Citrus Sinensis ID: 022278

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MQSPQVLLVLSVTLSLVTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL
Secondary Structure (PSIPRED)
ccccEEHHHHHHHHHEEEEccccccccccccccccccccccccEEEccccccccccccccccccEEEcccEEEEccccccccccccccccEEEEEEcccccccEEEEEEEEcccccccccccccEEEEEEEEcEEEEEEccccEEEEccccEEEEcccccEEEEEccccEEEEEEEEEEccccccccEEEccccccccccccccEEEEEEEccccccccEEEEEEEEEccccccccccccccEEEEEEEcEEEEEEccEEEEcccccEEEEccccHHHHEcccccEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHEEEEEEEEHHHHHEEcccccccccccHccccccccccccccccccccccccccccccccEEEEccEEEEcccccEEcccccccccEEEEEEcccccccHHHEEEEEcccccccccccccEEEEEEEEcEEEEEEEcccEEEEccccEEEEcccccEEEEcccccEEEEEEEEEEcccccccccEEEcccccccccccccEEEEEEcccccccccEEEEEEEEcccccccHHHHHHHHccEEEEEccEEEEcccccEEcccccEEEEcccccHHHHccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
MQSPQVLLVLSVTLSLVTigatdggfcsapsildretsskpmywkvtnptlspshlqdlpgftrsvykrdhalitpeshvlsplpewtntlgaylitpamgSHFVMYLANMQEnarsalpphdvERFIFVVQGSamltnasgvssklmvdsytylppnfahslraegsATLVVFERRYASLENHiteqivgstdkqplletpgeVFQLRkllpqavpfdfnihimdfqpgdflnvkEVHYNQHGLlllegqgiyrlgdswypvqagdvlwmapfvPQWYAALGKTRTRYLLYKDVNRNPL
Flexible Loop (DISEMBL)
MQSPQVLLVLSVTLSLVTIgatdggfcsapSILDRETSSKPMYWKVTNptlspshlqdlPGFTRSVYKRDHALITpeshvlsplpEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHiteqivgstdkqplLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRyllykdvnrnpl
Low Complexity Region (SEG)
MQSPQvllvlsvtlslvtIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL
Disordered region (IsUnstruct)
*****VLLVLSVTLSLVTIGATDGGFCSAPSILDR*****PMYWKVTNPTL***HLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV*****
Disordered Region (DISOPRED)
***PQVLLVLSVTLSLVTIGATD************************************PGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLAN*************VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNP*
Disordered Region (DISEMBL)
MQSPQVLLVLSVTLSLVTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL
Disordered Region (DISPRO)
**SPQVLLVLSVTLSLVTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSPQVLLVLSVTLSLVTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
P75713	261	Uncharacterized protein Y	N/A	no	0.78	0.896	0.295	3e-23

>sp|P75713|YLBA_ECOLI Uncharacterized protein YlbA OS=Escherichia coli (strain K12) GN=ylbA PE=1 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 10/244 (4%)

Query: 63  TRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPP 121
            R++ K  + AL+TP+  V + +P + N     L TP +G+ FV YL  + +N  +    
Sbjct: 17  NRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGF 76

Query: 122 HD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL---RAEGSATLVVFER 176
               +E F++V+ G+ +   A G +  L    Y Y PP    +    +AE S  + +++R
Sbjct: 77  GGEGIETFLYVISGN-ITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDS-QIFLYKR 134

Query: 177 RYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV 235
           RY  +E +    + G+  +   +   G +   L   LP+ + FD N+HI+ F PG     
Sbjct: 135 RYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGY 194

Query: 236 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RYLLYKD 294
            E H  +HG  +L GQG+Y L ++W PV+ GD ++M  +  Q    +G+     Y+  KD
Sbjct: 195 IETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKD 254

Query: 295 VNRN 298
            NR+
Sbjct: 255 CNRD 258

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
449463234	309	PREDICTED: uncharacterized protein LOC10	0.98	0.951	0.778	1e-137
51971771	298	unknown protein [Arabidopsis thaliana]	0.976	0.983	0.778	1e-135
22328740	298	ureidoglycine aminohydrolase [Arabidopsi	0.976	0.983	0.778	1e-135
297804480	298	transcription factor [Arabidopsis lyrata	0.976	0.983	0.764	1e-134
51969886	298	unknown protein [Arabidopsis thaliana]	0.976	0.983	0.774	1e-134
312281791	298	unnamed protein product [Thellungiella h	0.976	0.983	0.774	1e-133
384482500	266	Chain A, Crystal Structure Of (S)-Ureido	0.876	0.988	0.817	1e-126
356510942	294	PREDICTED: uncharacterized protein LOC10	0.906	0.925	0.757	1e-124
356563399	293	PREDICTED: uncharacterized protein LOC10	0.916	0.938	0.745	1e-123
255637347	294	unknown [Glycine max]	0.906	0.925	0.746	1e-122

>gi|449463234|ref|XP_004149339.1| PREDICTED: uncharacterized protein LOC101218090 [Cucumis sativus] gi|449521758|ref|XP_004167896.1| PREDICTED: uncharacterized protein LOC101230608 [Cucumis sativus]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/294 (77%), Positives = 261/294 (88%)

Query: 7   LLVLSVTLSLVTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSV 66
           LL+L  T SL+       GFCSAPS++D +  SK +Y+KVTNPTLSPSHLQDLPGFTRSV
Sbjct: 13  LLILFATSSLLGFAFGGEGFCSAPSVVDSDADSKALYYKVTNPTLSPSHLQDLPGFTRSV 72

Query: 67  YKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVER 126
           YKRDHALITPES V SPLPEWTNTLGAYLITPA+GSHFVMYLA M+E ++S LPP DVER
Sbjct: 73  YKRDHALITPESQVFSPLPEWTNTLGAYLITPALGSHFVMYLAQMKEKSKSGLPPTDVER 132

Query: 127 FIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHIT 186
           F+FV+QG+  LTN+SG+S KL VDS+ YLPPNF HS+ ++ SATLVVFERRYASL +H T
Sbjct: 133 FLFVIQGAVKLTNSSGISEKLTVDSFAYLPPNFDHSVMSDSSATLVVFERRYASLVDHHT 192

Query: 187 EQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLL 246
           +QIVGSTDKQPLLETPGEVFQLRKLLP ++P+DFN+HIMDF+PG+FLNVKEVHYNQHGLL
Sbjct: 193 KQIVGSTDKQPLLETPGEVFQLRKLLPMSMPYDFNVHIMDFEPGEFLNVKEVHYNQHGLL 252

Query: 247 LLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL 300
           LLEGQGIYRLGD WYPVQ+GD +WMAPFVPQWYAALGKTR+RYLLYKD+NRNPL
Sbjct: 253 LLEGQGIYRLGDYWYPVQSGDAIWMAPFVPQWYAALGKTRSRYLLYKDMNRNPL 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971771|dbj|BAD44550.1| unknown protein [Arabidopsis thaliana]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/293 (77%), Positives = 253/293 (86%)

Query: 8   LVLSVTLSLVTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVY 67
           L++ + +SLV    +D GFCSAPSI++ +  + P+YWK TNPTLSPSHLQDLPGFTRSVY
Sbjct: 6   LIVFIVISLVKASKSDDGFCSAPSIVESDEKTNPIYWKATNPTLSPSHLQDLPGFTRSVY 65

Query: 68  KRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERF 127
           KRDHALITPESHV SPLP+WTNTLGAYLITPA GSHFVMYLA M+E + S LPP D+ER 
Sbjct: 66  KRDHALITPESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGLPPQDIERL 125

Query: 128 IFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITE 187
           IFVV+G+  LTN+S  S KL VDSY YLPPNF HSL    SATLVVFERRY  L +H TE
Sbjct: 126 IFVVEGAVTLTNSSSSSKKLTVDSYAYLPPNFHHSLDCVESATLVVFERRYEYLGSHTTE 185

Query: 188 QIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLL 247
            IVGSTDKQPLLETPGEVF+LRKLLP +V +DFNIH MDFQPG+FLNVKEVHYNQHGLLL
Sbjct: 186 LIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFNIHTMDFQPGEFLNVKEVHYNQHGLLL 245

Query: 248 LEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL 300
           LEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAALGKTR+RYLLYKDVNRNPL
Sbjct: 246 LEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328740|ref|NP_193438.2| ureidoglycine aminohydrolase [Arabidopsis thaliana] gi|26451095|dbj|BAC42652.1| unknown protein [Arabidopsis thaliana] gi|296248910|gb|ADH04164.1| ureidoglycine aminohydrolase [Arabidopsis thaliana] gi|332658443|gb|AEE83843.1| ureidoglycine aminohydrolase [Arabidopsis thaliana]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/293 (77%), Positives = 252/293 (86%)

Query: 8   LVLSVTLSLVTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVY 67
           L++ + +SLV    +D GFCSAPSI++ +  + P+YWK TNPTLSPSHLQDLPGFTRSVY
Sbjct: 6   LIVFIVISLVKASKSDDGFCSAPSIVESDEKTNPIYWKATNPTLSPSHLQDLPGFTRSVY 65

Query: 68  KRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERF 127
           KRDHALITPESHV SPLP+WTNTLGAYLITPA GSHFVMYLA M+E + S LPP D+ER 
Sbjct: 66  KRDHALITPESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGLPPQDIERL 125

Query: 128 IFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITE 187
           IFVV+G+  LTN S  S KL VDSY YLPPNF HSL    SATLVVFERRY  L +H TE
Sbjct: 126 IFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNFHHSLDCVESATLVVFERRYEYLGSHTTE 185

Query: 188 QIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLL 247
            IVGSTDKQPLLETPGEVF+LRKLLP +V +DFNIH MDFQPG+FLNVKEVHYNQHGLLL
Sbjct: 186 LIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFNIHTMDFQPGEFLNVKEVHYNQHGLLL 245

Query: 248 LEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL 300
           LEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAALGKTR+RYLLYKDVNRNPL
Sbjct: 246 LEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804480|ref|XP_002870124.1| transcription factor [Arabidopsis lyrata subsp. lyrata] gi|297315960|gb|EFH46383.1| transcription factor [Arabidopsis lyrata subsp. lyrata]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/293 (76%), Positives = 251/293 (85%)

Query: 8   LVLSVTLSLVTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVY 67
           L+  + +SLV    +D GFCSAPSI + +  +KP+YWK TNPTLSPSHLQDLPGFTRSVY
Sbjct: 6   LIFFIVISLVKASKSDDGFCSAPSIAESDEKTKPIYWKATNPTLSPSHLQDLPGFTRSVY 65

Query: 68  KRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERF 127
           KRDHALITPESHV SPLP+W NTLGAYLITPA GSHFVMYLA M+E + S LPP D+ER 
Sbjct: 66  KRDHALITPESHVYSPLPDWKNTLGAYLITPATGSHFVMYLAKMKEMSSSGLPPQDIERL 125

Query: 128 IFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITE 187
           +FVV+G+  LTN S  S +L VDSY YLPPNF HS+    SATLVVFERRY  L +H TE
Sbjct: 126 VFVVEGAVTLTNTSSSSKQLTVDSYVYLPPNFHHSMDCVESATLVVFERRYEHLGSHTTE 185

Query: 188 QIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLL 247
            I+GSTDKQPLLETPGEVF+LRKLLP ++ +DFNIHIMDFQPG+FLNVKEVHYNQHGLLL
Sbjct: 186 LIIGSTDKQPLLETPGEVFELRKLLPMSLAYDFNIHIMDFQPGEFLNVKEVHYNQHGLLL 245

Query: 248 LEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL 300
           LEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAALGKTR+RYLLYKDVNRNPL
Sbjct: 246 LEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL 298

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51969886|dbj|BAD43635.1| unknown protein [Arabidopsis thaliana]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/293 (77%), Positives = 251/293 (85%)

Query: 8   LVLSVTLSLVTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVY 67
           L++ + +SLV    +D GFCSAPSI++ +  + P+YWK TNPTLSPSHLQDLPGFTRSVY
Sbjct: 6   LIVFIVISLVKASKSDDGFCSAPSIVESDEKTNPIYWKATNPTLSPSHLQDLPGFTRSVY 65

Query: 68  KRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERF 127
           KRDHALITPESHV SPLP+WTNTLGAYLITPA GSHFVMYLA M+E + S LPP D+ER 
Sbjct: 66  KRDHALITPESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGLPPQDIERL 125

Query: 128 IFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITE 187
           IFVV+G+  LTN S  S KL VDSY YLPPNF HSL    SATLVVFERRY  L +H TE
Sbjct: 126 IFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNFHHSLDCVESATLVVFERRYEYLGSHTTE 185

Query: 188 QIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLL 247
            IVGSTDKQPLLETPGEVF+LRKLLP +V +DFNIH M FQPG+FLNVKEVHYNQHGLLL
Sbjct: 186 LIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFNIHTMGFQPGEFLNVKEVHYNQHGLLL 245

Query: 248 LEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL 300
           LEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAALGKTR+RYLLYKDVNRNPL
Sbjct: 246 LEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281791|dbj|BAJ33761.1| unnamed protein product [Thellungiella halophila]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/293 (77%), Positives = 251/293 (85%)

Query: 8   LVLSVTLSLVTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVY 67
           L + + +SLV    +D GFCSAPSI + +  SK +Y KVTNPTLSPSHLQDLPGFTRSVY
Sbjct: 6   LFIFIIISLVKASESDDGFCSAPSIAESDEVSKLIYGKVTNPTLSPSHLQDLPGFTRSVY 65

Query: 68  KRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERF 127
           KRDHALITPESHV SPLP+WTNTLGAYLITPAMGSHFVMY A M+E + S LPP D+ER 
Sbjct: 66  KRDHALITPESHVYSPLPDWTNTLGAYLITPAMGSHFVMYFAKMKEMSSSGLPPQDIERL 125

Query: 128 IFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITE 187
           +FV++G+  LTN S  S KL VDSY YLPPNF HSL    SATLVVFERRYA L +  TE
Sbjct: 126 VFVIEGAVTLTNTSSSSKKLTVDSYAYLPPNFYHSLDCVESATLVVFERRYAHLGSLTTE 185

Query: 188 QIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLL 247
            IVGSTDKQPLLETPGEVF+LRKLLP ++ +DFNIHIMDFQPG+FLNVKEVHYNQHGLLL
Sbjct: 186 LIVGSTDKQPLLETPGEVFELRKLLPVSLAYDFNIHIMDFQPGEFLNVKEVHYNQHGLLL 245

Query: 248 LEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL 300
           LEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAALGKTR+RYLLYKDVNRNPL
Sbjct: 246 LEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL 298

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|384482500|pdb|4E2Q|A Chain A, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482501|pdb|4E2Q|B Chain B, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482502|pdb|4E2Q|C Chain C, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482503|pdb|4E2Q|D Chain D, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482504|pdb|4E2Q|E Chain E, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482505|pdb|4E2Q|F Chain F, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482506|pdb|4E2Q|G Chain G, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482507|pdb|4E2Q|H Chain H, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482508|pdb|4E2Q|I Chain I, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482509|pdb|4E2Q|J Chain J, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482510|pdb|4E2Q|K Chain K, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482511|pdb|4E2Q|L Chain L, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482512|pdb|4E2Q|M Chain M, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482513|pdb|4E2Q|N Chain N, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482514|pdb|4E2Q|O Chain O, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482515|pdb|4E2Q|P Chain P, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482516|pdb|4E2S|A Chain A, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482517|pdb|4E2S|B Chain B, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482518|pdb|4E2S|C Chain C, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482519|pdb|4E2S|D Chain D, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482520|pdb|4E2S|E Chain E, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482521|pdb|4E2S|F Chain F, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482522|pdb|4E2S|G Chain G, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482523|pdb|4E2S|H Chain H, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482524|pdb|4E2S|I Chain I, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482525|pdb|4E2S|J Chain J, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482526|pdb|4E2S|K Chain K, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482527|pdb|4E2S|L Chain L, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482528|pdb|4E2S|M Chain M, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482529|pdb|4E2S|N Chain N, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482530|pdb|4E2S|O Chain O, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482531|pdb|4E2S|P Chain P, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/263 (81%), Positives = 231/263 (87%)

Query: 38  SSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLIT 97
            + P+YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLIT
Sbjct: 4   KTNPIYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLIT 63

Query: 98  PAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPP 157
           PA GSHFVMYLA M+E + S LPP D+ER IFVV+G+  LTN S  S KL VDSY YLPP
Sbjct: 64  PATGSHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPP 123

Query: 158 NFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVP 217
           NF HSL    SATLVVFERRY  L +H TE IVGSTDKQPLLETPGEVF+LRKLLP +V 
Sbjct: 124 NFHHSLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVA 183

Query: 218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ 277
           +DFNIH MDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQ
Sbjct: 184 YDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQ 243

Query: 278 WYAALGKTRTRYLLYKDVNRNPL 300
           WYAALGKTR+RYLLYKDVNRNPL
Sbjct: 244 WYAALGKTRSRYLLYKDVNRNPL 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510942|ref|XP_003524192.1| PREDICTED: uncharacterized protein LOC100800098 [Glycine max]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/276 (75%), Positives = 238/276 (86%), Gaps = 4/276 (1%)

Query: 25  GFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPL 84
           GFCSAPS    E+ SKP+YWKV NPTLSP HLQDLPGFTRSVYK +HALI+PESHV  PL
Sbjct: 23  GFCSAPS----ESKSKPLYWKVDNPTLSPIHLQDLPGFTRSVYKSNHALISPESHVYGPL 78

Query: 85  PEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS 144
           P+W NTLG YLI+P MGSHFVMYLA ++EN++S LP   VERFIFV+QG+  LTNA+GVS
Sbjct: 79  PDWINTLGTYLISPEMGSHFVMYLAKLKENSKSGLPLPGVERFIFVLQGAVTLTNATGVS 138

Query: 145 SKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGE 204
             L VDSY Y PPNF HS+  +  AT+V+ ERRY+ L NHI E +VGSTDKQPLLETPGE
Sbjct: 139 QLLKVDSYAYFPPNFEHSIECDAPATIVLIERRYSPLPNHIPEPLVGSTDKQPLLETPGE 198

Query: 205 VFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQ 264
           +F+LRKL+P ++ +DFNIHIMDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQ
Sbjct: 199 IFELRKLIPTSLAYDFNIHIMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQ 258

Query: 265 AGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL 300
           AGDV+WMAPFVPQWYAALGKTRTRYL+YKD NR+PL
Sbjct: 259 AGDVIWMAPFVPQWYAALGKTRTRYLIYKDANRSPL 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563399|ref|XP_003549951.1| PREDICTED: uncharacterized protein LOC100781644 [Glycine max]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/279 (74%), Positives = 239/279 (85%), Gaps = 4/279 (1%)

Query: 22  TDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVL 81
            + GFCSAPS    E+ SKP+YWKV NPTLSP HLQDLPGFTRSVYK +HAL++PESHV 
Sbjct: 19  AEEGFCSAPS----ESKSKPLYWKVDNPTLSPIHLQDLPGFTRSVYKSNHALVSPESHVY 74

Query: 82  SPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS 141
            PLP+W +T GAYLI+P MGSHFVMYLA ++E ++S LP   VERFIFV+QG+  LTNA+
Sbjct: 75  GPLPDWIDTSGAYLISPEMGSHFVMYLAKLKEKSKSGLPLPGVERFIFVLQGAVTLTNAA 134

Query: 142 GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLET 201
           GVS  L VDSY Y PPNF HS+  +  AT+VVFERRY+ L NHI E +VGSTDKQPLLET
Sbjct: 135 GVSQLLKVDSYAYFPPNFEHSIECDTPATIVVFERRYSPLPNHIPEPLVGSTDKQPLLET 194

Query: 202 PGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWY 261
           PGE+F+LRKL+P ++ +DFNIHIMDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGDSWY
Sbjct: 195 PGEIFELRKLIPTSLAYDFNIHIMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDSWY 254

Query: 262 PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL 300
           PVQAGDV+WMAPFVPQWYAALGKTRTRYL+YKD NR+PL
Sbjct: 255 PVQAGDVIWMAPFVPQWYAALGKTRTRYLIYKDANRSPL 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637347|gb|ACU19003.1| unknown [Glycine max]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/276 (74%), Positives = 235/276 (85%), Gaps = 4/276 (1%)

Query: 25  GFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPL 84
           GFCSAPS    E+ SKP+YWKV NPTLSP HLQDLPGFTRSVYK +HALI+PESHV  PL
Sbjct: 23  GFCSAPS----ESKSKPLYWKVDNPTLSPIHLQDLPGFTRSVYKSNHALISPESHVYGPL 78

Query: 85  PEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS 144
           P+W NTLG YLI+P MGSHFVMYLA ++EN++S LP   VERFIFV+QG+  LTNA+GVS
Sbjct: 79  PDWINTLGTYLISPEMGSHFVMYLAKLKENSKSGLPLPGVERFIFVLQGAVTLTNATGVS 138

Query: 145 SKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGE 204
             L VDSY Y PPNF HS+  +  AT+V+ ERRY+ L NHI E +VGSTDKQ LLETPGE
Sbjct: 139 QLLKVDSYAYFPPNFEHSIECDAPATIVLIERRYSPLPNHIPEPLVGSTDKQSLLETPGE 198

Query: 205 VFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQ 264
           +F+LRKL+P ++ +DFNIHIMDFQPG+F NVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQ
Sbjct: 199 IFELRKLIPTSLAYDFNIHIMDFQPGEFFNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQ 258

Query: 265 AGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL 300
           AGDV+WMAPFVPQWYAALGKTRTRY +YKD NR+PL
Sbjct: 259 AGDVIWMAPFVPQWYAALGKTRTRYFIYKDANRSPL 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2130459	298	UGLYAH "AT4G17050" [Arabidopsi	0.93	0.936	0.802	1e-123
UNIPROTKB|P75713	261	allE "S-ureidoglycine aminohyd	0.77	0.885	0.302	1.2e-26
UNIPROTKB|Q5LV26	275	SPO0876 "Uncharacterized prote	0.78	0.850	0.326	7.6e-25
TIGR_CMR|SPO_0876	275	SPO_0876 "conserved hypothetic	0.78	0.850	0.326	7.6e-25
UNIPROTKB|Q4KA30	278	PFL_3803 "Uncharacterized prot	0.723	0.780	0.320	6.8e-24

TAIR|locus:2130459 UGLYAH "AT4G17050" [Arabidopsis thaliana (taxid:3702)]

 Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
 Identities = 224/279 (80%), Positives = 244/279 (87%)

Query:    22 TDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVL 81
             +D GFCSAPSI++ +  + P+YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV 
Sbjct:    20 SDDGFCSAPSIVESDEKTNPIYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVY 79

Query:    82 SPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS 141
             SPLP+WTNTLGAYLITPA GSHFVMYLA M+E + S LPP D+ER IFVV+G+  LTN S
Sbjct:    80 SPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS 139

Query:   142 GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLET 201
               S KL VDSY YLPPNF HSL    SATLVVFERRY  L +H TE IVGSTDKQPLLET
Sbjct:   140 SSSKKLTVDSYAYLPPNFHHSLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLET 199

Query:   202 PGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWY 261
             PGEVF+LRKLLP +V +DFNIH MDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WY
Sbjct:   200 PGEVFELRKLLPMSVAYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWY 259

Query:   262 PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL 300
             PVQAGDV+WMAPFVPQWYAALGKTR+RYLLYKDVNRNPL
Sbjct:   260 PVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL 298

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000256 "allantoin catabolic process" evidence=IDA

GO:0071522 "ureidoglycine aminohydrolase activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|P75713 allE "S-ureidoglycine aminohydrolase" [Escherichia coli K-12 (taxid:83333)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 74/245 (30%), Positives = 125/245 (51%)

Query:    64 RSVYKRDH-ALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENA--RSALP 120
             R++ K  + AL+TP+  V + +P + N     L TP +G+ FV YL  + +N   +    
Sbjct:    18 RAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFG 77

Query:   121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN----FAHSLRAEGSATLVVFER 176
                +E F++V+ G+ +   A G +  L    Y Y PP     F ++ +AE S  + +++R
Sbjct:    78 GEGIETFLYVISGN-ITAKAEGKTFALSEGGYLYCPPGSLMTFVNA-QAEDSQ-IFLYKR 134

Query:   177 RYASLENHITEQIVGSTDKQPLLETPG--EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLN 234
             RY  +E +    + G+  +   +   G  +V  L   LP+ + FD N+HI+ F PG    
Sbjct:   135 RYVPVEGYAPWLVSGNASELERIHYEGMDDVILL-DFLPKELGFDMNMHILSFAPGASHG 193

Query:   235 VKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RYLLYK 293
               E H  +HG  +L GQG+Y L ++W PV+ GD ++M  +  Q    +G+     Y+  K
Sbjct:   194 YIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSK 253

Query:   294 DVNRN 298
             D NR+
Sbjct:   254 DCNRD 258

GO:0071522 "ureidoglycine aminohydrolase activity" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

UNIPROTKB|Q5LV26 SPO0876 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 81/248 (32%), Positives = 118/248 (47%)

Query:    64 RSVYKRDHALI---TPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSA 118
             R+++ + +A+I   T    V S LP W  T    L  P  G    F  Y+  +Q    S 
Sbjct:    23 RAMFTQAYAVIPKGTMRDIVTSKLPFWQGTRAWILARPLSGFAETFSHYIMEVQPGGGSD 82

Query:   119 LPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE-GSATLVVFE 175
              P  D   +  +FVV+G+  LT   G    L    Y Y+P      LR   G A    + 
Sbjct:    83 RPDTDPGAQAVLFVVEGAVTLT-LDGAEHVLEPGGYAYIPAGHPWRLRNHAGPAARFHWI 141

Query:   176 RR-YASLE--NHITEQIVGSTDKQP--LLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPG 230
             R+ Y ++E  +  T  ++   D  P  +  T G     R + P+ +  D ++ I++F PG
Sbjct:   142 RKAYEAVEGIDPPTPFVIREQDVTPNEMPGTEGRWSTTRFVDPEDMRHDMHVTIVNFLPG 201

Query:   231 DFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 290
               +   E H  +HGL +LEG+ +YRL   W  V+AGD +W+  F PQ   A G    RYL
Sbjct:   202 GVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDYMWLRAFCPQACYAGGPGPFRYL 261

Query:   291 LYKDVNRN 298
             LYKDVNR+
Sbjct:   262 LYKDVNRH 269

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0876 SPO_0876 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 81/248 (32%), Positives = 118/248 (47%)

Query:    64 RSVYKRDHALI---TPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSA 118
             R+++ + +A+I   T    V S LP W  T    L  P  G    F  Y+  +Q    S 
Sbjct:    23 RAMFTQAYAVIPKGTMRDIVTSKLPFWQGTRAWILARPLSGFAETFSHYIMEVQPGGGSD 82

Query:   119 LPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE-GSATLVVFE 175
              P  D   +  +FVV+G+  LT   G    L    Y Y+P      LR   G A    + 
Sbjct:    83 RPDTDPGAQAVLFVVEGAVTLT-LDGAEHVLEPGGYAYIPAGHPWRLRNHAGPAARFHWI 141

Query:   176 RR-YASLE--NHITEQIVGSTDKQP--LLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPG 230
             R+ Y ++E  +  T  ++   D  P  +  T G     R + P+ +  D ++ I++F PG
Sbjct:   142 RKAYEAVEGIDPPTPFVIREQDVTPNEMPGTEGRWSTTRFVDPEDMRHDMHVTIVNFLPG 201

Query:   231 DFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 290
               +   E H  +HGL +LEG+ +YRL   W  V+AGD +W+  F PQ   A G    RYL
Sbjct:   202 GVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDYMWLRAFCPQACYAGGPGPFRYL 261

Query:   291 LYKDVNRN 298
             LYKDVNR+
Sbjct:   262 LYKDVNRH 269

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q4KA30 PFL_3803 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 73/228 (32%), Positives = 106/228 (46%)

Query:    80 VLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALPPHD--VERFIFVVQGSA 135
             V S LP W N     +  P  G    F  Y+  +  N  S  P  D   E  +FVV+G  
Sbjct:    42 VTSHLPHWDNMRMWVIARPLSGFAETFSQYIVEVGANGGSDKPEQDPNAEAVLFVVEGEV 101

Query:   136 MLTNASGVSSKLMVDSYTYLPPNFAHSLR-AEGS-ATLVVFERRYASLEN--HITEQIVG 191
              LT   G    L    Y ++PP     LR   G+ A      + Y  ++   +    +  
Sbjct:   102 NLT-LQGQVHVLKPGGYAFIPPAADWKLRNTSGTEARFHWIRKHYQKVDGVPYPDAFVTN 160

Query:   192 STDKQPLL--ETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLE 249
               D +P +  +T G     R +    +  D +++I++F+PG  +   E H  +HGL +LE
Sbjct:   161 EQDIEPRVMPDTEGRWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLE 220

Query:   250 GQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR 297
             G+ +YRL   W  V+AGD +W+  F PQ   + G  R RYLLYKDVNR
Sbjct:   221 GKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNR 268


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      300       287   0.00087  115 3  11 22  0.37    34
                                                     33  0.43    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  220 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.18u 0.11s 23.29t   Elapsed:  00:00:01
  Total cpu time:  23.18u 0.11s 23.29t   Elapsed:  00:00:01
  Start:  Sat May 11 13:52:31 2013   End:  Sat May 11 13:52:32 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
PRK11171	266	PRK11171, PRK11171, hypothetical protein; Provisio	4e-83
TIGR03214	252	TIGR03214, ura-cupin, putative allantoin catabolis	2e-60
COG3257	264	COG3257, GlxB, Uncharacterized protein, possibly i	7e-56
pfam07883	70	pfam07883, Cupin_2, Cupin domain	1e-04
COG1917	131	COG1917, COG1917, Uncharacterized conserved protei	3e-04
COG3837	161	COG3837, COG3837, Uncharacterized conserved protei	0.004

>gnl|CDD|183011 PRK11171, PRK11171, hypothetical protein; Provisional

 Score =  250 bits (642), Expect = 4e-83
 Identities = 93/252 (36%), Positives = 129/252 (51%), Gaps = 9/252 (3%)

Query: 57  QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENAR 116
           Q     TR+V    +A+I P+  V S LP W NT    L  P +G+ F  YL  ++    
Sbjct: 14  QTDLLTTRAVVTEAYAVIPPDDIVTSVLPGWENTRAWVLARPGLGATFSQYLVEVEPGGG 73

Query: 117 S--ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS--ATLV 172
           S    P    E F+FVV+G   LT   G +  L    Y YLPP    +LR  G+  A   
Sbjct: 74  SDQPEPDEGAETFLFVVEGEITLT-LEGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFH 132

Query: 173 VFERRYASLENHIT-EQIVGS---TDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQ 228
              +RY  +E H   E  VG+    +  P+  T G     R + P+ + FD +++I+ F+
Sbjct: 133 WIRKRYEPVEGHEAPEAFVGNESDIEPIPMPGTDGVWATTRLVDPEDLRFDMHVNIVTFE 192

Query: 229 PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR 288
           PG  +   E H  +HGL +LEG+G+YRL + W  V+AGD +WM  + PQ   A G    R
Sbjct: 193 PGASIPFVETHVMEHGLYVLEGKGVYRLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFR 252

Query: 289 YLLYKDVNRNPL 300
           YLLYKDVNR+P 
Sbjct: 253 YLLYKDVNRHPE 264

Length = 266

>gnl|CDD|200251 TIGR03214, ura-cupin, putative allantoin catabolism protein

 Score =  192 bits (490), Expect = 2e-60
 Identities = 84/247 (34%), Positives = 130/247 (52%), Gaps = 11/247 (4%)

Query: 63  TRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALP 120
           TR+++  ++A+ITP+  V + +P + NT    L  P +G  + FV Y+  +     +   
Sbjct: 7   TRAIFTGNYAVITPDGLVSNIVPGFENTDIWILARPKLGFSATFVQYIVEVHPGGGATTG 66

Query: 121 PHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF--ER 176
                +E F+FV+ G   ++   G + +L    Y YLPP    +L          F  ++
Sbjct: 67  FGGEGIETFLFVIDGEVNVS-LGGETHELEEGGYAYLPPGSKWTLENAQDEDARFFLYKK 125

Query: 177 RYASLEN-HITEQIVGSTDKQPLLETPG--EVFQLRKLLPQAVPFDFNIHIMDFQPGDFL 233
           RY  +E  H  E +VG+          G  +V+    LLP+ + FD N+HI+ F+PG   
Sbjct: 126 RYQPVEGLHAPEAVVGNERDIEPEAYEGMDDVW-ATTLLPKELAFDMNVHILSFEPGASH 184

Query: 234 NVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK 293
              E H  +HGL +LEG+G+Y L + W PV+AGD +WM  + PQ   A+G+   RYLLYK
Sbjct: 185 PYIETHVMEHGLYVLEGKGVYNLDNDWVPVEAGDYIWMGAYCPQACYAVGRGPFRYLLYK 244

Query: 294 DVNRNPL 300
           DVNR+P 
Sbjct: 245 DVNRHPK 251

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis). Length = 252

>gnl|CDD|225796 COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

 Score =  181 bits (460), Expect = 7e-56
 Identities = 87/253 (34%), Positives = 124/253 (49%), Gaps = 10/253 (3%)

Query: 56  LQDLPGFTRSVYKRDHALITPESH-VLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQ 112
            Q      R+++K  +A+I      V S LP W NT    L  P  G  + FV Y+  + 
Sbjct: 10  YQTDLLANRAIFKEAYAVIPKGVMIVTSILPFWENTRAWILSRPLSGFAATFVQYIVELH 69

Query: 113 ENARSALPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSAT 170
            N  S  P  D   E F+FVV G   +  A G +  L    Y YLPP    +LR      
Sbjct: 70  PNGGSQRPEGDEGAETFLFVVSGEITVK-AEGKTHALREGGYAYLPPGSGWTLRNAQKED 128

Query: 171 --LVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMD 226
                  +RY  +E     E + G+  +       G +      +LP+ + FD ++HI+ 
Sbjct: 129 SRFHWIRKRYQPVEGVQAPELVSGNESEIEPSPMEGTDGVIATTVLPKELRFDMHVHIVS 188

Query: 227 FQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR 286
           F+PG  +   E H  +HGL +LEG+G+YRL ++W PV+AGD +WM  + PQ   A G+  
Sbjct: 189 FEPGASIPYAETHVMEHGLYVLEGKGVYRLNNNWVPVEAGDYIWMGAYCPQACYAGGRGA 248

Query: 287 TRYLLYKDVNRNP 299
            RYLLYKDVNR+ 
Sbjct: 249 FRYLLYKDVNRHV 261

Length = 264

>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 223 HIMDFQPGDFLNVKEVHY--NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYA 280
            ++   PG+       H    +    +LEG+G   +      ++AGD ++    VP  + 
Sbjct: 1   GLVTLPPGE---SSPPHRHPGEEFFYVLEGEGELTVDGEEVVLKAGDSVYFPAGVPHRFR 57

Query: 281 ALGKTRTRYL 290
             G    R L
Sbjct: 58  NTGDEPARLL 67

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). Length = 70

>gnl|CDD|224829 COG1917, COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 203 GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWY 261
           G      ++LP+    + ++ ++ F+PG  +     H   +  + +LEG+G  +L     
Sbjct: 26  GVAVVKSRVLPRNEGENLSVVLVTFEPGAVIP-WHTHPLGEQTIYVLEGEGTVQLEGEKK 84

Query: 262 PVQAGDVLWMAPFVPQWYAALGKTRTRYLL---YKDVNRNPL 300
            ++AGDV+ + P V     A+       LL     D  R  L
Sbjct: 85  ELKAGDVIIIPPGVVHGLKAVEDEPMVLLLVFPLVDGFRVDL 126

Length = 131

>gnl|CDD|226357 COG3837, COG3837, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 219 DFNIHIMDFQPGDFLNVKEVHYNQHG---LLLLEGQGIYRLGDSWYPVQAGDVL 269
            F +++   +PG   +++  H++      + +LEG+G  R       ++ GD  
Sbjct: 41  RFGVNLEIVEPGGESSLR--HWHSAEDEFVYILEGEGTLREDGGETRLRPGDSA 92

Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	100.0
COG3257	264	GlxB Uncharacterized protein, possibly involved in	100.0
PRK11171	266	hypothetical protein; Provisional	100.0
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.93
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	99.9
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.69
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.59
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.56
COG1917	131	Uncharacterized conserved protein, contains double	99.55
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.48
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.44
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	99.39
PRK11171	266	hypothetical protein; Provisional	99.38
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	99.35
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	99.32
COG1917	131	Uncharacterized conserved protein, contains double	99.31
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.29
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.28
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.27
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.27
COG3837	161	Uncharacterized conserved protein, contains double	99.22
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.22
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	99.21
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.2
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	99.2
PRK04190	191	glucose-6-phosphate isomerase; Provisional	99.18
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.1
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	99.07
COG3837	161	Uncharacterized conserved protein, contains double	99.05
PLN00212	493	glutelin; Provisional	99.0
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.99
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.94
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.92
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.84
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	98.81
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.81
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	98.73
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.72
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.69
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	98.68
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.67
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.65
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.65
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	98.63
PLN00212	493	glutelin; Provisional	98.62
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	98.62
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.62
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.6
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	98.58
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	98.56
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	98.48
PRK13501	290	transcriptional activator RhaR; Provisional	98.34
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	98.29
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	98.24
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	98.23
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.22
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	98.21
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	98.16
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	98.16
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	98.11
PRK13500	312	transcriptional activator RhaR; Provisional	98.05
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.05
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	98.01
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	98.0
COG3257	264	GlxB Uncharacterized protein, possibly involved in	97.99
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	97.96
PRK13503	278	transcriptional activator RhaS; Provisional	97.95
PRK13502	282	transcriptional activator RhaR; Provisional	97.94
COG3718	270	IolB Uncharacterized enzyme involved in inositol m	97.89
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	97.89
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	97.88
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	97.86
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	97.8
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	97.8
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.79
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	97.78
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	97.73
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	97.72
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	97.69
COG3450	116	Predicted enzyme of the cupin superfamily [General	97.66
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	97.62
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	97.59
PRK15131	389	mannose-6-phosphate isomerase; Provisional	97.59
PRK13501	290	transcriptional activator RhaR; Provisional	97.58
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	97.57
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	97.56
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.45
PRK13502	282	transcriptional activator RhaR; Provisional	97.4
PRK13500	312	transcriptional activator RhaR; Provisional	97.4
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	97.33
PLN02288	394	mannose-6-phosphate isomerase	97.31
COG1791	181	Uncharacterized conserved protein, contains double	97.26
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	97.22
PRK13503	278	transcriptional activator RhaS; Provisional	97.18
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	97.18
COG1741	276	Pirin-related protein [General function prediction	97.03
COG4297	163	Uncharacterized protein containing double-stranded	97.03
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	97.02
PF05962	184	HutD: HutD; InterPro: IPR010282 This entry contain	96.97
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	96.91
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	96.82
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	96.82
PHA01976	67	helix-turn-helix protein	96.62
TIGR03070	58	couple_hipB transcriptional regulator, y4mF family	96.6
PF12844	64	HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_	96.59
TIGR02684	89	dnstrm_HI1420 probable addiction module antidote p	96.57
PRK13890	120	conjugal transfer protein TrbA; Provisional	96.55
COG1791	181	Uncharacterized conserved protein, contains double	96.53
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	96.49
TIGR00270	154	conserved hypothetical protein TIGR00270.	96.36
PF01381	55	HTH_3: Helix-turn-helix; InterPro: IPR001387 This	96.32
PRK08359	176	transcription factor; Validated	96.31
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	96.26
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	96.25
PRK06424	144	transcription factor; Provisional	96.15
TIGR02612	150	mob_myst_A mobile mystery protein A. Members of th	96.13
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.06
COG3450	116	Predicted enzyme of the cupin superfamily [General	96.03
PF13560	64	HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_	95.99
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	95.94
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	95.9
PRK09726	88	antitoxin HipB; Provisional	95.81
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	95.55
PF12852	186	Cupin_6: Cupin	95.46
KOG2107	179	consensus Uncharacterized conserved protein, conta	95.41
PF12852	186	Cupin_6: Cupin	95.38
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	95.32
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	95.31
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	95.15
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	95.13
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	95.07
PRK09706	135	transcriptional repressor DicA; Reviewed	95.01
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	94.99
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	94.9
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	94.85
COG4297	163	Uncharacterized protein containing double-stranded	94.69
PRK10579	94	hypothetical protein; Provisional	94.29
COG3717	278	KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate	94.28
PLN02288	394	mannose-6-phosphate isomerase	94.27
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	94.16
smart00530	56	HTH_XRE Helix-turn-helix XRE-family like proteins.	93.99
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	93.96
TIGR02607	78	antidote_HigA addiction module antidote protein, H	93.96
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	93.06
PRK15131	389	mannose-6-phosphate isomerase; Provisional	92.98
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	92.72
COG1476	68	Predicted transcriptional regulators [Transcriptio	92.52
PF14525	172	AraC_binding_2: AraC-binding-like domain	92.36
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	92.3
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	92.3
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	92.3
PLN02658	435	homogentisate 1,2-dioxygenase	92.2
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	92.15
COG1741	276	Pirin-related protein [General function prediction	92.09
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	92.07
KOG2107	179	consensus Uncharacterized conserved protein, conta	91.31
PF14525	172	AraC_binding_2: AraC-binding-like domain	91.06
PRK10072	96	putative transcriptional regulator; Provisional	90.48
PRK11396	191	hypothetical protein; Provisional	90.38
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	89.47
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	88.98
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	88.98
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	88.91
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	88.74
PRK04140	317	hypothetical protein; Provisional	88.73
PF07847	200	DUF1637: Protein of unknown function (DUF1637); In	87.77
COG5553	191	Predicted metal-dependent enzyme of the double-str	87.69
cd00093	58	HTH_XRE Helix-turn-helix XRE-family like proteins.	87.56
PF13443	63	HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3	87.53
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	87.13
PRK10579	94	hypothetical protein; Provisional	87.01
PRK02866	147	cyanate hydratase; Validated	86.83
TIGR03830	127	CxxCG_CxxCG_HTH putative zinc finger/helix-turn-he	86.64
PF13744	80	HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_	86.61
COG3123	94	Uncharacterized protein conserved in bacteria [Fun	86.24
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	86.19
TIGR00673	150	cynS cyanate hydratase. Alternate names include cy	86.17
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	85.63
PF05962	184	HutD: HutD; InterPro: IPR010282 This entry contain	85.51
COG3620	187	Predicted transcriptional regulator with C-termina	85.08
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	84.74
TIGR01321	94	TrpR trp operon repressor, proteobacterial. This m	83.89
cd01392	52	HTH_LacI Helix-turn-helix (HTH) DNA binding domain	82.21
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	80.92
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	80.8
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	80.67
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	80.55
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	80.55

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=100.00  E-value=8.4e-68  Score=487.97  Aligned_cols=243  Identities=35%  Similarity=0.618  Sum_probs=230.2

Q ss_pred             hcccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEEecCCCC--CcEEEEEEEEcCCCcCCCC-CCCc-eEEEEEEE
Q 022278           57 QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALP-PHDV-ERFIFVVQ  132 (300)
Q Consensus        57 ~~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g--~~f~~~lv~l~PG~~~~~~-~h~g-EEf~yVLe  132 (300)
                      ++.|.+|||+++++|||++|++.+.+.+|+|++++.++|++|..|  ++|++++++++||+.+..+ .|.+ |||+||++
T Consensus         9 ~~~~~~~r~~~~~~~a~i~p~~~~~~~vp~~~~~~~~~l~~P~~g~~~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~   88 (260)
T TIGR03214         9 QKQLLTTRAVVHGNYAVITPDGLVSNIVPGFENTDIWILSRPKLGFAATFVQYIVEVHPGGGNTTGFGGEGIETFLFVIS   88 (260)
T ss_pred             hhhcccceEEEEcceEEECCcceecccCCCCcccEEEEEcCCCCCCCCcEEEEEEEECCCCcCCCCCCCCceEEEEEEEe
Confidence            567889999999999999999999999999999999999999999  8999999999999877544 4555 99999999


Q ss_pred             CEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCC-CCcceeeccCCCCCCcccCC-ceeEE
Q 022278          133 GSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLEN-HITEQIVGSTDKQPLLETPG-EVFQL  208 (300)
Q Consensus       133 G~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g-~~p~~~~~~~~d~~~~~~~g-~~~~~  208 (300)
                      |++++++ +|+++.|++||++|||++.+|+++|  +++|+++||.|+|+|++| .+|.++++|++|++..+++| +++.+
T Consensus        89 G~l~v~~-~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k~y~~~~g~~~~~~vvg~~~dv~~~~~~g~~~~~~  167 (260)
T TIGR03214        89 GEVNVTA-EGETHELREGGYAYLPPGSKWTLANAQAEDARFFLYKKRYQPVEGLHAPELVVGNEKDIEPEPYEGMDDVIL  167 (260)
T ss_pred             CEEEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEeeeEEcCCCCCCCeeecCHHHCCccccCCCCcEEE
Confidence            9999999 9999999999999999999999999  679999999999999999 88999999999999999987 77788


Q ss_pred             EEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEE
Q 022278          209 RKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR  288 (300)
Q Consensus       209 ~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  288 (300)
                      +.|+|++.+++|+|++++|+||+++|+||||+|||++|||+|+|+|++||+|++|++||+|||+|||+||++|+|+++++
T Consensus       168 ~~llp~~~~~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~  247 (260)
T TIGR03214       168 TTLLPKELAFDMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFR  247 (260)
T ss_pred             EEeCchhcCCCcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEE
Confidence            88778788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCC
Q 022278          289 YLLYKDVNRNPL  300 (300)
Q Consensus       289 fi~~kd~nr~~~  300 (300)
                      ||+||||||||.
T Consensus       248 ~l~ykd~nr~~~  259 (260)
T TIGR03214       248 YLLYKDMNRHVK  259 (260)
T ss_pred             EEEEccccCCCC
Confidence            999999999984

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=100.00  E-value=4.1e-63  Score=433.88  Aligned_cols=243  Identities=35%  Similarity=0.620  Sum_probs=231.8

Q ss_pred             hhcccCCcceeeeeeeeEeCCCCe-eeccCCCCCcceEEEEecCCCC--CcEEEEEEEEcCCCcCCCC--CCCceEEEEE
Q 022278           56 LQDLPGFTRSVYKRDHALITPESH-VLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALP--PHDVERFIFV  130 (300)
Q Consensus        56 I~~~lg~trs~f~~~~av~~~e~~-~~~~~p~~~~~~~~~L~sp~~g--~~f~~~lv~l~PG~~~~~~--~h~gEEf~yV  130 (300)
                      .++-|..+|+.|+..+++|++... |.+.+|.|++++.++++.|..|  +.|.+|++++.|+|.+..+  ....|.|+||
T Consensus        10 ~q~~Ll~~RA~f~~ayavIpk~~~iVts~Lp~w~~tr~wilsrP~~Gf~~tF~qyive~~p~GGs~~~e~d~~ae~~lfV   89 (264)
T COG3257          10 YQTDLLANRAIFKEAYAVIPKGVMIVTSILPFWENTRAWILSRPLSGFAATFVQYIVELHPNGGSQRPEGDEGAETFLFV   89 (264)
T ss_pred             hhhhhhhchhhhccccEEecCCcEEEEeecCCCCCceEEEEeccccchhhhhhhheEEECCCCCCCCCCCCCcceEEEEE
Confidence            367889999999999999999987 8899999999999999999998  7999999999999977655  4577999999


Q ss_pred             EECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCCC-CcceeeccCCCCCCcccCC-cee
Q 022278          131 VQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVF  206 (300)
Q Consensus       131 LeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g~-~p~~~~~~~~d~~~~~~~g-~~~  206 (300)
                      ++|++++.+ +|+++.|++|+++|+||+..|+++|  .+++|+.|++|+|++.+|. +|+.+++|.+|++..+++| +++
T Consensus        90 v~Ge~tv~~-~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk~Y~~VdG~~~P~~~~~Ne~ei~~~~m~gtdg~  168 (264)
T COG3257          90 VSGEITVKA-EGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRKRYQPVEGVQAPELVSGNESEIEPSPMEGTDGV  168 (264)
T ss_pred             EeeeEEEEE-cCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEEeecceeecCccCCcceecChhhCCCCCCCCCCCe
Confidence            999999999 9999999999999999999999999  6899999999999999996 9999999999999999998 776


Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCcc
Q 022278          207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR  286 (300)
Q Consensus       207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  286 (300)
                      ....++|+|.++||+|++++|+||++||+.|+|++||++|||||+|+|++|..|+||++||+|||.++||||+++.|...
T Consensus       169 ~attv~P~d~r~Dmhv~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn~dwv~V~aGD~mwm~A~cpQacyagG~g~  248 (264)
T COG3257         169 IATTVLPKELRFDMHVHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLNNNWVPVEAGDYIWMGAYCPQACYAGGRGA  248 (264)
T ss_pred             EEEeeCccccCcceEEEEEEecCCcccchhhhhhhhcceEEEecceEEeecCceEEeecccEEEeeccChhhhccCCCCc
Confidence            77778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCCCC
Q 022278          287 TRYLLYKDVNRNP  299 (300)
Q Consensus       287 ~~fi~~kd~nr~~  299 (300)
                      ++||+|||||||+
T Consensus       249 frYLlyKDvNRh~  261 (264)
T COG3257         249 FRYLLYKDVNRHV  261 (264)
T ss_pred             eEEEEEecccccc
Confidence            9999999999997

>PRK11171 hypothetical protein; Provisional

Probab=100.00  E-value=5.7e-59  Score=430.57  Aligned_cols=243  Identities=38%  Similarity=0.665  Sum_probs=227.8

Q ss_pred             hcccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCC-CC-CceEEEEEEECE
Q 022278           57 QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP-PH-DVERFIFVVQGS  134 (300)
Q Consensus        57 ~~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~-~h-~gEEf~yVLeG~  134 (300)
                      ++.|+.|||++.+++++++|++++.+.+|+|.++..++|++|..++.|++++++++||+....+ .| ++|||+|||+|+
T Consensus        14 ~~~~~~~r~~~~~~~a~~~p~~~v~~~lp~~~~~~~~~L~~~~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~   93 (266)
T PRK11171         14 QTDLLTTRAVVTEAYAVIPPDDIVTSVLPGWENTRAWVLARPGLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGE   93 (266)
T ss_pred             cccccccceEEecCeEEECCcCEEeecCCCCCCeEEEEEeCCCCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCE
Confidence            4789999999999999999999999999999999999999998889999999999999887555 33 679999999999


Q ss_pred             EEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCCC-CcceeeccCCCCCCcccCC-ceeEEEE
Q 022278          135 AMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVFQLRK  210 (300)
Q Consensus       135 v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g~-~p~~~~~~~~d~~~~~~~g-~~~~~~~  210 (300)
                      +++++ +|+++.|.+||++|||++.+|+++|  +++|+++|+.++|+|.++. +|.++++|++|++.++++| .+..+++
T Consensus        94 l~v~~-~g~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~~y~~~~~~~~p~~~~~~~~d~~~~~~~g~~g~~~~~  172 (266)
T PRK11171         94 ITLTL-EGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRKRYEPVEGHEAPEAFVGNESDIEPIPMPGTDGVWATT  172 (266)
T ss_pred             EEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEcCCeEcCCCCCCCeEecchhcccccccCCCCCeEEEE
Confidence            99999 9999999999999999999999999  7899999999999999995 8999999999999999987 4545555


Q ss_pred             -ee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEE
Q 022278          211 -LL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR  288 (300)
Q Consensus       211 -l~-p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  288 (300)
                       ++ |++.++++.|++++|+||++++++|+|.+||.+|||+|+|++++||+|++|++||+||++++++|+|+|+|+++++
T Consensus       173 ~~~~p~~~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~  252 (266)
T PRK11171        173 RLVDPEDLRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFR  252 (266)
T ss_pred             EeeCchhcCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCCEEEECCCCCcEE
Confidence             44 6777888999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCC
Q 022278          289 YLLYKDVNRNPL  300 (300)
Q Consensus       289 fi~~kd~nr~~~  300 (300)
                      ||+||||||||+
T Consensus       253 yl~~k~~nr~~~  264 (266)
T PRK11171        253 YLLYKDVNRHPE  264 (266)
T ss_pred             EEEEcccccCcc
Confidence            999999999985

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.93  E-value=9.2e-24  Score=203.62  Aligned_cols=188  Identities=16%  Similarity=0.236  Sum_probs=143.5

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc--CCcEEE--eccCcEEEeCCCCceEEee-CCeEEEEEEEee
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA--SGVSSK--LMVDSYTYLPPNFAHSLRA-EGSATLVVFERR  177 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~--gg~~~~--L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~  177 (300)
                      .|++..+++.||+..+.|.|...|++||++|++.+++.  +|+.+.  |++||++|||++..|.++| ++.++++++...
T Consensus        66 ~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~  145 (367)
T TIGR03404        66 AIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDD  145 (367)
T ss_pred             cccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCC
Confidence            69999999999999888888899999999999999983  267774  9999999999999999998 667888873222


Q ss_pred             ------c----------cccC-------------------------C----------------CCcceeeccCCCCCCcc
Q 022278          178 ------Y----------ASLE-------------------------N----------------HITEQIVGSTDKQPLLE  200 (300)
Q Consensus       178 ------y----------~~~~-------------------------g----------------~~p~~~~~~~~d~~~~~  200 (300)
                            .          .|.+                         |                ..|..+.-+..++++..
T Consensus       146 ~~f~~~~~~~~~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  225 (367)
T TIGR03404       146 GNFSEDGTFLVTDWLAHTPKDVLAKNFGVPESAFDNLPLKELYIFPGTVPGPLDQEAVTGPAGEVPGPFTYHLSEQKPKQ  225 (367)
T ss_pred             cccCCcceeeHHHHHHhCCHHHHHHHhCCCHHHHHhccccCceEEecCCCCccccccCcCCCCCCCccEEEEhhhCCcee
Confidence                  1          0000                         0                01111111222333333


Q ss_pred             cCCceeEEEEeeCCCC--CcceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEe-----CCEEEEccCCcEEEeC
Q 022278          201 TPGEVFQLRKLLPQAV--PFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRL-----GDSWYPVQAGDVLWMA  272 (300)
Q Consensus       201 ~~g~~~~~~~l~p~~~--~~~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~-----~g~~~~v~~GD~i~~~  272 (300)
                      ..||.  ++.+.+.+.  ...+.+..++++||+..+. |.|. .+|.+|||+|++++++     ++++.++++||++|+|
T Consensus       226 ~~gG~--~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~-H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP  302 (367)
T TIGR03404       226 VPGGT--VRIADSTNFPVSKTIAAAIVTVEPGAMREL-HWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVP  302 (367)
T ss_pred             cCCce--EEEEChhhccCcceEEEEEEEECCCCccCC-eeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEEC
Confidence            34443  355555432  3568999999999999997 5565 5688999999999998     3689999999999999


Q ss_pred             CCCceeEEecCCccEEEEEEe
Q 022278          273 PFVPQWYAALGKTRTRYLLYK  293 (300)
Q Consensus       273 ~~~~H~~~n~G~e~~~fi~~k  293 (300)
                      +|..|.++|+|+++++||+.=
T Consensus       303 ~g~~H~i~N~G~e~l~fL~if  323 (367)
T TIGR03404       303 RNMGHYVENTGDETLVFLEVF  323 (367)
T ss_pred             CCCeEEEEECCCCCEEEEEEE
Confidence            999999999999999999963

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=99.90  E-value=1.3e-23  Score=184.35  Aligned_cols=146  Identities=14%  Similarity=0.155  Sum_probs=120.8

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeeee-------eeEeCCCCeeeccCCCCCcceEEE
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKRD-------HALITPESHVLSPLPEWTNTLGAY   94 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~~-------~av~~~e~~~~~~~p~~~~~~~~~   94 (300)
                      -|+++||+++|+|+++|||+|||..+|+.     |+++||++...|+..       ..+++++++....   ..+.....
T Consensus        21 lt~~elA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~v~~~~e~~~~~---~~g~~~~~   97 (185)
T PRK09943         21 LSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMG---SQGVSMKL   97 (185)
T ss_pred             CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHccCccccCCcceEEchhHhhccc---cCCceEEE
Confidence            47899999999999999999999999998     999999999999862       2345555543321   12344455


Q ss_pred             EecCCCCCcEEEEEEEEcCCCcCCC-CCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEE
Q 022278           95 LITPAMGSHFVMYLANMQENARSAL-PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATL  171 (300)
Q Consensus        95 L~sp~~g~~f~~~lv~l~PG~~~~~-~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~v  171 (300)
                      +.....+..+++++.+++||+.... +.|.++||+||++|++++++ +|+++.|++||++|||++.+|+|+|  ++++++
T Consensus        98 l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~-~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~  176 (185)
T PRK09943         98 VHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI-NGQDYHLVAGQSYAINTGIPHSFSNTSAGICRI  176 (185)
T ss_pred             eccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEE-CCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEE
Confidence            5544555788999999999987643 47999999999999999999 9999999999999999999999999  678999


Q ss_pred             EEEEe
Q 022278          172 VVFER  176 (300)
Q Consensus       172 l~v~~  176 (300)
                      +|+..
T Consensus       177 l~~~~  181 (185)
T PRK09943        177 ISAHT  181 (185)
T ss_pred             EEEeC
Confidence            99854

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.69  E-value=2.6e-16  Score=130.39  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=85.8

Q ss_pred             eeeccCCCCCCcccC--C-ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEE-e-CCEEEE
Q 022278          188 QIVGSTDKQPLLETP--G-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR-L-GDSWYP  262 (300)
Q Consensus       188 ~~~~~~~d~~~~~~~--g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~-~-~g~~~~  262 (300)
                      ++|.+.+|++..++.  + +++++|++.+.+ +..+.+++++|+||+.++.|.||. +|.+|||+|++.++ + ||++++
T Consensus         1 ~~v~~~~~~~~~~~~~~~~~~~~krll~~~~-~~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g~~~~   78 (125)
T PRK13290          1 MIVRTLDEIEGTERDVKAGNWTSRRLLLKDD-GMGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATGEVHP   78 (125)
T ss_pred             CeEEEHHHccCcceeeecCCceEEEEEEecC-CCCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCCEEEE
Confidence            578889999999974  3 566777777643 477888999999999999754444 57999999999999 7 599999


Q ss_pred             ccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          263 VQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       263 v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      ++|||.++++++.+|++.|.  +++++|+-
T Consensus        79 L~aGD~i~~~~~~~H~~~N~--e~~~~l~v  106 (125)
T PRK13290         79 IRPGTMYALDKHDRHYLRAG--EDMRLVCV  106 (125)
T ss_pred             eCCCeEEEECCCCcEEEEcC--CCEEEEEE
Confidence            99999999999999999998  89999885

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.59  E-value=1.6e-14  Score=119.63  Aligned_cols=85  Identities=16%  Similarity=0.165  Sum_probs=73.0

Q ss_pred             ceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEE-EcC-CcEEEeccCcEEEeCCCCceEEeeCC
Q 022278           90 TLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLT-NAS-GVSSKLMVDSYTYLPPNFAHSLRAEG  167 (300)
Q Consensus        90 ~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~-v~g-g~~~~L~~Gds~yfpa~~~H~~~N~~  167 (300)
                      ...+++. +..+..|.++.++++||+..+.|.|..+|++|||+|+++++ + + |+++.|++||++|||++.+|+++|.+
T Consensus        22 ~~krll~-~~~~~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i-~~g~~~~L~aGD~i~~~~~~~H~~~N~e   99 (125)
T PRK13290         22 TSRRLLL-KDDGMGFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL-ATGEVHPIRPGTMYALDKHDRHYLRAGE   99 (125)
T ss_pred             eEEEEEE-ecCCCCEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc-CCCEEEEeCCCeEEEECCCCcEEEEcCC
Confidence            3444444 56678999999999999988777444468999999999999 8 6 99999999999999999999999999


Q ss_pred             eEEEEEEEe
Q 022278          168 SATLVVFER  176 (300)
Q Consensus       168 ~a~vl~v~~  176 (300)
                      ++++||+..
T Consensus       100 ~~~~l~v~t  108 (125)
T PRK13290        100 DMRLVCVFN  108 (125)
T ss_pred             CEEEEEEEC
Confidence            999999954

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.56  E-value=1.6e-14  Score=106.25  Aligned_cols=67  Identities=21%  Similarity=0.459  Sum_probs=63.0

Q ss_pred             EEEecCCcccCcceeeccc-eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          224 IMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       224 ~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      +++|+||+.++. |+|..+ +.+|||+|++.+.+||+++.+++||+++++++++|++.|.|+++++||.
T Consensus         2 ~~~~~pG~~~~~-h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~   69 (71)
T PF07883_consen    2 LVTLPPGGSIPP-HRHPGEDEFFYVLSGEGTLTVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLV   69 (71)
T ss_dssp             EEEEETTEEEEE-EEESSEEEEEEEEESEEEEEETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE
T ss_pred             EEEECCCCCCCC-EECCCCCEEEEEEECCEEEEEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEE
Confidence            578999999997 567777 9999999999999999999999999999999999999999999999986

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.55  E-value=5.3e-14  Score=116.55  Aligned_cols=89  Identities=24%  Similarity=0.393  Sum_probs=78.0

Q ss_pred             eeEEE-EeeCCCCCcceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEec
Q 022278          205 VFQLR-KLLPQAVPFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       205 ~~~~~-~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                      .+.++ .+++.+.+..+.+..++|+||+.++. |+|+ .++.+|||+|++.++++|+.+.+++||+|++++|+.||+.|.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~v~~~~G~~~~~-H~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~  105 (131)
T COG1917          27 VAVVKSRVLPRNEGENLSVVLVTFEPGAVIPW-HTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKAV  105 (131)
T ss_pred             ceEEEeeeccCCCCceEEEEEEEECCCccccc-ccCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeeccC
Confidence            33444 45577778889999999999999997 7887 779999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEee
Q 022278          283 GKTRTRYLLYKD  294 (300)
Q Consensus       283 G~e~~~fi~~kd  294 (300)
                      +++++.+|+...
T Consensus       106 ~~~~~~~l~v~~  117 (131)
T COG1917         106 EDEPMVLLLVFP  117 (131)
T ss_pred             CCCceeEEEEee
Confidence            999877776553

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.48  E-value=1.2e-13  Score=101.50  Aligned_cols=66  Identities=26%  Similarity=0.464  Sum_probs=61.2

Q ss_pred             EEEEcCCCcCCCCCCCce-EEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEE
Q 022278          108 LANMQENARSALPPHDVE-RFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF  174 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gE-Ef~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v  174 (300)
                      +++++||+..+.|.|..+ |++||++|++++.+ +|+++.|++||++++|++.+|.++|  ++++++++|
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V   70 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV   70 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE-ccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            678999997777878777 99999999999999 9999999999999999999999999  689999987

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=8e-13  Score=109.55  Aligned_cols=78  Identities=21%  Similarity=0.324  Sum_probs=70.7

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEee
Q 022278          217 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       217 ~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd  294 (300)
                      +..+.+..++++||+.++.++||.-.|.+|||+|+|.+++||+...|++||.+++|+|.+|.+.|+|..||++|+-..
T Consensus        33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~  110 (127)
T COG0662          33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQS  110 (127)
T ss_pred             CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEec
Confidence            346788899999999987766666778999999999999999999999999999999999999999999999998643

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=99.39  E-value=5.3e-12  Score=116.81  Aligned_cols=93  Identities=18%  Similarity=0.176  Sum_probs=80.5

Q ss_pred             CC-ceeEEEEeeCCCCC--cceEEEEEEecCCcccCcceee-ccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCce
Q 022278          202 PG-EVFQLRKLLPQAVP--FDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ  277 (300)
Q Consensus       202 ~g-~~~~~~~l~p~~~~--~~~~~~~~tl~PG~~~p~~~~H-~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H  277 (300)
                      +| .+++.+.|.+...+  ..|.+.+++++||+....+++| .+||.+|||+|+..++++|+++.+++||++|++++++|
T Consensus        37 p~~~~~~~~~l~~P~~g~~~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~~~~L~~Gd~~y~pa~~~H  116 (260)
T TIGR03214        37 PGFENTDIWILSRPKLGFAATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGETHELREGGYAYLPPGSKW  116 (260)
T ss_pred             CCCcccEEEEEcCCCCCCCCcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCE
Confidence            55 66788888855444  6789999999999876554444 56899999999999999999999999999999999999


Q ss_pred             eEEecCCccEEEEEEee
Q 022278          278 WYAALGKTRTRYLLYKD  294 (300)
Q Consensus       278 ~~~n~G~e~~~fi~~kd  294 (300)
                      .+.|.|+++++|++++-
T Consensus       117 ~~~N~~~~~a~~l~v~k  133 (260)
T TIGR03214       117 TLANAQAEDARFFLYKK  133 (260)
T ss_pred             EEEECCCCCEEEEEEEe
Confidence            99999999999999873

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=99.38  E-value=6e-12  Score=116.81  Aligned_cols=94  Identities=17%  Similarity=0.212  Sum_probs=81.6

Q ss_pred             cCC-ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceee-ccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCcee
Q 022278          201 TPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW  278 (300)
Q Consensus       201 ~~g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H-~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~  278 (300)
                      ++| ++...+.|.+.+.+..+.+.+++++||+....+.|| ..||.+|||+|+..+++||+++.+++||.++++++.+|.
T Consensus        41 lp~~~~~~~~~L~~~~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~~~~L~~GDsi~~p~~~~H~  120 (266)
T PRK11171         41 LPGWENTRAWVLARPGLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGKTHALSEGGYAYLPPGSDWT  120 (266)
T ss_pred             CCCCCCeEEEEEeCCCCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEE
Confidence            455 566777788766677788899999999987765444 568899999999999999999999999999999999999


Q ss_pred             EEecCCccEEEEEEee
Q 022278          279 YAALGKTRTRYLLYKD  294 (300)
Q Consensus       279 ~~n~G~e~~~fi~~kd  294 (300)
                      |.|.|++++++|+.+-
T Consensus       121 ~~N~g~~~a~~l~v~~  136 (266)
T PRK11171        121 LRNAGAEDARFHWIRK  136 (266)
T ss_pred             EEECCCCCEEEEEEEc
Confidence            9999999999998753

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=99.35  E-value=4.7e-11  Score=113.86  Aligned_cols=201  Identities=15%  Similarity=0.221  Sum_probs=137.0

Q ss_pred             ceEEEEecCCC-CC-----cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEE-EEEcCCcEEEeccCcEEEeCCCCceE
Q 022278           90 TLGAYLITPAM-GS-----HFVMYLANMQENARSALPPHDVERFIFVVQGSAM-LTNASGVSSKLMVDSYTYLPPNFAHS  162 (300)
Q Consensus        90 ~~~~~L~sp~~-g~-----~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~-l~v~gg~~~~L~~Gds~yfpa~~~H~  162 (300)
                      .++-+|..|.. |.     .+...+-.|+||.....|.|...-+.||++|+.. ..| ||+++.+++||.+..|+...|.
T Consensus        61 Rrvl~l~NP~~~g~~~~t~tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V-~g~~~~~~~gD~~~tP~w~wH~  139 (335)
T TIGR02272        61 RRVLVLENPGLRGQSSITTSLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAV-DGERTTMHPGDFIITPSWTWHD  139 (335)
T ss_pred             eEEEEEeCCCCCCccccchhHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEE-CCEEEeeeCCCEEEeCCCeeEe
Confidence            45556666663 31     3444577789999999999999999999999985 567 9999999999999999999999


Q ss_pred             EeeCCeEEEEEEEe-----------ec-cccC----------C---------CCcceeeccCCC-----CCCccc-----
Q 022278          163 LRAEGSATLVVFER-----------RY-ASLE----------N---------HITEQIVGSTDK-----QPLLET-----  201 (300)
Q Consensus       163 ~~N~~~a~vl~v~~-----------~y-~~~~----------g---------~~p~~~~~~~~d-----~~~~~~-----  201 (300)
                      ..|+...-++|..-           -| +..+          |         ..|-.....-..     .|+..+     
T Consensus       140 H~n~~d~~~~wld~lD~Pl~~~l~~~f~e~~~~~~~~~~~~~~~~~~~~g~~l~P~~~~~~~~~sP~~~ypw~~~~~aL~  219 (335)
T TIGR02272       140 HGNPGDEPMIWLDGLDIPLVQLFDCSFAEGYPEDQQPVTRPEGDSLARYGHNMLPVRHKRSDRSSPIFNYPYERSREALD  219 (335)
T ss_pred             cccCCCCcEEEEecCCHHHHHhhCcceeccccccccccccCCcchhhhcccCccccccccCCCCCCceecCcHHHHHHHH
Confidence            99955555777211           11 1110          0         011110000011     233221     


Q ss_pred             ------C--C-ceeEEEEeeCCCCCc---ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEE
Q 022278          202 ------P--G-EVFQLRKLLPQAVPF---DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVL  269 (300)
Q Consensus       202 ------~--g-~~~~~~~l~p~~~~~---~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i  269 (300)
                            +  + .++.++-.-|...+.   .+...+-.|.||..... |.|....++||++|+|...+||+..+.++||++
T Consensus       220 ~~~~~~~~~~~~g~~l~y~NP~TG~~~~pti~~~~q~L~~G~~t~~-~r~T~s~Vf~VieG~G~s~ig~~~~~W~~gD~f  298 (335)
T TIGR02272       220 DLTRTGEWDPWHGLKLRYVNPATGGYPMPTIGAFIQLLPKGFRTAT-YRSTDATVFCVVEGRGQVRIGDAVFRFSPKDVF  298 (335)
T ss_pred             HHHhccCCCCCceEEEEEeCCCCCCCcchhHHHHHhccCCCCCCCC-ccccccEEEEEEeCeEEEEECCEEEEecCCCEE
Confidence                  1  1 333443344654432   23333456677777764 799999999999999999999999999999999


Q ss_pred             EeCCCCceeEEecCCccEEEEEEee
Q 022278          270 WMAPFVPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       270 ~~~~~~~H~~~n~G~e~~~fi~~kd  294 (300)
                      .+|+...|...|.  ++...+.+-|
T Consensus       299 ~vPsW~~~~h~a~--~da~Lf~~~D  321 (335)
T TIGR02272       299 VVPSWHPVRFEAS--DDAVLFSFSD  321 (335)
T ss_pred             EECCCCcEecccC--CCeEEEEecC
Confidence            9999999988885  4566666554

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=99.32  E-value=1.8e-11  Score=107.29  Aligned_cols=87  Identities=14%  Similarity=0.170  Sum_probs=73.3

Q ss_pred             eEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278          206 FQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       206 ~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      +..+.|.+.+....+-+-+.+++||+..+.+++|..+|.+|||+|+..+++||+.+.+++||.++++++++|.+.|.|++
T Consensus        93 ~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~  172 (185)
T PRK09943         93 VSMKLVHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAG  172 (185)
T ss_pred             ceEEEeccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCC
Confidence            34444545444444555567899999877667888889999999999999999999999999999999999999999999


Q ss_pred             cEEEEEE
Q 022278          286 RTRYLLY  292 (300)
Q Consensus       286 ~~~fi~~  292 (300)
                      ++++|+.
T Consensus       173 ~~~~l~~  179 (185)
T PRK09943        173 ICRIISA  179 (185)
T ss_pred             CeEEEEE
Confidence            9999986

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.31  E-value=2.3e-11  Score=100.77  Aligned_cols=82  Identities=20%  Similarity=0.332  Sum_probs=69.3

Q ss_pred             EecCCCCCcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC--CeEEE
Q 022278           95 LITPAMGSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE--GSATL  171 (300)
Q Consensus        95 L~sp~~g~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~--~~a~v  171 (300)
                      +..+..+..+.+.+++++||+....|.|+ +++.+|||+|++++++ +|+.+.+++||++++|+|+.|.+.|.  ....+
T Consensus        34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~-~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~  112 (131)
T COG1917          34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL-EGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVL  112 (131)
T ss_pred             eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEe-cCCceEecCCCEEEECCCCeeeeccCCCCceeE
Confidence            33444678899999999999999999897 9999999999999999 89999999999999999999999983  33344


Q ss_pred             EEEEee
Q 022278          172 VVFERR  177 (300)
Q Consensus       172 l~v~~~  177 (300)
                      |.+...
T Consensus       113 l~v~~~  118 (131)
T COG1917         113 LLVFPL  118 (131)
T ss_pred             EEEeee
Confidence            544333

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.29  E-value=1.8e-11  Score=122.09  Aligned_cols=77  Identities=18%  Similarity=0.236  Sum_probs=69.6

Q ss_pred             CCCCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEE
Q 022278           99 AMGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE  175 (300)
Q Consensus        99 ~~g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~  175 (300)
                      ..+.+|++.+++++||++.+.+ +|.++|++||++|++++++ +|+++.|.+||++|||++.+|+|+|  ++++++|||.
T Consensus       380 ~~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i-dg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~  458 (478)
T PRK15460        380 DAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI-DGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVR  458 (478)
T ss_pred             cCCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence            3467899999999999977555 5677899999999999999 9999999999999999999999999  7899999994


Q ss_pred             e
Q 022278          176 R  176 (300)
Q Consensus       176 ~  176 (300)
                      .
T Consensus       459 ~  459 (478)
T PRK15460        459 S  459 (478)
T ss_pred             c
Confidence            3

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.28  E-value=1.7e-11  Score=122.23  Aligned_cols=76  Identities=13%  Similarity=0.218  Sum_probs=67.9

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          217 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       217 ~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +..+.+..++++||+.++.|.||..+|.+|||+|++.+++||+.+.+++||.++++++.+|++.|.|++++++|+-
T Consensus       373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v  448 (468)
T TIGR01479       373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEV  448 (468)
T ss_pred             CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            4568889999999999887655544556799999999999999999999999999999999999999999999875

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.27  E-value=2e-11  Score=121.70  Aligned_cols=76  Identities=11%  Similarity=0.175  Sum_probs=68.2

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          217 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       217 ~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +..+.+.+++++||++++.+.||.-+|.+||++|++.+++||+++.+++||.++++++.+|+++|.|++|+++|+-
T Consensus       382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V  457 (478)
T PRK15460        382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEV  457 (478)
T ss_pred             CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            4568889999999998866555555578889999999999999999999999999999999999999999999974

>smart00835 Cupin_1 Cupin

Probab=99.27  E-value=5.3e-11  Score=100.57  Aligned_cols=78  Identities=17%  Similarity=0.320  Sum_probs=69.6

Q ss_pred             cceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEeCCE------EEEccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDS------WYPVQAGDVLWMAPFVPQWYAALGKTRTRYL  290 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~~g~------~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  290 (300)
                      .++.+..++++||+..+. |.|. .++.+||++|++.+.++++      .+.+++||+++++++.+|++.|.|+++++|+
T Consensus        28 ~~~~~~~~~i~pg~~~~~-h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l  106 (146)
T smart00835       28 LGISAARVNLEPGGMLPP-HYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFV  106 (146)
T ss_pred             CceEEEEEEecCCcCcCC-eeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEE
Confidence            368899999999999996 5554 6689999999999999876      8999999999999999999999999999999


Q ss_pred             EEeecC
Q 022278          291 LYKDVN  296 (300)
Q Consensus       291 ~~kd~n  296 (300)
                      ++..-+
T Consensus       107 ~~~~~~  112 (146)
T smart00835      107 AFNTND  112 (146)
T ss_pred             EEecCC
Confidence            986533

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.22  E-value=4.1e-11  Score=101.54  Aligned_cols=82  Identities=18%  Similarity=0.300  Sum_probs=71.0

Q ss_pred             ecCCCC-CcEEEEEEEEcCCCcCC-CC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC--CceEEee--CCe
Q 022278           96 ITPAMG-SHFVMYLANMQENARSA-LP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA--EGS  168 (300)
Q Consensus        96 ~sp~~g-~~f~~~lv~l~PG~~~~-~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~--~~H~~~N--~~~  168 (300)
                      +..+.| ++|-..+.+++||+.+. .| ++..|||+|||+|++++.+ |+.++.|++||++=||+|  ..|.+.|  +..
T Consensus        33 lG~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~-d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~  111 (161)
T COG3837          33 LGDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE-DGGETRLRPGDSAGFPAGVGNAHHLINRSDVI  111 (161)
T ss_pred             hhhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEE-CCeeEEecCCceeeccCCCcceeEEeecCCce
Confidence            344556 78999999999999874 45 5677999999999999999 999999999999999999  9999999  678


Q ss_pred             EEEEEEEeec
Q 022278          169 ATLVVFERRY  178 (300)
Q Consensus       169 a~vl~v~~~y  178 (300)
                      +++|.|..+-
T Consensus       112 ~~yL~vG~r~  121 (161)
T COG3837         112 LRYLEVGTRE  121 (161)
T ss_pred             EEEEEecccc
Confidence            8999986654

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.22  E-value=7e-11  Score=117.77  Aligned_cols=76  Identities=20%  Similarity=0.284  Sum_probs=66.5

Q ss_pred             CCCCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEE
Q 022278           99 AMGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE  175 (300)
Q Consensus        99 ~~g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~  175 (300)
                      ..+.+|.+..++++||++.+.| +|..+|++||++|++++++ ||+++.|++||++|+|++.+|+++|  +++++++|+.
T Consensus       371 ~~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~-dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~  449 (468)
T TIGR01479       371 DQGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI-GDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ  449 (468)
T ss_pred             ecCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence            3467899999999999987655 3334566699999999999 9999999999999999999999999  7899999994

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=99.21  E-value=3.6e-10  Score=103.71  Aligned_cols=196  Identities=15%  Similarity=0.130  Sum_probs=107.4

Q ss_pred             cceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE---EEeccCcEEEeCCCCceEEee
Q 022278           89 NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS---SKLMVDSYTYLPPNFAHSLRA  165 (300)
Q Consensus        89 ~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~---~~L~~Gds~yfpa~~~H~~~N  165 (300)
                      +.....|-..........+++.+++|-++++|.|...+-+|||+|.+  .. |+..   .-|.+|++.+.|+|..|.-..
T Consensus        21 ~~~~~~L~gd~~~~g~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~--~~-~~~~a~~~~l~~Gsy~~~PaG~~h~~~~   97 (251)
T PF14499_consen   21 GPGAAVLWGDPTKDGPSGMRVKFPAGFSSPPHIHNADYRGTVISGEL--HN-GDPKAAAMWLPAGSYWFQPAGEPHITAA   97 (251)
T ss_dssp             --EEEEEEEE--TTS-EEEEEEE-TT-EE--BEESS-EEEEEEESEE--EE-TTEE-----E-TTEEEEE-TT-EEEETT
T ss_pred             CcceeeeecCcccCCcceEEEEcCCCccCCCcceeeeEEEEEEEeEE--Ec-CCCcccceecCCCceEeccCCCceeeec
Confidence            34455555544344566678999999998999999999999999975  45 6554   349999999999998886665


Q ss_pred             CCeEEEEEE---Eeecc--ccC-----CCCcce------eeccCCCCCCcccC-C--ceeEEEEeeC--CCCCcceEEEE
Q 022278          166 EGSATLVVF---ERRYA--SLE-----NHITEQ------IVGSTDKQPLLETP-G--EVFQLRKLLP--QAVPFDFNIHI  224 (300)
Q Consensus       166 ~~~a~vl~v---~~~y~--~~~-----g~~p~~------~~~~~~d~~~~~~~-g--~~~~~~~l~p--~~~~~~~~~~~  224 (300)
                      .+...++|+   .-+|.  |.+     |.+|..      ++-+-+|++|...+ +  .++.+..|-.  .+......|.+
T Consensus        98 ~~~~~~~~~e~g~gp~~v~p~~~~~~~~e~p~n~~~~~ivwld~~dl~W~~~~~~~~~g~~~a~Lwgd~~~g~~~gll~k  177 (251)
T PF14499_consen   98 EGETNLLFIEIGEGPYDVKPSEEAFDNGERPINVDKDNIVWLDASDLEWISAPPGPPPGAQIAFLWGDPNTGQYTGLLLK  177 (251)
T ss_dssp             S-EE-EEEEE-S---EE---------SS--TT--GGG-EEEEECCCS--EE-SSSTT-SEEEEEEEE-TTS-EE-EEEEE
T ss_pred             cCccEEEEEEeCCCccccccccccccccccccccccccceEeccccCCccccCCCCCCcceEEEEecCCCCCceeeEEEE
Confidence            444445555   33443  332     334444      34467778888776 3  5667777753  33223344334


Q ss_pred             EEecCCcccCcceeeccceEEEEEEeeEEEEe--CCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          225 MDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       225 ~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~--~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                         -|++..+..++|.-++..|+++|+..|..  +++...+.+|++.+-+....|+.. .+++++.+++
T Consensus       178 ---LPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~~~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyI  242 (251)
T PF14499_consen  178 ---LPAGFTGRIHTHASNERAVVISGELDYQSYGASNFGTLDPGSYFGSPGHITHGIF-ITEDECVLYI  242 (251)
T ss_dssp             ----SSEE--SEEE--S-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--E-------EESS-EEEEE
T ss_pred             ---cCCCCcCceeccCCceEEEEEEeEEEEeecccCCCccccCCcccccCCccccccc-ccCCCEEEEE
Confidence               48888888899999999999999999944  467788999999999999999999 7777776654

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.6e-10  Score=95.69  Aligned_cols=74  Identities=16%  Similarity=0.322  Sum_probs=63.3

Q ss_pred             CCCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEE
Q 022278          100 MGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF  174 (300)
Q Consensus       100 ~g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v  174 (300)
                      .+..+..-.+.+.||+....+ +|..+|+.||++|+..+++ +|++..|++||++|+|+|.+|+++|  +.+..++.+
T Consensus        32 ~~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~-~~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei  108 (127)
T COG0662          32 AGDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI-GGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV  108 (127)
T ss_pred             cCCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence            356788889999999986554 4448999999999999999 9999999999999999999999999  445666655

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=99.20  E-value=1e-10  Score=99.95  Aligned_cols=75  Identities=16%  Similarity=0.268  Sum_probs=69.5

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          217 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       217 ~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      +..+.++++++.||..+.++.|+.-.|..+|++|.|.+.+||+.+.+++||.+|+|+|+.|.+.|.|++|+++|=
T Consensus        60 ~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IE  134 (151)
T PF01050_consen   60 GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIE  134 (151)
T ss_pred             cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEE
Confidence            345889999999999999976777778899999999999999999999999999999999999999999999984

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=99.18  E-value=2.4e-10  Score=101.16  Aligned_cols=82  Identities=21%  Similarity=0.392  Sum_probs=67.2

Q ss_pred             eeCCCCCcceEEEEEEecCCccc-----Ccceeec---cceEEEEEEeeEEEEeCCE-----EEEccCCcEEEeCCCCce
Q 022278          211 LLPQAVPFDFNIHIMDFQPGDFL-----NVKEVHY---NQHGLLLLEGQGIYRLGDS-----WYPVQAGDVLWMAPFVPQ  277 (300)
Q Consensus       211 l~p~~~~~~~~~~~~tl~PG~~~-----p~~~~H~---~eh~~~iL~G~G~~~~~g~-----~~~v~~GD~i~~~~~~~H  277 (300)
                      ..+.....++.+.+.++.||...     ...|.|.   ..|.+|+|+|+|.+.+++.     +++++|||++++|+|..|
T Consensus        59 ~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H  138 (191)
T PRK04190         59 IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAH  138 (191)
T ss_pred             ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcE
Confidence            34544456788999999999962     1124553   3489999999999999754     799999999999999999


Q ss_pred             eEEecCCccEEEEEE
Q 022278          278 WYAALGKTRTRYLLY  292 (300)
Q Consensus       278 ~~~n~G~e~~~fi~~  292 (300)
                      .+.|+|++|++|++.
T Consensus       139 ~~iN~G~epl~fl~v  153 (191)
T PRK04190        139 RSVNTGDEPLVFLAC  153 (191)
T ss_pred             EeEECCCCCEEEEEE
Confidence            999999999999984

>smart00835 Cupin_1 Cupin

Probab=99.10  E-value=7.4e-10  Score=93.55  Aligned_cols=75  Identities=15%  Similarity=0.210  Sum_probs=66.6

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCc------EEEeccCcEEEeCCCCceEEee--CCeEEE
Q 022278          101 GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGV------SSKLMVDSYTYLPPNFAHSLRA--EGSATL  171 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~------~~~L~~Gds~yfpa~~~H~~~N--~~~a~v  171 (300)
                      +.++.+..++++||+....|.|. .+|++||++|++++.+ +++      ++.+++||++++|++..|.+.|  ++++++
T Consensus        27 ~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~  105 (146)
T smart00835       27 GLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGV-VDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEF  105 (146)
T ss_pred             cCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEE-EeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEE
Confidence            45799999999999998888664 8999999999999998 665      8999999999999999999998  678999


Q ss_pred             EEEEe
Q 022278          172 VVFER  176 (300)
Q Consensus       172 l~v~~  176 (300)
                      +++..
T Consensus       106 l~~~~  110 (146)
T smart00835      106 VAFNT  110 (146)
T ss_pred             EEEec
Confidence            88744

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=5.9e-10  Score=90.42  Aligned_cols=76  Identities=18%  Similarity=0.308  Sum_probs=66.8

Q ss_pred             CCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC---EEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          216 VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD---SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       216 ~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g---~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      ++....|+.+|+.||+....|+|...|-.+|+|+|+..++-++   ....++|||++|+|||+||+-.|.+++|++-++
T Consensus        42 Gas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vI  120 (142)
T COG4101          42 GASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVI  120 (142)
T ss_pred             ccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEE
Confidence            3457889999999999998766666777799999999999997   567899999999999999999999999987654

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.05  E-value=9.1e-10  Score=93.41  Aligned_cols=81  Identities=17%  Similarity=0.211  Sum_probs=71.8

Q ss_pred             cceEEEEEEecCCcccCcceee-ccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCC--CceeEEecCCccEEEEEEee
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPF--VPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H-~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~--~~H~~~n~G~e~~~fi~~kd  294 (300)
                      .++-+++..++||...-..|-| .++|-+|||+|++.++.||.++.|+|||++=.++|  .-|.+.|.|+.+++||+--|
T Consensus        40 ~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~  119 (161)
T COG3837          40 KRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGGETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGT  119 (161)
T ss_pred             hhcccceEEeCCCCccccccccccCceEEEEEcCceEEEECCeeEEecCCceeeccCCCcceeEEeecCCceEEEEEecc
Confidence            5788999999999986554444 56677899999999999999999999999999999  88999999999999999888


Q ss_pred             cCCC
Q 022278          295 VNRN  298 (300)
Q Consensus       295 ~nr~  298 (300)
                      -+++
T Consensus       120 r~~~  123 (161)
T COG3837         120 REPD  123 (161)
T ss_pred             cccc
Confidence            7664

>PLN00212 glutelin; Provisional

Probab=99.00  E-value=8.1e-08  Score=95.97  Aligned_cols=74  Identities=11%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             ceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEe---CCE-EE--EccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL---GDS-WY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~---~g~-~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      ++.+.+..|.||+..+. |.|... ++.||++|+|.+-+   +|. .+  .|++||++++|.|.+|..++. ++.|.|++
T Consensus       347 ~LSa~rv~L~~gam~~P-Hwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v~  424 (493)
T PLN00212        347 QMSATRVNLYQNALLSP-FWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYIA  424 (493)
T ss_pred             CeeEEEEEEcCCcccCC-eecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeec-CCceEEEE
Confidence            57788999999999986 677766 66899999998875   222 22  799999999999999998775 67799999


Q ss_pred             Eee
Q 022278          292 YKD  294 (300)
Q Consensus       292 ~kd  294 (300)
                      +|-
T Consensus       425 F~t  427 (493)
T PLN00212        425 FKT  427 (493)
T ss_pred             eec
Confidence            993

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.99  E-value=2.7e-09  Score=86.62  Aligned_cols=82  Identities=20%  Similarity=0.314  Sum_probs=65.8

Q ss_pred             CCCC-cEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCc---EEEeccCcEEEeCCCCceEEee--CCeEEE
Q 022278           99 AMGS-HFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGV---SSKLMVDSYTYLPPNFAHSLRA--EGSATL  171 (300)
Q Consensus        99 ~~g~-~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~---~~~L~~Gds~yfpa~~~H~~~N--~~~a~v  171 (300)
                      ..|+ ...|-+++|+||++...|.|+ -|..+|||+|+...+. |++   ....++||+||+||+++|.-.|  ++++..
T Consensus        40 tvGas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~-G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~  118 (142)
T COG4101          40 TVGASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWY-GNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSA  118 (142)
T ss_pred             hcccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeee-ccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEE
Confidence            4464 799999999999999888654 5888999999999999 653   4689999999999999999888  556665


Q ss_pred             EEEEeeccccCC
Q 022278          172 VVFERRYASLEN  183 (300)
Q Consensus       172 l~v~~~y~~~~g  183 (300)
                      +++  |-.|.+.
T Consensus       119 vIa--RsDp~~~  128 (142)
T COG4101         119 VIA--RSDPNPQ  128 (142)
T ss_pred             EEE--ccCCCCC
Confidence            555  4444433

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=98.94  E-value=7.2e-09  Score=100.43  Aligned_cols=86  Identities=13%  Similarity=0.199  Sum_probs=70.7

Q ss_pred             EEEEecCCCC--CcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEc----CCcEEEeccCcEEEeCCCCceEEe
Q 022278           92 GAYLITPAMG--SHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNA----SGVSSKLMVDSYTYLPPNFAHSLR  164 (300)
Q Consensus        92 ~~~L~sp~~g--~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~----gg~~~~L~~Gds~yfpa~~~H~~~  164 (300)
                      ++.+-++...  +.|.+..++|+||+..+.|.|. .+|++||++|++++++.    +++++.|++||.+|+|+|..|+++
T Consensus       231 ~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~  310 (367)
T TIGR03404       231 VRIADSTNFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVE  310 (367)
T ss_pred             EEEEChhhccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEE
Confidence            3444444333  4689999999999999999666 68999999999999982    257899999999999999999999


Q ss_pred             e--CCeEEEEEEEee
Q 022278          165 A--EGSATLVVFERR  177 (300)
Q Consensus       165 N--~~~a~vl~v~~~  177 (300)
                      |  ++++++|++-+-
T Consensus       311 N~G~e~l~fL~if~s  325 (367)
T TIGR03404       311 NTGDETLVFLEVFKA  325 (367)
T ss_pred             ECCCCCEEEEEEECC
Confidence            9  678999998443

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.92  E-value=5.3e-09  Score=88.03  Aligned_cols=77  Identities=19%  Similarity=0.295  Sum_probs=54.7

Q ss_pred             CC-CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC---------cEEEeccCcEEEeCCCCceEEee-C--
Q 022278          100 MG-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG---------VSSKLMVDSYTYLPPNFAHSLRA-E--  166 (300)
Q Consensus       100 ~g-~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg---------~~~~L~~Gds~yfpa~~~H~~~N-~--  166 (300)
                      .| +.+++++-++.||..++.|.|..||.++||+|+.++.+ .+         +++...+++++++|++..|++.| +  
T Consensus        39 hGmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l-~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~  117 (167)
T PF02041_consen   39 HGMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYL-ASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEH  117 (167)
T ss_dssp             H--SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE---SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SS
T ss_pred             cCceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEE-ecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCC
Confidence            35 68999999999999999999999999999999999998 32         35889999999999999999998 3  


Q ss_pred             CeEEEEEEEee
Q 022278          167 GSATLVVFERR  177 (300)
Q Consensus       167 ~~a~vl~v~~~  177 (300)
                      ++.+++++.+|
T Consensus       118 eDlqvlViiSr  128 (167)
T PF02041_consen  118 EDLQVLVIISR  128 (167)
T ss_dssp             S-EEEEEEEES
T ss_pred             cceEEEEEecC
Confidence            78999998654

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.84  E-value=2.3e-08  Score=84.21  Aligned_cols=103  Identities=13%  Similarity=0.142  Sum_probs=61.6

Q ss_pred             ceeeccCCCCCCcccCCceeEEEEeeCC---CCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCE----
Q 022278          187 EQIVGSTDKQPLLETPGEVFQLRKLLPQ---AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS----  259 (300)
Q Consensus       187 ~~~~~~~~d~~~~~~~g~~~~~~~l~p~---~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~----  259 (300)
                      -.++.|++++|...+.-++ ...+-+..   .+-.++.|=.-||.||..+|. |.|.-||.++||+|+|...+.+.    
T Consensus         9 ~~~Vr~iselpq~~ygr~G-LsH~TvAGa~~hGmkevEVwlQTfAPG~~TPi-HRHsCEEVFvVLkG~GTl~l~~~~~~~   86 (167)
T PF02041_consen    9 LPLVRNISELPQDNYGRPG-LSHITVAGALLHGMKEVEVWLQTFAPGSATPI-HRHSCEEVFVVLKGSGTLYLASSHEKY   86 (167)
T ss_dssp             --SEEEGGGS--B-TT-TT-EEEEEEE-HHHH--SSEEEEEEEE-TT-B--E-EEESS-EEEEEEE--EEEEE--SSSSS
T ss_pred             CceeEEhhhCccccccCCC-cceEEeehhhhcCceeeeEEeeeecCCCCCCC-ccccccEEEEEEecceEEEEecccccC
Confidence            4578899999988874333 22222222   233567888899999999997 89999999999999999999853    


Q ss_pred             -----EEEccCCcEEEeCCCCceeEEecCC-ccEEEEE
Q 022278          260 -----WYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLL  291 (300)
Q Consensus       260 -----~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~  291 (300)
                           ++++.++|.+.||+|+.|++.|++. |++..++
T Consensus        87 pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlV  124 (167)
T PF02041_consen   87 PGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLV  124 (167)
T ss_dssp             --S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEE
T ss_pred             CCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEE
Confidence                 5889999999999999999999995 8877665

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=98.81  E-value=3.3e-08  Score=83.27  Aligned_cols=89  Identities=18%  Similarity=0.298  Sum_probs=65.6

Q ss_pred             EEEEeeCCCCC-----cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEE--eCC--------EEEE--ccCCcEE
Q 022278          207 QLRKLLPQAVP-----FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR--LGD--------SWYP--VQAGDVL  269 (300)
Q Consensus       207 ~~~~l~p~~~~-----~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~--~~g--------~~~~--v~~GD~i  269 (300)
                      .++.+.+.+..     ..++++..+++||+.... |.|...+.+||++|+|++.  ..+        ....  +++||++
T Consensus        16 ~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~P-h~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~   94 (144)
T PF00190_consen   16 RIREADSEDFPILLGLNGVAVRRVLIEPGGLRAP-HYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVF   94 (144)
T ss_dssp             EEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEE-EEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEE
T ss_pred             EEEEEChhhCcceecccceEEEeeehhcCCccce-eEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccce
Confidence            45556655531     467888899999999986 5556668999999999943  232        3444  9999999


Q ss_pred             EeCCCCceeEEecC-CccEEEEEEeecC
Q 022278          270 WMAPFVPQWYAALG-KTRTRYLLYKDVN  296 (300)
Q Consensus       270 ~~~~~~~H~~~n~G-~e~~~fi~~kd~n  296 (300)
                      ++|+|.+||+.|+| ++.+.++++...+
T Consensus        95 ~vP~G~~h~~~n~~~~~~~~~~~f~~~~  122 (144)
T PF00190_consen   95 VVPAGHPHWIINDGDDEALVLIIFDTNN  122 (144)
T ss_dssp             EE-TT-EEEEEECSSSSEEEEEEEEESS
T ss_pred             eeccceeEEEEcCCCCCCEEEEEEECCC
Confidence            99999999999999 5667777766543

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.81  E-value=3e-08  Score=85.15  Aligned_cols=69  Identities=23%  Similarity=0.366  Sum_probs=59.0

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEEc-CCc--EEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccc
Q 022278          112 QENARSALPPHDVERFIFVVQGSAMLTNA-SGV--SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYAS  180 (300)
Q Consensus       112 ~PG~~~~~~~h~gEEf~yVLeG~v~l~v~-gg~--~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~  180 (300)
                      .||.+...|.|+++|++|||+|++.+.+. +|+  ...|++||++.+|+|++|+....+.+..|+|+++=.+
T Consensus        36 Gpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~  107 (159)
T TIGR03037        36 GPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQ  107 (159)
T ss_pred             CCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCC
Confidence            56666777888899999999999999772 343  8999999999999999999998888999999877554

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=98.73  E-value=7.5e-07  Score=82.66  Aligned_cols=167  Identities=15%  Similarity=0.149  Sum_probs=106.4

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC-cEEEeccC--------cEEEeCCCCceEEeeCCeEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG-VSSKLMVD--------SYTYLPPNFAHSLRAEGSATLV  172 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg-~~~~L~~G--------ds~yfpa~~~H~~~N~~~a~vl  172 (300)
                      +-+..-+++|++|........+.|-.+..|+|++++++ +| +.+.|..-        |++|+|.|..-.+.+.+.+++.
T Consensus        25 ~~~~~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~-~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~  103 (261)
T PF04962_consen   25 MYMGFGVLRLEAGESLEFELERRELGVVNLGGKATVTV-DGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFA  103 (261)
T ss_dssp             CCBECCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEE-TTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEE
T ss_pred             cccceEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEe-CCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEE
Confidence            33444478899988776666777888999999999999 87 78899998        9999999999999987779999


Q ss_pred             EEEeeccccCCCCcceeeccCCCCCCcccCC--ceeEEEEeeCC-CCCcceEEEEEEecCCcc---cCcceeecc-----
Q 022278          173 VFERRYASLENHITEQIVGSTDKQPLLETPG--EVFQLRKLLPQ-AVPFDFNIHIMDFQPGDF---LNVKEVHYN-----  241 (300)
Q Consensus       173 ~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g--~~~~~~~l~p~-~~~~~~~~~~~tl~PG~~---~p~~~~H~~-----  241 (300)
                      +.+.+.   +..-|..++. .+|++......  ....++.++.. ....+..+--.++.||+.   .| .|+|..     
T Consensus       104 ~~sapa---~~~~p~~~i~-~~dv~~~~~G~~~~~R~V~~~i~~~~~~~~~Lv~get~~~~G~WsSyP-PH~Hd~~~~~~  178 (261)
T PF04962_consen  104 VCSAPA---HRDYPPRLIT-PEDVPVEIRGAGNNSRTVRNIIDPNVPPASRLVVGETITPGGNWSSYP-PHKHDRRMEPD  178 (261)
T ss_dssp             EEEEE----SS----EEE--TTTSEEEEESSGGGTEEEEEEESTTT---SS-EEEEEEETTT-EES-S-EEE-CCEEEES
T ss_pred             EEcccc---CCCCCCEEEC-HHHCCeEEecCCCCcEEEEEeeCCCCcccceEEEEEEEeCCCccCCcC-CccCCCcCCCc
Confidence            875443   4433555555 44565555432  22355566644 433444444455577764   55 478877     


Q ss_pred             ----ceEEEEE----EeeEE---EEe---CCEEEEccCCcEEEeCCC
Q 022278          242 ----QHGLLLL----EGQGI---YRL---GDSWYPVQAGDVLWMAPF  274 (300)
Q Consensus       242 ----eh~~~iL----~G~G~---~~~---~g~~~~v~~GD~i~~~~~  274 (300)
                          ||+||..    +|-|.   |+.   .++-+.|+-||++.+|+|
T Consensus       179 e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~g  225 (261)
T PF04962_consen  179 ETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSG  225 (261)
T ss_dssp             EECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTT
T ss_pred             cccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCC
Confidence                7787763    25554   332   257889999999999999

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.72  E-value=6.4e-08  Score=84.31  Aligned_cols=69  Identities=25%  Similarity=0.373  Sum_probs=59.2

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEEc-CC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccc
Q 022278          112 QENARSALPPHDVERFIFVVQGSAMLTNA-SG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYAS  180 (300)
Q Consensus       112 ~PG~~~~~~~h~gEEf~yVLeG~v~l~v~-gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~  180 (300)
                      -||.+...|.|++||++|+|+|++.|.+. +|  +...|++||++.+|+|++|+....+.+..|+|++.-.+
T Consensus        42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~  113 (177)
T PRK13264         42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPE  113 (177)
T ss_pred             cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCC
Confidence            56767777889999999999999999982 34  58999999999999999999988788899999776443

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.69  E-value=1.7e-07  Score=80.23  Aligned_cols=73  Identities=18%  Similarity=0.250  Sum_probs=64.9

Q ss_pred             CCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEE
Q 022278          101 GSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF  174 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v  174 (300)
                      +..+..-.+++.||.+...+ ++...|.-+|++|+.++++ +++.+.+++||++|+|+|..|++.|  +.+..++=|
T Consensus        60 ~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~-~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEV  135 (151)
T PF01050_consen   60 GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL-DDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEV  135 (151)
T ss_pred             cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE-CCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEEE
Confidence            55788899999999998877 4567899999999999999 9999999999999999999999999  456677666

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.68  E-value=2.1e-07  Score=86.58  Aligned_cols=184  Identities=14%  Similarity=0.186  Sum_probs=126.8

Q ss_pred             EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccc-------
Q 022278          108 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYAS-------  180 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~-------  180 (300)
                      +--|.||...+.|.|..--+-||+||+...++.+|+...+++||++.-|++.-|---|...--++|..--=.|       
T Consensus        96 lQlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdGer~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDiplv~~l~~  175 (351)
T COG3435          96 LQLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDGERTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDIPLVNSLGA  175 (351)
T ss_pred             hheecCcccCCcccccccceEEEEeccceeEeecCceeeccCCCEEEccCceeccCCCCCCCceEEEcccchHHHHhhcc
Confidence            4456899988899999999999999999877559999999999999999999997777333334444221111       


Q ss_pred             ------------c---CC-CCcc--eeeccCCC---C--------C----------------CcccCCceeEEEEeeCCC
Q 022278          181 ------------L---EN-HITE--QIVGSTDK---Q--------P----------------LLETPGEVFQLRKLLPQA  215 (300)
Q Consensus       181 ------------~---~g-~~p~--~~~~~~~d---~--------~----------------~~~~~g~~~~~~~l~p~~  215 (300)
                                  .   ++ +-+.  .-+..+++   -        +                ..+.  ++..++-.-|..
T Consensus       176 gFfe~~~e~~q~v~~~~~d~~ar~~~~~rP~~~r~~~~~SPlf~Y~w~~t~eAL~~la~~e~~dp~--dG~~~ryvNP~T  253 (351)
T COG3435         176 GFFEEHPEEQQPVTRPEGDSLARYGPGMRPLRHRWGKPYSPLFNYAWDRTREALERLARLEEPDPF--DGYKMRYVNPVT  253 (351)
T ss_pred             cccccCchhcCcccCCCCCchhhcCCCccccccCCCCCCCcccccccccHHHHHHHHHhccCCCCC--CcceEEEecCCC
Confidence                        0   00 0000  00000111   0        1                1112  234555555654


Q ss_pred             CCcce---EEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          216 VPFDF---NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       216 ~~~~~---~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      ++.-|   .--.--|.||-+. ..|+|...-+|.|.+|.|...+||+.+.-.+||++.+|+-..|.+.|. .++...++|
T Consensus       254 Gg~~mptI~a~mqlL~~Gf~~-~~~r~t~s~iy~V~eGsg~~~Ig~~rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsf  331 (351)
T COG3435         254 GGYAMPTIGAFMQLLPPGFHG-KAHRHTDSTIYHVVEGSGYTIIGGERFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSF  331 (351)
T ss_pred             CCCcCchHHHHHHhcCCcccC-CceeccCCEEEEEEecceeEEECCEEeeccCCCEEEccCcceeecccC-CcceEEEec
Confidence            44321   1111124455554 568999999999999999999999999999999999999999999997 788999999


Q ss_pred             eec
Q 022278          293 KDV  295 (300)
Q Consensus       293 kd~  295 (300)
                      .|-
T Consensus       332 sD~  334 (351)
T COG3435         332 SDR  334 (351)
T ss_pred             CCc
Confidence            884

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.67  E-value=2.8e-07  Score=83.31  Aligned_cols=85  Identities=16%  Similarity=0.174  Sum_probs=64.1

Q ss_pred             eeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCC
Q 022278          205 VFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       205 ~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      .+....++..+.+..|..-.|+++- ++.+  .++.+.|..|||+|+..+++||+.+.++|||++|+|+|..|.|.+.++
T Consensus       142 ~v~~~d~~~~~d~s~m~aGf~~~~~-~sf~--wtl~~dEi~YVLEGe~~l~IdG~t~~l~pGDvlfIPkGs~~hf~tp~~  218 (233)
T PRK15457        142 CVGLTDLVTGDDGSSMAAGFMQWEN-AFFP--WTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPSS  218 (233)
T ss_pred             cEEeeeeeccCCCCceeeEEEEEec-Cccc--eeccceEEEEEEEeEEEEEECCEEEEeCCCcEEEECCCCeEEecCCCC
Confidence            3344455544445666666777764 5554  467777899999999999999999999999999999999977766665


Q ss_pred             ccEEEEEE
Q 022278          285 TRTRYLLY  292 (300)
Q Consensus       285 e~~~fi~~  292 (300)
                      ..+.|+.|
T Consensus       219 aRflyV~~  226 (233)
T PRK15457        219 VRFLYVAW  226 (233)
T ss_pred             eeEEEEEe
Confidence            56655554

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.65  E-value=9.2e-08  Score=76.96  Aligned_cols=62  Identities=21%  Similarity=0.336  Sum_probs=46.0

Q ss_pred             CCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          229 PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       229 PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      |+-..+. |.|..-+..||++|+|.+.+||+.+.|+|||++|++|+.+|.+...++++++++.
T Consensus        12 ~~~~~~~-h~h~~~~i~~v~~G~~~~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~   73 (136)
T PF02311_consen   12 PNFEFPP-HWHDFYEIIYVLSGEGTLHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYW   73 (136)
T ss_dssp             TT-SEEE-ETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEE
T ss_pred             CCCccCC-EECCCEEEEEEeCCEEEEEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEE
Confidence            3444443 6777778999999999999999999999999999999999999999977777554

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.65  E-value=4.1e-07  Score=80.68  Aligned_cols=76  Identities=11%  Similarity=0.161  Sum_probs=62.3

Q ss_pred             CCCCcEEEEEEEEcCCCc------CCCCCC---CceEEEEEEECEEEEEEcCCc-----EEEeccCcEEEeCCCCceEEe
Q 022278           99 AMGSHFVMYLANMQENAR------SALPPH---DVERFIFVVQGSAMLTNASGV-----SSKLMVDSYTYLPPNFAHSLR  164 (300)
Q Consensus        99 ~~g~~f~~~lv~l~PG~~------~~~~~h---~gEEf~yVLeG~v~l~v~gg~-----~~~L~~Gds~yfpa~~~H~~~  164 (300)
                      ..+..+..-+++|+||..      +..|-|   +..|++|||+|+..+.+ +++     .+.+++||.+++|++..|++.
T Consensus        63 ~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l-~~~~G~~~~~~v~pGd~v~IPpg~~H~~i  141 (191)
T PRK04190         63 ETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLL-QDPEGEARWIEMEPGTVVYVPPYWAHRSV  141 (191)
T ss_pred             CcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEE-ecCCCcEEEEEECCCCEEEECCCCcEEeE
Confidence            345678889999999985      333545   34599999999999998 543     689999999999999999999


Q ss_pred             e--CCeEEEEEEE
Q 022278          165 A--EGSATLVVFE  175 (300)
Q Consensus       165 N--~~~a~vl~v~  175 (300)
                      |  +++.+++.+-
T Consensus       142 N~G~epl~fl~v~  154 (191)
T PRK04190        142 NTGDEPLVFLACY  154 (191)
T ss_pred             ECCCCCEEEEEEE
Confidence            9  6788888763

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=98.63  E-value=3.4e-07  Score=71.31  Aligned_cols=87  Identities=23%  Similarity=0.284  Sum_probs=60.1

Q ss_pred             CCcccCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCc
Q 022278          197 PLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP  276 (300)
Q Consensus       197 ~~~~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~  276 (300)
                      ||++....++.++.|...+......++++.++||+.+|. |.|..-+.+|||+|.-.+  ++..|  .+||+++.+++..
T Consensus         1 ~W~~~~~~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~-H~H~g~ee~~VLeG~~~d--~~~~~--~~G~~~~~p~g~~   75 (91)
T PF12973_consen    1 PWQPGPRPGVSVKPLHRDEGETGERVSLLRLEPGASLPR-HRHPGGEEILVLEGELSD--GDGRY--GAGDWLRLPPGSS   75 (91)
T ss_dssp             --EE-CSTTEEEEEEEECSSSTTEEEEEEEE-TTEEEEE-EEESS-EEEEEEECEEEE--TTCEE--ETTEEEEE-TTEE
T ss_pred             CCccCCCCCEEEEEeccCCCcccCEEEEEEECCCCCcCc-cCCCCcEEEEEEEEEEEE--CCccC--CCCeEEEeCCCCc
Confidence            345532334556666655444567788999999999996 677777788999998875  44444  9999999999999


Q ss_pred             eeEEecCCccEEEE
Q 022278          277 QWYAALGKTRTRYL  290 (300)
Q Consensus       277 H~~~n~G~e~~~fi  290 (300)
                      |....  ++.+..+
T Consensus        76 h~~~s--~~gc~~~   87 (91)
T PF12973_consen   76 HTPRS--DEGCLIL   87 (91)
T ss_dssp             EEEEE--SSCEEEE
T ss_pred             cccCc--CCCEEEE
Confidence            99995  5555443

>PLN00212 glutelin; Provisional

Probab=98.62  E-value=1.7e-07  Score=93.76  Aligned_cols=90  Identities=16%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             EEEEeeCCCC---CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC--C-----------------------
Q 022278          207 QLRKLLPQAV---PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG--D-----------------------  258 (300)
Q Consensus       207 ~~~~l~p~~~---~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~--g-----------------------  258 (300)
                      .++.+.+.+.   .....+.+.+++|++-+.. |+|.-.+.+||++|+|++-+=  |                       
T Consensus        64 ~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP-~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~  142 (493)
T PLN00212         64 VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLP-RYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKF  142 (493)
T ss_pred             eeeecCCCChhhcccceEEEEEEecCCcccCc-cccCCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccccccccc
Confidence            3455555332   2356788999999999986 667888899999999988652  1                       


Q ss_pred             -----EEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecCC
Q 022278          259 -----SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  297 (300)
Q Consensus       259 -----~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr  297 (300)
                           +.+.+++||+|.+|+|+.||++|.|+++++.|+.-|+|-
T Consensus       143 ~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n  186 (493)
T PLN00212        143 RDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINN  186 (493)
T ss_pred             ccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccc
Confidence                 347999999999999999999999999999999988875

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=98.62  E-value=3.2e-07  Score=75.40  Aligned_cols=101  Identities=18%  Similarity=0.209  Sum_probs=76.9

Q ss_pred             eeeccCCCCCCcc--cCCceeEE-EEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe--CCEEEE
Q 022278          188 QIVGSTDKQPLLE--TPGEVFQL-RKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GDSWYP  262 (300)
Q Consensus       188 ~~~~~~~d~~~~~--~~g~~~~~-~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~--~g~~~~  262 (300)
                      |+|.+.+|+..++  +.+++... |.|+.+| +..|.|+..++.||..+..+-.|..| ..|+++|+|.+.+  +|+.++
T Consensus         1 MiVR~l~di~~Tdr~V~~~~w~SrRlll~~D-gmGFS~h~T~i~aGtet~~~YknHlE-Avyci~G~Gev~~~~~G~~~~   78 (126)
T PF06339_consen    1 MIVRSLDDIRGTDRDVDAENWESRRLLLKDD-GMGFSFHETTIYAGTETHIHYKNHLE-AVYCIEGEGEVEDLDTGEVHP   78 (126)
T ss_pred             CeEEEHHHhcCCceeEEcCCceEEEEEEccC-CCCEEEEEEEEeCCCeeEEEecCceE-EEEEEeceEEEEEccCCcEEE
Confidence            4677777776664  33334344 4455444 66777889999999997654444444 7899999999986  899999


Q ss_pred             ccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          263 VQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       263 v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      ++||.+-.......|.+.+..  +++.+|-
T Consensus        79 i~pGt~YaLd~hD~H~lra~~--dm~~vCV  106 (126)
T PF06339_consen   79 IKPGTMYALDKHDRHYLRAKT--DMRLVCV  106 (126)
T ss_pred             cCCCeEEecCCCccEEEEecC--CEEEEEE
Confidence            999999999999999999965  8887773

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.62  E-value=3.7e-07  Score=82.48  Aligned_cols=78  Identities=13%  Similarity=0.165  Sum_probs=63.9

Q ss_pred             EecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEE
Q 022278           95 LITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  174 (300)
Q Consensus        95 L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v  174 (300)
                      +.....+..|....+++.. .+.+ ...+.+|+.||++|++++++ +|+++.+++||.+|+|+|..|.|.+...+|++.+
T Consensus       148 ~~~~~d~s~m~aGf~~~~~-~sf~-wtl~~dEi~YVLEGe~~l~I-dG~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV  224 (233)
T PRK15457        148 LVTGDDGSSMAAGFMQWEN-AFFP-WTLNYDEIDMVLEGELHVRH-EGETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYV  224 (233)
T ss_pred             eeccCCCCceeeEEEEEec-Cccc-eeccceEEEEEEEeEEEEEE-CCEEEEeCCCcEEEECCCCeEEecCCCCeeEEEE
Confidence            4445566788888888874 2222 25788999999999999999 9999999999999999999988877668888776


Q ss_pred             E
Q 022278          175 E  175 (300)
Q Consensus       175 ~  175 (300)
                      .
T Consensus       225 ~  225 (233)
T PRK15457        225 A  225 (233)
T ss_pred             E
Confidence            4

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.60  E-value=4.1e-07  Score=70.53  Aligned_cols=71  Identities=14%  Similarity=0.162  Sum_probs=56.1

Q ss_pred             cEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEE
Q 022278          103 HFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF  174 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v  174 (300)
                      .|..-.++|+||+.-+.- ...-.-.+||++|.+++++ .+.++.+++|+++++|+|-.-.++|  +++|+++.+
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti-~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~   84 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI-HETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV   84 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE-TTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE-cCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence            677789999999876443 6777888999999999999 9999999999999999999999999  789998875

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=98.58  E-value=2e-07  Score=83.02  Aligned_cols=68  Identities=22%  Similarity=0.313  Sum_probs=56.0

Q ss_pred             EEEEecCCcccCcceeeccc---eEEEEEEeeEEEEeCC-----EEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          223 HIMDFQPGDFLNVKEVHYNQ---HGLLLLEGQGIYRLGD-----SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       223 ~~~tl~PG~~~p~~~~H~~e---h~~~iL~G~G~~~~~g-----~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      ....+.||+..-. |-|+..   |.+|+|+|+|.|.+..     .+..+++||+||+|++--|...|+|++||+|+.
T Consensus        83 ~e~~~t~G~~~~~-H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~  158 (209)
T COG2140          83 AEVFKTPGAMREL-HYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLN  158 (209)
T ss_pred             eEEEecCCccccc-ccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEE
Confidence            3566778876544 444322   5899999999999876     678999999999999999999999999999874

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=98.56  E-value=3.7e-07  Score=71.13  Aligned_cols=79  Identities=16%  Similarity=0.166  Sum_probs=59.7

Q ss_pred             ceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeE
Q 022278           90 TLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSA  169 (300)
Q Consensus        90 ~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a  169 (300)
                      .....|-...........++.++||+..+.|.|.+-|.+|||+|+..  . ++.  ...+||+++.|++..|....++.+
T Consensus        10 v~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~--d-~~~--~~~~G~~~~~p~g~~h~~~s~~gc   84 (91)
T PF12973_consen   10 VSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEEILVLEGELS--D-GDG--RYGAGDWLRLPPGSSHTPRSDEGC   84 (91)
T ss_dssp             EEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEE--E-TTC--EEETTEEEEE-TTEEEEEEESSCE
T ss_pred             EEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEE--E-CCc--cCCCCeEEEeCCCCccccCcCCCE
Confidence            44455554443446778899999999998888999999999999988  3 444  459999999999999999987777


Q ss_pred             EEEE
Q 022278          170 TLVV  173 (300)
Q Consensus       170 ~vl~  173 (300)
                      .+++
T Consensus        85 ~~~v   88 (91)
T PF12973_consen   85 LILV   88 (91)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=98.48  E-value=5.1e-07  Score=68.00  Aligned_cols=64  Identities=14%  Similarity=0.281  Sum_probs=50.5

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCC
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG  167 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~  167 (300)
                      ..+...+.+..||...- . .+.+|++|||+|+++++..+|+++++++||+++||+|..-.|.-.+
T Consensus         5 g~~~~g~w~~~pg~~~~-~-~~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v~~   68 (74)
T PF05899_consen    5 GVFSAGVWECTPGKFPW-P-YPEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEVRE   68 (74)
T ss_dssp             TSEEEEEEEEECEEEEE-E-ESSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEEEE
T ss_pred             CCEEEEEEEECCceeEe-e-CCCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEECe
Confidence            35677778888875332 2 2239999999999999987889999999999999999998887533

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK13501 transcriptional activator RhaR; Provisional

Probab=98.34  E-value=1.6e-06  Score=80.71  Aligned_cols=72  Identities=17%  Similarity=0.315  Sum_probs=58.2

Q ss_pred             eEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          220 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       220 ~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +.+.+-...+...++. |.|.+-+.+|+++|+|.+.+||+.+.+++||++||+||..|++...++.....+.|
T Consensus        18 ~~~~~~~~~~~~~~~~-H~H~~~ei~~i~~G~~~~~i~~~~~~l~~g~~~~I~p~~~H~~~~~~~~~~~~~~~   89 (290)
T PRK13501         18 MPVAVTNRYPQETFVE-HTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYESVHDLVLDNIIY   89 (290)
T ss_pred             CceEEecCCCCCCCcc-ccccceeEEEEecCceEEEECCeeeeecCCeEEEEcCCCcccccccCCeEEEEEEe
Confidence            3333444456666764 78888899999999999999999999999999999999999998876655555554

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=98.29  E-value=3.1e-06  Score=72.25  Aligned_cols=79  Identities=8%  Similarity=0.214  Sum_probs=60.9

Q ss_pred             EecCCCCCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278           95 LITPAMGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  173 (300)
Q Consensus        95 L~sp~~g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~  173 (300)
                      +++...+..|..-.++|++.   ... .-..+|..|||||++++.+ +|++++.++||.+|||.|..-.|+....||++.
T Consensus        68 v~~~~e~~~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~-~G~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Y  143 (152)
T PF06249_consen   68 VFSSDESPRLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI-DGQTVTAKPGDVIFIPKGSTITFSTPDYARFFY  143 (152)
T ss_dssp             EE-GGGT-SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE-TTEEEEEETT-EEEE-TT-EEEEEEEEEEEEEE
T ss_pred             eccCCCCCceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE-CCEEEEEcCCcEEEECCCCEEEEecCCCEEEEE
Confidence            55544566788888888863   223 5678999999999999999 999999999999999999999998777899998


Q ss_pred             EEee
Q 022278          174 FERR  177 (300)
Q Consensus       174 v~~~  177 (300)
                      |..|
T Consensus       144 v~yP  147 (152)
T PF06249_consen  144 VTYP  147 (152)
T ss_dssp             EEES
T ss_pred             EECC
Confidence            8543

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=98.24  E-value=0.00016  Score=67.50  Aligned_cols=162  Identities=9%  Similarity=0.114  Sum_probs=110.9

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCc-eEEee---CCeEEEEEEEeeccccCCCCcceeeccCCCC
Q 022278          121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLRA---EGSATLVVFERRYASLENHITEQIVGSTDKQ  196 (300)
Q Consensus       121 ~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~-H~~~N---~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~  196 (300)
                      ....|-.+..|.|++++++ +|+++.|.+.|++|+|.|.+ -.+..   ..+|++.+.+.+   +...-|..++. .+|+
T Consensus        71 l~rrE~giV~lgG~~~V~v-dG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAP---A~~~~PtrlI~-~~d~  145 (276)
T PRK00924         71 LERRELGIINIGGAGTVTV-DGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAP---AHTTYPTKKIT-IADA  145 (276)
T ss_pred             cCCcEEEEEEccceEEEEE-CCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccc---cCCCCCCEEEC-HHHC
Confidence            4566778899999999999 99999999999999999977 55543   457999988544   44444555555 4455


Q ss_pred             CCcccC-C---ceeEEEEee-CCCCC-cceEEEEEEecCCc---ccCcceeec-cceEE-EE--EEeeEEEEeCC---EE
Q 022278          197 PLLETP-G---EVFQLRKLL-PQAVP-FDFNIHIMDFQPGD---FLNVKEVHY-NQHGL-LL--LEGQGIYRLGD---SW  260 (300)
Q Consensus       197 ~~~~~~-g---~~~~~~~l~-p~~~~-~~~~~~~~tl~PG~---~~p~~~~H~-~eh~~-~i--L~G~G~~~~~g---~~  260 (300)
                      +..... |   ...+++.++ |+... -.+.|-...+.||+   +.|. |+|. ..|.| |.  =+++-+++++|   +.
T Consensus       146 ~~~~rG~~~~sN~R~I~~il~p~~~~s~qLlmG~tvltPGg~WSSyPP-HkHDrr~E~YlYf~l~~~qrV~h~mG~pdET  224 (276)
T PRK00924        146 SPVTLGDLETSNRRTINKYIHPDVLETCQLVMGLTELEPGSVWNTMPC-HTHDRRMEVYFYFDMPEDARVFHFMGEPQET  224 (276)
T ss_pred             CeEeccCCCCCCcEEEEEecCCCCCccccEEEEEEEEcCCCCCCCCCC-ccCCCCcceEEEEEcCCCceEEecCCCccce
Confidence            444432 1   233555665 65543 45777777789999   5675 6776 33443 32  25566777777   34


Q ss_pred             --EEccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278          261 --YPVQAGDVLWMAPFVPQWYAALGKTRTRYL  290 (300)
Q Consensus       261 --~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  290 (300)
                        .-|+-+|++..|+---|+=..  .....||
T Consensus       225 rh~~v~n~~aVisP~wsih~g~g--t~~y~fi  254 (276)
T PRK00924        225 RHIVVHNEQAVISPSWSIHSGVG--TSNYTFI  254 (276)
T ss_pred             eeEEEECCCEEECCCcceecCcC--ccccEEE
Confidence              778999999999998886433  3344444

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=98.23  E-value=8e-06  Score=68.71  Aligned_cols=78  Identities=14%  Similarity=0.241  Sum_probs=58.8

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cC-C-------cEEE--eccCcEEEeCCCCceEEeeC--Ce
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-AS-G-------VSSK--LMVDSYTYLPPNFAHSLRAE--GS  168 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~g-g-------~~~~--L~~Gds~yfpa~~~H~~~N~--~~  168 (300)
                      ..+...+++|.||+...+|-|...+++||++|++.+.+ .. +       ...+  +++||.+++|+|..|.+.|.  .+
T Consensus        32 ~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~  111 (144)
T PF00190_consen   32 NGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDE  111 (144)
T ss_dssp             TTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSS
T ss_pred             cceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCC
Confidence            46777788889999988886699999999999999765 22 2       2345  99999999999999999994  56


Q ss_pred             EEEEEEEeecc
Q 022278          169 ATLVVFERRYA  179 (300)
Q Consensus       169 a~vl~v~~~y~  179 (300)
                      +..+.+-.-..
T Consensus       112 ~~~~~~f~~~~  122 (144)
T PF00190_consen  112 ALVLIIFDTNN  122 (144)
T ss_dssp             EEEEEEEEESS
T ss_pred             CEEEEEEECCC
Confidence            55555534333

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.22  E-value=4.5e-06  Score=67.00  Aligned_cols=58  Identities=21%  Similarity=0.214  Sum_probs=45.4

Q ss_pred             CCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEe
Q 022278          118 ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFER  176 (300)
Q Consensus       118 ~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~  176 (300)
                      ..|.|+.=+++||++|+.++.+ +++++.+++||.++++|+..|++..  +++.+..|+.-
T Consensus        17 ~~h~h~~~~i~~v~~G~~~~~~-~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~   76 (136)
T PF02311_consen   17 PPHWHDFYEIIYVLSGEGTLHI-DGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF   76 (136)
T ss_dssp             EEETT-SEEEEEEEEE-EEEEE-TTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred             CCEECCCEEEEEEeCCEEEEEE-CCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence            4457899999999999999999 9999999999999999999999996  34788777743

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=98.21  E-value=8.4e-06  Score=69.66  Aligned_cols=86  Identities=12%  Similarity=0.145  Sum_probs=63.3

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      ..+.++.++..+.+..+..-.|++++. .++  -+=...|..|||+|+-.+.++|+.+..+|||++|+|.|..=.|...+
T Consensus        61 ~~~~~~dv~~~~e~~~l~~Gf~~le~~-~f~--wtl~YDEi~~VlEG~L~i~~~G~~~~A~~GDvi~iPkGs~I~fst~~  137 (152)
T PF06249_consen   61 DKVYIKDVFSSDESPRLSAGFMELEKT-SFP--WTLTYDEIKYVLEGTLEISIDGQTVTAKPGDVIFIPKGSTITFSTPD  137 (152)
T ss_dssp             --EEE-EEE-GGGT-SSEEEEEEEEEE-EEE--EE-SSEEEEEEEEEEEEEEETTEEEEEETT-EEEE-TT-EEEEEEEE
T ss_pred             ccEEEEEeccCCCCCceeeEEEEEeCC-Ccc--EEeecceEEEEEEeEEEEEECCEEEEEcCCcEEEECCCCEEEEecCC
Confidence            556777777655566677778888873 444  35566779999999999999999999999999999999998998877


Q ss_pred             CccEEEEEE
Q 022278          284 KTRTRYLLY  292 (300)
Q Consensus       284 ~e~~~fi~~  292 (300)
                      ...+-|..|
T Consensus       138 ~a~~~Yv~y  146 (152)
T PF06249_consen  138 YARFFYVTY  146 (152)
T ss_dssp             EEEEEEEEE
T ss_pred             CEEEEEEEC
Confidence            777777766

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=98.16  E-value=4.4e-06  Score=79.97  Aligned_cols=76  Identities=14%  Similarity=0.213  Sum_probs=65.8

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEE-EeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY-RLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  295 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~-~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~  295 (300)
                      .+...+-.|.||...+. |.|...-..||++|+|.| .+||+..+.++||++.+|++..|...|.|++++.+|-+-|.
T Consensus        80 tl~a~~q~l~pGe~~~~-HRht~sAl~~vveG~G~~t~V~g~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~lD~  156 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPS-HRHTQSALRFIVEGKGAFTAVDGERTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGLDI  156 (335)
T ss_pred             hHHhhhEEeCCCCCCCc-cccccceEEEEEEcCceEEEECCEEEeeeCCCEEEeCCCeeEecccCCCCcEEEEecCCH
Confidence            34445667889999986 788888899999999975 56999999999999999999999999999999888777663

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=98.16  E-value=2.8e-05  Score=69.46  Aligned_cols=83  Identities=14%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             ceEEEEecCCC-CCcEEEEEEEEcCCCcCCCC-CCCceE--EEEEEECEEEEEEc--CC--cEEEeccCcEEEeCCCCce
Q 022278           90 TLGAYLITPAM-GSHFVMYLANMQENARSALP-PHDVER--FIFVVQGSAMLTNA--SG--VSSKLMVDSYTYLPPNFAH  161 (300)
Q Consensus        90 ~~~~~L~sp~~-g~~f~~~lv~l~PG~~~~~~-~h~gEE--f~yVLeG~v~l~v~--gg--~~~~L~~Gds~yfpa~~~H  161 (300)
                      ...++-.++.. |+  .--++.+.||+..+.| +...+|  ..|||+|+..+.+.  .|  .+..+++||.+|+|++-.|
T Consensus        67 g~L~~~~t~~~pGs--~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH  144 (209)
T COG2140          67 GDLRLDVTRIFPGS--AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGH  144 (209)
T ss_pred             CeEEEEeeccCCCc--cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcce
Confidence            45555555443 44  3446778999998888 333455  99999999999882  12  4678899999999999999


Q ss_pred             EEee--CCeEEEEEE
Q 022278          162 SLRA--EGSATLVVF  174 (300)
Q Consensus       162 ~~~N--~~~a~vl~v  174 (300)
                      +..|  +++..++.+
T Consensus       145 ~t~N~Gd~pLvf~~v  159 (209)
T COG2140         145 YTINTGDEPLVFLNV  159 (209)
T ss_pred             EeecCCCCCEEEEEE
Confidence            9999  677766665

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=98.11  E-value=1.6e-05  Score=71.76  Aligned_cols=91  Identities=13%  Similarity=0.034  Sum_probs=66.2

Q ss_pred             CCCcccCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCC
Q 022278          196 QPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFV  275 (300)
Q Consensus       196 ~~~~~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~  275 (300)
                      ++|+...+ ++....|...+..  ..++.+.++||+.+|. |+|.-.|..+||+|.  +.+++.  ...+||+++.+++.
T Consensus       106 ~~W~~~~~-gv~~~~L~~~~~~--~~v~Ll~i~pG~~~p~-H~H~G~E~tlVLeG~--f~de~g--~y~~Gd~i~~p~~~  177 (215)
T TIGR02451       106 WRWRGPGG-RVSRVTLPIDDGN--ARVRLLYIEAGQSIPQ-HTHKGFELTLVLHGA--FSDETG--VYGVGDFEEADGSV  177 (215)
T ss_pred             CCccCCCC-CeEEEeccCCCCC--cEEEEEEECCCCccCC-CcCCCcEEEEEEEEE--EEcCCC--ccCCCeEEECCCCC
Confidence            56776543 3232223322312  3578999999999997 566666688999999  444444  56999999999999


Q ss_pred             ceeEEecCCccEEEEEEee
Q 022278          276 PQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       276 ~H~~~n~G~e~~~fi~~kd  294 (300)
                      .|+..+.+++++..+.--|
T Consensus       178 ~H~p~a~~~~~Cicl~v~d  196 (215)
T TIGR02451       178 QHQPRTVSGGDCLCLAVLD  196 (215)
T ss_pred             CcCcccCCCCCeEEEEEec
Confidence            9999999999888776544

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PRK13500 transcriptional activator RhaR; Provisional

Probab=98.05  E-value=1.6e-05  Score=75.02  Aligned_cols=65  Identities=20%  Similarity=0.343  Sum_probs=54.1

Q ss_pred             cCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEe
Q 022278          228 QPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  293 (300)
Q Consensus       228 ~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  293 (300)
                      -|....+. |.|..-+.+||++|.|.+.+||+.+.+++||+++++|+..|.+....+.....++|.
T Consensus        56 ~~~~~~~~-H~H~~~el~~v~~G~g~~~v~~~~~~l~~Gdl~~I~~~~~H~~~~~~~~~~~~i~~~  120 (312)
T PRK13500         56 YPQDVFAE-HTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYC  120 (312)
T ss_pred             CCCCCCCc-cccceEEEEEEEcCeEEEEECCEEEeecCCeEEEECCCCeecccccCCceEEEEEEc
Confidence            35555554 678777899999999999999999999999999999999999998776555555553

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.05  E-value=8.5e-05  Score=57.59  Aligned_cols=73  Identities=12%  Similarity=0.178  Sum_probs=59.0

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      .++.-++.|.||+.=+...+..+.-.+||++|...+++++....+.+||..++|+|-.=+++|.|+++.+-+.
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF   83 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF   83 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence            6777899999999988877778888899999999999999999999999999999999999999999887654

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.01  E-value=6.2e-05  Score=63.87  Aligned_cols=86  Identities=15%  Similarity=0.191  Sum_probs=69.9

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      ..+....|+..+.+.-+..-.+..+| ..+|.  +-..-++-|||||+..++++|+....+|||+||||-|-.=-|.-+|
T Consensus        84 ~~V~~tdLvt~~~g~~l~aG~m~~~~-~tf~w--tl~yDe~d~VlEGrL~V~~~g~tv~a~aGDvifiPKgssIefst~g  160 (176)
T COG4766          84 DCVYTTDLVTEQEGSRLGAGLMEMKN-TTFPW--TLNYDEIDYVLEGRLHVRIDGRTVIAGAGDVIFIPKGSSIEFSTTG  160 (176)
T ss_pred             CeEEeeceeecccCCccccceeeecc-ccCcc--eecccceeEEEeeeEEEEEcCCeEecCCCcEEEecCCCeEEEeccc
Confidence            44566667776667667777788888 77663  5555569999999999999999999999999999999999999998


Q ss_pred             CccEEEEEE
Q 022278          284 KTRTRYLLY  292 (300)
Q Consensus       284 ~e~~~fi~~  292 (300)
                      .-.+-|+.|
T Consensus       161 ea~flyvty  169 (176)
T COG4766         161 EAKFLYVTY  169 (176)
T ss_pred             eEEEEEEEc
Confidence            866666665

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=98.00  E-value=3.2e-05  Score=71.34  Aligned_cols=61  Identities=11%  Similarity=0.081  Sum_probs=48.2

Q ss_pred             EEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEec
Q 022278          222 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       222 ~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                      ++++...........|.|..-+.+||++|.+.+.+||+.+.+++||++|++||+.|.....
T Consensus        24 ~~~~~~~~~~~~~~~H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~l~~i~p~~~H~~~~~   84 (278)
T PRK10296         24 FHVFIYNKTESVSGLHQHDYYEFTLVLTGRYYQEINGKRVLLERGDFVFIPLGSHHQSFYE   84 (278)
T ss_pred             EEEEEEehhhcCCCCcccccEEEEEEEeceEEEEECCEEEEECCCcEEEeCCCCccceeee
Confidence            3444443333332347888888999999999999999999999999999999999977544

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=97.99  E-value=4.1e-05  Score=68.58  Aligned_cols=78  Identities=13%  Similarity=0.114  Sum_probs=65.7

Q ss_pred             cceEEEEEEecCCcccCcceee-ccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  295 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H-~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~  295 (300)
                      ..|.=-++++.|+|-.-..+.. ..|-.+||++|+..+.++|+.+.+++|++.|+|||..|.+.|..+++.+|-.||-.
T Consensus        59 ~tF~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk~  137 (264)
T COG3257          59 ATFVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRKR  137 (264)
T ss_pred             hhhhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEEeec
Confidence            3455568899898854444443 45566899999999999999999999999999999999999999999999998753

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=97.96  E-value=4.7e-05  Score=65.58  Aligned_cols=55  Identities=13%  Similarity=0.328  Sum_probs=42.5

Q ss_pred             ceeeccceEEEEEEeeEEEEe---CCEEE--EccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278          236 KEVHYNQHGLLLLEGQGIYRL---GDSWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYL  290 (300)
Q Consensus       236 ~~~H~~eh~~~iL~G~G~~~~---~g~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  290 (300)
                      -|+|..+|.-||++|+|.+.+   +++|.  .+++||.|.+|+|..|||.-.-+..++-|
T Consensus        87 EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~ai  146 (157)
T PF03079_consen   87 EHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAI  146 (157)
T ss_dssp             -EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEE
T ss_pred             eEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEE
Confidence            589999999999999999987   78887  89999999999999999996544444433

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK13503 transcriptional activator RhaS; Provisional

Probab=97.95  E-value=1.1e-05  Score=74.11  Aligned_cols=63  Identities=17%  Similarity=0.249  Sum_probs=51.9

Q ss_pred             CCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          229 PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       229 PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      |....+. |+|..-+.+||++|.|.+.+||+.+++++||++|++|+.+|.+.+..+..+.+++|
T Consensus        24 ~~~~~~~-H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~~~~~~~~~   86 (278)
T PRK13503         24 PQAAFPE-HHHDFHEIVIVEHGTGIHVFNGQPYTLSGGTVCFVRDHDRHLYEHTDNLCLTNVLY   86 (278)
T ss_pred             ccccccc-cccCceeEEEEecCceeeEecCCcccccCCcEEEECCCccchhhhccCceEEEEee
Confidence            4445554 68888899999999999999999999999999999999999988775444444444

>PRK13502 transcriptional activator RhaR; Provisional

Probab=97.94  E-value=3.3e-05  Score=71.26  Aligned_cols=65  Identities=17%  Similarity=0.311  Sum_probs=52.5

Q ss_pred             EecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          226 DFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       226 tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      ...|....+. |.|..-+.+|+++|+|.+.+||+.+.+++||+++++|+.+|.+...++....+++
T Consensus        24 ~~~~~~~~~~-H~h~~~~l~~v~~G~~~~~i~~~~~~l~~g~l~li~~~~~H~~~~~~~~~~~~~~   88 (282)
T PRK13502         24 DRYPQDVFAE-HTHEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVNDLVLQNII   88 (282)
T ss_pred             cCCCCCCCCc-cccceEEEEEEecCcEEEEECCEEEeecCCcEEEECCCCcccccccCCceEEEEE
Confidence            3345554554 6777778999999999999999999999999999999999999876654434443

>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]

Probab=97.89  E-value=0.0018  Score=58.77  Aligned_cols=170  Identities=18%  Similarity=0.263  Sum_probs=113.5

Q ss_pred             EEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEE-Ee---------ccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278          104 FVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSS-KL---------MVDSYTYLPPNFAHSLRAEGSATLVV  173 (300)
Q Consensus       104 f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~-~L---------~~Gds~yfpa~~~H~~~N~~~a~vl~  173 (300)
                      ...-+.+|.+|.+......+.|..+.+++|++++.. +|+.+ .+         ++-|++|+|++...++....++++-+
T Consensus        29 VGF~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~-~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~vAv  107 (270)
T COG3718          29 VGFRLLRLAAGESATEETGDRERCLVLVTGKATVSA-HGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDLEVAV  107 (270)
T ss_pred             EEEEEEEccCCCcccccCCCceEEEEEEeeeEEEee-ccchHhhcccccccccCCCCCeEEecCCceEEEEeecceEEEE
Confidence            344588899998877777888999999999999997 66543 33         36699999999999999877777666


Q ss_pred             EEeeccccCCCCcceeeccCCCCCCcc-cCC-ceeEEEEeeCCCC-Cc--ceEEEEEEecCCccc--Ccceeec------
Q 022278          174 FERRYASLENHITEQIVGSTDKQPLLE-TPG-EVFQLRKLLPQAV-PF--DFNIHIMDFQPGDFL--NVKEVHY------  240 (300)
Q Consensus       174 v~~~y~~~~g~~p~~~~~~~~d~~~~~-~~g-~~~~~~~l~p~~~-~~--~~~~~~~tl~PG~~~--p~~~~H~------  240 (300)
                      -   +.|..|..|..+++..+. +... -.| ....+..++|++. ..  ...+-++|  ||+..  -..|.|.      
T Consensus       108 C---~AP~~g~~~~~~i~p~~~-~~e~RGkG~NtR~VhNIlp~~~~~AdsLLVvEV~T--p~Gn~SSYPPHKHD~d~~p~  181 (270)
T COG3718         108 C---SAPGKGGLPTKLIKPEDN-GVEHRGKGRNTRYVHNILPEDAPVADSLLVVEVIT--PGGNWSSYPPHKHDEDNLPH  181 (270)
T ss_pred             E---eCCCCCCcceEEeccccC-CceeeccccceeeEEccCCCCCccccceEEEEEEc--CCCCcCCCCCCcccccCCcc
Confidence            5   566677678888875433 3222 233 3323444667654 33  35555555  77752  1134553      


Q ss_pred             ---cceEEEEE----Ee---eEEEEeCC---EEEEccCCcEEEeCCC-----CceeEE
Q 022278          241 ---NQHGLLLL----EG---QGIYRLGD---SWYPVQAGDVLWMAPF-----VPQWYA  280 (300)
Q Consensus       241 ---~eh~~~iL----~G---~G~~~~~g---~~~~v~~GD~i~~~~~-----~~H~~~  280 (300)
                         -||+||--    +|   +=+|++|+   +..-|.-||++.+|-|     .+|+|.
T Consensus       182 Es~LEEtYYHrlnP~QGF~fQRVYTddrsLDEtmaV~~~dvvlVP~GYHPv~ap~GYd  239 (270)
T COG3718         182 ESYLEETYYHRLNPPQGFAFQRVYTDDRSLDETMAVENGDVVLVPKGYHPVGAPHGYD  239 (270)
T ss_pred             chhhhhhhhhccCccccceEEEEEcCCCcccceeeeecCCEEEecCCcCccccCCccc
Confidence               34566653    23   33677774   6788999999999765     556543

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=97.89  E-value=3.4e-05  Score=69.67  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=56.0

Q ss_pred             EEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC--CeEEEEEE
Q 022278          104 FVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE--GSATLVVF  174 (300)
Q Consensus       104 f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~--~~a~vl~v  174 (300)
                      ....++.++||+..+.|.|.|.|+.+||+|+..  - +  .-.+.+||++..|++..|+..+.  +++..+.+
T Consensus       127 ~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~--d-e--~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v  194 (215)
T TIGR02451       127 ARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS--D-E--TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAV  194 (215)
T ss_pred             cEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE--c-C--CCccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence            456899999999999999999999999999954  2 3  33689999999999999999983  55887777

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=97.88  E-value=8.4e-05  Score=63.01  Aligned_cols=67  Identities=22%  Similarity=0.339  Sum_probs=44.9

Q ss_pred             EcCCCcCCCCCCCceEEEEEEECEEEEEE-cCC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEee
Q 022278          111 MQENARSALPPHDVERFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  177 (300)
Q Consensus       111 l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~  177 (300)
                      =.|+.++..|-.++|||+|-++|.+.|.+ ++|  +...+++||.++.|++++|+-.--+.+.-|++++.
T Consensus        40 GGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~tiGLViEr~  109 (151)
T PF06052_consen   40 GGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPADTIGLVIERK  109 (151)
T ss_dssp             ESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT-EEEEEEE-
T ss_pred             cCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCCcEEEEEEec
Confidence            46777777778899999999999999987 334  45799999999999999999775556677777766

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=97.86  E-value=0.00015  Score=63.79  Aligned_cols=73  Identities=16%  Similarity=0.243  Sum_probs=47.3

Q ss_pred             eEEEEEEecCCccc--------Cccee----eccceEEEEEEeeEEEEeC---C------EEEEccCCcEEEeCCCCcee
Q 022278          220 FNIHIMDFQPGDFL--------NVKEV----HYNQHGLLLLEGQGIYRLG---D------SWYPVQAGDVLWMAPFVPQW  278 (300)
Q Consensus       220 ~~~~~~tl~PG~~~--------p~~~~----H~~eh~~~iL~G~G~~~~~---g------~~~~v~~GD~i~~~~~~~H~  278 (300)
                      ..+-+..+.||---        ++|..    -...|.|++|+|+|.+.+.   +      ...++++||+++|||+--|-
T Consensus        50 L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~  129 (182)
T PF06560_consen   50 LRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHR  129 (182)
T ss_dssp             EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEE
T ss_pred             EEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEE
Confidence            56667777776421        11111    1245899999999999874   3      24789999999999999999


Q ss_pred             EEecCCccEEEEEE
Q 022278          279 YAALGKTRTRYLLY  292 (300)
Q Consensus       279 ~~n~G~e~~~fi~~  292 (300)
                      ..|+|+++|+|...
T Consensus       130 tIN~g~~~L~~~~~  143 (182)
T PF06560_consen  130 TINTGDEPLVFAAW  143 (182)
T ss_dssp             EEE-SSS-EEEEEE
T ss_pred             EEECCCCcEEEEEE
Confidence            99999999999764

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.80  E-value=0.00016  Score=61.35  Aligned_cols=79  Identities=15%  Similarity=0.214  Sum_probs=64.4

Q ss_pred             EecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEE
Q 022278           95 LITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  174 (300)
Q Consensus        95 L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v  174 (300)
                      |+.-..|..+..-++++.+ ...+ -.-..+|.-|||||++.+.+ +|++...++||.+|+|-|..-.+.-...|+++.|
T Consensus        91 Lvt~~~g~~l~aG~m~~~~-~tf~-wtl~yDe~d~VlEGrL~V~~-~g~tv~a~aGDvifiPKgssIefst~gea~flyv  167 (176)
T COG4766          91 LVTEQEGSRLGAGLMEMKN-TTFP-WTLNYDEIDYVLEGRLHVRI-DGRTVIAGAGDVIFIPKGSSIEFSTTGEAKFLYV  167 (176)
T ss_pred             eeecccCCccccceeeecc-ccCc-ceecccceeEEEeeeEEEEE-cCCeEecCCCcEEEecCCCeEEEeccceEEEEEE
Confidence            5555666777777788877 2222 25678999999999999999 9999999999999999999998887666999998


Q ss_pred             Ee
Q 022278          175 ER  176 (300)
Q Consensus       175 ~~  176 (300)
                      ..
T Consensus       168 ty  169 (176)
T COG4766         168 TY  169 (176)
T ss_pred             Ec
Confidence            43

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=97.80  E-value=7.4e-05  Score=70.42  Aligned_cols=66  Identities=14%  Similarity=0.141  Sum_probs=54.0

Q ss_pred             eEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCcc
Q 022278          220 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR  286 (300)
Q Consensus       220 ~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  286 (300)
                      +.+.+..-.|-...+ .|-|..-|.+|+++|.+.+.+||+.+.+++||++|++++++|.+...++..
T Consensus        26 ~~~~~~~~~~~~m~~-~HwH~e~Ei~yv~~G~~~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~   91 (302)
T PRK10371         26 QRLEIEFRPPHIMPT-SHWHGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACTPHQLTDPGNCR   91 (302)
T ss_pred             ceeEEEeeCCCCCCC-CCccccEEEEEecCCcEEEEECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence            445555555555544 478888889999999999999999999999999999999999988766543

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=97.79  E-value=0.00011  Score=63.27  Aligned_cols=63  Identities=14%  Similarity=0.214  Sum_probs=50.2

Q ss_pred             EEEEEEe-cCCcccCcceeeccceEEEEEEeeEEEE--eCCE--EEEccCCcEEEeCCCCceeEEecCC
Q 022278          221 NIHIMDF-QPGDFLNVKEVHYNQHGLLLLEGQGIYR--LGDS--WYPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       221 ~~~~~tl-~PG~~~p~~~~H~~eh~~~iL~G~G~~~--~~g~--~~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      .+.++.+ -||....+ |.|..+|-+|+|+|...+.  ++|+  ...+++||++++|+|++|...+.++
T Consensus        28 ~~~v~~vgGpn~R~d~-H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~   95 (159)
T TIGR03037        28 EFMVTVVGGPNARTDF-HDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAG   95 (159)
T ss_pred             cEEEEEeCCCCCCccc-ccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence            4455556 67777877 4577788999999999995  4553  8999999999999999998877543

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.00064  Score=64.53  Aligned_cols=129  Identities=16%  Similarity=0.193  Sum_probs=75.6

Q ss_pred             cEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEe----eccccCCCCccee-ec------cCCCCCCcccC----CceeE
Q 022278          143 VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER----RYASLENHITEQI-VG------STDKQPLLETP----GEVFQ  207 (300)
Q Consensus       143 ~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~----~y~~~~g~~p~~~-~~------~~~d~~~~~~~----g~~~~  207 (300)
                      +...|+|||++|+||+++|.+...   .++=+++    .|+...-  |+.. ++      ..+.++....+    ..+..
T Consensus       158 n~v~lkpGe~~fl~Agt~HA~~~G---~~lEvmqnSDntyR~yd~--~r~~d~~~lr~l~~~k~~~~~~~~~~~~~~~~~  232 (312)
T COG1482         158 NRVKLKPGEAFFLPAGTPHAYLKG---LVLEVMQNSDNTYRVYDT--DRYDDIGELRELHLFKAKDVITLPTQPRKQGAE  232 (312)
T ss_pred             cEEecCCCCEEEecCCCceeeccc---eEEEEEecCccEEEcccc--cccccchhHHhhhhccccchhhcCCcccccCce
Confidence            568999999999999999998742   1111111    1111111  1110 01      11112222221    12223


Q ss_pred             EEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCce-eEEec
Q 022278          208 LRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ-WYAAL  282 (300)
Q Consensus       208 ~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H-~~~n~  282 (300)
                      ...++|.+   +|.+.++.+..=....   .+....++++++|+|+++-+|+.+++++|+.+|++++..- -+...
T Consensus       233 ~~~~v~~~---~F~l~~~~i~~~~~~~---~~~~~~il~v~eG~~~l~~~~~~~~l~~G~s~~ipa~~~~~~i~g~  302 (312)
T COG1482         233 LTYPVPNE---DFALYKWDISGTAEFI---KQESFSILLVLEGEGTLIGGGQTLKLKKGESFFIPANDGPYTIEGE  302 (312)
T ss_pred             EEEecccc---ceEEEEEeccChhhhc---cCCCcEEEEEEcCeEEEecCCEEEEEcCCcEEEEEcCCCcEEEEec
Confidence            33344433   5666677766522221   2236679999999999999999999999999999999443 44443

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.00061  Score=65.31  Aligned_cols=137  Identities=18%  Similarity=0.172  Sum_probs=85.3

Q ss_pred             EEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCccee-----ec--cCC--CCCCcccCC---ceeEEEEe
Q 022278          144 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQI-----VG--STD--KQPLLETPG---EVFQLRKL  211 (300)
Q Consensus       144 ~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p~~~-----~~--~~~--d~~~~~~~g---~~~~~~~l  211 (300)
                      -.+|.+|+.+|+.|+.+|.+-..+-+.-.--+. =.-.+|..|+.+     +.  +.+  +..+..+++   .. .....
T Consensus       249 ~~~L~PGEA~yL~AnepHAYlsGdcvECMA~SD-NvIRAGlTPK~~Dv~tL~smL~Y~~~~~~p~~~~~~~~~~-~~~~Y  326 (411)
T KOG2757|consen  249 YVRLNPGEAIYLEANEPHAYLSGDCVECMACSD-NVIRAGLTPKYIDVDTLCSMLTYKLTEQQPKLFPRSRLDG-YVLLY  326 (411)
T ss_pred             heecCCCceeeecCCCcceeecCceeEEecccC-ceeeccCCCccccHHHHHhHhcccccccccccCCccCCCC-ceeEe
Confidence            368999999999999999988522211110000 000234334322     11  011  111111222   11 12233


Q ss_pred             eCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278          212 LPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       212 ~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      +|.  -.+|.+...++.+|.+.-+ ..-.-.-++.|++|+|++..+ +..+.|++||++||++..+=.+..+.+-
T Consensus       327 ~Pp--i~eF~v~~~~v~~g~~~~~-~~~~~~SIllv~~G~g~l~~~t~~~~~v~rG~V~fI~a~~~i~~~~~sd~  398 (411)
T KOG2757|consen  327 DPP--IEEFAVLETKVPTGESYKF-PGVDGPSILLVLKGSGILKTDTDSKILVNRGDVLFIPANHPIHLSSSSDP  398 (411)
T ss_pred             CCC--CcceeEEEeecCCCceEEe-ecCCCceEEEEEecceEEecCCCCceeeccCcEEEEcCCCCceeeccCcc
Confidence            444  3468888888888776433 333444689999999999999 9999999999999999998888777554

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=97.72  E-value=8.9e-05  Score=68.41  Aligned_cols=62  Identities=21%  Similarity=0.149  Sum_probs=51.6

Q ss_pred             CCcccCcceeec-cceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          229 PGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       229 PG~~~p~~~~H~-~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      -|..++. |.|. +-+.+|+++|++.+.+||+.+.+++||++|++|+++|.+...++.+...|+
T Consensus        32 ~~~~~~~-H~H~~~~~l~~~~~G~~~~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~   94 (287)
T TIGR02297        32 FGRNMPV-HFHDRYYQLHYLTEGSIALQLDEHEYSEYAPCFFLTPPSVPHGFVTDLDADGHVLT   94 (287)
T ss_pred             cCCCCCC-cccccceeEEEEeeCceEEEECCEEEEecCCeEEEeCCCCccccccCCCcceEEEE
Confidence            3455665 6776 678999999999999999999999999999999999999877665544444

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=97.69  E-value=0.00017  Score=62.99  Aligned_cols=54  Identities=17%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             cCCcccCcceeeccceEEEEEEeeEEEEe--CC--EEEEccCCcEEEeCCCCceeEEec
Q 022278          228 QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GD--SWYPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       228 ~PG~~~p~~~~H~~eh~~~iL~G~G~~~~--~g--~~~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                      -||....+| .|..+|-+|+|+|...+.+  +|  +...+++||++++|+|++|..++.
T Consensus        42 Gpn~r~d~H-~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~   99 (177)
T PRK13264         42 GPNARTDFH-YDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQRE   99 (177)
T ss_pred             cCCcccccc-cCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccC
Confidence            588888884 5888899999999999988  77  699999999999999999988763

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=97.66  E-value=0.00024  Score=58.17  Aligned_cols=66  Identities=11%  Similarity=0.153  Sum_probs=51.2

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEE
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSAT  170 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~  170 (300)
                      ..+.-+-+=-||.-.-  .-+..||+++|+|+++++-++|+...+++||+++||+|..=.|+=.+++|
T Consensus        44 ~~~~GiWe~TpG~~r~--~y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g~W~V~Etvr  109 (116)
T COG3450          44 QVETGIWECTPGKFRV--TYDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKGTWEVLETVR  109 (116)
T ss_pred             CeeEeEEEecCccceE--EcccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeEEEEEeeeeE
Confidence            4555566666763221  23559999999999999987789999999999999999999998644443

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.62  E-value=9e-05  Score=69.35  Aligned_cols=66  Identities=20%  Similarity=0.327  Sum_probs=60.3

Q ss_pred             EEEecCCcccCcceeeccceEEEEEEeeEEEE-eCCEEEEccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278          224 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR-LGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL  290 (300)
Q Consensus       224 ~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~-~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  290 (300)
                      +--+.||..-|- |.|.+.-..||.+|+|.|+ +||+..+.++||||.+|.+--|.--|.|+||+.++
T Consensus        96 lQlilPGEvAps-HrHsqsAlRFvveG~Ga~T~VdGer~~M~~GDfilTP~w~wHdHgn~g~eP~iWl  162 (351)
T COG3435          96 LQLILPGEVAPS-HRHNQSALRFVVEGKGAYTVVDGERTPMEAGDFILTPAWTWHDHGNEGTEPCIWL  162 (351)
T ss_pred             hheecCcccCCc-ccccccceEEEEeccceeEeecCceeeccCCCEEEccCceeccCCCCCCCceEEE
Confidence            344679999986 8999999999999999887 89999999999999999999999999999999876

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=97.59  E-value=0.0013  Score=54.35  Aligned_cols=76  Identities=14%  Similarity=0.204  Sum_probs=64.5

Q ss_pred             CCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEE
Q 022278           99 AMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  174 (300)
Q Consensus        99 ~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v  174 (300)
                      ..|-.|..-.-++.||..+..+-..-=|-+|+++|+.+++. .+|+++.+++|...-+....+|.++..++.++++|
T Consensus        30 ~DgmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~dm~~vCV  106 (126)
T PF06339_consen   30 DDGMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKTDMRLVCV  106 (126)
T ss_pred             cCCCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecCCEEEEEE
Confidence            45557888899999998876664444788999999999986 47999999999998899999999999778888888

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=97.59  E-value=0.0032  Score=61.77  Aligned_cols=133  Identities=14%  Similarity=0.158  Sum_probs=75.2

Q ss_pred             cEEEeccCcEEEeCCCCceEEeeCCeEEEEEE-EeeccccCCCCcceee-----c--cCCCCCCcc--c---CCceeEEE
Q 022278          143 VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF-ERRYASLENHITEQIV-----G--STDKQPLLE--T---PGEVFQLR  209 (300)
Q Consensus       143 ~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v-~~~y~~~~g~~p~~~~-----~--~~~d~~~~~--~---~g~~~~~~  209 (300)
                      ....|++||++|+|||.+|.+-...-+.+.-- .-.|+  .|..|+.+-     .  +.+..+...  .   ..+. ...
T Consensus       237 N~v~l~pGeaifipAg~~HAyl~G~~iEima~SDnv~R--aGlT~K~idv~~ll~~l~f~~~~~~~~~~~~~~~~~-~~~  313 (389)
T PRK15131        237 NVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLR--AGLTPKYIDIPELVANVKFEAKPANQLLTQPVKQGA-ELD  313 (389)
T ss_pred             eEEEeCCCCEEEeCCCCCeEEcCCeEEEEEecCCcEEe--cCCCCCcccHHHHHhhcCCCCCCchhccccccccCC-eEE
Confidence            35789999999999999999875222222210 01111  332222110     0  111111110  0   0011 111


Q ss_pred             EeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278          210 KLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       210 ~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      ...|.   .+|.+.+.+++++... .  ...-..++++++|++.+..+|+...+++|+.+|++++...... .|+.
T Consensus       314 ~~~p~---~~F~~~~~~l~~~~~~-~--~~~~~~Illv~~G~~~i~~~~~~~~l~~G~~~fipa~~~~~~~-~g~~  382 (389)
T PRK15131        314 FPIPV---DDFAFSLHDLSDQPTT-L--SQQSAAILFCVEGEAVLWKGEQQLTLKPGESAFIAANESPVTV-SGHG  382 (389)
T ss_pred             ECCCC---CCcEEEEEEECCceEE-e--cCCCcEEEEEEcceEEEEeCCeEEEECCCCEEEEeCCCccEEE-eccc
Confidence            12232   2577777777664211 1  1123378999999999999999999999999999998765433 3543

>PRK13501 transcriptional activator RhaR; Provisional

Probab=97.58  E-value=0.00028  Score=65.64  Aligned_cols=53  Identities=11%  Similarity=0.152  Sum_probs=47.3

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC
Q 022278          113 ENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE  166 (300)
Q Consensus       113 PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~  166 (300)
                      +......|.|+.=|++||++|++++.+ +|+.+.+++||.+++|++..|.++..
T Consensus        27 ~~~~~~~H~H~~~ei~~i~~G~~~~~i-~~~~~~l~~g~~~~I~p~~~H~~~~~   79 (290)
T PRK13501         27 PQETFVEHTHQFCEIVIVWRGNGLHVL-NDHPYRITCGDVFYIQAADHHSYESV   79 (290)
T ss_pred             CCCCCccccccceeEEEEecCceEEEE-CCeeeeecCCeEEEEcCCCccccccc
Confidence            433445678999999999999999999 99999999999999999999999863

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=97.57  E-value=0.00055  Score=63.07  Aligned_cols=56  Identities=21%  Similarity=0.296  Sum_probs=47.4

Q ss_pred             cCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEE
Q 022278          116 RSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLV  172 (300)
Q Consensus       116 ~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl  172 (300)
                      ..+.|.|+.-|++||++|++++.+ +|+++.+++||.+++||+..|.... .++.+.+
T Consensus        35 ~~~~H~H~~~ei~~v~~G~~~~~i-~~~~~~l~~g~l~~i~p~~~H~~~~~~~~~~~~   91 (278)
T PRK10296         35 VSGLHQHDYYEFTLVLTGRYYQEI-NGKRVLLERGDFVFIPLGSHHQSFYEFGATRIL   91 (278)
T ss_pred             CCCCcccccEEEEEEEeceEEEEE-CCEEEEECCCcEEEeCCCCccceeeeCCCcEEE
Confidence            345678999999999999999999 9999999999999999999997653 3334544

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=97.56  E-value=0.00049  Score=65.06  Aligned_cols=131  Identities=17%  Similarity=0.232  Sum_probs=76.5

Q ss_pred             EECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee----------CCeEEEEEEEeeccccCCCCcceeec--cCCCCCC
Q 022278          131 VQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA----------EGSATLVVFERRYASLENHITEQIVG--STDKQPL  198 (300)
Q Consensus       131 LeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N----------~~~a~vl~v~~~y~~~~g~~p~~~~~--~~~d~~~  198 (300)
                      -+|.+...+   ....+++||++|+|||+.|.+.+          |-.-|+-... |  +++   .+....  +....+.
T Consensus       142 ~~g~~~~~l---n~v~v~~Gd~i~ipaGt~HA~~g~~~~Eiq~~SD~t~R~~d~~-r--~l~---ve~~l~~~~~~~~~~  212 (302)
T TIGR00218       142 EDGLFKLLL---NRIKLKPGDFFYVPSGTPHAYKGGLVLEVMQNSDNVYRAGDTD-K--YLD---IEKLVEVLTFPHVPE  212 (302)
T ss_pred             hcCcHHHHh---cccccCCCCEEEeCCCCcccccCceEEEEEcCCCcEEEeeccC-c--ccC---HHHHHhhccCCCCCc
Confidence            445444333   46799999999999999998763          1122222221 1  111   011111  1111111


Q ss_pred             c-----ccCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCC
Q 022278          199 L-----ETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAP  273 (300)
Q Consensus       199 ~-----~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~  273 (300)
                      .     +...+. ....+.|   ..+|.++++++......   ..+....++++++|++.+..+|...++++|+.+++|+
T Consensus       213 ~~~~~~~~~~~~-~~~~~~~---~~~F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~ipa  285 (302)
T TIGR00218       213 FHLKGQPQKFGA-EILFMVP---TEYFSVYKWDISGKAEF---IQQQSALILSVLEGSGRIKSGGKTLPLKKGESFFIPA  285 (302)
T ss_pred             cccccccccCCc-EEEEcCC---CCCeEEEEEEeCCceee---ccCCCcEEEEEEcceEEEEECCEEEEEecccEEEEcc
Confidence            1     111111 1112223   34677888888654322   2234457899999999999999999999999999999


Q ss_pred             CCce
Q 022278          274 FVPQ  277 (300)
Q Consensus       274 ~~~H  277 (300)
                      ++..
T Consensus       286 ~~~~  289 (302)
T TIGR00218       286 HLGP  289 (302)
T ss_pred             CCcc
Confidence            9854

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.45  E-value=0.00066  Score=50.99  Aligned_cols=58  Identities=17%  Similarity=0.232  Sum_probs=44.0

Q ss_pred             eEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe-CCEEEEccCCcEEEeCCCCceeEE
Q 022278          220 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYA  280 (300)
Q Consensus       220 ~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~-~g~~~~v~~GD~i~~~~~~~H~~~  280 (300)
                      +..-+..-+||.. +.  .....|..|||+|+..++. +|+.+.++|||++++|+|......
T Consensus         7 ~~~g~w~~~pg~~-~~--~~~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~   65 (74)
T PF05899_consen    7 FSAGVWECTPGKF-PW--PYPEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWE   65 (74)
T ss_dssp             EEEEEEEEECEEE-EE--EESSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEE
T ss_pred             EEEEEEEECCcee-Ee--eCCCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEE
Confidence            4555677778763 22  2333678999999999999 899999999999999999765443

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK13502 transcriptional activator RhaR; Provisional

Probab=97.40  E-value=0.00066  Score=62.62  Aligned_cols=52  Identities=13%  Similarity=0.180  Sum_probs=46.4

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee
Q 022278          113 ENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA  165 (300)
Q Consensus       113 PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N  165 (300)
                      |....+.|.|+.-+++||++|++++++ +|+++.+++||.+++|++..|.+..
T Consensus        27 ~~~~~~~H~h~~~~l~~v~~G~~~~~i-~~~~~~l~~g~l~li~~~~~H~~~~   78 (282)
T PRK13502         27 PQDVFAEHTHEFCELVMVWRGNGLHVL-NERPYRITRGDLFYIRAEDKHSYTS   78 (282)
T ss_pred             CCCCCCccccceEEEEEEecCcEEEEE-CCEEEeecCCcEEEECCCCcccccc
Confidence            343345678899999999999999999 9999999999999999999999876

>PRK13500 transcriptional activator RhaR; Provisional

Probab=97.40  E-value=0.00055  Score=64.68  Aligned_cols=48  Identities=17%  Similarity=0.230  Sum_probs=45.1

Q ss_pred             CCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee
Q 022278          117 SALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA  165 (300)
Q Consensus       117 ~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N  165 (300)
                      .+.|.|+.-|++||++|++++.+ +|+.+.+++||.++++++..|.+..
T Consensus        61 ~~~H~H~~~el~~v~~G~g~~~v-~~~~~~l~~Gdl~~I~~~~~H~~~~  108 (312)
T PRK13500         61 FAEHTHDFCELVIVWRGNGLHVL-NDRPYRITRGDLFYIHADDKHSYAS  108 (312)
T ss_pred             CCccccceEEEEEEEcCeEEEEE-CCEEEeecCCeEEEECCCCeecccc
Confidence            45678999999999999999999 9999999999999999999999986

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=97.33  E-value=0.00091  Score=53.39  Aligned_cols=71  Identities=23%  Similarity=0.297  Sum_probs=52.7

Q ss_pred             EEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC-CeEEEEEEEeeccccC
Q 022278          107 YLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE-GSATLVVFERRYASLE  182 (300)
Q Consensus       107 ~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~-~~a~vl~v~~~y~~~~  182 (300)
                      +.++|+||+....+ +.+.+.|+||++|+++  + +++...+.+|+.+++..+..-.+++. +.++++++  --+|+.
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~--v-~~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll--~GePl~   74 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVE--V-GGEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLL--GGEPLN   74 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEESEEE--E-TTTTEEEETTEEEEE-SECEEEEEESSSSEEEEEE--EE----
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEECcEE--E-CCCcceECCCcEEEECCCceEEEEECCCCcEEEEE--EccCCC
Confidence            56788999887655 6788999999999965  6 66668899999999998888888885 89999999  445544

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PLN02288 mannose-6-phosphate isomerase

Probab=97.31  E-value=0.0021  Score=63.11  Aligned_cols=128  Identities=17%  Similarity=0.170  Sum_probs=73.9

Q ss_pred             EEEeccCcEEEeCCCCceEEeeCCeEEEEEE-EeeccccCCCCccee-----ec--cCCCCCCcccCCcee--EEEEeeC
Q 022278          144 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVF-ERRYASLENHITEQI-----VG--STDKQPLLETPGEVF--QLRKLLP  213 (300)
Q Consensus       144 ~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v-~~~y~~~~g~~p~~~-----~~--~~~d~~~~~~~g~~~--~~~~l~p  213 (300)
                      ...|++|+++|+|||.+|.+-...-..+.-- ..+.  ..|..|+.+     +.  +.+..+...+.....  ..+...|
T Consensus       252 ~v~L~PGeaifl~ag~~HAYl~G~~vE~MA~SDNVl--RaGLTpK~~Dv~~L~~~l~f~~~~~~~~~~~~~~~~~~~y~~  329 (394)
T PLN02288        252 YVKLNPGEALYLGANEPHAYLSGECIECMATSDNVV--RAGLTPKFRDVQTLCSMLTYKQGFPEILTGVPVDPYTTRYLP  329 (394)
T ss_pred             eEecCCCCEEEecCCCCceecCCCeEEeeecCCcee--eecCCCccccHHHHHhhccCccCCcccccccccCCCceEECC
Confidence            5789999999999999999875332232211 0011  144444411     11  011111110110000  0112223


Q ss_pred             CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEE--EEccCCcEEEeCCCCc
Q 022278          214 QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW--YPVQAGDVLWMAPFVP  276 (300)
Q Consensus       214 ~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~--~~v~~GD~i~~~~~~~  276 (300)
                      .  -.+|.+.++++.+|..... ....-..++++++|++.+..++..  ..+++|+++|++++..
T Consensus       330 P--~~eF~v~~~~l~~~~~~~~-~~~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~  391 (394)
T PLN02288        330 P--FDEFEVDHCDVPPGASVVF-PAVPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTE  391 (394)
T ss_pred             C--CcceEEEEEEeCCCCeEee-cCCCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCc
Confidence            2  3578888999988864221 112334589999999999887776  5699999999998754

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.26  E-value=0.00033  Score=60.61  Aligned_cols=50  Identities=16%  Similarity=0.438  Sum_probs=41.6

Q ss_pred             ceeeccceEEEEEEeeEEEEeC---CE--EEEccCCcEEEeCCCCceeEEecCCc
Q 022278          236 KEVHYNQHGLLLLEGQGIYRLG---DS--WYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       236 ~~~H~~eh~~~iL~G~G~~~~~---g~--~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      -|+|..+|.-|+|.|.|+..+-   |+  |..+.+||.|-+|||..|||.=+-+-
T Consensus        90 EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~  144 (181)
T COG1791          90 EHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESP  144 (181)
T ss_pred             HhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCC
Confidence            4789999999999999998863   34  45678999999999999999866443

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=97.22  E-value=0.001  Score=62.69  Aligned_cols=52  Identities=10%  Similarity=-0.024  Sum_probs=46.3

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee
Q 022278          113 ENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA  165 (300)
Q Consensus       113 PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N  165 (300)
                      |....+.|-|..=|++||++|++.+.+ +|+++.+.+||.+.++++.+|.+..
T Consensus        35 ~~~m~~~HwH~e~Ei~yv~~G~~~~~i-~g~~~~l~~Gd~ili~s~~~H~~~~   86 (302)
T PRK10371         35 PHIMPTSHWHGQVEVNVPFDGDVEYLI-NNEKVQINQGHITLFWACTPHQLTD   86 (302)
T ss_pred             CCCCCCCCccccEEEEEecCCcEEEEE-CCEEEEEcCCcEEEEecCCcccccc
Confidence            333445678999999999999999999 9999999999999999999999875

>PRK13503 transcriptional activator RhaS; Provisional

Probab=97.18  E-value=0.00063  Score=62.39  Aligned_cols=50  Identities=14%  Similarity=0.176  Sum_probs=45.8

Q ss_pred             cCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC
Q 022278          116 RSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE  166 (300)
Q Consensus       116 ~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~  166 (300)
                      ..+.|.|+.=|++||++|.+++.+ +++.+.+++||.+++|++..|.+.+.
T Consensus        27 ~~~~H~H~~~ei~~v~~G~~~~~i-~~~~~~l~~g~~~~i~~~~~h~~~~~   76 (278)
T PRK13503         27 AFPEHHHDFHEIVIVEHGTGIHVF-NGQPYTLSGGTVCFVRDHDRHLYEHT   76 (278)
T ss_pred             cccccccCceeEEEEecCceeeEe-cCCcccccCCcEEEECCCccchhhhc
Confidence            345678999999999999999999 99999999999999999999998863

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=97.18  E-value=0.0016  Score=60.13  Aligned_cols=96  Identities=18%  Similarity=0.122  Sum_probs=56.7

Q ss_pred             cCCCCCCcccC---C-ceeEEEEee--CCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEE---E
Q 022278          192 STDKQPLLETP---G-EVFQLRKLL--PQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW---Y  261 (300)
Q Consensus       192 ~~~d~~~~~~~---g-~~~~~~~l~--p~~~~-~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~---~  261 (300)
                      ..+|+.|.+.+   | .+...+.|.  +++.+ +.+   ++.|.+|-..|. |.|...+..||++|.  +..||..   .
T Consensus         4 ~~~d~~w~~~~p~~~~~~~~~~~L~gd~~~~g~~~~---~vkf~~g~~~pp-h~H~~~~~~~Vi~G~--~~~~~~~a~~~   77 (251)
T PF14499_consen    4 HADDVKWGPLNPARGDKGPGAAVLWGDPTKDGPSGM---RVKFPAGFSSPP-HIHNADYRGTVISGE--LHNGDPKAAAM   77 (251)
T ss_dssp             GS--EEEE--TTS-TTS--EEEEEEEE--TTS-EEE---EEEE-TT-EE---BEESS-EEEEEEESE--EEETTEE----
T ss_pred             chhhccccccCCCCCCCCcceeeeecCcccCCcceE---EEEcCCCccCCC-cceeeeEEEEEEEeE--EEcCCCcccce
Confidence            35666666544   3 455666665  53433 334   567889999996 799888899999996  5556654   4


Q ss_pred             EccCCcEEEeCCCCceeEEecCCccEEEEEEe
Q 022278          262 PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  293 (300)
Q Consensus       262 ~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  293 (300)
                      .+.+|++.+.|+|.+|.-.+.|++.+.|+-+-
T Consensus        78 ~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g  109 (251)
T PF14499_consen   78 WLPAGSYWFQPAGEPHITAAEGETNLLFIEIG  109 (251)
T ss_dssp             -E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S
T ss_pred             ecCCCceEeccCCCceeeeccCccEEEEEEeC
Confidence            59999999999999999999998889888543

>COG1741 Pirin-related protein [General function prediction only]

Probab=97.03  E-value=0.084  Score=49.56  Aligned_cols=175  Identities=15%  Similarity=0.116  Sum_probs=105.2

Q ss_pred             EEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC--CceEEeeC--C--eEEE--EEEEeecc
Q 022278          109 ANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRAE--G--SATL--VVFERRYA  179 (300)
Q Consensus       109 v~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~--~~H~~~N~--~--~a~v--l~v~~~y~  179 (300)
                      ..+.||...+.|+|. -|.+=||++|+++=.-..|..-.+++||.-..-||  +-|+=.|.  +  +.+.  ||+.-+..
T Consensus        49 ~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP~~  128 (276)
T COG1741          49 DVLAPGRGFPPHPHRGLETVTYVLDGEIEHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLPAA  128 (276)
T ss_pred             ccccCCCcCCCCCCCCcEEEEEEEccEEEEeecCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCchh
Confidence            357788767778775 58888999999998864577889999999999887  45554452  1  2222  46544333


Q ss_pred             ccCCCCcceeecc-CCCCCCcccCCceeEEEEeeCC-C--CC---cc-eEEEEEEecCCcccCcceeeccceEEEEEEee
Q 022278          180 SLENHITEQIVGS-TDKQPLLETPGEVFQLRKLLPQ-A--VP---FD-FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ  251 (300)
Q Consensus       180 ~~~g~~p~~~~~~-~~d~~~~~~~g~~~~~~~l~p~-~--~~---~~-~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~  251 (300)
                      . ++.+|..--.. .+++|....   +++.+...-. .  .+   .+ ..+-.+.+++|+.+..+ --+.+=.+|+++| 
T Consensus       129 ~-k~~~P~yq~~~~~~~~p~~~~---g~~~rvi~G~~~g~~~pv~~~~~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G-  202 (276)
T COG1741         129 D-KMIAPRYQHLAFPDEIPRVEL---GLTARVIAGRDGGLSSPVRQDSLHYVDLRLEAGARLQLP-PAGRRAYLYVIEG-  202 (276)
T ss_pred             h-ccCCcccccccCcccCceeec---ceEEEEeccccCCcccccccceeEEEEEEeCCCceEecC-CCCceEEEEEEEe-
Confidence            2 22345444444 445555444   2344433311 1  11   01 44456677888887664 3344556788888 


Q ss_pred             EEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          252 GIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       252 G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                       .+.+||+.-  ..+|-..+-.+..=.+.+.++.++++|++
T Consensus       203 -~l~v~g~~~--~~~~~l~i~~g~~i~l~a~~~~~a~vLL~  240 (276)
T COG1741         203 -TLEVNGQHE--TDGDGLAILDGDEITLVADSPAGARVLLL  240 (276)
T ss_pred             -EEEEccccc--ccccceEEecCCeEEEEecCCCCeEEEEE
Confidence             666777654  44444444443333566666777888776

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=97.03  E-value=0.0011  Score=55.64  Aligned_cols=48  Identities=31%  Similarity=0.416  Sum_probs=42.3

Q ss_pred             CcccCcceeeccceE-EEEEEeeEEEEeCC---EEEEccCCcEEEeCCCCce
Q 022278          230 GDFLNVKEVHYNQHG-LLLLEGQGIYRLGD---SWYPVQAGDVLWMAPFVPQ  277 (300)
Q Consensus       230 G~~~p~~~~H~~eh~-~~iL~G~G~~~~~g---~~~~v~~GD~i~~~~~~~H  277 (300)
                      |+-.++||-|...|+ +-+|+|++.+.++|   ...+|+.||++.+|+|+.|
T Consensus        52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH  103 (163)
T COG4297          52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGH  103 (163)
T ss_pred             ccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCccc
Confidence            677788888887755 67899999999875   7899999999999999999

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=97.02  E-value=0.0019  Score=59.48  Aligned_cols=59  Identities=14%  Similarity=0.267  Sum_probs=48.5

Q ss_pred             cCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC--CeEEEEEEE
Q 022278          116 RSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE--GSATLVVFE  175 (300)
Q Consensus       116 ~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~--~~a~vl~v~  175 (300)
                      ....|.|+ .-+++||++|++++.+ +|+.+.+++||.+.+|++..|.+...  ....++.+.
T Consensus        35 ~~~~H~H~~~~~l~~~~~G~~~~~~-~~~~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~i~   96 (287)
T TIGR02297        35 NMPVHFHDRYYQLHYLTEGSIALQL-DEHEYSEYAPCFFLTPPSVPHGFVTDLDADGHVLTVR   96 (287)
T ss_pred             CCCCcccccceeEEEEeeCceEEEE-CCEEEEecCCeEEEeCCCCccccccCCCcceEEEEec
Confidence            34667787 6899999999999999 99999999999999999999999852  233445443

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12

Probab=96.97  E-value=0.044  Score=48.33  Aligned_cols=171  Identities=15%  Similarity=0.122  Sum_probs=92.5

Q ss_pred             CCCCeeeccCCCCCcceEEEEecCCCC--CcEEEE--EEEEcCCCcCCCCCCCceEEEEEEECE-EEEEEcCCc-E-EEe
Q 022278           75 TPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMY--LANMQENARSALPPHDVERFIFVVQGS-AMLTNASGV-S-SKL  147 (300)
Q Consensus        75 ~~e~~~~~~~p~~~~~~~~~L~sp~~g--~~f~~~--lv~l~PG~~~~~~~h~gEEf~yVLeG~-v~l~v~gg~-~-~~L  147 (300)
                      +++++...+=.+-.|.+..+.+.|..+  +.|...  +.++...+... .-.+.++.+.+|+|. +.|+. +++ . ..|
T Consensus         2 r~~d~~~~pWkNggG~T~Ei~~~P~~~~~~~F~wRiS~A~V~~~g~FS-~FpG~~R~l~~L~G~gl~L~~-~~~~~~~~l   79 (184)
T PF05962_consen    2 RAEDYPTMPWKNGGGTTREIAIYPEGSAKRDFDWRISIATVEADGPFS-DFPGYDRILTLLEGNGLRLTH-DGQQEHTLL   79 (184)
T ss_dssp             -GGG-EEEE-TTSSEEEEEEEE-SSSCCCCC-SEEEEEEEE-SSEEE----TT-EEEEEEEESS-EEEEE-TTCSE-EEE
T ss_pred             CHHHCCcccccCCCeEEEEEEEcCCCCccCCceEEEEEEEEcCCCCCC-CCCCCcEEEEEEeCCcEEEec-CCCcceecc
Confidence            344444432222345566677766543  345443  55565544421 246889999999999 99999 766 4 459


Q ss_pred             ccCcEEEeCCCCceEEee-CCeEEEEEEEeeccccCCCCcceeeccCCCCCCcccCCceeEEEEee-CCCCCcceEEEEE
Q 022278          148 MVDSYTYLPPNFAHSLRA-EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLL-PQAVPFDFNIHIM  225 (300)
Q Consensus       148 ~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~-p~~~~~~~~~~~~  225 (300)
                      ++++.+.|+.+.+-.-+. +.+++-+-++  |.+-..                     ...++.+. +..      + .+
T Consensus        80 ~p~~~~~F~G~~~v~~~l~~G~~~dfNlM--~r~~~~---------------------~~~~~~~~~~~~------~-~~  129 (184)
T PF05962_consen   80 QPFQPFAFDGDWPVTSELLDGPVRDFNLM--TRRGRW---------------------RARVRVLNQDGT------L-EL  129 (184)
T ss_dssp             -BT--EEEETTS-EEEEESSS-EEEEEEE--E-TTTE---------------------EEEEEEEEEECE------E-EE
T ss_pred             CCCCcEEcCCCCeEEEEECCCCEEEEEEE--ecCCcc---------------------eEEEEEEeCCCc------E-EE
Confidence            999999999998877764 6777776663  322110                     11222221 110      0 00


Q ss_pred             EecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEE
Q 022278          226 DFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRY  289 (300)
Q Consensus       226 tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~f  289 (300)
                      ..          .......+|+++|+..+..+++.+.+.+||.+|+.+  ++.+.-.++..+-+
T Consensus       130 ~~----------~~~~~~l~~~~~G~~~i~~~~~~~~L~~~d~l~~~~--~~~~~l~~~g~ll~  181 (184)
T PF05962_consen  130 KL----------PAASTVLVYVLEGAWSITEGGNCISLSAGDLLLIDD--EEDLPLTGDGQLLW  181 (184)
T ss_dssp             -E----------E--SEEEEEESSS-EEECCCEEEEEE-TT-EEEEES--EECEEEEEECCEEE
T ss_pred             ee----------CCCCEEEEEEeeCcEEEecCCCceEcCCCCEEEEeC--CCceEecCCeeEEE
Confidence            00          111223589999998888888999999999999998  55555555555443

HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=96.91  E-value=0.0027  Score=58.89  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=38.5

Q ss_pred             eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCC
Q 022278          243 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       243 h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      ...|+++|+|.+.+||+.+.+++||+++++|+.+|.+....+
T Consensus        51 ~i~~~~~G~~~~~~~~~~~~~~~g~~i~i~p~~~h~~~~~~~   92 (290)
T PRK10572         51 ILNLTIRGQGVIFNGGRAFVCRPGDLLLFPPGEIHHYGRHPD   92 (290)
T ss_pred             EEEEEEeccEEEecCCeeEecCCCCEEEECCCCceeeccCCC
Confidence            367899999999999999999999999999999999877655

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=96.82  E-value=0.0019  Score=55.65  Aligned_cols=48  Identities=17%  Similarity=0.198  Sum_probs=35.6

Q ss_pred             CCCCCCceEEEEEEECEEEEEE--cCCcE--EEeccCcEEEeCCCCceEEee
Q 022278          118 ALPPHDVERFIFVVQGSAMLTN--ASGVS--SKLMVDSYTYLPPNFAHSLRA  165 (300)
Q Consensus       118 ~~~~h~gEEf~yVLeG~v~l~v--~gg~~--~~L~~Gds~yfpa~~~H~~~N  165 (300)
                      ..|.|.-||.-|+++|+..+.+  .+++.  ..+++||.+.+|+|+.|++.-
T Consensus        86 ~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~  137 (157)
T PF03079_consen   86 EEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTL  137 (157)
T ss_dssp             S-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEE
T ss_pred             eeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEc
Confidence            3457999999999999998877  23443  479999999999999999984

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=96.82  E-value=0.0027  Score=52.91  Aligned_cols=70  Identities=17%  Similarity=0.296  Sum_probs=39.1

Q ss_pred             EcCCCcCCCC-CCCceEEEEEEECEEEEEEcCC---cEEEeccCc-EEEeCCCCceEEee-CCeEEEEEE-Eeeccc
Q 022278          111 MQENARSALP-PHDVERFIFVVQGSAMLTNASG---VSSKLMVDS-YTYLPPNFAHSLRA-EGSATLVVF-ERRYAS  180 (300)
Q Consensus       111 l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg---~~~~L~~Gd-s~yfpa~~~H~~~N-~~~a~vl~v-~~~y~~  180 (300)
                      .++|...+.| ++..+++++|++|++++.+.++   +++.|...+ .+++||+..|.+.| .+.+.+|++ ...|.|
T Consensus        40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~svlLv~as~~yd~  116 (131)
T PF05523_consen   40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSEDSVLLVLASEPYDE  116 (131)
T ss_dssp             --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT-EEEEEESS---G
T ss_pred             CCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCCcEEEEEcCCCCCh
Confidence            4444434566 4678999999999999998332   568888775 89999999999998 444555544 555655

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PHA01976 helix-turn-helix protein

Probab=96.62  E-value=0.00015  Score=52.77  Aligned_cols=42  Identities=21%  Similarity=0.243  Sum_probs=38.2

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK   68 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~   68 (300)
                      -|++++|+++|+|++.+|++|+|...|+.     |+++||++...|+
T Consensus        16 lt~~~lA~~~gvs~~~v~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~   62 (67)
T PHA01976         16 WSAPELSRRAGVRHSLIYDFEADKRLPNLKTLLRLADALGVTLDWLC   62 (67)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHh
Confidence            47899999999999999999999999997     8999999887764

>TIGR03070 couple_hipB transcriptional regulator, y4mF family

Probab=96.60  E-value=0.00028  Score=49.16  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=32.4

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCc
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFT   63 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~t   63 (300)
                      |++++|+++|+|++.+|++|+|...|+.     |++.||++
T Consensus        17 tq~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~i~~~lgv~   57 (58)
T TIGR03070        17 TQADLADLAGVGLRFIRDVENGKPTVRLDKVLRVLDALGLE   57 (58)
T ss_pred             CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHcCCC
Confidence            6789999999999999999999998887     77787765

Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.

>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B

Probab=96.59  E-value=0.0001  Score=53.14  Aligned_cols=42  Identities=14%  Similarity=0.162  Sum_probs=34.4

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.++|+++++|+++||++|+|...|+.     |++.+|++...|+.
T Consensus        14 t~~~~a~~~~i~~~~i~~~e~g~~~~~~~~l~~i~~~~~v~~~~l~~   60 (64)
T PF12844_consen   14 TQKDLAEKLGISRSTISKIENGKRKPSVSTLKKIAEALGVSLDELFD   60 (64)
T ss_dssp             -HHHHHHHHTS-HHHHHHHHTTSS--BHHHHHHHHHHHTS-HHHHCC
T ss_pred             CHHHHHHHHCcCHHHHHHHHCCCcCCCHHHHHHHHHHhCCCHHHHhc
Confidence            7889999999999999999999999997     99999999888775

>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein

Probab=96.57  E-value=0.00034  Score=54.69  Aligned_cols=36  Identities=11%  Similarity=0.204  Sum_probs=33.4

Q ss_pred             ccccccCCCCcceeeecCCCCChhh-----hhcccCCccee
Q 022278           31 SILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSV   66 (300)
Q Consensus        31 ~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~   66 (300)
                      +||+++|+|++.||++|||..+||.     |+++||++.++
T Consensus        48 qLAe~~GIs~stLs~iE~g~~~Ps~~tL~kI~~aLgi~l~v   88 (89)
T TIGR02684        48 QLARKTGLSRESLYKALSGKGNPTFDTILKVTKALGLKLTA   88 (89)
T ss_pred             HHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHcCCceee
Confidence            5999999999999999999999999     99999998764

gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module.

>PRK13890 conjugal transfer protein TrbA; Provisional

Probab=96.55  E-value=0.00019  Score=59.03  Aligned_cols=43  Identities=14%  Similarity=0.121  Sum_probs=40.1

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+++||+++|+|+++||++|||...||.     |+++|+++...++.
T Consensus        19 lsq~eLA~~~Gis~~~is~iE~g~~~ps~~~l~kIa~aL~v~~~~L~~   66 (120)
T PRK13890         19 MTKKELSERSGVSISFLSDLTTGKANPSLKVMEAIADALETPLPLLLE   66 (120)
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhc
Confidence            37899999999999999999999999998     99999999999875

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.53  E-value=0.011  Score=51.43  Aligned_cols=68  Identities=15%  Similarity=0.199  Sum_probs=50.2

Q ss_pred             CCCCCceEEEEEEECEEEEEE--cCCcEE--EeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCcc
Q 022278          119 LPPHDVERFIFVVQGSAMLTN--ASGVSS--KLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITE  187 (300)
Q Consensus       119 ~~~h~gEEf~yVLeG~v~l~v--~gg~~~--~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p~  187 (300)
                      .|.|.-+|.-|+|+|+.-+.+  .+|+.+  .+.+||.+.+|+|+.|++.=.+.-. +.-.|-|...+|+.|-
T Consensus        90 EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~-f~AvRlF~~~~gWVa~  161 (181)
T COG1791          90 EHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPN-FKAVRLFTEPEGWVAI  161 (181)
T ss_pred             HhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCc-EEEEEEeeCCCCceee
Confidence            457999999999999998887  345554  6789999999999999998433222 3333556666776543

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=96.49  E-value=0.074  Score=47.79  Aligned_cols=170  Identities=18%  Similarity=0.222  Sum_probs=101.1

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEE-c--CCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCcce
Q 022278          112 QENARSALPPHDVERFIFVVQGSAMLTN-A--SGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQ  188 (300)
Q Consensus       112 ~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~--gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p~~  188 (300)
                      .|+.+...|-.++|||+|=++|.+.+.+ +  +-+...++.||++.+|+.++|+-.-=..+.=|+|+++-.-.+..--..
T Consensus        41 GPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFantvGlVVEr~R~~tE~D~iR~  120 (279)
T KOG3995|consen   41 GPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRY  120 (279)
T ss_pred             CCCcccccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhccceeEEEEeccCCCccceEEE
Confidence            5666667778899999999999999987 2  224578999999999999999743211122244444332222111222


Q ss_pred             eeccCCC--------------------------CCC---cccCC-----ceeEEEEee---CCC----------------
Q 022278          189 IVGSTDK--------------------------QPL---LETPG-----EVFQLRKLL---PQA----------------  215 (300)
Q Consensus       189 ~~~~~~d--------------------------~~~---~~~~g-----~~~~~~~l~---p~~----------------  215 (300)
                      .+|+-.+                          .+.   +|.+|     .-+..+++.   |-+                
T Consensus       121 yvg~~~~vlfE~wfy~~Dlgtql~p~I~eF~~s~E~rTgkp~~~~~~C~~pf~~~t~~~~~P~s~~~~~~~h~~e~~~gp  200 (279)
T KOG3995|consen  121 YVGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEEYRTGKPIPDQLLCEPPFPLSTRSIMEPMSLDAWLDSHHRELQAGP  200 (279)
T ss_pred             EeccchhhHHHHHhhHHhhhhhhHHHHHHHhcchhhhcCCCCCCccccCCCccccccccccccchhHHHHHHHHHHhcCC
Confidence            3332222                          111   11111     000111111   111                


Q ss_pred             --C-CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          216 --V-PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       216 --~-~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                        . +..+.-.++-+--|.+-.  +....+--++.++|..++..+|..+-.++...+.++++-.-|..--|
T Consensus       201 ~~~~g~~y~t~v~~~g~gs~~~--~~~~v~~~~w~~e~s~vv~~~g~~~~~~~~s~~~~~~~s~~~~~~~g  269 (279)
T KOG3995|consen  201 LSLFGDTYETQVIAYGQGSSEG--LRQNVDVWLWQLEGSSVVTMGGRRLSLAPDSLLVLAGTSYAWERTQG  269 (279)
T ss_pred             eeeeCccceeeEEEeccccchh--hcCceEEEEEEecCceEEeecCeEEeeCCcceEEEcCcchhhhhccC
Confidence              0 123444556666666543  34445555788999999999999999999999999998766554444

>TIGR00270 conserved hypothetical protein TIGR00270

Probab=96.36  E-value=0.00037  Score=59.87  Aligned_cols=42  Identities=14%  Similarity=0.188  Sum_probs=39.7

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+++||+++++|+++||++|||...|+.     |+++||++...++.
T Consensus        84 SqeeLA~~lgvs~s~IsriE~G~~~Ps~~~l~kLa~~Lgvsl~el~~  130 (154)
T TIGR00270        84 SQEQLAKKIQEKESLIKKIENAEIEPEPKVVEKLEKLLKIKLREQVP  130 (154)
T ss_pred             CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHcc
Confidence            6899999999999999999999999998     89999999999875

>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould)

Probab=96.32  E-value=0.00018  Score=50.17  Aligned_cols=39  Identities=15%  Similarity=0.209  Sum_probs=33.2

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCccee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSV   66 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~   66 (300)
                      |+.++|+++|+|++.+|++|+|...|+.     |+.+||++...
T Consensus        11 s~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ia~~l~~~~~~   54 (55)
T PF01381_consen   11 SQKELAEKLGISRSTISRIENGKRNPSLDTLKKIAKALGVSPEY   54 (55)
T ss_dssp             -HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHHHHHHHTSEHHH
T ss_pred             CHHHHHHHhCCCcchhHHHhcCCCCCCHHHHHHHHHHHCCCHHH
Confidence            5688999999999999999999999998     88888887654

; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....

>PRK08359 transcription factor; Validated

Probab=96.31  E-value=0.00054  Score=60.03  Aligned_cols=43  Identities=9%  Similarity=-0.002  Sum_probs=40.0

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKRD   70 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~~   70 (300)
                      ||++||++.|+|.++|+++|||...|++     |+++|+++...++++
T Consensus       100 SQeeLA~~lgvs~stI~~iE~G~~~Ps~~~l~kLak~l~VsL~e~~~~  147 (176)
T PRK08359        100 SYEELSHEVGLSVNDLRRIAHGEYEPTIKEAKKLERYFKIKLIERVEE  147 (176)
T ss_pred             CHHHHHHHhCCCHHHHHHHHCCCcCCCHHHHHHHHHHhCCcccccccc
Confidence            7899999999999999999999999999     999999998887753

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=96.26  E-value=0.021  Score=52.91  Aligned_cols=52  Identities=12%  Similarity=0.079  Sum_probs=43.3

Q ss_pred             CCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee---CCeEEEEEE
Q 022278          122 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA---EGSATLVVF  174 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N---~~~a~vl~v  174 (300)
                      ..+-++.||++|+.++.+ +++.+.+++||.+.+||+.+|.+..   .......|+
T Consensus        47 ~~~~~i~~~~~G~~~~~~-~~~~~~~~~g~~i~i~p~~~h~~~~~~~~~~~~~~~~  101 (290)
T PRK10572         47 MKGYILNLTIRGQGVIFN-GGRAFVCRPGDLLLFPPGEIHHYGRHPDSDEWYHQWV  101 (290)
T ss_pred             ccceEEEEEEeccEEEec-CCeeEecCCCCEEEECCCCceeeccCCCCCceeEEEE
Confidence            456788999999999999 9999999999999999999999875   233344455

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=96.25  E-value=0.021  Score=47.61  Aligned_cols=75  Identities=15%  Similarity=0.143  Sum_probs=44.8

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC----EEEEccCCc-EEEeCCCCceeEEecCCccEEEEEEe
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD----SWYPVQAGD-VLWMAPFVPQWYAALGKTRTRYLLYK  293 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g----~~~~v~~GD-~i~~~~~~~H~~~n~G~e~~~fi~~k  293 (300)
                      .+.+-+...++|..=+.|-|+..++.+++++|+..+.+++    +.+.+...+ .+++||++.|++.|.+++ +.-|++.
T Consensus        32 ~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~a  110 (131)
T PF05523_consen   32 KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVLA  110 (131)
T ss_dssp             -EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEEEE
T ss_pred             cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEEEc
Confidence            3555555566776566666667778999999999999765    566666654 899999999999999887 7777765


Q ss_pred             e
Q 022278          294 D  294 (300)
Q Consensus       294 d  294 (300)
                      |
T Consensus       111 s  111 (131)
T PF05523_consen  111 S  111 (131)
T ss_dssp             S
T ss_pred             C
Confidence            4

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PRK06424 transcription factor; Provisional

Probab=96.15  E-value=0.00073  Score=57.42  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCccee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSV   66 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~   66 (300)
                      ||++||+++|+|++.||++|||...|+.     |+++||++.+.
T Consensus        99 SQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvsl~e  142 (144)
T PRK06424         99 SQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITLIE  142 (144)
T ss_pred             CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCCC
Confidence            6899999999999999999999999998     89999988754

>TIGR02612 mob_myst_A mobile mystery protein A

Probab=96.13  E-value=0.00056  Score=58.52  Aligned_cols=44  Identities=11%  Similarity=-0.108  Sum_probs=39.1

Q ss_pred             ccCCcccccccCCCCcceeeecCCCCC--hhh-----hhcccCCcceeeee
Q 022278           26 FCSAPSILDRETSSKPMYWKVTNPTLS--PSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        26 ~~~~~~~a~r~~lsk~~~Sqver~~~s--ps~-----I~~~lg~trs~f~~   69 (300)
                      =.|+++||+++|+|++.||++|||..+  |+.     |+++||++...||.
T Consensus        38 GmTq~eLAerlGVS~~tIs~iE~G~~~~~psl~~L~kIA~aLgv~~~~l~~   88 (150)
T TIGR02612        38 GMSGAQLAGRLGVTPQRVEALEKSELSGTVTLKTLRAAAEALDCTFVYAFV   88 (150)
T ss_pred             CCCHHHHHHHhCCCHHHHHHHHcCCCCCCCCHHHHHHHHHHcCCCHHHHhC
Confidence            367899999999999999999999864  665     99999999999885

Members of this protein family are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein B, a member of the Fic protein family (pfam02661). This protein is encoded by the upstream member of the gene pair and belongs to a family of helix-turn-helix DNA binding proteins (pfam01381).

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.06  E-value=0.0011  Score=65.31  Aligned_cols=39  Identities=23%  Similarity=0.362  Sum_probs=35.5

Q ss_pred             CccCCcccccccCCCCcceeeecCCCC-Chhh-----hhcccCCc
Q 022278           25 GFCSAPSILDRETSSKPMYWKVTNPTL-SPSH-----LQDLPGFT   63 (300)
Q Consensus        25 ~~~~~~~~a~r~~lsk~~~Sqver~~~-sps~-----I~~~lg~t   63 (300)
                      ..||+++||+.+|.||+|+||+||+.. +||.     |.++||++
T Consensus         2 ~~~~~~~~~~~~~~~~~y~~~l~~~~~~~ps~~~~~~~~~~~~~~   46 (399)
T PRK08099          2 QGCTLQQVADASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLE   46 (399)
T ss_pred             CCCcHHHHHHHhCCcHHHHHHHhcCCCCCccHHHHHHHHHHhCCC
Confidence            579999999999999999999999875 6888     88899887

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=96.03  E-value=0.068  Score=43.81  Aligned_cols=53  Identities=26%  Similarity=0.318  Sum_probs=41.8

Q ss_pred             EEEEEEecCCcccCcceeec-cceEEEEEEeeEEEE-eCCEEEEccCCcEEEeCCCCce
Q 022278          221 NIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYR-LGDSWYPVQAGDVLWMAPFVPQ  277 (300)
Q Consensus       221 ~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~-~~g~~~~v~~GD~i~~~~~~~H  277 (300)
                      ..-+..=.||..    +-++ +.|.-|||+|+++|+ ++|+-.+++|||..++++|-.-
T Consensus        46 ~~GiWe~TpG~~----r~~y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g  100 (116)
T COG3450          46 ETGIWECTPGKF----RVTYDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKG  100 (116)
T ss_pred             eEeEEEecCccc----eEEcccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeE
Confidence            344676678875    3444 446789999999999 6679999999999999999654

>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A

Probab=95.99  E-value=0.00042  Score=50.20  Aligned_cols=39  Identities=21%  Similarity=0.201  Sum_probs=30.4

Q ss_pred             CCcccccccCCCCcceeeecCCCCC-hhh-----hhcccCCccee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLS-PSH-----LQDLPGFTRSV   66 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~s-ps~-----I~~~lg~trs~   66 (300)
                      |++++|+++|+|++++|++|+|... |+.     |++++|++.+.
T Consensus        16 s~~~lA~~~g~s~s~v~~iE~G~~~~p~~~~l~~l~~~l~~~~~~   60 (64)
T PF13560_consen   16 SQAQLADRLGVSQSTVSRIERGRRPRPSPDTLQRLARALGVPPDE   60 (64)
T ss_dssp             -HHHHHHHHTS-HHHHHHHHTTSSSS-BHHHHHHHHHHTT--HHH
T ss_pred             CHHHHHHHHCcCHHHHHHHHCCCCCCCCHHHHHHHHHHHCcCHHH
Confidence            7899999999999999999999994 887     88888887654

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=95.94  E-value=0.037  Score=47.68  Aligned_cols=77  Identities=14%  Similarity=0.111  Sum_probs=54.7

Q ss_pred             ceEEEEEEecCCcccCcceeeccc-----eEEEEE-EeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQ-----HGLLLL-EGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~e-----h~~~iL-~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      -..++...+.||+.|.. |..+..     |.-.+. .....++++|+.+..++|.++++..-.+|+..|.|+++ +.+++
T Consensus        79 ~~~~~~s~l~pg~~I~p-H~d~~~~~lR~Hl~L~~p~~~~~~~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~-Rv~L~  156 (163)
T PF05118_consen   79 LGRVRFSRLPPGTHIKP-HRDPTNLRLRLHLPLIVPNPGCYIRVGGETRHWREGECWVFDDSFEHEVWNNGDED-RVVLI  156 (163)
T ss_dssp             CEEEEEEEEECTEEEEE-E-SS-TTEEEEEEEEC--STTEEEEETTEEEB--CTEEEEE-TTS-EEEEESSSS--EEEEE
T ss_pred             hhhEEEEEECCCCEECC-eeCCCCcceEEEEEEEcCCCCeEEEECCeEEEeccCcEEEEeCCEEEEEEeCCCCC-EEEEE
Confidence            35688889999999986 455443     555556 47899999999999999999999999999999999764 55555


Q ss_pred             eecCC
Q 022278          293 KDVNR  297 (300)
Q Consensus       293 kd~nr  297 (300)
                      =|+-|
T Consensus       157 vD~~h  161 (163)
T PF05118_consen  157 VDFWH  161 (163)
T ss_dssp             EEEE-
T ss_pred             EEeec
Confidence            66544

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=95.90  E-value=0.025  Score=45.07  Aligned_cols=66  Identities=20%  Similarity=0.234  Sum_probs=48.1

Q ss_pred             EEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          224 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       224 ~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      -++++||+.+-..-...++..+|+++|.+  .++|+..++.+|+.+++.++..=.+.+.+ ++.+||++
T Consensus         3 di~l~~g~~~~~~~~~~~~~~iyv~~G~~--~v~~~~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll   68 (104)
T PF05726_consen    3 DIKLEPGASFTLPLPPGHNAFIYVLEGSV--EVGGEEDPLEAGQLVVLEDGDEIELTAGE-EGARFLLL   68 (104)
T ss_dssp             EEEE-TT-EEEEEEETT-EEEEEEEESEE--EETTTTEEEETTEEEEE-SECEEEEEESS-SSEEEEEE
T ss_pred             EEEECCCCEEEeecCCCCEEEEEEEECcE--EECCCcceECCCcEEEECCCceEEEEECC-CCcEEEEE
Confidence            36789999976544556788899999995  55776699999999999977666777765 77888775

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PRK09726 antitoxin HipB; Provisional

Probab=95.81  E-value=0.0012  Score=51.14  Aligned_cols=43  Identities=2%  Similarity=-0.004  Sum_probs=38.7

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|++++|+++|+|++.+|++|||...|+.     |+++||++...+..
T Consensus        26 ltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~~~~~   73 (88)
T PRK09726         26 WTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDA   73 (88)
T ss_pred             CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcchhcc
Confidence            47899999999999999999999988887     89999999888554

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=95.55  E-value=0.065  Score=43.27  Aligned_cols=61  Identities=20%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             CcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCC--CCceeEEecCC-ccEEEE
Q 022278          230 GDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAP--FVPQWYAALGK-TRTRYL  290 (300)
Q Consensus       230 G~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~--~~~H~~~n~G~-e~~~fi  290 (300)
                      +.-++.|.|...|-.-||++|+....+. |....+++||+-||.+  |+.|+=.|.++ ++++.|
T Consensus        39 ~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l  103 (107)
T PF02678_consen   39 GAGFPMHPHRGFEIVTYVLEGELRHRDSLGNRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL  103 (107)
T ss_dssp             TTEEEEEEECSEEEEEEEEESEEEEEETTSEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred             CCCCCCcCCCCceEEEEEecCEEEEECCCCCeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence            5556777788888888999999999976 6778999999999965  57899999988 888776

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF12852 Cupin_6: Cupin

Probab=95.46  E-value=0.051  Score=47.21  Aligned_cols=42  Identities=14%  Similarity=0.135  Sum_probs=36.4

Q ss_pred             eEEEEEEeeEEEEeCC--EEEEccCCcEEEeCCCCceeEEecCC
Q 022278          243 HGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       243 h~~~iL~G~G~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      .-.+|++|++.+.++|  +...+++||++++|.|.+|.+....+
T Consensus        37 ~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~~~~   80 (186)
T PF12852_consen   37 SFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSSDPD   80 (186)
T ss_pred             EEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence            3578999999999876  89999999999999999999954433

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=95.41  E-value=0.028  Score=48.55  Aligned_cols=63  Identities=21%  Similarity=0.429  Sum_probs=49.6

Q ss_pred             EEEEEecCCcccCc---------ceeeccceEEEEEEeeEEEEeC---CEE--EEccCCcEEEeCCCCceeEEecCC
Q 022278          222 IHIMDFQPGDFLNV---------KEVHYNQHGLLLLEGQGIYRLG---DSW--YPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       222 ~~~~tl~PG~~~p~---------~~~H~~eh~~~iL~G~G~~~~~---g~~--~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      |.++++-|+-.-.+         .|-|..|++=|||+|.|-+.+.   +.|  ..|++||.|++|+|.-|-|.-+-+
T Consensus        65 ~d~~~~~~e~~~nfdeKvk~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~  141 (179)
T KOG2107|consen   65 MDICTVCPETLPNFDEKVKSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPS  141 (179)
T ss_pred             eeEEEEchhhcccHHHHHHHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCch
Confidence            45677777665444         4678899999999999988754   566  467999999999999999876543

>PF12852 Cupin_6: Cupin

Probab=95.38  E-value=0.034  Score=48.33  Aligned_cols=41  Identities=29%  Similarity=0.388  Sum_probs=37.7

Q ss_pred             ceEEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEEee
Q 022278          124 VERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRA  165 (300)
Q Consensus       124 gEEf~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~~N  165 (300)
                      .-.|.+|++|+..+.+ ++  +...|.+||.+.+|.+.+|.+..
T Consensus        35 ~~~fh~V~~G~~~l~~-~~~~~~~~L~~GDivllp~g~~H~l~~   77 (186)
T PF12852_consen   35 GASFHVVLRGSCWLRV-PGGGEPIRLEAGDIVLLPRGTAHVLSS   77 (186)
T ss_pred             ceEEEEEECCeEEEEE-cCCCCeEEecCCCEEEEcCCCCeEeCC
Confidence            4789999999999998 54  78999999999999999999985

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=95.32  E-value=0.23  Score=43.87  Aligned_cols=50  Identities=16%  Similarity=0.306  Sum_probs=34.5

Q ss_pred             CceEEEEEEECEEEEEE--cCC----cE--EEeccCcEEEeCCCCceEEee--CCeEEEE
Q 022278          123 DVERFIFVVQGSAMLTN--ASG----VS--SKLMVDSYTYLPPNFAHSLRA--EGSATLV  172 (300)
Q Consensus       123 ~gEEf~yVLeG~v~l~v--~gg----~~--~~L~~Gds~yfpa~~~H~~~N--~~~a~vl  172 (300)
                      ..-|+.+||+|+..+.+  .++    +.  ..+++||.+++||+-.|+..|  +++..+.
T Consensus        82 ~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~  141 (182)
T PF06560_consen   82 SYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFA  141 (182)
T ss_dssp             T--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEE
T ss_pred             CCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECCCCcEEEE
Confidence            36899999999998876  233    33  588999999999999999999  5554443

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=95.31  E-value=0.002  Score=61.14  Aligned_cols=42  Identities=10%  Similarity=-0.046  Sum_probs=39.9

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+++||+++|+|+++||++|||...|+.     |+++||++...++.
T Consensus        43 tq~~lA~~~gvs~~~i~~~E~g~~~ps~~~l~~ia~~l~v~~~~l~~   89 (309)
T PRK08154         43 SRKVLAQASGVSERYLAQLESGQGNVSILLLRRVARALGCSLADLLG   89 (309)
T ss_pred             CHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHhC
Confidence            8899999999999999999999999998     99999999998875

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=95.15  E-value=0.13  Score=44.99  Aligned_cols=77  Identities=17%  Similarity=0.182  Sum_probs=49.5

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEE---cCC---------cEEEeccCcEEEeCCCCceEEeeC--
Q 022278          102 SHFVMYLANMQENARSALPPHDV-ERFIFVVQGSAMLTN---ASG---------VSSKLMVDSYTYLPPNFAHSLRAE--  166 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v---~gg---------~~~~L~~Gds~yfpa~~~H~~~N~--  166 (300)
                      ..|+.+++.-.||..++.|.|++ .=++.|++|+++-+.   .++         +...+..|....++++--|+++|.  
T Consensus        73 ~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~  152 (175)
T PF05995_consen   73 ERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSG  152 (175)
T ss_dssp             CT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-S
T ss_pred             CCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCC
Confidence            57999999999999999998875 667889999987653   233         234466777777899999999872  


Q ss_pred             -Ce-EEEEEEEeec
Q 022278          167 -GS-ATLVVFERRY  178 (300)
Q Consensus       167 -~~-a~vl~v~~~y  178 (300)
                       ++ +.+.++..++
T Consensus       153 ~~~avSLHvYspPl  166 (175)
T PF05995_consen  153 DEPAVSLHVYSPPL  166 (175)
T ss_dssp             SS-EEEEEEEES--
T ss_pred             CCCEEEEEEcCCCh
Confidence             32 3455554444

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=95.13  E-value=0.12  Score=49.91  Aligned_cols=65  Identities=15%  Similarity=0.295  Sum_probs=57.5

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcC-CcEEEeccCcEEEeCCCCceEEeeCC
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRAEG  167 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~g-g~~~~L~~Gds~yfpa~~~H~~~N~~  167 (300)
                      ..|+...+++++|.++..+.-++-..+.|++|+.++.. + +....++.||.+|+||+.+-.++...
T Consensus       331 ~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~-~t~~~~~v~rG~V~fI~a~~~i~~~~~s  396 (411)
T KOG2757|consen  331 EEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKT-DTDSKILVNRGDVLFIPANHPIHLSSSS  396 (411)
T ss_pred             cceeEEEeecCCCceEEeecCCCceEEEEEecceEEec-CCCCceeeccCcEEEEcCCCCceeeccC
Confidence            48999999999977766667888999999999999998 7 88999999999999999998888633

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=95.07  E-value=0.066  Score=49.71  Aligned_cols=44  Identities=20%  Similarity=0.262  Sum_probs=38.9

Q ss_pred             eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCcc
Q 022278          243 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR  286 (300)
Q Consensus       243 h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  286 (300)
                      ..+++++|++.+..+|..+.++|||+++++++.||.+...++..
T Consensus        73 ~l~~~~~G~~~~~~~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~  116 (302)
T PRK09685         73 FTVFQLSGHAIIEQDDRQVQLAAGDITLIDASRPCSIYPQGLSE  116 (302)
T ss_pred             EEEEEecceEEEEECCeEEEEcCCCEEEEECCCCcEeecCCCce
Confidence            35677999999999999999999999999999999988766543

>PRK09706 transcriptional repressor DicA; Reviewed

Probab=95.01  E-value=0.0022  Score=53.42  Aligned_cols=42  Identities=12%  Similarity=-0.031  Sum_probs=37.9

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.++|+++|+|.+.+|++|||...|+.     |+++||++...++.
T Consensus        20 tq~~lA~~~gvs~~~is~~E~g~~~p~~~~l~~la~~l~vs~~~l~~   66 (135)
T PRK09706         20 SQRSLAKAVKVSHVSISQWERDETEPTGKNLFALAKALQCSPTWLLF   66 (135)
T ss_pred             CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence            6789999999999999999999999986     89999999887653

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=94.99  E-value=0.19  Score=47.97  Aligned_cols=65  Identities=17%  Similarity=0.324  Sum_probs=51.0

Q ss_pred             CCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC-CceEEeeC
Q 022278           99 AMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN-FAHSLRAE  166 (300)
Q Consensus        99 ~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~-~~H~~~N~  166 (300)
                      .....|..+...+..  ......+.+=..++|++|+.++.. +++++.|++|+++++|++ .+-.++.+
T Consensus       237 v~~~~F~l~~~~i~~--~~~~~~~~~~~il~v~eG~~~l~~-~~~~~~l~~G~s~~ipa~~~~~~i~g~  302 (312)
T COG1482         237 VPNEDFALYKWDISG--TAEFIKQESFSILLVLEGEGTLIG-GGQTLKLKKGESFFIPANDGPYTIEGE  302 (312)
T ss_pred             ccccceEEEEEeccC--hhhhccCCCcEEEEEEcCeEEEec-CCEEEEEcCCcEEEEEcCCCcEEEEec
Confidence            445678888887764  122224568899999999999998 999999999999999999 66666653

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=94.90  E-value=0.18  Score=46.90  Aligned_cols=79  Identities=14%  Similarity=0.305  Sum_probs=60.1

Q ss_pred             eeCCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC-EEEEccCC--------cEEEeCCCCceeEE
Q 022278          211 LLPQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD-SWYPVQAG--------DVLWMAPFVPQWYA  280 (300)
Q Consensus       211 l~p~~~~-~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g-~~~~v~~G--------D~i~~~~~~~H~~~  280 (300)
                      ..|+..+ .-+.+.+++|++|..... .....|=++.+|+|++.+..|| +++.+..-        |.+|++.|..=-+.
T Consensus        17 i~~~~~g~~~~~~~~l~L~~g~~~~~-~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~   95 (261)
T PF04962_consen   17 ITPENAGWMYMGFGVLRLEAGESLEF-ELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIF   95 (261)
T ss_dssp             CTCCCCCCCCBECCCEEEECCHCCCC-CCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEE
T ss_pred             ECCCccCccccceEEEEecCCCEEec-cCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEE
Confidence            4455444 356778999999999876 5777788899999999999999 99999998        99999999998888


Q ss_pred             ecCCccEEEEEE
Q 022278          281 ALGKTRTRYLLY  292 (300)
Q Consensus       281 n~G~e~~~fi~~  292 (300)
                      +..+  ++|.+.
T Consensus        96 a~~~--ae~~~~  105 (261)
T PF04962_consen   96 ASTD--AEFAVC  105 (261)
T ss_dssp             ESST--EEEEEE
T ss_pred             EcCC--CEEEEE
Confidence            8544  555544

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=94.85  E-value=0.34  Score=48.08  Aligned_cols=54  Identities=22%  Similarity=0.247  Sum_probs=43.9

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEE
Q 022278          121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  175 (300)
Q Consensus       121 ~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~  175 (300)
                      ..+|++.+||-+|++.+.- +=-...+++||++.+|.|+.+++.-.+++|.++++
T Consensus       143 NaDGD~Li~~q~G~l~l~T-e~G~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E  196 (424)
T PF04209_consen  143 NADGDELIFPQQGSLRLET-EFGRLDVRPGDYVVIPRGTRFRVELPGPARGYIIE  196 (424)
T ss_dssp             ESSEEEEEEEEES-EEEEE-TTEEEEE-TTEEEEE-TT--EEEE-SSSEEEEEEE
T ss_pred             cCCCCEEEEEEECCEEEEe-cCeeEEEcCCeEEEECCeeEEEEEeCCCceEEEEE
Confidence            5899999999999999997 65678899999999999999999867999999998

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=94.69  E-value=0.089  Score=44.29  Aligned_cols=65  Identities=18%  Similarity=0.224  Sum_probs=49.0

Q ss_pred             CCcCCCC--CCCceEEEEEEECEEEEEEc--CCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccc
Q 022278          114 NARSALP--PHDVERFIFVVQGSAMLTNA--SGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYAS  180 (300)
Q Consensus       114 G~~~~~~--~h~gEEf~yVLeG~v~l~v~--gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~  180 (300)
                      |+....|  +.+..|.+-|++|+..+.++  +|++..++.||.+.+|+|+.|. ++...+.|.++ -.|.|
T Consensus        52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~-rl~sS~DF~Vv-GaYp~  120 (163)
T COG4297          52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHC-RLHSSADFQVV-GAYPP  120 (163)
T ss_pred             ccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCcccc-cccCCCCeEEE-cccCC
Confidence            4444444  34568999999999999992  4678999999999999999995 34555666665 45655

>PRK10579 hypothetical protein; Provisional

Probab=94.29  E-value=0.25  Score=39.00  Aligned_cols=60  Identities=12%  Similarity=0.110  Sum_probs=45.8

Q ss_pred             EcCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278          111 MQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  173 (300)
Q Consensus       111 l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~  173 (300)
                      |.||. .+. .-..-|..-|++|++++.+ .|  +..+..+|+++.+|++....++.++.+..++
T Consensus        30 m~pGe-y~F-~T~~~E~MeivsG~l~V~L-pg~~ew~~~~aG~sF~VpanssF~l~v~~~t~Y~C   91 (94)
T PRK10579         30 MAEGE-YTF-STAEPEEMTVISGALNVLL-PGATDWQVYEAGEVFNVPGHSEFHLQVAEPTSYLC   91 (94)
T ss_pred             EeeeE-EEE-cCCCcEEEEEEeeEEEEEC-CCCcccEEeCCCCEEEECCCCeEEEEECcceeeEE
Confidence            45664 222 2344678889999999999 54  4589999999999999999999766665554

>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]

Probab=94.28  E-value=0.44  Score=43.61  Aligned_cols=112  Identities=13%  Similarity=0.202  Sum_probs=73.9

Q ss_pred             CceEE-EEEEECEEEEEEcCCcEEEeccCcEEEeCCC-CceEEee---CCeEEEEEEEeeccccCCCCcceeeccCCCCC
Q 022278          123 DVERF-IFVVQGSAMLTNASGVSSKLMVDSYTYLPPN-FAHSLRA---EGSATLVVFERRYASLENHITEQIVGSTDKQP  197 (300)
Q Consensus       123 ~gEEf-~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~-~~H~~~N---~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~~  197 (300)
                      +..|. +.=+-|..++.+ ||++|+|...|.+|+-.| ..-.|.+   ..+|++..++   .|+.-.-|...+. .+|..
T Consensus        74 eRRElgiINIG~~G~i~v-~g~~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~s---apAH~s~ptk~~~-~~~a~  148 (278)
T COG3717          74 ERRELGIINIGGPGTITV-DGQEYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVS---APAHTSYPTKKVT-LAEAK  148 (278)
T ss_pred             eeeeeeEEeeCCCceEEE-CCEEEEeccccEEEEecCccceEEeccCCCCcceEEEee---ccccccCCccccc-HHHcC
Confidence            33444 455667889999 999999999999999888 5666775   4688998884   3333333444444 44444


Q ss_pred             CcccCC----ceeEEEEee-CCCCCc-ceEEEEEEecCCcc---cCcceeec
Q 022278          198 LLETPG----EVFQLRKLL-PQAVPF-DFNIHIMDFQPGDF---LNVKEVHY  240 (300)
Q Consensus       198 ~~~~~g----~~~~~~~l~-p~~~~~-~~~~~~~tl~PG~~---~p~~~~H~  240 (300)
                      +.....    ...++-+.+ |+-... ...|-...|+||.-   +|. |.|.
T Consensus       149 p~~lG~~~tSN~RTI~kyihpd~~~scQL~mG~T~L~pgsvWNTMP~-H~Hd  199 (278)
T COG3717         149 PVTLGDDATSNRRTINKYIHPDVLESCQLSMGLTMLAPGSVWNTMPC-HVHD  199 (278)
T ss_pred             ccccccccccccceeeeeeccchhhhhhhhhcceeecCCCccccCCc-cccc
Confidence            444321    333555555 766554 47788899999975   775 5665

>PLN02288 mannose-6-phosphate isomerase

Probab=94.27  E-value=0.12  Score=50.90  Aligned_cols=58  Identities=12%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE--EEeccCcEEEeCCCCc
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS--SKLMVDSYTYLPPNFA  160 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~--~~L~~Gds~yfpa~~~  160 (300)
                      ..|....+++.+|.........+-..++|++|++++.. ++.+  ..|++|+++|+|++..
T Consensus       332 ~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~-~~~~~~~~l~~G~~~fv~a~~~  391 (394)
T PLN02288        332 DEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLST-GSSEDGTAAKRGDVFFVPAGTE  391 (394)
T ss_pred             cceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEec-CCccceEEEeceeEEEEeCCCc
Confidence            56888888887775433334678899999999999987 6655  6799999999999765

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=94.16  E-value=0.31  Score=38.50  Aligned_cols=62  Identities=11%  Similarity=0.115  Sum_probs=43.1

Q ss_pred             EEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278          109 ANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  173 (300)
Q Consensus       109 v~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~  173 (300)
                      -.|.||.-. . .-...|..-|++|++++.+ .|  +..+..+|+++-+|++....++-.+++..++
T Consensus        28 GVm~pGeY~-F-~T~~~E~M~vvsG~l~V~l-pg~~ew~~~~aGesF~VpanssF~v~v~~~~~Y~C   91 (94)
T PF06865_consen   28 GVMLPGEYT-F-GTSAPERMEVVSGELEVKL-PGEDEWQTYSAGESFEVPANSSFDVKVKEPTAYLC   91 (94)
T ss_dssp             EEE-SECEE-E-EESS-EEEEEEESEEEEEE-TT-SS-EEEETT-EEEE-TTEEEEEEESS-EEEEE
T ss_pred             EEEeeeEEE-E-cCCCCEEEEEEEeEEEEEc-CCCcccEEeCCCCeEEECCCCeEEEEECcceeeEE
Confidence            345677422 1 2345788899999999999 44  4689999999999999999999877666655

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins

Probab=93.99  E-value=0.0067  Score=40.04  Aligned_cols=40  Identities=15%  Similarity=0.187  Sum_probs=34.3

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCccee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSV   66 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~   66 (300)
                      +|+.++|+++++|.+.+|++|++...|+.     |.+.+|++...
T Consensus        11 ~s~~~la~~~~i~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~   55 (56)
T smart00530       11 LTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDE   55 (56)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCChhh
Confidence            57889999999999999999999987665     88888887654

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=93.96  E-value=0.17  Score=46.94  Aligned_cols=41  Identities=15%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee
Q 022278          124 VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA  165 (300)
Q Consensus       124 gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N  165 (300)
                      .--++++++|.+.+.. +|+++.+.+||.+.++++.+|.+..
T Consensus        71 ~~~l~~~~~G~~~~~~-~g~~~~l~~G~~~l~~~~~p~~~~~  111 (302)
T PRK09685         71 HFFTVFQLSGHAIIEQ-DDRQVQLAAGDITLIDASRPCSIYP  111 (302)
T ss_pred             cEEEEEEecceEEEEE-CCeEEEEcCCCEEEEECCCCcEeec
Confidence            3446678999999999 9999999999999999999999875

>TIGR02607 antidote_HigA addiction module antidote protein, HigA family

Probab=93.96  E-value=0.0056  Score=45.57  Aligned_cols=43  Identities=12%  Similarity=0.084  Sum_probs=37.5

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|++++|+++|+|++.+|++|+|...|+.     |++.+|++...+..
T Consensus        19 ~t~~~lA~~~gis~~tis~~~~g~~~~~~~~~~~l~~~l~v~~~~l~~   66 (78)
T TIGR02607        19 LSIRALAKALGVSRSTLSRIVNGRRGITADMALRLAKALGTSPEFWLN   66 (78)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence            37899999999999999999999988777     88999988776654

Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=93.06  E-value=0.53  Score=40.49  Aligned_cols=77  Identities=6%  Similarity=0.057  Sum_probs=51.1

Q ss_pred             cEEEEEEEEcCCCcCCCCCCC---ce--EEEEEE-ECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEE
Q 022278          103 HFVMYLANMQENARSALPPHD---VE--RFIFVV-QGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE  175 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~---gE--Ef~yVL-eG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~  175 (300)
                      .....+..|.||+.-.+|...   .-  ++..+. .+.+.+.+ +|+++..++|+.++|....+|...| ....|++.+.
T Consensus        79 ~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v-~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L~v  157 (163)
T PF05118_consen   79 LGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV-GGETRHWREGECWVFDDSFEHEVWNNGDEDRVVLIV  157 (163)
T ss_dssp             CEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE-TTEEEB--CTEEEEE-TTS-EEEEESSSS-EEEEEE
T ss_pred             hhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE-CCeEEEeccCcEEEEeCCEEEEEEeCCCCCEEEEEE
Confidence            345678888999877666211   12  334444 36689999 9999999999999999999999999 5567877776


Q ss_pred             eeccc
Q 022278          176 RRYAS  180 (300)
Q Consensus       176 ~~y~~  180 (300)
                      .-..|
T Consensus       158 D~~hP  162 (163)
T PF05118_consen  158 DFWHP  162 (163)
T ss_dssp             EEE-T
T ss_pred             EeecC
Confidence            55443

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=92.98  E-value=0.67  Score=45.62  Aligned_cols=58  Identities=17%  Similarity=0.319  Sum_probs=44.5

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEE
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL  163 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~  163 (300)
                      .|....+++.++ .... ..++-+.++|++|++++.. +++++.|++|+++++|++.....
T Consensus       320 ~F~~~~~~l~~~-~~~~-~~~~~~Illv~~G~~~i~~-~~~~~~l~~G~~~fipa~~~~~~  377 (389)
T PRK15131        320 DFAFSLHDLSDQ-PTTL-SQQSAAILFCVEGEAVLWK-GEQQLTLKPGESAFIAANESPVT  377 (389)
T ss_pred             CcEEEEEEECCc-eEEe-cCCCcEEEEEEcceEEEEe-CCeEEEECCCCEEEEeCCCccEE
Confidence            577777777543 1111 2356689999999999997 88899999999999999876543

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=92.72  E-value=0.8  Score=43.27  Aligned_cols=60  Identities=13%  Similarity=0.315  Sum_probs=46.0

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCc-eEEe
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLR  164 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~-H~~~  164 (300)
                      ..|....+++...  ......++-..++|++|++++.. ++.+..|++|+++++||+.. -.++
T Consensus       233 ~~F~~~~~~~~~~--~~~~~~~~~~il~v~~G~~~i~~-~~~~~~l~~G~~~~ipa~~~~~~i~  293 (302)
T TIGR00218       233 EYFSVYKWDISGK--AEFIQQQSALILSVLEGSGRIKS-GGKTLPLKKGESFFIPAHLGPFTIE  293 (302)
T ss_pred             CCeEEEEEEeCCc--eeeccCCCcEEEEEEcceEEEEE-CCEEEEEecccEEEEccCCccEEEE
Confidence            4677777777533  11223557788999999999998 88999999999999999985 4443

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>COG1476 Predicted transcriptional regulators [Transcription]

Probab=92.52  E-value=0.011  Score=43.94  Aligned_cols=42  Identities=12%  Similarity=0.063  Sum_probs=37.5

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      ||++||++.|+|+--|.++|+|.-.||+     |+..++.+..++|.
T Consensus        16 tQ~elA~~vgVsRQTi~~iEkgky~Psl~La~kia~~f~~~iedIF~   62 (68)
T COG1476          16 TQEELAKLVGVSRQTIIAIEKGKYNPSLELALKIARVFGKTIEDIFQ   62 (68)
T ss_pred             CHHHHHHHcCcCHHHHHHHHcCCCCchHHHHHHHHHHhCCCHHHHHh
Confidence            7899999999999999999999999998     88888877766653

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=92.36  E-value=0.56  Score=39.05  Aligned_cols=54  Identities=17%  Similarity=0.204  Sum_probs=44.5

Q ss_pred             CceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEee
Q 022278          123 DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  177 (300)
Q Consensus       123 ~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~  177 (300)
                      +.=-+.+.++|.+.+.. +|++..+.+|+.+.++++.++.++.....+.+++.=+
T Consensus        54 ~~~~l~~~~~G~~~~~~-~g~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~ip  107 (172)
T PF14525_consen   54 DHYLLVLPLSGSARIEQ-GGREVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRIP  107 (172)
T ss_pred             CEEEEEEEccCCEEEEE-CCEEEEEcCCeEEEEcCCCCEEEEECCCccEEEEEEC
Confidence            34556788999999999 9999999999999999999999987655565555333

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=92.30  E-value=0.37  Score=45.95  Aligned_cols=61  Identities=20%  Similarity=0.260  Sum_probs=39.6

Q ss_pred             ecCCcccCcceeeccceEEEEEEeeEE--EEeC-----------------------CEEEEccCCcEEEeCCCCceeEEe
Q 022278          227 FQPGDFLNVKEVHYNQHGLLLLEGQGI--YRLG-----------------------DSWYPVQAGDVLWMAPFVPQWYAA  281 (300)
Q Consensus       227 l~PG~~~p~~~~H~~eh~~~iL~G~G~--~~~~-----------------------g~~~~v~~GD~i~~~~~~~H~~~n  281 (300)
                      +-|+++-++ --|...|..+|+...|.  -++-                       .....++|||++|+|+|..|.-.+
T Consensus       120 ~tp~g~~g~-~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~  198 (319)
T PF08007_consen  120 LTPPGSQGF-GPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVT  198 (319)
T ss_dssp             EETSSBEES-ECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEE
T ss_pred             ecCCCCCCc-cCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCC
Confidence            457776665 57777788888887772  1121                       236889999999999999999999


Q ss_pred             cCCccEEE
Q 022278          282 LGKTRTRY  289 (300)
Q Consensus       282 ~G~e~~~f  289 (300)
                      .+ ..+.+
T Consensus       199 ~~-~S~hl  205 (319)
T PF08007_consen  199 TD-PSLHL  205 (319)
T ss_dssp             SS--EEEE
T ss_pred             CC-CceEE
Confidence            98 44443

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=92.30  E-value=0.92  Score=44.99  Aligned_cols=66  Identities=15%  Similarity=0.030  Sum_probs=53.0

Q ss_pred             cCCCcC-CCC--CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeec
Q 022278          112 QENARS-ALP--PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRY  178 (300)
Q Consensus       112 ~PG~~~-~~~--~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y  178 (300)
                      .++.+. ...  ..+||+.+|+-+|++.+.- +=-...+++||++.+|.|+.+++.-.+++|.++++.--
T Consensus       133 ~~~~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g  201 (429)
T TIGR01015       133 LCNASMENRAFYNADGDFLIVPQQGALLITT-EFGRLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG  201 (429)
T ss_pred             eCCCCcccceeeccCCCEEEEEEeCcEEEEE-eccceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence            455554 222  6899999999999999986 54467899999999999999999866789988876543

Missing in human disease alkaptonuria.

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=92.30  E-value=0.49  Score=46.98  Aligned_cols=64  Identities=19%  Similarity=0.113  Sum_probs=52.2

Q ss_pred             cCCCcC-CCC--CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEEe
Q 022278          112 QENARS-ALP--PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFER  176 (300)
Q Consensus       112 ~PG~~~-~~~--~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~  176 (300)
                      .++.+. ...  ..+||+.+|+-+|++.+.- +=-...+++||++++|.|+.+++.- ++++|.++++.
T Consensus       139 ~~n~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~  206 (438)
T PRK05341        139 AANRSMQDRYFYNADGELLIVPQQGRLRLAT-ELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVCEN  206 (438)
T ss_pred             eCCCCcccceeecCCCCEEEEEEeCCEEEEE-eccceEecCCCEEEEcCccEEEEecCCCCeeEEEEEe
Confidence            455554 222  6899999999999999986 5446789999999999999999984 77999988864

>PLN02658 homogentisate 1,2-dioxygenase

Probab=92.20  E-value=0.82  Score=45.42  Aligned_cols=65  Identities=15%  Similarity=0.107  Sum_probs=53.4

Q ss_pred             cCCCcCCCC---CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEEee
Q 022278          112 QENARSALP---PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERR  177 (300)
Q Consensus       112 ~PG~~~~~~---~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~  177 (300)
                      .++.+....   ..+||+.+++-+|++.+.- .=-.-.+++||++.+|.|+.+++.= ++++|.++++.-
T Consensus       132 ~~n~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~  200 (435)
T PLN02658        132 VANKSMDDCAFCNADGDFLIVPQQGRLWIKT-ELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF  200 (435)
T ss_pred             eCCCCCccceeecCCCCEEEEEEeCCEEEEE-eccceEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence            455554222   6899999999999999986 5445789999999999999999984 789999988766

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=92.15  E-value=0.16  Score=39.99  Aligned_cols=27  Identities=15%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             EEEEccCCcEEEeCCCCceeEEecCCc
Q 022278          259 SWYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       259 ~~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      ....-+|||+|+++||..|+..|.|+.
T Consensus        81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~  107 (114)
T PF02373_consen   81 YRFVQKPGEFVFIPPGAYHQVFNLGDN  107 (114)
T ss_dssp             EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred             ccceECCCCEEEECCCceEEEEeCCce
Confidence            357789999999999999999999974

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>COG1741 Pirin-related protein [General function prediction only]

Probab=92.09  E-value=0.27  Score=46.15  Aligned_cols=66  Identities=15%  Similarity=0.041  Sum_probs=52.0

Q ss_pred             EEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCC--CCceeEEec--CCccEEE
Q 022278          224 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAP--FVPQWYAAL--GKTRTRY  289 (300)
Q Consensus       224 ~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~--~~~H~~~n~--G~e~~~f  289 (300)
                      --.+.||.-++.|.|-..|-.-|+|+|+...++. |..-.++|||+-||.+  |+-|+=.|.  -++++..
T Consensus        48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~  118 (276)
T COG1741          48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHG  118 (276)
T ss_pred             cccccCCCcCCCCCCCCcEEEEEEEccEEEEeecCCceeeecccceeEEcCCCceeecccCCccCCCccce
Confidence            3349999988887666888788999999999987 5788999999999976  577887775  2335543

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=92.07  E-value=0.44  Score=40.67  Aligned_cols=55  Identities=13%  Similarity=0.239  Sum_probs=34.0

Q ss_pred             cCCcccCcceeeccceEEEEEEeeEEEEe--CC--EEEEccCCcEEEeCCCCceeEEecC
Q 022278          228 QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GD--SWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       228 ~PG~~~p~~~~H~~eh~~~iL~G~G~~~~--~g--~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      -|.....| |-..-||-+|-++|...+.+  +|  +..++++||+.++|+++||+-+-..
T Consensus        41 GPN~R~Dy-Hine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~   99 (151)
T PF06052_consen   41 GPNQRTDY-HINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPA   99 (151)
T ss_dssp             SSB--SSE-EE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred             CCCCCCcc-ccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence            45555555 34455588999999987664  44  6788999999999999999766543

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=91.31  E-value=0.4  Score=41.54  Aligned_cols=48  Identities=13%  Similarity=0.201  Sum_probs=40.1

Q ss_pred             CCCCCCceEEEEEEECEEEEEE--cCCcE--EEeccCcEEEeCCCCceEEee
Q 022278          118 ALPPHDVERFIFVVQGSAMLTN--ASGVS--SKLMVDSYTYLPPNFAHSLRA  165 (300)
Q Consensus       118 ~~~~h~gEEf~yVLeG~v~l~v--~gg~~--~~L~~Gds~yfpa~~~H~~~N  165 (300)
                      +.|.|.-||.-|+++|..-..+  .+++.  .-+++||.+.+|||+-|++.-
T Consensus        87 EEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTt  138 (179)
T KOG2107|consen   87 EEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTT  138 (179)
T ss_pred             HHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeec
Confidence            4457999999999999998877  23443  578999999999999999983

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=91.06  E-value=1.8  Score=35.89  Aligned_cols=42  Identities=21%  Similarity=0.215  Sum_probs=37.8

Q ss_pred             EEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278          244 GLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       244 ~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      ..+.++|.+.+..+|....+.|||+++..++.+..+...++-
T Consensus        58 l~~~~~G~~~~~~~g~~~~~~pg~~~l~d~~~~~~~~~~~~~   99 (172)
T PF14525_consen   58 LVLPLSGSARIEQGGREVELAPGDVVLLDPGQPYRLEFSAGC   99 (172)
T ss_pred             EEEEccCCEEEEECCEEEEEcCCeEEEEcCCCCEEEEECCCc
Confidence            457799999999999999999999999999999999876543

>PRK10072 putative transcriptional regulator; Provisional

Probab=90.48  E-value=0.025  Score=44.87  Aligned_cols=39  Identities=15%  Similarity=0.048  Sum_probs=34.4

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh----hhcccCCccee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRSV   66 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs~   66 (300)
                      |+.++|+++|+|++-+|+.|+|.+.|+.    ++.+|+.++..
T Consensus        48 TQ~elA~~lGvS~~TVs~WE~G~r~P~~~~l~Ll~~L~~~P~~   90 (96)
T PRK10072         48 KIDDFARVLGVSVAMVKEWESRRVKPSSAELKLMRLIQANPAL   90 (96)
T ss_pred             CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhhCHHH
Confidence            5789999999999999999999999997    77888877643

>PRK11396 hypothetical protein; Provisional

Probab=90.38  E-value=6.6  Score=34.98  Aligned_cols=84  Identities=13%  Similarity=0.149  Sum_probs=56.8

Q ss_pred             cceEEEEecCCCCCcEEEE--EEEEcCCCcCCCCCCCceEEEEEEEC-EEEEEEcCC-cEEEeccCcEEEeCCCCceEEe
Q 022278           89 NTLGAYLITPAMGSHFVMY--LANMQENARSALPPHDVERFIFVVQG-SAMLTNASG-VSSKLMVDSYTYLPPNFAHSLR  164 (300)
Q Consensus        89 ~~~~~~L~sp~~g~~f~~~--lv~l~PG~~~~~~~h~gEEf~yVLeG-~v~l~v~gg-~~~~L~~Gds~yfpa~~~H~~~  164 (300)
                      |.+-.+...|.....|...  +.++...|.... -.+.++.+.||+| .++|.. ++ ..+.|++++.+.|+.+..-.-+
T Consensus        19 G~TrEI~~~P~~~~dF~WRiSiA~I~~~GpFS~-FpGidR~i~lL~G~g~~L~~-~~~~~~~l~~~~p~~F~Gd~~v~a~   96 (191)
T PRK11396         19 GETREICTFPPAKRDFYWRASIASIAANGEFSL-FPGMERIVTLLEGGEMFLES-ADRFNHTLKPLQPFAFAADQVVKAK   96 (191)
T ss_pred             eEEEEEEEcCCCCCCceEEEEEEEecCCCCCCC-CCCccEEEEEEECCCEEEee-CCccceecCCCCCeEeCCCCeeEEE
Confidence            3455566667654566554  455554322211 3688999999998 799998 65 4578899999999999888777


Q ss_pred             e-CCe-EEEEEE
Q 022278          165 A-EGS-ATLVVF  174 (300)
Q Consensus       165 N-~~~-a~vl~v  174 (300)
                      . +.+ .+-+-+
T Consensus        97 L~~G~v~~dfNv  108 (191)
T PRK11396         97 LTAGQMSMDFNI  108 (191)
T ss_pred             ECCCCeEEEEEE
Confidence            5 555 343444

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=89.47  E-value=2.6  Score=33.34  Aligned_cols=81  Identities=14%  Similarity=0.078  Sum_probs=52.7

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCE--EEEccCCcEEEeCCCCceeEEe
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS--WYPVQAGDVLWMAPFVPQWYAA  281 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~--~~~v~~GD~i~~~~~~~H~~~n  281 (300)
                      |++..+-+.-.++.. -.  +=.+.||.+.   =.-...|.+-|++|+..+.+.|+  |....+|+..-+|++..=.++.
T Consensus        10 GkV~S~~~~~~dG~~-~T--lGVm~pGeY~---F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v   83 (94)
T PF06865_consen   10 GKVKSITFEFADGSK-KT--LGVMLPGEYT---FGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKV   83 (94)
T ss_dssp             CTEEEEEEEETTSEE-EE--EEEE-SECEE---EEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEE
T ss_pred             CeEEEEEEEcCCCCc-ce--EEEEeeeEEE---EcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEE
Confidence            455555555444221 11  2233588742   22344568999999999999985  9999999999999998888888


Q ss_pred             cCCccEEEEEE
Q 022278          282 LGKTRTRYLLY  292 (300)
Q Consensus       282 ~G~e~~~fi~~  292 (300)
                        +++..|+|.
T Consensus        84 --~~~~~Y~C~   92 (94)
T PF06865_consen   84 --KEPTAYLCS   92 (94)
T ss_dssp             --SS-EEEEEE
T ss_pred             --CcceeeEEE
Confidence              489999985

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=88.98  E-value=2.5  Score=32.46  Aligned_cols=50  Identities=8%  Similarity=0.037  Sum_probs=37.8

Q ss_pred             CCceEEEEEEECEEEEEEcCC------cEEEeccCcEEEeCCCCceEEee-CCeEEE
Q 022278          122 HDVERFIFVVQGSAMLTNASG------VSSKLMVDSYTYLPPNFAHSLRA-EGSATL  171 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~v~gg------~~~~L~~Gds~yfpa~~~H~~~N-~~~a~v  171 (300)
                      .+.-.-+-||+|++++..-++      +...+.+|+...++|...|++.- ..++++
T Consensus        23 ~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f   79 (82)
T PF09313_consen   23 AGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRF   79 (82)
T ss_dssp             TTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EE
T ss_pred             CCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEE
Confidence            566778899999999986233      56799999999999999999996 444554

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=88.98  E-value=1.7  Score=40.81  Aligned_cols=51  Identities=16%  Similarity=0.279  Sum_probs=40.1

Q ss_pred             ceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEec--CCccEEEEEE
Q 022278          242 QHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL--GKTRTRYLLY  292 (300)
Q Consensus       242 eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~--G~e~~~fi~~  292 (300)
                      |=++..|.|+|.+..+|+.+.+.+.|.+|++.|..-..-+.  ...|++|.+-
T Consensus        75 E~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~  127 (276)
T PRK00924         75 ELGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLN  127 (276)
T ss_pred             EEEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence            33678899999999999999999999999999988554442  2356666543

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=88.91  E-value=3.2  Score=36.13  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=47.0

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceE-EEEEEeeEEEE---eCCE----------EEEccCCcEEEeC
Q 022278          207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHG-LLLLEGQGIYR---LGDS----------WYPVQAGDVLWMA  272 (300)
Q Consensus       207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~-~~iL~G~G~~~---~~g~----------~~~v~~GD~i~~~  272 (300)
                      ..|.++-.+.  .+.+-++...||..+|. |-|...++ +.||+|+-.-.   .++.          ...+..|.....+
T Consensus        64 Y~r~ll~~~~--~~el~ll~W~pGq~S~I-HDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~  140 (175)
T PF05995_consen   64 YTRNLLYRDE--RFELWLLCWPPGQRSPI-HDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFD  140 (175)
T ss_dssp             SEEEEEEGGC--T-EEEEEEE-TT-B--E-EE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBT
T ss_pred             CeEEEEecCC--CeEEEEEEeCCCCcCCC-CCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecC
Confidence            3456663333  35566899999999997 67776555 67999987543   3433          3345566666668


Q ss_pred             CCCceeEEecC-CccEE
Q 022278          273 PFVPQWYAALG-KTRTR  288 (300)
Q Consensus       273 ~~~~H~~~n~G-~e~~~  288 (300)
                      ++--|.+.|.+ +++..
T Consensus       141 ~~~iH~v~n~s~~~~av  157 (175)
T PF05995_consen  141 PHGIHRVENPSGDEPAV  157 (175)
T ss_dssp             TTBEEEEEES-SSS-EE
T ss_pred             CCCeEEeccCCCCCCEE
Confidence            88899999886 66543

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.74  E-value=1.7  Score=42.06  Aligned_cols=54  Identities=19%  Similarity=0.110  Sum_probs=46.2

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEE
Q 022278          121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE  175 (300)
Q Consensus       121 ~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~  175 (300)
                      ..+||+.+|+-.|++.+.- +=-...+++||++.+|.|+..+++- +..++..+.+
T Consensus       143 NADge~Livpq~G~l~l~t-e~G~l~v~pgeiavIPRG~~frve~~~~~~rgy~~E  197 (427)
T COG3508         143 NADGELLIVPQQGELRLKT-ELGVLEVEPGEIAVIPRGTTFRVELKDGEARGYGCE  197 (427)
T ss_pred             cCCCCEEEEeecceEEEEE-eeceEEecCCcEEEeeCCceEEEEecCCceEEEEEe
Confidence            5799999999999999986 5557899999999999999999986 5667776654

>PRK04140 hypothetical protein; Provisional

Probab=88.73  E-value=0.066  Score=51.22  Aligned_cols=104  Identities=12%  Similarity=-0.013  Sum_probs=60.7

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeeeeeeEeCCC-CeeeccCCCCCcceEEEEecCCCC
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKRDHALITPE-SHVLSPLPEWTNTLGAYLITPAMG  101 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~~~av~~~e-~~~~~~~p~~~~~~~~~L~sp~~g  101 (300)
                      |+.+||+++|+|++.+|+.|+|...|+.     |+++||++...... . +-... +......++...... -++.+...
T Consensus       141 Sq~eLA~~lGVSr~tIskyE~G~~~Ps~e~~~kLa~~Lgv~l~~~iD-~-l~~~~~~~~~~~~~~~~~~~~-~il~~l~~  217 (317)
T PRK04140        141 SLGELASELGVSRRTISKYENGGMNASIEVAIKLEEILDVPLTKPID-I-LEKVRDDEVTPEDPEEDPFEK-EILNVLTR  217 (317)
T ss_pred             CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCChHHHHH-H-hccccccccccccCCCCHHHH-HHHHHHHH
Confidence            6799999999999999999999999998     89999987554322 1 11111 111111111111101 12222222


Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAML  137 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l  137 (300)
                      ..|+++-+...|.+.-...   .++-.-||.|..+.
T Consensus       218 ~G~~~~~~~~aPf~avs~~---~~e~~~vltG~~~~  250 (317)
T PRK04140        218 LGFDVLPTKKAPFDAVSED---EKDENILLTGISEF  250 (317)
T ss_pred             CCCcEEEeecCchhhhccc---CccceEEEeccccc
Confidence            3477777777777644322   22346688886665

>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine

Probab=87.77  E-value=1.5  Score=39.29  Aligned_cols=70  Identities=21%  Similarity=0.214  Sum_probs=47.7

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEE-EEEeeEEEEe----CC---------EE--E-------EccCCcEEEeCC--
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLL-LLEGQGIYRL----GD---------SW--Y-------PVQAGDVLWMAP--  273 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~-iL~G~G~~~~----~g---------~~--~-------~v~~GD~i~~~~--  273 (300)
                      .|.|.+|-|.||+.||. |-|+..+++- ||.|...++-    +.         ++  .       --.+++..++-|  
T Consensus        43 ~fsi~iF~lp~g~~IPL-HDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~  121 (200)
T PF07847_consen   43 DFSIGIFCLPPGAVIPL-HDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTS  121 (200)
T ss_pred             CcEEEEEEeCCCCEeCC-CCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCC
Confidence            67888999999999998 6777776664 8999887752    10         00  0       112334444433  


Q ss_pred             -CCceeEEecCCccEEEE
Q 022278          274 -FVPQWYAALGKTRTRYL  290 (300)
Q Consensus       274 -~~~H~~~n~G~e~~~fi  290 (300)
                       |--|+|.|.+ +++-||
T Consensus       122 ggNiH~f~a~~-~p~Afl  138 (200)
T PF07847_consen  122 GGNIHEFTALT-GPCAFL  138 (200)
T ss_pred             CCeeEEEEeCC-CCeEEE
Confidence             4689999998 787776

Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process

>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]

Probab=87.69  E-value=1.9  Score=37.44  Aligned_cols=75  Identities=23%  Similarity=0.212  Sum_probs=51.6

Q ss_pred             EEee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeE---EEEeCCE--------EEEccCCcEEEeCCCCc
Q 022278          209 RKLL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQG---IYRLGDS--------WYPVQAGDVLWMAPFVP  276 (300)
Q Consensus       209 ~~l~-p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G---~~~~~g~--------~~~v~~GD~i~~~~~~~  276 (300)
                      +.|+ -++.++ +.+-.+|+.||.-.|. |.|.+---.=||.|.=   +|.++++        ..-..+|.+- +.||.-
T Consensus        62 ~~LLh~d~~gf-ltV~~~t~~PG~~~p~-HnH~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdi  138 (191)
T COG5553          62 ELLLHADPQGF-LTVYHITLSPGVQYPP-HNHLMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDI  138 (191)
T ss_pred             eEEEEEccccc-EEEEEEEeCCCcccCC-cccchheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCe
Confidence            4444 455556 7888999999999997 5665544555666542   4444443        4456778777 888999


Q ss_pred             eeEEecCCcc
Q 022278          277 QWYAALGKTR  286 (300)
Q Consensus       277 H~~~n~G~e~  286 (300)
                      |++.|+|..+
T Consensus       139 hsv~n~~sdr  148 (191)
T COG5553         139 HSVANTGSDR  148 (191)
T ss_pred             eeecccCCCc
Confidence            9999888753

>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins

Probab=87.56  E-value=0.07  Score=35.22  Aligned_cols=39  Identities=15%  Similarity=0.209  Sum_probs=32.4

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcce
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRS   65 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs   65 (300)
                      .|+.++|.++++|.+.++++++|...|+.     |.+.++++..
T Consensus        13 ~s~~~~a~~~~~~~~~v~~~~~g~~~~~~~~~~~i~~~~~~~~~   56 (58)
T cd00093          13 LTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKALGVSLD   56 (58)
T ss_pred             CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCChh
Confidence            46778999999999999999999987776     7777776543

Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.

>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A

Probab=87.53  E-value=0.031  Score=39.83  Aligned_cols=42  Identities=10%  Similarity=0.100  Sum_probs=30.4

Q ss_pred             CCcccccccCCCCcceeeecCCC-CChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPT-LSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~-~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|.+-+|++=++. ..|+.     |+++|++++..++.
T Consensus        12 t~~~La~~~gis~~tl~~~~~~~~~~~~~~~l~~ia~~l~~~~~el~~   59 (63)
T PF13443_consen   12 TQKDLARKTGISRSTLSRILNGKPSNPSLDTLEKIAKALNCSPEELFE   59 (63)
T ss_dssp             -HHHHHHHHT--HHHHHHHHTTT-----HHHHHHHHHHHT--HHHCTE
T ss_pred             CHHHHHHHHCcCHHHHHHHHhcccccccHHHHHHHHHHcCCCHHHHhh
Confidence            78899999999999999999998 67877     99999999988765

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=87.13  E-value=2.1  Score=31.18  Aligned_cols=55  Identities=16%  Similarity=0.044  Sum_probs=40.0

Q ss_pred             EEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcEEEeccCcEEEeCCCCceEEe
Q 022278          109 ANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVSSKLMVDSYTYLPPNFAHSLR  164 (300)
Q Consensus       109 v~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg~~~~L~~Gds~yfpa~~~H~~~  164 (300)
                      ++|.||.........+.+ +-|.+|.+=++. ++.+.|.|.+||++-++++..-.++
T Consensus         2 ~~L~~g~~~~lr~~~~~~-l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~   57 (63)
T PF11142_consen    2 FELAPGETLSLRAAAGQR-LRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLS   57 (63)
T ss_pred             EEeCCCceEEeEcCCCcE-EEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEE
Confidence            456777655444344444 899999999988 2245699999999999998765554

>PRK10579 hypothetical protein; Provisional

Probab=87.01  E-value=4.1  Score=32.15  Aligned_cols=80  Identities=13%  Similarity=0.164  Sum_probs=56.9

Q ss_pred             ceeEEEEeeCCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC--EEEEccCCcEEEeCCCCceeEE
Q 022278          204 EVFQLRKLLPQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYA  280 (300)
Q Consensus       204 ~~~~~~~l~p~~~~-~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--~~~~v~~GD~i~~~~~~~H~~~  280 (300)
                      |++..+-+.-.++. +..-  +  +.||.+. +  .-...|.+=|++|+..+.|.|  +|...++|+..-+|++..=.++
T Consensus        10 Gkv~S~~~~~~dG~~kTlG--V--m~pGey~-F--~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~   82 (94)
T PRK10579         10 GKVKSIGFDSSSTGRASVG--V--MAEGEYT-F--STAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQ   82 (94)
T ss_pred             CeEEEEEEEcCCCCeeEEE--E--EeeeEEE-E--cCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEE
Confidence            45555555544432 2221  2  2366632 1  223446888999999999998  7999999999999999988888


Q ss_pred             ecCCccEEEEEE
Q 022278          281 ALGKTRTRYLLY  292 (300)
Q Consensus       281 n~G~e~~~fi~~  292 (300)
                      .  +++..|+|.
T Consensus        83 v--~~~t~Y~C~   92 (94)
T PRK10579         83 V--AEPTSYLCR   92 (94)
T ss_pred             E--CcceeeEEE
Confidence            8  478999985

>PRK02866 cyanate hydratase; Validated

Probab=86.83  E-value=0.099  Score=44.55  Aligned_cols=42  Identities=10%  Similarity=0.016  Sum_probs=37.3

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK   68 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~   68 (300)
                      .|.++||+++|+|+.++.++++|+.++|.     |.++|+++.....
T Consensus        19 LTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~LgL~~~~~~   65 (147)
T PRK02866         19 LTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELLGLDEDAVA   65 (147)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence            36799999999999999999999999998     8999988877554

>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family

Probab=86.64  E-value=0.064  Score=43.60  Aligned_cols=39  Identities=13%  Similarity=0.077  Sum_probs=32.9

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh----hhcccCCccee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRSV   66 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs~   66 (300)
                      |+.++|+++|+|++.+|+.|+|...|+.    ++..|++++..
T Consensus        80 tq~~lA~~lg~~~~tis~~e~g~~~p~~~~~~l~~~l~~~p~~  122 (127)
T TIGR03830        80 SQREAAELLGGGVNAFSRYERGEVRPSKALDKLLRLLDKHPEL  122 (127)
T ss_pred             CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHChHH
Confidence            7899999999999999999999998875    66666666543

This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.

>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A

Probab=86.61  E-value=0.072  Score=40.40  Aligned_cols=40  Identities=15%  Similarity=0.068  Sum_probs=28.4

Q ss_pred             cCCcccccccCCCCcceeeecCC-CCChhh-----hhcccCCccee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNP-TLSPSH-----LQDLPGFTRSV   66 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~-~~sps~-----I~~~lg~trs~   66 (300)
                      =|+.++|+++|.|++-+|++||| ....|+     ++++||.....
T Consensus        32 ltQ~e~A~~lgisq~~vS~l~~g~~~~~sl~~L~~~l~aLG~~v~i   77 (80)
T PF13744_consen   32 LTQAELAERLGISQPRVSRLENGKIDDFSLDTLLRYLEALGGRVEI   77 (80)
T ss_dssp             --HHHHHHHHTS-HHHHHHHHTT-GCC--HHHHHHHHHHTTEEEEE
T ss_pred             CCHHHHHHHHCCChhHHHHHHcCcccCCCHHHHHHHHHHcCCeEEE
Confidence            37889999999999999999996 456665     77777765543

>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.24  E-value=2.6  Score=32.66  Aligned_cols=47  Identities=15%  Similarity=0.102  Sum_probs=37.7

Q ss_pred             eEEEEEEECEEEEEE-cCCcEEEeccCcEEEeCCCCceEEeeCCeEEE
Q 022278          125 ERFIFVVQGSAMLTN-ASGVSSKLMVDSYTYLPPNFAHSLRAEGSATL  171 (300)
Q Consensus       125 EEf~yVLeG~v~l~v-~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~v  171 (300)
                      -|..-|+.|.+++.+ ++++..+..+|+.+.+|++....++-.++...
T Consensus        42 ~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaeat~Y   89 (94)
T COG3123          42 PEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEATSY   89 (94)
T ss_pred             ceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeeeeeh
Confidence            456779999999998 34567999999999999999998885444433

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=86.19  E-value=2.9  Score=36.66  Aligned_cols=58  Identities=16%  Similarity=0.245  Sum_probs=40.4

Q ss_pred             CCcccCcceeecc-ceEEEEEEeeEEEEe-----C----CEEEEccCC----cEEEeCCCCceeEEecCCcc
Q 022278          229 PGDFLNVKEVHYN-QHGLLLLEGQGIYRL-----G----DSWYPVQAG----DVLWMAPFVPQWYAALGKTR  286 (300)
Q Consensus       229 PG~~~p~~~~H~~-eh~~~iL~G~G~~~~-----~----g~~~~v~~G----D~i~~~~~~~H~~~n~G~e~  286 (300)
                      ||.-=+.|-|+.. ..-..++.|+.....     |    |+|..+.-+    -.+|+|+|+-|+|+|+|++.
T Consensus        54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~  125 (173)
T COG1898          54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA  125 (173)
T ss_pred             CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce
Confidence            6666555444444 466788899985442     2    245555444    36999999999999999987

>TIGR00673 cynS cyanate hydratase

Probab=86.17  E-value=0.072  Score=45.52  Aligned_cols=52  Identities=6%  Similarity=-0.054  Sum_probs=43.0

Q ss_pred             eeccccCCCccCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           17 VTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        17 ~~~~~~~~~~~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      +..++..-| .|.++||+++|+|+-|+.++++|+.++|.     |+++||++-..++.
T Consensus        13 Ll~AK~~KG-LTwe~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kla~lLgL~~e~~~~   69 (150)
T TIGR00673        13 LLESKKKKG-LTFADIADGLGLAEVFVAAALYGQAAAPADEARLVGAKLDLDEDSILE   69 (150)
T ss_pred             HHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHHHHHhCcCHHHHHH
Confidence            333444333 48899999999999999999999999998     99999998887765

Alternate names include cyanate lyase, cyanase and cyanate hydrolase.

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=85.63  E-value=0.85  Score=40.57  Aligned_cols=27  Identities=22%  Similarity=0.207  Sum_probs=20.3

Q ss_pred             EEEEccCCcEEEeCCCCceeEEecCCc
Q 022278          259 SWYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       259 ~~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      -...++|||++|||+|-.|+.+|..++
T Consensus       209 ~~~~l~pGD~LfiP~gWwH~V~~~~~~  235 (251)
T PF13621_consen  209 YEVVLEPGDVLFIPPGWWHQVENLSDD  235 (251)
T ss_dssp             EEEEEETT-EEEE-TT-EEEEEESTTS
T ss_pred             eEEEECCCeEEEECCCCeEEEEEcCCC
Confidence            356899999999999999999999333

...

>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12

Probab=85.51  E-value=0.66  Score=40.88  Aligned_cols=51  Identities=16%  Similarity=0.277  Sum_probs=35.6

Q ss_pred             CCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEE
Q 022278          122 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  175 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~  175 (300)
                      ....-++|+++|++++.. +++.+.|.+||.+.+..  ++.+.-....+++||+
T Consensus       133 ~~~~~l~~~~~G~~~i~~-~~~~~~L~~~d~l~~~~--~~~~~l~~~g~ll~v~  183 (184)
T PF05962_consen  133 AASTVLVYVLEGAWSITE-GGNCISLSAGDLLLIDD--EEDLPLTGDGQLLWVS  183 (184)
T ss_dssp             --SEEEEEESSS-EEECC-CEEEEEE-TT-EEEEES--EECEEEEEECCEEEEE
T ss_pred             CCCEEEEEEeeCcEEEec-CCCceEcCCCCEEEEeC--CCceEecCCeeEEEEe
Confidence            456778999999999886 77899999999999987  3333225567777774

HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=85.08  E-value=0.14  Score=44.43  Aligned_cols=34  Identities=12%  Similarity=0.214  Sum_probs=30.3

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhccc
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLP   60 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~l   60 (300)
                      -||.+||+|+|.|++||-.+|-|..-|.-     |+++|
T Consensus        19 itQ~dLA~~aGVSQ~~IArlE~G~vdPrlSt~k~Il~aL   57 (187)
T COG3620          19 ITQKDLARRAGVSQPYIARLEAGKVDPRLSTVKRILEAL   57 (187)
T ss_pred             CCHHHHHHHcCccHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence            48899999999999999999999999976     66665

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=84.74  E-value=6  Score=34.69  Aligned_cols=64  Identities=16%  Similarity=0.236  Sum_probs=42.7

Q ss_pred             cCCcccCccee--eccceEEEEEEeeEEEEe-C--------CEEEEccC----CcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          228 QPGDFLNVKEV--HYNQHGLLLLEGQGIYRL-G--------DSWYPVQA----GDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       228 ~PG~~~p~~~~--H~~eh~~~iL~G~G~~~~-~--------g~~~~v~~----GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      .+|.-=+.|-+  +.+...+.++.|+..-.+ |        |+|..+.-    +-.+|+|+|+-|+|.+.+++ ..++|.
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~  130 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK  130 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence            55665555433  346678899999875432 2        45555333    44999999999999999865 444443

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>TIGR01321 TrpR trp operon repressor, proteobacterial

Probab=83.89  E-value=0.21  Score=39.39  Aligned_cols=32  Identities=19%  Similarity=0.109  Sum_probs=28.9

Q ss_pred             CCccCCcccccccCCCCcceeeecCCCC--Chhh
Q 022278           24 GGFCSAPSILDRETSSKPMYWKVTNPTL--SPSH   55 (300)
Q Consensus        24 ~~~~~~~~~a~r~~lsk~~~Sqver~~~--sps~   55 (300)
                      .+=+|+.+||+++|.|+.+||-++|++.  .|.+
T Consensus        53 ~~~~tQrEIa~~lGiS~atIsR~sn~lk~~~~~~   86 (94)
T TIGR01321        53 NGNMSQREIASKLGVSIATITRGSNNLKTMDPNF   86 (94)
T ss_pred             hCCCCHHHHHHHhCCChhhhhHHHhhcccCCHHH
Confidence            4668999999999999999999999999  7773

This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.

>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators

Probab=82.21  E-value=0.28  Score=33.34  Aligned_cols=24  Identities=21%  Similarity=0.018  Sum_probs=21.4

Q ss_pred             ccccccCCCCcceeeecCCCCChh
Q 022278           31 SILDRETSSKPMYWKVTNPTLSPS   54 (300)
Q Consensus        31 ~~a~r~~lsk~~~Sqver~~~sps   54 (300)
                      +||+++|+|++-+|+++||...++
T Consensus         2 ~lA~~~gvs~~tvs~~l~g~~~vs   25 (52)
T cd01392           2 DIARAAGVSVATVSRVLNGKPRVS   25 (52)
T ss_pred             cHHHHHCcCHHHHHHHHcCCCCCC
Confidence            689999999999999999996544

HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=80.92  E-value=6.2  Score=34.60  Aligned_cols=68  Identities=19%  Similarity=0.379  Sum_probs=45.7

Q ss_pred             CCCcCCCC-CCC-ceEEEEEEECEEEEEEc----CC----c--EEEeccC--cEEEeCCCCceEEee--CCeEEEEEEEe
Q 022278          113 ENARSALP-PHD-VERFIFVVQGSAMLTNA----SG----V--SSKLMVD--SYTYLPPNFAHSLRA--EGSATLVVFER  176 (300)
Q Consensus       113 PG~~~~~~-~h~-gEEf~yVLeG~v~l~v~----gg----~--~~~L~~G--ds~yfpa~~~H~~~N--~~~a~vl~v~~  176 (300)
                      ||---+.| .+. ..+++.|+.|++-..+-    |.    +  ...|.+.  -.+|+|+|..|.+.|  ++..-++++..
T Consensus        54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~~  133 (173)
T COG1898          54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVTE  133 (173)
T ss_pred             CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEecc
Confidence            44333555 333 47899999999866441    22    1  2345544  689999999999998  45566777777


Q ss_pred             eccc
Q 022278          177 RYAS  180 (300)
Q Consensus       177 ~y~~  180 (300)
                      .|.|
T Consensus       134 ~Y~p  137 (173)
T COG1898         134 EYDP  137 (173)
T ss_pred             eeCc
Confidence            8876

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=80.80  E-value=11  Score=35.82  Aligned_cols=63  Identities=16%  Similarity=0.099  Sum_probs=39.9

Q ss_pred             EEEEEEEcCCCc--CCCCCCCceEEEEEEECEEEEEEcC----------------------CcEEEeccCcEEEeCCCCc
Q 022278          105 VMYLANMQENAR--SALPPHDVERFIFVVQGSAMLTNAS----------------------GVSSKLMVDSYTYLPPNFA  160 (300)
Q Consensus       105 ~~~lv~l~PG~~--~~~~~h~gEEf~yVLeG~v~l~v~g----------------------g~~~~L~~Gds~yfpa~~~  160 (300)
                      ...-+.+.|+++  ...|....+-|+.=++|+=...+.+                      ..+++|++||.+|+|+|..
T Consensus       114 ~~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~  193 (319)
T PF08007_consen  114 VGANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWW  193 (319)
T ss_dssp             EEEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-E
T ss_pred             cceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCcc
Confidence            334445566663  3455456788888888987766621                      1258999999999999999


Q ss_pred             eEEeeCC
Q 022278          161 HSLRAEG  167 (300)
Q Consensus       161 H~~~N~~  167 (300)
                      |.-.+.+
T Consensus       194 H~~~~~~  200 (319)
T PF08007_consen  194 HQAVTTD  200 (319)
T ss_dssp             EEEEESS
T ss_pred             CCCCCCC
Confidence            9999744

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=80.67  E-value=11  Score=33.00  Aligned_cols=57  Identities=18%  Similarity=0.280  Sum_probs=37.6

Q ss_pred             cCCcccCcceeecc----ceEEEEEEeeEEEE-eC--------CEEEEc--cCCc--EEEeCCCCceeEEecCCc
Q 022278          228 QPGDFLNVKEVHYN----QHGLLLLEGQGIYR-LG--------DSWYPV--QAGD--VLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       228 ~PG~~~p~~~~H~~----eh~~~iL~G~G~~~-~~--------g~~~~v--~~GD--~i~~~~~~~H~~~n~G~e  285 (300)
                      .+|.-=+. |-|..    ...+.++.|+.... +|        |+|..+  .+++  .+|+|+|+-|+|.+.+++
T Consensus        51 ~~gvlRGl-H~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~  124 (176)
T PF00908_consen   51 KKGVLRGL-HYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD  124 (176)
T ss_dssp             ETTBEEEE-EEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred             cccEEEEE-EEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence            44665554 33333    35578999987543 23        677766  4444  799999999999999875

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=80.55  E-value=11  Score=29.03  Aligned_cols=45  Identities=22%  Similarity=0.239  Sum_probs=35.3

Q ss_pred             EEEEEEeeEEEE-eCC------EEEEccCCcEEEeCCCCceeEEecCCccEEE
Q 022278          244 GLLLLEGQGIYR-LGD------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRY  289 (300)
Q Consensus       244 ~~~iL~G~G~~~-~~g------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~f  289 (300)
                      -+-||+|+..|+ +++      +..-..+|+..+++|...|-++..++ |++|
T Consensus        28 ~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~-D~~f   79 (82)
T PF09313_consen   28 KLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD-DLRF   79 (82)
T ss_dssp             EEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST-T-EE
T ss_pred             EEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC-CEEE
Confidence            578999999998 443      67889999999999999999999975 4444

; PDB: 3BB6_C 3M70_A 3DL3_I.

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=80.55  E-value=5.8  Score=34.78  Aligned_cols=70  Identities=19%  Similarity=0.288  Sum_probs=46.6

Q ss_pred             cCCCcCCCC-C--CCceEEEEEEECEEEEEEcC--------Cc--EEEecc--CcEEEeCCCCceEEee-CCeEEEEEE-
Q 022278          112 QENARSALP-P--HDVERFIFVVQGSAMLTNAS--------GV--SSKLMV--DSYTYLPPNFAHSLRA-EGSATLVVF-  174 (300)
Q Consensus       112 ~PG~~~~~~-~--h~gEEf~yVLeG~v~l~v~g--------g~--~~~L~~--Gds~yfpa~~~H~~~N-~~~a~vl~v-  174 (300)
                      .+|--.+.| .  +....+++|+.|++...+-|        |+  ...|.+  +-.+|+|+|..|.+.+ .+.+.++.. 
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~  131 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC  131 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence            444333445 2  45789999999998765412        12  356666  5599999999999998 555665554 


Q ss_pred             Eeecccc
Q 022278          175 ERRYASL  181 (300)
Q Consensus       175 ~~~y~~~  181 (300)
                      ...|.|.
T Consensus       132 ~~~y~p~  138 (176)
T TIGR01221       132 TDYYAPE  138 (176)
T ss_pred             CCCcCcc
Confidence            5666653

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
4e2q_A	266	Crystal Structure Of (S)-Ureidoglycine Aminohydrola		1e-128
1sfn_A	246	Crystal Structure Of Protein Dr1152 From Deinococcu		6e-43
1sef_A	274	Crystal Structure Of Cupin Domain Protein Ef2996 Fr		4e-29
1rc6_A	261	Crystal Structure Of Protein Ylba From E. Coli, Pfa		2e-24
1sq4_A	278	Crystal Structure Of The Putative Glyoxylate Induce		1e-23

>pdb|4E2Q|A Chain A, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana Length = 266

Iteration: 1
 Score =  454 bits (1168), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/262 (82%), Positives = 231/262 (88%)
Query: 39  SKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITP 98
           + P+YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLITP
Sbjct: 5   TNPIYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITP 64
Query: 99  AMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN 158
           A GSHFVMYLA M+E + S LPP D+ER IFVV+G+  LTN S  S KL VDSY YLPPN
Sbjct: 65  ATGSHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPPN 124
Query: 159 FAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPF 218
           F HSL    SATLVVFERRY  L +H TE IVGSTDKQPLLETPGEVF+LRKLLP +V +
Sbjct: 125 FHHSLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAY 184
Query: 219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW 278
           DFNIH MDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQW
Sbjct: 185 DFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQW 244
Query: 279 YAALGKTRTRYLLYKDVNRNPL 300
           YAALGKTR+RYLLYKDVNRNPL
Sbjct: 245 YAALGKTRSRYLLYKDVNRNPL 266

>pdb|1SFN|A Chain A, Crystal Structure Of Protein Dr1152 From Deinococcus Radiodurans R1, Pfam Duf861 Length = 246

Iteration: 1
 Score =  171 bits (432), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 98/248 (39%), Positives = 137/248 (55%), Gaps = 15/248 (6%)
Query: 61  GFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITP--AMGSHFVMYLANMQENARSA 118
           G TRS     HA+ITPE+ V + L EW  +     I P   +G+ FV + A M   A++ 
Sbjct: 5   GQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQAT 64
Query: 119 LPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRY 178
              +  +RF FV+ G   +    G +  L    Y YLP    H L A+  A + VFE+ Y
Sbjct: 65  ESVY--QRFAFVLSGEVDVA-VGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPY 121
Query: 179 ASLENHITEQIVGSTDKQPLLETPGEVFQ------LRKLLPQAVPFDFNIHIMDFQPGDF 232
            ++E      +    ++    E PG  F+       RKLLP    FDF +  M F PG  
Sbjct: 122 QTVEGVQAPGVYWGNER----ENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGAS 177
Query: 233 LNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 292
           L   EVHY +HGLL+LEG+G+Y+L +++YPV AGD++WM    PQWY ALG+  ++YLLY
Sbjct: 178 LPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLY 237
Query: 293 KDVNRNPL 300
           KD+NR+PL
Sbjct: 238 KDMNRHPL 245

>pdb|1SEF|A Chain A, Crystal Structure Of Cupin Domain Protein Ef2996 From Enterococcus Faecalis Length = 274

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 8/244 (3%)
Query: 63  TRSVYKRDHALITP-ESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENAR--SAL 119
           +R+V K+D+  I P +  V + +P + N   + L +P +G+ FV Y+A   +N +  +  
Sbjct: 20  SRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGF 79
Query: 120 PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR--AEGSATLVVFERR 177
               ++  ++V+ G   +++    + +L    Y Y  P     L    E    + ++++R
Sbjct: 80  GGDGIQTLVYVIDGRLRVSDGQ-ETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKR 138
Query: 178 YASLENHITEQIVGST-DKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 236
           Y  L  H   ++VGS  D+QP          L  LLP+   FD N+HI+ F+PG      
Sbjct: 139 YQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYI 198
Query: 237 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR-TRYLLYKDV 295
           E H  +HG  L+ GQG+Y L + WYPV+ GD ++M+ +VPQ   A+G+     Y+  KD 
Sbjct: 199 ETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDA 258
Query: 296 NRNP 299
           NR P
Sbjct: 259 NREP 262

>pdb|1RC6|A Chain A, Crystal Structure Of Protein Ylba From E. Coli, Pfam Duf861 Length = 261

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 10/244 (4%)
Query: 63  TRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPP 121
            R++ K  + AL+TP+  V + +P + N     L TP +G+ FV YL  + +N  +    
Sbjct: 17  NRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGF 76
Query: 122 HD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL---RAEGSATLVVFER 176
               +E F++V+ G+ +   A G +  L    Y Y PP    +    +AE S  + +++R
Sbjct: 77  GGEGIETFLYVISGN-ITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDS-QIFLYKR 134
Query: 177 RYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV 235
           RY  +E +    + G+  +   +   G +   L   LP+ + FD N+HI+ F PG     
Sbjct: 135 RYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGY 194
Query: 236 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RYLLYKD 294
            E H  +HG  +L GQG+Y L ++W PV+ GD ++M  +  Q    +G+     Y+  KD
Sbjct: 195 IETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKD 254
Query: 295 VNRN 298
            NR+
Sbjct: 255 CNRD 258

>pdb|1SQ4|A Chain A, Crystal Structure Of The Putative Glyoxylate Induced Protein From Pseudomonas Aeruginosa, Northeast Structural Genomics Target Par14 Length = 278

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 106/229 (46%), Gaps = 11/229 (4%)
Query: 80  VLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALPPHD--VERFIFVVQGSA 135
           V S LP W N     +  P  G    F  Y+  +  N  S  P  D   E  +FVV+G  
Sbjct: 42  VTSHLPFWDNXRXWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGEL 101
Query: 136 MLTNASGVSSKLMVDSYTYLPPNFAHSLR-AEGSATLVVFERRYASLENHI---TEQIVG 191
            LT   G         Y ++PP   + +R   G  T   + R++    + +      +  
Sbjct: 102 SLT-LQGQVHAXQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTN 160
Query: 192 STDKQPLL--ETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLE 249
             D QPL+  +T G     R +       D +++I++F+PG  +   E H  +HGL +LE
Sbjct: 161 EQDIQPLVXPDTEGRWSTTRFVDXSDXRHDXHVNIVNFEPGGVIPFAETHVXEHGLYVLE 220
Query: 250 GQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRN 298
           G+ +YRL   W  V+AGD  W+  F PQ   + G  R RYLLYKDVNR+
Sbjct: 221 GKAVYRLNQDWVEVEAGDFXWLRAFCPQACYSGGPGRFRYLLYKDVNRH 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	1e-113
1sfn_A	246	Conserved hypothetical protein; structural genomic	7e-89
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	1e-83
1sef_A	274	Conserved hypothetical protein; structural genomic	5e-83
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	2e-74
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	7e-04
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	7e-12
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	3e-11
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	5e-09
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	9e-08
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	2e-06
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	5e-07
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	1e-06
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	2e-05
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	4e-06
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	5e-06
1v70_A	105	Probable antibiotics synthesis protein; structural	9e-06
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	3e-05
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	7e-05
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	3e-04
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	4e-04
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	8e-04
3h8u_A	125	Uncharacterized conserved protein with double-STR	8e-04

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A Length = 266

 Score =  326 bits (836), Expect = e-113
 Identities = 215/263 (81%), Positives = 231/263 (87%)

Query: 38  SSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLIT 97
            + P+YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLIT
Sbjct: 4   KTNPIYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLIT 63

Query: 98  PAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPP 157
           PA GSHFVMYLA M+E + S LPP D+ER IFVV+G+  LTN S  S KL VDSY YLPP
Sbjct: 64  PATGSHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPP 123

Query: 158 NFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVP 217
           NF HSL    SATLVVFERRY  L +H TE IVGSTDKQPLLETPGEVF+LRKLLP +V 
Sbjct: 124 NFHHSLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVA 183

Query: 218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ 277
           +DFNIH MDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQ
Sbjct: 184 YDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQ 243

Query: 278 WYAALGKTRTRYLLYKDVNRNPL 300
           WYAALGKTR+RYLLYKDVNRNPL
Sbjct: 244 WYAALGKTRSRYLLYKDVNRNPL 266

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11 Length = 246

 Score =  264 bits (676), Expect = 7e-89
 Identities = 97/244 (39%), Positives = 134/244 (54%), Gaps = 7/244 (2%)

Query: 61  GFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITP--AMGSHFVMYLANMQENARSA 118
           G TRS     HA+ITPE+ V + L EW  +     I P   +G+ FV + A M   A++ 
Sbjct: 5   GQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQA- 63

Query: 119 LPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRY 178
                 +RF FV+ G   +    G +  L    Y YLP    H L A+  A + VFE+ Y
Sbjct: 64  -TESVYQRFAFVLSGEVDVAVG-GETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPY 121

Query: 179 ASLENHITEQ-IVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 236
            ++E         G+  + P     G +    RKLLP    FDF +  M F PG  L   
Sbjct: 122 QTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYA 181

Query: 237 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN 296
           EVHY +HGLL+LEG+G+Y+L +++YPV AGD++WM    PQWY ALG+  ++YLLYKD+N
Sbjct: 182 EVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMN 241

Query: 297 RNPL 300
           R+PL
Sbjct: 242 RHPL 245

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11 Length = 261

 Score =  251 bits (642), Expect = 1e-83
 Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 54  SHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQE 113
            + +DL      V   + AL+TP+  V + +P + N     L TP +G+ FV YL  + +
Sbjct: 9   GYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQ 68

Query: 114 NARSALPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS--A 169
           N  +        +E F++V+ G+       G +  L    Y Y PP    +     +  +
Sbjct: 69  NGGNQQGFGGEGIETFLYVISGNITAKAE-GKTFALSEGGYLYCPPGSLMTFVNAQAEDS 127

Query: 170 TLVVFERRYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQ 228
            + +++RRY  +E +    + G+  +   +   G +   L   LP+ + FD N+HI+ F 
Sbjct: 128 QIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFA 187

Query: 229 PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT- 287
           PG      E H  +HG  +L GQG+Y L ++W PV+ GD ++M  +  Q    +G+    
Sbjct: 188 PGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAF 247

Query: 288 RYLLYKDVNRNP 299
            Y+  KD NR+ 
Sbjct: 248 SYIYSKDCNRDV 259

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11 Length = 274

 Score =  250 bits (639), Expect = 5e-83
 Identities = 78/268 (29%), Positives = 128/268 (47%), Gaps = 14/268 (5%)

Query: 39  SKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRD-HALITPESHVLSPLPEWTNTLGAYLIT 97
           S   Y    N  +     Q     +R+V K+D +A+I  +  V + +P + N   + L +
Sbjct: 2   SLMGYK---NNRVGY---QKELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGS 55

Query: 98  PAMGSHFVMYLANMQENARS--ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYL 155
           P +G+ FV Y+A   +N +         ++  ++V+ G   +++    + +L    Y Y 
Sbjct: 56  PKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDG-QETHELEAGGYAYF 114

Query: 156 PPNFAHSLRAEGS--ATLVVFERRYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLL 212
            P     L         + ++++RY  L  H   ++VGS   Q   E  G     L  LL
Sbjct: 115 TPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLL 174

Query: 213 PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMA 272
           P+   FD N+HI+ F+PG      E H  +HG  L+ GQG+Y L + WYPV+ GD ++M+
Sbjct: 175 PKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMS 234

Query: 273 PFVPQWYAALGKTRT-RYLLYKDVNRNP 299
            +VPQ   A+G+     Y+  KD NR P
Sbjct: 235 AYVPQAAYAVGREEPLMYVYSKDANREP 262

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11 Length = 278

 Score =  228 bits (583), Expect = 2e-74
 Identities = 71/256 (27%), Positives = 112/256 (43%), Gaps = 14/256 (5%)

Query: 57  QDLPGFTRSVYKRDHALITP---ESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANM 111
           Q      R+++   +A+I        V S LP W N     +  P  G    F  Y+  +
Sbjct: 16  QTELLTDRAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYIVEL 75

Query: 112 QENARSALPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS- 168
             N  S  P  D   E  +FVV+G   LT   G    +    Y ++PP   + +R     
Sbjct: 76  APNGGSDKPEQDPNAEAVLFVVEGELSLTLQ-GQVHAMQPGGYAFIPPGADYKVRNTTGQ 134

Query: 169 -ATLVVFERRYASLENHITEQIVGSTD----KQPLLETPGEVFQLRKLLPQAVPFDFNIH 223
                   + Y  ++     +   + +       + +T G     R +    +  D +++
Sbjct: 135 HTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEGRWSTTRFVDMSDMRHDMHVN 194

Query: 224 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG 283
           I++F+PG  +   E H  +HGL +LEG+ +YRL   W  V+AGD +W+  F PQ   + G
Sbjct: 195 IVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGG 254

Query: 284 KTRTRYLLYKDVNRNP 299
             R RYLLYKDVNR+ 
Sbjct: 255 PGRFRYLLYKDVNRHM 270

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11 Length = 278

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 149 VDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQL 208
           +   +Y  P+  H  + E      +F   YA +   +   IV  T   P  +        
Sbjct: 1   MSKSSYYAPHGGHPAQTELLTDRAMFTEAYAVIPKGVMRDIV--TSHLPFWDNMRMWVIA 58

Query: 209 RKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGDSWYPVQAGD 267
           R L   A  F    +I++  P    +  E   N +  L ++EG+    L    + +Q G 
Sbjct: 59  RPLSGFAETFS--QYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAMQPGG 116

Query: 268 VLWMAPFVPQWYAALGKTRTRYLLYK 293
             ++ P             TR+   +
Sbjct: 117 YAFIPPGADYKVRNTTGQHTRFHWIR 142

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Length = 166

 Score = 61.5 bits (149), Expect = 7e-12
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 194 DKQPLLETPGEVFQ--LRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ 251
           D     E     F+   R++L         +   +  PG      E H + HG+++L+G+
Sbjct: 25  DLLAYKEEGSAPFRSVTRQVLFSGNGLTGELRYFEVGPGGHST-LERHQHAHGVMILKGR 83

Query: 252 GIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRN 298
           G   +G +   V   D++ +  +    + A       +L   +  R+
Sbjct: 84  GHAMVGRAVSAVAPYDLVTIPGWSWHQFRAPADEALGFLCMVNAERD 130

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Length = 156

 Score = 59.6 bits (144), Expect = 3e-11
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 209 RKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDV 268
           R+LL             +   G +    E H + H +++  G G   +G++   V  GD+
Sbjct: 33  RQLLFADPNLACEWRYFEVDEGGYST-LERHAHVHAVMIHRGHGQCLVGETISDVAQGDL 91

Query: 269 LWMAPFVPQWYAALGKTRTRYLLYKDVNRN 298
           +++ P     + A       +L   +  R+
Sbjct: 92  VFIPPMTWHQFRANRGDCLGFLCVVNAARD 121

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Length = 227

 Score = 54.5 bits (131), Expect = 5e-09
 Identities = 27/175 (15%), Positives = 65/175 (37%), Gaps = 12/175 (6%)

Query: 122 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERRYAS 180
               R+ +   G+  +         +    +  +  N  +S+ A +    + + E+    
Sbjct: 55  MLGNRYYYCFNGNGEIF-IENNKKTISNGDFLEITANHNYSIEARDNLKLIEIGEKIGDG 113

Query: 181 LENHITEQIVGSTDKQPLLE----TPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 236
              + T +++ S     L E      G++   + L+ +    +  + IM F  G+ L+  
Sbjct: 114 NMENKTLKMLESASAFNLAEVVEYQEGKIVS-KNLVAKP---NLVMTIMSFWKGESLD-P 168

Query: 237 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291
                   + +L+G+G Y +    + V+ G+   +   +P    A  +   + LL
Sbjct: 169 HKAPGDALVTVLDGEGKYYVDGKPFIVKKGESAVLPANIPHAVEAETE-NFKMLL 222

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 49.0 bits (117), Expect = 9e-08
 Identities = 15/112 (13%), Positives = 40/112 (35%), Gaps = 4/112 (3%)

Query: 182 ENHITEQIVGSTDKQPLLETPGEVF---QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEV 238
            +H    I+         +   +     + R L+      +F + +   +PG  ++ +  
Sbjct: 7   HHHHHHMILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLID-RHS 65

Query: 239 HYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 290
           H  +H + +L+G+           V+ G  +++ P     +     +   +L
Sbjct: 66  HPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFL 117

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 95  LITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY 154
           LI      +FVM L  ++         H  E  IFV++G   +         +    Y +
Sbjct: 39  LIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK-EQGEETVEEGFYIF 97

Query: 155 LPPNFAHSLRAEGSATLVVF 174
           + PN  H  R +  + +   
Sbjct: 98  VEPNEIHGFRNDTDSEVEFL 117

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 220 FNIHIMDFQPGDFLNVKEVHYNQHGL-LLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW 278
             + I     G  +     H     +  +L G+G   +      +QAGD L +AP   + 
Sbjct: 26  AEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEKIELQAGDWLRIAPDGKRQ 85

Query: 279 YAALGKTRTRYL 290
            +A   +   +L
Sbjct: 86  ISAASDSPIGFL 97

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Length = 167

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 220 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWY 279
           F     + +PG +    E H + H ++++ G     L D   P+   D +++AP      
Sbjct: 56  FETRYFEVEPGGYTT-LERHEHTHVVMVVRGHAEVVLDDRVEPLTPLDCVYIAPHAWHQI 114

Query: 280 AALGKTRT-RYLLYKDVNRN 298
            A G      +L   D +R+
Sbjct: 115 HATGANEPLGFLCIVDSDRD 134

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Length = 167

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 17/128 (13%)

Query: 94  YLITPAMG---SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVD 150
            L+    G     F      ++    + L  H+    + VV+G A +         L   
Sbjct: 43  TLVGRPAGQEAPAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD-DRVEPLTPL 101

Query: 151 SYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRK 210
              Y+ P+  H + A G+   + F              IV S   +P      ++ ++  
Sbjct: 102 DCVYIAPHAWHQIHATGANEPLGF---LC---------IVDSDRDRPQRPDADDLARMCA 149

Query: 211 LLPQAVPF 218
             P     
Sbjct: 150 -DPAVARR 156

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS--WYPVQAGDVLWMAPFVP 276
            F +   +  P         H  +H + +LEG     L D      V  G+ +++    P
Sbjct: 38  RFVLTEFEVSPNGSTP-PHFHEWEHEIYVLEGSMGLVLPDQGRTEEVGPGEAIFIPRGEP 96

Query: 277 QWYAALGKTRTRYL 290
             +        R+L
Sbjct: 97  HGFVTGPGQTCRFL 110

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 83  PLPEWTNTLGAYLITPAMGS-HFVMYLANMQENARSALPPHDVERFIFVVQGSA-MLTNA 140
             P    T    LI    G+  FV+    +  N  +    H+ E  I+V++GS  ++   
Sbjct: 17  REPGAKETTHRKLIDTPDGADRFVLTEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPD 76

Query: 141 SGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF 174
            G + ++      ++P    H        T    
Sbjct: 77  QGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFL 110

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 42.9 bits (101), Expect = 9e-06
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 219 DFNIHIMDFQPGDFLNVKEVHYNQHG---LLLLEGQGIYRLGDSWYPVQAGDVLWMAPFV 275
                +    PG      +VH ++        LEG+ + R+G+    +  G   +     
Sbjct: 27  RMLYDLYALLPGQAQ---KVHVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGA 83

Query: 276 PQWYAALGKTRTRYL 290
           P        +    L
Sbjct: 84  PHGVRNESASPALLL 98

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Length = 192

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 206 FQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHG----LLLLEGQGIYRLGDSWY 261
            ++  L P A      I  +         +   H    G    + +LEG       + W+
Sbjct: 90  MKIHTLFPYAADTGLEIFEITLLDHHQQ-MSSPH--ALGVIEYIHVLEGIMKVFFDEQWH 146

Query: 262 PVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291
            +Q G+ +      P  YAA+ +      +
Sbjct: 147 ELQQGEHIRFFSDQPHGYAAVTEKAVFQNI 176

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 220 FNIHIMDFQPGDFLNV-KEVHYNQH-GLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ 277
                M   PGD        H      L +++G G   +      +QAG ++ +      
Sbjct: 21  VQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHTQALQAGSLIAIERGQAH 80

Query: 278 WYAALGKTRTRYL 290
                G T  + +
Sbjct: 81  EIRNTGDTPLKTV 93

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Length = 162

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 202 PGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK-EVHYNQHGLLLLEGQGIYRLGDSW 260
           PG V   + L          IH++  +PG         HY +  + +L G+G   + +  
Sbjct: 28  PGAVRVNKSLGDAVGLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQ 87

Query: 261 YPVQAGDVLWM-APFVPQWYAALGKTRTRYL 290
           YP+  GD +           +  G      L
Sbjct: 88  YPIAPGDFVGFPCHAAAHSISNDGTETLVCL 118

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Length = 243

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 10/208 (4%)

Query: 84  LPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGV 143
           L EW N +  Y           + ++ +  +       H   +   VV G  M+T     
Sbjct: 17  LIEWENGVRQYSTV---RGDTEVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDVT 73

Query: 144 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLE-TP 202
                ++S    PP+  H  R +    ++  + +    +   T       D     +  P
Sbjct: 74  RKMTALESAYIAPPHVPHGARNDTDQEVIAIDIKRLKADETYTSPEDYFLDIFKTRDLLP 133

Query: 203 GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYP 262
           G        +   V     I +              H N+   + + G     +      
Sbjct: 134 G------MEVTFFVEDWVEIMLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGCTVE 187

Query: 263 VQAGDVLWMAPFVPQWYAALGKTRTRYL 290
           ++ G   +  P          +  ++ +
Sbjct: 188 MKFGTAYFCEPREDHGAINRSEKESKSI 215

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} Length = 163

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 219 DFNIHIMDFQPGDFLNVKEVHYNQHGL-LLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ 277
            F ++++  +PG   +++  H  Q    ++ EG  +       +P+  GD        P 
Sbjct: 42  QFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQGEHPMVPGDCAAFPAGDPN 101

Query: 278 W 278
            
Sbjct: 102 G 102

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Length = 125

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)

Query: 121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE 175
           PH  + +  V+ G A     +G+ + L         P   H     G    +   
Sbjct: 58  PHGQDTWT-VISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVS 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	100.0
1sfn_A	246	Conserved hypothetical protein; structural genomic	100.0
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	100.0
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	100.0
1sef_A	274	Conserved hypothetical protein; structural genomic	100.0
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.96
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.95
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.95
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.92
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.92
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.9
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	99.89
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.89
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.89
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	99.85
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	99.81
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.74
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.73
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.71
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.7
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.7
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.7
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.69
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.68
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.68
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.68
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.67
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.66
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.64
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	99.63
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	99.62
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	99.6
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.6
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	99.57
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	99.56
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.53
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.53
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.52
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.51
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.51
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.51
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.5
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.5
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.49
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.49
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.49
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.48
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.48
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.48
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.48
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.48
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.47
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.47
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	99.46
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.46
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.46
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.46
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.46
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.46
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.45
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.45
1sef_A	274	Conserved hypothetical protein; structural genomic	99.45
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.45
1v70_A	105	Probable antibiotics synthesis protein; structural	99.45
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.44
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.44
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.43
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.43
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.43
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.43
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.43
1v70_A	105	Probable antibiotics synthesis protein; structural	99.42
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.42
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	99.42
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.42
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.42
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	99.42
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.42
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.41
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	99.4
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.4
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	99.4
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.4
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.39
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.38
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.38
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.38
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.37
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.36
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.36
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.36
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.35
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	99.35
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	99.35
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.34
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.34
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.34
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.33
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	99.33
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	99.33
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	99.32
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.31
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.31
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.31
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.3
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	99.28
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	99.28
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	99.27
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.25
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	99.25
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.24
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	99.24
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.22
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.22
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	99.21
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.21
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.21
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.21
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.18
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.17
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.17
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.17
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.17
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	99.17
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	99.16
3bcw_A	123	Uncharacterized protein; structural genomics, join	99.16
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.15
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	99.15
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.14
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	99.13
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	99.12
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	99.12
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	99.12
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	99.08
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.07
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	99.07
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	99.06
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	99.04
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	99.04
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	99.03
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.02
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	98.98
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.97
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.96
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	98.94
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.93
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.93
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.91
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	98.81
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.77
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	98.76
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	98.76
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.73
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.72
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	98.72
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	98.71
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.62
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.59
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	98.53
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.52
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	98.51
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	98.42
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.41
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	98.39
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.38
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.37
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.37
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	98.36
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	98.35
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.35
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	98.31
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	98.31
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.31
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	98.26
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	98.26
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	98.23
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.17
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	98.14
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	98.14
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	98.13
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	98.05
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	97.95
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	97.95
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	97.89
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.87
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	97.85
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	97.85
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	97.84
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	97.81
3g7d_A	443	PHPD; non heme Fe(II) dioxygenase, cupin, biosynth	97.72
3uss_A	211	Putative uncharacterized protein; cupin, three his	97.71
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	97.7
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	97.7
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	97.6
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	97.54
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	97.47
3qwg_A	123	ESX-1 secretion-associated regulator ESPR; N-termi	97.35
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	97.31
3r1f_A	135	ESX-1 secretion-associated regulator ESPR; helix-t	97.2
4ghj_A	101	Probable transcriptional regulator; structural gen	97.19
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.1
3uss_A	211	Putative uncharacterized protein; cupin, three his	97.09
3omt_A	73	Uncharacterized protein; structural genomics, PSI-	97.03
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	96.99
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	96.98
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	96.98
2ewt_A	71	BLDD, putative DNA-binding protein; the DNA-bindin	96.97
2k9q_A	77	Uncharacterized protein; all helix, helix-turn-hel	96.91
3s8q_A	82	R-M controller protein; protein-DNA complex, helix	96.91
3qq6_A	78	HTH-type transcriptional regulator SINR; helix-tur	96.85
2ofy_A	86	Putative XRE-family transcriptional regulator; tra	96.84
1y7y_A	74	C.AHDI; helix-turn-helix, DNA-binding protein, tra	96.81
3kz3_A	80	Repressor protein CI; five helix bundle, DNA-bindi	96.81
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	96.81
3g5g_A	99	Regulatory protein; transcriptional regulator, hel	96.78
3t76_A	88	VANU, transcriptional regulator vanug; structural	96.76
1neq_A	74	DNA-binding protein NER; NMR {Enterobacteria phage	96.71
3f6w_A	83	XRE-family like protein; helix-turn-helix, DNA bin	96.65
2wus_R	112	RODZ, putative uncharacterized protein; structural	96.64
3vk0_A	114	NHTF, transcriptional regulator; HTH motif, XRE tr	96.63
2xi8_A	66	Putative transcription regulator; HTH DNA-binding	96.63
3eus_A	86	DNA-binding protein; structural genomics, PSI2,MCS	96.62
3b7h_A	78	Prophage LP1 protein 11; structural genomics, PSI2	96.56
2r1j_L	68	Repressor protein C2; protein-DNA complex, helix-t	96.54
1lmb_3	92	Protein (lambda repressor); protein-DNA complex, d	96.52
2b5a_A	77	C.BCLI; helix-turn-helix motif, gene regulation; 1	96.51
1adr_A	76	P22 C2 repressor; transcription regulation; NMR {E	96.5
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	96.48
3mlf_A	111	Transcriptional regulator; structural genomics, he	96.47
3f52_A	117	CLP gene regulator (CLGR); helix-turn-helix motif,	96.47
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	96.41
4ich_A	311	Transcriptional regulator; structural genomics, PS	96.41
3fym_A	130	Putative uncharacterized protein; HTH DNA binding,	96.4
3lfp_A	98	CSP231I C protein; transcriptional regulator, DNA	96.4
3ivp_A	126	Putative transposon-related DNA-binding protein; A	96.37
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	96.35
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	96.33
2o38_A	120	Hypothetical protein; alpha-beta, helix-turn-helix	96.33
2a6c_A	83	Helix-turn-helix motif; putative transcriptional r	96.31
3bs3_A	76	Putative DNA-binding protein; XRE-family, structur	96.31
3trb_A	104	Virulence-associated protein I; mobIle and extrach	96.25
2kpj_A	94	SOS-response transcriptional repressor, LEXA; NESG	96.24
1x57_A	91	Endothelial differentiation-related factor 1; HMBF	96.23
2wiu_B	88	HTH-type transcriptional regulator HIPB; transfera	96.2
3op9_A	114	PLI0006 protein; structural genomics, PSI-2, prote	96.19
1zug_A	71	Phage 434 CRO protein; gene regulating protein, tr	96.04
1r69_A	69	Repressor protein CI; gene regulating protein; 2.0	96.02
3kxa_A	141	NGO0477 protein, putative uncharacterized protein;	95.96
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	95.96
2l49_A	99	C protein; P2 bacteriophage, P2 C, direct repeats,	95.93
2p5t_A	158	Putative transcriptional regulator PEZA; postsegre	95.92
3fmy_A	73	HTH-type transcriptional regulator MQSA (YGIT/B302	95.9
1b0n_A	111	Protein (SINR protein); transcription regulator, a	95.68
3cec_A	104	Putative antidote protein of plasmid maintenance;	95.65
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	95.63
2eby_A	113	Putative HTH-type transcriptional regulator YBAQ;	95.46
2ef8_A	84	C.ECOT38IS, putative transcription factor; helix-t	95.43
3pxp_A	292	Helix-turn-helix domain protein; DNA-binding, basi	95.43
1nr3_A	122	MTH0916, DNA-binding protein TFX; northeast struct	95.42
1yll_A	200	PA5104, conserved hypothetical protein; structural	95.31
2jvl_A	107	TRMBF1; coactivator, helix-turn-helix, Pro binding	95.31
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	95.3
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	95.29
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	95.29
3bd1_A	79	CRO protein; transcription factor, helix-turn-heli	95.21
2ict_A	94	Antitoxin HIGA; helix-turn-helix, structural genom	94.95
2awi_A	317	PRGX; repressor, pheromone, DNA binding, regulator	94.91
2ppx_A	99	AGR_C_3184P, uncharacterized protein ATU1735; HTH-	94.77
2l1p_A	83	DNA-binding protein SATB1; PSI-biology, NESG, stru	94.75
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	94.57
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	94.54
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	94.37
3esg_A	193	HUTD, putative uncharacterized protein; beta barre	94.21
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	94.03
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	94.02
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	93.97
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	93.71
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	93.62
3bdn_A	236	Lambda repressor; repressor, allostery; HET: DNA;	93.57
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	93.56
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	93.45
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	93.42
3o9x_A	133	Uncharacterized HTH-type transcriptional regulato;	92.96
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	92.64
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	92.11
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	92.01
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	91.98
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	91.73
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	91.68
2fjr_A	189	Repressor protein CI; genetic switch, regulation,	91.67
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	91.52
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	91.39
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	91.35
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	91.21
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	90.93
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	90.55
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	90.03
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	89.97
1dw9_A	156	Cyanate lyase; cyanate degradation, structural gen	89.74
4diq_A	489	Lysine-specific demethylase NO66; structural genom	89.65
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	89.51
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	89.12
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	89.11
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	89.08
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	88.98
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	88.91
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	88.82
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	88.77
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	88.69
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	88.0
1yll_A	200	PA5104, conserved hypothetical protein; structural	87.94
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	87.9
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	87.9
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	87.76
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	87.69
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	87.66
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	87.14
2ypd_A	392	Probable JMJC domain-containing histone demethyla	86.32
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	86.11
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	85.44
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	85.24
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	85.17
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	84.97
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	84.77
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	84.29
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	84.01
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	83.52
1rzs_A	61	Antirepressor, regulatory protein CRO; helix-turn-	83.32
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	83.27
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	82.81
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	82.35
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	82.32
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	82.23
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	81.92
3g7d_A	443	PHPD; non heme Fe(II) dioxygenase, cupin, biosynth	81.86
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	81.63
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	81.08
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	80.54
2pij_A	67	Prophage PFL 6 CRO; transcription factor, helix-tu	80.04

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=100.00  E-value=4.2e-81  Score=575.51  Aligned_cols=262  Identities=82%  Similarity=1.352  Sum_probs=253.4

Q ss_pred             CCCcceeeecCCCCChhhhhcccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcC
Q 022278           38 SSKPMYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARS  117 (300)
Q Consensus        38 lsk~~~Sqver~~~sps~I~~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~  117 (300)
                      .|++.+|++.|++.|||+++++||.|||+|+++||||++++++.+.+|+|++++.++|++|..|++|++++++++||+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~~avI~~~~iv~s~lPg~~~~~~~vL~sP~~G~~f~~~lv~l~PGg~s   83 (266)
T 4e2q_A            4 KTNPIYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSS   83 (266)
T ss_dssp             ---CTTGGGTSCSSCGGGGTTSTTCCCCEECSSEEEECGGGCCCEECTTSSSEEEEEEECGGGTCSSEEEEEEECSSEEC
T ss_pred             ccCccchhccCcccChhhhhcccCcccEEEEcCeEEECccceEEeeCCCCcCEEEEEEcCCCCCCcEEEEEEEECcCCcC
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCceEEEEEEECEEEEEEcC-CcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCcceeeccCCCC
Q 022278          118 ALPPHDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQ  196 (300)
Q Consensus       118 ~~~~h~gEEf~yVLeG~v~l~v~g-g~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~  196 (300)
                      +.+.|++|||+|||+|++++++ + |++++|++||++|||++.+|+++|+++|+++||.++|+|++|.+|+++++|++|+
T Consensus        84 ~~~~h~~EEfiyVleG~l~l~l-~~g~~~~L~~Gds~y~p~~~~H~~~N~~~Ar~l~V~k~y~~~~g~~p~~~v~~~~dv  162 (266)
T 4e2q_A           84 GLPPQDIERLIFVVEGAVTLTN-TSSSSKKLTVDSYAYLPPNFHHSLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQ  162 (266)
T ss_dssp             CCCCTTEEEEEEEEEECEEEEC---CCCEEECTTEEEEECTTCCCEEEESSCEEEEEEEEECCCCTTCCCCCEEEEGGGS
T ss_pred             CCCCCCCeEEEEEEEEEEEEEE-CCCcEEEEcCCCEEEECCCCCEEEEeCCCEEEEEEEeEeeeCCCCCCceeeCcHhHC
Confidence            7788999999999999999999 8 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCc
Q 022278          197 PLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP  276 (300)
Q Consensus       197 ~~~~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~  276 (300)
                      |+++++|+++++|+|+|++++++|+||+|||+||+++|+||||+|||++|||+|+|+|++||+|++|++||+|||+|||+
T Consensus       163 ~~~~~~g~~~~~r~l~p~~~~~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~~~~~V~~GD~i~~~~~~~  242 (266)
T 4e2q_A          163 PLLETPGEVFELRKLLPMSVAYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVP  242 (266)
T ss_dssp             CCBCCTTCCSEEEESSCCSTTCSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCC
T ss_pred             CCcccCCCcEEEEEccCcccccceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEECCEEEEecCCCEEEECCCCc
Confidence            99999987778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEecCCccEEEEEEeecCCCCC
Q 022278          277 QWYAALGKTRTRYLLYKDVNRNPL  300 (300)
Q Consensus       277 H~~~n~G~e~~~fi~~kd~nr~~~  300 (300)
                      |||+|+|++|++||+|||||||||
T Consensus       243 h~~~n~G~e~~~yl~ykd~nr~~~  266 (266)
T 4e2q_A          243 QWYAALGKTRSRYLLYKDVNRNPL  266 (266)
T ss_dssp             EEEEEESSSCEEEEEEEECSSCCC
T ss_pred             EEEEeCCCCCEEEEEEccccCCCC
Confidence            999999999999999999999997

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=100.00  E-value=4.6e-60  Score=431.03  Aligned_cols=241  Identities=40%  Similarity=0.736  Sum_probs=229.3

Q ss_pred             hcccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEEecC--CCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECE
Q 022278           57 QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITP--AMGSHFVMYLANMQENARSALPPHDVERFIFVVQGS  134 (300)
Q Consensus        57 ~~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L~sp--~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~  134 (300)
                      +++|+++|+.+..+++++++++.+...+|.|.++..++|++|  ..+++|++++++++||+.+..+.  +|||+|||+|+
T Consensus         1 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~Pg~~~~~~~--~ee~~~Vl~G~   78 (246)
T 1sfn_A            1 MKHLGQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQATESV--YQRFAFVLSGE   78 (246)
T ss_dssp             CGGGTCCSCEEETTEEEECGGGCCCBCCTTSTTCEEEEEECTTSTTCCSSEEEEEEECTTCEEECCS--SEEEEEEEEEE
T ss_pred             CCcccCccEEeecCeEEECchhcEEecCCCccCCEEEEEecCCCCCCCcEEEEEEEECCCCcCCCCc--eeEEEEEEECE
Confidence            368999999999999999999999888999999999999999  77889999999999998876554  99999999999


Q ss_pred             EEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCC-CcceeeccCCCCCCcccCC-ceeEEEEee
Q 022278          135 AMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVFQLRKLL  212 (300)
Q Consensus       135 v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~-~p~~~~~~~~d~~~~~~~g-~~~~~~~l~  212 (300)
                      +++++ +|+++.|++||++|||++.+|+++|.++++++|+.++|+|++|. +|.++++|++|++..+++| .++.+|+|+
T Consensus        79 ~~~~~-~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~~~l~v~~~y~~~~g~~~p~~~vg~~~dv~~~~~~~~~g~~~r~l~  157 (246)
T 1sfn_A           79 VDVAV-GGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPYQTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLL  157 (246)
T ss_dssp             EEEEC-SSCEEEECTTEEEEECTTCCCEEEEEEEEEEEEEEECCCCBTTBCCCCCEEEETTTCCCEETTSCTTEEEEECS
T ss_pred             EEEEE-CCEEEEECCCCEEEECCCCCEEEEeCCCEEEEEEEeeeccCCCCcCCceeeccHhhCCccccCCCCCeEEEEeC
Confidence            99999 99999999999999999999999998899999999999999996 8999999999999999987 568888999


Q ss_pred             CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          213 PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       213 p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      |++.++++.|++++|+||++++++++|.+||.+|||+|+++|++||+|++|++||++|++++++|+|+|+|+++++||+|
T Consensus       158 p~~~~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl~~  237 (246)
T 1sfn_A          158 PDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLY  237 (246)
T ss_dssp             CCCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEESSSCEEEEEE
T ss_pred             CCccCCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCEEEEcCCCCEEEECCCCCEEEEcCCCCCEEEEEE
Confidence            98778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCC
Q 022278          293 KDVNRNPL  300 (300)
Q Consensus       293 kd~nr~~~  300 (300)
                      |||||||+
T Consensus       238 kd~~r~~~  245 (246)
T 1sfn_A          238 KDMNRHPL  245 (246)
T ss_dssp             EECSSCCC
T ss_pred             EecccCCC
Confidence            99999996

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=100.00  E-value=3.2e-58  Score=426.40  Aligned_cols=241  Identities=29%  Similarity=0.518  Sum_probs=225.1

Q ss_pred             cccCCcceeeeeeeeEeCC---CCeeeccCCCCCcceEEEEecC--CCCCcEEEEEEEEcCCCcC--CCCCCCceEEEEE
Q 022278           58 DLPGFTRSVYKRDHALITP---ESHVLSPLPEWTNTLGAYLITP--AMGSHFVMYLANMQENARS--ALPPHDVERFIFV  130 (300)
Q Consensus        58 ~~lg~trs~f~~~~av~~~---e~~~~~~~p~~~~~~~~~L~sp--~~g~~f~~~lv~l~PG~~~--~~~~h~gEEf~yV  130 (300)
                      ++|+. |+.+..+++++++   ++.+...+|+|.++..++|++|  ..++.|++++++++||+..  +.+.|++||++||
T Consensus        18 ~~~~~-~~~~~~~~avi~~~~~~~iv~~~lp~~~~~~~~~L~~p~~~~~~~~~~~~~~l~PG~~~~~~~h~H~~eE~~~V   96 (278)
T 1sq4_A           18 ELLTD-RAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFV   96 (278)
T ss_dssp             -CCCC-CCEECSSEEEECGGGCCGGGCBCCTTCEEEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEE
T ss_pred             ccccc-ceEeccceEEECCCCcccceeccCCCccCcEEEEEecCCCCCCCcEEEEEEEECCCCccCCCCcCCCceEEEEE
Confidence            35555 9999999999999   9999999999999999999999  4578999999999999877  3356899999999


Q ss_pred             EECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCCC-CcceeeccCCCCCCcccCC-cee
Q 022278          131 VQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVF  206 (300)
Q Consensus       131 LeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g~-~p~~~~~~~~d~~~~~~~g-~~~  206 (300)
                      |+|++++++ +|+++.|++||++|||++.+|+++|  +++++++|+.++|.+.+|. .|.++++|++|+++.+++| .++
T Consensus        97 l~G~l~v~v-~g~~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l~v~~~y~~~~g~~~p~~~vgn~~di~~~~~~~~~~~  175 (278)
T 1sq4_A           97 VEGELSLTL-QGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEGR  175 (278)
T ss_dssp             EESCEEEEE-SSCEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEEECCCCTTCCCCCCEEEEGGGSCCEECSSGGGC
T ss_pred             EeCEEEEEE-CCEEEEECCCCEEEECCCCcEEEEECCCCCEEEEEEEeccccCCCCcCCcccccchhhcCcccCCCCCCc
Confidence            999999999 9999999999999999999999999  5789999999999999996 7999999999999999987 455


Q ss_pred             --EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCC
Q 022278          207 --QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       207 --~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                        +.|+|+|++.++++.|++++|+||+++|++|+|.+||.+|||+|+|+|++||+|++|++||++||++|++|+|+|+|+
T Consensus       176 ~~~~r~l~p~~~~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~  255 (278)
T 1sq4_A          176 WSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGP  255 (278)
T ss_dssp             EEEECSSCTTCTTCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTEEEEEETTCEEEEEESCCEEEECCSS
T ss_pred             eeEEEEecCCCcCCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCCEEEEcCCC
Confidence              777889988899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEeecCCCCC
Q 022278          285 TRTRYLLYKDVNRNPL  300 (300)
Q Consensus       285 e~~~fi~~kd~nr~~~  300 (300)
                      ++++||+||||||||+
T Consensus       256 ~~~~yl~~~d~nr~~~  271 (278)
T 1sq4_A          256 GRFRYLLYKDVNRHMR  271 (278)
T ss_dssp             SCEEEEEEEECSSCCC
T ss_pred             CCEEEEEEEEcCCCcc
Confidence            9999999999999985

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=100.00  E-value=1.5e-52  Score=383.78  Aligned_cols=248  Identities=28%  Similarity=0.516  Sum_probs=221.8

Q ss_pred             ChhhhhcccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCC--CCCceEEEE
Q 022278           52 SPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP--PHDVERFIF  129 (300)
Q Consensus        52 sps~I~~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~--~h~gEEf~y  129 (300)
                      +++...+.|+++|+.|..+++++++++.+...+|.|.++..++|++|..++.|++++++++||+.+..+  .+++|||+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~   86 (261)
T 1rc6_A            7 VTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLY   86 (261)
T ss_dssp             --CBHHHHTCCCCEECTTSEEEECGGGSCCBCCTTEEEEEEEECCCGGGTCSSEEEEEEEEEEEEESSCSCCTTEEEEEE
T ss_pred             CcCccccccccceEEeECCEEEEChhhcEEeeccCCCCcEEEEEeCCCCCCcEEEEEEEEcCCCccCCCCCCCCceEEEE
Confidence            566688999999999999999999999988889999999999999998889999999999999887654  346899999


Q ss_pred             EEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCCCCcceeeccCCCCCCcccCC-cee
Q 022278          130 VVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPG-EVF  206 (300)
Q Consensus       130 VLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g-~~~  206 (300)
                      ||+|++++++ +|+++.|++||++|||++.+|+++|  +++++++|+.++|+|.+|..|.+++.+.+++++...+| +++
T Consensus        87 Vl~G~l~~~~-~~~~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~v~~~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~  165 (261)
T 1rc6_A           87 VISGNITAKA-EGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDV  165 (261)
T ss_dssp             EEESEEEEEE-TTEEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEECCCCTTCCCCCEEEEGGGSCCC-------C
T ss_pred             EEEeEEEEEE-CCEEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEEeccccCCCCCCceEEcCHHHCCcccCCCCcce
Confidence            9999999999 9999999999999999999999999  58999999999999999988999999999999998876 667


Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCC-c
Q 022278          207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK-T  285 (300)
Q Consensus       207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e  285 (300)
                      ..+.|++.+.+..+.+.+++++||+.++.|.||..+|.+|||+|++.+++||+++++++||++|++++++|++.|.|+ +
T Consensus       166 ~~~~l~~~~~~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~~~  245 (261)
T 1rc6_A          166 ILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGE  245 (261)
T ss_dssp             EEEECSCCSTTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSCEEEEETTCEEEECSSEEEEEEEC----
T ss_pred             EEEEecCcccCCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCEEEEeCCCCEEEECCCCcEEeEeCCCCc
Confidence            788888877677888999999999999987777788999999999999999999999999999999999999999999 9


Q ss_pred             cEEEEEEeecCCCCC
Q 022278          286 RTRYLLYKDVNRNPL  300 (300)
Q Consensus       286 ~~~fi~~kd~nr~~~  300 (300)
                      +++||+||||||||+
T Consensus       246 ~~~~l~~~d~~r~~~  260 (261)
T 1rc6_A          246 AFSYIYSKDCNRDVE  260 (261)
T ss_dssp             CEEEEEEEECSCCCC
T ss_pred             CEEEEEEecCCCCCC
Confidence            999999999999985

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=100.00  E-value=9.3e-50  Score=368.02  Aligned_cols=244  Identities=30%  Similarity=0.574  Sum_probs=225.3

Q ss_pred             hhcccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCC--CCCceEEEEEEEC
Q 022278           56 LQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP--PHDVERFIFVVQG  133 (300)
Q Consensus        56 I~~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~--~h~gEEf~yVLeG  133 (300)
                      -.++|+++|+.|..+++++++++++...+|.|.++..++|++|..++.|++++++++||+.+..+  .+++|||+|||+|
T Consensus        14 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G   93 (274)
T 1sef_A           14 QKELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDG   93 (274)
T ss_dssp             -CCCCCCCCEEETTTEEEECGGGCCCCCCTTEEEEEEEECSCGGGTCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEES
T ss_pred             CcccccccceEeEcCEEEEChhhcccccCCCCCCeEEEEEcCCCCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEEe
Confidence            45789999999999999999999998889999999999999998889999999999999887654  3468999999999


Q ss_pred             EEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCCCCcceeeccCCCCCCcccCC-ceeEEEE
Q 022278          134 SAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPG-EVFQLRK  210 (300)
Q Consensus       134 ~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g-~~~~~~~  210 (300)
                      ++++++ +|+++.|++||++|||++.+|+++|  +++|+++|+.++|+|.+|..|.+++.+++|+++.++++ +++..++
T Consensus        94 ~l~~~~-~~~~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~v~~~y~~~~g~~p~~~v~~~~d~~~~~~~~~~g~~~~~  172 (274)
T 1sef_A           94 RLRVSD-GQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWS  172 (274)
T ss_dssp             EEEEEC-SSCEEEEETTEEEEECTTSCCEEEESSSSCEEEEEEEEECCCCTTCCCCCEEEEGGGSCCEEGGGCTTEEEEE
T ss_pred             EEEEEE-CCEEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEEeeeeeCCCCCCcceeCChHHCCccccCCCCCeEEEE
Confidence            999999 9999999999999999999999999  68999999999999999999999999999999998764 5567888


Q ss_pred             eeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCC-ccEEE
Q 022278          211 LLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK-TRTRY  289 (300)
Q Consensus       211 l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~f  289 (300)
                      |++.+.+.++.+.+++++||+.++..|.|.++|.+|||+|++.+++||+++++++||+++++++++|++.|.|+ ++++|
T Consensus       173 l~~~~~~~~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~  252 (274)
T 1sef_A          173 LLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMY  252 (274)
T ss_dssp             CSCSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEECSSSCEEE
T ss_pred             eCCcccCCCEEEEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEeCCCCCCEEE
Confidence            88877677899999999999999874678899999999999999999999999999999999999999999999 99999


Q ss_pred             EEEeecCCCCC
Q 022278          290 LLYKDVNRNPL  300 (300)
Q Consensus       290 i~~kd~nr~~~  300 (300)
                      |+|||+|||++
T Consensus       253 l~~~~~~r~~~  263 (274)
T 1sef_A          253 VYSKDANREPE  263 (274)
T ss_dssp             EEEEECSSCCC
T ss_pred             EEEEcCCCCcc
Confidence            99999999974

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.96  E-value=1.3e-28  Score=220.90  Aligned_cols=182  Identities=14%  Similarity=0.198  Sum_probs=146.2

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeecc-
Q 022278          101 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYA-  179 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~-  179 (300)
                      +..+.+.++.+.||+..+.|.|++|+++|||+|++++++ +|+++.|++||++|+|++.+|.++|.++++++++..++. 
T Consensus        34 ~~~~~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i-~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i~~~~~~  112 (227)
T 3rns_A           34 QPNSYISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI-ENNKKTISNGDFLEITANHNYSIEARDNLKLIEIGEKIGD  112 (227)
T ss_dssp             CSSEEEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE-SSCEEEEETTEEEEECSSCCEEEEESSSEEEEEEEECC--
T ss_pred             CCCcEEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCcEEEEEEeeccc
Confidence            346788899999999888889999999999999999999 999999999999999999999999988999999977764 


Q ss_pred             -c-----cCCCCcceeeccCCCCCCcccCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEE
Q 022278          180 -S-----LENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGI  253 (300)
Q Consensus       180 -~-----~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~  253 (300)
                       .     .++..+ ..+-+..|.  .++..+++..+.|...+   .+.+.+++|+||..++. |+|..++.+|||+|++.
T Consensus       113 ~~~~~~~~~~l~~-~~~~~~~d~--~~~~~g~~~~~~l~~~~---~~~~~~~~~~~G~~~~~-H~H~~~e~~~Vl~G~~~  185 (227)
T 3rns_A          113 GNMENKTLKMLES-ASAFNLAEV--VEYQEGKIVSKNLVAKP---NLVMTIMSFWKGESLDP-HKAPGDALVTVLDGEGK  185 (227)
T ss_dssp             ---------------CCEESGGG--SCCCTTCEEEEEEEEET---TEEEEEEEECTTCEEEE-ECCSSEEEEEEEEEEEE
T ss_pred             chhhhhHhhcCCc-cccCcHHHc--cccCCCCEEEEEEEECC---CeEEEEEEECCCCccCC-EECCCcEEEEEEeEEEE
Confidence             2     222222 223334332  12333455566666432   47888999999999996 78889999999999999


Q ss_pred             EEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          254 YRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       254 ~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      +++||+++.+++||.+|+|++++|++.|. .+++++++
T Consensus       186 ~~i~g~~~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~ll  222 (227)
T 3rns_A          186 YYVDGKPFIVKKGESAVLPANIPHAVEAE-TENFKMLL  222 (227)
T ss_dssp             EEETTEEEEEETTEEEEECTTSCEEEECC-SSCEEEEE
T ss_pred             EEECCEEEEECCCCEEEECCCCcEEEEeC-CCCEEEEE
Confidence            99999999999999999999999999994 56677665

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.95  E-value=3.2e-27  Score=213.72  Aligned_cols=190  Identities=14%  Similarity=0.137  Sum_probs=144.9

Q ss_pred             cceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEE-eCCCCceEEee--
Q 022278           89 NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY-LPPNFAHSLRA--  165 (300)
Q Consensus        89 ~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~y-fpa~~~H~~~N--  165 (300)
                      +.....+...    ...+.+++++||+..+.|.|+++|++||++|++++++ +|+++.|++||++| +|++.+|+++|  
T Consensus        23 Gv~~~~l~~~----~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~-~~~~~~l~~Gd~i~~ip~~~~H~~~n~~   97 (243)
T 3h7j_A           23 GVRQYSTVRG----DTEVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV-GDVTRKMTALESAYIAPPHVPHGARNDT   97 (243)
T ss_dssp             SCEEEEEEET----TEEEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE-TTEEEEEETTTCEEEECTTCCEEEEECS
T ss_pred             CeEEEEEECC----CCEEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE-CCEEEEECCCCEEEEcCCCCcEeeEeCC
Confidence            3555555433    2345567799998888888999999999999999999 99999999999998 99999999999  


Q ss_pred             CCeEEEEEEEeeccccCCC-Ccceee-ccCCCCCCcccCCceeEEEEeeCCCCCcceEEEEEEecC-CcccCcceeeccc
Q 022278          166 EGSATLVVFERRYASLENH-ITEQIV-GSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQP-GDFLNVKEVHYNQ  242 (300)
Q Consensus       166 ~~~a~vl~v~~~y~~~~g~-~p~~~~-~~~~d~~~~~~~g~~~~~~~l~p~~~~~~~~~~~~tl~P-G~~~p~~~~H~~e  242 (300)
                      +++++++++. ++...++. .|..+. .....-.  ...+  .....+    .+..+.+.+++|+| |+.++. |.|.++
T Consensus        98 ~~~~~~l~i~-r~~~~e~~~~p~g~~~~~L~~~~--~~~~--~~~~~~----~~~~~~~~~~~~~p~g~~~~~-H~H~~~  167 (243)
T 3h7j_A           98 DQEVIAIDIK-RLKADETYTSPEDYFLDIFKTRD--LLPG--MEVTFF----VEDWVEIMLAKIPGNGGEMPF-HKHRNE  167 (243)
T ss_dssp             SSCEEEEEEE-ECCTTCCCCCCTTSEECCEECSC--SBTT--BCEEEE----EETTEEEEEEEECTTTEEEEE-ECCSSE
T ss_pred             CCcEEEEEEe-ccCccccCCCchhhhhhhccCcc--cccC--cceeee----ccceeEEEEEEECCCCCcCCC-EeCCCc
Confidence            6789999984 66544432 222221 1111000  0000  000000    12236677889999 988886 789999


Q ss_pred             eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEe
Q 022278          243 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  293 (300)
Q Consensus       243 h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  293 (300)
                      |.+|||+|++.+.+||+++.+++||++|++++++|++.|.|++++++|..-
T Consensus       168 e~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~  218 (243)
T 3h7j_A          168 QIGICIGGGYDMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIF  218 (243)
T ss_dssp             EEEEECSSCEEEEETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             EEEEEEECEEEEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            999999999999999999999999999999999999999999999988653

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.95  E-value=3.8e-26  Score=213.64  Aligned_cols=214  Identities=18%  Similarity=0.154  Sum_probs=154.3

Q ss_pred             eEeCCCCeeeccCCCCCcceEEEEecCC-CCCcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEecc
Q 022278           72 ALITPESHVLSPLPEWTNTLGAYLITPA-MGSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMV  149 (300)
Q Consensus        72 av~~~e~~~~~~~p~~~~~~~~~L~sp~-~g~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~  149 (300)
                      .++++++......   .+...++++++. .+..|.++++++.||+..+.|.|. .+|++||++|++++++ +|+++.|++
T Consensus        16 ~v~r~~~~~~~~~---~g~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-~~~~~~l~~   91 (337)
T 1y3t_A           16 YLLRSGEGERYLF---GRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL-DGERYLLIS   91 (337)
T ss_dssp             EEECTTCSEEEEE---TTEEEEEEECHHHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE-TTEEEEECT
T ss_pred             EEecCCCccEEEE---CCeEEEEEeecCCCCCeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE-CCEEEEECC
Confidence            3455555433222   346788888776 567999999999999887777777 8999999999999999 999999999


Q ss_pred             CcEEEeCCCCceEEee-CCeEEEEEEEeec----------cccCCC-Ccc---------ee----------ecc------
Q 022278          150 DSYTYLPPNFAHSLRA-EGSATLVVFERRY----------ASLENH-ITE---------QI----------VGS------  192 (300)
Q Consensus       150 Gds~yfpa~~~H~~~N-~~~a~vl~v~~~y----------~~~~g~-~p~---------~~----------~~~------  192 (300)
                      ||++++|++.+|.++| ..+++++|+..+-          ++..+. .|.         .+          +..      
T Consensus        92 Gd~~~~p~~~~H~~~n~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~a~~~gv~~~~~~~~~~  171 (337)
T 1y3t_A           92 GDYANIPAGTPHSYRMQSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPAC  171 (337)
T ss_dssp             TCEEEECTTCCEEEEECSTTEEEEEEEETTSSTHHHHHHSEECSCSSCCSSCCCCCTTCTTGGGTSSCEECCCCCCCSSC
T ss_pred             CCEEEECCCCcEEEEECCCCeEEEEEECCCCHHHHHHHhCcccccccCCCCCCcccCHHHHHHhHhhccEEEcCCCCccc
Confidence            9999999999999999 4469999884432          111221 110         00          000      


Q ss_pred             ------CCCCCCcc------------cCCceeEEEEeeCCC-CCcceEEEEEEecC-CcccCcceeec-cceEEEEEEee
Q 022278          193 ------TDKQPLLE------------TPGEVFQLRKLLPQA-VPFDFNIHIMDFQP-GDFLNVKEVHY-NQHGLLLLEGQ  251 (300)
Q Consensus       193 ------~~d~~~~~------------~~g~~~~~~~l~p~~-~~~~~~~~~~tl~P-G~~~p~~~~H~-~eh~~~iL~G~  251 (300)
                            ...++...            +..++...+.|.+.. .+..+ +.+.++.| |...+. |.|. .+|.+|||+|+
T Consensus       172 ~~~~~~~~~l~~~~~~~v~r~~~~~~~~~~g~~~~~l~~~~~~~~~~-~~~~~~~p~g~~~~~-h~H~~~~e~~~vl~G~  249 (337)
T 1y3t_A          172 SAKLAELTELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQKNTDGQF-IVVSSEGPKGDRIVD-HYHEYHTETFYCLEGQ  249 (337)
T ss_dssp             SCEECCBCSCCSSSCCEEECTTCSEEEEETTEEEEEEECGGGTTTSC-EEEEEEECSCCCCCC-EECSSCEEEEEEEESC
T ss_pred             cccchhhhcCCCCCCCEEECCCCcCEEEECCcEEEEEecccccCCcE-EEEEEEcCCCCCCCC-cCCCCCcEEEEEEeCE
Confidence                  00111110            000223456666533 33333 44556767 556665 7787 68999999999


Q ss_pred             EEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          252 GIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       252 G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +.+++||+++.+++||+++++++++|++.|.|+ +++|++.
T Consensus       250 ~~~~i~~~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v  289 (337)
T 1y3t_A          250 MTMWTDGQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGV  289 (337)
T ss_dssp             EEEEETTEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEE
T ss_pred             EEEEECCEEEEECCCCEEEECCCCeEEEEECCC-CeEEEEE
Confidence            999999999999999999999999999999998 8888876

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.92  E-value=9.1e-24  Score=200.24  Aligned_cols=203  Identities=15%  Similarity=0.148  Sum_probs=151.3

Q ss_pred             ceEEEEecCCC-C-CcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEc--CC--cEEEeccCcEEEeCCCCceE
Q 022278           90 TLGAYLITPAM-G-SHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNA--SG--VSSKLMVDSYTYLPPNFAHS  162 (300)
Q Consensus        90 ~~~~~L~sp~~-g-~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~--gg--~~~~L~~Gds~yfpa~~~H~  162 (300)
                      ..++.+.++.. . ..+.+..++++||+....|.|. .+|++||++|++++++.  +|  +++.|++||++|+|++..|.
T Consensus        36 G~~~~~~~~~~p~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~g~~H~  115 (361)
T 2vqa_A           36 GTTKQVGTYNFPVSKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGWGHS  115 (361)
T ss_dssp             EEEEEESTTTCTTCCSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEECTTCEEE
T ss_pred             ceEEEeChhhCccccceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEE
Confidence            34444444433 2 4688999999999877777677 99999999999999982  23  57999999999999999999


Q ss_pred             Eee--CCeEEEEEEEeeccccC---------------------------------CCCccee------------------
Q 022278          163 LRA--EGSATLVVFERRYASLE---------------------------------NHITEQI------------------  189 (300)
Q Consensus       163 ~~N--~~~a~vl~v~~~y~~~~---------------------------------g~~p~~~------------------  189 (300)
                      +.|  +++++++++.....+.+                                 ......+                  
T Consensus       116 ~~n~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~p~~vLa~~~~v~~~~~~~l~~~~~~i~~~~~~p~~~~~~~~~~~~  195 (361)
T 2vqa_A          116 IEGIGPDTAKFLLVFNDGTFSEGATFSVTDWLSHTPIAWVEENLGWTAAQVAQLPKKQVYISSYGPASGPLASATPQGQT  195 (361)
T ss_dssp             EEECSSSCEEEEEEESSTTCCTTSSEEHHHHHHTSCHHHHHHHHTCCHHHHTTSCSSCCCEECSSCCCCCGGGCCCSSCC
T ss_pred             EEeCCCCCEEEEEEECCCCccccceecHhHHHHhCCHHHHHHHhCcCHHHHHhccccCceEEeCCCCCCccccccccCcC
Confidence            999  47899999876654432                                 0000000                  


Q ss_pred             -------eccCCCCCCc-ccCCceeEEEEeeCCCC-C-cceEEEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEe--
Q 022278          190 -------VGSTDKQPLL-ETPGEVFQLRKLLPQAV-P-FDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRL--  256 (300)
Q Consensus       190 -------~~~~~d~~~~-~~~g~~~~~~~l~p~~~-~-~~~~~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~--  256 (300)
                             +-+..+.+.. ...|+  .++.+++.+. . ..+.+.+++++||+.++. |.|.. +|.+|||+|++.+.+  
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~gg--~~~~~~~~~~~~~~~~~~~~~~l~pg~~~~~-H~H~~~~E~~~Vl~G~~~~~v~~  272 (361)
T 2vqa_A          196 AKIEVPHTHNLLGQQPLVSLGGN--ELRLASAKEFPGSFNMTGALIHLEPGAMRQL-HWHPNADEWQYVLDGEMDLTVFA  272 (361)
T ss_dssp             CBCCSCCEEECTTSCCSEEETTE--EEEEECTTTCTTSTTCEEEEEEECTTCEEEE-EECSSCCEEEEEEESCEEEEEEC
T ss_pred             CCCCcceEeccccCCCcccCCCc--eEEEEehhhCcCcccceEEEEEECCCccccc-ccCCCCCEEEEEEeCEEEEEEEc
Confidence                   0011111111 11122  3455554332 2 368889999999999987 67766 899999999999999  


Q ss_pred             -CCE--EEEccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278          257 -GDS--WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  295 (300)
Q Consensus       257 -~g~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~  295 (300)
                       ||+  ++.+++||+++++++++|++.|.|+++++||+..+-
T Consensus       273 ~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~  314 (361)
T 2vqa_A          273 SEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFND  314 (361)
T ss_dssp             STTCEEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESS
T ss_pred             CCCcEEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECC
Confidence             888  999999999999999999999999999999998753

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.92  E-value=1.7e-23  Score=200.36  Aligned_cols=190  Identities=16%  Similarity=0.193  Sum_probs=146.0

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc--CCc--EEEeccCcEEEeCCCCceEEee-CCeEEEEEEEe
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA--SGV--SSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFER  176 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~--gg~--~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~  176 (300)
                      ..|.+..+++.||+..+.|.|..+|++||++|++++++.  +|+  ++.|++||.+++|++..|.++| .++++++++..
T Consensus        77 ~~~~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~~v~~  156 (385)
T 1j58_A           77 ENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFD  156 (385)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEES
T ss_pred             CceEEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEECCCCeEEEEECCCCEEEEEEEC
Confidence            479999999999997777878899999999999999982  345  6799999999999999999999 44577777432


Q ss_pred             ecccc--C-------------------------------------------------------CCCcceeeccCCCCCCc
Q 022278          177 RYASL--E-------------------------------------------------------NHITEQIVGSTDKQPLL  199 (300)
Q Consensus       177 ~y~~~--~-------------------------------------------------------g~~p~~~~~~~~d~~~~  199 (300)
                      .-...  .                                                       +..|..++-++.+.+..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~p~evla~~~~vs~~~~~~l~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (385)
T 1j58_A          157 DGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPI  236 (385)
T ss_dssp             CTTCCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCCSSCSEEEGGGSCCE
T ss_pred             CCCccccchhhhhhhhhcccHHHHHHHhCCCHHHHHhcccccceEeccCCCCccccccccCCCCCCCCCeeeecccCCCe
Confidence            21100  0                                                       00111222233333332


Q ss_pred             ccCCceeEEEEeeCCCCC--cceEEEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEeC-----CEEEEccCCcEEEe
Q 022278          200 ETPGEVFQLRKLLPQAVP--FDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLG-----DSWYPVQAGDVLWM  271 (300)
Q Consensus       200 ~~~g~~~~~~~l~p~~~~--~~~~~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~~-----g~~~~v~~GD~i~~  271 (300)
                      ..+++  ..+.+++.+..  ..+.+.+++++||+..+. |.|.. +|.+|||+|++.+.++     ++++.+++||++++
T Consensus       237 ~~~~g--~~~~~~~~~~~~~~~~~~~~~~l~pG~~~~~-h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~i  313 (385)
T 1j58_A          237 ESEGG--KVYIADSTNFKVSKTIASALVTVEPGAMREL-HWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYV  313 (385)
T ss_dssp             ECSSE--EEEEESTTTSTTCCSCEEEEEEECTTCEEEE-EECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEE
T ss_pred             eCCCc--eEEEeecccCCcccceEEEEEEECCCcccCc-eeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEE
Confidence            22333  34666665443  478999999999999987 67776 8999999999999998     89999999999999


Q ss_pred             CCCCceeEEecCCccEEEEEEee
Q 022278          272 APFVPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       272 ~~~~~H~~~n~G~e~~~fi~~kd  294 (300)
                      +++++|++.|.|+++++|++.-.
T Consensus       314 p~~~~H~~~n~~~~~~~~l~v~~  336 (385)
T 1j58_A          314 PFAMGHYVENIGDEPLVFLEIFK  336 (385)
T ss_dssp             CTTCBEEEEECSSSCEEEEEEES
T ss_pred             CCCCeEEEEECCCCCEEEEEEEC
Confidence            99999999999999999998744

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.90  E-value=1.5e-22  Score=195.37  Aligned_cols=192  Identities=13%  Similarity=0.160  Sum_probs=145.4

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEE-EEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEEe--
Q 022278          101 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAML-TNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFER--  176 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l-~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~--  176 (300)
                      +..+...+.+++||+..+.|.|..+|+.|||+|+..+ .+ +|+++.+++||.+++|++..|...| +....+.|+.-  
T Consensus       120 t~~L~a~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l~v~d  198 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLD  198 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEEC
T ss_pred             CCeeEEEEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCEEEEEcCCCEEEECcCCCEEEEcCCCCCCEEEEEccc
Confidence            4579999999999999999988889999999999977 77 9999999999999999999999999 65444444421  


Q ss_pred             ----ecccc------C-CCCc----c----------eeec---cC--CC-----CCCcc-------------cCC-ceeE
Q 022278          177 ----RYASL------E-NHIT----E----------QIVG---ST--DK-----QPLLE-------------TPG-EVFQ  207 (300)
Q Consensus       177 ----~y~~~------~-g~~p----~----------~~~~---~~--~d-----~~~~~-------------~~g-~~~~  207 (300)
                          .|...      + ...|    .          ++..   .+  ..     .++..             -++ +++.
T Consensus       199 ~Pl~~~l~~~f~e~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~sP~~~y~w~~~~~~L~~~~~~~~~~~~~~~~  278 (394)
T 3bu7_A          199 IPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGSPYDGLI  278 (394)
T ss_dssp             HHHHHHTTCCCEEECTTSSCCCCCCTTHHHHHHCSTTEEESSCCCCCSSCSCCEECHHHHHHHHHHHHTTCCCBTTTBEE
T ss_pred             chhhhhcCccccccCcccccCccCCccchhhhhcCcccccccccccCCCCCcEEecHHHHHHHHHHhhhccCcCcCCceE
Confidence                11111      0 0011    1          0100   00  01     11111             011 3333


Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC-
Q 022278          208 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG-  283 (300)
Q Consensus       208 ~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G-  283 (300)
                      +..+-|...+   ..+.+.+.+++||+.++. |.|.+++.+|||+|+|.+.+||+.+++++||++++|++..|++.|+| 
T Consensus       279 l~l~nP~~g~~~~~tl~~~~~~l~PG~~~~~-HrH~~~~v~~VleG~G~~~V~ge~~~~~~GD~~~iP~g~~H~~~N~g~  357 (394)
T 3bu7_A          279 LRYTNPQTGGHPMLTMGASMQMLRPGEHTKA-HRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDIFCVPAWTWHEHCNTQE  357 (394)
T ss_dssp             EEECCTTTSSCSSSSCEEEEEEECTTCBCCC-EEESSCEEEEEEECCEEEEETTEEEEECTTCEEEECTTCCEEEEECCS
T ss_pred             EEEeCCCCCCCCCCeeeEEEEEECCCCcCCC-cccCCcEEEEEEeCeEEEEECCEEEEEeCCCEEEECCCCeEEeEeCCC
Confidence            3333365432   468889999999999997 77888899999999999999999999999999999999999999999 


Q ss_pred             CccEEEEEEee
Q 022278          284 KTRTRYLLYKD  294 (300)
Q Consensus       284 ~e~~~fi~~kd  294 (300)
                      ++++.+|++.|
T Consensus       358 ~e~~~ll~i~D  368 (394)
T 3bu7_A          358 RDDACLFSFND  368 (394)
T ss_dssp             SCCEEEEEEES
T ss_pred             CCCeEEEEeeC
Confidence            89999999977

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=99.89  E-value=2.6e-22  Score=191.01  Aligned_cols=199  Identities=13%  Similarity=0.133  Sum_probs=142.0

Q ss_pred             ceEEEEecCC-CCCcEEEEEEEEcCCCcCC---CCCCC-ceEEEEEEECEEEEEEcCC-----cEEEeccCcEEEeCCCC
Q 022278           90 TLGAYLITPA-MGSHFVMYLANMQENARSA---LPPHD-VERFIFVVQGSAMLTNASG-----VSSKLMVDSYTYLPPNF  159 (300)
Q Consensus        90 ~~~~~L~sp~-~g~~f~~~lv~l~PG~~~~---~~~h~-gEEf~yVLeG~v~l~v~gg-----~~~~L~~Gds~yfpa~~  159 (300)
                      ..+++++++. .+..|+++ .++.|++...   .|.|. .+|++|||+|++++.+ ++     +++.|++||++++|++.
T Consensus        33 ~~~~~l~~~~~~~~~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v-~~~~g~~~~~~L~~GD~v~ip~g~  110 (350)
T 1juh_A           33 QLYRFYVTGPSSGYAFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWA-QSGNETQQTRVLSSGDYGSVPRNV  110 (350)
T ss_dssp             EEEEEEECHHHHTTSCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEE-EETTSCCEEEEEETTCEEEECTTE
T ss_pred             ceEEEEecCCCCCCcEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEE-CCcCCceEEEEECCCCEEEECCCC
Confidence            3456666654 45678888 6667776654   56565 8999999999999999 88     89999999999999999


Q ss_pred             ceEEee-CCeEEEEEEEeecc----------ccC----C---------------------------------CCcce-ee
Q 022278          160 AHSLRA-EGSATLVVFERRYA----------SLE----N---------------------------------HITEQ-IV  190 (300)
Q Consensus       160 ~H~~~N-~~~a~vl~v~~~y~----------~~~----g---------------------------------~~p~~-~~  190 (300)
                      +|+++| ...++++++..+-.          +.+    +                                 ..|.. ++
T Consensus       111 ~H~~~n~~~~~~~l~v~~p~~~~~~f~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  190 (350)
T 1juh_A          111 THTFQIQDPDTEMTGVIVPGGFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTV  190 (350)
T ss_dssp             EEEEEECSTTEEEEEEEESSCTTHHHHHHSEECCCTTCCSSCCC--------------CGGGGGGTCEECTTCCCCCCCB
T ss_pred             cEEEEeCCCCCEEEEEEcCccHHHHHHHhccccccccccccCCcccccCccccCHHHHHHHHHHcCCEeccccCChhHhh
Confidence            999999 33348888754421          111    0                                 00110 00


Q ss_pred             -------ccCCCCCCc-------c-c--C--C--------ceeEEEEeeC-CCCCc-ceEEEEEEecC---CcccCccee
Q 022278          191 -------GSTDKQPLL-------E-T--P--G--------EVFQLRKLLP-QAVPF-DFNIHIMDFQP---GDFLNVKEV  238 (300)
Q Consensus       191 -------~~~~d~~~~-------~-~--~--g--------~~~~~~~l~p-~~~~~-~~~~~~~tl~P---G~~~p~~~~  238 (300)
                             ..|.+-|..       + +  .  |        +++.+|.|+. +.... .|.|+.+++++   |+.++ +|+
T Consensus       191 ~~~a~~~~~w~~~~~~~l~~~~~p~~~~~~~g~~~~~~~~g~v~~~~l~~~~~~~~~~f~~~~i~~~~~~~g~~~~-~h~  269 (350)
T 1juh_A          191 NGTAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVP-TWS  269 (350)
T ss_dssp             TTEESSSSCSSSSCCCCCSSTTCCEEECTTCSCEEEECTTSCEEEEEEECHHHHGGGCEEEEEEEECCCCTTSCCC-CBC
T ss_pred             ccccccCCccccCcccccCCCCCceEECCCccchhhcccCCcEEEEEEEeCCcCceeEEEEEEEeeccccCCCCCC-ccc
Confidence                   011111111       1 0  0  1        2334666664 33344 78999999999   44676 478


Q ss_pred             eccceEEEEEEeeEEEEeCC-EEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          239 HYNQHGLLLLEGQGIYRLGD-SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       239 H~~eh~~~iL~G~G~~~~~g-~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      |.+++.+|||+|++.++++| +++.+++||+++||+|.+|+++|.++. ..+|+.
T Consensus       270 ~~~~~~~~vleG~~~i~i~g~~~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~  323 (350)
T 1juh_A          270 FPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFV  323 (350)
T ss_dssp             CSSCEEEEEEESCEEEEETTSCCEEECTTCEEEECTTCCEEEEESSSS-EEEEEE
T ss_pred             CCCcEEEEEEeeEEEEEECCeEEEEeCCCCEEEECCCCCEEEEecCCe-EEEEEE
Confidence            99999999999999999999 999999999999999999999998765 555543

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.89  E-value=3.8e-23  Score=179.98  Aligned_cols=148  Identities=11%  Similarity=0.142  Sum_probs=122.8

Q ss_pred             cCCcccccccCCCCcceeeecCCCC-Chhh-----hhcccCCcceeeeeee--------eEeCCCCeeec--cCCCCCcc
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTL-SPSH-----LQDLPGFTRSVYKRDH--------ALITPESHVLS--PLPEWTNT   90 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~-sps~-----I~~~lg~trs~f~~~~--------av~~~e~~~~~--~~p~~~~~   90 (300)
                      -|+++||+++|+|+++||++|||.. .|+.     |+++|+++...|+...        .+++.+++...  ......+.
T Consensus        24 ~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  103 (198)
T 2bnm_A           24 MDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGVRDNVDYY  103 (198)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSCCCCCCCBTTBCCCCGGGCCEECCSTTCSTTE
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHEEccCCCCcccCceEEeecccccccccccCCCce
Confidence            4789999999999999999999999 9998     9999999999998621        33444444221  11222345


Q ss_pred             eEEEEecCCCCCcEEEEEEEEcCCCcCC---CCCCCceEEEEEEECEEEEEEcCC----cEEEeccCcEEEeCCCCceEE
Q 022278           91 LGAYLITPAMGSHFVMYLANMQENARSA---LPPHDVERFIFVVQGSAMLTNASG----VSSKLMVDSYTYLPPNFAHSL  163 (300)
Q Consensus        91 ~~~~L~sp~~g~~f~~~lv~l~PG~~~~---~~~h~gEEf~yVLeG~v~l~v~gg----~~~~L~~Gds~yfpa~~~H~~  163 (300)
                      ....+.++..+..|+++.++++||+...   .|.|+++|++||++|++++.+ ++    +++.|++||++|||++.+|.+
T Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~-~~~~~~~~~~l~~GD~~~~~~~~~H~~  182 (198)
T 2bnm_A          104 VYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKW-GDKENPKEALLPTGASMFVEEHVPHAF  182 (198)
T ss_dssp             EEEECCCCTTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEE-SCTTSCEEEEECTTCEEEECTTCCEEE
T ss_pred             EEEeeccCCCCCcceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEE-CCcCCcccEEECCCCEEEeCCCCceEE
Confidence            6667776667789999999999999875   568899999999999999999 88    999999999999999999999


Q ss_pred             eeC---CeEEEEEEE
Q 022278          164 RAE---GSATLVVFE  175 (300)
Q Consensus       164 ~N~---~~a~vl~v~  175 (300)
                      +|.   ++++++|+.
T Consensus       183 ~n~~~~~~~~~l~v~  197 (198)
T 2bnm_A          183 TAAKGTGSAKLIAVN  197 (198)
T ss_dssp             EESTTSCCEEEEEEE
T ss_pred             EecCCCCCeEEEEEe
Confidence            985   689999884

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.89  E-value=8.3e-22  Score=187.97  Aligned_cols=189  Identities=11%  Similarity=0.119  Sum_probs=144.3

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEE-EEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeec
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAML-TNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRY  178 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l-~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y  178 (300)
                      ..|.+.+++++||+..+.|.|..+|++||++|++++ .+ +|+++.|++||++++|++.+|.+.|  +++++++++...-
T Consensus        98 ~~l~~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v-~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~p  176 (354)
T 2d40_A           98 ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAV-DGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDLP  176 (354)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEE-TTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECHH
T ss_pred             CcEEEEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEE-CCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECch
Confidence            368999999999998888888999999999999999 88 9999999999999999999999999  5788988885321


Q ss_pred             ----------cccCC-CCc----c---------eeec--cC-------CCCCCccc-----------CC---ceeEEEEe
Q 022278          179 ----------ASLEN-HIT----E---------QIVG--ST-------DKQPLLET-----------PG---EVFQLRKL  211 (300)
Q Consensus       179 ----------~~~~g-~~p----~---------~~~~--~~-------~d~~~~~~-----------~g---~~~~~~~l  211 (300)
                                +..+. ..|    .         .+..  ..       -..++..+           ++   .+..++.+
T Consensus       177 ~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~sp~~~y~~~~~~~~l~~~~~~~~~~~~~G~~~~~~  256 (354)
T 2d40_A          177 LVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYKMRYV  256 (354)
T ss_dssp             HHHHHTCCCEEECC--CCCCCSCTTTHHHHHSSSEECSSCCCCSSCSCCEECHHHHHHHHHHHHTTSCCBTTTBEEEEEC
T ss_pred             hHhhcCceeeecCccccCcCcCCcchhhhhhccCCCCccccccCCCcceeccHHHHHHHHHhhhhccccCCCCCeEEEEe
Confidence                      11110 000    0         0000  00       00111110           01   23345555


Q ss_pred             eCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEE
Q 022278          212 LPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR  288 (300)
Q Consensus       212 ~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  288 (300)
                      .|...+   ..+.+....|+||+..+. |.|..++.+||++|+|.+++||+.+.+++||++++|++..|++.|.  +++.
T Consensus       257 np~t~~~~~~ti~~~~~~l~pG~~~~~-H~h~~~ev~~v~~G~g~~~v~~~~~~~~~GD~~~vP~~~~H~~~n~--e~~~  333 (354)
T 2d40_A          257 NPVTGGYPMPSMGAFLQLLPKGFASRV-ARTTDSTIYHVVEGSGQVIIGNETFSFSAKDIFVVPTWHGVSFQTT--QDSV  333 (354)
T ss_dssp             CTTTSSCSSSSCEEEEEEECTTCBCCC-BEESSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCCEEEEEE--EEEE
T ss_pred             CCCcCCCCCCcceeEEEEECCCCCCCc-eecCCcEEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCeEEEEeC--CCEE
Confidence            565332   367778889999999987 7888889999999999999999999999999999999999999994  8899


Q ss_pred             EEEEee
Q 022278          289 YLLYKD  294 (300)
Q Consensus       289 fi~~kd  294 (300)
                      +|++-|
T Consensus       334 l~~~~d  339 (354)
T 2d40_A          334 LFSFSD  339 (354)
T ss_dssp             EEEEES
T ss_pred             EEEEcC
Confidence            999866

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.85  E-value=8.8e-22  Score=170.88  Aligned_cols=145  Identities=12%  Similarity=0.058  Sum_probs=118.3

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEEecCCCC
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG  101 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g  101 (300)
                      .|+++||+++|+|+++||++|||...|+.     |+++|+++...|+....--..++.+.  . ...+.....+.++..+
T Consensus        25 ltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~--~-~~~g~~~~~l~~~~~~  101 (192)
T 1y9q_A           25 LSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQLLSSERSF--P-DDLNMKIHTLFPYAAD  101 (192)
T ss_dssp             CCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTTSTHHHHHCCBC--T-TCTTEEEEEEEEEETT
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHcCCCCCCCccceEE--e-CCCCEEEEEeccCCCC
Confidence            48899999999999999999999999988     99999999999986210000011111  1 1234566677766777


Q ss_pred             CcEEEEEEEEcCCCcCC--CCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEe
Q 022278          102 SHFVMYLANMQENARSA--LPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFER  176 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~--~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~  176 (300)
                      ..|+++.++++||+...  .|.|+.+||+||++|++++.+ +|+++.|++||++|||++.+|.++|  ++++ ++|+..
T Consensus       102 ~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~-~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~  178 (192)
T 1y9q_A          102 TGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF-DEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVA  178 (192)
T ss_dssp             TTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE-TTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEE
T ss_pred             CcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE-CCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEe
Confidence            89999999999998765  456888999999999999999 9999999999999999999999999  5788 888853

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=99.81  E-value=3.7e-18  Score=163.15  Aligned_cols=200  Identities=14%  Similarity=0.134  Sum_probs=148.6

Q ss_pred             eEEEEecCCCC------CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEE-EEEcCCcEEEeccCcEEEeCCCCceEE
Q 022278           91 LGAYLITPAMG------SHFVMYLANMQENARSALPPHDVERFIFVVQGSAM-LTNASGVSSKLMVDSYTYLPPNFAHSL  163 (300)
Q Consensus        91 ~~~~L~sp~~g------~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~-l~v~gg~~~~L~~Gds~yfpa~~~H~~  163 (300)
                      +...|+.|..+      ..|...+.+++||+..+.|.|..+++.||++|+.. +.+ +|+++.+++||++++|++..|.+
T Consensus        84 r~~~l~nP~~~~~~~~t~~L~a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~v-dG~~~~~~~GD~v~iP~g~~H~~  162 (368)
T 3nw4_A           84 RALGLANPGLGGNAYISPTMWAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVV-NGDPVRMSRGDLLLTPGWCFHGH  162 (368)
T ss_dssp             CEEECCCTTSTTCSCSSSSCEEEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEE-TTEEEEEETTCEEEECTTCCEEE
T ss_pred             EEEEEeCCCCCCcCccCCceEEEEEEECCCCccCceecccceEEEEEecceEEEEE-CCEEEEEeCCCEEEECCCCcEEe
Confidence            44455555543      46999999999999998898889999999999996 888 99999999999999999999999


Q ss_pred             ee--CCeEEEEEEEe----e------cccc---------------------CCCCcceeeccCCC-----CCCccc----
Q 022278          164 RA--EGSATLVVFER----R------YASL---------------------ENHITEQIVGSTDK-----QPLLET----  201 (300)
Q Consensus       164 ~N--~~~a~vl~v~~----~------y~~~---------------------~g~~p~~~~~~~~d-----~~~~~~----  201 (300)
                      .|  ++++.+|.+..    .      |+..                     ++..|......-..     .||.++    
T Consensus       163 ~N~gde~l~~l~v~D~Pl~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~sP~~~ypw~~~~~aL  242 (368)
T 3nw4_A          163 MNDTDQPMAWIDGLDIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRAL  242 (368)
T ss_dssp             EECSSSCEEEEEEECHHHHHHHTCCCEEECCSSCSCCCCCSSCHHHHHHCSTTCCCGGGCSCCSSCSCCEECHHHHHHHH
T ss_pred             EeCCCCCeEEEEecchHHHhhcCceeeecccccccccccccCCcccchhhccccccccccCCCCCCCceecCHHHHHHHH
Confidence            99  56777665431    1      1111                     11111110000000     111110    


Q ss_pred             --------CC-----c-eeE-EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEc
Q 022278          202 --------PG-----E-VFQ-LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPV  263 (300)
Q Consensus       202 --------~g-----~-~~~-~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v  263 (300)
                              .|     . ++. ++..-|..++   ..+.+....|.||..+.. |.|..+..|+|++|+|.+.+||+...+
T Consensus       243 ~~~~~l~~~~~~~~~~~g~~~~~y~NP~tg~~~~pti~~~~~~L~pG~~t~~-hRht~s~Vy~V~eG~G~~~I~~~~~~w  321 (368)
T 3nw4_A          243 TEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRAGTETAT-RNEVGSTVFQVFEGAGAVVMNGETTKL  321 (368)
T ss_dssp             HHHHHHHHTTCSCSSBTTEEEEECBCTTTSSBSSSSCEEEEEEECTTCBCCC-EEESSCEEEEEEESCEEEEETTEEEEE
T ss_pred             HhhhhhhhccCCCcccCceEEEEEeCCCCCCCcchhHHhheEEECCCCccCC-eeccccEEEEEEeCcEEEEECCEEEEe
Confidence                    01     1 333 3333465443   468888999999999986 788888999999999999999999999


Q ss_pred             cCCcEEEeCCCCceeEEecCCccEEEEEEee
Q 022278          264 QAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       264 ~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd  294 (300)
                      ++||++.+|++.+|++.|.  +++.++.+-|
T Consensus       322 ~~gD~fvvP~w~~h~~~n~--~~a~Lf~~~D  350 (368)
T 3nw4_A          322 EKGDMFVVPSWVPWSLQAE--TQFDLFRFSD  350 (368)
T ss_dssp             CTTCEEEECTTCCEEEEES--SSEEEEEEES
T ss_pred             cCCCEEEECCCCcEEEEeC--CCEEEEEEeC
Confidence            9999999999999999997  6888888877

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.74  E-value=5.8e-17  Score=159.92  Aligned_cols=73  Identities=12%  Similarity=0.203  Sum_probs=65.3

Q ss_pred             ceEEEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEeCC----EEEE--ccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGD----SWYP--VQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~~g----~~~~--v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      ++.+..++|+||+..+. |.|.+ .|.+|||+|++.+.+.+    +.+.  |++||++++|+|.+|++.| |+++++|++
T Consensus       337 ~is~~~v~l~pGa~~~p-H~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~n-g~~~l~~l~  414 (476)
T 1fxz_A          337 RLSAEFGSLRKNAMFVP-HYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARS-QSDNFEYVS  414 (476)
T ss_dssp             TCCEEEEEECTTCEEEE-EEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEE-CSTTEEEEE
T ss_pred             cceEEEEEecCCceecc-eECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEe-CCCCEEEEE
Confidence            68889999999999986 78875 58899999999998865    4444  9999999999999999999 899999999


Q ss_pred             Ee
Q 022278          292 YK  293 (300)
Q Consensus       292 ~k  293 (300)
                      +.
T Consensus       415 f~  416 (476)
T 1fxz_A          415 FK  416 (476)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.73  E-value=4.8e-17  Score=138.10  Aligned_cols=106  Identities=16%  Similarity=0.303  Sum_probs=94.6

Q ss_pred             ccCCCCCCcccCC-c-----eeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEcc
Q 022278          191 GSTDKQPLLETPG-E-----VFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQ  264 (300)
Q Consensus       191 ~~~~d~~~~~~~g-~-----~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~  264 (300)
                      -+|++++...+.. +     ++..|+|+..+. ..+.+++++++||+.++. |.|.++|.+||++|++.+++||+++.++
T Consensus        10 ~~w~~v~~~~~~~~~~~p~~g~~~~~L~~~~~-~~~~~~~~~l~pG~~~~~-H~H~~~E~~~Vl~G~~~v~v~g~~~~l~   87 (156)
T 3kgz_A           10 GRWDGVAVMPYKQTAEAPFQDVSRQLLFADPN-LACEWRYFEVDEGGYSTL-ERHAHVHAVMIHRGHGQCLVGETISDVA   87 (156)
T ss_dssp             TEETTCCCEECCCCSSCSSEEEEEEEEECCTT-CSEEEEEEEEEEEEECCC-BBCSSCEEEEEEEEEEEEEETTEEEEEE
T ss_pred             CCccccchhhcccCCCCCcCCeEEEEEEcCCC-CcEEEEEEEECCCCccCc-eeCCCcEEEEEEeCEEEEEECCEEEEeC
Confidence            3688888888753 2     578888886553 678899999999999997 7888999999999999999999999999


Q ss_pred             CCcEEEeCCCCceeEEecCCccEEEEEEeecCCC
Q 022278          265 AGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRN  298 (300)
Q Consensus       265 ~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr~  298 (300)
                      +||++|++++++|++.|.|+++++||+.-...||
T Consensus        88 ~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~~d  121 (156)
T 3kgz_A           88 QGDLVFIPPMTWHQFRANRGDCLGFLCVVNAARD  121 (156)
T ss_dssp             TTCEEEECTTCCEEEECCSSSCEEEEEEEESSCC
T ss_pred             CCCEEEECCCCcEEeEeCCCCCEEEEEEEeCCCC
Confidence            9999999999999999999999999999888887

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.71  E-value=3.4e-16  Score=152.22  Aligned_cols=192  Identities=16%  Similarity=0.162  Sum_probs=137.2

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE---cCCcEEEeccCcEEEeCCCCceEEeeC---CeEEEEEEEe
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN---ASGVSSKLMVDSYTYLPPNFAHSLRAE---GSATLVVFER  176 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v---~gg~~~~L~~Gds~yfpa~~~H~~~N~---~~a~vl~v~~  176 (300)
                      ++.+..++++||+...+|.|..+|.+||++|++++.+   ++++++.|++||.+++|+|..|.+.|.   ++++++.+..
T Consensus        48 ~~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~  127 (416)
T 1uij_A           48 DYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAI  127 (416)
T ss_dssp             TCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEE
T ss_pred             cEEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEec
Confidence            4899999999999887777788999999999999987   246789999999999999999999993   5788887765


Q ss_pred             ecc-c-------cCCC-CcceeeccCC----------------CCC-Cc-------------------------------
Q 022278          177 RYA-S-------LENH-ITEQIVGSTD----------------KQP-LL-------------------------------  199 (300)
Q Consensus       177 ~y~-~-------~~g~-~p~~~~~~~~----------------d~~-~~-------------------------------  199 (300)
                      ... |       +.|. .|..+++...                .++ ..                               
T Consensus       128 ~~~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~g~Iv~~~~~~~~~~~~~~~~~~~  207 (416)
T 1uij_A          128 PVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSR  207 (416)
T ss_dssp             ESSBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTCTTCGGGSBSSSEEECCHHHHHHHTSSCBCCCG
T ss_pred             cCCCCCcceeeeecCCcccchhhhcCCHHHHHHHhCcCHHHHHhhhhccccccccCcceEEEeCCcccchhhhcccccCC
Confidence            321 0       1110 0000111000                001 00                               


Q ss_pred             ----------------c-cCC-ceeEEEEeeCCCCC----cceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEe
Q 022278          200 ----------------E-TPG-EVFQLRKLLPQAVP----FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL  256 (300)
Q Consensus       200 ----------------~-~~g-~~~~~~~l~p~~~~----~~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~  256 (300)
                                      + +.. ++ .++.+.+.+..    -++.+..+.|+||+..+. |.|... +.+||++|+|++.+
T Consensus       208 ~g~~~~~~~~~l~~~~p~~~~~~G-~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~p-H~h~~A~Ei~~V~~G~~~v~~  285 (416)
T 1uij_A          208 KTISSEDEPFNLRSRNPIYSNNFG-KFFEITPEKNPQLRDLDIFLSSVDINEGALLLP-HFNSKAIVILVINEGDANIEL  285 (416)
T ss_dssp             GGGGCSSSCEETTSSCCSEECSSE-EEEEECTTTCHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEEESEEEEEE
T ss_pred             CCCCCcccceeccccCCCccCCCc-eEEEEChHHCccchhcCcceEEEEEcCCcEecc-eEcCCCcEEEEEEeeEEEEEE
Confidence                            0 000 11 22233333321    247888999999999885 677755 78999999999975


Q ss_pred             CCE-----------------EE--EccCCcEEEeCCCCceeEEecCCccEEEEEEeecCCC
Q 022278          257 GDS-----------------WY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRN  298 (300)
Q Consensus       257 ~g~-----------------~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr~  298 (300)
                      -+.                 .+  .|++||++++|.|.+|+..|+  ++++|+++++-.+.
T Consensus       286 v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~l~f~~~~~~  344 (416)
T 1uij_A          286 VGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT--SNLNFLAFGINAEN  344 (416)
T ss_dssp             EEEC------------CCEEEEEEEEETTCEEEECTTCCEEEEES--SSEEEEEEEETCTT
T ss_pred             EcCCCccccccccccccceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEEcCCCC
Confidence            532                 56  899999999999999999999  68999999975433

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.70  E-value=4.5e-16  Score=150.38  Aligned_cols=190  Identities=12%  Similarity=0.083  Sum_probs=139.4

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE---cCCcEEEeccCcE------EEeCCCCceEEee---CCeEE
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN---ASGVSSKLMVDSY------TYLPPNFAHSLRA---EGSAT  170 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v---~gg~~~~L~~Gds------~yfpa~~~H~~~N---~~~a~  170 (300)
                      ++.+..++++||+...+|.|..+|++||++|++.+.+   ++.+++.|++||.      ++||+|..|.+.|   +++++
T Consensus        51 ~~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~  130 (397)
T 2phl_A           51 DYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLR  130 (397)
T ss_dssp             TCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEE
T ss_pred             cEEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCcccccceEEECCCCcEEEEeCCCCCCeE
Confidence            4899999999999887777899999999999999987   2346799999999      9999999999998   35788


Q ss_pred             EEEEEeecc-c------cCCCC-cceeeccCC----------------CCC-Cc--------------------------
Q 022278          171 LVVFERRYA-S------LENHI-TEQIVGSTD----------------KQP-LL--------------------------  199 (300)
Q Consensus       171 vl~v~~~y~-~------~~g~~-p~~~~~~~~----------------d~~-~~--------------------------  199 (300)
                      ++.+...-. |      +.|.. |..+++...                .++ .+                          
T Consensus       131 ~i~~~~~~~~~~~~~f~L~G~~~~~s~~~~~~~~vLa~af~v~~~~v~~l~~~~~~q~~~~Iv~~~~~~~~~~~~~~~~~  210 (397)
T 2phl_A          131 IIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKELSKHAKSS  210 (397)
T ss_dssp             EEEEEEESSSSSCCEEECCCBTTBCCGGGGSCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCTTTHHHHHHHHHTC
T ss_pred             EEEeecCCCCccceeeeccCCCchhHHhhcCCHHHHHHHhCCCHHHHHhhhhcccccccCceEEcCcccchhhhccCCCc
Confidence            887744211 1      11210 000111000                000 00                          


Q ss_pred             ---------c---cCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEeCCE-------
Q 022278          200 ---------E---TPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGDS-------  259 (300)
Q Consensus       200 ---------~---~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~~g~-------  259 (300)
                               +   -++|.  ++.+.+.+  .++.+..++|+||+..+. |.|... +.+||++|+|++.+-+.       
T Consensus       211 ~~~~l~~~~p~~~n~~G~--~~~v~~~~--l~is~a~v~l~pG~~~~P-H~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~  285 (397)
T 2phl_A          211 SRKSLSKQDNTIGNEFGN--LTERTDNS--LNVLISSIEMEEGALFVP-HYYSKAIVILVVNEGEAHVELVGPKGNKETL  285 (397)
T ss_dssp             ---------CEEEETTEE--EEEEEETT--TTEEEEEEEECTTEEEEE-EEESSCEEEEEEEESEEEEEEEEECC--CCS
T ss_pred             ccccccccCCcccCCCCe--EEEEeecc--CCeeEEEEEEcCCcEeee-eEcCCCCEEEEEEeeeEEEEEEeccccccCC
Confidence                     0   01122  23334444  678899999999999886 677755 78999999999998755       


Q ss_pred             -----EEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecCCCC
Q 022278          260 -----WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNP  299 (300)
Q Consensus       260 -----~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr~~  299 (300)
                           ...|++||++++|.|.+|+..|+|  +++|+++++-.+.|
T Consensus       286 g~~~~~~~l~~GDV~vvP~G~~h~~~n~~--~l~~l~f~~~s~~~  328 (397)
T 2phl_A          286 EYESYRAELSKDDVFVIPAAYPVAIKATS--NVNFTGFGINANNN  328 (397)
T ss_dssp             CEEEEEEEEETTCEEEECTTCCEEEEESS--SEEEEEEEESCTTC
T ss_pred             CceEEEEEecCCCEEEECCCCeEEEEeCC--CeEEEEEECCCCCC
Confidence                 678999999999999999999996  89999998765443

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.70  E-value=6.2e-16  Score=151.07  Aligned_cols=190  Identities=15%  Similarity=0.145  Sum_probs=136.3

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc---CCcEEEeccCcEEEeCCCCceEEeeC---CeEEEEEEEe
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA---SGVSSKLMVDSYTYLPPNFAHSLRAE---GSATLVVFER  176 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~---gg~~~~L~~Gds~yfpa~~~H~~~N~---~~a~vl~v~~  176 (300)
                      ++.+..++|+||+...+|.|..+|.+|||+|++.+.+.   +++++.|++||.+++|+|..|.+.|.   ++++++.+..
T Consensus        60 ~~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~  139 (434)
T 2ea7_A           60 NYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAI  139 (434)
T ss_dssp             TCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEE
T ss_pred             cEEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEec
Confidence            48999999999998888867889999999999999872   15789999999999999999999993   4788887743


Q ss_pred             ec-cc-------cCCC-CcceeeccCC----------------CCC-C--------------------------------
Q 022278          177 RY-AS-------LENH-ITEQIVGSTD----------------KQP-L--------------------------------  198 (300)
Q Consensus       177 ~y-~~-------~~g~-~p~~~~~~~~----------------d~~-~--------------------------------  198 (300)
                      .- .|       +.|. .|..+++...                .++ .                                
T Consensus       140 ~s~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~~~q~~g~Iv~~~~~~~~~~~~~~  219 (434)
T 2ea7_A          140 PVNNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKREQIQELMKHA  219 (434)
T ss_dssp             ESSBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTCC---------CCCSSSEEECCHHHHHHHHTTS
T ss_pred             CCCCCCceeeeeecCCcchhhhhhcCCHHHHHHHhCCCHHHHHhhhhcccccccccccccccceEEECCcccChhhcccc
Confidence            21 11       1121 0101111000                000 0                                


Q ss_pred             ----------c----------c---cCCceeEEEEeeCCCCC----cceEEEEEEecCCcccCcceeeccc-eEEEEEEe
Q 022278          199 ----------L----------E---TPGEVFQLRKLLPQAVP----FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEG  250 (300)
Q Consensus       199 ----------~----------~---~~g~~~~~~~l~p~~~~----~~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G  250 (300)
                                .          +   -+||  .++.+.+.+..    -++.+..++|+||+..+. |.|... +.+||++|
T Consensus       220 ~~~~~~g~~~~~~~~~l~~~~p~~~~~gG--~v~~~~~~~~P~L~~l~is~a~v~l~pG~m~~p-H~hp~A~Ei~~V~~G  296 (434)
T 2ea7_A          220 KSSSRKELSSQDEPFNLRNSKPIYSNKFG--RWYEMTPEKNPQLKDLDVFISSVDMKEGALLLP-HYSSKAIVIMVINEG  296 (434)
T ss_dssp             BCCCSSCTTCSSSCEETTSSCCSEEETTE--EEEEECTTTCHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEEES
T ss_pred             cccCCCCCCCcccceeeccCCCceeCCCc--EEEEEChhhCccccccCcceEEEEEcCCeeecc-EEcCCCCEEEEEEee
Confidence                      0          0   0112  23334444332    247888999999999885 777755 78999999


Q ss_pred             eEEEEeCCE----------------EE--EccCCcEEEeCCCCceeEEecCCccEEEEEEeecCC
Q 022278          251 QGIYRLGDS----------------WY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  297 (300)
Q Consensus       251 ~G~~~~~g~----------------~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr  297 (300)
                      +|++.+-+.                .+  .|++||++++|.|.+|+..|+  +++.|+++++-.+
T Consensus       297 ~~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~v~f~~~~~  359 (434)
T 2ea7_A          297 EAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINAT--SNLNFFAFGINAE  359 (434)
T ss_dssp             CEEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEETCT
T ss_pred             EEEEEEEecCccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEECCCC
Confidence            999976643                45  899999999999999999999  5799999986543

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.70  E-value=3.8e-16  Score=153.00  Aligned_cols=189  Identities=14%  Similarity=0.130  Sum_probs=133.9

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc-C--CcEEEeccCcEEEeCCCCceEEeeC---CeEEEEEEEe
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA-S--GVSSKLMVDSYTYLPPNFAHSLRAE---GSATLVVFER  176 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~-g--g~~~~L~~Gds~yfpa~~~H~~~N~---~~a~vl~v~~  176 (300)
                      ++.+..++++||+...+|.|..+|++||++|++++.+. .  ++++.|++||.+++|+|..|.+.|.   ++++++++..
T Consensus        85 ~~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~  164 (445)
T 2cav_A           85 DYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAI  164 (445)
T ss_dssp             TEEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEE
T ss_pred             cEEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEec
Confidence            49999999999998877778899999999999999861 1  3789999999999999999999992   5899998866


Q ss_pred             ec------cc--cCC-CCcceeeccCCC----------------CCCcc-------------------c------CC---
Q 022278          177 RY------AS--LEN-HITEQIVGSTDK----------------QPLLE-------------------T------PG---  203 (300)
Q Consensus       177 ~y------~~--~~g-~~p~~~~~~~~d----------------~~~~~-------------------~------~g---  203 (300)
                      +-      ..  +.| ..|..+++..++                ++..+                   .      +|   
T Consensus       165 ~~~~pg~~~~F~laG~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~g~Iv~~~~~~~~~~~~~~~~~~~~g~~~  244 (445)
T 2cav_A          165 TFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSRKTLSS  244 (445)
T ss_dssp             CCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECCCC-------------------
T ss_pred             cCCCCCceeeeeccCCCchhhhhhcCCHHHHHHHhCCCHHHHHhhhcccCCCCcEEEeCCcchhhhcccccccCCCCCCC
Confidence            22      11  111 111111111100                01000                   0      00   


Q ss_pred             -----------------ceeEEEEeeCCCCC----cceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEeCC---
Q 022278          204 -----------------EVFQLRKLLPQAVP----FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGD---  258 (300)
Q Consensus       204 -----------------~~~~~~~l~p~~~~----~~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~~g---  258 (300)
                                       ++ .+..+.+.+..    -++.+.+.+|+||+..+. |.|+.. +..||++|+|.+.+=+   
T Consensus       245 ~~~~~~l~~~~p~~~~~~G-~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~P-H~hp~A~ei~~V~~G~~~v~vv~~~~  322 (445)
T 2cav_A          245 QDKPFNLRSRDPIYSNNYG-KLYEITPEKNSQLRDLDILLNCLQMNEGALFVP-HYNSRATVILVANEGRAEVELVGLEQ  322 (445)
T ss_dssp             -CCCEETTSSCCSEESSSE-EEEEECTTTCHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEEESCEEEEEEEC--
T ss_pred             cccceeccccCCCccCCCc-eEEEeChHHCcccccCCCceEEEEeeCCceeee-EECCCCcEEEEEEeeEEEEEEEeCCC
Confidence                             01 11222222221    158899999999999986 788766 6789999999877432   


Q ss_pred             ---------E----EEEccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278          259 ---------S----WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  295 (300)
Q Consensus       259 ---------~----~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~  295 (300)
                               +    ...+++||+.++|.|.+|+..|+  +++.|+.++.-
T Consensus       323 ~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~--~~~~~v~f~~~  370 (445)
T 2cav_A          323 QQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA--SDLNMVGIGVN  370 (445)
T ss_dssp             ---------CCEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEES
T ss_pred             cccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC--CCeEEEEEEcc
Confidence                     2    55699999999999999999998  57999999843

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.69  E-value=1.5e-15  Score=149.22  Aligned_cols=192  Identities=14%  Similarity=0.162  Sum_probs=136.2

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc--CC-----------------------cEEEeccCcEEEeC
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA--SG-----------------------VSSKLMVDSYTYLP  156 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~--gg-----------------------~~~~L~~Gds~yfp  156 (300)
                      ..+.+..++|+||+-..+|.|...|++||++|++.+.+.  ++                       +.+.|++||.++||
T Consensus        61 ~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv~~iP  140 (459)
T 2e9q_A           61 AGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVVP  140 (459)
T ss_dssp             HTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEEEEEC
T ss_pred             CceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCEEEEC
Confidence            467888999999998877778899999999999999872  21                       35699999999999


Q ss_pred             CCCceEEee--CCeEEEEEEEeecc---ccC---------CC-Cc---------------------ceeeccCC------
Q 022278          157 PNFAHSLRA--EGSATLVVFERRYA---SLE---------NH-IT---------------------EQIVGSTD------  194 (300)
Q Consensus       157 a~~~H~~~N--~~~a~vl~v~~~y~---~~~---------g~-~p---------------------~~~~~~~~------  194 (300)
                      +|.+|.+.|  +++++++++...-.   +++         |. .+                     ..+++..+      
T Consensus       141 aG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~evLa~  220 (459)
T 2e9q_A          141 AGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEE  220 (459)
T ss_dssp             TTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSSTTCC------------CCCCTTTTSCHHHHHH
T ss_pred             CCCCEEEEeCCCCCEEEEEEecCCCcccccCcccceeeccCCccccchhhhccccccccccccccccchhhcCCHHHHHh
Confidence            999999999  56888887755321   111         11 00                     01111110      


Q ss_pred             ----------------C---------------CCCc-------cc---------CC--c---e--e--------------
Q 022278          195 ----------------K---------------QPLL-------ET---------PG--E---V--F--------------  206 (300)
Q Consensus       195 ----------------d---------------~~~~-------~~---------~g--~---~--~--------------  206 (300)
                                      +               .|..       +.         .|  +   .  +              
T Consensus       221 aF~v~~~~v~kL~~~~~~~G~Iv~~~~~l~~~~P~~~~~e~~~~~~~~~~~~~~~g~~e~~~~~~l~~n~~~~~~~~~~~  300 (459)
T 2e9q_A          221 AFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLPEKDEEERSRGRYIESESESENGLEETICTLRLKQNIGRSERADVFN  300 (459)
T ss_dssp             HHTCCHHHHHHHHTTTCCSTTEEECCSSCCTTTTC------------------------CGGGSCCEEECSTTSCCSEEE
T ss_pred             hcCCCHHHHHhhhhcccCCccEEEeCCcccccCCccchhhhcccccccccccccCCccccccceeeeecccccccCCccc
Confidence                            0               0000       00         01  0   0  0              


Q ss_pred             ----EEEEeeCCCCC--c--ceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEeCC----EEEE--ccCCcEEEe
Q 022278          207 ----QLRKLLPQAVP--F--DFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGD----SWYP--VQAGDVLWM  271 (300)
Q Consensus       207 ----~~~~l~p~~~~--~--~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~~g----~~~~--v~~GD~i~~  271 (300)
                          .++.+.+.+..  .  ++.+..+.|+||+..+. |.|... |.+||++|+|.+.+-+    +.+.  |++||++++
T Consensus       301 ~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~p-H~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v~  379 (459)
T 2e9q_A          301 PRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAP-HYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMI  379 (459)
T ss_dssp             TTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEE-EEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEE
T ss_pred             CCCeeEEEeccccCccccccccceEEEEeeCCcCccc-eECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEEE
Confidence                11222222221  2  68889999999999985 777755 8899999999999865    5554  999999999


Q ss_pred             CCCCceeEEecCCccEEEEEEeec
Q 022278          272 APFVPQWYAALGKTRTRYLLYKDV  295 (300)
Q Consensus       272 ~~~~~H~~~n~G~e~~~fi~~kd~  295 (300)
                      |.|.+|...| |+++++||++++-
T Consensus       380 P~G~~H~~~n-g~~~~~~l~~~~s  402 (459)
T 2e9q_A          380 PQNFVVIKRA-SDRGFEWIAFKTN  402 (459)
T ss_dssp             CTTCEEEEEE-EEEEEEEEEEESS
T ss_pred             CCCCEEEEEe-CCCCeEEEEEecC
Confidence            9999999999 8999999999753

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.68  E-value=2.7e-16  Score=129.07  Aligned_cols=109  Identities=15%  Similarity=0.102  Sum_probs=95.6

Q ss_pred             ceeeccCCCCCCcccC--C-ceeEEEEeeC-CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEE--eCCEE
Q 022278          187 EQIVGSTDKQPLLETP--G-EVFQLRKLLP-QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR--LGDSW  260 (300)
Q Consensus       187 ~~~~~~~~d~~~~~~~--g-~~~~~~~l~p-~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~--~~g~~  260 (300)
                      .+.+.+++|+++.+.+  + .++..++|+. .+....+.+..++++||+.++. |.|..++.+|||+|++.+.  ++|++
T Consensus         2 ~m~v~~~~~v~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~-H~H~~~e~~~vl~G~~~~~~~~~~~~   80 (145)
T 3ht1_A            2 MMKRVHRTDVKAEIVREPGAKETTHRKLIDTPDGADRFVLTEFEVSPNGSTPP-HFHEWEHEIYVLEGSMGLVLPDQGRT   80 (145)
T ss_dssp             CCCCCCGGGSCCEECCSTTCEEEEEEEEECGGGTCCSEEEEEEEEEEEEECCC-EECSSCEEEEEEEECEEEEEGGGTEE
T ss_pred             cceEeehhhCCHhHcCCCCCCCcEEEEEEccCCCCCcEEEEEEEECCCCcCCC-ccCCCceEEEEEEeEEEEEEeECCEE
Confidence            4678899999999985  4 6677888875 4445688999999999999996 7888888899999999999  99999


Q ss_pred             EEccCCcEEEeCCCCceeEEecCCccEEEEEEeecC
Q 022278          261 YPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  296 (300)
Q Consensus       261 ~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~n  296 (300)
                      +.+++||++++++|++|++.|.|+++++|++.-.-+
T Consensus        81 ~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~  116 (145)
T 3ht1_A           81 EEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE  116 (145)
T ss_dssp             EEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred             EEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence            999999999999999999999999999999876443

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.68  E-value=1.6e-15  Score=150.40  Aligned_cols=73  Identities=15%  Similarity=0.188  Sum_probs=64.8

Q ss_pred             ceEEEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEeCC----EEE--EccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGD----SWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~~g----~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      ++.+..++|+||+..+. |.|.. .+.+|||+|++.+.+.+    +.+  .|++||++++|+|.+|++.| |+++++|++
T Consensus       371 ~is~a~v~L~PG~~~~p-H~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~viP~G~~H~~~N-g~e~l~~l~  448 (510)
T 3c3v_A          371 GLSAEYGNLYRNALFVP-HYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKS-QSDNFEYVA  448 (510)
T ss_dssp             TCEEEEEEEETTCEEEE-EEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEE-CSSEEEEEE
T ss_pred             eEEEEEEEecCCceecc-eECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEEECCCCeEEEEe-CCCCEEEEE
Confidence            67889999999999986 77774 58899999999998754    444  49999999999999999999 899999999


Q ss_pred             Ee
Q 022278          292 YK  293 (300)
Q Consensus       292 ~k  293 (300)
                      +.
T Consensus       449 f~  450 (510)
T 3c3v_A          449 FK  450 (510)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.68  E-value=4e-16  Score=133.80  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=94.8

Q ss_pred             eeeccCCCCCCcccCC------ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEE
Q 022278          188 QIVGSTDKQPLLETPG------EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWY  261 (300)
Q Consensus       188 ~~~~~~~d~~~~~~~g------~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~  261 (300)
                      .-.-+|++++...++.      .++..|.|+..+. ..+.+++++++||+.++. |.|.++|.+||++|++.+.+||+++
T Consensus        16 ~~~~~w~~v~~~~~~~~~~~p~~gv~~r~L~~~~~-~~~~~~~~~l~pG~~~~~-H~H~~~E~~~Vl~G~~~~~v~g~~~   93 (166)
T 3jzv_A           16 QSQYRWPGVDLLAYKEEGSAPFRSVTRQVLFSGNG-LTGELRYFEVGPGGHSTL-ERHQHAHGVMILKGRGHAMVGRAVS   93 (166)
T ss_dssp             CCCCCCTTSCEEECCCC-CCSCEEEEEEEEECCTT-CSEEEEEEEEEEEEECCC-BBCSSCEEEEEEEECEEEEETTEEE
T ss_pred             cCCcCcccChhhhcccCCCcccCCeEEEEEECCCC-CeEEEEEEEECCCCccCc-eeCCCcEEEEEEeCEEEEEECCEEE
Confidence            3445788888877653      3567888886553 678889999999999997 6888899999999999999999999


Q ss_pred             EccCCcEEEeCCCCceeEEecCCccEEEEEEeecCCC
Q 022278          262 PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRN  298 (300)
Q Consensus       262 ~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr~  298 (300)
                      .+++||++|++++++|++.|.|+++++||+.-...||
T Consensus        94 ~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i~~~~~d  130 (166)
T 3jzv_A           94 AVAPYDLVTIPGWSWHQFRAPADEALGFLCMVNAERD  130 (166)
T ss_dssp             EECTTCEEEECTTCCEEEECCTTSCEEEEEEEESSCC
T ss_pred             EeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEccCCC
Confidence            9999999999999999999999999999998887766

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.66  E-value=1.9e-15  Score=129.41  Aligned_cols=106  Identities=18%  Similarity=0.279  Sum_probs=88.8

Q ss_pred             cCCCCCCcccCC-----ceeEEEEeeCCCC---CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEc
Q 022278          192 STDKQPLLETPG-----EVFQLRKLLPQAV---PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPV  263 (300)
Q Consensus       192 ~~~d~~~~~~~g-----~~~~~~~l~p~~~---~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v  263 (300)
                      .|++++...++.     .++..++|+..+.   ...+.++.++++||+.++. |.|..+|.+|||+|++.+.+||+++.+
T Consensus        20 ~W~~~~~~~~~~~~~~~~g~~~~~L~~~~~g~~~~~~~~~~~~l~pG~~~~~-H~H~~~E~~~Vl~G~~~~~i~~~~~~l   98 (167)
T 3ibm_A           20 RWEGTEEEAYKAEGTHFSGARRQTLVGRPAGQEAPAFETRYFEVEPGGYTTL-ERHEHTHVVMVVRGHAEVVLDDRVEPL   98 (167)
T ss_dssp             EETTCCCC---------CCEEEEEEECTTTTCCSSSEEEEEEEECTTCBCCC-BBCSSCEEEEEEESEEEEEETTEEEEE
T ss_pred             ccccceeeeccCCCCcCCCcEEEEEECCCCCCCCCcEEEEEEEECCCCCCCC-ccCCCcEEEEEEeCEEEEEECCEEEEE
Confidence            355555544432     3567888886544   4578999999999999997 678899999999999999999999999


Q ss_pred             cCCcEEEeCCCCceeEEecC-CccEEEEEEeecCCC
Q 022278          264 QAGDVLWMAPFVPQWYAALG-KTRTRYLLYKDVNRN  298 (300)
Q Consensus       264 ~~GD~i~~~~~~~H~~~n~G-~e~~~fi~~kd~nr~  298 (300)
                      ++||++|++++++|++.|.| +++++||+.-+-.||
T Consensus        99 ~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~~d  134 (167)
T 3ibm_A           99 TPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSDRD  134 (167)
T ss_dssp             CTTCEEEECTTCCEEEEEESSSCCEEEEEEEESSCC
T ss_pred             CCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCCcC
Confidence            99999999999999999999 999999999887776

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.64  E-value=2.6e-15  Score=126.98  Aligned_cols=109  Identities=12%  Similarity=0.111  Sum_probs=93.3

Q ss_pred             CcceeeccCCCCCCcccCCceeEEEEee-CC-CCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC----
Q 022278          185 ITEQIVGSTDKQPLLETPGEVFQLRKLL-PQ-AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD----  258 (300)
Q Consensus       185 ~p~~~~~~~~d~~~~~~~g~~~~~~~l~-p~-~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g----  258 (300)
                      .+.+++.+++++|+..+...++..+.++ +. .....+.+..++++||+.++. |.|..+|.+||++|++.+.++|    
T Consensus         4 ~~~~~v~~~~~~~~~~~~~~G~~~~~l~~~~~~g~~~~~~~~~~~~pg~~~~~-H~H~~~E~~~Vl~G~~~~~~~~~~~~   82 (163)
T 1lr5_A            4 RDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPI-HRHSCEEVFTVLKGKGTLLMGSSSLK   82 (163)
T ss_dssp             CCCCSEEEGGGSCCBCTTCTTEEEEEEECHHHHCCSSEEEEEEEECTTCBCCE-EEESSCEEEEEEECCEEEEECCSSSS
T ss_pred             CCccEecChHHCChhhccCCCcceEEEeccccCCCCcEEEEEEEECCCCcCCC-eECCCCeEEEEEeCEEEEEECCcccc
Confidence            4678999999999999743334555554 43 334578899999999999986 7888889999999999999999    


Q ss_pred             -----EEEEccCCcEEEeCCCCceeEEecC-CccEEEEEEee
Q 022278          259 -----SWYPVQAGDVLWMAPFVPQWYAALG-KTRTRYLLYKD  294 (300)
Q Consensus       259 -----~~~~v~~GD~i~~~~~~~H~~~n~G-~e~~~fi~~kd  294 (300)
                           +++.+++||++|+++|++|++.|.| +++++|++.-.
T Consensus        83 ~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~  124 (163)
T 1lr5_A           83 YPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIIS  124 (163)
T ss_dssp             SCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEE
T ss_pred             ccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEEEEEEEC
Confidence                 9999999999999999999999999 99999998754

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=99.63  E-value=9e-16  Score=131.72  Aligned_cols=74  Identities=12%  Similarity=0.076  Sum_probs=67.0

Q ss_pred             CcEEEEEEEEcC-CCcCCC-CCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEe
Q 022278          102 SHFVMYLANMQE-NARSAL-PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFER  176 (300)
Q Consensus       102 ~~f~~~lv~l~P-G~~~~~-~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~  176 (300)
                      ..|++.+++++| |+.... +.|.+|||+|||+|++++++ +|++|.|++||++|||++.+|+|+|  +++||++|+.-
T Consensus        86 ~~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl-~g~~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~Vq~  163 (166)
T 2vpv_A           86 EYFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV-CKNKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFVQV  163 (166)
T ss_dssp             CSCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEE-TTEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEEEE
T ss_pred             ccceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEE-CCEEEEEcCCCEEEECCCCCEEEEECCCCCEEEEEEEE
Confidence            478999999999 665544 48999999999999999999 9999999999999999999999999  78899999953

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=99.62  E-value=1.7e-13  Score=123.87  Aligned_cols=174  Identities=17%  Similarity=0.161  Sum_probs=122.7

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeecccc
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASL  181 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~  181 (300)
                      ..|..-.+.+ .|... ....+.+|++|||+|+++|+. +|+.+++++||+++||.|..|+|+..+++|.+++...-.+.
T Consensus        45 ~~~~~G~~~~-~g~~~-v~~~p~dE~~~VleG~~~lt~-~g~~~~~~~Gd~~~ip~G~~~~w~~~~~~~~~y~~~~~~~~  121 (238)
T 3myx_A           45 QGIAAGIVEF-GTALS-VEAYPYTEMLVMHRGSVTLTS-GTDSVTLSTGESAVIGRGTQVRIDAQPESLWAFCASTQASG  121 (238)
T ss_dssp             TSEEEEEEEE-CSEEE-ESSCSSEEEEEEEESEEEEEE-TTEEEEEETTCEEEECTTCCEEEEECTTEEEEEEEECSCCS
T ss_pred             CCeEEEEEEe-ccccc-cccCCCcEEEEEEEeEEEEEC-CCeEEEEcCCCEEEECCCCEEEEEecCCeEEEEEeccCCCC
Confidence            4677777777 55333 224567999999999999998 99999999999999999999999998888888874331022


Q ss_pred             CCCCcceeeccCCCCCCcc---------cCC-ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEee
Q 022278          182 ENHITEQIVGSTDKQPLLE---------TPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ  251 (300)
Q Consensus       182 ~g~~p~~~~~~~~d~~~~~---------~~g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~  251 (300)
                      ++ .+. ++.--.+.+..+         +.| -....+.+...+ ...+..-+..-+||..+++  ++...|..|||+|+
T Consensus       122 p~-~~~-~~~i~~~~~l~P~~~p~p~~~l~G~P~~~~~~~~~~~-~g~~~~GiW~~tpG~~~~~--~~~~~E~~~ILeG~  196 (238)
T 3myx_A          122 PD-KSG-ITALDRLALLTPSSPPDPSIMISPLPQCRSNNLFEDT-ASTLRIGVWDSTPYERISR--PHKIHELMNLIEGR  196 (238)
T ss_dssp             CC-CCS-EEEECTTCCCEEECCCCGGGBSSCCCCEEEEEEEECS-SSSCEEEEEEECCEEBCCE--ECSSCEEEEEEECC
T ss_pred             CC-CCc-cEEecCCCCCCCCCCCChhheecCCchheeeEEEECC-CCCEEEeEEEeCCCEEECC--cCCCCEEEEEEEeE
Confidence            22 122 222222222222         344 222333343322 2345566888899987653  44556799999999


Q ss_pred             EEEEe-CCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          252 GIYRL-GDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       252 G~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      .+++. +|+.+.++|||.+++|+|..-...-..
T Consensus       197 v~lt~~~G~~~~~~aGD~~~~P~G~~~tWev~e  229 (238)
T 3myx_A          197 VVLSLENGSSLTVNTGDTVFVAQGAPCKWTSTG  229 (238)
T ss_dssp             EEEEETTSCEEEECTTCEEEECTTCEEEEEESS
T ss_pred             EEEEeCCCCEEEECCCCEEEECCCCEEEEEECc
Confidence            99997 678899999999999999887776653

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=99.60  E-value=6.3e-14  Score=125.61  Aligned_cols=201  Identities=16%  Similarity=0.178  Sum_probs=140.7

Q ss_pred             eeEeCCCCeeeccCCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccC
Q 022278           71 HALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVD  150 (300)
Q Consensus        71 ~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~G  150 (300)
                      ++++..++..+...+. .+.....|............++.++||+..+.|.|.+.|.+|||+|+.+  . +  .-.+.+|
T Consensus        11 ~v~i~~~~~~W~~~~~-~Gv~~~~L~~~~~e~g~~~~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~--d-~--~~~~~~G   84 (223)
T 3o14_A           11 PVVIDTDQLEWRPSPM-KGVERRMLDRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ--D-E--HGDYPAG   84 (223)
T ss_dssp             CEEEEGGGSCCEECSS-TTEEEEEEEEESSSSCEEEEEEEECTTEECCCEECTTCEEEEEEEEEEE--E-T--TEEEETT
T ss_pred             eEEeeCccCCceeCCC-CCEEEEEeecCCCccccEEEEEEECCCCCcccccCCCCEEEEEEEeEEE--E-C--CeEECCC
Confidence            4455555554444332 3455556644332233456789999999989889999999999999976  3 3  3489999


Q ss_pred             cEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCcceeeccCCCCCCcccCCceeEEEEeeCCCCCcceEEEEEEecCC
Q 022278          151 SYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPG  230 (300)
Q Consensus       151 ds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG  230 (300)
                      |+++.|++..|....++.|.+++....+.+.+-  +.  + +.+..+|.+...+++....|-..+   .-.++...++||
T Consensus        85 d~~~~P~g~~H~p~a~~gc~~~vk~~~~~~~d~--~~--v-~~~~~~W~~~~~~Gv~~~~L~~~~---~E~v~l~r~~~G  156 (223)
T 3o14_A           85 TYVRNPPTTSHVPGSAEGCTIFVKLWQFDPADR--TQ--F-SKNMEAELGAPVEGISTSLLHEDE---RETVTHRKLEPG  156 (223)
T ss_dssp             EEEEECTTCEECCEESSCEEEEEEESCSCTTCC--BC--E-EEETTTTCCCCBTTEEEEEEEECS---SCEEEEEEECTT
T ss_pred             eEEEeCCCCccccEeCCCCEEEEEecCCCCCcc--cc--c-ccchhcccccCCCCeEEEEEecCC---CcEEEEEEECCC
Confidence            999999999999887777888888777765553  32  2 556666666422333433444333   235678899999


Q ss_pred             cccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEe
Q 022278          231 DFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  293 (300)
Q Consensus       231 ~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  293 (300)
                      ..++. |.| .-+++|||+|+  +.+++.  ...+||.+..|++..|...+ |++.+. |+.|
T Consensus       157 ~~~~~-~~h-gG~EilVL~G~--~~d~~~--~~~~GsWlR~P~gs~h~~~a-g~~g~~-i~~k  211 (223)
T 3o14_A          157 ANLTS-EAA-GGIEVLVLDGD--VTVNDE--VLGRNAWLRLPEGEALSATA-GARGAK-IWMK  211 (223)
T ss_dssp             CEEEE-CCS-SCEEEEEEEEE--EEETTE--EECTTEEEEECTTCCEEEEE-EEEEEE-EEEE
T ss_pred             CccCC-CCC-CcEEEEEEEeE--EEECCc--eECCCeEEEeCCCCccCcEE-CCCCeE-EEEE
Confidence            99987 456 44457999998  557775  55799999999999999988 666555 4444

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.60  E-value=1.4e-14  Score=131.05  Aligned_cols=94  Identities=7%  Similarity=0.110  Sum_probs=84.1

Q ss_pred             CCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceE
Q 022278           84 LPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHS  162 (300)
Q Consensus        84 ~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~  162 (300)
                      .++-++...+++.++..+..|++.+++++||++.+.+ +|.+||++|||+|++++++ +|+++.|++||++|++++.+|.
T Consensus       145 ~~~~~g~~~r~l~p~~~~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~-~~~~~~l~~GD~~~~~~~~pH~  223 (246)
T 1sfn_A          145 FEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-EENYYPVTAGDIIWMGAHCPQW  223 (246)
T ss_dssp             TTSCTTEEEEECSCCCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE-TTEEEEEETTCEEEECTTCCEE
T ss_pred             cCCCCCeEEEEeCCCccCCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE-CCEEEEcCCCCEEEECCCCCEE
Confidence            4555666777788777888999999999999998764 7999999999999999999 9999999999999999999999


Q ss_pred             Eee--CCeEEEEEEEeec
Q 022278          163 LRA--EGSATLVVFERRY  178 (300)
Q Consensus       163 ~~N--~~~a~vl~v~~~y  178 (300)
                      ++|  ++++++|+++..-
T Consensus       224 ~~n~g~~~~~yl~~kd~~  241 (246)
T 1sfn_A          224 YGALGRNWSKYLLYKDMN  241 (246)
T ss_dssp             EEEESSSCEEEEEEEECS
T ss_pred             EEcCCCCCEEEEEEEecc
Confidence            999  7899999997643

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=99.57  E-value=1.1e-14  Score=120.47  Aligned_cols=91  Identities=8%  Similarity=0.068  Sum_probs=74.0

Q ss_pred             eccCCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCc
Q 022278           81 LSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA  160 (300)
Q Consensus        81 ~~~~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~  160 (300)
                      ....|... .....|.++..+ .|++.+++++|| ... .+|.++||+|||+|++++++ +|+++.|++||+++||++.+
T Consensus        36 ~~g~p~~~-~~~~~L~~~~~~-~~~~~~~~~~pG-~~~-~h~~~~E~~~VLeG~~~l~~-~g~~~~l~~GD~i~~p~g~~  110 (133)
T 2pyt_A           36 DGAEPHCV-GLTDLVTEQDGS-SMAAGFMQWDNA-FFP-WTLNYDEIDMVLEGELHVRH-EGETMIAKAGDVMFIPKGSS  110 (133)
T ss_dssp             GGGTTSCC-EEEEEECGGGTC-SSEEEEEEEEEE-EEE-EECSSEEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTCE
T ss_pred             cCCCCCce-EEEEEEecCCCC-cEEEEEEEECCC-Ccc-ccCCCCEEEEEEECEEEEEE-CCEEEEECCCcEEEECCCCE
Confidence            34455432 345556665444 899999999999 222 24678999999999999999 99999999999999999999


Q ss_pred             eEEeeCCeEEEEEEEe
Q 022278          161 HSLRAEGSATLVVFER  176 (300)
Q Consensus       161 H~~~N~~~a~vl~v~~  176 (300)
                      |.|+|+++++++|+..
T Consensus       111 h~~~~~~~~~~l~v~~  126 (133)
T 2pyt_A          111 IEFGTPTSVRFLYVAW  126 (133)
T ss_dssp             EEEEEEEEEEEEEEEE
T ss_pred             EEEEeCCCEEEEEEEc
Confidence            9999988999999964

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.56  E-value=1.4e-14  Score=125.06  Aligned_cols=78  Identities=12%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcC-CcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeec
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRY  178 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~g-g~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y  178 (300)
                      ..+.+++++++||+.+..|.|.+|||+|||+|++++++ + |+++.|++||++ ||++.+|+|+|  +++|+++|+..+.
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l-d~ge~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P~  154 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL-DDGAKRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIEA  154 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC-GGGCEEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEEC
T ss_pred             CCeEEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE-CCCeEEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcCC
Confidence            46788899999999998899999999999999999999 7 899999999999 99999999999  6899999998877


Q ss_pred             ccc
Q 022278          179 ASL  181 (300)
Q Consensus       179 ~~~  181 (300)
                      .|+
T Consensus       155 ~p~  157 (172)
T 3es1_A          155 PAY  157 (172)
T ss_dssp             CCC
T ss_pred             Cce
Confidence            664

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.53  E-value=4.7e-14  Score=115.65  Aligned_cols=88  Identities=20%  Similarity=0.282  Sum_probs=76.1

Q ss_pred             ceeEEEEee-CCCC-CcceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEE
Q 022278          204 EVFQLRKLL-PQAV-PFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYA  280 (300)
Q Consensus       204 ~~~~~~~l~-p~~~-~~~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~  280 (300)
                      +++..+.++ |.+. +..+.+..++++||+.++. |.|. ++|.+|||+|++.+.+||+++.+++||+++++++++|++.
T Consensus        39 g~~~~~~ll~p~~~~~~~~~~~~~~~~pg~~~~~-H~H~~~~E~~~Vl~G~~~~~i~~~~~~l~~Gd~i~i~~~~~H~~~  117 (133)
T 1o4t_A           39 GEVEMAHLLSKEAMHNKARLFARMKLPPGSSVGL-HKHEGEFEIYYILLGEGVFHDNGKDVPIKAGDVCFTDSGESHSIE  117 (133)
T ss_dssp             SEEEEEECSCTTTTTTSEEEEEEEEECTTCEEEE-EECCSEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCEEEEE
T ss_pred             CeEEEEEccChhhCCCceEEEEEEEECCCCccCc-eECCCccEEEEEEeCEEEEEECCEEEEeCCCcEEEECCCCcEEeE
Confidence            456666565 5544 4567788999999999986 6775 7899999999999999999999999999999999999999


Q ss_pred             ecCCccEEEEEE
Q 022278          281 ALGKTRTRYLLY  292 (300)
Q Consensus       281 n~G~e~~~fi~~  292 (300)
                      |.|+++++|++.
T Consensus       118 n~~~~~~~~l~v  129 (133)
T 1o4t_A          118 NTGNTDLEFLAV  129 (133)
T ss_dssp             CCSSSCEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999999999864

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.53  E-value=2.6e-14  Score=110.80  Aligned_cols=75  Identities=13%  Similarity=0.167  Sum_probs=67.8

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCCce-EEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEEee--CCeEEEEEEE
Q 022278          101 GSHFVMYLANMQENARSALPPHDVE-RFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE  175 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~gE-Ef~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~  175 (300)
                      +..++++.++++||+....|.|+++ |++||++|++++++ ++  +++.|++||++++|++.+|+++|  +++++++++.
T Consensus        15 ~~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v~   93 (97)
T 2fqp_A           15 NERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET-PEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIE   93 (97)
T ss_dssp             SSSEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE-TTEEEEEEECTTCCEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             CCeEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe-CCCCEEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEEE
Confidence            4589999999999998888888885 69999999999999 77  79999999999999999999999  6789999885


Q ss_pred             e
Q 022278          176 R  176 (300)
Q Consensus       176 ~  176 (300)
                      -
T Consensus        94 ~   94 (97)
T 2fqp_A           94 I   94 (97)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.52  E-value=3.8e-14  Score=116.20  Aligned_cols=103  Identities=9%  Similarity=0.156  Sum_probs=80.9

Q ss_pred             eEeCCCCeeeccCC----CCCcceEEEEecCC-C-CCcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcE
Q 022278           72 ALITPESHVLSPLP----EWTNTLGAYLITPA-M-GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVS  144 (300)
Q Consensus        72 av~~~e~~~~~~~p----~~~~~~~~~L~sp~-~-g~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~  144 (300)
                      .+++++++.....+    +..+...+.+++|. . ++.+++..++++||+..+.|.|. .+|++||++|++++++ ++++
T Consensus        19 ~v~r~~~~~~~~~~~~~~~~g~~~~~~ll~p~~~~~~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i-~~~~   97 (133)
T 1o4t_A           19 MVVRSSEITPERISNMRGGKGEVEMAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD-NGKD   97 (133)
T ss_dssp             CEEEGGGSCCEEEESGGGCSSEEEEEECSCTTTTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE-TTEE
T ss_pred             EEEEhhhCCEEEecCccCCCCeEEEEEccChhhCCCceEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEE-CCEE
Confidence            45555554433332    22223444477765 3 56788899999999887777787 5999999999999999 9999


Q ss_pred             EEeccCcEEEeCCCCceEEee--CCeEEEEEEE
Q 022278          145 SKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE  175 (300)
Q Consensus       145 ~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~  175 (300)
                      +.|++||++++|++.+|+++|  +++++++|+.
T Consensus        98 ~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~v~  130 (133)
T 1o4t_A           98 VPIKAGDVCFTDSGESHSIENTGNTDLEFLAVI  130 (133)
T ss_dssp             EEEETTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             EEeCCCcEEEECCCCcEEeEECCCCCEEEEEEE
Confidence            999999999999999999998  5789999885

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.51  E-value=9.1e-14  Score=112.68  Aligned_cols=89  Identities=15%  Similarity=0.224  Sum_probs=79.5

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      +++..+.|.+.+....+.+..++++||...+. |.|..++.+||++|++.+.++|+++.+++||++|++++++|++.|.|
T Consensus        32 ~g~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~-H~H~~~e~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~g~~H~~~~~~  110 (126)
T 1vj2_A           32 RGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDR-HSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDT  110 (126)
T ss_dssp             EEEEEEEEECTTTCSSEEEEEEEEEEEEEEEE-ECCSSCEEEEEEESEEEEECSSCEEEEETTEEEEECTTCCEEEECCS
T ss_pred             CCeEEEEEeCCCCCCCEEEEEEEECCCCcCCc-eeCCCcEEEEEEEeEEEEEECCEEEEECCCCEEEECCCCcEEeEeCC
Confidence            55677778765546678889999999999985 78888899999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEe
Q 022278          284 KTRTRYLLYK  293 (300)
Q Consensus       284 ~e~~~fi~~k  293 (300)
                      +++++|++.-
T Consensus       111 ~~~~~~l~v~  120 (126)
T 1vj2_A          111 DSEVEFLCLI  120 (126)
T ss_dssp             SSCEEEEEEE
T ss_pred             CCCEEEEEEE
Confidence            9999998764

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.51  E-value=1.2e-13  Score=117.21  Aligned_cols=88  Identities=14%  Similarity=0.173  Sum_probs=79.5

Q ss_pred             CCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-
Q 022278           87 WTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-  165 (300)
Q Consensus        87 ~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-  165 (300)
                      +.+...++|+++.. ..|++.+++++||+..+.|.|..+|++||++|++++++ +|+++.|++||++++|++.+|+++| 
T Consensus        28 ~~g~~~~~L~~~~~-~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v-~g~~~~l~~Gd~i~ip~~~~H~~~n~  105 (156)
T 3kgz_A           28 FQDVSRQLLFADPN-LACEWRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV-GETISDVAQGDLVFIPPMTWHQFRAN  105 (156)
T ss_dssp             SEEEEEEEEECCTT-CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTCCEEEECC
T ss_pred             cCCeEEEEEEcCCC-CcEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE-CCEEEEeCCCCEEEECCCCcEEeEeC
Confidence            34577888888764 78999999999999988888999999999999999999 9999999999999999999999998 


Q ss_pred             -CCeEEEEEEEe
Q 022278          166 -EGSATLVVFER  176 (300)
Q Consensus       166 -~~~a~vl~v~~  176 (300)
                       +++++++++..
T Consensus       106 g~~~~~~l~i~~  117 (156)
T 3kgz_A          106 RGDCLGFLCVVN  117 (156)
T ss_dssp             SSSCEEEEEEEE
T ss_pred             CCCCEEEEEEEe
Confidence             67899998854

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.51  E-value=9.9e-14  Score=112.47  Aligned_cols=91  Identities=19%  Similarity=0.239  Sum_probs=81.5

Q ss_pred             CCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEE
Q 022278           84 LPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL  163 (300)
Q Consensus        84 ~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~  163 (300)
                      .++..+...++|+++..+..|+++.++++||+..+.|.|+.+|++||++|++++.+ +++++.|++||++++|++.+|++
T Consensus        28 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i-~~~~~~l~~Gd~i~ip~g~~H~~  106 (126)
T 1vj2_A           28 TDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK-EQGEETVEEGFYIFVEPNEIHGF  106 (126)
T ss_dssp             SSSEEEEEEEEEECTTTCSSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC-SSCEEEEETTEEEEECTTCCEEE
T ss_pred             CCCCCCeEEEEEeCCCCCCCEEEEEEEECCCCcCCceeCCCcEEEEEEEeEEEEEE-CCEEEEECCCCEEEECCCCcEEe
Confidence            45556678888888877889999999999998887788999999999999999999 99999999999999999999999


Q ss_pred             ee--CCeEEEEEEE
Q 022278          164 RA--EGSATLVVFE  175 (300)
Q Consensus       164 ~N--~~~a~vl~v~  175 (300)
                      +|  +++++++++.
T Consensus       107 ~~~~~~~~~~l~v~  120 (126)
T 1vj2_A          107 RNDTDSEVEFLCLI  120 (126)
T ss_dssp             ECCSSSCEEEEEEE
T ss_pred             EeCCCCCEEEEEEE
Confidence            98  5688988884

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.50  E-value=5.1e-14  Score=109.08  Aligned_cols=74  Identities=11%  Similarity=-0.012  Sum_probs=67.2

Q ss_pred             cceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEeCC--EEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      ..+.+..++++||+.++. |+|..+ +.+|||+|++.+.++|  +.+.+++||.+|++++.+|++.|.|+++++||+.
T Consensus        16 ~~~~~~~~~~~Pg~~~~~-H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v   92 (97)
T 2fqp_A           16 ERVKVTEWRFPPGGETGW-HRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEI   92 (97)
T ss_dssp             SSEEEEEEEECTTCBCCS-EECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             CeEEEEEEEECCCCCCCC-EECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEE
Confidence            356788999999999996 677775 5999999999999998  8999999999999999999999999999999874

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.50  E-value=4.6e-13  Score=114.45  Aligned_cols=89  Identities=16%  Similarity=0.252  Sum_probs=79.6

Q ss_pred             CCcceEEEEecCCCC---CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEE
Q 022278           87 WTNTLGAYLITPAMG---SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL  163 (300)
Q Consensus        87 ~~~~~~~~L~sp~~g---~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~  163 (300)
                      +.+....+|+++..|   ..|++.+++++||+..+.|.|..+|++||++|++++++ +|+++.|++||++++|++.+|.+
T Consensus        36 ~~g~~~~~L~~~~~g~~~~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i-~~~~~~l~~Gd~i~ip~~~~H~~  114 (167)
T 3ibm_A           36 FSGARRQTLVGRPAGQEAPAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL-DDRVEPLTPLDCVYIAPHAWHQI  114 (167)
T ss_dssp             -CCEEEEEEECTTTTCCSSSEEEEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE-TTEEEEECTTCEEEECTTCCEEE
T ss_pred             CCCcEEEEEECCCCCCCCCcEEEEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCCcEEE
Confidence            356788889998873   58999999999999988888999999999999999999 99999999999999999999999


Q ss_pred             ee---CCeEEEEEEEe
Q 022278          164 RA---EGSATLVVFER  176 (300)
Q Consensus       164 ~N---~~~a~vl~v~~  176 (300)
                      +|   +++++++++..
T Consensus       115 ~n~~~~~~~~~l~i~~  130 (167)
T 3ibm_A          115 HATGANEPLGFLCIVD  130 (167)
T ss_dssp             EEESSSCCEEEEEEEE
T ss_pred             EeCCCCCCEEEEEEEe
Confidence            98   35789888854

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.49  E-value=1e-13  Score=112.39  Aligned_cols=84  Identities=13%  Similarity=0.176  Sum_probs=69.3

Q ss_pred             EEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEE
Q 022278           92 GAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSAT  170 (300)
Q Consensus        92 ~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~  170 (300)
                      +..+.+...++.+...+++++||+....|. +.+|++|||+|++++++ +|+++.|++||++++|++.+|+|+| +++++
T Consensus        28 ~g~v~s~~~~~~~~~~~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~-~g~~~~l~~GD~v~ip~g~~H~~~~~~~~~~  105 (119)
T 3lwc_A           28 VGNLVDERHGGPITIGYGRYAPGQSLTETM-AVDDVMIVLEGRLSVST-DGETVTAGPGEIVYMPKGETVTIRSHEEGAL  105 (119)
T ss_dssp             EEEC------CCCEEEEEEECTTCEEEEEC-SSEEEEEEEEEEEEEEE-TTEEEEECTTCEEEECTTCEEEEEEEEEEEE
T ss_pred             EEEeecCCCCCCEEEEEEEECCCCCcCccC-CCCEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCCEEEEEcCCCCeE
Confidence            334445556678999999999998776664 88999999999999999 9999999999999999999999998 48899


Q ss_pred             EEEEEee
Q 022278          171 LVVFERR  177 (300)
Q Consensus       171 vl~v~~~  177 (300)
                      ++|+..+
T Consensus       106 ~l~v~~P  112 (119)
T 3lwc_A          106 TAYVTYP  112 (119)
T ss_dssp             EEEEEEC
T ss_pred             EEEEECC
Confidence            9998654

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.49  E-value=1.2e-13  Score=110.95  Aligned_cols=74  Identities=18%  Similarity=0.192  Sum_probs=66.3

Q ss_pred             ceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEe-CCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEe
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  293 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  293 (300)
                      ++.+.+++++||+.++. |.|. .++.+|||+|++.+.+ ||+++.+++||+++++++++|++.|.|+++++||+.-
T Consensus        38 ~~~~~~~~~~pg~~~~~-H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~  113 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIAS-HVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVV  113 (125)
T ss_dssp             SCEEEEEEECTTCEECC-C-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEEECCCCcCCc-ccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEE
Confidence            35677899999999997 5666 5788999999999999 9999999999999999999999999999999999753

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.49  E-value=3.2e-13  Score=117.00  Aligned_cols=89  Identities=16%  Similarity=0.231  Sum_probs=78.6

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCc--ceeeccceEEEEEEeeEEEEeCC----EEEEccCCcEEEeCCCCce
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV--KEVHYNQHGLLLLEGQGIYRLGD----SWYPVQAGDVLWMAPFVPQ  277 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~--~~~H~~eh~~~iL~G~G~~~~~g----~~~~v~~GD~i~~~~~~~H  277 (300)
                      +++..+.|.+...+..+.+..++++||+..+.  +|+|..+|.+|||+|++.+.++|    +++.+++||+++++++++|
T Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~~~~~H  180 (198)
T 2bnm_A          101 DYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPH  180 (198)
T ss_dssp             TTEEEEECCCCTTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCE
T ss_pred             CceEEEeeccCCCCCcceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeCCCCce
Confidence            45566667776666778888999999999885  57787789999999999999999    9999999999999999999


Q ss_pred             eEEec-CCccEEEEEE
Q 022278          278 WYAAL-GKTRTRYLLY  292 (300)
Q Consensus       278 ~~~n~-G~e~~~fi~~  292 (300)
                      ++.|. |++++++++.
T Consensus       181 ~~~n~~~~~~~~~l~v  196 (198)
T 2bnm_A          181 AFTAAKGTGSAKLIAV  196 (198)
T ss_dssp             EEEESTTSCCEEEEEE
T ss_pred             EEEecCCCCCeEEEEE
Confidence            99999 9999999874

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.48  E-value=2.4e-13  Score=113.51  Aligned_cols=99  Identities=19%  Similarity=0.225  Sum_probs=83.2

Q ss_pred             CCCCCCcccCCceeEEEEeeCCCC-CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEE-EEccCCcEEE
Q 022278          193 TDKQPLLETPGEVFQLRKLLPQAV-PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW-YPVQAGDVLW  270 (300)
Q Consensus       193 ~~d~~~~~~~g~~~~~~~l~p~~~-~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~-~~v~~GD~i~  270 (300)
                      .++.|+..+.| ++.++.|.+.+. ...+.+..++++||..++. |.|..++.+||++|++.+.++|+. +.+++||++|
T Consensus        21 ~~~~~~~~~~g-~~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~-H~H~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~   98 (147)
T 2f4p_A           21 GSKGSSDFFTG-NVWVKMLVTDENGVFNTQVYDVVFEPGARTHW-HSHPGGQILIVTRGKGFYQERGKPARILKKGDVVE   98 (147)
T ss_dssp             CEECCTTTEES-CEEEEEEECCTTCSSSCEEEEEEECTTCEECS-EECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEE
T ss_pred             ccCCCcCEEEC-cEEEEEEECCCCCCCcEEEEEEEECCCCccCc-eECCCceEEEEEeCEEEEEECCEEEEEECCCCEEE
Confidence            33444444444 457777777654 5678888999999999986 788889999999999999999998 9999999999


Q ss_pred             eCCCCceeEEecCCccEEEEEEe
Q 022278          271 MAPFVPQWYAALGKTRTRYLLYK  293 (300)
Q Consensus       271 ~~~~~~H~~~n~G~e~~~fi~~k  293 (300)
                      ++++++|++.|.|++++++++.-
T Consensus        99 ip~~~~H~~~n~~~~~~~~l~v~  121 (147)
T 2f4p_A           99 IPPNVVHWHGAAPDEELVHIGIS  121 (147)
T ss_dssp             ECTTCCEEEEEBTTBCEEEEEEE
T ss_pred             ECCCCcEEeEeCCCCCEEEEEEE
Confidence            99999999999999999998764

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.48  E-value=2.3e-12  Score=126.49  Aligned_cols=192  Identities=10%  Similarity=0.088  Sum_probs=134.4

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc-C--Cc-----------------------------------
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA-S--GV-----------------------------------  143 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~-g--g~-----------------------------------  143 (300)
                      ..+.+..+++.||+-..+|.|+..+++||++|++.+.+. .  -+                                   
T Consensus        41 ~gvs~~r~~i~p~Gl~lPh~~~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (466)
T 3kgl_A           41 SGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQG  120 (466)
T ss_dssp             HTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC-----------------------
T ss_pred             CCeEEEEEEECCCCEeCCeeCCCCeEEEEEeCeEEEEEecCCCcchhhcccccccccccccccccccccccccccccccc
Confidence            578889999999998888878899999999999988652 1  12                                   


Q ss_pred             -------------------------EEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeecccc---CCC-Ccceeecc
Q 022278          144 -------------------------SSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASL---ENH-ITEQIVGS  192 (300)
Q Consensus       144 -------------------------~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~---~g~-~p~~~~~~  192 (300)
                                               .+.|++||.+++|+|.+|++.|  +++++++++.....+.   ++. ..-.+.|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~d~~n~~nQld~~~~~F~LaG~  200 (466)
T 3kgl_A          121 QGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGN  200 (466)
T ss_dssp             ------------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEEESSSTTCCSCSSCCEEESSCC
T ss_pred             ccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEEEEcCCCcccccCCceeeeEecCC
Confidence                                     2489999999999999999999  5788888887654331   110 00011111


Q ss_pred             CC---------------C---------------C--------CCcc----------------------------cCC---
Q 022278          193 TD---------------K---------------Q--------PLLE----------------------------TPG---  203 (300)
Q Consensus       193 ~~---------------d---------------~--------~~~~----------------------------~~g---  203 (300)
                      -+               +               +        ...+                            .+|   
T Consensus       201 ~~~~~~~~~~~~~~~~~ni~sGF~~e~La~Af~v~~e~~~kL~~~q~~~G~Iv~v~~~l~~~~p~~~~~~~~~~~~glee  280 (466)
T 3kgl_A          201 NPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRSQRPQEEVNGLEE  280 (466)
T ss_dssp             BTTCCTTSTTCTTCCBCCGGGGSCHHHHHHHHTSCHHHHHHHTCTTCCSCSEEECCSCCCCCCCCC--------------
T ss_pred             CccccccccccccccCCCccccCCHHHHHHHhCCCHHHHHHHhccccCceeEEEecCcccccCCcccccccccccCCccc
Confidence            10               0               0        0000                            000   


Q ss_pred             -----------------------ceeEEEEeeCCCCC--c--ceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEE
Q 022278          204 -----------------------EVFQLRKLLPQAVP--F--DFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYR  255 (300)
Q Consensus       204 -----------------------~~~~~~~l~p~~~~--~--~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~  255 (300)
                                             ++ .++.+.+.+..  .  ++.+..+.|+||+..+. |.|+.. +..||++|++.+.
T Consensus       281 ~~c~~r~~~Ni~~p~~~d~~~~~gG-~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~P-HwHp~A~Ei~yVl~G~~rv~  358 (466)
T 3kgl_A          281 TICSARCTDNLDDPSNADVYKPQLG-YISTLNSYDLPILRFLRLSALRGSIRQNAMVLP-QWNANANAVLYVTDGEAHVQ  358 (466)
T ss_dssp             CCSSCCCEEETTCGGGEEEEETTTE-EEEEECTTTCTTHHHHTCEEEEEEEETTEEEEE-EEESSCCEEEEEEESEEEEE
T ss_pred             cccceeccccccCcccCCcccCCCc-eEEEechhhCcccccCceeeEEEEeecCcEeee-eECCCCCEEEEEEeceEEEE
Confidence                                   00 11112222221  2  68899999999999986 788665 7899999999876


Q ss_pred             e---CC-EEE--EccCCcEEEeCCCCceeEEecCCccEEEEEEeecC
Q 022278          256 L---GD-SWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  296 (300)
Q Consensus       256 ~---~g-~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~n  296 (300)
                      +   +| +.+  .|++||+.++|.|.+|.. |.|+++++||.+++--
T Consensus       359 ~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~-~ag~e~~~~l~~f~s~  404 (466)
T 3kgl_A          359 VVNDNGDRVFDGQVSQGQLLSIPQGFSVVK-RATSEQFRWIEFKTNA  404 (466)
T ss_dssp             EECTTSCEEEEEEEETTCEEEECTTCEEEE-EECSSEEEEEEEESSS
T ss_pred             EEeCCCcEEEEeEecCCcEEEECCCCeEEE-EcCCCCEEEEEEECCC
Confidence            4   23 334  599999999999999976 8899999999998643

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.48  E-value=2.4e-12  Score=126.29  Aligned_cols=192  Identities=10%  Similarity=0.110  Sum_probs=130.9

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc-C--Cc-----------------------------------
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA-S--GV-----------------------------------  143 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~-g--g~-----------------------------------  143 (300)
                      +.+....++|+||+-..+|.|...|.+||++|+..+.+. .  .+                                   
T Consensus        48 ~gvs~~R~~i~P~gl~~Ph~h~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  127 (465)
T 3qac_A           48 AGVSVIRRTIEPHGLLLPSFTSAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQ  127 (465)
T ss_dssp             HTCEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCC------------------------------CCC
T ss_pred             cceEEEEEEEcCCcCcccEEcCCCEEEEEEECcEEEEEecCCCCceeecchhcccccccccccccccccccccccccccc
Confidence            478889999999998888878999999999999988751 2  23                                   


Q ss_pred             ---EEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeecccc-------------CC-CCc------------------
Q 022278          144 ---SSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASL-------------EN-HIT------------------  186 (300)
Q Consensus       144 ---~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~-------------~g-~~p------------------  186 (300)
                         .+.+++||.+++|+|..|.+.|  ++++.++.+...-.+.             .| ..|                  
T Consensus       128 hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n~~nqld~~~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~  207 (465)
T 3qac_A          128 HQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGKPQQEHSGEHQFSRESRRGERN  207 (465)
T ss_dssp             CCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTTSTTCCSCSSSCCEEESSSCCCCSCC--------------C
T ss_pred             ccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCCcccccccccceeEEecCCCcccccccccccccccccccc
Confidence               3489999999999999999999  6788888775543221             11 011                  


Q ss_pred             -ceeec-----------cCC-----------C-------------C--CCcc---------------cCC-c----ee--
Q 022278          187 -EQIVG-----------STD-----------K-------------Q--PLLE---------------TPG-E----VF--  206 (300)
Q Consensus       187 -~~~~~-----------~~~-----------d-------------~--~~~~---------------~~g-~----~~--  206 (300)
                       .-+++           +++           |             +  |...               .+| +    ..  
T Consensus       208 ~~ni~sgF~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv~~~l~~~~p~~~~~~~~~~~~~~~~~~~nglee~~c~~~l  287 (465)
T 3qac_A          208 TGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQEGLHVIKPPSRAWEEREQGSRGSRYLPNGVEETICSARL  287 (465)
T ss_dssp             CCCGGGGSCHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC-CCCC----------------------------CTTTSCC
T ss_pred             ccchhhcCCHHHHHHHhCCCHHHHHHhhhccccceeEEEecCcccccCCcccchhhhhcccccccccCCCccccccceec
Confidence             00000           000           0             0  0000               001 0    00  


Q ss_pred             ------------------EEEEeeCCCCC----cceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEe---CC-E
Q 022278          207 ------------------QLRKLLPQAVP----FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL---GD-S  259 (300)
Q Consensus       207 ------------------~~~~l~p~~~~----~~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~---~g-~  259 (300)
                                        .+..+.+.+..    -++.+.++.|+||+..+. |.|+.. +..||++|+|.+.+   +| +
T Consensus       288 ~~ni~~p~~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~~P-HwHp~A~Ei~yV~~G~~~v~vV~~~g~~  366 (465)
T 3qac_A          288 AVNVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAP-HYNLNAHNIMYCVRGRGRIQIVNDQGQS  366 (465)
T ss_dssp             EEETTCTTTCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEE-EEESSCCEEEEEEEEEEEEEEECTTSCE
T ss_pred             cccccccccCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcEeee-EECCCCCEEEEEEeCCEEEEEEeCCCcE
Confidence                              11112222211    136889999999999986 788766 78899999998763   23 3


Q ss_pred             EE--EccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278          260 WY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  295 (300)
Q Consensus       260 ~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~  295 (300)
                      .+  .+++||+.++|.|.+|... .|+++++||.+++-
T Consensus       367 ~f~~~l~~GDVfvvP~g~~h~~~-ag~e~~~~l~f~~s  403 (465)
T 3qac_A          367 VFDEELSRGQLVVVPQNFAIVKQ-AFEDGFEWVSFKTS  403 (465)
T ss_dssp             EEEEEEETTCEEEECTTCEEEEE-EEEEEEEEEEEESS
T ss_pred             EEEEEecCCeEEEECCCcEEEEE-cCCCCeEEEEEecC
Confidence            44  4999999999999999875 68999999999853

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.48  E-value=1.1e-13  Score=113.37  Aligned_cols=93  Identities=20%  Similarity=0.275  Sum_probs=82.4

Q ss_pred             CCCCcceEEEEecCCCC-CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEE--EcCCcEEEeccCcEEEeCCCCce
Q 022278           85 PEWTNTLGAYLITPAMG-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLT--NASGVSSKLMVDSYTYLPPNFAH  161 (300)
Q Consensus        85 p~~~~~~~~~L~sp~~g-~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~--v~gg~~~~L~~Gds~yfpa~~~H  161 (300)
                      ++..+...++++++..+ ..|.+..++++||+..+.|.|+.+|++||++|++++.  + +|+++.|++||++++|++.+|
T Consensus        19 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~-~~~~~~l~~Gd~~~ip~~~~H   97 (145)
T 3ht1_A           19 PGAKETTHRKLIDTPDGADRFVLTEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPD-QGRTEEVGPGEAIFIPRGEPH   97 (145)
T ss_dssp             TTCEEEEEEEEECGGGTCCSEEEEEEEEEEEEECCCEECSSCEEEEEEEECEEEEEGG-GTEEEEECTTCEEEECTTCCB
T ss_pred             CCCCCcEEEEEEccCCCCCcEEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEeE-CCEEEEECCCCEEEECCCCeE
Confidence            45566788889988766 5899999999999998888899999999999999999  9 999999999999999999999


Q ss_pred             EEee--CCeEEEEEEEeec
Q 022278          162 SLRA--EGSATLVVFERRY  178 (300)
Q Consensus       162 ~~~N--~~~a~vl~v~~~y  178 (300)
                      +++|  +++++++++..+-
T Consensus        98 ~~~~~~~~~~~~l~i~~~~  116 (145)
T 3ht1_A           98 GFVTGPGQTCRFLVVAPCE  116 (145)
T ss_dssp             EEECCTTCCEEEEEEEESC
T ss_pred             EeEcCCCCCEEEEEEECCC
Confidence            9999  6788988886443

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.48  E-value=3.6e-13  Score=114.53  Aligned_cols=89  Identities=12%  Similarity=0.165  Sum_probs=76.4

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCC--CceeEEecC
Q 022278          207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPF--VPQWYAALG  283 (300)
Q Consensus       207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~--~~H~~~n~G  283 (300)
                      ..+.|.+......+.+.+++++||+.....|.|.. +|.+|||+|++.+.++|+++.+++||+++++++  ++|++.|.|
T Consensus        30 ~~~~l~~~~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~  109 (163)
T 3i7d_A           30 SSLRLGDAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQGEHPMVPGDCAAFPAGDPNGHQFVNRT  109 (163)
T ss_dssp             EEEEHHHHTTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCCCBEEECCS
T ss_pred             EEEEcccCCCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCEEEEeCCCCEEEECCCCCcceEEEECC
Confidence            44445565556688999999999997743467766 699999999999999999999999999999999  999999999


Q ss_pred             CccEEEEEEeec
Q 022278          284 KTRTRYLLYKDV  295 (300)
Q Consensus       284 ~e~~~fi~~kd~  295 (300)
                      +++++||+...-
T Consensus       110 ~~~~~~l~v~~p  121 (163)
T 3i7d_A          110 DAPATFLVVGTR  121 (163)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEEEECC
Confidence            999999987643

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.47  E-value=3.1e-13  Score=113.83  Aligned_cols=82  Identities=18%  Similarity=0.356  Sum_probs=71.6

Q ss_pred             CCCCCcceEEEEEEecCCc-ccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCC-CceeEEecCCccEEEE
Q 022278          213 PQAVPFDFNIHIMDFQPGD-FLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPF-VPQWYAALGKTRTRYL  290 (300)
Q Consensus       213 p~~~~~~~~~~~~tl~PG~-~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~-~~H~~~n~G~e~~~fi  290 (300)
                      +......+.+.+++++||+ ..+.|.|+..+|.+|||+|++.+.++|+++.+++||+++++++ ++|++.|.|+++++||
T Consensus        39 ~~~g~~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l  118 (162)
T 3l2h_A           39 DAVGLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCL  118 (162)
T ss_dssp             HHHTCCSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEE
T ss_pred             CCCCCCeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEE
Confidence            3344467889999999999 5887444378899999999999999999999999999999998 9999999999999998


Q ss_pred             EEee
Q 022278          291 LYKD  294 (300)
Q Consensus       291 ~~kd  294 (300)
                      +...
T Consensus       119 ~v~~  122 (162)
T 3l2h_A          119 VIGQ  122 (162)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            8654

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.47  E-value=5.4e-13  Score=107.41  Aligned_cols=86  Identities=16%  Similarity=0.241  Sum_probs=74.9

Q ss_pred             eEEEEeeC-CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCC
Q 022278          206 FQLRKLLP-QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       206 ~~~~~l~p-~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      +..+.+.| .+....+.+...+++||...+. |.|...|.+||++|++.+.+||+.+.+++||++++++|++|++.|.|+
T Consensus        19 ~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~-H~H~~~Ei~~v~~G~~~~~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~   97 (128)
T 4i4a_A           19 LDGSRLLPWEGLNTPFGGAWCIVRPETKSFR-HSHNEYELFIVIQGNAIIRINDEDFPVTKGDLIIIPLDSEHHVINNNQ   97 (128)
T ss_dssp             EEEEECCCCTTCCCSSEEEEEEECTTEECCC-BCCSSEEEEEEEESEEEEEETTEEEEEETTCEEEECTTCCEEEEECSS
T ss_pred             CceEeecCccccCCCcEEEEEEECCCCccCC-EecCCeEEEEEEeCEEEEEECCEEEEECCCcEEEECCCCcEEeEeCCC
Confidence            34455666 3445678888999999999986 677888999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEE
Q 022278          285 TRTRYLLY  292 (300)
Q Consensus       285 e~~~fi~~  292 (300)
                      ++++|++.
T Consensus        98 ~~~~~~~i  105 (128)
T 4i4a_A           98 EDFHFYTI  105 (128)
T ss_dssp             SCEEEEEE
T ss_pred             CCEEEEEE
Confidence            99988753

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=99.46  E-value=1.7e-13  Score=115.77  Aligned_cols=100  Identities=9%  Similarity=0.088  Sum_probs=80.6

Q ss_pred             eCCCCeeeccCCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEE
Q 022278           74 ITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYT  153 (300)
Q Consensus        74 ~~~e~~~~~~~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~  153 (300)
                      ++.++++....|+- +..+..+.++..+..|...+++++ ++... ..+..+|++|||+|++++++ +|+++.|++||++
T Consensus        37 ~~~~er~~~G~p~~-~v~i~~l~s~~~~~~~s~g~~~~e-~~~~~-~~~~~eE~~yVLeG~~~l~i-~g~~~~l~~GD~i  112 (151)
T 4axo_A           37 VSESDRLDTGNPSD-VVYTKDLFTLEESPRLGCGMMEMK-ETTFD-WTLNYDEIDYVIDGTLDIII-DGRKVSASSGELI  112 (151)
T ss_dssp             CCGGGBCCCSCTTC-CEEEEECSCTTTCSSCEEEEEEEE-EEEEE-EECSSEEEEEEEEEEEEEEE-TTEEEEEETTCEE
T ss_pred             ccchhccccCCCCC-CEEEEEeecCCCCCcEEEEEEEEc-Ccccc-EeCCCcEEEEEEEeEEEEEE-CCEEEEEcCCCEE
Confidence            33445555555653 366667888777778999999887 43322 25789999999999999999 9999999999999


Q ss_pred             EeCCCCceEEeeCCeEEEEEEEee
Q 022278          154 YLPPNFAHSLRAEGSATLVVFERR  177 (300)
Q Consensus       154 yfpa~~~H~~~N~~~a~vl~v~~~  177 (300)
                      |||+|.+|+|+|.++++++||..+
T Consensus       113 ~iP~G~~h~~~n~~~a~~l~V~~P  136 (151)
T 4axo_A          113 FIPKGSKIQFSVPDYARFIYVTYP  136 (151)
T ss_dssp             EECTTCEEEEEEEEEEEEEEEEEC
T ss_pred             EECCCCEEEEEeCCCEEEEEEECC
Confidence            999999999999889999999653

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.46  E-value=1.9e-13  Score=109.27  Aligned_cols=73  Identities=15%  Similarity=0.167  Sum_probs=67.1

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEE
Q 022278          101 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  174 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v  174 (300)
                      +.++++..++++||+..+.|.|+++|++||++|++++++ +|+++.|++||++++|++.+|+++|.++++++++
T Consensus        33 ~~~~~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~  105 (114)
T 3fjs_A           33 EHRLEVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV-DGAQRRLHQGDLLYLGAGAAHDVNAITNTSLLVT  105 (114)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE-TTEEEEECTTEEEEECTTCCEEEEESSSEEEEEE
T ss_pred             CCCEEEEEEEECCCCccCceeCCCcEEEEEEECEEEEEE-CCEEEEECCCCEEEECCCCcEEEEeCCCcEEEEE
Confidence            457899999999999888888999999999999999999 9999999999999999999999999777776664

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.46  E-value=3.4e-13  Score=108.37  Aligned_cols=95  Identities=12%  Similarity=0.097  Sum_probs=77.5

Q ss_pred             cCCCCCCcccCC-ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEE
Q 022278          192 STDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLW  270 (300)
Q Consensus       192 ~~~d~~~~~~~g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~  270 (300)
                      .++++++..... .++..+.+ .   +..+.+..++++||+.++. |.|..+|.+|||+|++.+.++|+.+.+++||++|
T Consensus        16 ~~~~~~~~~~~~~~G~~~~~~-~---~~~~~~~~~~~~pg~~~~~-H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~   90 (126)
T 4e2g_A           16 FYDLTEVRSFSPLPGFAMQAI-Q---GKNLMLNWVRIEPNTEMPA-HEHPHEQAGVMLEGTLELTIGEETRVLRPGMAYT   90 (126)
T ss_dssp             EEEGGGSCCBCSSTTEEEEEE-E---CSSCEEEEEEECTTCEEEE-ECCSSEEEEEEEEECEEEEETTEEEEECTTEEEE
T ss_pred             hhhcccceecccCCCeEEEEE-e---CCCeEEEEEEECCCCcCCC-ccCCCceEEEEEEeEEEEEECCEEEEeCCCCEEE
Confidence            356666666542 34444444 2   2357788999999999986 7888899999999999999999999999999999


Q ss_pred             eCCCCceeEEecCCccEEEEEE
Q 022278          271 MAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       271 ~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      ++++++|++.|.|+ ++++|..
T Consensus        91 ip~~~~H~~~~~~~-~~~~l~v  111 (126)
T 4e2g_A           91 IPGGVRHRARTFED-GCLVLDI  111 (126)
T ss_dssp             ECTTCCEEEECCTT-CEEEEEE
T ss_pred             ECCCCcEEeEECCC-CEEEEEE
Confidence            99999999999998 7777654

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.46  E-value=2.3e-13  Score=108.20  Aligned_cols=76  Identities=12%  Similarity=0.197  Sum_probs=69.5

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEE-EccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWY-PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  295 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~-~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~  295 (300)
                      .+.+..++++||...+. |.|..++.+||++|++.+.++|+.+ .+++||++|+++|++|++.|.|+++++|++.+--
T Consensus        26 ~~~~~~~~~~pg~~~~~-H~H~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~  102 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPK-HYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAP  102 (117)
T ss_dssp             SCEEEEEEEETTCBCCC-EECSSCEEEEEEESEEEEEETTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECS
T ss_pred             ceEEEEEEECCCCcCCC-EeCCCcEEEEEEeCEEEEEECCEEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECC
Confidence            45677899999999986 7888889999999999999999999 9999999999999999999999999999988533

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.46  E-value=2.4e-13  Score=114.58  Aligned_cols=85  Identities=19%  Similarity=0.277  Sum_probs=74.1

Q ss_pred             EEEecCCCC-CcEEEEEEEEcCCCc-CCCCCC-CceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC-CceEEee--C
Q 022278           93 AYLITPAMG-SHFVMYLANMQENAR-SALPPH-DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN-FAHSLRA--E  166 (300)
Q Consensus        93 ~~L~sp~~g-~~f~~~lv~l~PG~~-~~~~~h-~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~-~~H~~~N--~  166 (300)
                      ...+++..| ..|++++++++||+. .+.|.| ..+|++||++|++++++ +++++.|++||++++|++ .+|+++|  +
T Consensus        34 ~~~l~~~~g~~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~-~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~  112 (162)
T 3l2h_A           34 NKSLGDAVGLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM-ENDQYPIAPGDFVGFPCHAAAHSISNDGT  112 (162)
T ss_dssp             EEEHHHHHTCCSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE-TTEEEEECTTCEEEECTTSCCEEEECCSS
T ss_pred             EEEccCCCCCCeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE-CCEEEEeCCCCEEEECCCCceEEeEeCCC
Confidence            344555555 589999999999994 677767 88999999999999999 999999999999999998 9999999  6


Q ss_pred             CeEEEEEEEeec
Q 022278          167 GSATLVVFERRY  178 (300)
Q Consensus       167 ~~a~vl~v~~~y  178 (300)
                      ++++++|+..+.
T Consensus       113 ~~~~~l~v~~p~  124 (162)
T 3l2h_A          113 ETLVCLVIGQRL  124 (162)
T ss_dssp             SCEEEEEEEECC
T ss_pred             CCEEEEEEECCC
Confidence            889999997654

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.46  E-value=3.4e-13  Score=107.88  Aligned_cols=76  Identities=13%  Similarity=0.100  Sum_probs=69.4

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  295 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~  295 (300)
                      .+.+..++++||..++. |.|.+++.+|||+|++.+.+||+++.+++||++|++++++|++.|.++..+..++.++-
T Consensus        35 ~~~v~~~~l~~G~~~~~-H~H~~~e~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~~v~p~  110 (114)
T 3fjs_A           35 RLEVMRMVLPAGKQVGS-HSVAGPSTIQCLEGEVEIGVDGAQRRLHQGDLLYLGAGAAHDVNAITNTSLLVTVVLVD  110 (114)
T ss_dssp             TEEEEEEEECTTCEEEE-ECCSSCEEEEEEESCEEEEETTEEEEECTTEEEEECTTCCEEEEESSSEEEEEEEECC-
T ss_pred             CEEEEEEEECCCCccCc-eeCCCcEEEEEEECEEEEEECCEEEEECCCCEEEECCCCcEEEEeCCCcEEEEEEEeCC
Confidence            56788999999999996 78888999999999999999999999999999999999999999999988888777654

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.45  E-value=4e-13  Score=115.03  Aligned_cols=89  Identities=11%  Similarity=0.097  Sum_probs=79.5

Q ss_pred             CCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-
Q 022278           87 WTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-  165 (300)
Q Consensus        87 ~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-  165 (300)
                      +++...++|+++.. ..|.+.+++++||+..+.|.|..+|++||++|++++++ +|+++.|++||++++|++.+|.++| 
T Consensus        37 ~~gv~~r~L~~~~~-~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v-~g~~~~l~~GD~i~ip~g~~H~~~n~  114 (166)
T 3jzv_A           37 FRSVTRQVLFSGNG-LTGELRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV-GRAVSAVAPYDLVTIPGWSWHQFRAP  114 (166)
T ss_dssp             CEEEEEEEEECCTT-CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE-TTEEEEECTTCEEEECTTCCEEEECC
T ss_pred             cCCeEEEEEECCCC-CeEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE-CCEEEEeCCCCEEEECCCCcEEeEeC
Confidence            45577788887664 68999999999999988888999999999999999999 9999999999999999999999998 


Q ss_pred             -CCeEEEEEEEee
Q 022278          166 -EGSATLVVFERR  177 (300)
Q Consensus       166 -~~~a~vl~v~~~  177 (300)
                       +++++++++...
T Consensus       115 ~~~~~~~l~i~~~  127 (166)
T 3jzv_A          115 ADEALGFLCMVNA  127 (166)
T ss_dssp             TTSCEEEEEEEES
T ss_pred             CCCCEEEEEEEcc
Confidence             678999988654

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.45  E-value=2.8e-13  Score=115.25  Aligned_cols=87  Identities=21%  Similarity=0.318  Sum_probs=74.6

Q ss_pred             eEEEEecCCCC-CcEEEEEEEEcCCCcC-CCCCCCc-eEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC--CceEEee
Q 022278           91 LGAYLITPAMG-SHFVMYLANMQENARS-ALPPHDV-ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA  165 (300)
Q Consensus        91 ~~~~L~sp~~g-~~f~~~lv~l~PG~~~-~~~~h~g-EEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~--~~H~~~N  165 (300)
                      ..+.++++..+ ..|++++++++||+.. ..|.|.+ ||++|||+|++++++ +++++.|++||++++|++  .+|+++|
T Consensus        29 ~~~~~l~~~~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~-~~~~~~l~~GD~i~ip~~~~~~H~~~n  107 (163)
T 3i7d_A           29 RSSLRLGDAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD-DQGEHPMVPGDCAAFPAGDPNGHQFVN  107 (163)
T ss_dssp             EEEEEHHHHTTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE-TTEEEEECTTCEEEECTTCCCCBEEEC
T ss_pred             eEEEEcccCCCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE-CCEEEEeCCCCEEEECCCCCcceEEEE
Confidence            34555555555 6899999999999966 5677776 799999999999999 999999999999999999  9999999


Q ss_pred             --CCeEEEEEEEeec
Q 022278          166 --EGSATLVVFERRY  178 (300)
Q Consensus       166 --~~~a~vl~v~~~y  178 (300)
                        +++++++++..+-
T Consensus       108 ~~~~~~~~l~v~~p~  122 (163)
T 3i7d_A          108 RTDAPATFLVVGTRT  122 (163)
T ss_dssp             CSSSCEEEEEEEECC
T ss_pred             CCCCCEEEEEEECCC
Confidence              6789999996543

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.45  E-value=4.7e-13  Score=122.72  Aligned_cols=88  Identities=15%  Similarity=0.160  Sum_probs=78.6

Q ss_pred             CcceEEEEecCCCCCcEEEEEEEEcCCCcCCC-CCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-
Q 022278           88 TNTLGAYLITPAMGSHFVMYLANMQENARSAL-PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-  165 (300)
Q Consensus        88 ~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~-~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-  165 (300)
                      .+...+++.++..+..|++++++++||+..+. |.|..+|++|||+|++++.+ +|+++.|++||+++||++.+|.++| 
T Consensus       166 ~g~~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i-~~~~~~l~~GD~i~i~~~~~H~~~n~  244 (274)
T 1sef_A          166 TDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL-DNEWYPVEKGDYIFMSAYVPQAAYAV  244 (274)
T ss_dssp             TTEEEEECSCSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE-TTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred             CCeEEEEeCCcccCCCEEEEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCCCEEEEeC
Confidence            34567777777778899999999999998877 88999999999999999999 9999999999999999999999998 


Q ss_pred             -C-CeEEEEEEEe
Q 022278          166 -E-GSATLVVFER  176 (300)
Q Consensus       166 -~-~~a~vl~v~~  176 (300)
                       + ++++++++..
T Consensus       245 ~~~~~~~~l~~~~  257 (274)
T 1sef_A          245 GREEPLMYVYSKD  257 (274)
T ss_dssp             CSSSCEEEEEEEE
T ss_pred             CCCCCEEEEEEEc
Confidence             5 7789888843

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.45  E-value=4.2e-13  Score=104.81  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             cceEEEEEEecCCcccCcc-eeec-cceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          218 FDFNIHIMDFQPGDFLNVK-EVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~-~~H~-~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      ..+.+..++++||..++.| |.|. .++.+||++|++.+.++|+++.+++||+++++++++|++.|.|++++++++.
T Consensus        19 ~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v   95 (113)
T 2gu9_A           19 RQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNF   95 (113)
T ss_dssp             TTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            3577889999999998864 3676 7899999999999999999999999999999999999999999999998876

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.45  E-value=4.1e-13  Score=102.97  Aligned_cols=85  Identities=15%  Similarity=0.175  Sum_probs=72.1

Q ss_pred             eeEEEEeeCCCCCcceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          205 VFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       205 ~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      ++..+.+.+   ...+.+..++++||..++. |.|. .++.+||++|++.+.++|+++.+++||++++++|++|++.|.|
T Consensus        16 ~~~~~~~~~---~~~~~~~~~~~~pg~~~~~-H~H~~~~e~~~v~~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~   91 (105)
T 1v70_A           16 KMAKIPVFQ---SERMLYDLYALLPGQAQKV-HVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPHGVRNES   91 (105)
T ss_dssp             SCEEEEEEE---ETTEEEEEEEECTTCEEEE-ECCSSCEEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCEEEECCS
T ss_pred             ccccceecC---CCceEEEEEEECCCCcCCc-cCCCCCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEeEeCC
Confidence            344455553   2346778899999999986 6676 4689999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEe
Q 022278          284 KTRTRYLLYK  293 (300)
Q Consensus       284 ~e~~~fi~~k  293 (300)
                      ++++++++.-
T Consensus        92 ~~~~~~~~v~  101 (105)
T 1v70_A           92 ASPALLLVVT  101 (105)
T ss_dssp             SSCEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999998764

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.44  E-value=4.2e-12  Score=123.39  Aligned_cols=193  Identities=14%  Similarity=0.117  Sum_probs=128.6

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc---CCcEEEeccCcEEEeCCCCceEEee-C--CeEEEEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA---SGVSSKLMVDSYTYLPPNFAHSLRA-E--GSATLVVFE  175 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~---gg~~~~L~~Gds~yfpa~~~H~~~N-~--~~a~vl~v~  175 (300)
                      +.+....+++.|++-..+|....+|++||++|++.+.+.   +.+++.|++||.++||+|..|.+.| +  +..+++.+.
T Consensus        42 ~~~~l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~  121 (418)
T 3s7i_A           42 QNHRIVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKIS  121 (418)
T ss_dssp             TTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             cceEEEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEee
Confidence            567777889999988877655789999999999998762   2357899999999999999999999 3  344555432


Q ss_pred             eecc-c-------cCC-CCcceeeccCC----------------------------------------------------
Q 022278          176 RRYA-S-------LEN-HITEQIVGSTD----------------------------------------------------  194 (300)
Q Consensus       176 ~~y~-~-------~~g-~~p~~~~~~~~----------------------------------------------------  194 (300)
                      ..-. |       +.| ..|..+++..+                                                    
T Consensus       122 ~~s~~pg~~~~f~laG~~~~~s~~~gf~~evLa~af~v~~~~v~kl~~~~~~~~~~~~~~~~~~~~~~~~q~~g~Iv~~~  201 (418)
T 3s7i_A          122 MPVNTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWSTRSSENNEGVIVKVS  201 (418)
T ss_dssp             EESSBTTBCCEECSSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCC--------------------CCCSEEECC
T ss_pred             cCcCCCCccceeeccCCcchhHHhhcCCHHHHHHHHCcCHHHHHhhhcccccccccccccccccccccccccCCceEEcC
Confidence            1110 1       111 00000111000                                                    


Q ss_pred             -----------------CCCCc-------------c-c--CCceeEEEEeeCCCC-C----cceEEEEEEecCCcccCcc
Q 022278          195 -----------------KQPLL-------------E-T--PGEVFQLRKLLPQAV-P----FDFNIHIMDFQPGDFLNVK  236 (300)
Q Consensus       195 -----------------d~~~~-------------~-~--~g~~~~~~~l~p~~~-~----~~~~~~~~tl~PG~~~p~~  236 (300)
                                       ..+..             + +  .+|.  +..+.+.+. .    -++.+.+.+|+||+-.+. 
T Consensus       202 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~nl~~~~p~~~n~~G~--~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~P-  278 (418)
T 3s7i_A          202 KEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDLSNNFGK--LFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLP-  278 (418)
T ss_dssp             HHHHHHHHTTCBC--------CTTCCCCEETTCSCCSEEETTEE--EEEECSBTTBHHHHHHTCEEEEEEECTTEEEEE-
T ss_pred             hhhhhhccccccccCCCCcCcccCCCcccccccCCCceeCCCCe--EEEechHHcchhhccCCeeEEEEEecCCceeCc-
Confidence                             00000             0 0  0121  222333333 1    247899999999999986 


Q ss_pred             eeecc-ceEEEEEEeeEEEEe---CC--------------------------E-EEEccCCcEEEeCCCCceeEEecCCc
Q 022278          237 EVHYN-QHGLLLLEGQGIYRL---GD--------------------------S-WYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       237 ~~H~~-eh~~~iL~G~G~~~~---~g--------------------------~-~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      |.|+. .+..||++|+|.+.+   ++                          . ...+++||++++|.|.+||..|.+  
T Consensus       279 H~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~--  356 (418)
T 3s7i_A          279 HFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASS--  356 (418)
T ss_dssp             EEESSCEEEEEEEECCEEEEEEEEEEC-------------------CCEEEEEEEEEECTTCEEEECTTCCEEEEESS--
T ss_pred             eecCCCCEEEEEEeCeEEEEEEeCCCccccccccccccccccccccccccceEEEeeeCCCCEEEECCCCEEEEECCC--
Confidence            67754 478999999997653   32                          1 467899999999999999999865  


Q ss_pred             cEEEEEEeecCCCC
Q 022278          286 RTRYLLYKDVNRNP  299 (300)
Q Consensus       286 ~~~fi~~kd~nr~~  299 (300)
                      +++|++++.-++.|
T Consensus       357 ~l~~v~f~~~~~~~  370 (418)
T 3s7i_A          357 ELHLLGFGINAENN  370 (418)
T ss_dssp             CEEEEEEEESCTTC
T ss_pred             CEEEEEEEcCCCCC
Confidence            59999998666544

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.44  E-value=5.9e-12  Score=124.71  Aligned_cols=74  Identities=12%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             ceEEEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEeC---CE---EEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLG---DS---WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~~---g~---~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      ++.+..++|+||+..+. |.|+. .+.+||++|++.+.+-   |.   ...|++||++++|.|.+|+ .+.|+++++|++
T Consensus       393 giS~a~v~L~pGgm~~P-HwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~P~G~~H~-~~ag~e~l~fla  470 (531)
T 3fz3_A          393 RLSAERGFFYRNGIYSP-HWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVI-QQAGNQGFEYFA  470 (531)
T ss_dssp             TCEEEEEEECTTCEEEE-EEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEE-EEEEEEEEEEEE
T ss_pred             ceeEEEEEeecCccccc-eEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEECCCCeEE-EecCCCCEEEEE
Confidence            57889999999999986 77875 5889999999998873   32   5789999999999999995 456799999999


Q ss_pred             Eee
Q 022278          292 YKD  294 (300)
Q Consensus       292 ~kd  294 (300)
                      |++
T Consensus       471 F~s  473 (531)
T 3fz3_A          471 FKT  473 (531)
T ss_dssp             EES
T ss_pred             Eec
Confidence            986

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.43  E-value=7.2e-13  Score=104.76  Aligned_cols=84  Identities=15%  Similarity=0.179  Sum_probs=73.2

Q ss_pred             cceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCe
Q 022278           89 NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS  168 (300)
Q Consensus        89 ~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~  168 (300)
                      +...+.+...   .++.+..++++||+..+.|.|+.+|++||++|++++.+ +|+++.|++||++++|++.+|+++|..+
T Consensus        22 g~~~~~l~~~---~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~~~~~   97 (116)
T 2pfw_A           22 GLKRQMLGFN---HELMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV-DGVIKVLTAGDSFFVPPHVDHGAVCPTG   97 (116)
T ss_dssp             TEEEEEEEEE---TTEEEEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE-TTEEEEECTTCEEEECTTCCEEEEESSC
T ss_pred             CeEEEEEecC---CceEEEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE-CCEEEEeCCCCEEEECcCCceeeEeCCC
Confidence            3455556543   35999999999998877788999999999999999999 9999999999999999999999999778


Q ss_pred             EEEEEEEe
Q 022278          169 ATLVVFER  176 (300)
Q Consensus       169 a~vl~v~~  176 (300)
                      ++++++..
T Consensus        98 ~~~l~v~~  105 (116)
T 2pfw_A           98 GILIDTFS  105 (116)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEEC
Confidence            99988854

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.43  E-value=7.2e-13  Score=107.34  Aligned_cols=85  Identities=12%  Similarity=0.079  Sum_probs=69.0

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      +.+.+..+...+....+.+..++++||+.++.|  ...+|.+|||+|++.+.+||+.+.+++||++++++|++|++.|.+
T Consensus        24 ~~~~~g~v~s~~~~~~~~~~~~~~~pG~~~~~H--~~~~E~~~Vl~G~~~~~~~g~~~~l~~GD~v~ip~g~~H~~~~~~  101 (119)
T 3lwc_A           24 ADISVGNLVDERHGGPITIGYGRYAPGQSLTET--MAVDDVMIVLEGRLSVSTDGETVTAGPGEIVYMPKGETVTIRSHE  101 (119)
T ss_dssp             EEEEEEEC------CCCEEEEEEECTTCEEEEE--CSSEEEEEEEEEEEEEEETTEEEEECTTCEEEECTTCEEEEEEEE
T ss_pred             CCEEEEEeecCCCCCCEEEEEEEECCCCCcCcc--CCCCEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCEEEEEcCC
Confidence            667777777666567788899999999998763  377789999999999999999999999999999999999999986


Q ss_pred             CccEEEEE
Q 022278          284 KTRTRYLL  291 (300)
Q Consensus       284 ~e~~~fi~  291 (300)
                       ++.++|+
T Consensus       102 -~~~~~l~  108 (119)
T 3lwc_A          102 -EGALTAY  108 (119)
T ss_dssp             -EEEEEEE
T ss_pred             -CCeEEEE
Confidence             5666554

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.43  E-value=1.1e-12  Score=103.90  Aligned_cols=74  Identities=12%  Similarity=0.209  Sum_probs=67.0

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEe
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER  176 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~  176 (300)
                      ..+.+.++++.||...+.|.|+.+|++||++|++++.+ +++++.|++||++++|++.+|.++|.++++++++..
T Consensus        36 ~~~~~~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i-~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~i~~  109 (114)
T 2ozj_A           36 DRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITF-DDQKIDLVPEDVLMVPAHKIHAIAGKGRFKMLQITL  109 (114)
T ss_dssp             SSEEEEEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE-TTEEEEECTTCEEEECTTCCBEEEEEEEEEEEEEEE
T ss_pred             CCceEEEEEECCCCccccEECCCCeEEEEEeCEEEEEE-CCEEEEecCCCEEEECCCCcEEEEeCCCcEEEEEEE
Confidence            34677788899998877788999999999999999999 999999999999999999999999977899988854

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.43  E-value=5.3e-13  Score=122.99  Aligned_cols=94  Identities=14%  Similarity=0.156  Sum_probs=78.6

Q ss_pred             cCC-ceeEEEEeeCC--CCCcceEEEEEEecCCccc-CcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCc
Q 022278          201 TPG-EVFQLRKLLPQ--AVPFDFNIHIMDFQPGDFL-NVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP  276 (300)
Q Consensus       201 ~~g-~~~~~~~l~p~--~~~~~~~~~~~tl~PG~~~-p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~  276 (300)
                      .++ ++...+.|...  ..+..+.+.+++++||+.. ..+|+|..+|.+|||+|++.+++||+++.+++||+++++++++
T Consensus        46 lp~~~~~~~~~L~~p~~~~~~~~~~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~~~~L~~GD~i~ip~~~~  125 (278)
T 1sq4_A           46 LPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAMQPGGYAFIPPGAD  125 (278)
T ss_dssp             CTTCEEEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSCEEEECTTEEEEECTTCC
T ss_pred             CCCccCcEEEEEecCCCCCCCcEEEEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCc
Confidence            444 44455666643  3456788889999999988 2346688889999999999999999999999999999999999


Q ss_pred             eeEEecCCccEEEEEEee
Q 022278          277 QWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       277 H~~~n~G~e~~~fi~~kd  294 (300)
                      |++.|.|+++++|++...
T Consensus       126 H~~~N~g~~~~~~l~v~~  143 (278)
T 1sq4_A          126 YKVRNTTGQHTRFHWIRK  143 (278)
T ss_dssp             EEEECCSSSCEEEEEEEE
T ss_pred             EEEEECCCCCEEEEEEEe
Confidence            999999999999998753

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.43  E-value=2.2e-12  Score=101.93  Aligned_cols=94  Identities=14%  Similarity=0.088  Sum_probs=77.8

Q ss_pred             cCCCCCCcccCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEe
Q 022278          192 STDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWM  271 (300)
Q Consensus       192 ~~~d~~~~~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~  271 (300)
                      ..+++++.+... ++..+.|.+.+   .+.+..++++||...+. |.|..+|.+||++|++.+.+||+.+.+++||++|+
T Consensus        10 ~~~~~~~~~~~~-g~~~~~l~~~~---~~~~~~~~~~pg~~~~~-H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i   84 (116)
T 2pfw_A           10 FGEQTEIEDIGG-GLKRQMLGFNH---ELMAVKIWFDKGAEGYV-HAHRHSQVSYVVEGEFHVNVDGVIKVLTAGDSFFV   84 (116)
T ss_dssp             CTTTSCCEECST-TEEEEEEEEET---TEEEEEEEECTTEEEEE-ECCSSEEEEEEEEECEEEEETTEEEEECTTCEEEE
T ss_pred             cccCceeeeCCC-CeEEEEEecCC---ceEEEEEEECCCCcCCc-EECCcceEEEEEeeEEEEEECCEEEEeCCCCEEEE
Confidence            578888877643 34556665542   37788999999999886 78888899999999999999999999999999999


Q ss_pred             CCCCceeEEecCCccEEEEEE
Q 022278          272 APFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       272 ~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +++++|++.|.+  +.+++..
T Consensus        85 p~~~~H~~~~~~--~~~~l~v  103 (116)
T 2pfw_A           85 PPHVDHGAVCPT--GGILIDT  103 (116)
T ss_dssp             CTTCCEEEEESS--CEEEEEE
T ss_pred             CcCCceeeEeCC--CcEEEEE
Confidence            999999999998  4555543

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.42  E-value=7.4e-13  Score=101.55  Aligned_cols=75  Identities=13%  Similarity=0.258  Sum_probs=67.7

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEe
Q 022278          101 GSHFVMYLANMQENARSALPPHDV-ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFER  176 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~  176 (300)
                      +..+...+++++||+..+.|.|.+ +|++||++|++++.+ +++++.|++||++++|++.+|+++|  +++++++++..
T Consensus        25 ~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~  102 (105)
T 1v70_A           25 SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV-GEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTA  102 (105)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE-TTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEE
T ss_pred             CCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE-CCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeC
Confidence            457899999999998887787875 899999999999999 9999999999999999999999998  46899998854

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.42  E-value=4.3e-12  Score=125.40  Aligned_cols=75  Identities=12%  Similarity=0.173  Sum_probs=61.5

Q ss_pred             ceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEe-C---CEEE--EccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL-G---DSWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~-~---g~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      ++.+..+.|+||+..+. |.|+.. +..||++|++.+.+ +   .+.+  .|++||+.++|.|.+|...| ++++++||+
T Consensus       357 giS~a~v~L~pGgm~~P-HwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~~a-~~e~~~~l~  434 (496)
T 3ksc_A          357 KLSAEHGSLHKNAMFVP-HYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKS-LSDRFSYVA  434 (496)
T ss_dssp             TCEEEEEEEETTCEEEE-EEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEE-CSSEEEEEE
T ss_pred             ceeEEEEEeeCCeEECC-eeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEEECCCCEEEEEe-CCCCEEEEE
Confidence            36889999999999997 566554 88999999998873 2   2444  59999999999999997666 589999999


Q ss_pred             Eeec
Q 022278          292 YKDV  295 (300)
Q Consensus       292 ~kd~  295 (300)
                      +++-
T Consensus       435 f~~s  438 (496)
T 3ksc_A          435 FKTN  438 (496)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            9853

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.42  E-value=9.3e-13  Score=113.58  Aligned_cols=73  Identities=15%  Similarity=0.144  Sum_probs=67.0

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      ....+++++|+||+..+. |.|..+|.+|||+|+..+.++ |+++.+++||.+ ++++.+|++.|.|++++++|+-
T Consensus        77 ~G~~~~~v~l~PG~~~~~-H~H~~eE~~~VLeGel~l~ld~ge~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V  150 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPM-HRTNSIDYGIVLEGEIELELDDGAKRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFI  150 (172)
T ss_dssp             CSEEEEEEEECTTCBCCC-BCCSEEEEEEEEESCEEEECGGGCEEEECTTCEE-EECSCCBEEECCSSSCEEEEEE
T ss_pred             CCeEEEEEEECCCCCCCC-eecCceEEEEEEeCEEEEEECCCeEEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEE
Confidence            357788999999999997 677777888999999999998 899999999999 9999999999999999999874

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.42  E-value=6.9e-13  Score=114.50  Aligned_cols=79  Identities=22%  Similarity=0.245  Sum_probs=71.0

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC----CEEEEccCCcEEEeCCCCceeEEecCCc-cEEEEEE
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG----DSWYPVQAGDVLWMAPFVPQWYAALGKT-RTRYLLY  292 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~----g~~~~v~~GD~i~~~~~~~H~~~n~G~e-~~~fi~~  292 (300)
                      ..+.+.+++++||+..+.| ||..+|.+|||+|++++.+.    ++.+.+++||++++|+|.+|+++|+|++ ++++++.
T Consensus        39 ~~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v  117 (178)
T 1dgw_A           39 RDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKF  117 (178)
T ss_dssp             TTEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEE
Confidence            3588999999999999875 77778999999999999996    8999999999999999999999999996 8999998


Q ss_pred             eecCC
Q 022278          293 KDVNR  297 (300)
Q Consensus       293 kd~nr  297 (300)
                      .+.+-
T Consensus       118 ~~~~~  122 (178)
T 1dgw_A          118 AITFR  122 (178)
T ss_dssp             EECCS
T ss_pred             ECCCC
Confidence            66543

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.42  E-value=6.2e-13  Score=121.99  Aligned_cols=98  Identities=8%  Similarity=0.074  Sum_probs=84.7

Q ss_pred             CCCCCcccCC-ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEe
Q 022278          194 DKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWM  271 (300)
Q Consensus       194 ~d~~~~~~~g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~  271 (300)
                      +++-....+| ++..++.|+....+..|.+.+++++||+..+. |+|..||.+|||+|+..+++| |+++.+++||++|+
T Consensus        43 ~~iv~s~lPg~~~~~~~vL~sP~~G~~f~~~lv~l~PGg~s~~-~~h~~EEfiyVleG~l~l~l~~g~~~~L~~Gds~y~  121 (266)
T 4e2q_A           43 ESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGL-PPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYL  121 (266)
T ss_dssp             GGCCCEECTTSSSEEEEEEECGGGTCSSEEEEEEECSSEECCC-CCTTEEEEEEEEEECEEEEC--CCCEEECTTEEEEE
T ss_pred             cceEEeeCCCCcCEEEEEEcCCCCCCcEEEEEEEECcCCcCCC-CCCCCeEEEEEEEEEEEEEECCCcEEEEcCCCEEEE
Confidence            4566666777 66788888855446788899999999999986 689999999999999999999 99999999999999


Q ss_pred             CCCCceeEEecCCccEEEEEEee
Q 022278          272 APFVPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       272 ~~~~~H~~~n~G~e~~~fi~~kd  294 (300)
                      +++.+|++.|.  ++.++++++-
T Consensus       122 p~~~~H~~~N~--~~Ar~l~V~k  142 (266)
T 4e2q_A          122 PPNFHHSLDCV--ESATLVVFER  142 (266)
T ss_dssp             CTTCCCEEEES--SCEEEEEEEE
T ss_pred             CCCCCEEEEeC--CCEEEEEEEe
Confidence            99999999994  7899998864

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.42  E-value=9.2e-13  Score=119.75  Aligned_cols=101  Identities=14%  Similarity=0.079  Sum_probs=81.3

Q ss_pred             CCCCCcccCC-ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceee-ccceEEEEEEeeEEEEeCCEEEEccCCcEEEe
Q 022278          194 DKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWM  271 (300)
Q Consensus       194 ~d~~~~~~~g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H-~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~  271 (300)
                      +++.....++ ++...+.|.+...+..+.+.+++++||+..+.+++| ..||.+|||+|++.+++||+++.+++||.+++
T Consensus        32 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~~~~L~~Gd~~~~  111 (261)
T 1rc6_A           32 DGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYC  111 (261)
T ss_dssp             GGSCCBCCTTEEEEEEEECCCGGGTCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTEEEEEETTEEEEE
T ss_pred             hhcEEeeccCCCCcEEEEEeCCCCCCcEEEEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECCEEEEECCCCEEEE
Confidence            4443333443 445666676544455677889999999988765444 57889999999999999999999999999999


Q ss_pred             CCCCceeEEecCCccEEEEEEee
Q 022278          272 APFVPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       272 ~~~~~H~~~n~G~e~~~fi~~kd  294 (300)
                      +++.+|++.|.|+++++|++.+-
T Consensus       112 ~~~~~H~~~N~~~~~~~~l~v~~  134 (261)
T 1rc6_A          112 PPGSLMTFVNAQAEDSQIFLYKR  134 (261)
T ss_dssp             CTTCCCEEEECSSSCEEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCEEEEEEEe
Confidence            99999999999999999998763

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.41  E-value=1.7e-12  Score=104.28  Aligned_cols=76  Identities=14%  Similarity=0.132  Sum_probs=66.7

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEee
Q 022278          102 SHFVMYLANMQENARSALPPHDV-ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERR  177 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~  177 (300)
                      ..+.+.+++++||+..+.|.|.+ +|++||++|++++++.+|+++.|++||++++|++.+|+++|  +++++++++..+
T Consensus        37 ~~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p  115 (125)
T 3h8u_A           37 NDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAP  115 (125)
T ss_dssp             SSCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEES
T ss_pred             CCEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECC
Confidence            45788899999999988888885 99999999999999746889999999999999999999999  678999988544

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.40  E-value=9.8e-13  Score=113.65  Aligned_cols=88  Identities=16%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCc-ceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEec
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV-KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~-~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                      +++..+.|.+......+.+..++++||+..+. .|+|..+|.+|||+|++.+.+||+++.+++||+++++++++|++.|.
T Consensus        88 ~g~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~~~~l~~GD~i~i~~~~~H~~~n~  167 (192)
T 1y9q_A           88 LNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAV  167 (192)
T ss_dssp             TTEEEEEEEEEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTEEEEECTTCEEEEECSSSEEEEES
T ss_pred             CCEEEEEeccCCCCCcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCEEEEeCCCCEEEEcCCCCeEeECC
Confidence            45566667776556678888899999998763 35677789999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEE
Q 022278          283 GKTRTRYLLY  292 (300)
Q Consensus       283 G~e~~~fi~~  292 (300)
                      |++++ |++.
T Consensus       168 ~~~~~-~l~v  176 (192)
T 1y9q_A          168 TEKAV-FQNI  176 (192)
T ss_dssp             SSCEE-EEEE
T ss_pred             CCCcE-EEEE
Confidence            99998 7654

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.40  E-value=1.2e-12  Score=105.39  Aligned_cols=76  Identities=20%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             CcceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          217 PFDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       217 ~~~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      ...+.+.+++++||..++..|.|... ..+||++|++.+.+||+.+.+++||++|++++++|++.|.|+++++|++.
T Consensus        23 ~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~~i   99 (125)
T 3cew_A           23 LTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEKIELQAGDWLRIAPDGKRQISAASDSPIGFLCI   99 (125)
T ss_dssp             CSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTEEEEEETTEEEEECTTCCEEEEEBTTBCEEEEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            34567788999999999833677655 45569999999999999999999999999999999999999999998765

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=99.40  E-value=1.7e-13  Score=107.30  Aligned_cols=73  Identities=11%  Similarity=0.047  Sum_probs=62.0

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC---EEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD---SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g---~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      .+-+.+++|+||+.++.|.|+..++.++|++|++.+.++|   ++..+++||.+|+|.|..|.+.|.|++|++||-
T Consensus        16 ~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~Ie   91 (98)
T 3lag_A           16 EVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFLE   91 (98)
T ss_dssp             SEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEE
T ss_pred             eEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEEcCCCcEECEECCCCeEEEEE
Confidence            3667889999999999844444456778889999999887   567789999999999999999999999999985

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.40  E-value=1.8e-12  Score=101.23  Aligned_cols=75  Identities=20%  Similarity=0.265  Sum_probs=67.9

Q ss_pred             CCcEEEEEEEEcCCCcCCCC--CCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEE
Q 022278          101 GSHFVMYLANMQENARSALP--PHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE  175 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~--~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~  175 (300)
                      +..++++.++++||+....|  .|. .+|++||++|++++.+ +++++.|++||++++|++.+|+++|  +++++++++.
T Consensus        18 ~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~   96 (113)
T 2gu9_A           18 LRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV-DGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFY   96 (113)
T ss_dssp             ETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE-TTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             CCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE-CCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEE
Confidence            35789999999999887766  788 8999999999999999 9999999999999999999999998  5688988884


Q ss_pred             e
Q 022278          176 R  176 (300)
Q Consensus       176 ~  176 (300)
                      .
T Consensus        97 ~   97 (113)
T 2gu9_A           97 H   97 (113)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.39  E-value=4.2e-12  Score=100.13  Aligned_cols=86  Identities=16%  Similarity=0.247  Sum_probs=71.2

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      +++..+.|...   .++.+..++++||..++. |.|..++.+||++|++.+.++|+.+.+++||++|+++|++|++.|.+
T Consensus        27 ~~~~~~~l~~~---~~~~~~~~~~~~g~~~~~-H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~  102 (115)
T 1yhf_A           27 DQMLSRTLVQR---QDLGITVFSLDKGQEIGR-HSSPGDAMVTILSGLAEITIDQETYRVAEGQTIVMPAGIPHALYAVE  102 (115)
T ss_dssp             TCEEEEEEEEE---TTEEEEEEEECTTCEEEE-ECCSSEEEEEEEESEEEEEETTEEEEEETTCEEEECTTSCEEEEESS
T ss_pred             CCeEEEEEEeC---CceEEEEEEECCCCccCC-EECCCcEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECC
Confidence            34466666643   246778899999999986 78888899999999999999999999999999999999999999998


Q ss_pred             CccEEEEEEe
Q 022278          284 KTRTRYLLYK  293 (300)
Q Consensus       284 ~e~~~fi~~k  293 (300)
                      +..+..++.+
T Consensus       103 ~~~~~~v~~~  112 (115)
T 1yhf_A          103 AFQMLLVVVK  112 (115)
T ss_dssp             CEEEEEEEEC
T ss_pred             CceEEEEEEc
Confidence            6555555443

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.38  E-value=1.4e-12  Score=104.75  Aligned_cols=76  Identities=14%  Similarity=0.152  Sum_probs=68.8

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC-CeEEEEEEEee
Q 022278          101 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE-GSATLVVFERR  177 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~-~~a~vl~v~~~  177 (300)
                      +..+.+.+++++||+..+.|.|+.+|++||++|++++.+ +|+++.|++||++++|++.+|.++|. .+++++++..+
T Consensus        38 ~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~l~v~~p  114 (126)
T 4e2g_A           38 GKNLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI-GEETRVLRPGMAYTIPGGVRHRARTFEDGCLVLDIFSP  114 (126)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE-TTEEEEECTTEEEEECTTCCEEEECCTTCEEEEEEEES
T ss_pred             CCCeEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE-CCEEEEeCCCCEEEECCCCcEEeEECCCCEEEEEEECC
Confidence            457889999999999888888999999999999999999 99999999999999999999999993 36998888553

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.38  E-value=2.2e-12  Score=101.83  Aligned_cols=82  Identities=11%  Similarity=0.175  Sum_probs=71.4

Q ss_pred             ceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeE
Q 022278           90 TLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSA  169 (300)
Q Consensus        90 ~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a  169 (300)
                      ...+.+..   +..+...+++++||...+.|.|+.+|++||++|++++.+ +|+++.|++||++++|++.+|+++|.+++
T Consensus        29 ~~~~~l~~---~~~~~~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~  104 (115)
T 1yhf_A           29 MLSRTLVQ---RQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-DQETYRVAEGQTIVMPAGIPHALYAVEAF  104 (115)
T ss_dssp             EEEEEEEE---ETTEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-TTEEEEEETTCEEEECTTSCEEEEESSCE
T ss_pred             eEEEEEEe---CCceEEEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCc
Confidence            34444543   356888999999998888788999999999999999999 99999999999999999999999997788


Q ss_pred             EEEEEE
Q 022278          170 TLVVFE  175 (300)
Q Consensus       170 ~vl~v~  175 (300)
                      +++|+.
T Consensus       105 ~~~~v~  110 (115)
T 1yhf_A          105 QMLLVV  110 (115)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            888873

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.38  E-value=2.1e-12  Score=107.56  Aligned_cols=75  Identities=16%  Similarity=0.199  Sum_probs=67.1

Q ss_pred             ceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEeCCEE------EEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSW------YPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~~g~~------~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      .+.+..++++||..++. |.|. .++.+|||+|++.+.++|+.      +.+++||++|+++|++|++.|.|+++++|++
T Consensus        42 ~~~~~~~~l~pg~~~~~-H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~  120 (148)
T 2oa2_A           42 HLQVTLMSIQVGEDIGL-EIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYS  120 (148)
T ss_dssp             SCEEEEEEECTTCBCCC-BCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEE
T ss_pred             ceEEEEEEECCCCccCc-eECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEE
Confidence            46677899999999997 4555 56899999999999999999      9999999999999999999999999999887


Q ss_pred             Eee
Q 022278          292 YKD  294 (300)
Q Consensus       292 ~kd  294 (300)
                      ...
T Consensus       121 i~~  123 (148)
T 2oa2_A          121 IYA  123 (148)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            643

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.37  E-value=1.8e-12  Score=122.53  Aligned_cols=143  Identities=13%  Similarity=0.135  Sum_probs=104.2

Q ss_pred             CCcccccccCCCCcceeeecCCCC--------Chhh----hhcccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEE
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTL--------SPSH----LQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYL   95 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~--------sps~----I~~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L   95 (300)
                      ..+.||++.++++.++++++++..        +|++    +.++++...+.|+...  ...... .    ...+..++++
T Consensus       151 p~~vLa~~~~v~~~~~~~l~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~----~~~gg~~~~~  223 (361)
T 2vqa_A          151 PIAWVEENLGWTAAQVAQLPKKQVYISSYGPASGPLASATPQGQTAKIEVPHTHNL--LGQQPL-V----SLGGNELRLA  223 (361)
T ss_dssp             CHHHHHHHHTCCHHHHTTSCSSCCCEECSSCCCCCGGGCCCSSCCCBCCSCCEEEC--TTSCCS-E----EETTEEEEEE
T ss_pred             CHHHHHHHhCcCHHHHHhccccCceEEeCCCCCCccccccccCcCCCCCcceEecc--ccCCCc-c----cCCCceEEEE
Confidence            457789999999999999998875        3442    3344455555444210  000000 0    1123456666


Q ss_pred             ecCCCC--CcEEEEEEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEE--cCCc--EEEeccCcEEEeCCCCceEEee--C
Q 022278           96 ITPAMG--SHFVMYLANMQENARSALPPHDV-ERFIFVVQGSAMLTN--ASGV--SSKLMVDSYTYLPPNFAHSLRA--E  166 (300)
Q Consensus        96 ~sp~~g--~~f~~~lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v--~gg~--~~~L~~Gds~yfpa~~~H~~~N--~  166 (300)
                      .++...  +.|.+.+++++||+..+.|.|.+ +|++||++|++++++  .+|+  ++.|++||++++|++.+|.++|  +
T Consensus       224 ~~~~~~~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~  303 (361)
T 2vqa_A          224 SAKEFPGSFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQ  303 (361)
T ss_dssp             CTTTCTTSTTCEEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEEECTTCEEEEECCSS
T ss_pred             ehhhCcCcccceEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEEECCCCeEEeEECCC
Confidence            665443  37999999999999887787777 999999999999997  2466  8999999999999999999999  5


Q ss_pred             CeEEEEEEEee
Q 022278          167 GSATLVVFERR  177 (300)
Q Consensus       167 ~~a~vl~v~~~  177 (300)
                      ++++++++...
T Consensus       304 ~~~~~l~~~~~  314 (361)
T 2vqa_A          304 KPLDIVVVFND  314 (361)
T ss_dssp             SCEEEEEEESS
T ss_pred             CCEEEEEEECC
Confidence            78999999543

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.36  E-value=1.5e-12  Score=126.57  Aligned_cols=77  Identities=16%  Similarity=0.205  Sum_probs=71.5

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe----CCEEEEccCCcEEEeCCCCceeEEecC-CccEEEEEEe
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALG-KTRTRYLLYK  293 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G-~e~~~fi~~k  293 (300)
                      ++.+.+++++||+..+.| ||..+|.+|||+|+|++.+    +++++.|++||++++|+|.+||++|+| ++++++|+..
T Consensus        48 ~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~  126 (416)
T 1uij_A           48 DYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLA  126 (416)
T ss_dssp             TCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             cEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEe
Confidence            499999999999999986 8888999999999999997    689999999999999999999999995 9999999998


Q ss_pred             ecC
Q 022278          294 DVN  296 (300)
Q Consensus       294 d~n  296 (300)
                      +.+
T Consensus       127 ~~~  129 (416)
T 1uij_A          127 IPV  129 (416)
T ss_dssp             EES
T ss_pred             ccC
Confidence            864

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.36  E-value=1.2e-12  Score=125.02  Aligned_cols=142  Identities=10%  Similarity=0.004  Sum_probs=101.5

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh------h-----hcccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEE
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH------L-----QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYL   95 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~------I-----~~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L   95 (300)
                      .+.+.||+.+++|+..+++++++...+..      +     ....+....     ..+++..+.....   ..+...+++
T Consensus       175 ~p~evla~~~~vs~~~~~~l~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~-----~~v~~~~~~~~~~---~~~g~~~~~  246 (385)
T 1j58_A          175 TPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPY-----PFTYRLLEQEPIE---SEGGKVYIA  246 (385)
T ss_dssp             SCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCCSS-----CSEEEGGGSCCEE---CSSEEEEEE
T ss_pred             ccHHHHHHHhCCCHHHHHhcccccceEeccCCCCccccccccCCCCCCCC-----CeeeecccCCCee---CCCceEEEe
Confidence            45678899999999999999987653221      0     000111000     0112211111111   122345667


Q ss_pred             ecCCCC--CcEEEEEEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEEcC-----CcEEEeccCcEEEeCCCCceEEee--
Q 022278           96 ITPAMG--SHFVMYLANMQENARSALPPHDV-ERFIFVVQGSAMLTNAS-----GVSSKLMVDSYTYLPPNFAHSLRA--  165 (300)
Q Consensus        96 ~sp~~g--~~f~~~lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v~g-----g~~~~L~~Gds~yfpa~~~H~~~N--  165 (300)
                      .++..+  +.|++++++++||+....|.|.+ +|++||++|++++++ +     ++++.|++||++++|++.+|.++|  
T Consensus       247 ~~~~~~~~~~~~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i-~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~  325 (385)
T 1j58_A          247 DSTNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTV-FASDGHARTFNYQAGDVGYVPFAMGHYVENIG  325 (385)
T ss_dssp             STTTSTTCCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEE-EEETTEEEEEEEESSCEEEECTTCBEEEEECS
T ss_pred             ecccCCcccceEEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEE-EcCCCcEEEEEEcCCCEEEECCCCeEEEEECC
Confidence            666554  47999999999999887787888 999999999999999 7     789999999999999999999999  


Q ss_pred             CCeEEEEEEEee
Q 022278          166 EGSATLVVFERR  177 (300)
Q Consensus       166 ~~~a~vl~v~~~  177 (300)
                      +++++++++..+
T Consensus       326 ~~~~~~l~v~~~  337 (385)
T 1j58_A          326 DEPLVFLEIFKD  337 (385)
T ss_dssp             SSCEEEEEEESS
T ss_pred             CCCEEEEEEECC
Confidence            678999998553

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.36  E-value=2.5e-12  Score=123.98  Aligned_cols=77  Identities=14%  Similarity=0.006  Sum_probs=71.2

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEE-EeCCEEEEccCCcEEEeCCCCceeEEe-cCCccEEEEEEee
Q 022278          217 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY-RLGDSWYPVQAGDVLWMAPFVPQWYAA-LGKTRTRYLLYKD  294 (300)
Q Consensus       217 ~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~-~~~g~~~~v~~GD~i~~~~~~~H~~~n-~G~e~~~fi~~kd  294 (300)
                      ...+.+++.+++||+.++. |.|..++.+|||+|+|.+ .+||+.+++++||++++|+|..|++.| .|++++.||+.-|
T Consensus       120 t~~L~a~~~~l~PG~~~~~-HrH~~~ev~~IleG~G~~t~v~G~~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l~v~d  198 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGA-HRHAASALRFIMEGSGAYTIVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLD  198 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCC-EEESSCEEEEEEECSCEEEEETTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEEC
T ss_pred             CCeeEEEEEEECCCCCcCC-ccCCcceEEEEEEeeEEEEEECCEEEEEcCCCEEEECcCCCEEEEcCCCCCCEEEEEccc
Confidence            3568889999999999997 677778899999999987 999999999999999999999999999 9999999998665

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.35  E-value=3.9e-12  Score=101.04  Aligned_cols=76  Identities=11%  Similarity=0.135  Sum_probs=68.1

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEE-EeccCcEEEeCCCCceEEee--CCeEEEEEEEeec
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSS-KLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRY  178 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~-~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y  178 (300)
                      ..|.+..++++||+..+.|.|+.+|++||++|++++.+ +++++ .|++||++++|++.+|+++|  +++++++++..++
T Consensus        25 ~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i-~~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~  103 (117)
T 2b8m_A           25 EHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL-EDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPH  103 (117)
T ss_dssp             SSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEE-TTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECSC
T ss_pred             CceEEEEEEECCCCcCCCEeCCCcEEEEEEeCEEEEEE-CCEEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence            46788899999999888888999999999999999999 99999 99999999999999999998  5678888885444

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=99.35  E-value=1.6e-12  Score=124.29  Aligned_cols=77  Identities=13%  Similarity=0.085  Sum_probs=71.7

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEeeEE-EEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGI-YRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  295 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~-~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~  295 (300)
                      ..+.+++.+++||+.++. |.|.+++.+|||+|+|. +.+||+.+++++||++++|++..|++.|+|+++++||+.-|.
T Consensus       101 ~~L~a~~~~l~PG~~~~~-HrH~~~ev~~VleG~G~~~~vdG~~~~~~~GD~v~iP~g~~H~~~N~gde~l~~l~v~D~  178 (368)
T 3nw4_A          101 PTMWAAIQYLGPRETAPE-HRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLDI  178 (368)
T ss_dssp             SSCEEEEEEECTTCEEEE-EEESSCEEEECSSCEEEEEEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEECH
T ss_pred             CceEEEEEEECCCCccCc-eecccceEEEEEecceEEEEECCEEEEEeCCCEEEECCCCcEEeEeCCCCCeEEEEecch
Confidence            468899999999999997 67788999999999995 889999999999999999999999999999999999987763

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=99.35  E-value=2.7e-12  Score=116.11  Aligned_cols=82  Identities=9%  Similarity=-0.003  Sum_probs=69.9

Q ss_pred             eeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe--------CCE------------EEEccCCcEEE
Q 022278          211 LLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--------GDS------------WYPVQAGDVLW  270 (300)
Q Consensus       211 l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~--------~g~------------~~~v~~GD~i~  270 (300)
                      +.+.+.+..+.+..++++||+..+.|.|+..+|.+|||+|++.+++        +++            ++.+++||+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~  113 (239)
T 2xlg_A           34 ASCSAKDIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIY  113 (239)
T ss_dssp             EEEEETTEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEE
T ss_pred             eccCCCCCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEE
Confidence            3344445677888899999999887544447789999999999999        999            99999999999


Q ss_pred             eCCCCceeEEecCCccEEE-EEE
Q 022278          271 MAPFVPQWYAALGKTRTRY-LLY  292 (300)
Q Consensus       271 ~~~~~~H~~~n~G~e~~~f-i~~  292 (300)
                      +|+|++|++.|.|++++++ +++
T Consensus       114 iP~g~~H~~~N~~~~~~~~~l~~  136 (239)
T 2xlg_A          114 SPNHYMHGFVNPTDKTLPIVFVW  136 (239)
T ss_dssp             ECTTEEEEEECCSSSCEEEEEEE
T ss_pred             ECCCCCEEEEeCCCCCEEEEEEE
Confidence            9999999999999999988 554

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.34  E-value=7.3e-12  Score=104.48  Aligned_cols=86  Identities=17%  Similarity=0.207  Sum_probs=75.1

Q ss_pred             ceEEEEecCCC-CCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE-EEeccCcEEEeCCCCceEEee--
Q 022278           90 TLGAYLITPAM-GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTYLPPNFAHSLRA--  165 (300)
Q Consensus        90 ~~~~~L~sp~~-g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~-~~L~~Gds~yfpa~~~H~~~N--  165 (300)
                      .....|.++.. +..++++.++++||+..+.|.|..+|++||++|++++.+ ++++ +.|++||++++|++.+|+++|  
T Consensus        33 ~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~-~~~~~~~l~~Gd~i~ip~~~~H~~~n~~  111 (147)
T 2f4p_A           33 VWVKMLVTDENGVFNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE-RGKPARILKKGDVVEIPPNVVHWHGAAP  111 (147)
T ss_dssp             EEEEEEECCTTCSSSCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE-TTSCCEEEETTCEEEECTTCCEEEEEBT
T ss_pred             EEEEEEECCCCCCCcEEEEEEEECCCCccCceECCCceEEEEEeCEEEEEE-CCEEEEEECCCCEEEECCCCcEEeEeCC
Confidence            45566776665 578999999999999888888888999999999999999 9998 999999999999999999998  


Q ss_pred             CCeEEEEEEEe
Q 022278          166 EGSATLVVFER  176 (300)
Q Consensus       166 ~~~a~vl~v~~  176 (300)
                      +++++++++..
T Consensus       112 ~~~~~~l~v~~  122 (147)
T 2f4p_A          112 DEELVHIGIST  122 (147)
T ss_dssp             TBCEEEEEEEC
T ss_pred             CCCEEEEEEEc
Confidence            56788888743

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.34  E-value=1.1e-11  Score=98.07  Aligned_cols=79  Identities=20%  Similarity=0.282  Sum_probs=65.9

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCcc
Q 022278          207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR  286 (300)
Q Consensus       207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  286 (300)
                      ..+.+...+   .+.+.+++++||..++. |.|..++.+|||+|++.+.+||+.+.+++||+++++++++|++.|.+  +
T Consensus        28 ~~~~l~~~~---~~~~~~~~~~~g~~~~~-H~h~~~e~~~vl~G~~~~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~--~  101 (114)
T 2ozj_A           28 LSMALAQSD---RVQISLFSFADGESVSE-EEYFGDTLYLILQGEAVITFDDQKIDLVPEDVLMVPAHKIHAIAGKG--R  101 (114)
T ss_dssp             EEEECEECS---SEEEEEEEEETTSSCCC-BCCSSCEEEEEEEEEEEEEETTEEEEECTTCEEEECTTCCBEEEEEE--E
T ss_pred             EEEEEEcCC---CceEEEEEECCCCcccc-EECCCCeEEEEEeCEEEEEECCEEEEecCCCEEEECCCCcEEEEeCC--C
Confidence            344455332   25677888999999986 67888999999999999999999999999999999999999999974  5


Q ss_pred             EEEEE
Q 022278          287 TRYLL  291 (300)
Q Consensus       287 ~~fi~  291 (300)
                      ++|++
T Consensus       102 ~~~~~  106 (114)
T 2ozj_A          102 FKMLQ  106 (114)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            55554

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.34  E-value=8e-12  Score=103.97  Aligned_cols=76  Identities=18%  Similarity=0.292  Sum_probs=67.1

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcE------EEeccCcEEEeCCCCceEEee--CCeEEE
Q 022278          101 GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVS------SKLMVDSYTYLPPNFAHSLRA--EGSATL  171 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~------~~L~~Gds~yfpa~~~H~~~N--~~~a~v  171 (300)
                      +..|.+++++++||+..+.|.|. .+|++||++|++++.+ +++.      +.|++||++++|++.+|+++|  ++++++
T Consensus        40 ~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i-~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~  118 (148)
T 2oa2_A           40 GDHLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQM-GHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKL  118 (148)
T ss_dssp             CSSCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEE-ESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEE
T ss_pred             CCceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEE-CCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEE
Confidence            45788999999999988888775 6799999999999999 8888      999999999999999999998  568898


Q ss_pred             EEEEee
Q 022278          172 VVFERR  177 (300)
Q Consensus       172 l~v~~~  177 (300)
                      +++..+
T Consensus       119 l~i~~~  124 (148)
T 2oa2_A          119 YSIYAP  124 (148)
T ss_dssp             EEEEES
T ss_pred             EEEECC
Confidence            888443

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.33  E-value=2.4e-12  Score=125.65  Aligned_cols=77  Identities=12%  Similarity=0.134  Sum_probs=70.7

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC----CEEEEccCCcEEEeCCCCceeEEecC-CccEEEEEEe
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG----DSWYPVQAGDVLWMAPFVPQWYAALG-KTRTRYLLYK  293 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~----g~~~~v~~GD~i~~~~~~~H~~~n~G-~e~~~fi~~k  293 (300)
                      ++.+.+++++||+.++.| ||..+|.+|||+|+|++.+.    ++.+.|++||++++|+|.+||++|+| ++++++|+..
T Consensus        60 ~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~  138 (434)
T 2ea7_A           60 NYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLA  138 (434)
T ss_dssp             TCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             cEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEe
Confidence            489999999999999986 88899999999999999873    68999999999999999999999999 8999999987


Q ss_pred             ecC
Q 022278          294 DVN  296 (300)
Q Consensus       294 d~n  296 (300)
                      |.+
T Consensus       139 ~~s  141 (434)
T 2ea7_A          139 IPV  141 (434)
T ss_dssp             EES
T ss_pred             cCC
Confidence            643

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=99.33  E-value=6.6e-12  Score=106.56  Aligned_cols=99  Identities=13%  Similarity=0.124  Sum_probs=74.9

Q ss_pred             cceeeccCCCCCCcccCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEE--eeEEEEeCCEEEEc
Q 022278          186 TEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLE--GQGIYRLGDSWYPV  263 (300)
Q Consensus       186 p~~~~~~~~d~~~~~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~--G~G~~~~~g~~~~v  263 (300)
                      ....+-+++++|..+..+|. ..|.|.+.+ .+-+.++++++  |...+.|.|+..+|.+|||+  |+|.+.+||++++|
T Consensus        15 ~~~~iv~~~ei~~~~~~~G~-srR~l~~~~-~fp~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G~g~v~idge~~~l   90 (157)
T 4h7l_A           15 AMPQMISLSEIEAVACPCGW-AQRAFGHDA-GTSVSVHYTQI--TKAARTHYHREHQEIYVVLDHAAHATIELNGQSYPL   90 (157)
T ss_dssp             TSCEEEETTTSCCEEETTEE-EEEESCGGG-CCSCEEEEEEE--CSCCCCBBCSSCEEEEEEEEECTTCEEEETTEEEEC
T ss_pred             cCceEEEhhhCCCccCCCCe-eeEEeEcCC-CCcEEEEEEeC--CCCccceECCCCcEEEEEEecCcEEEEEECCEEEEe
Confidence            34456679999999988653 445555543 33345555554  45556644445568999999  99999999999999


Q ss_pred             cCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          264 QAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       264 ~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      ++||++++++|+.|++.  |  +++||+.
T Consensus        91 ~~GD~v~IPpg~~H~i~--g--~l~~L~I  115 (157)
T 4h7l_A           91 TKLLAISIPPLVRHRIV--G--EATIINI  115 (157)
T ss_dssp             CTTEEEEECTTCCEEEE--S--CEEEEEE
T ss_pred             CCCCEEEECCCCeEeeE--C--CEEEEEE
Confidence            99999999999999997  3  7999986

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=99.33  E-value=6.7e-12  Score=109.35  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=68.4

Q ss_pred             eCCCCCcceEEEEEEecCCcc------cCcceeec---cceEEEEEEeeEEEEeCCEE-----EEccCCcEEEeCCCCce
Q 022278          212 LPQAVPFDFNIHIMDFQPGDF------LNVKEVHY---NQHGLLLLEGQGIYRLGDSW-----YPVQAGDVLWMAPFVPQ  277 (300)
Q Consensus       212 ~p~~~~~~~~~~~~tl~PG~~------~p~~~~H~---~eh~~~iL~G~G~~~~~g~~-----~~v~~GD~i~~~~~~~H  277 (300)
                      +..+....+.+.+.+++||+.      .+. |.|.   .+|.+|||+|++.+.++|+.     +.+++||+++++++.+|
T Consensus        59 ~~~~~~~~l~~~~~~l~PG~~~~E~~~~~~-H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H  137 (190)
T 1x82_A           59 EQEEKEGDLNFATTVLYPGKVGKEFFFTKG-HFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAH  137 (190)
T ss_dssp             CCCSCTTCEEEEEEEECCCEETTEECBCCC-BBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEE
T ss_pred             cCCCCCCCeEEEEEEECCCcCCCcccCCCC-eECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeE
Confidence            443334467777889999998      555 4554   47999999999999999987     99999999999999999


Q ss_pred             eEEecCCccEEEEEEe
Q 022278          278 WYAALGKTRTRYLLYK  293 (300)
Q Consensus       278 ~~~n~G~e~~~fi~~k  293 (300)
                      ++.|+|+++++|++.-
T Consensus       138 ~~~N~g~~~~~~l~v~  153 (190)
T 1x82_A          138 RTVNIGDEPFIFLAIY  153 (190)
T ss_dssp             EEEECSSSCEEEEEEE
T ss_pred             EEEECCcccEEEEEEE
Confidence            9999999999998764

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=99.32  E-value=5.3e-12  Score=108.19  Aligned_cols=74  Identities=9%  Similarity=0.115  Sum_probs=67.2

Q ss_pred             ceEEEEEEecC-CcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          219 DFNIHIMDFQP-GDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       219 ~~~~~~~tl~P-G~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      .+.+-+++++| |+..+.+++|..|+.+|||+|+..++++|+.+.+++||.+|++++.+|.++|.|+++++++.-
T Consensus        87 ~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g~~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A           87 YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKNKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEETTEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEECCEEEEEcCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            45566889999 877777778888999999999999999999999999999999999999999999999998863

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.31  E-value=8.4e-12  Score=118.76  Aligned_cols=76  Identities=16%  Similarity=0.218  Sum_probs=71.3

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEE-EeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEee
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY-RLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~-~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd  294 (300)
                      ..+.+.+++++||+..+. |.|..++.+|||+|+|.+ .+||+.+.+++||+++++++++|++.|.|+++++||+..|
T Consensus        98 ~~l~~~~~~l~PG~~~~~-H~H~~~e~~yVl~G~g~~t~v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d  174 (354)
T 2d40_A           98 ATLYAGLQLIMPGEVAPS-HRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLD  174 (354)
T ss_dssp             SSCEEEEEEECTTCEEEE-EEESSCEEEEEEECSSCEEEETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEEC
T ss_pred             CcEEEEEEEECCCCCcCC-eecCcceEEEEEEEEEEEEEECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEEC
Confidence            467899999999999986 788888999999999999 9999999999999999999999999999999999998875

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.31  E-value=9.4e-12  Score=112.02  Aligned_cols=88  Identities=11%  Similarity=0.081  Sum_probs=76.4

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEE-eCCCCceeEEec
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLW-MAPFVPQWYAAL  282 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~-~~~~~~H~~~n~  282 (300)
                      +++..+.|...+    ..|.+++++||..++. |.|.+++.+|||+|++.+++||+.+.+++||++| +++|++|++.|.
T Consensus        22 ~Gv~~~~l~~~~----~~~~~~~~~pg~~~~~-H~H~~~e~~~Vl~G~~~~~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~   96 (243)
T 3h7j_A           22 NGVRQYSTVRGD----TEVLMSYVPPHTNVEP-HQHKEVQIGMVVSGELMMTVGDVTRKMTALESAYIAPPHVPHGARND   96 (243)
T ss_dssp             TSCEEEEEEETT----EEEEEEEECTTEEEEE-ECCSSEEEEEEEESEEEEEETTEEEEEETTTCEEEECTTCCEEEEEC
T ss_pred             CCeEEEEEECCC----CEEEEEEECCCCccCC-EECCCcEEEEEEEeEEEEEECCEEEEECCCCEEEEcCCCCcEeeEeC
Confidence            345666554332    3677888999999996 7888999999999999999999999999999998 999999999999


Q ss_pred             CCccEEEEEEeecC
Q 022278          283 GKTRTRYLLYKDVN  296 (300)
Q Consensus       283 G~e~~~fi~~kd~n  296 (300)
                      |+++++++-.|+..
T Consensus        97 ~~~~~~~l~i~r~~  110 (243)
T 3h7j_A           97 TDQEVIAIDIKRLK  110 (243)
T ss_dssp             SSSCEEEEEEEECC
T ss_pred             CCCcEEEEEEeccC
Confidence            99999999888664

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.31  E-value=1.3e-11  Score=104.13  Aligned_cols=86  Identities=14%  Similarity=0.209  Sum_probs=73.7

Q ss_pred             ceEEEEecCC-CC-CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC---------cEEEeccCcEEEeCCC
Q 022278           90 TLGAYLITPA-MG-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG---------VSSKLMVDSYTYLPPN  158 (300)
Q Consensus        90 ~~~~~L~sp~-~g-~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg---------~~~~L~~Gds~yfpa~  158 (300)
                      ....+++.+. .| ..+.+++++++||+..+.|.|..+|++||++|++++.+ ++         +++.|++||++++|++
T Consensus        25 ~~~~~l~~~~~~g~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~-~~~~~~~~~~~~~~~l~~Gd~i~ip~~  103 (163)
T 1lr5_A           25 LSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLM-GSSSLKYPGQPQEIPFFQNTTFSIPVN  103 (163)
T ss_dssp             EEEEEEECHHHHCCSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEE-CCSSSSSCCSCEEEEECTTEEEEECTT
T ss_pred             cceEEEeccccCCCCcEEEEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEE-CCccccccCccEEEEeCCCCEEEECCC
Confidence            4555565553 44 47999999999999888888899999999999999999 88         8999999999999999


Q ss_pred             CceEEeeC---CeEEEEEEEe
Q 022278          159 FAHSLRAE---GSATLVVFER  176 (300)
Q Consensus       159 ~~H~~~N~---~~a~vl~v~~  176 (300)
                      .+|+++|.   ++++++++..
T Consensus       104 ~~H~~~n~~~~~~~~~l~i~~  124 (163)
T 1lr5_A          104 DPHQVWNSDEHEDLQVLVIIS  124 (163)
T ss_dssp             CCEEEECCCSSSCEEEEEEEE
T ss_pred             CcEEeEeCCCCCCEEEEEEEC
Confidence            99999983   4789998853

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.30  E-value=6.9e-12  Score=122.83  Aligned_cols=75  Identities=23%  Similarity=0.307  Sum_probs=69.3

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe----CCEEEEccCCcEEEeCCCCceeEEecC-CccEEEEEEe
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALG-KTRTRYLLYK  293 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G-~e~~~fi~~k  293 (300)
                      .+.+.+++++||+..+.| ||..+|.+|||+|+|++.+    +++.+.+++||++++|+|.+||++|+| ++++++|+..
T Consensus        85 ~~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~  163 (445)
T 2cav_A           85 DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFA  163 (445)
T ss_dssp             TEEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred             cEEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEe
Confidence            499999999999999986 8889999999999999986    248999999999999999999999999 8999999877


Q ss_pred             e
Q 022278          294 D  294 (300)
Q Consensus       294 d  294 (300)
                      |
T Consensus       164 ~  164 (445)
T 2cav_A          164 I  164 (445)
T ss_dssp             E
T ss_pred             c
Confidence            6

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=99.28  E-value=1.9e-11  Score=103.24  Aligned_cols=84  Identities=7%  Similarity=0.119  Sum_probs=71.5

Q ss_pred             CceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEec
Q 022278          203 GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       203 g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                      ++.+.++.|+..+.+..+.+.+++++ |+..+  .||..+|.+|||+|+..++++|+.+.++|||.+|+|+|.+|.+.|.
T Consensus        49 ~~~v~i~~l~s~~~~~~~s~g~~~~e-~~~~~--~~~~~eE~~yVLeG~~~l~i~g~~~~l~~GD~i~iP~G~~h~~~n~  125 (151)
T 4axo_A           49 SDVVYTKDLFTLEESPRLGCGMMEMK-ETTFD--WTLNYDEIDYVIDGTLDIIIDGRKVSASSGELIFIPKGSKIQFSVP  125 (151)
T ss_dssp             TCCEEEEECSCTTTCSSCEEEEEEEE-EEEEE--EECSSEEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCEEEEEEE
T ss_pred             CCCEEEEEeecCCCCCcEEEEEEEEc-Ccccc--EeCCCcEEEEEEEeEEEEEECCEEEEEcCCCEEEECCCCEEEEEeC
Confidence            37788888886555668888899998 66654  4667888999999999999999999999999999999999999998


Q ss_pred             CCccEEEEE
Q 022278          283 GKTRTRYLL  291 (300)
Q Consensus       283 G~e~~~fi~  291 (300)
                        +++++|+
T Consensus       126 --~~a~~l~  132 (151)
T 4axo_A          126 --DYARFIY  132 (151)
T ss_dssp             --EEEEEEE
T ss_pred             --CCEEEEE
Confidence              5666665

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=99.28  E-value=1.6e-11  Score=101.28  Aligned_cols=82  Identities=18%  Similarity=0.147  Sum_probs=66.8

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      ..+..+.|...+.. .+.+.+++++|| ..  +.||..+|.+|||+|++.+++||+.+.+++||.+++++|.+|.+.|. 
T Consensus        42 ~~~~~~~L~~~~~~-~~~~~~~~~~pG-~~--~~h~~~~E~~~VLeG~~~l~~~g~~~~l~~GD~i~~p~g~~h~~~~~-  116 (133)
T 2pyt_A           42 CVGLTDLVTEQDGS-SMAAGFMQWDNA-FF--PWTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTP-  116 (133)
T ss_dssp             CCEEEEEECGGGTC-SSEEEEEEEEEE-EE--EEECSSEEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCEEEEEEE-
T ss_pred             ceEEEEEEecCCCC-cEEEEEEEECCC-Cc--cccCCCCEEEEEEECEEEEEECCEEEEECCCcEEEECCCCEEEEEeC-
Confidence            34456666654444 788889999999 33  34556788999999999999999999999999999999999999984 


Q ss_pred             CccEEEEE
Q 022278          284 KTRTRYLL  291 (300)
Q Consensus       284 ~e~~~fi~  291 (300)
                       +++++|+
T Consensus       117 -~~~~~l~  123 (133)
T 2pyt_A          117 -TSVRFLY  123 (133)
T ss_dssp             -EEEEEEE
T ss_pred             -CCEEEEE
Confidence             5666665

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=99.27  E-value=2.7e-11  Score=105.46  Aligned_cols=81  Identities=10%  Similarity=0.108  Sum_probs=68.8

Q ss_pred             EecCCCCCcEEEEEEEEcCCCc------CCCCCC---CceEEEEEEECEEEEEEcCCcE-----EEeccCcEEEeCCCCc
Q 022278           95 LITPAMGSHFVMYLANMQENAR------SALPPH---DVERFIFVVQGSAMLTNASGVS-----SKLMVDSYTYLPPNFA  160 (300)
Q Consensus        95 L~sp~~g~~f~~~lv~l~PG~~------~~~~~h---~gEEf~yVLeG~v~l~v~gg~~-----~~L~~Gds~yfpa~~~  160 (300)
                      +..|..+..+.+.+++++||+.      +..|.|   +.+|++||++|++++.+ ++++     +.|++||++++|++.+
T Consensus        58 l~~~~~~~~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i-~~~~g~~~~~~l~~GD~v~ip~g~~  136 (190)
T 1x82_A           58 VEQEEKEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLL-QTPEGDAKWISMEPGTVVYVPPYWA  136 (190)
T ss_dssp             ECCCSCTTCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEE-ECTTCCEEEEEECTTCEEEECTTCE
T ss_pred             ecCCCCCCCeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEE-cCcCCcEEEEEECCCcEEEECCCCe
Confidence            3666666789999999999987      555655   45899999999999999 7777     9999999999999999


Q ss_pred             eEEee--CCeEEEEEEEe
Q 022278          161 HSLRA--EGSATLVVFER  176 (300)
Q Consensus       161 H~~~N--~~~a~vl~v~~  176 (300)
                      |++.|  +++++++++..
T Consensus       137 H~~~N~g~~~~~~l~v~~  154 (190)
T 1x82_A          137 HRTVNIGDEPFIFLAIYP  154 (190)
T ss_dssp             EEEEECSSSCEEEEEEEE
T ss_pred             EEEEECCcccEEEEEEEC
Confidence            99999  67888888843

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.25  E-value=1.4e-11  Score=96.50  Aligned_cols=70  Identities=17%  Similarity=0.266  Sum_probs=58.5

Q ss_pred             EEEEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEEcCC-cEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEee
Q 022278          106 MYLANMQENARSALPPHDV-ERFIFVVQGSAMLTNASG-VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  177 (300)
Q Consensus       106 ~~lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v~gg-~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~  177 (300)
                      ...+.+.||. ...|.|+. +|++||++|++++.+ +| +++.|++||++++|++.+|+++|.++++++++...
T Consensus        30 ~~~~~~~~g~-~~~H~H~~~~E~~~Vl~G~~~~~~-~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~i~~~  101 (107)
T 2i45_A           30 QFHLVKLLGD-YGWHTHGYSDKVLFAVEGDMAVDF-ADGGSMTIREGEMAVVPKSVSHRPRSENGCSLVLIELS  101 (107)
T ss_dssp             EEEEEEEEEE-CCCBCC--CCEEEEESSSCEEEEE-TTSCEEEECTTEEEEECTTCCEEEEEEEEEEEEEEECC
T ss_pred             EEEEEECCCC-CcceeCCCCCEEEEEEeCEEEEEE-CCCcEEEECCCCEEEECCCCcEeeEeCCCeEEEEEECC
Confidence            3445667775 44678888 999999999999999 88 99999999999999999999999778999988544

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=99.25  E-value=5.3e-11  Score=92.60  Aligned_cols=67  Identities=27%  Similarity=0.376  Sum_probs=59.4

Q ss_pred             ceEEEEEEecCCcccCcceeecc-ceE-EEEEEeeEEEEeC-CEEEEccCCcEEEeCCCCceeEEecCCcc
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYN-QHG-LLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKTR  286 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~-eh~-~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  286 (300)
                      .+.+..++++||..++. |.|.. .+. +||++|++.+.++ |+++.+++||++|++++++|++.|.++..
T Consensus        32 ~~~~~~~~~~~g~~~~~-H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~  101 (110)
T 2q30_A           32 NFKIVSFTFKAGQELPV-HSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAVLVAPISTPHGVRAVTDMK  101 (110)
T ss_dssp             SCEEEEEEECTTCEEEE-ECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEEEEEETTSCEEEEESSSEE
T ss_pred             CEEEEEEEECCCCcCCc-ccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCEEEeCCCCcEEEEEcCCcE
Confidence            56777899999999986 67775 466 7999999999999 79999999999999999999999998744

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.24  E-value=6.4e-11  Score=95.15  Aligned_cols=73  Identities=12%  Similarity=0.171  Sum_probs=66.6

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEE
Q 022278          101 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF  174 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v  174 (300)
                      ...+..+.++++||...+.|.|+..|++||++|++++.+ +++++.|++||.+++|++..|++.|  +++++++++
T Consensus        31 ~~~~~~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i-~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i  105 (128)
T 4i4a_A           31 NTPFGGAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI-NDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI  105 (128)
T ss_dssp             CCSSEEEEEEECTTEECCCBCCSSEEEEEEEESEEEEEE-TTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             CCCcEEEEEEECCCCccCCEecCCeEEEEEEeCEEEEEE-CCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            357889999999999888888999999999999999999 9999999999999999999999998  567777766

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=99.24  E-value=2e-11  Score=95.08  Aligned_cols=75  Identities=13%  Similarity=0.202  Sum_probs=65.1

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCCc-eEE-EEEEECEEEEEEcC-CcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEe
Q 022278          101 GSHFVMYLANMQENARSALPPHDV-ERF-IFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER  176 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~g-EEf-~yVLeG~v~l~v~g-g~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~  176 (300)
                      +..+...+++++||...+.|.|+. .|+ +||++|++++.+ + |+++.|++||++++|++.+|+++|.++++++++..
T Consensus        30 ~~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~-~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~~~~  107 (110)
T 2q30_A           30 SENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG-DGDAVIPAPRGAVLVAPISTPHGVRAVTDMKVLVTIA  107 (110)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC-GGGCEEEECTTEEEEEETTSCEEEEESSSEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe-CCCEEEEECCCCEEEeCCCCcEEEEEcCCcEEEEEEC
Confidence            457888999999998877777875 466 899999999999 8 79999999999999999999999976788877743

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.22  E-value=3.7e-11  Score=107.15  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=68.6

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEEe
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFER  176 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~  176 (300)
                      ..|.+.+++++||+..+.|.|++++++|||+|++++++ +|+++.|++||++++|++.+|+++| .++++++++.-
T Consensus       151 ~~~~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~ll~~v  225 (227)
T 3rns_A          151 PNLVMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV-DGKPFIVKKGESAVLPANIPHAVEAETENFKMLLILV  225 (227)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE-TTEEEEEETTEEEEECTTSCEEEECCSSCEEEEEEEE
T ss_pred             CCeEEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE-CCEEEEECCCCEEEECCCCcEEEEeCCCCEEEEEEEE
Confidence            36888999999999888888999999999999999999 9999999999999999999999999 99999988753

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.22  E-value=7.6e-11  Score=95.73  Aligned_cols=69  Identities=13%  Similarity=-0.017  Sum_probs=54.9

Q ss_pred             EEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEeCC-EEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          222 IHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGD-SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       222 ~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~~g-~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +-.+++.||+..+. |.|.. +|.+|||+|++.+.++| +.+.+++||++++++|++|++.|.+++ ++|++.
T Consensus        45 ~~~~~~~~g~~~~~-H~H~~~~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~-~~~l~~  115 (134)
T 2o8q_A           45 VIRAIPGKEAKPTW-HTHTVGFQLFYVLRGWVEFEYEDIGAVMLEAGGSAFQPPGVRHRELRHSDD-LEVLEI  115 (134)
T ss_dssp             EEEECC-----CCC-EEECCSCEEEEEEESEEEEEETTTEEEEEETTCEEECCTTCCEEEEEECTT-CEEEEE
T ss_pred             EEEEecCCCCCCCC-EECCCCcEEEEEEeCEEEEEECCcEEEEecCCCEEEECCCCcEEeEeCCCC-eEEEEE
Confidence            33444568998886 67776 89999999999999999 999999999999999999999999884 688743

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=99.21  E-value=1.7e-11  Score=110.80  Aligned_cols=83  Identities=13%  Similarity=0.216  Sum_probs=69.1

Q ss_pred             EEEecCCCCCcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEc-------CCc------------EEEeccCcE
Q 022278           93 AYLITPAMGSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNA-------SGV------------SSKLMVDSY  152 (300)
Q Consensus        93 ~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~-------gg~------------~~~L~~Gds  152 (300)
                      ..+.....+..|.++.++++||+..+.|.|. .+|++|||+|++++++.       +++            ++.|++||+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~  111 (239)
T 2xlg_A           32 DIASCSAKDIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQL  111 (239)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEE
T ss_pred             EEeccCCCCCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCE
Confidence            3444455677899999999999888888665 89999999999999971       455            899999999


Q ss_pred             EEeCCCCceEEee--CCeEEE-EEEE
Q 022278          153 TYLPPNFAHSLRA--EGSATL-VVFE  175 (300)
Q Consensus       153 ~yfpa~~~H~~~N--~~~a~v-l~v~  175 (300)
                      +++|++.+|.++|  ++++++ +++.
T Consensus       112 i~iP~g~~H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          112 IYSPNHYMHGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             EEECTTEEEEEECCSSSCEEEEEEEE
T ss_pred             EEECCCCCEEEEeCCCCCEEEEEEEE
Confidence            9999999999999  567888 4443

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.21  E-value=8.8e-11  Score=109.18  Aligned_cols=86  Identities=14%  Similarity=0.172  Sum_probs=69.4

Q ss_pred             cceEEEEecCCCCCcEEEEEEEEcCCC-cCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-
Q 022278           89 NTLGAYLITPAMGSHFVMYLANMQENA-RSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-  165 (300)
Q Consensus        89 ~~~~~~L~sp~~g~~f~~~lv~l~PG~-~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-  165 (300)
                      +..++++.++..++.+..+++++.|++ ..+.|.|. ++|++||++|++++++ +|+++.|++||++++|++.+|+++| 
T Consensus       202 g~~~~~l~~~~~~~~~~~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i-~~~~~~l~~GD~~~ip~~~~H~~~n~  280 (337)
T 1y3t_A          202 DQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT-DGQEIQLNPGDFLHVPANTVHSYRLD  280 (337)
T ss_dssp             TEEEEEEECGGGTTTSCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE-TTEEEEECTTCEEEECTTCCEEEEEC
T ss_pred             CcEEEEEecccccCCcEEEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCCeEEEEEC
Confidence            356777877665543335666776754 44566787 7999999999999999 9999999999999999999999999 


Q ss_pred             CCeEEEEEEE
Q 022278          166 EGSATLVVFE  175 (300)
Q Consensus       166 ~~~a~vl~v~  175 (300)
                      ..+++++|+.
T Consensus       281 ~~~~~~l~v~  290 (337)
T 1y3t_A          281 SHYTKMVGVL  290 (337)
T ss_dssp             SSSEEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            3379999985

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.21  E-value=3.2e-11  Score=96.96  Aligned_cols=84  Identities=11%  Similarity=0.234  Sum_probs=69.0

Q ss_pred             EEecCCC-CCcEEEEEEEEcCCCcCC-CCCCCceEEEE-EEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCe
Q 022278           94 YLITPAM-GSHFVMYLANMQENARSA-LPPHDVERFIF-VVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGS  168 (300)
Q Consensus        94 ~L~sp~~-g~~f~~~lv~l~PG~~~~-~~~h~gEEf~y-VLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~  168 (300)
                      +++.+.. ...+.+.+++++||+..+ .|.|+..|++| |++|++++.+ +++++.|++||.+++|++.+|+++|  +++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i-~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~   93 (125)
T 3cew_A           15 VELHDSLALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI-DGEKIELQAGDWLRIAPDGKRQISAASDSP   93 (125)
T ss_dssp             EECHHHHTCSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE-TTEEEEEETTEEEEECTTCCEEEEEBTTBC
T ss_pred             EEEEcccCCCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE-CCEEEEeCCCCEEEECCCCcEEEEcCCCCC
Confidence            4444443 367888999999998876 57788766555 9999999999 9999999999999999999999998  467


Q ss_pred             EEEEEEEeec
Q 022278          169 ATLVVFERRY  178 (300)
Q Consensus       169 a~vl~v~~~y  178 (300)
                      ++++++..+-
T Consensus        94 ~~~~~i~~~~  103 (125)
T 3cew_A           94 IGFLCIQVKA  103 (125)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEEEcCC
Confidence            8888885443

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.21  E-value=2.8e-11  Score=104.32  Aligned_cols=75  Identities=13%  Similarity=0.112  Sum_probs=65.9

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcC----CcEEEeccCcEEEeCCCCceEEee--CC-eEEEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS----GVSSKLMVDSYTYLPPNFAHSLRA--EG-SATLVVF  174 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~g----g~~~~L~~Gds~yfpa~~~H~~~N--~~-~a~vl~v  174 (300)
                      +.+.+.+++++||+...+|++..+|++||++|++++++ .    ++++.|++||+++||+|.+|.+.|  ++ +++++++
T Consensus        39 ~~~~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v-~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v  117 (178)
T 1dgw_A           39 RDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVL-VNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKF  117 (178)
T ss_dssp             TTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEE-EETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEE-EeCCCcEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEE
Confidence            57999999999999877774567999999999999998 5    788999999999999999999999  44 6888888


Q ss_pred             Eee
Q 022278          175 ERR  177 (300)
Q Consensus       175 ~~~  177 (300)
                      ...
T Consensus       118 ~~~  120 (178)
T 1dgw_A          118 AIT  120 (178)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            653

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.18  E-value=6.6e-11  Score=103.67  Aligned_cols=76  Identities=16%  Similarity=0.245  Sum_probs=67.6

Q ss_pred             cceEEEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEeC------CE--EEEccCCcEEEeCCCCceeEEecCCccEE
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLG------DS--WYPVQAGDVLWMAPFVPQWYAALGKTRTR  288 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~~------g~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  288 (300)
                      ..+.+.+++++||+..+. |.|.. +|.+||++|++.+.++      ++  ++.+++||++|+++|.+|++.|.|+++++
T Consensus        70 ~~~~~~~~~l~pg~~~~~-H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~  148 (201)
T 1fi2_A           70 LGVSMNRVDFAPGGTNPP-HIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAY  148 (201)
T ss_dssp             SSCEEEEEEECTTCEEEE-EECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEE
T ss_pred             CceEEEEEEECCCCCCCC-eECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEE
Confidence            457888999999999986 67775 6999999999999874      55  89999999999999999999999999999


Q ss_pred             EEEEee
Q 022278          289 YLLYKD  294 (300)
Q Consensus       289 fi~~kd  294 (300)
                      +|+.-+
T Consensus       149 ~l~v~~  154 (201)
T 1fi2_A          149 MVVSFN  154 (201)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            998644

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.17  E-value=9.2e-11  Score=95.21  Aligned_cols=73  Identities=15%  Similarity=0.242  Sum_probs=57.0

Q ss_pred             CCcEEEEEEE--EcCCCcCCCCCCCc-eEEEEEEECEEEEEEcCC-cEEEeccCcEEEeCCCCceEEee-CCeEEEEEE
Q 022278          101 GSHFVMYLAN--MQENARSALPPHDV-ERFIFVVQGSAMLTNASG-VSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVF  174 (300)
Q Consensus       101 g~~f~~~lv~--l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v~gg-~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v  174 (300)
                      +..+...+++  ++||+..+.|.|.. +|++||++|++++.+ ++ +++.|++||++++|++.+|+++| ..+++++++
T Consensus        38 ~g~~~~~~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~-~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~~~l~~  115 (134)
T 2o8q_A           38 GGMFGAHVIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEY-EDIGAVMLEAGGSAFQPPGVRHRELRHSDDLEVLEI  115 (134)
T ss_dssp             TTSCEEEEEEECC-----CCCEEECCSCEEEEEEESEEEEEE-TTTEEEEEETTCEEECCTTCCEEEEEECTTCEEEEE
T ss_pred             CCceEEEEEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEE-CCcEEEEecCCCEEEECCCCcEEeEeCCCCeEEEEE
Confidence            4455544444  45777777778887 999999999999999 88 99999999999999999999999 556788866

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.17  E-value=7.6e-11  Score=115.76  Aligned_cols=88  Identities=16%  Similarity=0.251  Sum_probs=74.0

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC--C------------------------
Q 022278          208 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG--D------------------------  258 (300)
Q Consensus       208 ~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~--g------------------------  258 (300)
                      ++.+.+.+..   ....+.+++++||+.++. |+|...+.+||++|+|++.+-  |                        
T Consensus        48 ~~~~~~~~~~l~~~gvs~~r~~i~pggl~~P-h~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q  126 (459)
T 2e9q_A           48 TEVWDQDNDEFQCAGVNMIRHTIRPKGLLLP-GFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQ  126 (459)
T ss_dssp             EEECCTTSHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEEC
T ss_pred             EEecCCCChhhccCceEEEEEEEcCCCEecc-eecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccc
Confidence            4445554422   257888999999999986 677899999999999999874  2                        


Q ss_pred             EEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecC
Q 022278          259 SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  296 (300)
Q Consensus       259 ~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~n  296 (300)
                      +.+.|++||++++|+|.+||++|.|++++++|+..|.+
T Consensus       127 ~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~  164 (459)
T 2e9q_A          127 KIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTR  164 (459)
T ss_dssp             CCEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESS
T ss_pred             eeEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCC
Confidence            36799999999999999999999999999999998854

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.17  E-value=6.4e-11  Score=116.81  Aligned_cols=88  Identities=15%  Similarity=0.231  Sum_probs=74.6

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC--------------------------
Q 022278          208 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--------------------------  258 (300)
Q Consensus       208 ~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--------------------------  258 (300)
                      ++.+.+.+..   -.+.+.+++++||+.++. |+|.+.+.+||++|+|++.+..                          
T Consensus        33 ~e~~~~~~~~l~~~gvs~~r~~l~Pggl~~P-h~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~  111 (476)
T 1fxz_A           33 IETWNPNNKPFQCAGVALSRCTLNRNALRRP-SYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRH  111 (476)
T ss_dssp             EEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EEESSCEEEEEEECCEEEEEECTTCCCC------------------CC
T ss_pred             EEeeCCCChhhccCceEEEEEEEcCCCEecc-eecCCceEEEEEecEEEEEEEcCCCcchhhcccccccccccccccccc
Confidence            4446665433   257899999999999986 6788999999999999998763                          


Q ss_pred             -EEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecC
Q 022278          259 -SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  296 (300)
Q Consensus       259 -~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~n  296 (300)
                       +.+.|++||++++|+|++||++|+|++++++|+.=|.+
T Consensus       112 qk~~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~~  150 (476)
T 1fxz_A          112 QKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTN  150 (476)
T ss_dssp             CCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTT
T ss_pred             ceEEEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecCC
Confidence             47899999999999999999999999999999887743

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=99.17  E-value=7.9e-11  Score=116.62  Aligned_cols=89  Identities=15%  Similarity=0.200  Sum_probs=75.1

Q ss_pred             EEEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC--------------------------
Q 022278          207 QLRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG--------------------------  257 (300)
Q Consensus       207 ~~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~--------------------------  257 (300)
                      .++.+.+.+..   -++.+++++++||+.+.. |+|...+.+||++|+|++.+.                          
T Consensus        29 ~~e~~~~~~~~l~~~gv~~~r~~i~pggl~~P-h~~~~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~~~~~~~  107 (493)
T 2d5f_A           29 LIETWNSQHPELQCAGVTVSKRTLNRNGLHLP-SYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQL  107 (493)
T ss_dssp             EEEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EECSSCEEEEEEECEEEEEECCTTCCCCEEECC-------------C
T ss_pred             EEEEeCCCChhhccCCEEEEEEEeCCCcEeCc-eecCCCeEEEEEeCEEEEEEEeCCCcccccccccccccccccccccc
Confidence            34445554322   358999999999999975 677889999999999999877                          


Q ss_pred             ----CEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecC
Q 022278          258 ----DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  296 (300)
Q Consensus       258 ----g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~n  296 (300)
                          .+.+.|++||++++|+|.+||++|+|++++++||.=|.+
T Consensus       108 ~d~~qkv~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~  150 (493)
T 2d5f_A          108 QDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTS  150 (493)
T ss_dssp             SEEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTT
T ss_pred             ccccceEEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCc
Confidence                157899999999999999999999999999999987754

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=99.17  E-value=1.6e-10  Score=92.10  Aligned_cols=62  Identities=16%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             cCCCcCCC---CCCCceEEEEEEECEEEEEEcCCcE--EEeccCcEEEeCCCCceEEee-C-C-eEEEEEE
Q 022278          112 QENARSAL---PPHDVERFIFVVQGSAMLTNASGVS--SKLMVDSYTYLPPNFAHSLRA-E-G-SATLVVF  174 (300)
Q Consensus       112 ~PG~~~~~---~~h~gEEf~yVLeG~v~l~v~gg~~--~~L~~Gds~yfpa~~~H~~~N-~-~-~a~vl~v  174 (300)
                      .+|.....   +.|+++|++|||+|++++++ ++++  +.|++||+++||++.+|+++| . + ++.++++
T Consensus        38 ~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~-~~~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v  107 (112)
T 2opk_A           38 SNGQASPPGFWYDSPQDEWVMVVSGSAGIEC-EGDTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAV  107 (112)
T ss_dssp             ESSCCCCTTCCBCCSSEEEEEEEESCEEEEE-TTCSSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEEE
T ss_pred             eCCccCCCCccccCCccEEEEEEeCeEEEEE-CCEEEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEE
Confidence            34544433   46899999999999999999 8888  999999999999999999998 3 2 4555555

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=99.16  E-value=7.8e-11  Score=92.76  Aligned_cols=66  Identities=18%  Similarity=0.252  Sum_probs=59.6

Q ss_pred             EEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          224 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       224 ~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +.+++||.. +  .+|..+|.+|||+|++.+.+| |+.+.+++||++++++|.+|.+.|.++.+..|++|
T Consensus        35 ~~~~~pg~~-~--~hH~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~yv~~  101 (101)
T 1o5u_A           35 IWEKEVSEF-D--WYYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYNLF  101 (101)
T ss_dssp             EEEECSEEE-E--EECSSCEEEEEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEC
T ss_pred             EEEeCCCcc-c--ccCCceEEEEEEeCEEEEEECCCCEEEECCCCEEEECCCCcEEEEeCCCeeEEEEEC
Confidence            678889874 3  247788999999999999999 99999999999999999999999999999999876

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=99.16  E-value=1.4e-10  Score=94.50  Aligned_cols=73  Identities=8%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  175 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~  175 (300)
                      ..+...+.+..||... .+.|.++||+|||+|++++++.+|+.+.|++||+++||++.+|+|+|.+.+|-+++.
T Consensus        47 g~~~~g~w~~~pG~~~-~~~~~~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv~  119 (123)
T 3bcw_A           47 GKVESGVWESTSGSFQ-SNTTGYIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYTGRWEVDRHVKKIYFV  119 (123)
T ss_dssp             TTEEEEEEEEEEEEEE-CCCTTEEEEEEEEEEEEEEECTTCCEEEEETTCEEEECTTCCCEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEECCCcee-eEcCCCcEEEEEEEEEEEEEECCCeEEEECCCCEEEECCCCeEEEEECCceeEEEEE
Confidence            4678888899998654 355667999999999999997567889999999999999999999997767665553

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.15  E-value=6.9e-11  Score=117.24  Aligned_cols=90  Identities=12%  Similarity=0.134  Sum_probs=76.7

Q ss_pred             EEEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC-------------------------
Q 022278          207 QLRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD-------------------------  258 (300)
Q Consensus       207 ~~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g-------------------------  258 (300)
                      .+..+.+.+..   ..+.+.+++++||+.+.. |+|.+.+.+||++|+|++.+-.                         
T Consensus        32 ~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lP-h~~~a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~~  110 (510)
T 3c3v_A           32 YIETWNPNNQEFECAGVALSRLVLRRNALRRP-FYSNAPQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRR  110 (510)
T ss_dssp             EEEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EECSSCEEEEEEECCEEEEEECTTCCCCEEEECCC------------
T ss_pred             eEEEeCCCCcccccCcEEEEEEEECCCCCccc-eecCCCeEEEEEeCEEEEEEEeCCCcccccccccccccccccccccc
Confidence            45556665532   368999999999999876 6778999999999999998764                         


Q ss_pred             ---------------EEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecCC
Q 022278          259 ---------------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  297 (300)
Q Consensus       259 ---------------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr  297 (300)
                                     +.+.|++||+|++|+|++||++|.|++++++|+..|.+-
T Consensus       111 ~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n  164 (510)
T 3c3v_A          111 LQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNN  164 (510)
T ss_dssp             --------CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred             ccccccccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence                           247999999999999999999999999999999998763

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=99.15  E-value=4.4e-11  Score=99.94  Aligned_cols=90  Identities=14%  Similarity=0.022  Sum_probs=69.9

Q ss_pred             ccCCCCCCcccC----CceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEE--EEcc
Q 022278          191 GSTDKQPLLETP----GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW--YPVQ  264 (300)
Q Consensus       191 ~~~~d~~~~~~~----g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~--~~v~  264 (300)
                      -+.++++|++.+    .+++..+.|...+. ....+++++++||+.+|. |+|..+|.+|||+|+..+..++..  ++++
T Consensus        12 i~~~~~~W~~~p~~~~~~Gv~~~~L~~~~~-~g~~~~~~~~~pG~~~p~-H~H~~~ee~~VL~G~~~~~~g~~~~~~~~~   89 (145)
T 2o1q_A           12 VQMDQVDWKPFPAAFSTGGIRWKLLHVSPE-MGSWTAIFDCPAGSSFAA-HVHVGPGEYFLTKGKMDVRGGKAAGGDTAI   89 (145)
T ss_dssp             CCGGGSCCEECCGGGEESCCEEEEEEEETT-TTEEEEEEEECTTEEECC-EEESSCEEEEEEEEEEEETTCGGGTSEEEE
T ss_pred             EccccCccEeCCcccCCCCcEEEEeeECCC-cccEEEEEEECCCCCCCc-cCCCCCEEEEEEEeEEEEcCCCEecceEeC
Confidence            346678888885    45667777743221 123578999999999997 777777789999999998776655  8999


Q ss_pred             CCcEEEeCCCCcee-EEec
Q 022278          265 AGDVLWMAPFVPQW-YAAL  282 (300)
Q Consensus       265 ~GD~i~~~~~~~H~-~~n~  282 (300)
                      +||++++|+|..|+ ..+.
T Consensus        90 ~Gd~~~~p~g~~H~p~~~~  108 (145)
T 2o1q_A           90 APGYGYESANARHDKTEFP  108 (145)
T ss_dssp             SSEEEEECTTCEESCCEEE
T ss_pred             CCEEEEECcCCccCCeECC
Confidence            99999999999999 5443

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.14  E-value=1.1e-10  Score=112.65  Aligned_cols=76  Identities=14%  Similarity=0.085  Sum_probs=69.8

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe----CCEEEEccCCcE------EEeCCCCceeEEecC-CccE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDV------LWMAPFVPQWYAALG-KTRT  287 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~----~g~~~~v~~GD~------i~~~~~~~H~~~n~G-~e~~  287 (300)
                      ++.+.+++++||+..+. |+|..+|.+||++|+|++.+    +...+.|++||+      +++|+|..||++|+| ++++
T Consensus        51 ~~s~~~~~l~pgg~~~p-h~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l  129 (397)
T 2phl_A           51 DYRLVEFRSKPETLLLP-QQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDL  129 (397)
T ss_dssp             TCEEEEEEECSSEEEEE-EEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCE
T ss_pred             cEEEEEEEECCCcCccC-EecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCcccccceEEECCCCcEEEEeCCCCCCe
Confidence            48999999999999875 67888899999999999998    678999999999      999999999999999 8999


Q ss_pred             EEEEEeec
Q 022278          288 RYLLYKDV  295 (300)
Q Consensus       288 ~fi~~kd~  295 (300)
                      ++|+..|.
T Consensus       130 ~~i~~~~~  137 (397)
T 2phl_A          130 RIIQLAMP  137 (397)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeecC
Confidence            99988764

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=99.12  E-value=1.7e-10  Score=102.41  Aligned_cols=77  Identities=12%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             Eee-CCC--CCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278          210 KLL-PQA--VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       210 ~l~-p~~--~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      .|+ |..  .+.++.+-+..+.||...|. |+|..||.||||+|++.++++ |+|.++++||++++++|++|+++ ++++
T Consensus       119 elvGP~g~~~s~~l~lG~v~l~PG~~yP~-HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v~ipsgv~Ha~r-t~de  196 (217)
T 4b29_A          119 ELAGPSGHFLTQSLRVTVGYWGPGLDYGW-HEHLPEELYSVVSGRALFHLRNAPDLMLEPGQTRFHPANAPHAMT-TLTD  196 (217)
T ss_dssp             EEEETTSSEECSSCEEEEEEECSSCEEEE-EECSSEEEEEEEEECEEEEETTSCCEEECTTCEEEECTTCCEEEE-CCSS
T ss_pred             EEECCCCCCCCCeEEEEEEEECCCCcCCC-CCCCCceEEEEEeCCEEEEECCCCEEecCCCCEEEcCCCCceeEE-ECCc
Confidence            344 643  34678888999999999997 788899999999999999999 99999999999999999999998 6899


Q ss_pred             cEE
Q 022278          286 RTR  288 (300)
Q Consensus       286 ~~~  288 (300)
                      |+.
T Consensus       197 Pll  199 (217)
T 4b29_A          197 PIL  199 (217)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            995

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=99.12  E-value=1.2e-10  Score=91.68  Aligned_cols=64  Identities=8%  Similarity=0.075  Sum_probs=53.9

Q ss_pred             EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcC-CcEEEeccCcEEEeCCCCceEEeeCCeEEEEEE
Q 022278          108 LANMQENARSALPPHDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  174 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~g-g~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v  174 (300)
                      +.+..||... .+ |+.+|++|||+|++++++ + |+++.|++||+++||++.+|+++|.++.+.+++
T Consensus        35 ~~~~~pg~~~-~h-H~~~E~~~Vl~G~~~~~i-~~g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~yv   99 (101)
T 1o5u_A           35 IWEKEVSEFD-WY-YDTNETCYILEGKVEVTT-EDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYN   99 (101)
T ss_dssp             EEEECSEEEE-EE-CSSCEEEEEEEEEEEEEE-TTCCEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred             EEEeCCCccc-cc-CCceEEEEEEeCEEEEEE-CCCCEEEECCCCEEEECCCCcEEEEeCCCeeEEEE
Confidence            4566776432 23 788999999999999999 7 999999999999999999999999666666655

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=99.12  E-value=2e-10  Score=101.99  Aligned_cols=92  Identities=17%  Similarity=0.130  Sum_probs=77.1

Q ss_pred             eEEEEecCCC---CCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-C
Q 022278           91 LGAYLITPAM---GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-E  166 (300)
Q Consensus        91 ~~~~L~sp~~---g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~  166 (300)
                      -...|+.|.-   ..++...++.++||...+.|.|..||++|||+|++++.+++++...+++||++++|+|++|.+++ +
T Consensus       116 a~~elvGP~g~~~s~~l~lG~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v~ipsgv~Ha~rt~d  195 (217)
T 4b29_A          116 GWFELAGPSGHFLTQSLRVTVGYWGPGLDYGWHEHLPEELYSVVSGRALFHLRNAPDLMLEPGQTRFHPANAPHAMTTLT  195 (217)
T ss_dssp             EEEEEEETTSSEECSSCEEEEEEECSSCEEEEEECSSEEEEEEEEECEEEEETTSCCEEECTTCEEEECTTCCEEEECCS
T ss_pred             eEEEEECCCCCCCCCeEEEEEEEECCCCcCCCCCCCCceEEEEEeCCEEEEECCCCEEecCCCCEEEcCCCCceeEEECC
Confidence            3455666632   46899999999999998889999999999999999999933899999999999999999999998 7


Q ss_pred             CeEEEEEEEeeccccCC
Q 022278          167 GSATLVVFERRYASLEN  183 (300)
Q Consensus       167 ~~a~vl~v~~~y~~~~g  183 (300)
                      +++..+|+ .+..|+..
T Consensus       196 ePllalwv-W~G~~~~~  211 (217)
T 4b29_A          196 DPILTLVL-WRGAGLGD  211 (217)
T ss_dssp             SCEEEEEE-EESTTTTC
T ss_pred             ccEEEEEE-EeCCCCCC
Confidence            88877776 35666543

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=99.08  E-value=4.7e-10  Score=89.31  Aligned_cols=69  Identities=13%  Similarity=0.027  Sum_probs=56.2

Q ss_pred             EEEEEecCCcccCc--ceeeccceEEEEEEeeEEEEeCCEE--EEccCCcEEEeCCCCceeEEecCCc-cEEEEE
Q 022278          222 IHIMDFQPGDFLNV--KEVHYNQHGLLLLEGQGIYRLGDSW--YPVQAGDVLWMAPFVPQWYAALGKT-RTRYLL  291 (300)
Q Consensus       222 ~~~~tl~PG~~~p~--~~~H~~eh~~~iL~G~G~~~~~g~~--~~v~~GD~i~~~~~~~H~~~n~G~e-~~~fi~  291 (300)
                      +.++. .+|...+.  +++|..+|.+|||+|++.++++|+.  +.+++||.+++|++++|.+.|+|++ +..+|+
T Consensus        33 i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~  106 (112)
T 2opk_A           33 IERII-SNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLA  106 (112)
T ss_dssp             EEEEE-ESSCCCCTTCCBCCSSEEEEEEEESCEEEEETTCSSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEE
T ss_pred             EEEEE-eCCccCCCCccccCCccEEEEEEeCeEEEEECCEEEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEE
Confidence            33443 45655544  2567777899999999999999999  9999999999999999999999986 565554

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.07  E-value=3.3e-10  Score=99.19  Aligned_cols=76  Identities=13%  Similarity=0.071  Sum_probs=65.8

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEEcC-----Cc--EEEeccCcEEEeCCCCceEEee--CCeEE
Q 022278          101 GSHFVMYLANMQENARSALPPHDV-ERFIFVVQGSAMLTNAS-----GV--SSKLMVDSYTYLPPNFAHSLRA--EGSAT  170 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v~g-----g~--~~~L~~Gds~yfpa~~~H~~~N--~~~a~  170 (300)
                      +..+.+.+++++||+..+.|.|.. +|++||++|++++.+.+     ++  ++.|++||.++||++..|.++|  +++++
T Consensus        69 ~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~  148 (201)
T 1fi2_A           69 TLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAY  148 (201)
T ss_dssp             TSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEE
T ss_pred             cCceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEE
Confidence            346899999999999888887875 89999999999998832     56  8999999999999999999998  57899


Q ss_pred             EEEEEe
Q 022278          171 LVVFER  176 (300)
Q Consensus       171 vl~v~~  176 (300)
                      ++++..
T Consensus       149 ~l~v~~  154 (201)
T 1fi2_A          149 MVVSFN  154 (201)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            888843

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=99.07  E-value=4.5e-09  Score=96.15  Aligned_cols=182  Identities=17%  Similarity=0.222  Sum_probs=121.8

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEEcC-C--cEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccC--C----
Q 022278          113 ENARSALPPHDVERFIFVVQGSAMLTNAS-G--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLE--N----  183 (300)
Q Consensus       113 PG~~~~~~~h~gEEf~yVLeG~v~l~v~g-g--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~--g----  183 (300)
                      |+.+...|..+.|||+|+++|.+.+.+.+ |  +...|++||.+.+|++++|+-...+.+..|+++++=.+.+  +    
T Consensus        40 pN~R~d~H~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP~gv~HsP~r~~et~gLviE~~R~~~~~D~l~wy  119 (286)
T 2qnk_A           40 PNTRKDYHIEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRYY  119 (286)
T ss_dssp             CBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEECTTCCEEEEECTTCEEEEEEECCCTTCCEEEEEE
T ss_pred             CCcCccCcCCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeCCCCCcCCcccCCeEEEEEeecCCCCCccceEEE
Confidence            44456667567899999999999999844 3  2689999999999999999987767788888876543311  1    


Q ss_pred             ---C------------------------------------CcceeeccCCCCCCcccCC----ceeEEE-Eee-------
Q 022278          184 ---H------------------------------------ITEQIVGSTDKQPLLETPG----EVFQLR-KLL-------  212 (300)
Q Consensus       184 ---~------------------------------------~p~~~~~~~~d~~~~~~~g----~~~~~~-~l~-------  212 (300)
                         .                                    .|+.+..    -|+-+.+.    .-+.++ |+.       
T Consensus       120 c~~c~~~~~e~~f~~~dl~~ql~~~~~~f~~~~~~rtc~p~~~~~~~----~~p~~~~~~~~~~pf~Lk~Wl~~h~~ei~  195 (286)
T 2qnk_A          120 VGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEQYRTGKPIPDQLLK----EPPFPLSTRSIMEPMSLDAWLDSHHRELQ  195 (286)
T ss_dssp             STTSSSEEEEEEECCSSHHHHHHHHHHHHHTSHHHHHSCCCGGGSCS----SCSSCCCCCCCCCCEEHHHHHHHTHHHHH
T ss_pred             cCCCCCEEEEEEEEEechHHhhHHHHHHHhcCcccccCCCChhhccc----CCCCCCccccccCCcCHHHHHHhhhHHHh
Confidence               0                                    0111110    01111111    111122 121       


Q ss_pred             CC---CCC-cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEE
Q 022278          213 PQ---AVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR  288 (300)
Q Consensus       213 p~---~~~-~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  288 (300)
                      ..   ++. ..+-..++-+-+|.+... +.-. +-=+++|+|+-.+++||..|.+++||.+.++++..|.+....+.-+-
T Consensus       196 s~~~~sLFg~~~eteV~l~G~Ges~~~-~~~~-d~wiWqLEGss~Vt~~~q~~~L~~~DsLLIpa~~~y~~~r~~gsv~L  273 (286)
T 2qnk_A          196 AGTPLSLFGDTYETQVIAYGQGSSEGL-RQNV-DVWLWQLEGSSVVTMGGRRLSLAPDDSLLVLAGTSYAWERTQGSVAL  273 (286)
T ss_dssp             TTCCEESSCTTSSEEEEEECSEEEEEC-CCSS-CEEEEEEESCEEEEETTEEEEECTTEEEEECTTCCEEEEECTTCEEE
T ss_pred             cCCccccccCCCceEEEEEcCCccccc-cCcC-cEEEEEEcCceEEEECCeEEeccCCCEEEecCCCeEEEEecCCeEEE
Confidence            11   121 234455666888887654 2222 55589999999999999999999999999999999999987777776


Q ss_pred             EEEEeecCCCCC
Q 022278          289 YLLYKDVNRNPL  300 (300)
Q Consensus       289 fi~~kd~nr~~~  300 (300)
                      +|.-+.-++.|+
T Consensus       274 ~I~~~p~~~~~~  285 (286)
T 2qnk_A          274 SVTQDPACKKPL  285 (286)
T ss_dssp             EEEECGGGCCSC
T ss_pred             EEEECccccCCC
Confidence            666666555553

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=99.06  E-value=1e-09  Score=83.99  Aligned_cols=60  Identities=13%  Similarity=0.231  Sum_probs=54.4

Q ss_pred             cCCCCCCCc-eEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEe
Q 022278          116 RSALPPHDV-ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER  176 (300)
Q Consensus       116 ~~~~~~h~g-EEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~  176 (300)
                      ..+.|.|+. .|++||++|++++.+ +++++.|++||++++|++.+|+++|.++++++++..
T Consensus        41 ~~~~H~H~~~~e~~~v~~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~i~~  101 (102)
T 3d82_A           41 EFVWHEHADTDEVFIVMEGTLQIAF-RDQNITLQAGEMYVIPKGVEHKPMAKEECKIMIIEP  101 (102)
T ss_dssp             ECCCBCCTTCCEEEEEEESEEEEEC-SSCEEEEETTEEEEECTTCCBEEEEEEEEEEEEEEE
T ss_pred             CCCceeCCCCcEEEEEEeCEEEEEE-CCEEEEEcCCCEEEECCCCeEeeEcCCCCEEEEEEc
Confidence            456677887 999999999999999 999999999999999999999999977888888753

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=99.04  E-value=7.4e-09  Score=93.42  Aligned_cols=166  Identities=12%  Similarity=0.069  Sum_probs=113.7

Q ss_pred             EEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceE-Eee--CCeE
Q 022278           93 AYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHS-LRA--EGSA  169 (300)
Q Consensus        93 ~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~-~~N--~~~a  169 (300)
                      +.|.-+..|+  ....|.++|+-..+..-|..+--+|||+|++.  + |+  ..|.+++|.++|+|+.-- |+-  ++++
T Consensus        82 RlLs~~d~Ga--STl~V~fpp~~~~P~Gi~~ad~E~fVL~G~i~--~-G~--~~l~~h~Y~f~PaGV~~~~~kv~~~~g~  154 (303)
T 2qdr_A           82 RLLTWHDSGA--STSRVVLPPKFEAPSGIFTADLEIFVIKGAIQ--L-GE--WQLNKHSYSFIPAGVRIGSWKVLGGEEA  154 (303)
T ss_dssp             EEEEECTTSC--EEEEEEECTTCEECCBEESSCEEEEEEESEEE--E-TT--EEECTTEEEEECTTCCBCCEEEETTSCE
T ss_pred             eecccCCCCc--ceEEEEecCCCCCCCcccccceEEEEEEeEEE--e-CC--EEecCCceEEecCCCccCceeecCCCCc
Confidence            3344455554  34577889987665542332333999999887  5 55  579999999999998664 444  8899


Q ss_pred             EEEEEEee-----ccccCCCCcce------eeccCCCCCCcccC--C-ceeEEEEeeCCCCCcceEEEEEEecCCcccCc
Q 022278          170 TLVVFERR-----YASLENHITEQ------IVGSTDKQPLLETP--G-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV  235 (300)
Q Consensus       170 ~vl~v~~~-----y~~~~g~~p~~------~~~~~~d~~~~~~~--g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~  235 (300)
                      ++||+..=     |..++...|.+      .+-+.+.++|...+  + ..+..++|-.+..  ....+++.+.||.-...
T Consensus       155 ~iL~fe~g~~pl~y~~a~~d~P~Ar~~d~I~v~Ds~~L~W~~t~~p~f~~~~~K~Lr~D~~--G~~TrLlr~~Pg~dt~~  232 (303)
T 2qdr_A          155 EILWMENGSVPLEYKYAQEDHPDARLSDFIPALDSKLLPWGKADTVQFVQANKKWLRKDIN--GGGVWLLAILPHFDNKY  232 (303)
T ss_dssp             EEEEEECSSSCCCEECCSSCCTTCCGGGCEEEEEGGGSCCEECSSSTTCSEEEEEEEECTT--SCEEEEEEECSSEECCS
T ss_pred             EEEEEecCCccccccccccCCcchhhcccceecccccCCcccCCCCCccHHHHHHhhcCCC--CCeEEEEEECCCCCCCC
Confidence            99999321     22222223332      22244456666544  3 4445555654333  55677899999988888


Q ss_pred             ceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCcee
Q 022278          236 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW  278 (300)
Q Consensus       236 ~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~  278 (300)
                      .-+|..-|+.|+|+|..           .+|++.|-+|+++|+
T Consensus       233 v~iHdy~EEvY~LeG~~-----------d~G~Y~~RPpg~~HG  264 (303)
T 2qdr_A          233 QMIQPYNEEGYCLTGYC-----------DVGDYRIVKDHYWYC  264 (303)
T ss_dssp             EEEECSCEEEEEEEEEE-----------EETTEEEETTEEEEE
T ss_pred             ceeeccceeEEEEeeec-----------cCceeeEcCCCCccC
Confidence            88898888999999976           669999999999998

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=99.04  E-value=3e-08  Score=90.84  Aligned_cols=173  Identities=15%  Similarity=0.129  Sum_probs=123.0

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEe-c-c--------CcEEEeCCCCceEEeeCCeEEEE
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKL-M-V--------DSYTYLPPNFAHSLRAEGSATLV  172 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L-~-~--------Gds~yfpa~~~H~~~N~~~a~vl  172 (300)
                      .+...+++|++|........+.|-.+..|.|.+++++ +|+++.+ . .        .|++|+|.+..-.+.+..++++.
T Consensus        28 y~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~-~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~~  106 (270)
T 2qjv_A           28 YVGFDVWQLXAGESITLPSDERERCLVLVAGLASVXA-ADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLELA  106 (270)
T ss_dssp             SCEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE-TTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEEE
T ss_pred             EeEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE-CCEEEeccccccccccCCCCcEEEECCCCEEEEEecCCceEE
Confidence            4566788899998776666677888999999999999 9999977 3 2        49999999999899987789999


Q ss_pred             EEEeeccccCCCCcceeeccCCCCCCcccC-C-ceeEEEEeeCCCCCcceEEEEEEecCCccc---Ccceeeccc-----
Q 022278          173 VFERRYASLENHITEQIVGSTDKQPLLETP-G-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFL---NVKEVHYNQ-----  242 (300)
Q Consensus       173 ~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~-g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~---p~~~~H~~e-----  242 (300)
                      +...+.   ++.-|..++. .+|++..... | ...+++.+++.+...+..+-..+|.||+.-   |. |+|...     
T Consensus       107 v~sAp~---~~~~p~r~i~-~~d~~~~~rG~g~n~R~V~~i~~~~~~a~~LlvgEv~tpgG~WSSyPp-HkHd~~~~~~e  181 (270)
T 2qjv_A          107 VCSAPG---FGELPVRLIS-PQEVGVEHRGXGRNQRLVHNILPDSQLADSLLVVEVYTNAGATSSWPA-HXHDTAVEGQE  181 (270)
T ss_dssp             EEEEEC---CSCCCCEEEC-GGGSEEEEESSGGGCEEEEEEECTTSCCSSCEEEEEEECTTCEESCSC-EECEEEETTTE
T ss_pred             EEeeec---CCcCCcEEEC-HHHCCeEeccCccchhhhhhhcCCCCCcceEEEEEEEcCCCccccCCC-cccccccCccc
Confidence            986654   4433555554 3455555443 2 333555666544434433334457788864   75 677652     


Q ss_pred             ----eEEEE-EE---eeEEEEe------CCEEEEccCCcEEEeCCCCceeEEec
Q 022278          243 ----HGLLL-LE---GQGIYRL------GDSWYPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       243 ----h~~~i-L~---G~G~~~~------~g~~~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                          |+||. +.   |-|.-++      .++.+.|+-||++.+|+|- |...+.
T Consensus       182 ~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~Gy-Hp~~a~  234 (270)
T 2qjv_A          182 TYLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXGY-HPVATI  234 (270)
T ss_dssp             EECEEEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSSB-CCEEEC
T ss_pred             ccceeEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCCc-CCCcCC
Confidence                78866 43   5666656      5789999999999999998 974443

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=99.03  E-value=1.1e-09  Score=93.13  Aligned_cols=97  Identities=10%  Similarity=0.083  Sum_probs=76.3

Q ss_pred             cCCCCCCcccC--CceeEEEEee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcE
Q 022278          192 STDKQPLLETP--GEVFQLRKLL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDV  268 (300)
Q Consensus       192 ~~~d~~~~~~~--g~~~~~~~l~-p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~  268 (300)
                      +.++++|++..  ++++..+.|. ..+.  ...+++++++||+.+|. |+|...+.+|||+|+..|..+|  ..+++||+
T Consensus        13 ~~~~~~W~~~~~~~~Gv~~~~L~~d~~~--g~~v~lvr~~pG~~~p~-H~H~g~ee~~VL~G~~~~~e~~--~~~~~Gd~   87 (159)
T 3ebr_A           13 DGNDTPWMPFAPYSNDVMVKYFKIDPVR--GETITLLKAPAGMEMPR-HHHTGTVIVYTVQGSWRYKEHD--WVAHAGSV   87 (159)
T ss_dssp             CGGGSCCEECTTTCSSSEEEEEEEETTT--TEEEEEEEECSSCBCCC-EEESSCEEEEEEESCEEETTSS--CCBCTTCE
T ss_pred             cCCcCCcEeCCCCCCCEEEEEeeEcCCC--CeEEEEEEECCCCCccc-ccCCCCEEEEEEEeEEEEeCCC--eEECCCeE
Confidence            46778888843  3566777764 2222  36788999999999997 6787788899999999875443  48899999


Q ss_pred             EEeCCCCceeEEec--CCccEEEEEEe
Q 022278          269 LWMAPFVPQWYAAL--GKTRTRYLLYK  293 (300)
Q Consensus       269 i~~~~~~~H~~~n~--G~e~~~fi~~k  293 (300)
                      ++.|+|..|+..+.  +++++..+.-|
T Consensus        88 ~~~P~g~~H~~~~~~~~~e~~~~~~~~  114 (159)
T 3ebr_A           88 VYETASTRHTPQSAYAEGPDIITFNIV  114 (159)
T ss_dssp             EEECSSEEECEEESSSSSSCEEEEEEE
T ss_pred             EEECCCCcceeEeCCCCCCCEEEEEEe
Confidence            99999999999999  78888766644

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.02  E-value=4.4e-10  Score=87.75  Aligned_cols=65  Identities=15%  Similarity=0.141  Sum_probs=54.2

Q ss_pred             EEEecCCcccCcceeecc-ceEEEEEEeeEEEEeCC-EEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          224 IMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGD-SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       224 ~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~~g-~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      .+++.||. .+. |.|.. +|.+|||+|++.+.++| +.+.+++||++++++|++|++.|.  ++++++++
T Consensus        32 ~~~~~~g~-~~~-H~H~~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~--~~~~~l~i   98 (107)
T 2i45_A           32 HLVKLLGD-YGW-HTHGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAVVPKSVSHRPRSE--NGCSLVLI   98 (107)
T ss_dssp             EEEEEEEE-CCC-BCC--CCEEEEESSSCEEEEETTSCEEEECTTEEEEECTTCCEEEEEE--EEEEEEEE
T ss_pred             EEEECCCC-Ccc-eeCCCCCEEEEEEeCEEEEEECCCcEEEECCCCEEEECCCCcEeeEeC--CCeEEEEE
Confidence            35667886 454 67777 89999999999999999 999999999999999999999995  46777765

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=98.98  E-value=1.3e-09  Score=106.86  Aligned_cols=90  Identities=13%  Similarity=0.154  Sum_probs=74.6

Q ss_pred             EEEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe--CC-----------------------
Q 022278          207 QLRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GD-----------------------  258 (300)
Q Consensus       207 ~~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~--~g-----------------------  258 (300)
                      .++.+.+.+..   ..+.+.+++++||+.++. |+|...+.+||++|+|++.+  .|                       
T Consensus        34 ~~e~~d~~~~~l~~~gvs~~R~~i~P~gl~~P-h~h~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~~~~~~~  112 (465)
T 3qac_A           34 LTEVWDSNEQEFRCAGVSVIRRTIEPHGLLLP-SFTSAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERIREQ  112 (465)
T ss_dssp             EEEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EEESSCEEEEEEECEEEEEEECTTCCCCC------------------
T ss_pred             EEEEECCCChhhcccceEEEEEEEcCCcCccc-EEcCCCEEEEEEECcEEEEEecCCCCceeecchhccccccccccccc
Confidence            34556665422   368889999999999997 66688899999999998884  21                       


Q ss_pred             -----------------EEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecCC
Q 022278          259 -----------------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  297 (300)
Q Consensus       259 -----------------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr  297 (300)
                                       +.+.+++||++++|+|+.||++|+|++|+++|+.=|.+-
T Consensus       113 ~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n  168 (465)
T 3qac_A          113 GSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN  168 (465)
T ss_dssp             ------------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTTS
T ss_pred             cccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCC
Confidence                             246899999999999999999999999999999988753

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.97  E-value=5.2e-10  Score=87.34  Aligned_cols=73  Identities=8%  Similarity=0.098  Sum_probs=61.4

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEEcCC---cEEEeccCcEEEeCCCCceEEee--CCeEEEEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDV-ERFIFVVQGSAMLTNASG---VSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE  175 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v~gg---~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~  175 (300)
                      ..+....++++||++.+.|.|.. ++++||++|+++++. ++   ++..|++||++|+|+|..|++.|  ++++.+|-|.
T Consensus        15 ~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~-~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~IeVE   93 (98)
T 3lag_A           15 DEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA-PDGTRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFLEIE   93 (98)
T ss_dssp             SSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC-TTSCEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEEEE
T ss_pred             CeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe-CCCceEEEEecCCcEEEEcCCCcEECEECCCCeEEEEEEE
Confidence            46888899999999999997765 577788899999998 55   34578999999999999999999  7888888874

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.96  E-value=2.1e-09  Score=82.22  Aligned_cols=68  Identities=13%  Similarity=0.193  Sum_probs=55.7

Q ss_pred             eEEEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          220 FNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       220 ~~~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      ..+++..+.  +..+. |.|.. .+.+||++|++.+.++|+.+.+++||++++++|++|++.|.+  +.++++.
T Consensus        31 ~~~~~~~~~--~~~~~-H~H~~~~e~~~v~~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~i   99 (102)
T 3d82_A           31 YQFKLVKVE--GEFVW-HEHADTDEVFIVMEGTLQIAFRDQNITLQAGEMYVIPKGVEHKPMAKE--ECKIMII   99 (102)
T ss_dssp             EEEEEEEEE--EECCC-BCCTTCCEEEEEEESEEEEECSSCEEEEETTEEEEECTTCCBEEEEEE--EEEEEEE
T ss_pred             CEEEEEEEC--CCCCc-eeCCCCcEEEEEEeCEEEEEECCEEEEEcCCCEEEECCCCeEeeEcCC--CCEEEEE
Confidence            344455554  45665 67776 889999999999999999999999999999999999999984  6666654

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=98.94  E-value=4.1e-09  Score=90.11  Aligned_cols=105  Identities=16%  Similarity=0.154  Sum_probs=77.9

Q ss_pred             ceeeccCCCCCCcccCC--ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEcc
Q 022278          187 EQIVGSTDKQPLLETPG--EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQ  264 (300)
Q Consensus       187 ~~~~~~~~d~~~~~~~g--~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~  264 (300)
                      ..+.-+.++++|++..+  +++.++.|.-.. .....++++.++||+.+|. |.|...+..|||+|.-.+. ++..++++
T Consensus         9 ~~v~v~~~~~~W~~~~~~~~GV~~~~L~~~~-~~g~~v~lvr~~pG~~~p~-H~H~g~ee~~VL~G~f~~~-~~~~~~~~   85 (165)
T 3cjx_A            9 KLLTVDTTAHPFLKALGGHEGTDIFPLFMDP-YNGLMVMRASFAPGLTLPL-HFHTGTVHMYTISGCWYYT-EYPGQKQT   85 (165)
T ss_dssp             SCEEEETTSSCCBCSGGGCTTEEEEEEEEET-TTTEEEEEEEECTTCBCCE-EEESSCEEEEEEESEEEET-TCTTSCEE
T ss_pred             ceEEEccccCCcEECCCCCCCEEEEEeEeCC-CCCcEEEEEEECCCCcCCc-ccCCCCEEEEEEEEEEEEC-CCceEEEC
Confidence            34556788899998752  456667664221 1235688999999999996 7888888999999998873 22257889


Q ss_pred             CCcEEEeCCCCceeEEecC--CccEEEEEEee
Q 022278          265 AGDVLWMAPFVPQWYAALG--KTRTRYLLYKD  294 (300)
Q Consensus       265 ~GD~i~~~~~~~H~~~n~G--~e~~~fi~~kd  294 (300)
                      +||+++.|+|..|+..+..  ++++..|+-|+
T Consensus        86 aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~  117 (165)
T 3cjx_A           86 AGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLS  117 (165)
T ss_dssp             TTEEEEECTTCEECEECCTTCSSCEEEEEEEE
T ss_pred             CCeEEEeCCCCceeeEeCCCCCCCcEEEEEEe
Confidence            9999999999999999975  33664444443

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.93  E-value=3.8e-09  Score=100.11  Aligned_cols=84  Identities=10%  Similarity=-0.015  Sum_probs=62.9

Q ss_pred             EEEEee-CCCCCcceEEEEEEecCCcccCc--ceeec-cceEEEEEEeeEEEEeCC-----EEEEccCCcEEEeCCCCce
Q 022278          207 QLRKLL-PQAVPFDFNIHIMDFQPGDFLNV--KEVHY-NQHGLLLLEGQGIYRLGD-----SWYPVQAGDVLWMAPFVPQ  277 (300)
Q Consensus       207 ~~~~l~-p~~~~~~~~~~~~tl~PG~~~p~--~~~H~-~eh~~~iL~G~G~~~~~g-----~~~~v~~GD~i~~~~~~~H  277 (300)
                      ..+.++ +...+..+.+. .++.|++..+.  .|.|. .+|.+|||+|++.++++|     +++.+++||+++++++++|
T Consensus        34 ~~~~l~~~~~~~~~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H  112 (350)
T 1juh_A           34 LYRFYVTGPSSGYAFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTH  112 (350)
T ss_dssp             EEEEEECHHHHTTSCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEE
T ss_pred             eEEEEecCCCCCCcEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcE
Confidence            344544 43333334333 45556665442  35555 778999999999999999     9999999999999999999


Q ss_pred             eEEecCCccEEEEEE
Q 022278          278 WYAALGKTRTRYLLY  292 (300)
Q Consensus       278 ~~~n~G~e~~~fi~~  292 (300)
                      ++.|.|+++ ++|+.
T Consensus       113 ~~~n~~~~~-~~l~v  126 (350)
T 1juh_A          113 TFQIQDPDT-EMTGV  126 (350)
T ss_dssp             EEEECSTTE-EEEEE
T ss_pred             EEEeCCCCC-EEEEE
Confidence            999999987 77764

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.93  E-value=6.1e-09  Score=88.27  Aligned_cols=78  Identities=15%  Similarity=0.183  Sum_probs=60.6

Q ss_pred             EEecCCCCCcEEEEEEEEcCCCcCCCCCC-CceEEEEEEE--CEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEE
Q 022278           94 YLITPAMGSHFVMYLANMQENARSALPPH-DVERFIFVVQ--GSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSAT  170 (300)
Q Consensus        94 ~L~sp~~g~~f~~~lv~l~PG~~~~~~~h-~gEEf~yVLe--G~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~  170 (300)
                      .+..+..+..+..+++++  |+....|.| ..+|++|||+  |++++++ +|+++.|++||++++|+|..|++.+  +++
T Consensus        37 R~l~~~~~fp~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G~g~v~i-dge~~~l~~GD~v~IPpg~~H~i~g--~l~  111 (157)
T 4h7l_A           37 RAFGHDAGTSVSVHYTQI--TKAARTHYHREHQEIYVVLDHAAHATIEL-NGQSYPLTKLLAISIPPLVRHRIVG--EAT  111 (157)
T ss_dssp             EESCGGGCCSCEEEEEEE--CSCCCCBBCSSCEEEEEEEEECTTCEEEE-TTEEEECCTTEEEEECTTCCEEEES--CEE
T ss_pred             EEeEcCCCCcEEEEEEeC--CCCccceECCCCcEEEEEEecCcEEEEEE-CCEEEEeCCCCEEEECCCCeEeeEC--CEE
Confidence            333333343455555555  444566755 4689999999  9999999 9999999999999999999999985  799


Q ss_pred             EEEEEe
Q 022278          171 LVVFER  176 (300)
Q Consensus       171 vl~v~~  176 (300)
                      +|++..
T Consensus       112 ~L~I~~  117 (157)
T 4h7l_A          112 IINIVS  117 (157)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999854

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.91  E-value=3e-09  Score=86.59  Aligned_cols=72  Identities=14%  Similarity=0.138  Sum_probs=61.2

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe-CCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      .+.+.+.+.+||... . |.|..+|.+|||+|++.+++ ||+.+.+++||++++|+|.+|.+.|.++..-.|++|
T Consensus        48 ~~~~g~w~~~pG~~~-~-~~~~~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv~~  120 (123)
T 3bcw_A           48 KVESGVWESTSGSFQ-S-NTTGYIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYTGRWEVDRHVKKIYFVT  120 (123)
T ss_dssp             TEEEEEEEEEEEEEE-C-CCTTEEEEEEEEEEEEEEECTTCCEEEEETTCEEEECTTCCCEEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEECCCcee-e-EcCCCcEEEEEEEEEEEEEECCCeEEEECCCCEEEECCCCeEEEEECCceeEEEEEE
Confidence            466678889999764 2 34444789999999999999 999999999999999999999999998877777765

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=98.81  E-value=1e-08  Score=101.38  Aligned_cols=89  Identities=11%  Similarity=0.193  Sum_probs=73.1

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe---C-CE---------------------
Q 022278          208 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---G-DS---------------------  259 (300)
Q Consensus       208 ~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~---~-g~---------------------  259 (300)
                      +..+.+.+..   -+..+.+++++||+.++. |+|...+++||++|+|++.+   + .+                     
T Consensus        31 ~e~~~~~~~~L~~~gvs~~R~~i~pggl~lP-h~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~~~~d~~q  109 (496)
T 3ksc_A           31 IETWNPNNKQFRCAGVALSRATLQRNALRRP-YYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQ  109 (496)
T ss_dssp             EEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EEESSCEEEEEEECCEEEEEECTTCCCC---------------CCCCC
T ss_pred             EEeccccchhhccCCceEEEEEecCCCEeCc-eEcCCCEEEEEEeCceEEEEEeCCCCccchhhhhcccccccccccchh
Confidence            4444444322   368899999999999886 56688899999999999887   3 23                     


Q ss_pred             -EEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecCC
Q 022278          260 -WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  297 (300)
Q Consensus       260 -~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr  297 (300)
                       .+.+++||++.+|+|.+||++|.|+++++.|+.=|+|-
T Consensus       110 k~~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n  148 (496)
T 3ksc_A          110 KVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRS  148 (496)
T ss_dssp             CEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTC
T ss_pred             eeeccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCc
Confidence             45999999999999999999999999999999888763

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=98.76  E-value=1.7e-08  Score=86.22  Aligned_cols=103  Identities=13%  Similarity=0.097  Sum_probs=72.9

Q ss_pred             eeEeCCCCeeeccCCC-CCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEecc
Q 022278           71 HALITPESHVLSPLPE-WTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMV  149 (300)
Q Consensus        71 ~av~~~e~~~~~~~p~-~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~  149 (300)
                      +..+..++..+...+. ..+.....|.... +....+.++.++||+..+.|.|.++|++|||+|+....  ++..+.+++
T Consensus        10 ~v~v~~~~~~W~~~~~~~~GV~~~~L~~~~-~~g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~~--~~~~~~~~a   86 (165)
T 3cjx_A           10 LLTVDTTAHPFLKALGGHEGTDIFPLFMDP-YNGLMVMRASFAPGLTLPLHFHTGTVHMYTISGCWYYT--EYPGQKQTA   86 (165)
T ss_dssp             CEEEETTSSCCBCSGGGCTTEEEEEEEEET-TTTEEEEEEEECTTCBCCEEEESSCEEEEEEESEEEET--TCTTSCEET
T ss_pred             eEEEccccCCcEECCCCCCCEEEEEeEeCC-CCCcEEEEEEECCCCcCCcccCCCCEEEEEEEEEEEEC--CCceEEECC
Confidence            3445555544443331 3345555553222 22345679999999999989999999999999999852  332578999


Q ss_pred             CcEEEeCCCCceEEeeCC----eEEEEEEEe
Q 022278          150 DSYTYLPPNFAHSLRAEG----SATLVVFER  176 (300)
Q Consensus       150 Gds~yfpa~~~H~~~N~~----~a~vl~v~~  176 (300)
                      ||+++.|++..|...+.+    +|.++|+.+
T Consensus        87 Gd~~~~P~g~~H~~~a~~~~~~gci~l~v~~  117 (165)
T 3cjx_A           87 GCYLYEPGGSIHQFNTPRDNEGQTEVIFMLS  117 (165)
T ss_dssp             TEEEEECTTCEECEECCTTCSSCEEEEEEEE
T ss_pred             CeEEEeCCCCceeeEeCCCCCCCcEEEEEEe
Confidence            999999999999998733    787777755

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=98.76  E-value=8.1e-09  Score=86.08  Aligned_cols=83  Identities=16%  Similarity=0.141  Sum_probs=64.7

Q ss_pred             cceEEEEec-CCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE--EEeccCcEEEeCCCCceE-Ee
Q 022278           89 NTLGAYLIT-PAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS--SKLMVDSYTYLPPNFAHS-LR  164 (300)
Q Consensus        89 ~~~~~~L~s-p~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~--~~L~~Gds~yfpa~~~H~-~~  164 (300)
                      +....+|.. +..|.  .+.+++++||+..+.|.|.++|.+|||+|+.+... ++..  +.+++||+++.|++..|. ..
T Consensus        30 Gv~~~~L~~~~~~g~--~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~~-g~~~~~~~~~~Gd~~~~p~g~~H~p~~  106 (145)
T 2o1q_A           30 GIRWKLLHVSPEMGS--WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRG-GKAAGGDTAIAPGYGYESANARHDKTE  106 (145)
T ss_dssp             CCEEEEEEEETTTTE--EEEEEEECTTEEECCEEESSCEEEEEEEEEEEETT-CGGGTSEEEESSEEEEECTTCEESCCE
T ss_pred             CcEEEEeeECCCccc--EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEEcC-CCEecceEeCCCEEEEECcCCccCCeE
Confidence            455666644 33332  25678999999999998888888999999999775 6666  899999999999999999 55


Q ss_pred             eCCeEEEEEE
Q 022278          165 AEGSATLVVF  174 (300)
Q Consensus       165 N~~~a~vl~v  174 (300)
                      +.+.+.++.+
T Consensus       107 ~~e~~~~l~~  116 (145)
T 2o1q_A          107 FPVASEFYMS  116 (145)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            5666766655

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.73  E-value=6.6e-08  Score=79.70  Aligned_cols=80  Identities=15%  Similarity=0.128  Sum_probs=60.2

Q ss_pred             eCCCCCcc-eEEEEEEecCCcccCc----ceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCC-c
Q 022278          212 LPQAVPFD-FNIHIMDFQPGDFLNV----KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK-T  285 (300)
Q Consensus       212 ~p~~~~~~-~~~~~~tl~PG~~~p~----~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e  285 (300)
                      +|.+.-.+ ........+|+-...+    .|.|..-+.+||++|+|.+.+||+.+++++||+++++||++|.+.+.++ +
T Consensus         4 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~p~~h~~~~i~~v~~G~~~~~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~~~~   83 (164)
T 2arc_A            4 LPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAR   83 (164)
T ss_dssp             STTCCCSSSCEEEEEEEETTSTTCSCEEETTCCSSEEEEEEEEECEEEEETTEEEEECTTCEEEECTTCCEEEEECTTSS
T ss_pred             cccchhhhhhhhcceeeccCCchhhhhccccCCCceEEEEEEEeEEEEEECCEEEEecCCeEEEEcCCCCEEEEeCCCCC
Confidence            34444333 3346666677655321    2456666789999999999999999999999999999999999999874 6


Q ss_pred             cEEEEE
Q 022278          286 RTRYLL  291 (300)
Q Consensus       286 ~~~fi~  291 (300)
                      ++++++
T Consensus        84 ~~~~~~   89 (164)
T 2arc_A           84 EWYHQW   89 (164)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            666654

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.72  E-value=4.8e-08  Score=85.32  Aligned_cols=69  Identities=17%  Similarity=0.417  Sum_probs=57.2

Q ss_pred             EEEEEEecCCc----------ccCcceeeccceEEEEEEeeEEEEeCCE---EE--EccCCcEEEeCCCCceeEEecCCc
Q 022278          221 NIHIMDFQPGD----------FLNVKEVHYNQHGLLLLEGQGIYRLGDS---WY--PVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       221 ~~~~~tl~PG~----------~~p~~~~H~~eh~~~iL~G~G~~~~~g~---~~--~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      ...++++.|+.          ..+ .|+|..+|.+||++|+|.+.++|+   |+  .+++||+|++|+|++|++.+..+.
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~-~H~H~~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~  153 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFE-EHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKN  153 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHS-CEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTC
T ss_pred             ceeEEEECCCcCcchhhhhccCCc-ceECCcceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCCC
Confidence            45567777875          124 478888999999999999999974   65  899999999999999999998777


Q ss_pred             cEEEE
Q 022278          286 RTRYL  290 (300)
Q Consensus       286 ~~~fi  290 (300)
                      .++-|
T Consensus       154 ~~~ai  158 (191)
T 1vr3_A          154 YVKAM  158 (191)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            77665

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=98.72  E-value=3.7e-08  Score=95.65  Aligned_cols=79  Identities=11%  Similarity=0.105  Sum_probs=67.8

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe----CCEEEEccCCcEEEeCCCCceeEEecCC-ccEEEEEE
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLLY  292 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~~  292 (300)
                      ..+.+.+++++||+.++.| |..-++.+||++|+|++.+    +-..+.|++||++++|+|..||++|+|+ +++.++++
T Consensus        42 ~~~~l~~~~l~p~gl~~Ph-h~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l  120 (418)
T 3s7i_A           42 QNHRIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKI  120 (418)
T ss_dssp             TTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEE
T ss_pred             cceEEEEEEecCCceeeee-eCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEe
Confidence            3678889999999999874 4456678999999999987    5678999999999999999999999876 68999998


Q ss_pred             eecCC
Q 022278          293 KDVNR  297 (300)
Q Consensus       293 kd~nr  297 (300)
                      .|...
T Consensus       121 ~~~s~  125 (418)
T 3s7i_A          121 SMPVN  125 (418)
T ss_dssp             EEESS
T ss_pred             ecCcC
Confidence            77543

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=98.71  E-value=4.5e-08  Score=96.08  Aligned_cols=89  Identities=12%  Similarity=0.102  Sum_probs=73.2

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC--------------------------
Q 022278          208 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--------------------------  258 (300)
Q Consensus       208 ~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--------------------------  258 (300)
                      ++.+.+.+..   -++.+.+++++||+.++. |+|.-.+.+||++|+|++.+=.                          
T Consensus        28 ~e~w~~~~~~L~~~gvs~~r~~i~p~Gl~lP-h~~~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~~~~~~~~  106 (466)
T 3kgl_A           28 IEVWDHHAPQLRCSGVSFVRYIIESKGLYLP-SFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQG  106 (466)
T ss_dssp             EEECCTTSHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC---------
T ss_pred             EEEECCCChhhccCCeEEEEEEECCCCEeCC-eeCCCCeEEEEEeCeEEEEEecCCCcchhhcccccccccccccccccc
Confidence            4445565422   378999999999999986 6778889999999999776210                          


Q ss_pred             --------------------------------------EEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecCC
Q 022278          259 --------------------------------------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  297 (300)
Q Consensus       259 --------------------------------------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr  297 (300)
                                                            +.+.|++||++++|+|.+||++|.|+++|++|+.=|.+-
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~d~~n  183 (466)
T 3kgl_A          107 QGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLAS  183 (466)
T ss_dssp             --------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEEESSS
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEEEEcCCC
Confidence                                                  225899999999999999999999999999999998853

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.62  E-value=2.3e-08  Score=86.58  Aligned_cols=55  Identities=18%  Similarity=0.479  Sum_probs=47.8

Q ss_pred             ceeeccceEEEEEEeeEEEEe--CCEEEE--ccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278          236 KEVHYNQHGLLLLEGQGIYRL--GDSWYP--VQAGDVLWMAPFVPQWYAALGKTRTRYL  290 (300)
Q Consensus       236 ~~~H~~eh~~~iL~G~G~~~~--~g~~~~--v~~GD~i~~~~~~~H~~~n~G~e~~~fi  290 (300)
                      .|+|..+|.+||++|+|.+.+  ||+|+.  +++||+|++|+|++|++.+..+..++-+
T Consensus        95 ~H~H~~~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~i  153 (179)
T 1zrr_A           95 EHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAI  153 (179)
T ss_dssp             CBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEE
T ss_pred             ceECChheEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCCCeEeeecCCCceEEEE
Confidence            378888999999999999988  899865  9999999999999999998766555544

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.59  E-value=7.6e-08  Score=90.12  Aligned_cols=74  Identities=16%  Similarity=0.199  Sum_probs=67.2

Q ss_pred             EEEEEEecCCcccCcceeeccceEEEEEEeeEEE----EeCCEEEEccC-C---cEEEeCCCCceeEEecCCccEEEEEE
Q 022278          221 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY----RLGDSWYPVQA-G---DVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       221 ~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~----~~~g~~~~v~~-G---D~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      .+...+.+||...+.|-|+.+.+.++|++|++.+    ..+|+|+.+.. |   |.+|||+|..|+++|+|++++++++.
T Consensus       273 q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~~  352 (369)
T 3st7_A          273 QVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMW  352 (369)
T ss_dssp             EEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEEE
T ss_pred             eEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEEEe
Confidence            3456788999999998888888999999999999    78999999999 9   99999999999999999999999886


Q ss_pred             ee
Q 022278          293 KD  294 (300)
Q Consensus       293 kd  294 (300)
                      =+
T Consensus       353 ~~  354 (369)
T 3st7_A          353 VN  354 (369)
T ss_dssp             ES
T ss_pred             cC
Confidence            54

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=98.53  E-value=2.8e-07  Score=91.45  Aligned_cols=89  Identities=11%  Similarity=0.088  Sum_probs=72.9

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC---------------------------
Q 022278          208 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---------------------------  257 (300)
Q Consensus       208 ~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~---------------------------  257 (300)
                      +..+.+....   -...+.+++|+|||-.+. |+|.-.+.+||++|+|++-+=                           
T Consensus        33 ~e~w~~~~p~l~~~Gvs~~R~~i~p~Gl~lP-h~~~a~el~yV~qG~g~~G~v~Pgcpet~~~~~~~~~~~~~~~~~~~~  111 (531)
T 3fz3_A           33 IETWNFNQGDFQCAGVAASRITIQRNGLHLP-SYSNAPQLIYIVQGRGVLGAVFSGCPETFEESQQSSQQGRQQEQEQER  111 (531)
T ss_dssp             EEECCTTSHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEECEEEEEECCTTCCCCEECCCC--------------
T ss_pred             EEEeCCCChhhccCcceEEEEEecCCCEeCC-ccCCCCeEEEEEECcEEEEEEcCCCccccccccccccccccccccccc
Confidence            3344554333   358899999999999986 788888999999999866421                           


Q ss_pred             -----------------------------------------------------------CEEEEccCCcEEEeCCCCcee
Q 022278          258 -----------------------------------------------------------DSWYPVQAGDVLWMAPFVPQW  278 (300)
Q Consensus       258 -----------------------------------------------------------g~~~~v~~GD~i~~~~~~~H~  278 (300)
                                                                                 -+.+.|++||+|.+|+|+.||
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~vr~GDviaiPaG~~~w  191 (531)
T 3fz3_A          112 QQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIREGDVVAIPAGVAYW  191 (531)
T ss_dssp             -----------------------------------------------------CCSCEESCCEEEETTEEEEECTTCCEE
T ss_pred             cccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceeeecccCCcEEEECCCCeEE
Confidence                                                                       135789999999999999999


Q ss_pred             EEecCCccEEEEEEeecCC
Q 022278          279 YAALGKTRTRYLLYKDVNR  297 (300)
Q Consensus       279 ~~n~G~e~~~fi~~kd~nr  297 (300)
                      ++|.|+++++.++.-|+|-
T Consensus       192 ~yN~G~~~l~iv~~~Dt~n  210 (531)
T 3fz3_A          192 SYNDGDQELVAVNLFHVSS  210 (531)
T ss_dssp             EECCSSSCEEEEEEEETTC
T ss_pred             EEeCCCceEEEEEEEcccc
Confidence            9999999999999999864

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.52  E-value=2.5e-07  Score=79.25  Aligned_cols=70  Identities=24%  Similarity=0.359  Sum_probs=58.0

Q ss_pred             EcCCCcCCCCCCCceEEEEEEECEEEEEEcC-C--cEEEeccCcEEEeCCCCceEEeeCC-eEEEEEEEeeccc
Q 022278          111 MQENARSALPPHDVERFIFVVQGSAMLTNAS-G--VSSKLMVDSYTYLPPNFAHSLRAEG-SATLVVFERRYAS  180 (300)
Q Consensus       111 l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~g-g--~~~~L~~Gds~yfpa~~~H~~~N~~-~a~vl~v~~~y~~  180 (300)
                      -.|+++...|.|+.||++|||+|++.+.+.+ |  +...|++||.+.+|+|++|+-...+ .+..++++++-.+
T Consensus        42 ~Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvpH~P~r~~~e~~~lviE~~r~~  115 (174)
T 1yfu_A           42 GGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPEAGSACLVIERQRPA  115 (174)
T ss_dssp             CSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCCTTCEEEEEEECCCT
T ss_pred             cCCCcCccCcCCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCCcCccccCCCCEEEEEEeCCCC
Confidence            3566677888899999999999999999833 2  4899999999999999999986554 7888888766544

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=98.51  E-value=3e-07  Score=77.93  Aligned_cols=98  Identities=11%  Similarity=0.080  Sum_probs=69.8

Q ss_pred             EeCCCCeeeccCC-CCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCc
Q 022278           73 LITPESHVLSPLP-EWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDS  151 (300)
Q Consensus        73 v~~~e~~~~~~~p-~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gd  151 (300)
                      ++..++..+...+ ...+.....|.....+ .....+++++||+..+.|.|.+.|.+|||+|+..+.- .+  ..+++||
T Consensus        11 ~v~~~~~~W~~~~~~~~Gv~~~~L~~d~~~-g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~e-~~--~~~~~Gd   86 (159)
T 3ebr_A           11 CLDGNDTPWMPFAPYSNDVMVKYFKIDPVR-GETITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYKE-HD--WVAHAGS   86 (159)
T ss_dssp             CCCGGGSCCEECTTTCSSSEEEEEEEETTT-TEEEEEEEECSSCBCCCEEESSCEEEEEEESCEEETT-SS--CCBCTTC
T ss_pred             EEcCCcCCcEeCCCCCCCEEEEEeeEcCCC-CeEEEEEEECCCCCcccccCCCCEEEEEEEeEEEEeC-CC--eEECCCe
Confidence            3444444443322 2344566666432222 3556789999999999999989999999999988542 32  4799999


Q ss_pred             EEEeCCCCceEEeeC----CeEEEEEE
Q 022278          152 YTYLPPNFAHSLRAE----GSATLVVF  174 (300)
Q Consensus       152 s~yfpa~~~H~~~N~----~~a~vl~v  174 (300)
                      +++.|+|..|+..+.    +.+.++++
T Consensus        87 ~~~~P~g~~H~~~~~~~~~e~~~~~~~  113 (159)
T 3ebr_A           87 VVYETASTRHTPQSAYAEGPDIITFNI  113 (159)
T ss_dssp             EEEECSSEEECEEESSSSSSCEEEEEE
T ss_pred             EEEECCCCcceeEeCCCCCCCEEEEEE
Confidence            999999999999875    67877775

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=98.42  E-value=1.7e-05  Score=71.51  Aligned_cols=167  Identities=12%  Similarity=0.105  Sum_probs=112.7

Q ss_pred             EEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC--CceEEee---CCeEEE--EEEEeecc
Q 022278          108 LANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA---EGSATL--VVFERRYA  179 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~--~~H~~~N---~~~a~v--l~v~~~y~  179 (300)
                      ..++.||...+.|+|. -|.+-||++|+++=.-.-|...++++||.-+..||  +-|+=.|   +++.++  |||. +- 
T Consensus        45 ~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlWv~-P~-  122 (242)
T 1tq5_A           45 DDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIM-PE-  122 (242)
T ss_dssp             EEEECTTCEEEEEEECSCEEEEEEEESEEEEEESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEEC-CS-
T ss_pred             cceeCCCCcCCCcCCCCcEEEEEEEEeEEEEEeCCCCcEEECCCcEEEEECCCCcEEEEEcCCCCCeEEEEEEEEc-ch-
Confidence            5677898777778765 47799999999998863378899999999999776  6788777   245554  4773 32 


Q ss_pred             ccCCCCcceeeccCCCCCCcccCCceeEEEEee-CCC------CCcceEEEEEEecCCcccCcceeeccceEEEEEEeeE
Q 022278          180 SLENHITEQIVGSTDKQPLLETPGEVFQLRKLL-PQA------VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQG  252 (300)
Q Consensus       180 ~~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~-p~~------~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G  252 (300)
                       .++.+|..---.   +|... + +    +.+. +..      ...+..+-..+|+||+.+-+.-...+.--+|+++|+.
T Consensus       123 -~k~~~P~y~~~~---~p~~~-~-g----~~iag~~g~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~v~~G~v  192 (242)
T 1tq5_A          123 -ENGITPRYEQRR---FDAVQ-G-K----QLVLSPDARDGSLKVHQDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNV  192 (242)
T ss_dssp             -SCSCCCEEEEEC---CCCCS-S-E----EEEEESSCGGGCEECSSSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEE
T ss_pred             -hcCCCCcceeec---CCchh-C-C----EEEEecCCCCCcEeccCCCEEEEEEECCCCEEEeecCCCcEEEEEEccCcE
Confidence             244555544332   44322 2 2    3322 211      1235667778999999874422222334578999977


Q ss_pred             EEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          253 IYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       253 ~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      .+  ||+  .+++||.+.+.++..=.+.+  .++.++|++
T Consensus       193 ~v--~g~--~l~~gd~~~~~~~~~l~l~a--~~~a~~Ll~  226 (242)
T 1tq5_A          193 TI--NGV--KASTSDGLAIWDEQAISIHA--DSDSEVLLF  226 (242)
T ss_dssp             EE--TTE--EEETTCEEEEESCSCEEEEE--SSSEEEEEE
T ss_pred             EE--CCE--EeCCCCEEEECCCCeEEEEe--CCCCEEEEE
Confidence            55  774  79999999999877667776  467888775

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=98.39  E-value=2.2e-05  Score=72.03  Aligned_cols=162  Identities=8%  Similarity=0.091  Sum_probs=109.0

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCc-eEEee---CCeEEEEEEEeeccccCCCCcceeeccCCCC
Q 022278          121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLRA---EGSATLVVFERRYASLENHITEQIVGSTDKQ  196 (300)
Q Consensus       121 ~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~-H~~~N---~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~  196 (300)
                      ....|-.+..|.|..++++ +|+++.|..-|++|+|.|.. -.+..   ..++++.+.+.+.   .+.-|..++. .+|+
T Consensus        76 l~~rE~~iV~l~G~~~V~v-dG~~f~lg~~dalYVp~g~~~v~~as~da~~~a~fav~sAPa---~~~~P~r~I~-~~dv  150 (282)
T 1xru_A           76 LERRELGVINIGGAGTITV-DGQCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPA---HTTYPTKKVT-PDEV  150 (282)
T ss_dssp             TTTEEEEEEECSSCEEEEE-TTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEEC---SSCCCCEEEC-HHHH
T ss_pred             cCCcEEEEEEccCeEEEEE-CCEEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEcccc---CCCCCCEEEC-HHHC
Confidence            4566777888999999999 99999999999999999997 55664   3479998885554   4433555554 3444


Q ss_pred             CCcccCC----ceeEEEEeeCCC-CC-cceEEEEEEecCCc---ccCcceeec--cceEEEE-EE--eeE--EEEeCCEE
Q 022278          197 PLLETPG----EVFQLRKLLPQA-VP-FDFNIHIMDFQPGD---FLNVKEVHY--NQHGLLL-LE--GQG--IYRLGDSW  260 (300)
Q Consensus       197 ~~~~~~g----~~~~~~~l~p~~-~~-~~~~~~~~tl~PG~---~~p~~~~H~--~eh~~~i-L~--G~G--~~~~~g~~  260 (300)
                      .......    ...++..+++++ .. -+..|-...+.||+   +.|. |+|.  +|+.||. +.  |.+  ++.-.++.
T Consensus       151 ~~~~rG~~~~sn~R~I~~il~~~~~~~~qllmg~evltpgg~WSSyPp-HkHDrr~EeyyYF~l~~~gfv~q~~g~p~Et  229 (282)
T 1xru_A          151 SPVTLGDNLTSNRRTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPC-HTHERRMEVYFYFNMDDDACVFHMMGQPQET  229 (282)
T ss_dssp             CCEEECCGGGTCCEEEEEEESTTTCCCSSCEEEEEEECTTCCEESCSE-EECTTEEEEEEEESCCTTCCEEEEEEETTEE
T ss_pred             CeeeccCCCCCCcEEEEEeeCCCCCchhhEEEEEEEEeCCCCcCCCCC-ccCCCCceEEEEEEeCCCCEEEEEeCCCCCe
Confidence            4444422    234666677543 33 45667778888997   3564 6774  4556665 22  222  23333444


Q ss_pred             --EEccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278          261 --YPVQAGDVLWMAPFVPQWYAALGKTRTRYL  290 (300)
Q Consensus       261 --~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  290 (300)
                        ..|+-||++.+|++-+|+  ..|-+...||
T Consensus       230 rhi~V~n~daVlvP~wh~h~--~~G~~~Y~yl  259 (282)
T 1xru_A          230 RHIVMHNEQAVISPSWSIHS--GVGTKAYTFI  259 (282)
T ss_dssp             EEEEECSSEEEEECTTCEEE--EEESSCCEEE
T ss_pred             eEEEEECCCEEEeCCCCCCC--CCCccceEEE
Confidence              467999999999877777  4477776666

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.38  E-value=1.2e-06  Score=78.24  Aligned_cols=90  Identities=16%  Similarity=0.147  Sum_probs=67.3

Q ss_pred             cCCCCCCcccCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEe
Q 022278          192 STDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWM  271 (300)
Q Consensus       192 ~~~d~~~~~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~  271 (300)
                      +.++.+|.+.+.+++..+.|.-.+....+.++++.++||+.+|. |+|...+..|||+|.-.  +++.  ...+||+++.
T Consensus        15 ~~~~~~W~~~~~~Gv~~~~L~~~~~e~g~~~~lvr~~pG~~~p~-H~H~g~Ee~~VL~G~f~--d~~~--~~~~Gd~~~~   89 (223)
T 3o14_A           15 DTDQLEWRPSPMKGVERRMLDRIGGEVARATSIVRYAPGSRFSA-HTHDGGEEFIVLDGVFQ--DEHG--DYPAGTYVRN   89 (223)
T ss_dssp             EGGGSCCEECSSTTEEEEEEEEESSSSCEEEEEEEECTTEECCC-EECTTCEEEEEEEEEEE--ETTE--EEETTEEEEE
T ss_pred             eCccCCceeCCCCCEEEEEeecCCCccccEEEEEEECCCCCccc-ccCCCCEEEEEEEeEEE--ECCe--EECCCeEEEe
Confidence            67888898875445566666432212235677899999999997 78877788999999854  5554  6679999999


Q ss_pred             CCCCceeEEecCCccEE
Q 022278          272 APFVPQWYAALGKTRTR  288 (300)
Q Consensus       272 ~~~~~H~~~n~G~e~~~  288 (300)
                      |+|..|+..+  ++.+.
T Consensus        90 P~g~~H~p~a--~~gc~  104 (223)
T 3o14_A           90 PPTTSHVPGS--AEGCT  104 (223)
T ss_dssp             CTTCEECCEE--SSCEE
T ss_pred             CCCCccccEe--CCCCE
Confidence            9999999887  44444

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.37  E-value=1.1e-06  Score=75.61  Aligned_cols=78  Identities=12%  Similarity=0.154  Sum_probs=64.8

Q ss_pred             eEEEEEEecCCcccCcceeec------cceEEEEEEeeEEEEeCCEE---------------------EEccCCcEEEeC
Q 022278          220 FNIHIMDFQPGDFLNVKEVHY------NQHGLLLLEGQGIYRLGDSW---------------------YPVQAGDVLWMA  272 (300)
Q Consensus       220 ~~~~~~tl~PG~~~p~~~~H~------~eh~~~iL~G~G~~~~~g~~---------------------~~v~~GD~i~~~  272 (300)
                      +...++.+.||..+|.|.|..      .+|.+++++|+..++++|++                     ..++|||.+.++
T Consensus        53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvtIp  132 (175)
T 2y0o_A           53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIP  132 (175)
T ss_dssp             EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEESSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEEEC
T ss_pred             ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEECCccccCcceeccCCceeeecCCcEEEECCCCEEEEC
Confidence            778899999999999855555      66778899999999999866                     499999999999


Q ss_pred             CCCceeEEecCCccEEEEEEeecCCC
Q 022278          273 PFVPQWYAALGKTRTRYLLYKDVNRN  298 (300)
Q Consensus       273 ~~~~H~~~n~G~e~~~fi~~kd~nr~  298 (300)
                      ||.+|+|.| |.+.+...-+--+|.|
T Consensus       133 pg~~H~f~a-geegvli~EvSt~~dD  157 (175)
T 2y0o_A          133 PNTKHWFQA-GEEGAVVTEMSSTSTD  157 (175)
T ss_dssp             TTCCEEEEE-EEEEEEEEEEEECCCG
T ss_pred             CCCcEEEEe-CCCCEEEEEEeCCCCC
Confidence            999999999 5555766666666654

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.37  E-value=1.1e-06  Score=75.20  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=55.4

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEEcC-C------cEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeecc
Q 022278          112 QENARSALPPHDVERFIFVVQGSAMLTNAS-G------VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYA  179 (300)
Q Consensus       112 ~PG~~~~~~~h~gEEf~yVLeG~v~l~v~g-g------~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~  179 (300)
                      .|+.+...|.++.||++||++|++.|.+.+ |      +...|++||.+.+|++++|+-...+.+..++++++=.
T Consensus        42 GPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~e~v~lviErkR~  116 (176)
T 1zvf_A           42 GPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVGIVVEQDRP  116 (176)
T ss_dssp             SSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEEEEEEECCC
T ss_pred             CCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCcccCCcEEEEEEecCC
Confidence            455667778889999999999999999833 4      4799999999999999999975556677777766544

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=98.36  E-value=4e-05  Score=70.48  Aligned_cols=175  Identities=8%  Similarity=0.128  Sum_probs=109.1

Q ss_pred             EEEEcCCCcCCCC--CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCc-eEEee---CCeEEEEEEEeecccc
Q 022278          108 LANMQENARSALP--PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLRA---EGSATLVVFERRYASL  181 (300)
Q Consensus       108 lv~l~PG~~~~~~--~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~-H~~~N---~~~a~vl~v~~~y~~~  181 (300)
                      .++|++|......  ....|-.+..|.|..++++ +|+++.|..-|++|+|.|.. -.+.+   ..+|++.+.+.+   +
T Consensus        61 ~l~L~~~~~~~~~~fl~~rE~~iV~lgG~~~V~v-dg~~f~lg~~dalYVp~G~~~v~~as~d~~~~a~fav~sAP---a  136 (289)
T 1ywk_A           61 ELEIILDKELGVDYFLERRELGVINIGGPGFIEI-DGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISCVP---A  136 (289)
T ss_dssp             CEECCCSGGGTSSSTTTTEEEEEEECSSCEEEEE-TTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEE---C
T ss_pred             eEEcCCCceecccccCCCcEEEEEEccCeEEEEE-CCEEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEccc---c
Confidence            3456666444433  4566777888999999999 99999999999999999977 56665   457999888555   4


Q ss_pred             CCCCcceeeccCCCCCCcccCC----ceeEEEEeeC-CCCC-cceEEEEEEecCCc---ccCcceeec--cceEEEE-EE
Q 022278          182 ENHITEQIVGSTDKQPLLETPG----EVFQLRKLLP-QAVP-FDFNIHIMDFQPGD---FLNVKEVHY--NQHGLLL-LE  249 (300)
Q Consensus       182 ~g~~p~~~~~~~~d~~~~~~~g----~~~~~~~l~p-~~~~-~~~~~~~~tl~PG~---~~p~~~~H~--~eh~~~i-L~  249 (300)
                      .+.-|..++. .+|++......    ...++..+++ +... -+..|-...+.||+   +.|. |+|.  +|..||. +.
T Consensus       137 ~~~~P~r~I~-~~dv~~~~rG~~~~sN~R~I~~il~~~~~~s~qllmg~evltpGg~WSSyPp-HkHDrr~E~yyYF~l~  214 (289)
T 1ywk_A          137 HHKYPNVKIS-IDEITPMETGDPLTLNQRKIYQYIHPNVCESCQLQMGYTILEPGSAWNTMPC-HTHERRMEAYVYFDME  214 (289)
T ss_dssp             SSCCCCEEEC-TTTCCCCCBCCGGGTCCEEEEEEESTTTCCCSSCEEEEEEECTTCCCCC---------CEEEEEEESCC
T ss_pred             CCCCCCEEEC-HHHCCeeeccCCCCCCcEEEEEeeCCCCCchheEEEEEEEEeCCCCcCCCCC-ccCCCCCeeEEEEEeC
Confidence            4434555555 55665555432    2346666775 4333 45667777888997   3554 6775  3333443 23


Q ss_pred             ee-EEEEeCC---EE--EEccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278          250 GQ-GIYRLGD---SW--YPVQAGDVLWMAPFVPQWYAALGKTRTRYL  290 (300)
Q Consensus       250 G~-G~~~~~g---~~--~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  290 (300)
                      .+ ..+.+.|   +.  ..|+-||++.+|++--|.  ..|.....||
T Consensus       215 p~~~v~h~~g~pdEtrh~~V~n~daVlvP~wgyHp--~~Gt~~Y~yl  259 (289)
T 1ywk_A          215 EDTRIFHMMGKPDETKHLVMSNEQAAISPSWSIHS--GVGTSNYSFI  259 (289)
T ss_dssp             TTCCEEEEESSTTSCEEEEECTTEEEEECTTSCCC--EEESSCCEEE
T ss_pred             CCCeEEEECCCCCceEEEEEECCCEEEeCCCcccC--CCCCcCeEEE
Confidence            22 2444433   33  678999999999976664  3444444444

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=98.35  E-value=7.6e-07  Score=75.08  Aligned_cols=86  Identities=12%  Similarity=0.029  Sum_probs=66.5

Q ss_pred             cCCCCCCcccC----CceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC--EEEEccC
Q 022278          192 STDKQPLLETP----GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQA  265 (300)
Q Consensus       192 ~~~d~~~~~~~----g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--~~~~v~~  265 (300)
                      +.++++|.+.+    ..++.++.|--. ......+.++.++||+.+|. |.|...+.+|||+|.-.+.-++  .....++
T Consensus        15 ~~d~~~W~p~P~~l~~~Gv~~k~L~~~-~e~g~~t~lvr~~pG~~~p~-H~H~g~ee~~VL~G~~~~~~Gd~~~~~~~~a   92 (153)
T 3bal_A           15 KISDNNYVPFPEAFSDGGITWQLLHSS-PETSSWTAIFNCPAGSSFAS-HIHAGPGEYFLTKGKMEVRGGEQEGGSTAYA   92 (153)
T ss_dssp             ECCGGGCEECCGGGEESCCEEEEEEEE-TTTTEEEEEEEECTTEEECC-EEESSCEEEEEEESEEEETTCGGGTSEEEES
T ss_pred             ccccCceecCCCccCCCCeEEEEEEEC-CccceEEEEEEeCCCCCccC-ccCCCCEEEEEEEEEEEecCccccCccccCC
Confidence            46789999886    456677776311 12346677889999999997 7888888899999999875543  2356789


Q ss_pred             CcEEEeCCCCceeE
Q 022278          266 GDVLWMAPFVPQWY  279 (300)
Q Consensus       266 GD~i~~~~~~~H~~  279 (300)
                      |++++.|+|..|..
T Consensus        93 GsYv~ePpGs~H~p  106 (153)
T 3bal_A           93 PSYGFESSGALHGK  106 (153)
T ss_dssp             SEEEEECTTCEESC
T ss_pred             CeEEEcCCCCcccc
Confidence            99999999999974

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.35  E-value=1.5e-06  Score=75.80  Aligned_cols=68  Identities=13%  Similarity=0.123  Sum_probs=53.4

Q ss_pred             CCCCCCceEEEEEEECEEEEEEcCCc-----EEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCcc
Q 022278          118 ALPPHDVERFIFVVQGSAMLTNASGV-----SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITE  187 (300)
Q Consensus       118 ~~~~h~gEEf~yVLeG~v~l~v~gg~-----~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p~  187 (300)
                      ..|.|+.+|++||++|++.+.+ +++     +..+++||.+++|+|++|++.+.+.- .+...+-|.+.+|+.|.
T Consensus        98 ~~H~H~~~Ei~yVleG~G~f~i-~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~-~~~airlF~~~~~W~~~  170 (191)
T 1vr3_A           98 EEHLHLDEEIRYILEGSGYFDV-RDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKN-YVKAMRLFVGEPVWTPY  170 (191)
T ss_dssp             SCEECSSCEEEEEEEEEEEEEE-ECTTSCEEEEEEETTEEEEECTTCCEEEEECTTC-CEEEEEEESSSCCCCCE
T ss_pred             cceECCcceEEEEEeceEEEEE-CCCCCeEEEEEECCCCEEEECcCCcCCcccCCCC-CEEEEEEECCCCCccCC
Confidence            5567888999999999999999 543     45999999999999999999974332 23344567777887654

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=98.31  E-value=9.1e-05  Score=68.02  Aligned_cols=196  Identities=16%  Similarity=0.196  Sum_probs=126.9

Q ss_pred             ceEEEEecCCCC---CcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCC--ceEE
Q 022278           90 TLGAYLITPAMG---SHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNF--AHSL  163 (300)
Q Consensus        90 ~~~~~L~sp~~g---~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~--~H~~  163 (300)
                      ..++.+.+...-   ..|.++--.+.|+...+.|+|. -|.+=||++|+++=.-.-|..-++++||.=+.-||.  -|+=
T Consensus        22 ~~v~R~~~~~~~~~~gpf~~ld~~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~DS~Gn~~~i~~GdvQwMtAG~GI~HsE  101 (277)
T 2p17_A           22 HRSGSVLEPGNWQEYDPFLLLMEDIFERGTFDVHPHRGIETVTYVISGELEHFDSKAGHSTLGPGDVQWMTAGRGVVHKE  101 (277)
T ss_dssp             EEEEEEECSSCHHHHTTEEEEEEEEECTTCCCCEEECSEEEEEEEEESCEEEEETTTEEEEECTTCEEEEECTTCEEEEE
T ss_pred             eEEeecCCcccccccCCEEEEecCCCCCCCCCCCCCCCcEEEEEEEEeEEEEeeCCCCceEECCCeEEEEeCCCCEEEEe
Confidence            344455543321   2344442266777777778665 577899999999987534778899999999999885  5766


Q ss_pred             ee--CCeEEEE--EEEeeccccCCCCcceeeccCCCCCCcccCCceeEEEEeeCC--------CCCcceEEEEEEecCCc
Q 022278          164 RA--EGSATLV--VFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQ--------AVPFDFNIHIMDFQPGD  231 (300)
Q Consensus       164 ~N--~~~a~vl--~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~p~--------~~~~~~~~~~~tl~PG~  231 (300)
                      .|  +++.+.+  |+.-+- ..++.+|..---..+++|....+|  ..+|.+...        ....+..+.-++|+||+
T Consensus       102 ~~~~~~~~~~lQlWvnLP~-~~k~~~P~y~~~~~~~ip~~~~~g--~~~rviaG~~~g~~~p~~~~~~~~~~~~~L~~g~  178 (277)
T 2p17_A          102 DPASGSTVHSLQLWVNLPS-AYKMTEPRYQNLRSKDMPVRKEEG--ATIRVFSGSSKGVKAPTKNIVPVTMVEMIVEPGT  178 (277)
T ss_dssp             EECTTCCEEEEEEEEECCG-GGTTCCCEEEEECGGGSCEEEETT--EEEEEEESEETTEECCCCCSSCEEEEEEEECTTC
T ss_pred             ecCCCCCEEEEEEEeeCCh-hhcCCCCcceeeccccCCeeeeCC--eEEEEEEcCccCCCCceecCCCCEEEEEEECCCC
Confidence            67  3455543  553111 124556776666667788655544  245555421        11236777788999999


Q ss_pred             ccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCC-C----CceeEEecCCccEEEEEE
Q 022278          232 FLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAP-F----VPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       232 ~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~-~----~~H~~~n~G~e~~~fi~~  292 (300)
                      .+.+.-...++..+|+++|+..  +||+...+.+||.+++.+ +    ..=.+.+.  ++.++|++
T Consensus       179 ~~~~~~~~~~~~~lyv~~G~v~--v~g~~~~l~~~d~~~~~~~~~~~~~~l~l~a~--~~a~~Ll~  240 (277)
T 2p17_A          179 TVVQDLPGHYNGFLYILEGSGV--FGADNIEGKAGQALFFSRHNRGEETELNVTAR--EKLRLLLY  240 (277)
T ss_dssp             EEEEEEETTCEEEEEEEESEEE--ETTTTEEEETTEEEEECCCCTTCEEEEEEEES--SSEEEEEE
T ss_pred             EEEeccCCCCEEEEEEEeCeEE--ECCCceEeCCCcEEEEcCCCCCccceEEEEeC--CCcEEEEE
Confidence            9765323345567899999865  466334699999999986 6    44456664  46777765

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=98.31  E-value=7e-06  Score=66.07  Aligned_cols=72  Identities=15%  Similarity=0.109  Sum_probs=56.7

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEE
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  175 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~  175 (300)
                      .+..-+-+..||.-.- ..+..+||+|||+|+++++..||+...+++||+++||+|..-.|+-.+++|=+++.
T Consensus        41 ~~~~GvWe~tPG~~~~-~~~~~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~~~P~G~~gtWev~e~vrK~~~~  112 (116)
T 3es4_A           41 GTIVAVWMAEPGIYNY-AGRDLEETFVVVEGEALYSQADADPVKIGPGSIVSIAKGVPSRLEILSSFRKLATV  112 (116)
T ss_dssp             CCEEEEEEECSEEEEE-CCCSEEEEEEEEECCEEEEETTCCCEEECTTEEEEECTTCCEEEEECSCEEEEEEE
T ss_pred             CEEEEEEecCCceeEC-eeCCCcEEEEEEEeEEEEEeCCCeEEEECCCCEEEECCCCeEEEEEeEEEeEEEEE
Confidence            4445566888885432 23455699999999999998668889999999999999999999987777655553

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.31  E-value=2.4e-06  Score=70.18  Aligned_cols=67  Identities=12%  Similarity=0.045  Sum_probs=54.6

Q ss_pred             EEEEcCCCcC-----CCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-C--CeEEEEEEE
Q 022278          108 LANMQENARS-----ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-E--GSATLVVFE  175 (300)
Q Consensus       108 lv~l~PG~~~-----~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~--~~a~vl~v~  175 (300)
                      .-...|+...     .++.|+.-+++||++|++++.+ +++++.+++||.+++||+..|.+.+ .  ++.+.+|+.
T Consensus        17 ~~~~~~~~~~~~~~~~p~~h~~~~i~~v~~G~~~~~i-~~~~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i~   91 (164)
T 2arc_A           17 LTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKN-QGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVY   91 (164)
T ss_dssp             EEEEETTSTTCSCEEETTCCSSEEEEEEEEECEEEEE-TTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEE
T ss_pred             ceeeccCCchhhhhccccCCCceEEEEEEEeEEEEEE-CCEEEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEEE
Confidence            3344565443     2346888899999999999999 9999999999999999999999997 3  567877773

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=98.26  E-value=1.3e-06  Score=73.69  Aligned_cols=103  Identities=13%  Similarity=0.070  Sum_probs=75.3

Q ss_pred             eeeEeCCCCeeeccCCC---CCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cE
Q 022278           70 DHALITPESHVLSPLPE---WTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VS  144 (300)
Q Consensus        70 ~~av~~~e~~~~~~~p~---~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg--~~  144 (300)
                      ..+++.+++..+...|.   ..+.....|--.. .+.-...++.++||+..+.|.|.+.|.+|||+|+....- ++  ..
T Consensus        10 ~~~~v~~d~~~W~p~P~~l~~~Gv~~k~L~~~~-e~g~~t~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~~-Gd~~~~   87 (153)
T 3bal_A           10 AEEYVKISDNNYVPFPEAFSDGGITWQLLHSSP-ETSSWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVRG-GEQEGG   87 (153)
T ss_dssp             CCEEEECCGGGCEECCGGGEESCCEEEEEEEET-TTTEEEEEEEECTTEEECCEEESSCEEEEEEESEEEETT-CGGGTS
T ss_pred             cceEEccccCceecCCCccCCCCeEEEEEEECC-ccceEEEEEEeCCCCCccCccCCCCEEEEEEEEEEEecC-ccccCc
Confidence            34677888877776651   1345566653322 244556788999999999999999999999999998653 44  34


Q ss_pred             EEeccCcEEEeCCCCceEEe-eCCeEEEEEE
Q 022278          145 SKLMVDSYTYLPPNFAHSLR-AEGSATLVVF  174 (300)
Q Consensus       145 ~~L~~Gds~yfpa~~~H~~~-N~~~a~vl~v  174 (300)
                      ..+++|+|+|-|+|..|... .++++.++++
T Consensus        88 ~~~~aGsYv~ePpGs~H~p~~~~~~~~~~~~  118 (153)
T 3bal_A           88 STAYAPSYGFESSGALHGKTFFPVESQFYMT  118 (153)
T ss_dssp             EEEESSEEEEECTTCEESCCEESSCEEEEEE
T ss_pred             cccCCCeEEEcCCCCcccceeCCCCeEEEEE
Confidence            78999999999999999844 4555666555

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=98.26  E-value=0.00013  Score=66.22  Aligned_cols=169  Identities=12%  Similarity=0.055  Sum_probs=111.7

Q ss_pred             EEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC--CceEEee---CCeEEE--EEEEeecc
Q 022278          108 LANMQENARSALPPHDV-ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA---EGSATL--VVFERRYA  179 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~--~~H~~~N---~~~a~v--l~v~~~y~  179 (300)
                      ..++.||...+.|+|.+ |.+-||++|+++-.-.-|...++++||.-+..||  +.|+=.|   +++.++  |||.-  .
T Consensus        68 ~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlWi~l--~  145 (256)
T 2vec_A           68 QEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDA--C  145 (256)
T ss_dssp             EEEECTTCEEEEECCSSEEEEEEEEESEEEEEETTSCEEEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEEEEC--C
T ss_pred             ccccCCCCccCCcCCCCcEEEEEEEeeEEEEEeCCCCEEEECCCeEEEEECCCCeEEEEEECCCCceEEEEEEEEeC--C
Confidence            56788988778887766 5588999999998863388899999999999776  6899887   245665  47751  1


Q ss_pred             ccCCCCcceeeccCCCCCCcccCCceeEEEEee-CCC------CCcceEEEEEEecCCcccCcceeeccceEEEEEEeeE
Q 022278          180 SLENHITEQIVGSTDKQPLLETPGEVFQLRKLL-PQA------VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQG  252 (300)
Q Consensus       180 ~~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~-p~~------~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G  252 (300)
                      | ....|..---   ++|.    + .  .+.+. +..      ...+..+.-.+|+||+.+.+.-...+ -.+|+++|+.
T Consensus       146 p-~~~~P~yq~~---~~p~----~-~--~~lIag~~G~~~p~~~~~~~~~~~~~L~~g~~~~~~~~~~~-~~l~v~~G~v  213 (256)
T 2vec_A          146 P-QRENPLIQKL---ALNM----G-K--QQLIASPEGAMGSLQLRQQVWLHHIVLDKGESANFQLHGPR-AYLQSIHGKF  213 (256)
T ss_dssp             T-TSCCCSEEEE---ECCC----S-S--EEEEEESSCGGGCEECSSSCEEEEEEECTTCEEEEECSSSE-EEEEEEESCE
T ss_pred             h-hcCCCCceEE---cCCC----C-C--EEEEEeCCCCCCceEccCCcEEEEEEECCCCEEEEecCCCe-EEEEEEECEE
Confidence            2 1112322211   1231    2 2  23332 211      12356677789999998754221223 5689999988


Q ss_pred             EEEeC-CEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          253 IYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       253 ~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      .+.-+ ++...+.+||.+.+.++..=.+.+  .++.++|++
T Consensus       214 ~v~g~~~~~~~l~~gd~~~l~~~~~l~l~a--~~~a~~LL~  252 (256)
T 2vec_A          214 HALTHHEEKAALTCGDGAFIRDEANITLVA--DSPLRALLI  252 (256)
T ss_dssp             EEEETTEEEEEECTTCEEEEESCSEEEEEE--SSSEEEEEE
T ss_pred             EECCccccceEECCCCEEEECCCCeEEEEe--CCCCEEEEE
Confidence            77532 245679999999998776656666  478888876

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=98.23  E-value=4.9e-05  Score=70.26  Aligned_cols=186  Identities=11%  Similarity=0.057  Sum_probs=122.7

Q ss_pred             EEEE-EEEEcCCCcCCCCCCC-ceEEEEEE-ECEEEEEEcCCcEEEeccCcEEEeCCCC--ceEEee--CCeEEEE--EE
Q 022278          104 FVMY-LANMQENARSALPPHD-VERFIFVV-QGSAMLTNASGVSSKLMVDSYTYLPPNF--AHSLRA--EGSATLV--VF  174 (300)
Q Consensus       104 f~~~-lv~l~PG~~~~~~~h~-gEEf~yVL-eG~v~l~v~gg~~~~L~~Gds~yfpa~~--~H~~~N--~~~a~vl--~v  174 (300)
                      |.++ ...+.|+...+.|+|. -|.+=||+ +|+++=.-.-|..-++++||.=+.-||.  -|+=.|  +++.+.+  |+
T Consensus        39 f~~ld~~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~DS~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlWv  118 (290)
T 1j1l_A           39 FLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWV  118 (290)
T ss_dssp             EEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSCEEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEE
T ss_pred             EEEEEccccCCCCCCCCCCCCCeEEEEEECcceEEEEeeCCCCceEECCCcEEEEeCCCCEEEEeEcCCCCCEEEEEEEe
Confidence            4443 4467787767777665 47788999 9999987534778899999999998885  476666  3455543  55


Q ss_pred             EeeccccCCCCcceeeccCCCCCCcccCCceeEEEEeeCC--------CCCcceEEEEEEecCCcccCcceeeccceEEE
Q 022278          175 ERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQ--------AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLL  246 (300)
Q Consensus       175 ~~~y~~~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~p~--------~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~  246 (300)
                      .=+= ..++.+|..---.-+++|....+|  +.++.+..+        ....+..+--++|+||+.+-+.-...++..+|
T Consensus       119 nLP~-~~k~~~P~y~~~~~~~ip~~~~~g--~~v~viaG~~~g~~~p~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~ly  195 (290)
T 1j1l_A          119 NLRS-SEKMVEPQYQELKSEEIPKPSKDG--VTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIY  195 (290)
T ss_dssp             ECCG-GGTTSCCEEEEECGGGSCCCEETT--EEEEEEESEETTEECCCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEE
T ss_pred             cCCh-hhcCCCCcceecccccCCcEeECC--EEEEEEcCCcccCCCceeccCCcEEEEEEECCCCEEEeecCCCCEEEEE
Confidence            2111 124455665555555677655443  355555432        11235667778999999874322223566789


Q ss_pred             EEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          247 LLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       247 iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +++|+..+.-+....++.++..++..+|..=.+.|.++++.++|++
T Consensus       196 v~~G~v~v~g~~~~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LLl  241 (290)
T 1j1l_A          196 TISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLI  241 (290)
T ss_dssp             EEESCEEESCTTSCEEECTTEEEEECSCSEEEEECCSSSCEEEEEE
T ss_pred             EEeCeEEECCcccceeccCceEEEecCCCEEEEEEcCCCCcEEEEE
Confidence            9999987632222256778999999888777777766788888876

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.17  E-value=5.2e-06  Score=71.40  Aligned_cols=67  Identities=18%  Similarity=0.143  Sum_probs=54.4

Q ss_pred             cEEEEEEEEcCCCcCCCCCCC-------ceEEEEEEECEEEEEEcCCcE---------------------EEeccCcEEE
Q 022278          103 HFVMYLANMQENARSALPPHD-------VERFIFVVQGSAMLTNASGVS---------------------SKLMVDSYTY  154 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~-------gEEf~yVLeG~v~l~v~gg~~---------------------~~L~~Gds~y  154 (300)
                      ++.--++.+.||+..+.|.|.       -+|-++|+.|++++++ +|+.                     ..|++||++.
T Consensus        52 ~Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~-~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvt  130 (175)
T 2y0o_A           52 RYCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV-EGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYT  130 (175)
T ss_dssp             SEEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE-SSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEE
T ss_pred             CceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE-CCccccCcceeccCCceeeecCCcEEEECCCCEEE
Confidence            477788899999988777444       4555559999999999 7755                     4999999999


Q ss_pred             eCCCCceEEee-CCeEE
Q 022278          155 LPPNFAHSLRA-EGSAT  170 (300)
Q Consensus       155 fpa~~~H~~~N-~~~a~  170 (300)
                      +|+++.|++.| .+.+.
T Consensus       131 Ippg~~H~f~ageegvl  147 (175)
T 2y0o_A          131 IPPNTKHWFQAGEEGAV  147 (175)
T ss_dssp             ECTTCCEEEEEEEEEEE
T ss_pred             ECCCCcEEEEeCCCCEE
Confidence            99999999998 44433

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=98.14  E-value=1.8e-05  Score=67.80  Aligned_cols=76  Identities=11%  Similarity=0.144  Sum_probs=61.4

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEE---cCC-----cEEEeccCcEEEeCCCCceEEee--CCeEE
Q 022278          102 SHFVMYLANMQENARSALPPHDV-ERFIFVVQGSAMLTN---ASG-----VSSKLMVDSYTYLPPNFAHSLRA--EGSAT  170 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v---~gg-----~~~~L~~Gds~yfpa~~~H~~~N--~~~a~  170 (300)
                      .+|+.+++...||+.++.|.|++ ..+++||+|+++.++   .++     ++..+.+||.+++|++..|+++|  +++|.
T Consensus        67 ~~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aV  146 (171)
T 3eqe_A           67 NELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTSERMV  146 (171)
T ss_dssp             SSCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSSSCEE
T ss_pred             CCeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCCCCEE
Confidence            58899999999999999998886 678889999999864   234     47889999999999999999999  44544


Q ss_pred             EEEEEeeccc
Q 022278          171 LVVFERRYAS  180 (300)
Q Consensus       171 vl~v~~~y~~  180 (300)
                      -|   +.|.|
T Consensus       147 Sl---HvY~p  153 (171)
T 3eqe_A          147 SL---HVYSP  153 (171)
T ss_dssp             EE---EEEES
T ss_pred             EE---EEeCC
Confidence            33   34544

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=98.14  E-value=1.2e-05  Score=70.93  Aligned_cols=81  Identities=14%  Similarity=0.180  Sum_probs=65.4

Q ss_pred             EEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE----c------CCcEEEeccCcEEEeCC--CC
Q 022278           92 GAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN----A------SGVSSKLMVDSYTYLPP--NF  159 (300)
Q Consensus        92 ~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v----~------gg~~~~L~~Gds~yfpa--~~  159 (300)
                      .+.++....+.+|+.+++...||..++.|.|+...+++||+|+++.++    .      .+++.+|.+|+.++|++  +.
T Consensus        67 ~r~lL~~dp~~~~~v~~l~w~PGq~spiHdH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~  146 (208)
T 2gm6_A           67 QQMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGD  146 (208)
T ss_dssp             EEEEEEECTTSSCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBC
T ss_pred             eEEEeecCCCCCEEEEEEEeCCCcccCcccCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCC
Confidence            344554455678999999999999999998988999999999997754    1      23578999999999999  89


Q ss_pred             ceEEee---CCeEEEE
Q 022278          160 AHSLRA---EGSATLV  172 (300)
Q Consensus       160 ~H~~~N---~~~a~vl  172 (300)
                      -|+++|   +++|..|
T Consensus       147 iH~V~N~~~~~~avsL  162 (208)
T 2gm6_A          147 IHRVHNAYDDRVSISI  162 (208)
T ss_dssp             CEEEEESCSSSCEEEE
T ss_pred             eEEeccCCCCCcEEEE
Confidence            999998   3445444

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=98.13  E-value=1e-05  Score=73.58  Aligned_cols=79  Identities=18%  Similarity=0.161  Sum_probs=67.4

Q ss_pred             eCCCCC--cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEe--CCCCceeEEecCC-c
Q 022278          212 LPQAVP--FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWM--APFVPQWYAALGK-T  285 (300)
Q Consensus       212 ~p~~~~--~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~--~~~~~H~~~n~G~-e  285 (300)
                      .|..+.  ..+.++.+++.||.-+|.|-|..+|-..|||+|+...++. |....++|||+-||  +.|+.|+-.|..+ +
T Consensus        54 dP~~~~fg~l~vln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~  133 (256)
T 2vec_A           54 DPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDK  133 (256)
T ss_dssp             BTTBCSCCCEEEEEEEEECTTCEEEEECCSSEEEEEEEEESEEEEEETTSCEEEEETTEEEEECCCTTCCEEEEECCSSS
T ss_pred             CHhHhcCCceEeccccccCCCCccCCcCCCCcEEEEEEEeeEEEEEeCCCCEEEECCCeEEEEECCCCeEEEEEECCCCc
Confidence            354444  3567899999999999987777888889999999999999 99999999999999  7779999999765 7


Q ss_pred             cEEEE
Q 022278          286 RTRYL  290 (300)
Q Consensus       286 ~~~fi  290 (300)
                      ++.+|
T Consensus       134 ~l~~l  138 (256)
T 2vec_A          134 PLTRM  138 (256)
T ss_dssp             CEEEE
T ss_pred             eEEEE
Confidence            88876

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=98.05  E-value=3.4e-05  Score=69.40  Aligned_cols=72  Identities=13%  Similarity=0.213  Sum_probs=56.9

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  174 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v  174 (300)
                      ..+..-+.+..||.... ..++.+||+|||+|+++++..+|+..++++||+++||+|..-.|+-.+.+|=+++
T Consensus       165 g~~~~GiW~~tpG~~~~-~~~~~~E~~~ILeG~v~lt~~~G~~~~~~aGD~~~~P~G~~~tWev~e~vrK~Yv  236 (238)
T 3myx_A          165 STLRIGVWDSTPYERIS-RPHKIHELMNLIEGRVVLSLENGSSLTVNTGDTVFVAQGAPCKWTSTGYVRKFYA  236 (238)
T ss_dssp             SSCEEEEEEECCEEBCC-EECSSCEEEEEEECCEEEEETTSCEEEECTTCEEEECTTCEEEEEESSCEEEEEE
T ss_pred             CCEEEeEEEeCCCEEEC-CcCCCCEEEEEEEeEEEEEeCCCCEEEECCCCEEEECCCCEEEEEECccEEEEEE
Confidence            35666677777875321 1356789999999999999867889999999999999999999998666654443

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=97.95  E-value=3.5e-05  Score=69.48  Aligned_cols=72  Identities=14%  Similarity=-0.044  Sum_probs=64.1

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEe--CCCCceeEEecCC-ccEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWM--APFVPQWYAALGK-TRTRYL  290 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~--~~~~~H~~~n~G~-e~~~fi  290 (300)
                      -+.++-.++.||.-+|.|-|...|-..|+|+|+...++. |....+++||+-||  +.|+.|+=.|..+ +++.+|
T Consensus        40 l~v~n~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~l  115 (242)
T 1tq5_A           40 LRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLY  115 (242)
T ss_dssp             EEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEEESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCCEEEE
T ss_pred             eEeeccceeCCCCcCCCcCCCCcEEEEEEEEeEEEEEeCCCCcEEECCCcEEEEECCCCcEEEEEcCCCCCeEEEE
Confidence            467888999999999988777888899999999999999 99999999999999  7779999999764 788776

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=97.95  E-value=2e-06  Score=74.34  Aligned_cols=66  Identities=12%  Similarity=0.129  Sum_probs=48.2

Q ss_pred             CCCCCCceEEEEEEECEEEEEEc-CCcE--EEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCC
Q 022278          118 ALPPHDVERFIFVVQGSAMLTNA-SGVS--SKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENH  184 (300)
Q Consensus       118 ~~~~h~gEEf~yVLeG~v~l~v~-gg~~--~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~  184 (300)
                      ..|.|+.+|+.||++|++.+.+. +|+.  ..+++||.+++|+|++|++.+.+.. .+...+-|.+.+|+
T Consensus        94 ~~H~H~~~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~~-~~~~ir~F~~~~~w  162 (179)
T 1zrr_A           94 NEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEP-NFTAIRIFDNPEGW  162 (179)
T ss_dssp             SCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCS-SCEEEEEECCGGGE
T ss_pred             cceECChheEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCCCeEeeecCCCc-eEEEEEeccCCCCc
Confidence            45778889999999999988762 5676  4599999999999999999873331 22223345554553

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=97.89  E-value=7.8e-05  Score=65.68  Aligned_cols=85  Identities=15%  Similarity=0.087  Sum_probs=66.2

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe-----C------CEEEEccCCcEEEeCC--
Q 022278          207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-----G------DSWYPVQAGDVLWMAP--  273 (300)
Q Consensus       207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~-----~------g~~~~v~~GD~i~~~~--  273 (300)
                      ..|.++-.+....+.+-.+...||..+|.| .|...-.++||+|+.....     +      ++...+++||++++++  
T Consensus        66 y~r~lL~~dp~~~~~v~~l~w~PGq~spiH-dH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~  144 (208)
T 2gm6_A           66 YQQMLLHCDSAERFSIVSFVWGPGQRTPIH-DHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTV  144 (208)
T ss_dssp             CEEEEEEECTTSSCEEEEEEECTTCBCCSB-CCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTT
T ss_pred             eeEEEeecCCCCCEEEEEEEeCCCcccCcc-cCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCC
Confidence            456666555555677779999999999985 5555567899999997653     2      3578899999999999  


Q ss_pred             CCceeEEec-CCccEEEE-EE
Q 022278          274 FVPQWYAAL-GKTRTRYL-LY  292 (300)
Q Consensus       274 ~~~H~~~n~-G~e~~~fi-~~  292 (300)
                      |..|.+.|. ++++..-| +|
T Consensus       145 g~iH~V~N~~~~~~avsLHvY  165 (208)
T 2gm6_A          145 GDIHRVHNAYDDRVSISIHVY  165 (208)
T ss_dssp             BCCEEEEESCSSSCEEEEEEE
T ss_pred             CCeEEeccCCCCCcEEEEEEE
Confidence            999999999 78876655 44

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.87  E-value=0.00017  Score=58.00  Aligned_cols=93  Identities=15%  Similarity=0.169  Sum_probs=62.2

Q ss_pred             eccC-CCCCCcccCC-----ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEE
Q 022278          190 VGST-DKQPLLETPG-----EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYP  262 (300)
Q Consensus       190 ~~~~-~d~~~~~~~g-----~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~  262 (300)
                      +-|+ +|+.+.+...     +....|.+...+....+.+-+-..+||..- . +.+.+.|..|||+|+++++.+ |+.++
T Consensus         6 ~~~~~~~~~~~p~~pa~~r~~~~~~~~~~~~~~~g~~~~GvWe~tPG~~~-~-~~~~~~E~~~iLeG~~~lt~ddG~~~~   83 (116)
T 3es4_A            6 IFNISDDVDLVPAMPAEGRDGGSYRRQIWQDDVENGTIVAVWMAEPGIYN-Y-AGRDLEETFVVVEGEALYSQADADPVK   83 (116)
T ss_dssp             EEETTCCCSCEECCCCTTCSSCEEEEEEEECSSSSCCEEEEEEECSEEEE-E-CCCSEEEEEEEEECCEEEEETTCCCEE
T ss_pred             eEccccccCcCCCCCcceeecCcceEEEEeeCCCCCEEEEEEecCCceeE-C-eeCCCcEEEEEEEeEEEEEeCCCeEEE
Confidence            4466 7776666432     233444444322222344456688899753 2 234455789999999999875 67899


Q ss_pred             ccCCcEEEeCCCCceeEEecCC
Q 022278          263 VQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       263 v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      ++|||.+++|+|...-..-...
T Consensus        84 l~aGD~~~~P~G~~gtWev~e~  105 (116)
T 3es4_A           84 IGPGSIVSIAKGVPSRLEILSS  105 (116)
T ss_dssp             ECTTEEEEECTTCCEEEEECSC
T ss_pred             ECCCCEEEECCCCeEEEEEeEE
Confidence            9999999999999876665433

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=97.85  E-value=3e-05  Score=69.62  Aligned_cols=70  Identities=7%  Similarity=0.078  Sum_probs=57.0

Q ss_pred             cceEEEEEEecCCcccCc-ceeeccceEEEEEEeeEEEEeCCE---EEEccCCcEEEeCCCCceeEEec--CCccEE
Q 022278          218 FDFNIHIMDFQPGDFLNV-KEVHYNQHGLLLLEGQGIYRLGDS---WYPVQAGDVLWMAPFVPQWYAAL--GKTRTR  288 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~-~~~H~~eh~~~iL~G~G~~~~~g~---~~~v~~GD~i~~~~~~~H~~~n~--G~e~~~  288 (300)
                      .+|.+++..++......+ .|.|..-+.+||++|+|. .+|++   .+++++||+++++||..|.+...  ++++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~G~~~-~i~~~~~~~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~   80 (276)
T 3gbg_A            5 KSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAK-LIDKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENIN   80 (276)
T ss_dssp             TTEEEEEEEECTTCEEEEEEEECSSCEEEEESSSCEE-EEETTTTEEEEECTTEEEEECTTCEEEEEEEECCSSCEE
T ss_pred             hhhhhhhhhhhcccchhccHhhhcceEEEEEecCceE-EECCccceeEEEcCCCEEEEcCCCceeeccccCCCcceE
Confidence            468888888888877544 244555579999999999 99999   99999999999999999999877  334443

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=97.85  E-value=9.6e-05  Score=63.23  Aligned_cols=81  Identities=19%  Similarity=0.223  Sum_probs=63.0

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccce-EEEEEEeeEEEEe----CC-----EEEEccCCcEEEeCCCCc
Q 022278          207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQH-GLLLLEGQGIYRL----GD-----SWYPVQAGDVLWMAPFVP  276 (300)
Q Consensus       207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh-~~~iL~G~G~~~~----~g-----~~~~v~~GD~i~~~~~~~  276 (300)
                      ..|.++-.+.  .+.+-.++..||..+|. |.|...+ .+.||+|+...+.    +|     ....+++||+.+.+++..
T Consensus        58 YtR~ll~~~~--~~~v~~l~W~PGq~S~i-HdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~i  134 (171)
T 3eqe_A           58 YGRNAIYRNN--ELEIIVINIPPNKETTV-HDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLI  134 (171)
T ss_dssp             SEEEEEEECS--SCEEEEEEECTTCBCCE-ECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCE
T ss_pred             EEEEEEecCC--CeEEEEEEECCCCCccc-ccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCE
Confidence            3455554333  45666999999999997 6777554 5669999998653    44     578899999999999999


Q ss_pred             eeEEecCCccEEEE
Q 022278          277 QWYAALGKTRTRYL  290 (300)
Q Consensus       277 H~~~n~G~e~~~fi  290 (300)
                      |.+.|.|+++.+=|
T Consensus       135 H~V~N~~~~~aVSl  148 (171)
T 3eqe_A          135 HKMSNPTSERMVSL  148 (171)
T ss_dssp             EEEECCSSSCEEEE
T ss_pred             EEEECCCCCCEEEE
Confidence            99999999877654

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=97.84  E-value=4.4e-05  Score=65.29  Aligned_cols=56  Identities=14%  Similarity=0.096  Sum_probs=48.5

Q ss_pred             ecCCcccCcceeeccceEEEEEEeeEEEEeCC----EEEEccCCcEEEeCCCCceeEEecC
Q 022278          227 FQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD----SWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       227 l~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g----~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      -.|++...+| +|..+|.+|+|+|...+.+.+    +...+++||+..+|+|++|+-.+.+
T Consensus        42 ~Gpn~r~d~H-~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           42 GGPNHRTDYH-DDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             CSCBCCCCEE-ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             cCCCcCccCc-CCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCCcCccccC
Confidence            4577779885 888889999999999998754    5899999999999999999987765

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=97.81  E-value=0.00017  Score=67.43  Aligned_cols=128  Identities=14%  Similarity=0.173  Sum_probs=74.0

Q ss_pred             cEEEeccCcEEEeCCCCceEEeeCC-eEEEEE----EEeeccc-cCCCC--ccee-----ec--cCCCCCCcccC----C
Q 022278          143 VSSKLMVDSYTYLPPNFAHSLRAEG-SATLVV----FERRYAS-LENHI--TEQI-----VG--STDKQPLLETP----G  203 (300)
Q Consensus       143 ~~~~L~~Gds~yfpa~~~H~~~N~~-~a~vl~----v~~~y~~-~~g~~--p~~~-----~~--~~~d~~~~~~~----g  203 (300)
                      +...|++||.+|+|||+.|.+-+.. -+.+..    +-|.|-- .-|..  |+.+     +.  ++...+....+    .
T Consensus       158 n~v~l~pGd~~~ipaGt~HA~~~G~~~~Eiq~~SD~t~R~yDy~R~g~~g~pr~lhv~~~~~~l~~~~~~~~~~~~~~~~  237 (319)
T 1qwr_A          158 RRIKIKPGDFYYVPSGTLHALCKGALVLETQQNSDATYRVYDYDRLDSNGSPRELHFAKAVNAATVPHVDGYIDESTESR  237 (319)
T ss_dssp             EEEECCTTCEEEECTTCCEEECSSEEEEEEEESCCCCEEEECTTCBCTTSCBCCCCHHHHHHHSCSSCCCCCCCCEEEEE
T ss_pred             eEEEcCCCCEEEcCCCCceEecCCCeEEEEEeCCccEEEcccccccCCCCCcccCCHHHHHhhccccCCCcccccceeec
Confidence            5789999999999999999987422 222211    1122210 00111  2211     11  11111100000    0


Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCc
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP  276 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~  276 (300)
                      ++.....+.|   ..+|.+.++++.++..+   ....-..++.+++|+|.+..+|+.+++++||.+|+|+++.
T Consensus       238 ~~~~~~~~~~---~~~F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~l~~~~~~~~l~~G~~~~vpa~~~  304 (319)
T 1qwr_A          238 KGITIKTFVQ---GEYFSVYKWDINGEAEM---AQDESFLICSVIEGSGLLKYEDKTCPLKKGDHFILPAQMP  304 (319)
T ss_dssp             TTEEEEEEEE---CSSCEEEEEEEEEEEEE---CCCSSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCC
T ss_pred             CCceEEEeCC---CCEEEEEEEEECCceEE---ccCCccEEEEEEcCeEEEEECCEEEEEcCCcEEEEeCCCc
Confidence            1112223332   23677778888765432   2233447899999999999999999999999999999874

>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A

Probab=97.72  E-value=2.2e-05  Score=73.16  Aligned_cols=140  Identities=16%  Similarity=0.055  Sum_probs=90.0

Q ss_pred             CCCccCCcccccccCCCCcceeeecCCCCChhh------hhcccCCcceeeeee----eeEe----CCCCeeeccCCCCC
Q 022278           23 DGGFCSAPSILDRETSSKPMYWKVTNPTLSPSH------LQDLPGFTRSVYKRD----HALI----TPESHVLSPLPEWT   88 (300)
Q Consensus        23 ~~~~~~~~~~a~r~~lsk~~~Sqver~~~sps~------I~~~lg~trs~f~~~----~av~----~~e~~~~~~~p~~~   88 (300)
                      .-.-||++++|++||.+..=||..|||+.+|--      ++++|+++--+|-+.    ..|.    ++++...+.-+-+.
T Consensus       240 ~ReglTQ~~LAe~TGIPq~hISeMenGKr~~IGkdeaR~LA~ALnvDYRvLLP~~~~~d~vgKT~~t~e~s~~S~r~f~s  319 (443)
T 3g7d_A          240 ARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYRVLLPADDQHDGVGKTWTTIEDSRRSRRTFGT  319 (443)
T ss_dssp             HHTTCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHHTCCGGGGSCCCCC--CCTTTCBCHHHHHHTCEEETT
T ss_pred             HhcCCCHHHHHHHhCCCHHHHHHHhcCCcCCccHHHHHHHHHHhCCCchhccCcccccccccccccchhhcccccCccee
Confidence            467799999999999999999999999997733      999999987777652    1221    12222111122221


Q ss_pred             cceEEEEecCCCC---CcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEc-CCc--EEEeccCcEEEeCCCCce
Q 022278           89 NTLGAYLITPAMG---SHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNA-SGV--SSKLMVDSYTYLPPNFAH  161 (300)
Q Consensus        89 ~~~~~~L~sp~~g---~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~-gg~--~~~L~~Gds~yfpa~~~H  161 (300)
                          +-+++-+.-   .++.-+.+++..++ .... ..-+|.-+.|.+|++++.-. .+.  +..|.++||+|+.|-++|
T Consensus       320 ----Ye~AS~A~~phlPdl~g~~l~Vd~~d-~~~DL~d~ge~hY~v~~G~lTL~W~~~dGt~~a~L~PDgSAwv~PFV~H  394 (443)
T 3g7d_A          320 ----YEAASMASAAHLPDLVGSFLRVDADG-RGADLIDHAENHYVVTEGRLTLEWDGPDGPASVELEPDGSAWTGPFVRH  394 (443)
T ss_dssp             ----EEEEECCCCTTCTTCEEEEEEEC-------CBCCSSEEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCE
T ss_pred             ----eehhhhhccccCCCceeEEEEecCCC-cchhhhhcccceEEEecCceEEEecCCCCccceEECCCCceeecccccc
Confidence                233333322   23344555554322 2222 33457777799999999762 233  358999999999999999


Q ss_pred             EEeeCC
Q 022278          162 SLRAEG  167 (300)
Q Consensus       162 ~~~N~~  167 (300)
                      .|+.+.
T Consensus       395 ~w~G~G  400 (443)
T 3g7d_A          395 RWHGTG  400 (443)
T ss_dssp             EEESSE
T ss_pred             cccCCc
Confidence            999533

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=97.71  E-value=0.00021  Score=63.12  Aligned_cols=73  Identities=18%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             EEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE----cCC------cEEEeccCcEEEeCCC--Cc
Q 022278           93 AYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN----ASG------VSSKLMVDSYTYLPPN--FA  160 (300)
Q Consensus        93 ~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v----~gg------~~~~L~~Gds~yfpa~--~~  160 (300)
                      +.++....+..|+++++...||..++.|.|+..-++.||+|+++-+.    .+|      ++..|.+|+.++|.++  .-
T Consensus        62 r~lL~~dp~~~f~v~~l~W~PGq~spiHDH~swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~I  141 (211)
T 3uss_A           62 QYLLHVDSRQRFSVVSFVWGPGQITPVHDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDV  141 (211)
T ss_dssp             EEEEEECTTSSCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCC
T ss_pred             EEEEecCCCCCEEEEEEEECCCCcCCCCCCCeeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCE
Confidence            35665566678999999999999999998889999999999997754    233      3588999999999998  89


Q ss_pred             eEEee
Q 022278          161 HSLRA  165 (300)
Q Consensus       161 H~~~N  165 (300)
                      |+++|
T Consensus       142 H~V~N  146 (211)
T 3uss_A          142 HQVSN  146 (211)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            99998

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=97.70  E-value=0.0001  Score=67.45  Aligned_cols=75  Identities=12%  Similarity=0.232  Sum_probs=57.5

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEee
Q 022278          101 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  177 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~  177 (300)
                      |+.++.=++-+.+|.+... ....|..+++|||+..+++ +|+++.|++||++.+||+..|.|.-.+.+++|-|...
T Consensus       204 g~~~eteV~l~G~Ges~~~-~~~~d~wiWqLEGss~Vt~-~~q~~~L~~~DsLLIpa~~~y~~~r~~gsv~L~I~~~  278 (286)
T 2qnk_A          204 GDTYETQVIAYGQGSSEGL-RQNVDVWLWQLEGSSVVTM-GGRRLSLAPDDSLLVLAGTSYAWERTQGSVALSVTQD  278 (286)
T ss_dssp             CTTSSEEEEEECSEEEEEC-CCSSCEEEEEEESCEEEEE-TTEEEEECTTEEEEECTTCCEEEEECTTCEEEEEEEC
T ss_pred             cCCCceEEEEEcCCccccc-cCcCcEEEEEEcCceEEEE-CCeEEeccCCCEEEecCCCeEEEEecCCeEEEEEEEC
Confidence            3343333333666644322 2333999999999999999 9999999999999999999999998777888877654

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=97.70  E-value=0.00037  Score=67.04  Aligned_cols=126  Identities=15%  Similarity=0.153  Sum_probs=73.7

Q ss_pred             cEEEeccCcEEEeCCCCceEEeeCCeEEEEEE-EeeccccCCCCccee-----ec--cCCCCC--CcccCC--ceeEEEE
Q 022278          143 VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF-ERRYASLENHITEQI-----VG--STDKQP--LLETPG--EVFQLRK  210 (300)
Q Consensus       143 ~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v-~~~y~~~~g~~p~~~-----~~--~~~d~~--~~~~~g--~~~~~~~  210 (300)
                      ....|++||.+|+|||++|.+-...-+.+..- .-.|+  .|..|+.+     +.  ++...+  ...+..  .......
T Consensus       240 n~v~l~pGd~~fipAG~~HAy~~G~~~Eima~SDnv~R--~gltpk~~dv~~ll~vl~~~~~~~~~~~~~~~~~~~~~~~  317 (394)
T 2wfp_A          240 NVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLR--AGLTPKYIDIPELVANVKFEPKPAGELLTAPVKSGAELDF  317 (394)
T ss_dssp             EEEEECTTCEEEECTTCCEEEEEEEEEEEECSSCBCEE--CSSCSSCCCHHHHHHTCCCCBCCGGGSSCCCEEETTEEEC
T ss_pred             eEEECCCCCEEEcCCCCceEcCCCcEEEEeccCCcEEE--cCCcCCccCHHHHhhhccccCCCccccccccccCCceEEE
Confidence            35789999999999999999874112222210 00122  34444421     00  111111  000110  0101111


Q ss_pred             eeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCc
Q 022278          211 LLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP  276 (300)
Q Consensus       211 l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~  276 (300)
                      +.|   ..+|.+.++++.+|.. .  -.+.-..++.+++|+|.+..+++..++++||.+|+++++.
T Consensus       318 ~~~---~~~F~v~~~~l~~~~~-~--~~~~~~~il~v~~G~~~l~~~~~~~~l~~G~~~fvpa~~~  377 (394)
T 2wfp_A          318 PIP---VDDFAFSLHDLALQET-S--IGQHSAAILFCVEGEAVLRKDEQRLVLKPGESAFIGADES  377 (394)
T ss_dssp             CCS---SSSCEEEEEECCSSCE-E--ECCSSCEEEEEEEEEEEEEETTEEEEECTTCEEEECGGGC
T ss_pred             eCC---CCEEEEEEEEEcCCeE-E--ecCCCcEEEEEEeceEEEEECCeEEEEccCcEEEEeCCCc
Confidence            222   2467888888876532 1  2333447999999999999999889999999999999853

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=97.60  E-value=9e-05  Score=61.24  Aligned_cols=56  Identities=9%  Similarity=0.107  Sum_probs=50.3

Q ss_pred             CCCceEEEEEEECEEEEEEcC--------CcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEee
Q 022278          121 PHDVERFIFVVQGSAMLTNAS--------GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  177 (300)
Q Consensus       121 ~h~gEEf~yVLeG~v~l~v~g--------g~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~  177 (300)
                      +++.+|+++||+|++++.+ .        +....|++|+.+.+|.|+.|+-...++++++.|..+
T Consensus        47 H~~tDE~Fivl~G~l~i~~-rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~e~~vLLiEp~  110 (140)
T 3d0j_A           47 HHSTDEQFILSAGKAILIT-AEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKDTKMMYVQDS  110 (140)
T ss_dssp             ESSCCEEEEEEESCEEEEE-EEEETTEEEEEEEECCTTCCEEECTTCEEEEEECTTCEEEEEEES
T ss_pred             CCCCCeEEEEEecEEEEEE-ecCcCCCCccceEEecCCCEEEeCCCccCcccCCCceEEEEEEeC
Confidence            3568999999999999998 4        347899999999999999999998889999999877

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=97.54  E-value=0.00021  Score=61.11  Aligned_cols=62  Identities=15%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC--------EEEEccCCcEEEeCCCCceeEEec
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--------SWYPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--------~~~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                      ++.+.++ =.|+....+| +|..+|-+|+|+|...+.+.+        +...+++||+..+|+|++|+=...
T Consensus        34 ~~~V~~v-gGPn~r~D~H-~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~  103 (176)
T 1zvf_A           34 GFTVMIV-GGPNERTDYH-INPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRF  103 (176)
T ss_dssp             SEEEEEE-CSSBCCSCEE-ECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEEC
T ss_pred             CEEEEEE-cCCCcCCcCc-CCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCccc
Confidence            4443333 1355668885 888889999999999988755        489999999999999999988665

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=97.47  E-value=0.00063  Score=59.52  Aligned_cols=79  Identities=16%  Similarity=0.171  Sum_probs=60.2

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEE-c---C-------CcEEEeccCcEEEe-CCCCceEEeeCCe
Q 022278          102 SHFVMYLANMQENARSALPPHDV-ERFIFVVQGSAMLTN-A---S-------GVSSKLMVDSYTYL-PPNFAHSLRAEGS  168 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v-~---g-------g~~~~L~~Gds~yf-pa~~~H~~~N~~~  168 (300)
                      .+|+.+++...||..++.|.|++ -.+++||+|+++-+. .   +       +++.+|.+|+..|+ |++--|++.|...
T Consensus        68 ~~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~  147 (200)
T 3eln_A           68 GKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSH  147 (200)
T ss_dssp             GTCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCS
T ss_pred             CceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCC
Confidence            47899999999999999998885 899999999998874 1   1       12679999999999 7778999999332


Q ss_pred             EEEEEEEeeccc
Q 022278          169 ATLVVFERRYAS  180 (300)
Q Consensus       169 a~vl~v~~~y~~  180 (300)
                      .+..+-.+.|-|
T Consensus       148 ~~~avSlHvY~p  159 (200)
T 3eln_A          148 TEPAVSLHLYSP  159 (200)
T ss_dssp             SCCEEEEEEEES
T ss_pred             CCCEEEEEeCCC
Confidence            222333345554

>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A

Probab=97.35  E-value=5.3e-06  Score=67.29  Aligned_cols=47  Identities=15%  Similarity=0.241  Sum_probs=42.5

Q ss_pred             CCccCCcccccccC-----CCCcceeeecCCCC-Chhh-----hhcccCCcceeeeee
Q 022278           24 GGFCSAPSILDRET-----SSKPMYWKVTNPTL-SPSH-----LQDLPGFTRSVYKRD   70 (300)
Q Consensus        24 ~~~~~~~~~a~r~~-----lsk~~~Sqver~~~-sps~-----I~~~lg~trs~f~~~   70 (300)
                      +.--|+++||++++     +|++||||+|||.. .||+     |++.||++..+|+.+
T Consensus        22 ~~~lT~~elA~~~~~~G~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~~yl~~~   79 (123)
T 3qwg_A           22 RGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTDD   79 (123)
T ss_dssp             TCSCCHHHHHHHHHHTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHTTSCTHHHHCH
T ss_pred             CCCCCHHHHHHHHcccCCCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHcCC
Confidence            34569999999998     99999999999996 8998     999999999999973

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=97.31  E-value=0.0059  Score=59.43  Aligned_cols=64  Identities=17%  Similarity=0.191  Sum_probs=46.7

Q ss_pred             cceEEEEEEec--CCcccCcceeeccceEEEEEEeeEEEEeCCE-E--EEccCCcEEEeCCCCceeEEec
Q 022278          218 FDFNIHIMDFQ--PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS-W--YPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       218 ~~~~~~~~tl~--PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~-~--~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                      .+|.+.++++.  +|..... ....-..++++++|+|.+..++. .  .++++||.+|++++..=.+.+.
T Consensus       355 ~eF~v~~~~~~~~~~~~~~~-~~~~~~~illv~~G~g~i~~~~~~~~~~~l~~G~~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          355 AEFSVLQTIFDKSKGGKQVI-EGLNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTAD  423 (440)
T ss_dssp             SSCEEEEEECCTTTCCEEEE-CCCSSCEEEEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred             CeEEEEEEEecCCCCceeEE-ecCCCcEEEEEEeCeEEEEeCCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence            46888888888  4532211 12334568999999999998775 4  7999999999999954456665

>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}

Probab=97.20  E-value=8.7e-06  Score=67.00  Aligned_cols=45  Identities=13%  Similarity=0.224  Sum_probs=41.5

Q ss_pred             CccCCcccccccC-----CCCcceeeecCCCC-Chhh-----hhcccCCcceeeee
Q 022278           25 GFCSAPSILDRET-----SSKPMYWKVTNPTL-SPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        25 ~~~~~~~~a~r~~-----lsk~~~Sqver~~~-sps~-----I~~~lg~trs~f~~   69 (300)
                      .=-|+++||+++|     +|++||||+|||.. .||+     |++.||++..+|+.
T Consensus        25 ~~~T~~elA~~~~~~G~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f~V~~~yl~~   80 (135)
T 3r1f_A           25 GPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTD   80 (135)
T ss_dssp             CCCCHHHHHHHHHTTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHHTSCTHHHHC
T ss_pred             CCCCHHHHHHHHcccCCCcCHHHHHHHHCCCCCCCCHHHHHHHHHHhCCCHHHHcC
Confidence            4469999999998     99999999999996 8998     99999999999986

>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}

Probab=97.19  E-value=2.5e-05  Score=61.18  Aligned_cols=39  Identities=3%  Similarity=-0.010  Sum_probs=35.9

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh---hhcccCCcce
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH---LQDLPGFTRS   65 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~---I~~~lg~trs   65 (300)
                      -||++||+++|+|+++||++|||..+|+.   |+.+||++.+
T Consensus        50 lTQ~eLA~~~gvs~~~is~~E~G~~~~~~l~~i~~aL~~~~~   91 (101)
T 4ghj_A           50 LTQSEVAEIAGIARKTVLNAEKGKVQLDIMIAILMALDLTEQ   91 (101)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHTTCCBHHHHHHHHHHTTCCGG
T ss_pred             CCHHHHHHHcCCCHHHHHHHHCCCCCHHHHHHHHHHcCCCcc
Confidence            48899999999999999999999999998   8899998754

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.10  E-value=0.00076  Score=62.66  Aligned_cols=76  Identities=9%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             EEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEE---cCCcEEEecc-C---cEEEeCCCCceEEee--CCeEE-EEE
Q 022278          105 VMYLANMQENARSALP-PHDVERFIFVVQGSAMLTN---ASGVSSKLMV-D---SYTYLPPNFAHSLRA--EGSAT-LVV  173 (300)
Q Consensus       105 ~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v---~gg~~~~L~~-G---ds~yfpa~~~H~~~N--~~~a~-vl~  173 (300)
                      ...+.++.||...+.| ++.-.|.++|++|++.+.+   ..|+.+.+.. |   +.+|+|+|..|.+.|  ++++. +.|
T Consensus       273 q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~~  352 (369)
T 3st7_A          273 QVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMW  352 (369)
T ss_dssp             EEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEEE
T ss_pred             eEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEEEe
Confidence            3456778999877777 5567799999999999943   2778899998 8   899999999999999  35555 445


Q ss_pred             EEeeccc
Q 022278          174 FERRYAS  180 (300)
Q Consensus       174 v~~~y~~  180 (300)
                      ....|.|
T Consensus       353 ~~~~y~~  359 (369)
T 3st7_A          353 VNEMFDP  359 (369)
T ss_dssp             ESSCCCS
T ss_pred             cCcccCC
Confidence            5666665

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=97.09  E-value=0.0033  Score=55.38  Aligned_cols=80  Identities=16%  Similarity=0.152  Sum_probs=61.8

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe-----CCE------EEEccCCcEEEeCCC-
Q 022278          207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-----GDS------WYPVQAGDVLWMAPF-  274 (300)
Q Consensus       207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~-----~g~------~~~v~~GD~i~~~~~-  274 (300)
                      ..|.++-.+....+.+-.+...||..+|. |-|...-.+.||+|+-....     +|.      ...+++||++++.|+ 
T Consensus        60 y~r~lL~~dp~~~f~v~~l~W~PGq~spi-HDH~swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~  138 (211)
T 3uss_A           60 YQQYLLHVDSRQRFSVVSFVWGPGQITPV-HDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRI  138 (211)
T ss_dssp             CEEEEEEECTTSSCEEEEEEECTTCBCCS-BCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTT
T ss_pred             eeEEEEecCCCCCEEEEEEEECCCCcCCC-CCCCeeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCC
Confidence            34677766655667777999999999998 45554457899999987643     333      478999999999998 


Q ss_pred             -CceeEEec-CCccE
Q 022278          275 -VPQWYAAL-GKTRT  287 (300)
Q Consensus       275 -~~H~~~n~-G~e~~  287 (300)
                       .-|.+.|. |+++.
T Consensus       139 g~IH~V~N~~~d~~a  153 (211)
T 3uss_A          139 GDVHQVSNAFSDRTS  153 (211)
T ss_dssp             BCCEEEEESCSSSCE
T ss_pred             CCEEEEccCCCCCCE
Confidence             89999998 46753

>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}

Probab=97.03  E-value=3.8e-05  Score=55.29  Aligned_cols=42  Identities=10%  Similarity=0.001  Sum_probs=39.2

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|++.+|++|+|...|+.     |+++||++...++.
T Consensus        23 sq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l~~   69 (73)
T 3omt_A           23 TNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIV   69 (73)
T ss_dssp             CHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBC
T ss_pred             CHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence            7899999999999999999999999998     99999999988875

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=96.99  E-value=0.0014  Score=58.62  Aligned_cols=71  Identities=13%  Similarity=0.046  Sum_probs=58.1

Q ss_pred             CcEEEEEEEEcCCCcC--CCCCCCceEEEEEEECEEEEEEcCCc---EEEeccCcEEEeCCCCceEEeeC----CeEEEE
Q 022278          102 SHFVMYLANMQENARS--ALPPHDVERFIFVVQGSAMLTNASGV---SSKLMVDSYTYLPPNFAHSLRAE----GSATLV  172 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~--~~~~h~gEEf~yVLeG~v~l~v~gg~---~~~L~~Gds~yfpa~~~H~~~N~----~~a~vl  172 (300)
                      +.|-+-+..+......  ..|.|+.=+++||++|+++ .+ +++   ++.+.+||.+++||+..|.+...    ++.+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~G~~~-~i-~~~~~~~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~~   82 (276)
T 3gbg_A            5 KSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAK-LI-DKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINVS   82 (276)
T ss_dssp             TTEEEEEEEECTTCEEEEEEEECSSCEEEEESSSCEE-EE-ETTTTEEEEECTTEEEEECTTCEEEEEEEECCSSCEEEE
T ss_pred             hhhhhhhhhhhcccchhccHhhhcceEEEEEecCceE-EE-CCccceeEEEcCCCEEEEcCCCceeeccccCCCcceEEE
Confidence            4677778888776554  3346888999999999999 99 899   99999999999999999999853    556655


Q ss_pred             EE
Q 022278          173 VF  174 (300)
Q Consensus       173 ~v  174 (300)
                      ++
T Consensus        83 ~i   84 (276)
T 3gbg_A           83 VI   84 (276)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=96.98  E-value=0.0027  Score=55.45  Aligned_cols=79  Identities=19%  Similarity=0.182  Sum_probs=59.2

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccce-EEEEEEeeEEEEe-----C-------CEEEEccCCcEEEe-C
Q 022278          207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQH-GLLLLEGQGIYRL-----G-------DSWYPVQAGDVLWM-A  272 (300)
Q Consensus       207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh-~~~iL~G~G~~~~-----~-------g~~~~v~~GD~i~~-~  272 (300)
                      ..|.|+-+ ....+.+-.+...||..+|. |.|...+ .++||+|+-....     +       +....+++||+.|+ +
T Consensus        58 y~R~ll~~-~~~~~~l~ll~W~PGq~Spi-HDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~  135 (200)
T 3eln_A           58 YTRNLVDQ-GNGKFNLMILCWGEGHGSSI-HDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYIND  135 (200)
T ss_dssp             CEEEEEEC-GGGTCEEEEEEECTTCBCCE-ECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECT
T ss_pred             eEEEeeec-CCCceEEEEEEECCCCcCCC-ccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecC
Confidence            45666543 22346666899999999997 6776444 5899999998763     2       23678999999999 7


Q ss_pred             CCCceeEEecC-CccE
Q 022278          273 PFVPQWYAALG-KTRT  287 (300)
Q Consensus       273 ~~~~H~~~n~G-~e~~  287 (300)
                      ++--|.+.|.+ +++.
T Consensus       136 ~~giH~V~N~s~~~~a  151 (200)
T 3eln_A          136 SIGLHRVENVSHTEPA  151 (200)
T ss_dssp             TTCEEEEECCCSSCCE
T ss_pred             CCcEEEEECCCCCCCE
Confidence            78899999999 5554

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=96.98  E-value=0.0014  Score=60.74  Aligned_cols=122  Identities=14%  Similarity=0.076  Sum_probs=69.9

Q ss_pred             cEEEeccCcEEEeCCCCceEEeeCCeEEEEEE-EeeccccCCCCcceeec--cCCCCCCcccCCceeEEEEeeCCCCCcc
Q 022278          143 VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF-ERRYASLENHITEQIVG--STDKQPLLETPGEVFQLRKLLPQAVPFD  219 (300)
Q Consensus       143 ~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v-~~~y~~~~g~~p~~~~~--~~~d~~~~~~~g~~~~~~~l~p~~~~~~  219 (300)
                      +...|++||.+|+|||+.|.+-...-+.+-.- .-.|.|.+=. -+..+.  ++...+....+. .   ..+.|   ..+
T Consensus       158 n~v~l~pGd~~~ipaGt~HA~~~G~~~Eiqa~SD~t~~pr~l~-v~~~~~vl~~~~~~~~~~~~-~---~~~~~---~~~  229 (300)
T 1zx5_A          158 NTFETTPYDTFVIRPGIPHAGEGLRVLEVSSNSTLAYFFNEND-WEKVKKVLNTKKVEEFEVKG-K---KGMAE---TEN  229 (300)
T ss_dssp             EEEECCTTCEEEECTTCCEEEESEEEEEEEESCCCCEESSTTT-HHHHHHHCCCSBCCGGGTBC-B---TTEEE---CSS
T ss_pred             ceeECCCCCEEEcCCCCceEcCCCCeeeecccCCceeecccCC-HHHHHhhccccCCCccccce-e---EEcCC---CCe
Confidence            46889999999999999999874112222110 0012222210 000001  010000000000 0   00112   236


Q ss_pred             eEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCce
Q 022278          220 FNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ  277 (300)
Q Consensus       220 ~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H  277 (300)
                      |.+.++++.+...+   .. .-. .++.+++| |.+..+|+..++++||.+|+|+++..
T Consensus       230 F~v~~~~~~~~~~~---~~-~~~~~il~v~~G-~~i~~~~~~~~l~~G~~~~ipa~~~~  283 (300)
T 1zx5_A          230 FGLEVVDVTGTAEI---KT-GGVMNILYAAEG-YFILRGKETADLHRGYSCLVPASTDS  283 (300)
T ss_dssp             EEEEEEEEEEEEEE---EC-CSBCEEEEEEES-CEEEESSSEEEECTTCEEEECTTCCE
T ss_pred             EEEEEEEECCceEE---ec-CCceEEEEEccc-EEEEeCCeEEEEccceEEEEeCCCce
Confidence            77888888753332   22 334 68999999 99999998999999999999999854

>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}

Probab=96.97  E-value=3.3e-05  Score=54.98  Aligned_cols=42  Identities=10%  Similarity=-0.010  Sum_probs=38.2

Q ss_pred             cCCcccccccC--CCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278           27 CSAPSILDRET--SSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK   68 (300)
Q Consensus        27 ~~~~~~a~r~~--lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~   68 (300)
                      -|+++||+++|  +|++.+|++|+|...|+.     |+++||++...|+
T Consensus        22 lsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~~~~l~   70 (71)
T 2ewt_A           22 LSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL   70 (71)
T ss_dssp             CCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGGGC
T ss_pred             CCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHc
Confidence            37899999999  999999999999999987     8999999988775

>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=96.91  E-value=3.8e-05  Score=55.98  Aligned_cols=42  Identities=12%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+++||+++|+|++.||++|+|...|+.     |+++||++...++.
T Consensus        17 sq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~   63 (77)
T 2k9q_A           17 TAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFD   63 (77)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHhC
Confidence            7889999999999999999999999987     99999999998876

>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*

Probab=96.91  E-value=3.7e-05  Score=56.58  Aligned_cols=43  Identities=2%  Similarity=-0.007  Sum_probs=39.7

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+++||+++|+|++.||++|+|...|+.     |+++|+++...++.
T Consensus        25 lsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~~~~l~~   72 (82)
T 3s8q_A           25 MTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE   72 (82)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred             CCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence            38899999999999999999999999998     99999999888765

>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}

Probab=96.85  E-value=3.7e-05  Score=56.62  Aligned_cols=42  Identities=10%  Similarity=0.127  Sum_probs=38.6

Q ss_pred             CCcccccccCCCCcceeeecCC-CCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNP-TLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~-~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|+++||++|+| ...|+.     |+++||++...++.
T Consensus        25 tq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~l~~   72 (78)
T 3qq6_A           25 SLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD   72 (78)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHHHHHH
T ss_pred             CHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence            7899999999999999999999 889987     99999999888765

>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3

Probab=96.84  E-value=4.6e-05  Score=56.57  Aligned_cols=42  Identities=10%  Similarity=0.071  Sum_probs=39.3

Q ss_pred             CCcccccccCCCCcceeeecCCCC-Chhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTL-SPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~-sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|++.||++|+|.. .|+.     |+++||++...++.
T Consensus        29 sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~~l~~   76 (86)
T 2ofy_A           29 SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAA   76 (86)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHT
T ss_pred             CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHhc
Confidence            899999999999999999999998 8987     99999999988875

>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3

Probab=96.81  E-value=7.6e-05  Score=53.29  Aligned_cols=42  Identities=10%  Similarity=-0.118  Sum_probs=38.1

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK   68 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~   68 (300)
                      -|+.+||+++|+|++.+|++|+|...|+.     |+++||++...++
T Consensus        27 ~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~~l~   73 (74)
T 1y7y_A           27 LSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF   73 (74)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC
T ss_pred             CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHc
Confidence            47899999999999999999999999987     8999999887765

>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}

Probab=96.81  E-value=6.3e-05  Score=55.27  Aligned_cols=42  Identities=12%  Similarity=0.050  Sum_probs=38.8

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|++.+|++|||...|+.     |+++||++...|++
T Consensus        27 tq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~~~~l~~   73 (80)
T 3kz3_A           27 SYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSP   73 (80)
T ss_dssp             CHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred             CHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhH
Confidence            7899999999999999999999999987     99999999887765

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=96.81  E-value=0.0062  Score=50.23  Aligned_cols=75  Identities=15%  Similarity=0.213  Sum_probs=55.8

Q ss_pred             ceEEEEEEecCCcc---cCcceeeccc-eEEEEEEeeEEEEeC--------CEEEEccCCcEEEeCCCCceeEEecCCcc
Q 022278          219 DFNIHIMDFQPGDF---LNVKEVHYNQ-HGLLLLEGQGIYRLG--------DSWYPVQAGDVLWMAPFVPQWYAALGKTR  286 (300)
Q Consensus       219 ~~~~~~~tl~PG~~---~p~~~~H~~e-h~~~iL~G~G~~~~~--------g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  286 (300)
                      .+.|.+..+.|...   +..-|.|..+ |.+++|+|+.++.+.        +....+++|+++.+|.|+.|--.+.  ++
T Consensus        24 ~W~Va~~n~~~~~~~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~--~e  101 (140)
T 3d0j_A           24 KWLVCIKNWKPDNDIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQ--KD  101 (140)
T ss_dssp             SEEEEEEECCGGGBTTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEEC--TT
T ss_pred             CEEEEEEeccCcCCcccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCC--Cc
Confidence            35566787788733   3445677666 778999999999987        4479999999999999999977763  44


Q ss_pred             EEEEEEeec
Q 022278          287 TRYLLYKDV  295 (300)
Q Consensus       287 ~~fi~~kd~  295 (300)
                      +..++.-+.
T Consensus       102 ~~vLLiEp~  110 (140)
T 3d0j_A          102 TKMMYVQDS  110 (140)
T ss_dssp             CEEEEEEES
T ss_pred             eEEEEEEeC
Confidence            555555443

>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A

Probab=96.78  E-value=5.7e-05  Score=58.47  Aligned_cols=42  Identities=2%  Similarity=0.000  Sum_probs=39.4

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+++||+++|+|++.||++|||...|+.     |+++||++...++.
T Consensus        43 tq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~l~~   89 (99)
T 3g5g_A           43 TQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE   89 (99)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred             CHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence            7899999999999999999999999998     99999999988875

>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A

Probab=96.71  E-value=7.2e-05  Score=55.17  Aligned_cols=43  Identities=7%  Similarity=-0.078  Sum_probs=38.9

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh---hhcccCCcceeeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH---LQDLPGFTRSVYKRD   70 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~---I~~~lg~trs~f~~~   70 (300)
                      -|+.+||+++|+|++.+|+++++ .+|+.   |+++||++...++..
T Consensus        23 lT~~~LA~~~Gvs~stls~~~~~-~~p~~~~~IA~aLgv~~~~L~~~   68 (74)
T 1neq_A           23 LSLSALSRQFGYAPTTLANALER-HWPKGEQIIANALETKPEVIWPS   68 (74)
T ss_dssp             CCHHHHHHHHSSCHHHHHHTTTS-SCHHHHHHHHHHTTSCHHHHCTT
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcC-CCccHHHHHHHHHCcCHHHHhHH
Confidence            48899999999999999999998 57876   999999999998874

>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}

Probab=96.65  E-value=6.3e-05  Score=55.32  Aligned_cols=43  Identities=9%  Similarity=-0.045  Sum_probs=39.2

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+++||+++|+|++.+|++|+|...|+.     |+++||++...++.
T Consensus        28 ltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~   75 (83)
T 3f6w_A           28 ITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLS   75 (83)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred             CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence            37899999999999999999999999987     99999999887765

>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}

Probab=96.64  E-value=8e-05  Score=59.22  Aligned_cols=43  Identities=2%  Similarity=-0.064  Sum_probs=37.8

Q ss_pred             cCCcccccccCCCCcceeeecCCCCCh------hh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSP------SH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sp------s~-----I~~~lg~trs~f~~   69 (300)
                      -||++||+++|+|+++||++|+|...|      +.     |+++||++...++.
T Consensus        21 lSq~eLA~~~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA~~Lgv~~~~L~~   74 (112)
T 2wus_R           21 ITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLK   74 (112)
T ss_dssp             CCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             CCHHHHHHHHCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHHHHhCcCHHHHHH
Confidence            478999999999999999999998865      22     88999999988876

>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}

Probab=96.63  E-value=7.7e-05  Score=58.77  Aligned_cols=43  Identities=7%  Similarity=-0.052  Sum_probs=40.2

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+++||+++|+|++.||++|+|...|+.     |+++||++...++.
T Consensus        35 ltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~l~~   82 (114)
T 3vk0_A           35 WSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLL   82 (114)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSCHHHHTS
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhC
Confidence            38999999999999999999999999998     99999999998875

>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A

Probab=96.63  E-value=9.5e-05  Score=51.45  Aligned_cols=43  Identities=9%  Similarity=-0.031  Sum_probs=38.8

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+.++|+++|+|++.+|++|+|...|+.     |+++||++...++.
T Consensus        15 ~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l~~   62 (66)
T 2xi8_A           15 ISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQ   62 (66)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEE
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence            37899999999999999999999999987     89999999887765

>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}

Probab=96.62  E-value=0.00015  Score=54.22  Aligned_cols=38  Identities=8%  Similarity=-0.067  Sum_probs=34.3

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcc
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTR   64 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~tr   64 (300)
                      -|+++||+++|+|+++||++|+|...|+.     |+++||++-
T Consensus        28 ltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~   70 (86)
T 3eus_A           28 LTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGLD   70 (86)
T ss_dssp             CCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTCGG
T ss_pred             CCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCc
Confidence            48899999999999999999999999998     888888753

>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}

Probab=96.56  E-value=8.1e-05  Score=53.80  Aligned_cols=43  Identities=5%  Similarity=-0.027  Sum_probs=39.2

Q ss_pred             cCCcccccccCCCCcceeeecCCCC-Chhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTL-SPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~-sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+.+||+++|+|++.||++|+|.. .|+.     |+++||++...++.
T Consensus        21 ~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~~~~l~~   69 (78)
T 3b7h_A           21 LTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFD   69 (78)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHHTC
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHhc
Confidence            3789999999999999999999999 8887     99999999988875

>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L

Probab=96.54  E-value=9.1e-05  Score=51.87  Aligned_cols=42  Identities=7%  Similarity=-0.058  Sum_probs=37.4

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK   68 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~   68 (300)
                      .|+.+||+++|+|++.+|++|+|...|+.     |++++|++...++
T Consensus        19 ~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l~   65 (68)
T 2r1j_L           19 IRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL   65 (68)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHh
Confidence            37899999999999999999999999987     8899998877654

>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*

Probab=96.52  E-value=0.00013  Score=54.61  Aligned_cols=42  Identities=12%  Similarity=0.040  Sum_probs=39.2

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|++.||++|+|...|+.     |+++||++...|+.
T Consensus        32 sq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l~~   78 (92)
T 1lmb_3           32 SQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP   78 (92)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred             CHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhh
Confidence            7899999999999999999999999987     99999999988875

>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3

Probab=96.51  E-value=0.0001  Score=53.04  Aligned_cols=43  Identities=14%  Similarity=0.053  Sum_probs=38.8

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+.+||+++|+|++.+|++|+|...|+.     |+++||++...++.
T Consensus        24 lsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~~~~l~~   71 (77)
T 2b5a_A           24 VSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFR   71 (77)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhc
Confidence            47899999999999999999999999987     89999998887764

>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2

Probab=96.50  E-value=0.0001  Score=52.91  Aligned_cols=43  Identities=7%  Similarity=-0.036  Sum_probs=39.1

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+.+||+++|+|++.+|++|+|...|+.     |+++||++...++.
T Consensus        19 ls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l~~   66 (76)
T 1adr_A           19 IRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK   66 (76)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHHHH
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence            37899999999999999999999999987     89999999888764

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=96.48  E-value=0.0076  Score=49.80  Aligned_cols=74  Identities=15%  Similarity=0.314  Sum_probs=54.0

Q ss_pred             EEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCc---EEEeccCcE-EEeCCCCceEEee-CCeEEEEEE-Eeecc
Q 022278          107 YLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGV---SSKLMVDSY-TYLPPNFAHSLRA-EGSATLVVF-ERRYA  179 (300)
Q Consensus       107 ~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~---~~~L~~Gds-~yfpa~~~H~~~N-~~~a~vl~v-~~~y~  179 (300)
                      ++...+||..-+.| +...++++++++|++++.+.+|+   ++.|..... +++||++.|.+.+ ...|.++++ +.+|.
T Consensus        38 ~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~~~~~L~~~~~gL~IppgvWh~~~~~s~~avllvlas~~Yd  117 (141)
T 2pa7_A           38 YIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSDCVMMVLASDYYD  117 (141)
T ss_dssp             EEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTTCEEEEEESSCCC
T ss_pred             EEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcEEEEEEECCCCcEEEeCCCEEEEEEEcCCCeEEEEECCCCcC
Confidence            34445577666666 34568999999999999995553   578887776 8999999999998 555666666 34444


Q ss_pred             c
Q 022278          180 S  180 (300)
Q Consensus       180 ~  180 (300)
                      |
T Consensus       118 ~  118 (141)
T 2pa7_A          118 E  118 (141)
T ss_dssp             G
T ss_pred             H
Confidence            4

>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}

Probab=96.47  E-value=0.00016  Score=57.05  Aligned_cols=43  Identities=5%  Similarity=-0.160  Sum_probs=39.8

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      .|+.+||+++|+|++.||++|+|...|+.     |+++||++...++.
T Consensus        37 ltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l~~   84 (111)
T 3mlf_A           37 LTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFL   84 (111)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGGEEC
T ss_pred             CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhC
Confidence            47899999999999999999999999988     99999999998875

>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A

Probab=96.47  E-value=0.00012  Score=57.61  Aligned_cols=43  Identities=7%  Similarity=-0.065  Sum_probs=40.0

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+.+||+++|+|++.||++|+|...|+.     |+++||++...++.
T Consensus        42 lsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l~~   89 (117)
T 3f52_A           42 VTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLI   89 (117)
T ss_dssp             CCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred             CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHHh
Confidence            38899999999999999999999999998     99999999988875

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=96.41  E-value=0.015  Score=47.97  Aligned_cols=80  Identities=14%  Similarity=0.075  Sum_probs=62.4

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC----EEEEccCCcE-EEeCCCCceeEEecCCccEEEEEEe
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD----SWYPVQAGDV-LWMAPFVPQWYAALGKTRTRYLLYK  293 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g----~~~~v~~GD~-i~~~~~~~H~~~n~G~e~~~fi~~k  293 (300)
                      .+.+-++...||..-+.|-|...++.+++++|...+.+++    +.+.+...+. +++||++.|++.|.++. .+.+..|
T Consensus        34 kRvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~~~~~L~~~~~gL~IppgvWh~~~~~s~~-avllvla  112 (141)
T 2pa7_A           34 KRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSD-CVMMVLA  112 (141)
T ss_dssp             CEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTT-CEEEEEE
T ss_pred             cEEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcEEEEEEECCCCcEEEeCCCEEEEEEEcCCC-eEEEEEC
Confidence            4666677778999999865556668899999999998765    3455555554 99999999999999885 8888888


Q ss_pred             ecCCCC
Q 022278          294 DVNRNP  299 (300)
Q Consensus       294 d~nr~~  299 (300)
                      +-.-||
T Consensus       113 s~~Yd~  118 (141)
T 2pa7_A          113 SDYYDE  118 (141)
T ss_dssp             SSCCCG
T ss_pred             CCCcCH
Confidence            765554

>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}

Probab=96.41  E-value=0.00052  Score=62.47  Aligned_cols=43  Identities=14%  Similarity=-0.024  Sum_probs=0.0

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+++||+++|+|++.||++|||...|+.     |+++||++...|+.
T Consensus        44 ~t~~~la~~~g~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~~l~~   91 (311)
T 4ich_A           44 GAQREFAAAIGLDESKLSKSLNGTRRFSPHELVRIAEHSGVTVNWLIN   91 (311)
T ss_dssp             ------------------------------------------------
T ss_pred             CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChhhhhc
Confidence            47899999999999999999999999988     99999999998876

>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}

Probab=96.40  E-value=0.00011  Score=59.59  Aligned_cols=43  Identities=7%  Similarity=0.095  Sum_probs=38.2

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----------hhcccCCcceeeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----------LQDLPGFTRSVYKRD   70 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----------I~~~lg~trs~f~~~   70 (300)
                      ||++||+++|+|++++|++|||...|+.           |+++||++...++..
T Consensus        18 tq~elA~~~gis~~~is~iE~g~~~~~~~~~~~~~~l~~ia~~L~v~~~~l~~~   71 (130)
T 3fym_A           18 TLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQA   71 (130)
T ss_dssp             CHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CHHHHHHHHCcCHHHHHHHHCCCCCCCchhhhHHHHHHHHHHHhCCCHHHHHHH
Confidence            8899999999999999999999976531           899999999988863

>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A

Probab=96.40  E-value=0.00016  Score=55.25  Aligned_cols=42  Identities=10%  Similarity=-0.028  Sum_probs=39.6

Q ss_pred             CCcccccccCCCCcc----eeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPM----YWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~----~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+++||+++|+|++.    ||++|+|...|+.     |+++||++...|+.
T Consensus        16 sq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~~l~~   66 (98)
T 3lfp_A           16 SQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYT   66 (98)
T ss_dssp             CHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGGGGGC
T ss_pred             CHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence            789999999999999    9999999999998     99999999999876

>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}

Probab=96.37  E-value=0.00011  Score=58.60  Aligned_cols=42  Identities=12%  Similarity=0.025  Sum_probs=39.8

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|+++||++|+|...|+.     |+++||++...++.
T Consensus        27 sq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~   73 (126)
T 3ivp_A           27 TREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFL   73 (126)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHS
T ss_pred             CHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence            8899999999999999999999999998     99999999998876

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=96.35  E-value=0.033  Score=50.84  Aligned_cols=88  Identities=13%  Similarity=0.041  Sum_probs=69.7

Q ss_pred             CCceeEEEEeeCCCC----CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCC--C
Q 022278          202 PGEVFQLRKLLPQAV----PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAP--F  274 (300)
Q Consensus       202 ~g~~~~~~~l~p~~~----~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~--~  274 (300)
                      +|.++.++.++|...    +.-..+.- ...||.-+|.|-|..+|=.-|+|+|+...++. |..-.+++||+-||.+  |
T Consensus        18 ~G~g~~v~R~~~~~~~~~~gpf~~ld~-~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~DS~Gn~~~i~~GdvQwMtAG~G   96 (277)
T 2p17_A           18 NSPIHRSGSVLEPGNWQEYDPFLLLME-DIFERGTFDVHPHRGIETVTYVISGELEHFDSKAGHSTLGPGDVQWMTAGRG   96 (277)
T ss_dssp             EETTEEEEEEECSSCHHHHTTEEEEEE-EEECTTCCCCEEECSEEEEEEEEESCEEEEETTTEEEEECTTCEEEEECTTC
T ss_pred             cCCCeEEeecCCcccccccCCEEEEec-CCCCCCCCCCCCCCCcEEEEEEEEeEEEEeeCCCCceEECCCeEEEEeCCCC
Confidence            355567777776432    23345666 77899989988777888888999999999987 7889999999999977  5


Q ss_pred             CceeEEecCCccEEEE
Q 022278          275 VPQWYAALGKTRTRYL  290 (300)
Q Consensus       275 ~~H~~~n~G~e~~~fi  290 (300)
                      +-|+=.|..++++.+|
T Consensus        97 I~HsE~~~~~~~~~~l  112 (277)
T 2p17_A           97 VVHKEDPASGSTVHSL  112 (277)
T ss_dssp             EEEEEEECTTCCEEEE
T ss_pred             EEEEeecCCCCCEEEE
Confidence            6799999877888775

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=96.33  E-value=0.021  Score=52.60  Aligned_cols=88  Identities=11%  Similarity=-0.051  Sum_probs=70.9

Q ss_pred             CceeEEEEeeCC-C-CC--cceEEEEEEecCCcccCcceeeccceEEEEE-EeeEEEEeC-CEEEEccCCcEEEeCCC--
Q 022278          203 GEVFQLRKLLPQ-A-VP--FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLL-EGQGIYRLG-DSWYPVQAGDVLWMAPF--  274 (300)
Q Consensus       203 g~~~~~~~l~p~-~-~~--~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL-~G~G~~~~~-g~~~~v~~GD~i~~~~~--  274 (300)
                      |.++.++.++|. + ..  .-..+.-+.+.|+.-+|.|-|...|-.-|++ +|+...++. |..-.+++||+-||.+|  
T Consensus        19 G~G~~v~R~~~~~~~~~~gpf~~ld~~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~DS~Gn~~~i~~GdvQwMtAG~G   98 (290)
T 1j1l_A           19 GVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRG   98 (290)
T ss_dssp             TBTEEEEECTTSTTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSCEEEECTTCEEEEECTTC
T ss_pred             CCCeEEEEeCCCccccccCcEEEEEccccCCCCCCCCCCCCCeEEEEEECcceEEEEeeCCCCceEECCCcEEEEeCCCC
Confidence            556777777753 2 22  3467889999999888887777888788999 999999987 78899999999999765  


Q ss_pred             CceeEEecCCccEEEE
Q 022278          275 VPQWYAALGKTRTRYL  290 (300)
Q Consensus       275 ~~H~~~n~G~e~~~fi  290 (300)
                      +-|+=.|..++++.+|
T Consensus        99 I~HsE~~~~~~~~~~l  114 (290)
T 1j1l_A           99 ILHAEMPCSEEPAHGL  114 (290)
T ss_dssp             EEEEEEECSSSCEEEE
T ss_pred             EEEEeEcCCCCCEEEE
Confidence            6798889877788775

>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13

Probab=96.33  E-value=0.00028  Score=56.67  Aligned_cols=44  Identities=18%  Similarity=0.059  Sum_probs=38.8

Q ss_pred             cCCcccccccCCCCcceeeecCCCC-Chhh-----hhcccCCcceeeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTL-SPSH-----LQDLPGFTRSVYKRD   70 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~-sps~-----I~~~lg~trs~f~~~   70 (300)
                      -||++||+++|+|++.||++|||.. .|+.     |+++||++...++..
T Consensus        54 lTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~Lgv~~~~l~~~  103 (120)
T 2o38_A           54 LSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIRK  103 (120)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCcEEeecC
Confidence            3789999999999999999999998 8886     899999988877653

>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13

Probab=96.31  E-value=0.00023  Score=52.74  Aligned_cols=42  Identities=7%  Similarity=-0.007  Sum_probs=37.3

Q ss_pred             CCcccccccCCCCcceeeecCCCC-Chhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTL-SPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~-sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|++.+|++|+|.. .|+.     |+++||++...++.
T Consensus        33 sq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~~~~~l~~   80 (83)
T 2a6c_A           33 TQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINIK   80 (83)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCCCC
T ss_pred             CHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCeEEEeC
Confidence            789999999999999999999998 4876     89999998876654

>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}

Probab=96.31  E-value=0.00023  Score=51.08  Aligned_cols=43  Identities=9%  Similarity=0.028  Sum_probs=39.4

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      .|+.+||+++|+|++.+|++|+|...|+.     |+++||++...++.
T Consensus        24 ~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l~~   71 (76)
T 3bs3_A           24 RTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLIN   71 (76)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBC
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence            47899999999999999999999999987     99999999988875

>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}

Probab=96.25  E-value=0.00019  Score=56.21  Aligned_cols=43  Identities=16%  Similarity=0.067  Sum_probs=39.3

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      .|+.+||+++|+|++.||++|||...|+.     |+++||++...|..
T Consensus        28 ltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs~~~ll~   75 (104)
T 3trb_A           28 MSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFWLN   75 (104)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence            57899999999999999999999999888     99999999887764

>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}

Probab=96.24  E-value=0.00017  Score=54.55  Aligned_cols=43  Identities=14%  Similarity=0.023  Sum_probs=39.6

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+.+||+++|+|++.||++|+|...|+.     |+++||++...++.
T Consensus        23 lsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~~~~l~~   70 (94)
T 2kpj_A           23 KTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIE   70 (94)
T ss_dssp             SCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHS
T ss_pred             CCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence            47899999999999999999999999987     99999999998876

>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12

Probab=96.23  E-value=0.00019  Score=53.92  Aligned_cols=43  Identities=5%  Similarity=0.026  Sum_probs=38.8

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+++||+++|+|++.||++|+|...|+.     |+++|+++...++.
T Consensus        27 lsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~l~~   74 (91)
T 1x57_A           27 LTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDI   74 (91)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSSTTT
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHcc
Confidence            37899999999999999999999999987     89999999888654

>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*

Probab=96.20  E-value=0.00023  Score=52.63  Aligned_cols=43  Identities=2%  Similarity=-0.004  Sum_probs=38.6

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+.+||+++|+|++.||++|+|...|+.     |+++||++...+..
T Consensus        26 lsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l~~   73 (88)
T 2wiu_B           26 WTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDA   73 (88)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC-
T ss_pred             CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHhcc
Confidence            47899999999999999999999999987     99999999888763

>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}

Probab=96.19  E-value=0.00015  Score=56.78  Aligned_cols=42  Identities=7%  Similarity=-0.087  Sum_probs=39.5

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|++.+|++|+|...|+.     |+++||++...++.
T Consensus        24 sq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~l~~   70 (114)
T 3op9_A           24 KNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVG   70 (114)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHT
T ss_pred             CHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhc
Confidence            7899999999999999999999999998     99999999998876

>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*

Probab=96.04  E-value=0.00022  Score=50.35  Aligned_cols=43  Identities=0%  Similarity=-0.088  Sum_probs=37.7

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs~f~~   69 (300)
                      -|+.+||+++|+|++.+|++|+|...|..    |++.||++...++.
T Consensus        17 lsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~i~~~l~~~~~~l~~   63 (71)
T 1zug_A           17 MTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQY   63 (71)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHTTCCSSCSTHHHHHHHTTSCHHHHHH
T ss_pred             CCHHHHHHHhCCCHHHHHHHHcCCCCChHHHHHHHHHHCCCHHHHhC
Confidence            37899999999999999999999887755    88999998887764

>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A

Probab=96.02  E-value=0.00025  Score=49.80  Aligned_cols=43  Identities=7%  Similarity=0.059  Sum_probs=38.0

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs~f~~   69 (300)
                      .|+.+||+++|+|++.+|++|+|...|+.    |++.||++...++.
T Consensus        15 lsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~la~~l~~~~~~l~~   61 (69)
T 1r69_A           15 LNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLN   61 (69)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHTTSCSSCTTHHHHHHHTTCCHHHHHH
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCchHHHHHHHHHCcCHHHHhC
Confidence            37899999999999999999999988875    88999998887764

>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}

Probab=95.96  E-value=0.00024  Score=58.53  Aligned_cols=43  Identities=12%  Similarity=0.162  Sum_probs=39.8

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+.+||+++|+|++++|++|+|...|+.     |+++||++...|+.
T Consensus        82 lTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~lgv~~~~l~~  129 (141)
T 3kxa_A           82 FTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRA  129 (141)
T ss_dssp             CCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHHH
Confidence            38899999999999999999999999988     99999999988875

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=95.96  E-value=0.05  Score=46.39  Aligned_cols=72  Identities=17%  Similarity=0.024  Sum_probs=54.6

Q ss_pred             EEecCCcccCcceeeccceEEEEEEeeEEEEeC---------CEEEE--cc---CCcEEEeCCCCceeEEecCCccEEEE
Q 022278          225 MDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---------DSWYP--VQ---AGDVLWMAPFVPQWYAALGKTRTRYL  290 (300)
Q Consensus       225 ~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~---------g~~~~--v~---~GD~i~~~~~~~H~~~n~G~e~~~fi  290 (300)
                      ..-.||..=+.|-|+.+..-+.+++|+....+.         |+|..  +.   ..-.+|+|+|+.|+|.|.++++..++
T Consensus        58 s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~l  137 (174)
T 3ejk_A           58 SEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVA  137 (174)
T ss_dssp             EEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEE
T ss_pred             EECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEE
Confidence            334789888887666777889999999988763         23444  43   44689999999999999999888777


Q ss_pred             EEeecC
Q 022278          291 LYKDVN  296 (300)
Q Consensus       291 ~~kd~n  296 (300)
                      |..+--
T Consensus       138 y~~s~~  143 (174)
T 3ejk_A          138 NCTDIP  143 (174)
T ss_dssp             EEESSC
T ss_pred             EECCCc
Confidence            765543

>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A

Probab=95.93  E-value=0.00052  Score=52.01  Aligned_cols=42  Identities=7%  Similarity=-0.088  Sum_probs=38.2

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcc--cCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDL--PGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~--lg~trs~f~~   69 (300)
                      |+.+||+++|+|++.||++|+|...|+.     |+++  ++++...|+.
T Consensus        19 tq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~~~v~~~~l~~   67 (99)
T 2l49_A           19 SRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMT   67 (99)
T ss_dssp             CHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSSSSSSSSSSTTTS
T ss_pred             CHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCHHHHHc
Confidence            8899999999999999999999999987     8999  7888887765

>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.92  E-value=0.0013  Score=54.69  Aligned_cols=43  Identities=12%  Similarity=-0.121  Sum_probs=0.0

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+++||+++|+|++.+|++|+|...|+.     |++.+|++...++.
T Consensus        15 ltq~elA~~lgis~~~vs~~e~G~~~~~~~~~~~la~~~~v~~~~l~~   62 (158)
T 2p5t_A           15 LTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVG   62 (158)
T ss_dssp             ------------------------------------------------
T ss_pred             CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence            48899999999999999999999999987     88888988887775

>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}

Probab=95.90  E-value=0.00032  Score=50.88  Aligned_cols=39  Identities=5%  Similarity=-0.009  Sum_probs=32.8

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh----hhcccCCccee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRSV   66 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs~   66 (300)
                      |++++|+++|+|++.+|++|+|...|+.    ++.+++.+...
T Consensus        26 tq~elA~~~gvs~~tis~~E~G~~~p~~~~~~l~~~l~~~p~~   68 (73)
T 3fmy_A           26 TQKEASEIFGGGVNAFSRYEKGNAXPHPSTIKLLRVLDKHPEL   68 (73)
T ss_dssp             CHHHHHHHHCSCTTHHHHHHTTSSCCCHHHHHHHHHHHHCGGG
T ss_pred             CHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHCCCHHH
Confidence            7899999999999999999999999986    66666655443

>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A

Probab=95.68  E-value=0.00043  Score=53.43  Aligned_cols=42  Identities=10%  Similarity=0.127  Sum_probs=39.0

Q ss_pred             CCcccccccCCCCcceeeecCC-CCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNP-TLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~-~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|++.+|++|+| ...|+.     |+++||++...++.
T Consensus        16 tq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~~l~~   63 (111)
T 1b0n_A           16 SLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD   63 (111)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHC
T ss_pred             CHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence            7899999999999999999999 888987     99999999988875

>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}

Probab=95.65  E-value=0.00043  Score=53.28  Aligned_cols=43  Identities=14%  Similarity=0.034  Sum_probs=38.6

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+.+||+++|+|++.+|++|+|...|+.     |+++||++...|+.
T Consensus        32 ltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~v~~~~ll~   79 (104)
T 3cec_A           32 INTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLN   79 (104)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHCcCHHHHHh
Confidence            47899999999999999999999999987     88999999877654

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=95.63  E-value=0.039  Score=47.99  Aligned_cols=76  Identities=16%  Similarity=0.078  Sum_probs=61.0

Q ss_pred             EEEEEEecCCcccCcceeeccc-----eEEEEEEe-eEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEee
Q 022278          221 NIHIMDFQPGDFLNVKEVHYNQ-----HGLLLLEG-QGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       221 ~~~~~tl~PG~~~p~~~~H~~e-----h~~~iL~G-~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd  294 (300)
                      .+....|.||++|+. |..+..     |.-++.-. ...+++||+.+.-++|..+++..-.+|+..|.|++ -+.+++=|
T Consensus       103 ~a~fs~L~pG~~I~p-H~g~~n~~lR~HL~L~~p~~~~~i~V~~~~~~w~eGe~~~fDds~~Hev~N~~d~-~RvvL~~D  180 (197)
T 3rcq_A          103 QIKYSIMHPGTHVWP-HTGPTNCRLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASS-FRLIFIVD  180 (197)
T ss_dssp             EEEEEEECTTEEEEE-ECCSCTTEEEEEEEEECCSSSEEEEETTEEECCCBTCEEEECTTSCEEEEECSSS-CEEEEEEE
T ss_pred             eEEEEEeCCCCCcCC-eeCCCCCeEEEEEEEEeCCCCcEEEECCEEEEeeCCcEEEEcCCeEEEEEECCCC-CEEEEEEe
Confidence            467888999999986 455432     44444444 68899999999999999999999999999999987 67788878


Q ss_pred             cCCC
Q 022278          295 VNRN  298 (300)
Q Consensus       295 ~nr~  298 (300)
                      +-|-
T Consensus       181 ~~rP  184 (197)
T 3rcq_A          181 VWHP  184 (197)
T ss_dssp             EECT
T ss_pred             eeCC
Confidence            7663

>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}

Probab=95.46  E-value=0.00057  Score=53.27  Aligned_cols=43  Identities=7%  Similarity=-0.032  Sum_probs=39.0

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+.+||+++|+|++.+|++|+|...|+.     |+++||++...++.
T Consensus        25 lsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~~~~~~l~~   72 (113)
T 2eby_A           25 LKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLN   72 (113)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHHc
Confidence            47899999999999999999999998987     99999999887764

>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}

Probab=95.43  E-value=0.00057  Score=49.92  Aligned_cols=43  Identities=12%  Similarity=0.013  Sum_probs=36.1

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhccc----CCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLP----GFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~l----g~trs~f~~   69 (300)
                      -|+.+||+++|+|++.||++|+|...|+.     ++..|    +++...++.
T Consensus        24 lsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~~l~~   75 (84)
T 2ef8_A           24 LSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLK   75 (84)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHHHHHc
Confidence            37899999999999999999999999994     44444    888887764

>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}

Probab=95.43  E-value=0.001  Score=61.48  Aligned_cols=40  Identities=18%  Similarity=0.153  Sum_probs=36.5

Q ss_pred             cCCcccccccCCCCcceeeecCCCC-Chhh-----hhcccCCccee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTL-SPSH-----LQDLPGFTRSV   66 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~-sps~-----I~~~lg~trs~   66 (300)
                      -|+++||+++|+|+++||++|+|.. .||.     |+++|+++...
T Consensus        26 LtqeelA~~~gvS~~~is~iE~G~~~~ps~~~l~~lA~aL~v~~~e   71 (292)
T 3pxp_A           26 WTQEVLAERTQLPKRTIERIENGSLAHLDADILLRLADALELTIGE   71 (292)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHTCCSCCCHHHHHHHHHHTTCCHHH
T ss_pred             CCHHHHHHHHCcCHHHHHHHHCCCCCCCCHHHHHHHHHhcCCCHHH
Confidence            3889999999999999999999997 8998     99999998765

>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1

Probab=95.42  E-value=0.001  Score=53.15  Aligned_cols=38  Identities=8%  Similarity=-0.018  Sum_probs=32.3

Q ss_pred             CCcccccccCCCCcceeeecCC------CCChhh-----hhcccCCcce
Q 022278           28 SAPSILDRETSSKPMYWKVTNP------TLSPSH-----LQDLPGFTRS   65 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~------~~sps~-----I~~~lg~trs   65 (300)
                      ||++||+++|+|++.||++|+|      ...|+.     |+.+++++..
T Consensus         7 TQ~eLA~~~Gvs~~~is~~E~G~~~~~~~~~p~~~~l~~la~~l~v~~~   55 (122)
T 1nr3_A            7 SQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLKSPVRILCR   55 (122)
T ss_dssp             SSCSTHHHHHHCCSSSCCHHHHHHTTCSSSSCHHHHHHHHCCCEEEEEC
T ss_pred             CHHHHHHHhCCCHHHHHHHHcCCCccchhcccCHHHHHHHHHHHccccc
Confidence            7999999999999999999999      888887     5566665543

>1yll_A PA5104, conserved hypothetical protein; structural genomics, beta-BA PSI, protein structure initiative, midwest center for struc genomics; 1.64A {Pseudomonas aeruginosa} SCOP: b.82.1.17

Probab=95.31  E-value=0.98  Score=39.18  Aligned_cols=163  Identities=14%  Similarity=0.080  Sum_probs=94.0

Q ss_pred             eEeCCCCeeeccCCCCCcceEEEEecCCCC--CcEEEE--EEEEcCCCcCCCCCCCceEEEEEEECE-EEEEEcCCcEEE
Q 022278           72 ALITPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMY--LANMQENARSALPPHDVERFIFVVQGS-AMLTNASGVSSK  146 (300)
Q Consensus        72 av~~~e~~~~~~~p~~~~~~~~~L~sp~~g--~~f~~~--lv~l~PG~~~~~~~h~gEEf~yVLeG~-v~l~v~gg~~~~  146 (300)
                      .+++.+++...+=.+-.|.+-.+. .|...  +.|...  +.++...+... .-.+.++.+.+|+|. ++|.. +++...
T Consensus         7 ~ii~~~d~~~~pWkNGgG~TrEI~-~P~~~~~~~F~wRiSiA~V~~~g~FS-~FpGidR~i~lL~G~g~~L~~-~~~~~~   83 (200)
T 1yll_A            7 RILRAVDYPRMPWKNGAGSTEEIA-RDGGDGLDGFGWRLSIADVGESGGFS-GFAGYQRIISVLEGGGMRLRV-DGAESA   83 (200)
T ss_dssp             EEECGGGCCEEC-----CEEEEEE-ESSCSGGGSCSEEEEEEEECSCEEEC-CCTTCEEEEEEEESSCEEEEE-TTEECC
T ss_pred             EEECHHHCCcccccCCCEeEEEEE-ecCCCCcCCceEEEEEEEeccCCCCC-CCCCccEEEEEEeCCcEEEec-CCCccc
Confidence            356666665532111134444455 65432  344443  55665532221 146889999999998 99998 776544


Q ss_pred             e-ccCcEEEeCCCCceEEee-CCeEEEEEEEeeccccCCCCcceeeccCCCCCCcccCCceeEEEEeeCCCCCcceEEEE
Q 022278          147 L-MVDSYTYLPPNFAHSLRA-EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHI  224 (300)
Q Consensus       147 L-~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~p~~~~~~~~~~~  224 (300)
                      | ++.+-+.|+.+.+-.-+. +.+++-+-++  |.+-. +..                    .++++--..        .
T Consensus        84 L~~~~~p~~F~G~~~v~a~L~~G~~~DfNlM--~rr~~-~~~--------------------~v~~~~~~~--------~  132 (200)
T 1yll_A           84 PLRARQAFAFSGDSEVHCTLLDGAIRDFNLI--YAPRR-HRA--------------------RLQWLRVEG--------E  132 (200)
T ss_dssp             CBCBTCCEEEETTSCEEEEESSSCEEEEEEE--ECTTT-EEE--------------------EEEEEEEEE--------E
T ss_pred             cCCCCCcEEeCCCCcEEEEECCCCEEEEEEE--EcCCc-cEE--------------------EEEEEecCC--------C
Confidence            7 889999998888776665 5666655553  22100 000                    111110000        0


Q ss_pred             EEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCCCCce
Q 022278          225 MDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQ  277 (300)
Q Consensus       225 ~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~~~~H  277 (300)
                      ..+.+.+         ..-.+|+++|+-.+..+ ++...+.+||.+++....+.
T Consensus       133 ~~~~~~~---------~~~~v~~l~G~~~v~~~~~~~~~L~~~d~l~~~~~~~~  177 (200)
T 1yll_A          133 LDWHGTA---------STLLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQGL  177 (200)
T ss_dssp             EEEEECC---------SEEEEEESSSCEEEEETTEEEEEECTTCEEEEESCCSC
T ss_pred             eeEcCCC---------CEEEEEEccCcEEEEcCCCceeecCCCCEEEEeCCCcc
Confidence            0011111         11358999999999877 68899999999999876544

>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}

Probab=95.31  E-value=0.0015  Score=50.92  Aligned_cols=40  Identities=5%  Similarity=0.011  Sum_probs=36.1

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCccee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSV   66 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~   66 (300)
                      -|+.+||+++|+|++.||++|+|...|+.     |+++||++...
T Consensus        50 lsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~e   94 (107)
T 2jvl_A           50 MTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRG   94 (107)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCBSSS
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHhh
Confidence            47899999999999999999999999987     88999988765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=95.30  E-value=0.0024  Score=56.76  Aligned_cols=42  Identities=5%  Similarity=0.042  Sum_probs=38.5

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+++||+++ +|++.+|++|||...|+.     |++.||++...|+.
T Consensus        19 ~tq~~la~~~-~s~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~   65 (293)
T 2qfc_A           19 LTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYE   65 (293)
T ss_dssp             CCTTTTTTTT-SCHHHHHHHHTSSSCCCHHHHHHHTTTSCCCTHHHHH
T ss_pred             CCHHHHHHHH-cCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhc
Confidence            3899999999 999999999999999998     99999999887764

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=95.29  E-value=0.071  Score=40.98  Aligned_cols=61  Identities=11%  Similarity=0.116  Sum_probs=47.1

Q ss_pred             EEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278          110 NMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  173 (300)
Q Consensus       110 ~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~  173 (300)
                      .|.||.- .. .-...|..-|++|++++.+ .|  +..+.++||++.+|++....++-.+++..++
T Consensus        29 Vm~pGey-tF-~T~~~E~M~vvsG~~~V~l-pg~~ew~~~~aGesF~Vpans~F~l~v~~~~~YlC   91 (94)
T 2oyz_A           29 VMLPGEY-TF-GTQAPERMTVVKGALVVKR-VGEADWTTYSSGESFDVEGNSSFELQVKDATAYLC   91 (94)
T ss_dssp             EECSEEE-EE-EESSCEEEEEEESEEEEEE-TTCSSCEEEETTCEEEECSSEEEEEEESSCEEEEE
T ss_pred             EEeceEE-EE-cCCCeEEEEEEEeEEEEEc-CCCCcCEEECCCCEEEECCCCEEEEEEcccEeEEE
Confidence            3567632 22 2345788899999999999 44  5799999999999999999999876666554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=95.29  E-value=0.0011  Score=59.09  Aligned_cols=41  Identities=5%  Similarity=0.055  Sum_probs=38.8

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+++||+++ +|++.||++|||.+.||.     |++.||++...|+.
T Consensus        20 tq~~la~~~-~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~~~~~   65 (293)
T 3u3w_A           20 TQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYE   65 (293)
T ss_dssp             CHHHHHTTT-SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHH
T ss_pred             CHHHHHHHh-CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhC
Confidence            789999999 999999999999999999     99999999998876

>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}

Probab=95.21  E-value=0.00052  Score=50.16  Aligned_cols=42  Identities=5%  Similarity=0.019  Sum_probs=37.2

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh----hhcccC--Ccceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPG--FTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg--~trs~f~~   69 (300)
                      |+.+||+++|+|++.||++|+|...|..    |+++||  ++...+++
T Consensus        13 sq~~lA~~lgvs~~~is~~e~g~~~p~~~l~~ia~~l~~~v~~~~l~p   60 (79)
T 3bd1_A           13 SVSALAASLGVRQSAISNWRARGRVPAERCIDIERVTNGAVICRELRP   60 (79)
T ss_dssp             SHHHHHHHHTCCHHHHHHHHHHTCCCGGGHHHHHHHTTTSSCHHHHCT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCcHHHhCc
Confidence            8999999999999999999999988833    999999  98877754

>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A

Probab=94.95  E-value=0.001  Score=50.04  Aligned_cols=42  Identities=7%  Similarity=-0.005  Sum_probs=37.5

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK   68 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~   68 (300)
                      -|+.+||+++|+|++.+|++|+|...|+.     |+++||++...+.
T Consensus        22 ltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l~v~~~~~l   68 (94)
T 2ict_A           22 VSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWL   68 (94)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHH
T ss_pred             CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHH
Confidence            37899999999999999999999999977     9999999987454

>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A

Probab=94.91  E-value=0.0015  Score=60.35  Aligned_cols=42  Identities=17%  Similarity=0.071  Sum_probs=39.3

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -||+++|+++ +|++.+|++|||.+.||.     |++.+|++...|+.
T Consensus        17 ltq~~la~~~-is~~~is~~E~g~~~~~~~~l~~i~~~l~v~~~~~~~   63 (317)
T 2awi_A           17 YHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEILN   63 (317)
T ss_dssp             CCHHHHHTTT-SCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHHHHHH
T ss_pred             CCHHHHHHHh-cCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHHHHh
Confidence            3789999999 999999999999999998     99999999999886

>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3

Probab=94.77  E-value=0.00061  Score=52.12  Aligned_cols=43  Identities=5%  Similarity=-0.079  Sum_probs=36.3

Q ss_pred             cCCcccccccCCCCcceeeecCCCCChhh----hhcccCCcceeeee
Q 022278           27 CSAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRSVYKR   69 (300)
Q Consensus        27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs~f~~   69 (300)
                      -|+++||+++|+|++.||++|+|...|+.    |+++|+++...+..
T Consensus        44 lsq~elA~~lgvs~~~is~~E~G~~~p~~~~~~l~~~l~~~~~~l~~   90 (99)
T 2ppx_A           44 LTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLKIIAVDPEGTAA   90 (99)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHHCHHHHHH
T ss_pred             CCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHCcCHHHHHH
Confidence            47899999999999999999999999984    77777777665543

>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*

Probab=94.75  E-value=0.0013  Score=49.40  Aligned_cols=28  Identities=18%  Similarity=0.150  Sum_probs=26.2

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH   55 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~   55 (300)
                      +|.+||+++|+|.+.||.+|||...|+.
T Consensus        34 kQ~eLAK~iGIsqsTLSaIenG~~~PsL   61 (83)
T 2l1p_A           34 NQSSLAKECPLSQSMISSIVNSTYYANV   61 (83)
T ss_dssp             CHHHHHHHSSSCHHHHHHHHTCSSCCCC
T ss_pred             CHHHHHHHcCCCHHHHHHHHcCCCCCCc
Confidence            5789999999999999999999999994

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=94.57  E-value=0.19  Score=42.79  Aligned_cols=74  Identities=14%  Similarity=0.039  Sum_probs=52.7

Q ss_pred             EEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCc----------EEEec---cCcEEEeCCCCceEEee-CC-eEEE-
Q 022278          109 ANMQENARSALP-PHDVERFIFVVQGSAMLTNASGV----------SSKLM---VDSYTYLPPNFAHSLRA-EG-SATL-  171 (300)
Q Consensus       109 v~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~----------~~~L~---~Gds~yfpa~~~H~~~N-~~-~a~v-  171 (300)
                      ....+|---+.| +....++++|++|++...+.|.+          .+.|.   ..-.+|+|+|..|.+.| .. .|.+ 
T Consensus        58 s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~l  137 (174)
T 3ejk_A           58 SEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVA  137 (174)
T ss_dssp             EEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEE
T ss_pred             EECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEE
Confidence            344666555666 44578999999999988773432          56787   56789999999999998 43 5655 


Q ss_pred             EEEEeeccccC
Q 022278          172 VVFERRYASLE  182 (300)
Q Consensus       172 l~v~~~y~~~~  182 (300)
                      .+....|.|.+
T Consensus       138 y~~s~~Y~p~~  148 (174)
T 3ejk_A          138 NCTDIPHRQGE  148 (174)
T ss_dssp             EEESSCCCTTS
T ss_pred             EECCCccCCCC
Confidence            45566676644

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=94.54  E-value=0.32  Score=43.35  Aligned_cols=81  Identities=10%  Similarity=0.034  Sum_probs=59.7

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEe-------------------eEEEEeCCEEEEc--------cCCcEEE
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEG-------------------QGIYRLGDSWYPV--------QAGDVLW  270 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G-------------------~G~~~~~g~~~~v--------~~GD~i~  270 (300)
                      +.++--++.+.||...|.|-|..-+|.+...-|                   -..+..||.++.+        +||.-|-
T Consensus       104 k~YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiT  183 (246)
T 3kmh_A          104 KCYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESIC  183 (246)
T ss_dssp             CCEEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEE
T ss_pred             CcceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEe
Confidence            478888999999999999666667777777766                   4456677777766        4555588


Q ss_pred             eCCCCceeEEecCC-ccEEEEEEeecCCC
Q 022278          271 MAPFVPQWYAALGK-TRTRYLLYKDVNRN  298 (300)
Q Consensus       271 ~~~~~~H~~~n~G~-e~~~fi~~kd~nr~  298 (300)
                      ++||.-|||.+.+. .+...-=.--||.|
T Consensus       184 l~Pg~~H~F~ae~g~G~vligEVSt~NDD  212 (246)
T 3kmh_A          184 LPPGLYHSFWAEAGFGDVLVGEVSSVNDD  212 (246)
T ss_dssp             ECTTEEEEEEECTTSCCEEEEEEEECCCT
T ss_pred             cCCCCEEEEEecCCCccEEEEEcccCcCC
Confidence            88899999999876 35555445555554

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=94.37  E-value=0.23  Score=39.18  Aligned_cols=64  Identities=11%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             EEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278          109 ANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  173 (300)
Q Consensus       109 v~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~  173 (300)
                      -.|.||...-...-...|..-|++|++++.+ .|  +..+..+|+++.+|++....++-.+++..++
T Consensus        42 GVm~PGe~~YtF~T~~~E~MevvsG~l~V~L-pg~~eW~~~~aGesF~VpanssF~lkv~~~~~Y~C  107 (111)
T 3hqx_A           42 GVILPTEQPLTFETHVPERMEIISGECRVKI-ADSTESELFRAGQSFYVPGNSLFKIETDEVLDYVC  107 (111)
T ss_dssp             EEECCCSSCEEEECSSCEEEEEEESEEEEEE-TTCSSCEEEETTCEEEECTTCEEEEECSSCEEEEE
T ss_pred             EEEeccccceEEcCCCcEEEEEEEeEEEEEc-CCcccCEEeCCCCEEEECCCCcEEEEECcceeEEE
Confidence            3457874111113445788899999999999 44  5689999999999999999999777666665

>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} SCOP: b.82.1.0

Probab=94.21  E-value=0.59  Score=40.41  Aligned_cols=100  Identities=18%  Similarity=0.147  Sum_probs=69.2

Q ss_pred             eEeCCCCeeeccCCCCCcceEEEEecCCCC-CcEEEE--EEEEcCCCcCCCC-CCCceEEEEEEECE-EEEEEcCC-cEE
Q 022278           72 ALITPESHVLSPLPEWTNTLGAYLITPAMG-SHFVMY--LANMQENARSALP-PHDVERFIFVVQGS-AMLTNASG-VSS  145 (300)
Q Consensus        72 av~~~e~~~~~~~p~~~~~~~~~L~sp~~g-~~f~~~--lv~l~PG~~~~~~-~h~gEEf~yVLeG~-v~l~v~gg-~~~  145 (300)
                      .+++.+++...+=.+-.|.+-.+.+.|..+ +.|...  +.++...  .+.. -.+.++.+.+|+|+ ++|.. +| ...
T Consensus        12 ~~i~~~d~~~~pWkNGgG~TrEI~~~P~~~~~~F~wRiSiA~V~~~--g~FS~FpG~dR~l~lL~G~gl~L~~-~g~~~~   88 (193)
T 3esg_A           12 SVWRAVDYVRMPWKNGGGSTEEITRDAGTGLEGFGWRLSIADIGES--GGFSSFAGYQRVITVIQGAGMVLTV-DGEEQR   88 (193)
T ss_dssp             EEECGGGCEEEECTTSSEEEEEEEECCCBTTTBCSEEEEEEEECSS--EECCCCTTCEEEEEEEESSCEEEEE-TTSCCE
T ss_pred             EEecHHHCCcccccCCCeEEEEEEEcCCCcCCCceEEEEEEEEcCC--CCCCCCCCceEEEEEEcCCcEEEEe-CCCccE
Confidence            468888877653222235566666776543 445444  5566542  2222 46889999999997 99998 66 568


Q ss_pred             EeccCcEEEeCCCCceEEee-CCeEEEEEE
Q 022278          146 KLMVDSYTYLPPNFAHSLRA-EGSATLVVF  174 (300)
Q Consensus       146 ~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v  174 (300)
                      .|++.+.+.|+.+.+-.-+. +.+++-+-+
T Consensus        89 ~L~~~~p~~F~G~~~v~a~L~~G~v~DfNl  118 (193)
T 3esg_A           89 GLLPLQPFAFRGDSQVSCRLITGPIRDFNL  118 (193)
T ss_dssp             EECBTCCEEEETTSCEEEEESSSCEEEEEE
T ss_pred             ecCCCCCEEeCCCCeEEEEECCCCEEEEEE
Confidence            89999999999998887776 677766655

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=94.03  E-value=0.28  Score=44.57  Aligned_cols=82  Identities=12%  Similarity=0.225  Sum_probs=62.5

Q ss_pred             EEEeeCCCCCc-ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEc--cC--------CcEEEeCCCCc
Q 022278          208 LRKLLPQAVPF-DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPV--QA--------GDVLWMAPFVP  276 (300)
Q Consensus       208 ~~~l~p~~~~~-~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v--~~--------GD~i~~~~~~~  276 (300)
                      +..+.|+..++ -+.++++.|++|.+... .....|=++..|.|++.+..+|+.++.  +.        .|.+|++.|..
T Consensus        16 ~~~itp~~a~~~y~~f~~~~L~~Ge~~~~-~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~   94 (270)
T 2qjv_A           16 IQHISPQNAGWEYVGFDVWQLXAGESITL-PSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTE   94 (270)
T ss_dssp             EEEECHHHHTSSSCEEEEEEECTTCEEEE-CCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCC
T ss_pred             EEEeCCCCCCcEEeEEEEEEecCCCEEEe-cCCCcEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEECCCCE
Confidence            44455665455 47899999999998765 455667778999999999999998876  22        59999999997


Q ss_pred             eeEEecCCccEEEEEE
Q 022278          277 QWYAALGKTRTRYLLY  292 (300)
Q Consensus       277 H~~~n~G~e~~~fi~~  292 (300)
                      =.+.+..  +++|.+.
T Consensus        95 v~i~a~~--~~~~~v~  108 (270)
T 2qjv_A           95 AXVTAET--DLELAVC  108 (270)
T ss_dssp             EEEEESS--SEEEEEE
T ss_pred             EEEEecC--CceEEEE
Confidence            7777765  4665543

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=94.02  E-value=0.48  Score=40.18  Aligned_cols=66  Identities=9%  Similarity=-0.016  Sum_probs=53.7

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEeeE-EEEe---CCEEEE------ccCCcE--EEeCCCCceeEEec-C
Q 022278          217 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQG-IYRL---GDSWYP------VQAGDV--LWMAPFVPQWYAAL-G  283 (300)
Q Consensus       217 ~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G-~~~~---~g~~~~------v~~GD~--i~~~~~~~H~~~n~-G  283 (300)
                      +.....-.+.|.+|..... |...-.|+.|...|.+ .+.+   ||+...      +.+|+.  +++|+|+.|+.+++ |
T Consensus        46 R~~~T~IYfLL~~g~~S~~-HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~~g  124 (170)
T 1yud_A           46 RQLWSSIYFLLRTGEVSHF-HRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQD  124 (170)
T ss_dssp             SBSCEEEEEEEETTCCEEE-EECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTEESCEEECTTCEEEEEESSS
T ss_pred             CccceEEEEEECCCCCCee-EEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccCceeEEEECCCCEEEEEECCC
Confidence            4445566788999998766 5556668999999998 6666   787777      889999  99999999999998 5

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=93.97  E-value=0.059  Score=49.60  Aligned_cols=70  Identities=6%  Similarity=-0.015  Sum_probs=54.9

Q ss_pred             eEEEEEEecCCcccCcceeeccc-----------eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEE
Q 022278          220 FNIHIMDFQPGDFLNVKEVHYNQ-----------HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR  288 (300)
Q Consensus       220 ~~~~~~tl~PG~~~p~~~~H~~e-----------h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  288 (300)
                      ..+|. .+.||+.|.. |..+.+           |+=.+..-...+.+||+.+..++|.+.|+....+|+..|.|+++=.
T Consensus        92 ~~vRl-rL~PG~~I~~-HrD~~~l~~~~~~~~RlHIPL~Tnp~~~f~vdg~~~~m~~GE~w~~d~~~~H~v~N~g~~~RI  169 (290)
T 1e5r_A           92 QMARS-RNLKNAIVIP-HRDFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQ  169 (290)
T ss_dssp             EEEEE-EEEESEEEEE-ECCC--------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSCCC
T ss_pred             heEEE-EeCCCCEeeC-ccCccccccccCCceEEEeeEecCCCcEEEECCEEEecCCCCEEEEcCCCeeEEEcCCCCCeE
Confidence            45666 9999999986 454423           3444567778888999999999999999999999999999996644


Q ss_pred             EEE
Q 022278          289 YLL  291 (300)
Q Consensus       289 fi~  291 (300)
                      .|+
T Consensus       170 hLv  172 (290)
T 1e5r_A          170 SLC  172 (290)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=93.71  E-value=0.15  Score=43.67  Aligned_cols=25  Identities=16%  Similarity=0.208  Sum_probs=22.9

Q ss_pred             EEEccCCcEEEeCCCCceeEEecCC
Q 022278          260 WYPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       260 ~~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      ...++|||++|+|+|-.|+..|.++
T Consensus       202 ~~~l~pGD~LyiP~gW~H~V~~l~~  226 (235)
T 4gjz_A          202 SCILSPGEILFIPVKYWHYVRALDL  226 (235)
T ss_dssp             EEEECTTCEEEECTTCEEEEEESSS
T ss_pred             EEEECCCCEEEeCCCCcEEEEECCC
Confidence            5679999999999999999999975

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=93.62  E-value=0.19  Score=39.39  Aligned_cols=61  Identities=18%  Similarity=0.222  Sum_probs=47.2

Q ss_pred             EEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278          110 NMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  173 (300)
Q Consensus       110 ~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~  173 (300)
                      .|.||. ... .-...|..-|++|++++.+ .|  +..+..+|+++.+|++....++-.+++..++
T Consensus        42 Vm~PGe-Y~F-~T~~~E~MevvsG~l~V~L-pG~~eW~~~~aGesF~VpanssF~lkv~~~t~Y~C  104 (106)
T 3eo6_A           42 LLHPGV-YTL-SSEVAETIRVLSGMAYYHA-EGANDVQELHAGDSMVIPANQSYRLEVMEPLDYLL  104 (106)
T ss_dssp             EECSEE-EEE-CCSSCEEEEEEEEEEEEEC-TTCSSCEEEETTCEEEECSSSCEEEEEEEEEEEEE
T ss_pred             EEeeeE-EEe-cCCCcEEEEEEEeEEEEEC-CCCccCEEECCCCEEEECCCCcEEEEECceEEEEE
Confidence            456773 222 2345788899999999999 54  5799999999999999999999766666555

>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}

Probab=93.57  E-value=0.0081  Score=52.43  Aligned_cols=46  Identities=13%  Similarity=0.087  Sum_probs=40.7

Q ss_pred             CCCccCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           23 DGGFCSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        23 ~~~~~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      .-|+ |+.+||+++|+|++.+|++|+|...|+.     |+++||++...+..
T Consensus        28 ~~g~-t~~~lA~~~gis~~~i~~~~~g~~~p~~~~l~~ia~~l~v~~~~l~~   78 (236)
T 3bdn_A           28 ELGL-SQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP   78 (236)
T ss_dssp             TTTC-CSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTTTSCGGGTCH
T ss_pred             HcCC-CHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHhhc
Confidence            3455 9999999999999999999999999976     89999999888764

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=93.56  E-value=0.27  Score=42.68  Aligned_cols=75  Identities=8%  Similarity=0.042  Sum_probs=57.7

Q ss_pred             EEEEEEEcCCCcCCCCC---CCceEEEEEE--EC-EEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEEee
Q 022278          105 VMYLANMQENARSALPP---HDVERFIFVV--QG-SAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERR  177 (300)
Q Consensus       105 ~~~lv~l~PG~~~~~~~---h~gEEf~yVL--eG-~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~  177 (300)
                      ......|.||+...+|.   ...=.+-+.|  -. .+.+.+ ||+++..++|++++|.-...|...| ....|++.+...
T Consensus       103 ~a~fs~L~pG~~I~pH~g~~n~~lR~HL~L~~p~~~~~i~V-~~~~~~w~eGe~~~fDds~~Hev~N~~d~~RvvL~~D~  181 (197)
T 3rcq_A          103 QIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRC-ANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDV  181 (197)
T ss_dssp             EEEEEEECTTEEEEEECCSCTTEEEEEEEEECCSSSEEEEE-TTEEECCCBTCEEEECTTSCEEEEECSSSCEEEEEEEE
T ss_pred             eEEEEEeCCCCCcCCeeCCCCCeEEEEEEEEeCCCCcEEEE-CCEEEEeeCCcEEEEcCCeEEEEEECCCCCEEEEEEee
Confidence            56778899998776652   2333333333  33 688999 9999999999999999999999999 556888888777


Q ss_pred             ccc
Q 022278          178 YAS  180 (300)
Q Consensus       178 y~~  180 (300)
                      ..|
T Consensus       182 ~rP  184 (197)
T 3rcq_A          182 WHP  184 (197)
T ss_dssp             ECT
T ss_pred             eCC
Confidence            766

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=93.45  E-value=0.23  Score=48.18  Aligned_cols=64  Identities=13%  Similarity=0.253  Sum_probs=48.9

Q ss_pred             CcEEEEEEEEc--CCCcCCCCCCCceEEEEEEECEEEEEEcCCc-E--EEeccCcEEEeCCCCceEEeeC
Q 022278          102 SHFVMYLANMQ--ENARSALPPHDVERFIFVVQGSAMLTNASGV-S--SKLMVDSYTYLPPNFAHSLRAE  166 (300)
Q Consensus       102 ~~f~~~lv~l~--PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~-~--~~L~~Gds~yfpa~~~H~~~N~  166 (300)
                      ..|....+++.  +++........+-..+.|++|++++.. ++. +  ..|++||++++|++..-.++++
T Consensus       355 ~eF~v~~~~~~~~~~~~~~~~~~~~~~illv~~G~g~i~~-~~~~~~~~~l~~G~~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          355 AEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQI-TGDDSTKQKIDTGYVFFVAPGSSIELTAD  423 (440)
T ss_dssp             SSCEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEE-TTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred             CeEEEEEEEecCCCCceeEEecCCCcEEEEEEeCeEEEEe-CCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence            47888888887  332222224567889999999999998 654 4  7999999999999977777763

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=93.42  E-value=0.35  Score=41.13  Aligned_cols=151  Identities=12%  Similarity=0.011  Sum_probs=86.8

Q ss_pred             EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCc-EEEeccCcEEE-----eCCCCceEEeeCCeEEEEEEEeec-cc
Q 022278          108 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGV-SSKLMVDSYTY-----LPPNFAHSLRAEGSATLVVFERRY-AS  180 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~-~~~L~~Gds~y-----fpa~~~H~~~N~~~a~vl~v~~~y-~~  180 (300)
                      ..++++|..--.....++.+++|++|.+.+.. +++ ...+.+||++=     .......++...++++++.+.+.- ..
T Consensus        32 ~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-~~~~~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~  110 (246)
T 3of1_A           32 EKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-NDNKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRK  110 (246)
T ss_dssp             EEEECTTCEEECTTCCCCEEEEEEECCEEEES-TTSCCEEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEHHHHHH
T ss_pred             eEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-CCEEEEecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEhHHHHH
Confidence            45566665443334567899999999999997 554 57899999874     122233455556778887774322 21


Q ss_pred             cCCCCcceeecc----CCCCCCcccCCceeEEEEeeCCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEE
Q 022278          181 LENHITEQIVGS----TDKQPLLETPGEVFQLRKLLPQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR  255 (300)
Q Consensus       181 ~~g~~p~~~~~~----~~d~~~~~~~g~~~~~~~l~p~~~~-~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~  255 (300)
                      +-...|......    ...++.  +..       +.+.... -...+....+++|..+= .+-....+.|+|++|+..+.
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~~--f~~-------l~~~~l~~l~~~~~~~~~~~g~~i~-~~g~~~~~~y~I~~G~v~v~  180 (246)
T 3of1_A          111 ILLGSSFKKRLMYDDLLKSMPV--LKS-------LTTYDRAKLADALDTKIYQPGETII-REGDQGENFYLIEYGAVDVS  180 (246)
T ss_dssp             TTTTTTSHHHHHSHHHHHHCGG--GTT-------CCHHHHHHHHHTCEEEEECTTCEEE-CTTSBCCEEEEEEECEEEEE
T ss_pred             HHHHhHHHHHHHHHHHHhhChh--hhc-------CCHHHHHHHHHhhheEEeCCCCEEE-eCCCcCCEEEEEEecEEEEE
Confidence            111111100000    000000  000       0011111 12334567788888873 24444557899999999988


Q ss_pred             eCC--EEEEccCCcEE
Q 022278          256 LGD--SWYPVQAGDVL  269 (300)
Q Consensus       256 ~~g--~~~~v~~GD~i  269 (300)
                      ..+  ....+.+||++
T Consensus       181 ~~~~~~~~~l~~g~~f  196 (246)
T 3of1_A          181 KKGQGVINKLKDHDYF  196 (246)
T ss_dssp             ETTTEEEEEEETTCEE
T ss_pred             EcCCceEEEcCCCCcc
Confidence            776  46788999975

>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A

Probab=92.96  E-value=0.004  Score=49.93  Aligned_cols=39  Identities=5%  Similarity=-0.012  Sum_probs=32.7

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh----hhcccCCccee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRSV   66 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs~   66 (300)
                      ||+++|++.|+|++.+|+.|+|...|+.    ++.+++.+...
T Consensus        86 sq~~la~~~g~s~~~i~~~E~g~~~p~~~~~~l~~~~~~~p~~  128 (133)
T 3o9x_A           86 TQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVLDKHPEL  128 (133)
T ss_dssp             CHHHHHHHHCSCTTHHHHHHHTSSCCCHHHHHHHHHHHHCGGG
T ss_pred             CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHccCHHH
Confidence            7899999999999999999999999986    66666655443

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=92.64  E-value=0.068  Score=49.16  Aligned_cols=74  Identities=12%  Similarity=-0.040  Sum_probs=52.1

Q ss_pred             cEEEEEEEEcCCCcCCCCCCC---c------e--EEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEE
Q 022278          103 HFVMYLANMQENARSALPPHD---V------E--RFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSAT  170 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~---g------E--Ef~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~  170 (300)
                      .+....+.|.||+.-.+|...   +      -  +.-.+..=.+.+.+ +|+.+.+.+|+..||..+.+|...| ....|
T Consensus        90 ~l~~vRlrL~PG~~I~~HrD~~~l~~~~~~~~RlHIPL~Tnp~~~f~v-dg~~~~m~~GE~w~~d~~~~H~v~N~g~~~R  168 (290)
T 1e5r_A           90 HLQMARSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFHSN-EDTVIHMRPGEIWFLDAATVHSAVNFSEISR  168 (290)
T ss_dssp             SEEEEEEEEEESEEEEEECCC--------CBCCEEEECSCCTTEEEEE-TTEEECCCTTEEEECCTTSCEEEEESSSSCC
T ss_pred             hhheEEEEeCCCCEeeCccCccccccccCCceEEEeeEecCCCcEEEE-CCEEEecCCCCEEEEcCCCeeEEEcCCCCCe
Confidence            345565589999877665222   1      1  12233344566777 9999999999999999999999999 55678


Q ss_pred             EEEEEee
Q 022278          171 LVVFERR  177 (300)
Q Consensus       171 vl~v~~~  177 (300)
                      +..|.--
T Consensus       169 IhLv~D~  175 (290)
T 1e5r_A          169 QSLCVDF  175 (290)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEe
Confidence            7776544

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=92.11  E-value=1.1  Score=40.59  Aligned_cols=77  Identities=13%  Similarity=0.125  Sum_probs=55.1

Q ss_pred             EEEee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCce-eEEecCCc
Q 022278          208 LRKLL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ-WYAALGKT  285 (300)
Q Consensus       208 ~~~l~-p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H-~~~n~G~e  285 (300)
                      .|.|. +++.+...   ++.|.||-..|. --|...-++|||+|+..  +||  ..+.+|++.|+|.|+.= ..+-.|++
T Consensus        81 ~RlLs~~d~GaSTl---~V~fpp~~~~P~-Gi~~ad~E~fVL~G~i~--~G~--~~l~~h~Y~f~PaGV~~~~~kv~~~~  152 (303)
T 2qdr_A           81 RRLLTWHDSGASTS---RVVLPPKFEAPS-GIFTADLEIFVIKGAIQ--LGE--WQLNKHSYSFIPAGVRIGSWKVLGGE  152 (303)
T ss_dssp             EEEEEECTTSCEEE---EEEECTTCEECC-BEESSCEEEEEEESEEE--ETT--EEECTTEEEEECTTCCBCCEEEETTS
T ss_pred             eeecccCCCCcceE---EEEecCCCCCCC-cccccceEEEEEEeEEE--eCC--EEecCCceEEecCCCccCceeecCCC
Confidence            34443 44444443   567899999986 56665555999998755  455  46789999999999976 55566888


Q ss_pred             cEEEEEE
Q 022278          286 RTRYLLY  292 (300)
Q Consensus       286 ~~~fi~~  292 (300)
                      +.+-|.|
T Consensus       153 g~~iL~f  159 (303)
T 2qdr_A          153 EAEILWM  159 (303)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            8877777

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=92.01  E-value=0.36  Score=44.74  Aligned_cols=60  Identities=17%  Similarity=0.266  Sum_probs=46.3

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCC-ceEEe
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNF-AHSLR  164 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~-~H~~~  164 (300)
                      ..|....+++.++...  ...++-..+.|++|+.++.. +++++.|++||++++|++. .-.++
T Consensus       249 ~~F~~~~~~~~~~~~~--~~~~~~~il~v~~G~~~l~~-~~~~~~l~~G~~~~vpa~~~~~~i~  309 (319)
T 1qwr_A          249 EYFSVYKWDINGEAEM--AQDESFLICSVIEGSGLLKY-EDKTCPLKKGDHFILPAQMPDFTIK  309 (319)
T ss_dssp             SSCEEEEEEEEEEEEE--CCCSSCEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTCCCEEEE
T ss_pred             CEEEEEEEEECCceEE--ccCCccEEEEEEcCeEEEEE-CCEEEEEcCCcEEEEeCCCceEEEE
Confidence            4677777777644221  23466788999999999998 8889999999999999987 44554

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=91.98  E-value=0.52  Score=36.09  Aligned_cols=61  Identities=13%  Similarity=0.177  Sum_probs=49.8

Q ss_pred             ecCCcccCcceeeccceEEEEEEeeEEEEeCCE--EEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          227 FQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS--WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       227 l~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +.||.+.   =.-...|.+-|++|+..+.+.|+  |...++||...+|++..=.++..  ++..|+|.
T Consensus        30 m~pGeyt---F~T~~~E~M~vvsG~~~V~lpg~~ew~~~~aGesF~Vpans~F~l~v~--~~~~YlC~   92 (94)
T 2oyz_A           30 MLPGEYT---FGTQAPERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVK--DATAYLCE   92 (94)
T ss_dssp             ECSEEEE---EEESSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEES--SCEEEEEE
T ss_pred             EeceEEE---EcCCCeEEEEEEEeEEEEEcCCCCcCEEECCCCEEEECCCCEEEEEEc--ccEeEEEE
Confidence            3577642   22345578999999999999985  99999999999999988888874  88999985

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=91.73  E-value=0.23  Score=36.68  Aligned_cols=38  Identities=16%  Similarity=0.230  Sum_probs=32.0

Q ss_pred             cceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEe
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL  256 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~  256 (300)
                      -++.+.+..|.||+-.+. |.|... ++.||++|++.+-+
T Consensus        34 lgls~~r~~l~~gg~~~P-H~hprA~ei~~V~~G~~~v~~   72 (79)
T 1dgw_X           34 LDILLNCLQMNEGALFVP-HYNSRATVILVANEGRAEVEL   72 (79)
T ss_dssp             TTEEEEEEEECTTCEEEE-EEESSCEEEEEEEESCEEEEE
T ss_pred             CCcceEEEEEcCCcCcCC-ccCCCCcEEEEEEeceEEEEE
Confidence            478999999999999986 777765 77899999997754

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=91.68  E-value=0.59  Score=37.74  Aligned_cols=59  Identities=17%  Similarity=0.206  Sum_probs=43.8

Q ss_pred             CCcccCcc---eee--ccceEEEEEEeeEEEE-eCC-------EEEEccCCcEEEeCCCCceeEEecCCccEEE
Q 022278          229 PGDFLNVK---EVH--YNQHGLLLLEGQGIYR-LGD-------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRY  289 (300)
Q Consensus       229 PG~~~p~~---~~H--~~eh~~~iL~G~G~~~-~~g-------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~f  289 (300)
                      |++....|   -+|  .| .-+-||+|+..|+ +++       +..-..+|++.+++|...|-++...+ +++|
T Consensus        23 P~~ll~~H~~~~Tk~Gtw-g~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsd-d~~f   94 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVY-PRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTD-DTYF   94 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEE-EEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESST-TCEE
T ss_pred             hHHHHhhccccCCCCCEE-EEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCC-CEEE
Confidence            66666654   233  34 4789999999888 333       55678999999999999999998655 4444

>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A

Probab=91.67  E-value=0.0091  Score=50.36  Aligned_cols=41  Identities=2%  Similarity=-0.208  Sum_probs=36.8

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh----hhcccCCcceeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRSVYK   68 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs~f~   68 (300)
                      |+.+||+++|+|++.+|+.|++...|..    |++++|++...+.
T Consensus        22 tq~elA~~~Gis~~~i~~~e~g~~~p~~~l~~ia~~~~v~~~~l~   66 (189)
T 2fjr_A           22 QKIQLANHFDIASSSLSNRYTRGAISYDFAAHCALETGANLQWLL   66 (189)
T ss_dssp             SHHHHHHHTTCCHHHHHHHHHSSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred             CHHHHHHHhCcCHHHHHHHHhCCCCCHHHHHHHHHHHCCCHHHHh
Confidence            9999999999999999999999999832    8899999887765

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=91.52  E-value=0.36  Score=46.08  Aligned_cols=61  Identities=13%  Similarity=0.223  Sum_probs=47.0

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCC-ceEEee
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNF-AHSLRA  165 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~-~H~~~N  165 (300)
                      ..|....+++.++. .. ...++-..+.|++|++++.. ++++..|++||++++|++. .-.++.
T Consensus       322 ~~F~v~~~~l~~~~-~~-~~~~~~~il~v~~G~~~l~~-~~~~~~l~~G~~~fvpa~~~~~~i~g  383 (394)
T 2wfp_A          322 DDFAFSLHDLALQE-TS-IGQHSAAILFCVEGEAVLRK-DEQRLVLKPGESAFIGADESPVNASG  383 (394)
T ss_dssp             SSCEEEEEECCSSC-EE-ECCSSCEEEEEEEEEEEEEE-TTEEEEECTTCEEEECGGGCCEEEEE
T ss_pred             CEEEEEEEEEcCCe-EE-ecCCCcEEEEEEeceEEEEE-CCeEEEEccCcEEEEeCCCceEEEEe
Confidence            46777788876542 11 24566789999999999998 8888999999999999984 555553

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=91.39  E-value=1.4  Score=42.96  Aligned_cols=56  Identities=9%  Similarity=0.033  Sum_probs=48.7

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEee
Q 022278          121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  177 (300)
Q Consensus       121 ~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~  177 (300)
                      ..+||+.+|+-+|++.++- .=-...+++||++.+|.|+.+++.=.+++|.++++.-
T Consensus       175 NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRGi~frv~l~~p~Rgyi~E~~  230 (471)
T 1eyb_A          175 NSDGDFLIVPQKGNLLIYT-EFGKMLVQPNEICVIQRGMRFSIDVFEETRGYILEVY  230 (471)
T ss_dssp             ESSEEEEEEEEESCEEEEE-TTEEEEECTTEEEEECTTCCEEEECSSSEEEEEEEEE
T ss_pred             cCCCCEEEEEEeCCEEEEE-ecccEEeccCCEEEECCccEEEEeeCCCceEEEEEcc
Confidence            5899999999999999997 6556789999999999999999985338998888653

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=91.35  E-value=0.35  Score=36.98  Aligned_cols=35  Identities=11%  Similarity=0.039  Sum_probs=30.2

Q ss_pred             EEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecC
Q 022278          260 WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  296 (300)
Q Consensus       260 ~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~n  296 (300)
                      .-.|++||++++|.|-+=...|..  .|+|++||=-.
T Consensus         7 ~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~tna   41 (93)
T 1dgw_Y            7 AATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGVNA   41 (93)
T ss_dssp             EEEECTTCEEEECTTCCEEEEESS--SEEEEEEEESC
T ss_pred             hceecCCcEEEECCCCceeEEecC--CeEEEEEEecC
Confidence            457999999999999999999985  49999997444

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=91.21  E-value=1.3  Score=37.96  Aligned_cols=63  Identities=11%  Similarity=0.106  Sum_probs=46.2

Q ss_pred             cCCcccCccee--eccceEEEEEEeeEE---EEeC------CEEEEcc----CCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          228 QPGDFLNVKEV--HYNQHGLLLLEGQGI---YRLG------DSWYPVQ----AGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       228 ~PG~~~p~~~~--H~~eh~~~iL~G~G~---~~~~------g~~~~v~----~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      .+|.-=+.|-|  |.+..-+.+++|+..   +.+.      |+|..+.    .+-.+|+|+|+.|+|.+.+++ ..++|
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNY  133 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEE
Confidence            37887777666  677788999999963   3232      2576663    367899999999999999886 44443

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=90.93  E-value=0.88  Score=41.73  Aligned_cols=59  Identities=8%  Similarity=0.224  Sum_probs=45.1

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCce-EEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCc-eEEee
Q 022278          102 SHFVMYLANMQENARSALPPHDVE-RFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLRA  165 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gE-Ef~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~-H~~~N  165 (300)
                      ..|....+++.+...  ... ++- ..+.|++| +++.. ++++..|++||++++|++.. -.++.
T Consensus       228 ~~F~v~~~~~~~~~~--~~~-~~~~~il~v~~G-~~i~~-~~~~~~l~~G~~~~ipa~~~~~~i~g  288 (300)
T 1zx5_A          228 ENFGLEVVDVTGTAE--IKT-GGVMNILYAAEG-YFILR-GKETADLHRGYSCLVPASTDSFTVES  288 (300)
T ss_dssp             SSEEEEEEEEEEEEE--EEC-CSBCEEEEEEES-CEEEE-SSSEEEECTTCEEEECTTCCEEEEEE
T ss_pred             CeEEEEEEEECCceE--Eec-CCceEEEEEccc-EEEEe-CCeEEEEccceEEEEeCCCceEEEEe
Confidence            468888888764221  123 666 78999999 99998 88899999999999999984 55543

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=90.55  E-value=0.8  Score=35.78  Aligned_cols=81  Identities=15%  Similarity=0.183  Sum_probs=58.5

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC--EEEEccCCcEEEeCCCCceeEEe
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAA  281 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n  281 (300)
                      |++..+-+.-.+... -.  +=.+.||.+.   =.-...|.+-|++|...+.+.|  +|...++|+...+|++..=.++.
T Consensus        23 GkV~S~~~~~~dG~~-kT--lGVm~PGeY~---F~T~~~E~MevvsG~l~V~LpG~~eW~~~~aGesF~VpanssF~lkv   96 (106)
T 3eo6_A           23 GRRSERSVILADGSM-HS--LTLLHPGVYT---LSSEVAETIRVLSGMAYYHAEGANDVQELHAGDSMVIPANQSYRLEV   96 (106)
T ss_dssp             TTEEEEEEEETTSCE-EE--EEEECSEEEE---ECCSSCEEEEEEEEEEEEECTTCSSCEEEETTCEEEECSSSCEEEEE
T ss_pred             CeEEEEEEEeCCCCe-EE--EEEEeeeEEE---ecCCCcEEEEEEEeEEEEECCCCccCEEECCCCEEEECCCCcEEEEE
Confidence            455666555333221 11  2233577642   2224457899999999999999  79999999999999999988888


Q ss_pred             cCCccEEEEEE
Q 022278          282 LGKTRTRYLLY  292 (300)
Q Consensus       282 ~G~e~~~fi~~  292 (300)
                      .  ++..|+|.
T Consensus        97 ~--~~t~Y~Cs  105 (106)
T 3eo6_A           97 M--EPLDYLLS  105 (106)
T ss_dssp             E--EEEEEEEE
T ss_pred             C--ceEEEEEc
Confidence            5  89999996

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=90.03  E-value=1.7  Score=37.11  Aligned_cols=62  Identities=11%  Similarity=0.212  Sum_probs=45.1

Q ss_pred             CCcccCccee--eccceEEEEEEeeEE-EEeC--------CEEEEcc--C--CcEEEeCCCCceeEEecCCccEEEEE
Q 022278          229 PGDFLNVKEV--HYNQHGLLLLEGQGI-YRLG--------DSWYPVQ--A--GDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       229 PG~~~p~~~~--H~~eh~~~iL~G~G~-~~~~--------g~~~~v~--~--GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      +|.-=+.|-|  +.+..-+.+++|+.. +.+|        |+|..+.  +  +-.+|+|+|+-|+|.+.+++ ..++|
T Consensus        58 ~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  134 (184)
T 2ixk_A           58 RGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEY-AEFLY  134 (184)
T ss_dssp             TTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCC-EEEEE
Confidence            7887777656  567778899999862 3222        2576663  2  57899999999999999886 44443

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=89.97  E-value=0.28  Score=36.27  Aligned_cols=38  Identities=13%  Similarity=0.064  Sum_probs=32.8

Q ss_pred             CcEEEEEEEEcCCCcCCCCC-CCceEEEEEEECEEEEEE
Q 022278          102 SHFVMYLANMQENARSALPP-HDVERFIFVVQGSAMLTN  139 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~-h~gEEf~yVLeG~v~l~v  139 (300)
                      -.+.+..+.+.||+...+|. ...-|++||++|++.+.+
T Consensus        34 lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~   72 (79)
T 1dgw_X           34 LDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVEL   72 (79)
T ss_dssp             TTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEE
T ss_pred             CCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEE
Confidence            46888999999999888884 457899999999999887

>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A

Probab=89.74  E-value=0.036  Score=46.46  Aligned_cols=41  Identities=7%  Similarity=-0.086  Sum_probs=37.2

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK   68 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~   68 (300)
                      |.++||+++|+|+-|+.++++|+.+||.     |.++||++.....
T Consensus        28 Twe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e~~~   73 (156)
T 1dw9_A           28 SFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSIL   73 (156)
T ss_dssp             CHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred             CHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHH
Confidence            6799999999999999999999999998     8899998877644

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=89.65  E-value=0.79  Score=45.00  Aligned_cols=58  Identities=16%  Similarity=0.245  Sum_probs=40.4

Q ss_pred             cCCcccCcceeeccceEEEEEEeeE--EEEeCC-------------------------EEEEccCCcEEEeCCCCceeEE
Q 022278          228 QPGDFLNVKEVHYNQHGLLLLEGQG--IYRLGD-------------------------SWYPVQAGDVLWMAPFVPQWYA  280 (300)
Q Consensus       228 ~PG~~~p~~~~H~~eh~~~iL~G~G--~~~~~g-------------------------~~~~v~~GD~i~~~~~~~H~~~  280 (300)
                      .|+++.++ --|...+..+++++.|  ..++-.                         ....++|||++|+|+|..|+..
T Consensus       171 tp~Gs~g~-~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H~~~  249 (489)
T 4diq_A          171 TPPNSQGF-APHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAE  249 (489)
T ss_dssp             ECSSBCCS-CCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEEEEE
T ss_pred             cCCCcccc-cCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCceEEE
Confidence            36665553 3456666677777766  222211                         2578999999999999999999


Q ss_pred             ecCCcc
Q 022278          281 ALGKTR  286 (300)
Q Consensus       281 n~G~e~  286 (300)
                      +.+++.
T Consensus       250 s~~~~~  255 (489)
T 4diq_A          250 CQDGVH  255 (489)
T ss_dssp             BCSSCC
T ss_pred             ecCCCc
Confidence            997643

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=89.51  E-value=2.1  Score=36.97  Aligned_cols=62  Identities=11%  Similarity=0.153  Sum_probs=43.5

Q ss_pred             cCCcccCcceeec---cceEEEEEEeeE-EEEeCC--------EEEEcc----CCcEEEeCCCCceeEEecCCccEEEE
Q 022278          228 QPGDFLNVKEVHY---NQHGLLLLEGQG-IYRLGD--------SWYPVQ----AGDVLWMAPFVPQWYAALGKTRTRYL  290 (300)
Q Consensus       228 ~PG~~~p~~~~H~---~eh~~~iL~G~G-~~~~~g--------~~~~v~----~GD~i~~~~~~~H~~~n~G~e~~~fi  290 (300)
                      .+|.-=+.|-|+.   +..-+.+++|+. .+.+|.        +|..+.    .+-.+|||+|+.|+|.|.++ +..++
T Consensus        73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd-~a~~l  150 (196)
T 1wlt_A           73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALED-SIVIY  150 (196)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSS-EEEEE
T ss_pred             CCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCC-CeEEE
Confidence            4777666644433   567788999988 444442        366544    46889999999999999987 34443

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=89.12  E-value=1.1  Score=38.16  Aligned_cols=55  Identities=20%  Similarity=0.258  Sum_probs=40.6

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEEc-C-------------------------------------CcEEEeccCcEEE
Q 022278          113 ENARSALPPHDVERFIFVVQGSAMLTNA-S-------------------------------------GVSSKLMVDSYTY  154 (300)
Q Consensus       113 PG~~~~~~~h~gEEf~yVLeG~v~l~v~-g-------------------------------------g~~~~L~~Gds~y  154 (300)
                      +|+.+..|....+-+..++.|+=...+- -                                     .-+.+|++||.+|
T Consensus       133 ~gs~t~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~Ly  212 (235)
T 4gjz_A          133 QGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILF  212 (235)
T ss_dssp             TTCEEEEECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTTCEEE
T ss_pred             CCCCceeeeccccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCCCEEE
Confidence            3444444545568899999998777651 0                                     0146899999999


Q ss_pred             eCCCCceEEeeCC
Q 022278          155 LPPNFAHSLRAEG  167 (300)
Q Consensus       155 fpa~~~H~~~N~~  167 (300)
                      +|++--|.++|.+
T Consensus       213 iP~gW~H~V~~l~  225 (235)
T 4gjz_A          213 IPVKYWHYVRALD  225 (235)
T ss_dssp             ECTTCEEEEEESS
T ss_pred             eCCCCcEEEEECC
Confidence            9999999999943

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=89.11  E-value=1.5  Score=38.21  Aligned_cols=70  Identities=17%  Similarity=0.239  Sum_probs=48.2

Q ss_pred             cCCCcCCCC----CCCceEEEEEEECEE-EEEEcC---C-------cEEEecc--CcEEEeCCCCceEEee-CCeEEE-E
Q 022278          112 QENARSALP----PHDVERFIFVVQGSA-MLTNAS---G-------VSSKLMV--DSYTYLPPNFAHSLRA-EGSATL-V  172 (300)
Q Consensus       112 ~PG~~~~~~----~h~gEEf~yVLeG~v-~l~v~g---g-------~~~~L~~--Gds~yfpa~~~H~~~N-~~~a~v-l  172 (300)
                      .+|---+.|    ++...++++|++|++ .+.+ |   +       ..+.|.+  +-.+|+|+|..|.+.+ .+.|.+ .
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~V-DlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~a~~~Y  156 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIV-DLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPHTIVMY  156 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEEEE-ECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSSEEEEE
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEE-ECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCCEEEEE
Confidence            455444544    346899999999996 3444 3   2       3457876  6899999999999998 444544 5


Q ss_pred             EEEeeccccC
Q 022278          173 VFERRYASLE  182 (300)
Q Consensus       173 ~v~~~y~~~~  182 (300)
                      ++...|.|..
T Consensus       157 ~~s~~Y~p~~  166 (205)
T 3ryk_A          157 KVDEYYSADH  166 (205)
T ss_dssp             EESSCCCTTT
T ss_pred             EcCCCcCCCC
Confidence            5566676643

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=89.08  E-value=0.86  Score=38.00  Aligned_cols=69  Identities=16%  Similarity=0.082  Sum_probs=46.8

Q ss_pred             EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEe-----CCCCceEEeeCCeEEEEEEEe
Q 022278          108 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYL-----PPNFAHSLRAEGSATLVVFER  176 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yf-----pa~~~H~~~N~~~a~vl~v~~  176 (300)
                      ...+.||..--......+.+++|++|.+.+...+|+...+.+||++=.     ......+++..+.++++.+.+
T Consensus        97 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~  170 (202)
T 3bpz_A           97 FEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSV  170 (202)
T ss_dssp             EEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEH
T ss_pred             ceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEH
Confidence            445677754432334557899999999999865677889999998731     112344555677788887754

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=88.98  E-value=1  Score=38.49  Aligned_cols=69  Identities=14%  Similarity=0.187  Sum_probs=47.5

Q ss_pred             cCCCcCCCC-C--CCceEEEEEEECEE-EEEEcCC--------c--EEEecc--CcEEEeCCCCceEEee-CCeEEEEE-
Q 022278          112 QENARSALP-P--HDVERFIFVVQGSA-MLTNASG--------V--SSKLMV--DSYTYLPPNFAHSLRA-EGSATLVV-  173 (300)
Q Consensus       112 ~PG~~~~~~-~--h~gEEf~yVLeG~v-~l~v~gg--------~--~~~L~~--Gds~yfpa~~~H~~~N-~~~a~vl~-  173 (300)
                      .+|---+.| +  +...++++|++|++ .+.+ |.        +  .+.|.+  +..+|+|+|..|.+.+ .+.|.++. 
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~V-D~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  134 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAV-DLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYK  134 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEE-ECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEE-ECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEe
Confidence            355444555 3  67889999999997 5555 32        2  256665  4789999999999998 44555544 


Q ss_pred             EEeecccc
Q 022278          174 FERRYASL  181 (300)
Q Consensus       174 v~~~y~~~  181 (300)
                      ....|.|.
T Consensus       135 ~s~~Y~p~  142 (185)
T 1ep0_A          135 CTELYHPE  142 (185)
T ss_dssp             ESSCCCGG
T ss_pred             cCCccChh
Confidence            45667664

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=88.91  E-value=2.5  Score=36.68  Aligned_cols=58  Identities=12%  Similarity=0.127  Sum_probs=41.9

Q ss_pred             cCCcccCcceeec---cceEEEEEEeeE-EEEeCC--------EEEEcc--C--CcEEEeCCCCceeEEecCCc
Q 022278          228 QPGDFLNVKEVHY---NQHGLLLLEGQG-IYRLGD--------SWYPVQ--A--GDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       228 ~PG~~~p~~~~H~---~eh~~~iL~G~G-~~~~~g--------~~~~v~--~--GD~i~~~~~~~H~~~n~G~e  285 (300)
                      .+|.-=+.|-|..   +..-+.+++|+. .+.+|.        +|..+.  +  +-.+|||+|+-|+|.+.+++
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~  128 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD  128 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC
Confidence            4777766654433   667789999986 344442        366554  3  57899999999999999986

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=88.82  E-value=2.3  Score=39.58  Aligned_cols=30  Identities=10%  Similarity=-0.013  Sum_probs=25.4

Q ss_pred             EEEEccCCcEEEeCCCCceeEEecCCccEE
Q 022278          259 SWYPVQAGDVLWMAPFVPQWYAALGKTRTR  288 (300)
Q Consensus       259 ~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  288 (300)
                      ....++|||++|+|+|..|...+.++++.-
T Consensus       218 ~~~~L~pGD~LyiP~gwwH~v~s~~~~~sl  247 (342)
T 1vrb_A          218 EIVNLTPGTMLYLPRGLWHSTKSDQATLAL  247 (342)
T ss_dssp             EEEEECTTCEEEECTTCEEEEECSSCEEEE
T ss_pred             eEEEECCCcEEEeCCCccEEEEECCCCceE
Confidence            567899999999999999999999754433

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=88.77  E-value=0.82  Score=39.55  Aligned_cols=59  Identities=25%  Similarity=0.461  Sum_probs=43.0

Q ss_pred             CCceEEEEEEECEE-EEEEcCC----------cEEEecc--CcEEEeCCCCceEEee-CCeEEEE-EEEeecccc
Q 022278          122 HDVERFIFVVQGSA-MLTNASG----------VSSKLMV--DSYTYLPPNFAHSLRA-EGSATLV-VFERRYASL  181 (300)
Q Consensus       122 h~gEEf~yVLeG~v-~l~v~gg----------~~~~L~~--Gds~yfpa~~~H~~~N-~~~a~vl-~v~~~y~~~  181 (300)
                      ++...+++|++|++ .+.+ |.          ..+.|.+  ...+|+|+|..|.+.+ .+.+.++ ++...|.|.
T Consensus        87 ~~q~Klv~vv~G~v~dV~V-DlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~a~~ly~~s~~Y~p~  160 (196)
T 1wlt_A           87 KEQGKIIFVPKGRILDVAV-DVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFITHNEYSPP  160 (196)
T ss_dssp             SCCEEEEEEEESEEEEEEE-ECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEEESSCCCGG
T ss_pred             CCCceEEEEeCCEEEEEEE-ECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEEeCCcCChh
Confidence            45789999999999 5555 32          2357775  5889999999999999 5555554 445666664

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=88.69  E-value=1.7  Score=34.24  Aligned_cols=82  Identities=7%  Similarity=-0.006  Sum_probs=58.6

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC--EEEEccCCcEEEeCCCCceeEEe
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAA  281 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n  281 (300)
                      |++..+-+.-.++.. -.  +=.+.||.. ||.=.-...|.+-|++|+..+.+.|  +|...++|+..-+|++..=.++.
T Consensus        24 GkV~S~~~~~~dG~~-kT--lGVm~PGe~-~YtF~T~~~E~MevvsG~l~V~Lpg~~eW~~~~aGesF~VpanssF~lkv   99 (111)
T 3hqx_A           24 GLCISHTVQFEDGTK-KT--LGVILPTEQ-PLTFETHVPERMEIISGECRVKIADSTESELFRAGQSFYVPGNSLFKIET   99 (111)
T ss_dssp             TTEEEEEEECTTSCE-EE--EEEECCCSS-CEEEECSSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECTTCEEEEEC
T ss_pred             CeEEEEEEEeCCCCE-EE--EEEEecccc-ceEEcCCCcEEEEEEEeEEEEEcCCcccCEEeCCCCEEEECCCCcEEEEE
Confidence            455666665444321 12  223458861 1212234456899999999999998  69999999999999998888887


Q ss_pred             cCCccEEEEE
Q 022278          282 LGKTRTRYLL  291 (300)
Q Consensus       282 ~G~e~~~fi~  291 (300)
                        +++..|+|
T Consensus       100 --~~~~~Y~C  107 (111)
T 3hqx_A          100 --DEVLDYVC  107 (111)
T ss_dssp             --SSCEEEEE
T ss_pred             --CcceeEEE
Confidence              48999999

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=88.00  E-value=2.1  Score=37.25  Aligned_cols=60  Identities=18%  Similarity=0.369  Sum_probs=43.1

Q ss_pred             CCceEEEEEEECEE-EEEEcCCc----------EEEeccC--cEEEeCCCCceEEee-CCeEEEE-EEEeeccccC
Q 022278          122 HDVERFIFVVQGSA-MLTNASGV----------SSKLMVD--SYTYLPPNFAHSLRA-EGSATLV-VFERRYASLE  182 (300)
Q Consensus       122 h~gEEf~yVLeG~v-~l~v~gg~----------~~~L~~G--ds~yfpa~~~H~~~N-~~~a~vl-~v~~~y~~~~  182 (300)
                      ++...+++|++|++ .+.+ |.+          .+.|.+.  ..+|+|+|..|.+.+ .+.+.++ ++...|.|..
T Consensus        69 ~~q~Klv~vv~G~v~dV~V-DlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~s~~Y~p~~  143 (205)
T 1oi6_A           69 PGTAKYVYCARGKAMDIVI-DIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYMLSRSYVTQD  143 (205)
T ss_dssp             TCCCEEEEEEESCEEEEEE-CCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEEEESSCCCGGG
T ss_pred             CCCceEEEEeCCEEEEEEE-ECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCCeEEEEecCCccCHhH
Confidence            45789999999997 5666 432          3566664  789999999999998 4445444 4567776643

>1yll_A PA5104, conserved hypothetical protein; structural genomics, beta-BA PSI, protein structure initiative, midwest center for struc genomics; 1.64A {Pseudomonas aeruginosa} SCOP: b.82.1.17

Probab=87.94  E-value=0.7  Score=40.12  Aligned_cols=52  Identities=12%  Similarity=0.054  Sum_probs=39.4

Q ss_pred             CCceEEEEEEECEEEEEEcC-CcEEEeccCcEEEeCCCCce---EEeeCCeEEEEEE
Q 022278          122 HDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAH---SLRAEGSATLVVF  174 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~v~g-g~~~~L~~Gds~yfpa~~~H---~~~N~~~a~vl~v  174 (300)
                      ...--++||++|++++.+ + ++.+.|.+||++.+.....-   .+..+..++++++
T Consensus       138 ~~~~~~v~~l~G~~~v~~-~~~~~~~L~~~d~l~~~~~~~~~~~~~~~~g~~~~~~i  193 (200)
T 1yll_A          138 TASTLLLFAQQDGVAISL-QGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAV  193 (200)
T ss_dssp             CCSEEEEEESSSCEEEEE-TTEEEEEECTTCEEEEESCCSCEEEEEEEEEEEEEEEE
T ss_pred             CCCEEEEEEccCcEEEEc-CCCceeecCCCCEEEEeCCCccceeEeccCCceEEEEE
Confidence            345679999999999998 5 68899999999999776544   3333555666555

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=87.90  E-value=1.4  Score=37.70  Aligned_cols=68  Identities=13%  Similarity=0.188  Sum_probs=46.7

Q ss_pred             CCCcCCCC-C--CCceEEEEEEECEE-EEEEcCC--------c--EEEecc--CcEEEeCCCCceEEee-CCeEEEEE-E
Q 022278          113 ENARSALP-P--HDVERFIFVVQGSA-MLTNASG--------V--SSKLMV--DSYTYLPPNFAHSLRA-EGSATLVV-F  174 (300)
Q Consensus       113 PG~~~~~~-~--h~gEEf~yVLeG~v-~l~v~gg--------~--~~~L~~--Gds~yfpa~~~H~~~N-~~~a~vl~-v  174 (300)
                      +|---+.| +  +....+++|++|++ .+.+ |.        +  .+.|.+  +..+|+|+|..|.+.+ .+.|.++. .
T Consensus        58 ~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~v-D~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~  136 (184)
T 2ixk_A           58 RGVLRGLHYQIRQAQGKLVRATLGEVFDVAV-DLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKT  136 (184)
T ss_dssp             TTBEEEEEEESSSCCCEEEEEEESEEEEEEE-ECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             CCceeeEEeCCCCCcCEEEEEeCCeEEEEEE-ECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCCEEEEEeC
Confidence            55444555 2  57789999999997 5555 32        2  256666  4789999999999998 44555544 4


Q ss_pred             Eeecccc
Q 022278          175 ERRYASL  181 (300)
Q Consensus       175 ~~~y~~~  181 (300)
                      ...|.|.
T Consensus       137 s~~Y~p~  143 (184)
T 2ixk_A          137 TDFWAPE  143 (184)
T ss_dssp             SSCCCGG
T ss_pred             CCccChh
Confidence            6666653

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=87.90  E-value=3.1  Score=35.43  Aligned_cols=57  Identities=11%  Similarity=0.146  Sum_probs=42.0

Q ss_pred             CCcccCcceee---ccceEEEEEEeeEE-EEeC--------CEEEEcc----CCcEEEeCCCCceeEEecCCc
Q 022278          229 PGDFLNVKEVH---YNQHGLLLLEGQGI-YRLG--------DSWYPVQ----AGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       229 PG~~~p~~~~H---~~eh~~~iL~G~G~-~~~~--------g~~~~v~----~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      +|.-=+.|-|+   .+..-+.+++|+.. +.+|        |+|..+.    .+-.+|+|+|+-|+|.+.+++
T Consensus        56 ~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~  128 (183)
T 1dzr_A           56 KNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY  128 (183)
T ss_dssp             TTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE
T ss_pred             CCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC
Confidence            78777765454   56677899999863 3222        3476664    357899999999999999886

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=87.76  E-value=1.1  Score=38.81  Aligned_cols=69  Identities=12%  Similarity=0.155  Sum_probs=51.0

Q ss_pred             cCCCcCCCCCCCceEEEEEEE-CEE-EEEEcCC---------cEEEeccCcEEEeCCCCceEEee-CCeEEEE-EEEeec
Q 022278          112 QENARSALPPHDVERFIFVVQ-GSA-MLTNASG---------VSSKLMVDSYTYLPPNFAHSLRA-EGSATLV-VFERRY  178 (300)
Q Consensus       112 ~PG~~~~~~~h~gEEf~yVLe-G~v-~l~v~gg---------~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl-~v~~~y  178 (300)
                      .+|---+.|.|....+++|++ |++ .+.+ |.         ....|..+-.+|+|+|..|.+.+ .+.|.++ .+...|
T Consensus        68 ~~GvlRGlH~h~q~Klv~~~~~G~v~dV~V-DlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~a~~~y~~s~~Y  146 (197)
T 1nxm_A           68 RKNVLRGLHAEPWDKYISVADGGKVLGTWV-DLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLVNDYW  146 (197)
T ss_dssp             ETTBEEEEEECSSCEEEEECSSCCEEEEEE-ECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEESSCC
T ss_pred             CCCCcceeeecccceEEEEcCCCEEEEEEE-ECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCCeEEEEECCCcc
Confidence            455444566567889999999 995 6666 43         24788899999999999999998 5566665 445566


Q ss_pred             ccc
Q 022278          179 ASL  181 (300)
Q Consensus       179 ~~~  181 (300)
                      .|.
T Consensus       147 ~p~  149 (197)
T 1nxm_A          147 ALE  149 (197)
T ss_dssp             CGG
T ss_pred             Chh
Confidence            554

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=87.69  E-value=1.1  Score=42.34  Aligned_cols=153  Identities=11%  Similarity=0.042  Sum_probs=84.3

Q ss_pred             EEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcE---EEeccCcEEEe-----CCCCceEEeeCCeEEEEEEEee
Q 022278          107 YLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVS---SKLMVDSYTYL-----PPNFAHSLRAEGSATLVVFERR  177 (300)
Q Consensus       107 ~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg~~---~~L~~Gds~yf-----pa~~~H~~~N~~~a~vl~v~~~  177 (300)
                      ....+++|..--.....++.|++|++|.+.+.. .+|+.   ..+.+||++=-     ..-...++...++++++.+.+.
T Consensus       169 ~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~  248 (416)
T 3tnp_B          169 FEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRV  248 (416)
T ss_dssp             EEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHH
T ss_pred             EEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeeh
Confidence            356677776543335677999999999999876 23443   46889997642     2223445555677887777443


Q ss_pred             c-cccCCCCcceeec----cCCCCCCcccCCceeEEEEeeCCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEee
Q 022278          178 Y-ASLENHITEQIVG----STDKQPLLETPGEVFQLRKLLPQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ  251 (300)
Q Consensus       178 y-~~~~g~~p~~~~~----~~~d~~~~~~~g~~~~~~~l~p~~~~-~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~  251 (300)
                      - ..+-...|.....    -...++..  ..       |.+.+.. ....+....+++|..+= .+-..-.+.|+|++|+
T Consensus       249 ~f~~ll~~~~~~~~~~~~~~L~~v~lf--~~-------Ls~~el~~L~~~l~~~~~~~Ge~I~-~eGd~~~~~yiI~sG~  318 (416)
T 3tnp_B          249 TFRRIIVKNNAKKRKMYESFIESLPFL--KS-------LEVSERLKVVDVIGTKVYNDGEQII-AQGDLADSFFIVESGE  318 (416)
T ss_dssp             HHHHHHHHHHHHHSSSSSSSGGGCGGG--TT-------CCHHHHHHHHHHCEEEEECTTCEEE-CTTSCCCEEEEEEEEE
T ss_pred             hhhhhhhcchhHHHHHHHHHHhhchHh--hc-------CCHHHHHHHHhhceEEEECCCCEEE-eCCCcCCEEEEEEeCE
Confidence            2 1110000110000    00001000  00       1111111 12334566788888773 3444556789999999


Q ss_pred             EEEEeCCE------------EEEccCCcEE
Q 022278          252 GIYRLGDS------------WYPVQAGDVL  269 (300)
Q Consensus       252 G~~~~~g~------------~~~v~~GD~i  269 (300)
                      ..+...+.            ...+.+||++
T Consensus       319 v~v~~~~~~~~~~~~g~~~~l~~l~~G~~f  348 (416)
T 3tnp_B          319 VKITMKRKGKSEVEENGAVEIARCFRGQYF  348 (416)
T ss_dssp             EEEECC------------CEEEEECTTCEE
T ss_pred             EEEEEecCCcccccCCceeEEEEeCCCCEe
Confidence            99885532            4677899975

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=87.66  E-value=3.6  Score=36.29  Aligned_cols=58  Identities=10%  Similarity=0.130  Sum_probs=42.1

Q ss_pred             cCCcccCcceeec---cceEEEEEEeeE-EEEeCC--------EEEEcc--C--CcEEEeCCCCceeEEecCCc
Q 022278          228 QPGDFLNVKEVHY---NQHGLLLLEGQG-IYRLGD--------SWYPVQ--A--GDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       228 ~PG~~~p~~~~H~---~eh~~~iL~G~G-~~~~~g--------~~~~v~--~--GD~i~~~~~~~H~~~n~G~e  285 (300)
                      .+|.-=+.|-|+.   +..-+.+++|+. .+.+|.        +|..+.  +  +-.+|||+|+.|+|.|.+++
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~  147 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN  147 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC
Confidence            4777666654433   667789999996 444443        366553  3  57899999999999999986

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=87.14  E-value=2.5  Score=37.27  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=42.8

Q ss_pred             CCceEEEEEEECEE-EEEEcCC----------cEEEeccC--cEEEeCCCCceEEee-CCeEEE-EEEEeecccc
Q 022278          122 HDVERFIFVVQGSA-MLTNASG----------VSSKLMVD--SYTYLPPNFAHSLRA-EGSATL-VVFERRYASL  181 (300)
Q Consensus       122 h~gEEf~yVLeG~v-~l~v~gg----------~~~~L~~G--ds~yfpa~~~H~~~N-~~~a~v-l~v~~~y~~~  181 (300)
                      ++...+++|++|++ .+.+ |.          ..+.|.+.  ..+|+|+|..|.+.+ .+.+.+ .++...|.|.
T Consensus        88 ~~q~KlV~vv~G~v~dV~V-DlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~vly~~s~~Y~p~  161 (225)
T 1upi_A           88 PSQAKYVTCVSGSVFDVVV-DIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAEYNPQ  161 (225)
T ss_dssp             TCCCEEEEEEESEEEEEEE-CCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEEESSCCCTT
T ss_pred             CCcceEEEEeCCeEEEEEE-ECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCCEEEEEecCCccCHH
Confidence            45789999999997 5666 43          23566664  789999999999998 444544 4466777664

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}

Probab=86.32  E-value=0.34  Score=46.09  Aligned_cols=28  Identities=7%  Similarity=-0.082  Sum_probs=24.0

Q ss_pred             CCEEEEccCCcEEEeCCCCceeEEecCC
Q 022278          257 GDSWYPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       257 ~g~~~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      ..-...=++||+||+|+|++|+..|..+
T Consensus       291 ~~~~~~Q~~GeavfiPaG~~HQV~Nl~~  318 (392)
T 2ypd_A          291 RTCTLIQFLGDAIVLPAGALHQVQNFHS  318 (392)
T ss_dssp             CCEEEEEETTCEEEECTTCEEEEEESSE
T ss_pred             eeEEEEEcCCCEEEecCCCHHHHhcccc
Confidence            4455666899999999999999999975

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=86.11  E-value=1.9  Score=40.10  Aligned_cols=66  Identities=20%  Similarity=0.228  Sum_probs=46.9

Q ss_pred             EEcC-CCcCCCCCCCceEEEEEEECEEEEEEc-C-------------------------------------CcEEEeccC
Q 022278          110 NMQE-NARSALPPHDVERFIFVVQGSAMLTNA-S-------------------------------------GVSSKLMVD  150 (300)
Q Consensus       110 ~l~P-G~~~~~~~h~gEEf~yVLeG~v~l~v~-g-------------------------------------g~~~~L~~G  150 (300)
                      -+.| |+.+..|....+-|+..+.|+=.+.+- .                                     ..+.+|++|
T Consensus       146 ~~gp~g~~~~~H~D~~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~pG  225 (342)
T 1vrb_A          146 YAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPG  225 (342)
T ss_dssp             EEECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTT
T ss_pred             EEeCCCCCCCCeECChhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEECCC
Confidence            3444 556666655667899999998666652 0                                     135699999


Q ss_pred             cEEEeCCCCceEEeeC--CeEEEEEEE
Q 022278          151 SYTYLPPNFAHSLRAE--GSATLVVFE  175 (300)
Q Consensus       151 ds~yfpa~~~H~~~N~--~~a~vl~v~  175 (300)
                      |.+|+|++-.|..++.  +.+-=+.+.
T Consensus       226 D~LyiP~gwwH~v~s~~~~~slsvsi~  252 (342)
T 1vrb_A          226 TMLYLPRGLWHSTKSDQATLALNITFG  252 (342)
T ss_dssp             CEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred             cEEEeCCCccEEEEECCCCceEEEEEC
Confidence            9999999999999984  344444444

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=85.44  E-value=5.8  Score=34.43  Aligned_cols=66  Identities=9%  Similarity=0.078  Sum_probs=45.6

Q ss_pred             EEEecCCcccCcceee---ccceEEEEEEeeE-EEEeC--------CEEEE--cc--CCcEEEeCCCCceeEEecCCccE
Q 022278          224 IMDFQPGDFLNVKEVH---YNQHGLLLLEGQG-IYRLG--------DSWYP--VQ--AGDVLWMAPFVPQWYAALGKTRT  287 (300)
Q Consensus       224 ~~tl~PG~~~p~~~~H---~~eh~~~iL~G~G-~~~~~--------g~~~~--v~--~GD~i~~~~~~~H~~~n~G~e~~  287 (300)
                      .++..+|.-=+.|-|.   .+..-+.+++|+. .+.+|        |+|..  +.  .+-.+|||+|+-|+|.|.++. .
T Consensus        74 S~S~~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~-a  152 (205)
T 3ryk_A           74 SYSAEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH-T  152 (205)
T ss_dssp             EEESSTTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS-E
T ss_pred             EEeCCCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC-E
Confidence            3444688887775554   3667789999996 22232        34544  44  367999999999999999975 4


Q ss_pred             EEE
Q 022278          288 RYL  290 (300)
Q Consensus       288 ~fi  290 (300)
                      .++
T Consensus       153 ~~~  155 (205)
T 3ryk_A          153 IVM  155 (205)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=85.24  E-value=2.8  Score=36.73  Aligned_cols=69  Identities=17%  Similarity=0.245  Sum_probs=46.7

Q ss_pred             cCCCcCCCC----CCCceEEEEEEECEE-EEEEcCC----------cEEEeccC--cEEEeCCCCceEEee-CCeEEEE-
Q 022278          112 QENARSALP----PHDVERFIFVVQGSA-MLTNASG----------VSSKLMVD--SYTYLPPNFAHSLRA-EGSATLV-  172 (300)
Q Consensus       112 ~PG~~~~~~----~h~gEEf~yVLeG~v-~l~v~gg----------~~~~L~~G--ds~yfpa~~~H~~~N-~~~a~vl-  172 (300)
                      .+|---+.|    ++....+++|++|++ .+.+ |.          ..+.|.+.  ..+|+|+|..|.+.+ .+.+.++ 
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~V-DlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~~ly  141 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVV-DLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCY  141 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEE-ECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEE-ECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCCeEEEE
Confidence            355433444    345789999999997 5555 32          23567664  689999999999998 4445444 


Q ss_pred             EEEeecccc
Q 022278          173 VFERRYASL  181 (300)
Q Consensus       173 ~v~~~y~~~  181 (300)
                      ++...|.|.
T Consensus       142 ~~s~~Y~p~  150 (216)
T 2c0z_A          142 LSSGTYDPA  150 (216)
T ss_dssp             EESSCCCTT
T ss_pred             ecCCccCHH
Confidence            456677664

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=85.17  E-value=1.7  Score=40.44  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=23.7

Q ss_pred             EEEEccCCcEEEeCCCCceeEEecCC
Q 022278          259 SWYPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       259 ~~~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      -...++|||++|+|+|-.|+..|.++
T Consensus       261 ~~~~l~pGD~LyiP~gWwH~V~~l~d  286 (349)
T 3d8c_A          261 YETVVGPGDVLYIPMYWWHHIESLLN  286 (349)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEECTT
T ss_pred             EEEEECCCCEEEECCCCcEEEEEcCC
Confidence            56788999999999999999999974

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=84.97  E-value=2.4  Score=36.08  Aligned_cols=69  Identities=17%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             CCCcCCCC----CCCceEEEEEEECEE-EEEEcC-------C--cEEEecc--CcEEEeCCCCceEEee-CCeEEEEE-E
Q 022278          113 ENARSALP----PHDVERFIFVVQGSA-MLTNAS-------G--VSSKLMV--DSYTYLPPNFAHSLRA-EGSATLVV-F  174 (300)
Q Consensus       113 PG~~~~~~----~h~gEEf~yVLeG~v-~l~v~g-------g--~~~~L~~--Gds~yfpa~~~H~~~N-~~~a~vl~-v  174 (300)
                      +|---+.|    ++....+++|++|++ .+.++.       |  ..+.|.+  +..+|+|+|..|.+.+ .+.|.++. .
T Consensus        56 ~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~  135 (183)
T 1dzr_A           56 KNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKA  135 (183)
T ss_dssp             TTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             CCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEEc
Confidence            55444445    247789999999997 555521       1  2356666  4789999999999998 45555443 4


Q ss_pred             Eeecccc
Q 022278          175 ERRYASL  181 (300)
Q Consensus       175 ~~~y~~~  181 (300)
                      ...|.|.
T Consensus       136 s~~Y~p~  142 (183)
T 1dzr_A          136 TNYYSPS  142 (183)
T ss_dssp             SSCCCTT
T ss_pred             CCccCHh
Confidence            5667663

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=84.77  E-value=3.5  Score=36.06  Aligned_cols=58  Identities=9%  Similarity=0.162  Sum_probs=41.5

Q ss_pred             cCCcccCcceeec---cceEEEEEEeeEE-EEeC--------CEEEEcc--C--CcEEEeCCCCceeEEecCCc
Q 022278          228 QPGDFLNVKEVHY---NQHGLLLLEGQGI-YRLG--------DSWYPVQ--A--GDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       228 ~PG~~~p~~~~H~---~eh~~~iL~G~G~-~~~~--------g~~~~v~--~--GD~i~~~~~~~H~~~n~G~e  285 (300)
                      .+|..=+.|-|+.   +..-+.+++|+.. +.+|        |+|..+.  +  +-.+|||+|+-|+|.|.+++
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~  136 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE  136 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC
Confidence            4777766654443   6777899999963 3333        2366553  3  46899999999999999886

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=84.29  E-value=3.5  Score=37.71  Aligned_cols=66  Identities=9%  Similarity=0.181  Sum_probs=47.8

Q ss_pred             EEEecCCcccCcce--eeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC--CccEEEE
Q 022278          224 IMDFQPGDFLNVKE--VHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG--KTRTRYL  290 (300)
Q Consensus       224 ~~tl~PG~~~p~~~--~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G--~e~~~fi  290 (300)
                      .++|+.|..+.. +  .-..|=++..|.|+|.+..+|+.+.+..-|.+|+|.|..-...+..  .+|++|.
T Consensus        61 ~l~L~~~~~~~~-~~fl~~rE~~iV~lgG~~~V~vdg~~f~lg~~dalYVp~G~~~v~~as~d~~~~a~fa  130 (289)
T 1ywk_A           61 ELEIILDKELGV-DYFLERRELGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFY  130 (289)
T ss_dssp             CEECCCSGGGTS-SSTTTTEEEEEEECSSCEEEEETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEE
T ss_pred             eEEcCCCceecc-cccCCCcEEEEEEccCeEEEEECCEEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEE
Confidence            466777766654 3  2344556788999999999999999999999999999875444432  2445543

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=84.01  E-value=5.5  Score=35.47  Aligned_cols=75  Identities=21%  Similarity=0.257  Sum_probs=47.1

Q ss_pred             CcEEEEEEEEcCCCcCCCCCC-CceEEEEEEEC---EEEEEEc---------------CC--------cEEEeccCcEEE
Q 022278          102 SHFVMYLANMQENARSALPPH-DVERFIFVVQG---SAMLTNA---------------SG--------VSSKLMVDSYTY  154 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h-~gEEf~yVLeG---~v~l~v~---------------gg--------~~~~L~~Gds~y  154 (300)
                      +.++--++.+.||+.++.|.| .-+|=+.+--|   .|+|...               ||        ...+|.||+++-
T Consensus       104 k~YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiT  183 (246)
T 3kmh_A          104 KCYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESIC  183 (246)
T ss_dssp             CCEEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEE
T ss_pred             CcceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEe
Confidence            356666777788877777633 34555555555   2233221               33        445789999999


Q ss_pred             eCCCCceEEeeC-C--eEEEEEEEe
Q 022278          155 LPPNFAHSLRAE-G--SATLVVFER  176 (300)
Q Consensus       155 fpa~~~H~~~N~-~--~a~vl~v~~  176 (300)
                      ++|++-|.|... +  ++-+-=|+.
T Consensus       184 l~Pg~~H~F~ae~g~G~vligEVSt  208 (246)
T 3kmh_A          184 LPPGLYHSFWAEAGFGDVLVGEVSS  208 (246)
T ss_dssp             ECTTEEEEEEECTTSCCEEEEEEEE
T ss_pred             cCCCCEEEEEecCCCccEEEEEccc
Confidence            999999999973 3  344444443

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=83.52  E-value=2.9  Score=33.26  Aligned_cols=50  Identities=22%  Similarity=0.331  Sum_probs=39.3

Q ss_pred             CCceEEEEEEECEEEEEE-c-C-----CcEEEeccCcEEEeCCCCceEEeeCCeEEE
Q 022278          122 HDVERFIFVVQGSAMLTN-A-S-----GVSSKLMVDSYTYLPPNFAHSLRAEGSATL  171 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~v-~-g-----g~~~~L~~Gds~yfpa~~~H~~~N~~~a~v  171 (300)
                      .+.-.-+-||+|++++.. . +     .+...+.+|+...++|...|++.-..++++
T Consensus        36 ~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sdD~~f   92 (119)
T 3dl3_A           36 VDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQF   92 (119)
T ss_dssp             TTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEE
T ss_pred             CcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECCCeEE
Confidence            456778899999999984 2 1     245789999999999999999996444444

>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2

Probab=83.32  E-value=0.1  Score=36.31  Aligned_cols=36  Identities=8%  Similarity=0.003  Sum_probs=28.7

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh----hhcccCCcce
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRS   65 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs   65 (300)
                      |+++||+++|+|++-+||.| + .-|+.    |.+++|-...
T Consensus        12 tq~~lA~~lGvs~~~Vs~we-~-~~p~~~~~~i~~~~~g~v~   51 (61)
T 1rzs_A           12 TQRAVAKALGISDAAVSQWK-E-VIPEKDAYRLEIVTAGALK   51 (61)
T ss_dssp             SHHHHHHHHTCCHHHHHHCC-S-BCCHHHHHHHHHHTTSCSC
T ss_pred             CHHHHHHHhCCCHHHHHHHH-h-hCCHHHHHHHHHHHCCCce
Confidence            89999999999999999999 3 44554    7777765444

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=83.27  E-value=5.2  Score=32.17  Aligned_cols=50  Identities=16%  Similarity=0.210  Sum_probs=38.4

Q ss_pred             CCceEEEEEEECEEEEE-EcC-C-----cEEEeccCcEEEeCCCCceEEee-CCeEEE
Q 022278          122 HDVERFIFVVQGSAMLT-NAS-G-----VSSKLMVDSYTYLPPNFAHSLRA-EGSATL  171 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~-v~g-g-----~~~~L~~Gds~yfpa~~~H~~~N-~~~a~v  171 (300)
                      .+.-+-+-||+|++++. +++ |     +.....+|+...+||+..|+++. ..++++
T Consensus        37 ~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsdd~~f   94 (127)
T 3bb6_A           37 PGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYF   94 (127)
T ss_dssp             TTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEE
T ss_pred             CCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCCCEEE
Confidence            34568899999999987 322 2     34578999999999999999996 445554

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=82.81  E-value=1.2  Score=34.21  Aligned_cols=69  Identities=9%  Similarity=0.202  Sum_probs=45.3

Q ss_pred             EEEEc-CCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCC---CCce--EE-eeCCeEEEEEEEe
Q 022278          108 LANMQ-ENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPP---NFAH--SL-RAEGSATLVVFER  176 (300)
Q Consensus       108 lv~l~-PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa---~~~H--~~-~N~~~a~vl~v~~  176 (300)
                      ..++. +|..--......+.+++|++|.+.+...+|+...+.+||++=..+   +.++  .. ...++++++.+.+
T Consensus        41 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~  116 (134)
T 2d93_A           41 FEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQ  116 (134)
T ss_dssp             EEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEH
T ss_pred             EEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeH
Confidence            45566 665433333456789999999999986567778999999763222   2222  33 4466788887743

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=82.35  E-value=5.6  Score=30.44  Aligned_cols=68  Identities=9%  Similarity=-0.008  Sum_probs=45.2

Q ss_pred             EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE-EEeccCcEEEe-----CCCCceEEeeCCeEEEEEEEe
Q 022278          108 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTYL-----PPNFAHSLRAEGSATLVVFER  176 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~-~~L~~Gds~yf-----pa~~~H~~~N~~~a~vl~v~~  176 (300)
                      ..++++|..--......+.+++|++|.+.+.. +|+. ..+.+||++=.     ......++...++++++.+.+
T Consensus        48 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~g~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~  121 (139)
T 3ocp_A           48 PVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDR  121 (139)
T ss_dssp             EEEECSSCEEECTTSCCCEEEEEEECCEEEEE-TTEEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEH
T ss_pred             EEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-CCEEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcH
Confidence            34556665433334567899999999999987 7665 68899997632     222334455567788887743

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=82.32  E-value=6.6  Score=33.82  Aligned_cols=64  Identities=9%  Similarity=0.061  Sum_probs=45.4

Q ss_pred             EEEecCCcccCcceeeccceEEEEEE-eeE-EE-EeC------CEEEE--ccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278          224 IMDFQPGDFLNVKEVHYNQHGLLLLE-GQG-IY-RLG------DSWYP--VQAGDVLWMAPFVPQWYAALGKTRTRYL  290 (300)
Q Consensus       224 ~~tl~PG~~~p~~~~H~~eh~~~iL~-G~G-~~-~~~------g~~~~--v~~GD~i~~~~~~~H~~~n~G~e~~~fi  290 (300)
                      ..+ .+|.-=+. |-|.+..-+.+++ |+. .+ .+.      |+|..  +.++-.+|+|+|+-|+|.+.++. .+++
T Consensus        65 S~s-~~GvlRGl-H~h~q~Klv~~~~~G~v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~-a~~~  139 (197)
T 1nxm_A           65 SFS-RKNVLRGL-HAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDF-VAYS  139 (197)
T ss_dssp             EEE-ETTBEEEE-EECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSE-EEEE
T ss_pred             EEC-CCCCccee-eecccceEEEEcCCCEEEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCC-eEEE
Confidence            344 67777676 4467778889999 993 33 333      45654  44788999999999999999865 4433

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=82.23  E-value=4.3  Score=34.22  Aligned_cols=64  Identities=8%  Similarity=0.080  Sum_probs=49.0

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECE-EEEEE--cCCcEEE------eccCcE--EEeCCCCceEEeeC
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGS-AMLTN--ASGVSSK------LMVDSY--TYLPPNFAHSLRAE  166 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~-v~l~v--~gg~~~~------L~~Gds--~yfpa~~~H~~~N~  166 (300)
                      ....++..|.+|..+..|....+|.-|...|. +++.+  .+|+..+      +.+|+.  +++|+|..+..++.
T Consensus        48 ~~T~IYfLL~~g~~S~~HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~  122 (170)
T 1yud_A           48 LWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMN  122 (170)
T ss_dssp             SCEEEEEEEETTCCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTEESCEEECTTCEEEEEES
T ss_pred             cceEEEEEECCCCCCeeEEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccCceeEEEECCCCEEEEEEC
Confidence            35566667788887777766789999999997 57766  3455444      667888  99999999999874

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=81.92  E-value=7.2  Score=30.28  Aligned_cols=67  Identities=18%  Similarity=0.068  Sum_probs=45.8

Q ss_pred             EEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE-EEeccCcEEEeCC-------CCceEEeeCCeEEEEEEEe
Q 022278          109 ANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTYLPP-------NFAHSLRAEGSATLVVFER  176 (300)
Q Consensus       109 v~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~-~~L~~Gds~yfpa-------~~~H~~~N~~~a~vl~v~~  176 (300)
                      .++++|..--......+.+++|++|.+.+.. +++. ..+.+||++=..+       ....+.+..++++++.+.+
T Consensus        53 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~  127 (160)
T 4f8a_A           53 VHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ-DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKR  127 (160)
T ss_dssp             EEECTTCEEECTTSBCCEEEEEEESEEEEEE-TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEH
T ss_pred             eeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcH
Confidence            4556665432233456899999999999998 6554 6899999887532       2334455577888888744

>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A

Probab=81.86  E-value=1.6  Score=40.78  Aligned_cols=43  Identities=16%  Similarity=0.373  Sum_probs=34.3

Q ss_pred             cceEEEEEEeeEEEEeCC----EEEEccCCcEEEeCCCCceeEEecC
Q 022278          241 NQHGLLLLEGQGIYRLGD----SWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       241 ~eh~~~iL~G~G~~~~~g----~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      -||-|.|++|+-.++-++    -...++|+|-.|+.|+++|.+.-.|
T Consensus       354 ge~hY~v~~G~lTL~W~~~dGt~~a~L~PDgSAwv~PFV~H~w~G~G  400 (443)
T 3g7d_A          354 AENHYVVTEGRLTLEWDGPDGPASVELEPDGSAWTGPFVRHRWHGTG  400 (443)
T ss_dssp             SEEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEESSE
T ss_pred             ccceEEEecCceEEEecCCCCccceEECCCCceeecccccccccCCc
Confidence            355678999988887652    2456899999999999999998554

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=81.63  E-value=7.3  Score=30.47  Aligned_cols=68  Identities=10%  Similarity=0.013  Sum_probs=45.4

Q ss_pred             EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE-EEeccCcEEEe-----CCCCceEEeeCCeEEEEEEEe
Q 022278          108 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTYL-----PPNFAHSLRAEGSATLVVFER  176 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~-~~L~~Gds~yf-----pa~~~H~~~N~~~a~vl~v~~  176 (300)
                      ..++++|..--......+.+++|++|.+.+.. +|+. ..+.+||++=.     ......++...++++++.+.+
T Consensus        63 ~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~  136 (154)
T 3pna_A           63 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDR  136 (154)
T ss_dssp             EEEECTTCEEECTTSCCCEEEEEEESCEEEEE-TTEEEEEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEH
T ss_pred             EEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-CCEEEEEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeH
Confidence            35567775443334567899999999999998 7665 67999998632     122233444566788777743

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=81.08  E-value=4.2  Score=35.43  Aligned_cols=150  Identities=11%  Similarity=0.030  Sum_probs=83.9

Q ss_pred             EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE-EEeccCcEEEeC---CC--CceEEeeCCeEEEEEEEeec-cc
Q 022278          108 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTYLP---PN--FAHSLRAEGSATLVVFERRY-AS  180 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~-~~L~~Gds~yfp---a~--~~H~~~N~~~a~vl~v~~~y-~~  180 (300)
                      ..++++|..--.....++.+++|++|.+.+.. +|+. ..+.+||++=--   .+  ...++...++++++.+.+.- ..
T Consensus        64 ~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~  142 (291)
T 2qcs_B           64 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRR  142 (291)
T ss_dssp             EEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TTEEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHH
T ss_pred             EEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CCeEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHH
Confidence            45566765443334567889999999999998 6654 789999987321   12  23445556778888774321 11


Q ss_pred             cCCCCcceee----ccCCCCCCcccCCceeEEEEeeCC-CCC-cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEE
Q 022278          181 LENHITEQIV----GSTDKQPLLETPGEVFQLRKLLPQ-AVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY  254 (300)
Q Consensus       181 ~~g~~p~~~~----~~~~d~~~~~~~g~~~~~~~l~p~-~~~-~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~  254 (300)
                      .-...|....    .-...++..  ..        ++. ... ....+....+++|..+= .+.....+.|+|++|+..+
T Consensus       143 ~~~~~~~~~~~~~~~~l~~~~lf--~~--------l~~~~~~~l~~~~~~~~~~~g~~i~-~~g~~~~~~y~i~~G~v~~  211 (291)
T 2qcs_B          143 ILMGSTLRKRKMYEEFLSKVSIL--ES--------LDKWERLTVADALEPVQFEDGQKIV-VQGEPGDEFFIILEGSAAV  211 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCGGG--TT--------CCHHHHHHHHHHCEEEEECTTCEEE-CTTSCCCEEEEEEEEEEEE
T ss_pred             HHhhhHHHHHHHHHHHHhhchHh--hh--------CCHHHHHHHHhhcEEEEECCCCEEE-eCCccCCEEEEEEeCEEEE
Confidence            0000011000    000011000  00        010 001 12235677888888773 3444455789999999988


Q ss_pred             Ee---CC----EEEEccCCcEE
Q 022278          255 RL---GD----SWYPVQAGDVL  269 (300)
Q Consensus       255 ~~---~g----~~~~v~~GD~i  269 (300)
                      ..   +|    ....+.+||++
T Consensus       212 ~~~~~~~~~~~~~~~l~~G~~f  233 (291)
T 2qcs_B          212 LQRRSENEEFVEVGRLGPSDYF  233 (291)
T ss_dssp             EEECSTTSCEEEEEEECTTCEE
T ss_pred             EEecCCCCccEEEEEeCCCCEe
Confidence            73   23    35678999986

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=80.54  E-value=2.2  Score=41.25  Aligned_cols=25  Identities=12%  Similarity=0.149  Sum_probs=22.8

Q ss_pred             EEEEccCCcEEEeCCCCceeEEecC
Q 022278          259 SWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       259 ~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      ....++|||++|+|+|..|+..+.+
T Consensus       199 ~~~~L~pGD~LYiP~g~~H~~~s~~  223 (442)
T 2xdv_A          199 HEFMLKPGDLLYFPRGTIHQADTPA  223 (442)
T ss_dssp             EEEEECTTCEEEECTTCEEEEECCS
T ss_pred             eEEEECCCcEEEECCCceEEEEecC
Confidence            4678999999999999999999885

>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}

Probab=80.04  E-value=0.084  Score=36.61  Aligned_cols=27  Identities=4%  Similarity=-0.036  Sum_probs=25.6

Q ss_pred             CCcccccccCCCCcceeeecCCCCChh
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPS   54 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps   54 (300)
                      |+.++|+++|+|++.+|+.||+...|+
T Consensus        15 s~~~~A~~lgis~~~vs~~~~~~~~~~   41 (67)
T 2pij_A           15 TQSALAAALGVNQSAISQMVRAGRSIE   41 (67)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHHTTCCEE
T ss_pred             CHHHHHHHHCcCHHHHHHHHcCCCCCC
Confidence            889999999999999999999998887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1sfna_	245	b.82.1.11 (A:) Hypothetical protein DR1152 {Deinoc	3e-68
d1sefa_	250	b.82.1.11 (A:) Hypothetical protein EF2996 {Entero	2e-67
d1rc6a_	253	b.82.1.11 (A:) Hypothetical protein YlbA {Escheric	6e-61
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	3e-58
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	9e-05
d2arca_	161	b.82.4.1 (A:) Regulatory protein AraC {Escherichia	8e-04
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	0.001
d1vj2a_	114	b.82.1.10 (A:) Hypothetical protein TM1459 {Thermo	0.003
d2pyta1	128	b.82.1.24 (A:100-227) Ethanolamine utilization pro	0.004

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  210 bits (536), Expect = 3e-68
 Identities = 94/244 (38%), Positives = 133/244 (54%), Gaps = 7/244 (2%)

Query: 61  GFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPA--MGSHFVMYLANMQENARSA 118
           G TRS     HA+ITPE+ V + L EW  +     I P   +G+ FV + A M   A++ 
Sbjct: 5   GQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQA- 63

Query: 119 LPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRY 178
                 +RF FV+ G   +    G +  L    Y YLP    H L A+  A + VFE+ Y
Sbjct: 64  -TESVYQRFAFVLSGEVDVA-VGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPY 121

Query: 179 ASLENHITEQIVGSTDKQ--PLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 236
            ++E      +    +++         +    RKLLP    FDF +  M F PG  L   
Sbjct: 122 QTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYA 181

Query: 237 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN 296
           EVHY +HGLL+LEG+G+Y+L +++YPV AGD++WM    PQWY ALG+  ++YLLYKD+N
Sbjct: 182 EVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMN 241

Query: 297 RNPL 300
           R+PL
Sbjct: 242 RHPL 245

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Length = 250

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

 Score =  209 bits (532), Expect = 2e-67
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 8/244 (3%)

Query: 63  TRSVYKRD-HALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPP 121
           +R+V K+D +A+I  +  V + +P + N   + L +P +G+ FV Y+A   +N +     
Sbjct: 6   SRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGF 65

Query: 122 H--DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS--ATLVVFERR 177
               ++  ++V+ G   +++    + +L    Y Y  P     L         + ++++R
Sbjct: 66  GGDGIQTLVYVIDGRLRVSDG-QETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKR 124

Query: 178 YASLENHITEQIVGST-DKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 236
           Y  L  H   ++VGS  D+QP          L  LLP+   FD N+HI+ F+PG      
Sbjct: 125 YQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYI 184

Query: 237 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR-TRYLLYKDV 295
           E H  +HG  L+ GQG+Y L + WYPV+ GD ++M+ +VPQ   A+G+     Y+  KD 
Sbjct: 185 ETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDA 244

Query: 296 NRNP 299
           NR P
Sbjct: 245 NREP 248

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

 Score =  192 bits (488), Expect = 6e-61
 Identities = 70/250 (28%), Positives = 123/250 (49%), Gaps = 9/250 (3%)

Query: 57  QDLPGFTRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENA 115
           +DL    R++ K  + AL+TP+  V + +P + N     L TP +G+ FV YL  + +N 
Sbjct: 4   EDLLA-NRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNG 62

Query: 116 RSALPPH--DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS--ATL 171
            +        +E F++V+ G+     A G +  L    Y Y PP    +     +  + +
Sbjct: 63  GNQQGFGGEGIETFLYVISGNITAK-AEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQI 121

Query: 172 VVFERRYASLENHITEQIVGS-TDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPG 230
            +++RRY  +E +    + G+ ++ + +     +   L   LP+ + FD N+HI+ F PG
Sbjct: 122 FLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPG 181

Query: 231 DFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RY 289
                 E H  +HG  +L GQG+Y L ++W PV+ GD ++M  +  Q    +G+     Y
Sbjct: 182 ASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSY 241

Query: 290 LLYKDVNRNP 299
           +  KD NR+ 
Sbjct: 242 IYSKDCNRDV 251

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  186 bits (472), Expect = 3e-58
 Identities = 70/250 (28%), Positives = 112/250 (44%), Gaps = 14/250 (5%)

Query: 63  TRSVYKRDHALI---TPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARS 117
            R+++   +A+I        V S LP W N     +  P  G    F  Y+  +  N  S
Sbjct: 20  DRAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGS 79

Query: 118 ALPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS--ATLVV 173
             P  D   E  +FVV+G   LT   G    +    Y ++PP   + +R           
Sbjct: 80  DKPEQDPNAEAVLFVVEGELSLTLQ-GQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHW 138

Query: 174 FERRYASLENHITEQIVGSTDKQ----PLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQP 229
             + Y  ++     +   + ++      + +T G     R +    +  D +++I++F+P
Sbjct: 139 IRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEGRWSTTRFVDMSDMRHDMHVNIVNFEP 198

Query: 230 GDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRY 289
           G  +   E H  +HGL +LEG+ +YRL   W  V+AGD +W+  F PQ   + G  R RY
Sbjct: 199 GGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRY 258

Query: 290 LLYKDVNRNP 299
           LLYKDVNR+ 
Sbjct: 259 LLYKDVNRHM 268

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.0 bits (95), Expect = 9e-05
 Identities = 24/200 (12%), Positives = 52/200 (26%), Gaps = 3/200 (1%)

Query: 92  GAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDS 151
           G Y   PA   H     ++        +  +    +  +        +    S ++  + 
Sbjct: 88  GDYANIPAGTPHSYRMQSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNER 147

Query: 152 YTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKL 211
           +             E              L +     ++ S +   L  T  ++ ++   
Sbjct: 148 FAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPYVLESGEGDRL-LTGDQLHRI-VA 205

Query: 212 LPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWM 271
             +     F +   +   GD +      Y+      LEGQ           +  GD L +
Sbjct: 206 AQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQEIQLNPGDFLHV 265

Query: 272 APFVPQWYAALGKTRTRYLL 291
                  Y       T+ + 
Sbjct: 266 PANTVHSYRLDSHY-TKMVG 284

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]} Length = 161

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (85), Expect = 8e-04
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 245 LLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 281
            L + GQG+ +     +  + GD+L   P     Y  
Sbjct: 42  NLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGR 78

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 4/131 (3%)

Query: 89  NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLM 148
              G   IT  + +   +    +     +    H+     F+V+G    T   G  + + 
Sbjct: 43  ALRGQSSITATLYAGLQL----IMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMN 98

Query: 149 VDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQL 208
              +   P    H     G   ++  +     L N +         ++    T  E   L
Sbjct: 99  EGDFILTPQWRWHDHGNPGDEPVIWLDGLDLPLVNILGCGFAEDYPEEQQPVTRKEGDYL 158

Query: 209 RKLLPQAVPFD 219
            +     +P  
Sbjct: 159 PRYAANMLPLR 169

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Length = 114

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.4 bits (78), Expect = 0.003
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 95  LITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY 154
           LI      +FVM L  ++         H  E  IFV++G   +         +    Y +
Sbjct: 27  LIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK-EQGEETVEEGFYIF 85

Query: 155 LPPNFAHSLRAEGSATLVV 173
           + PN  H  R +  + +  
Sbjct: 86  VEPNEIHGFRNDTDSEVEF 104

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Length = 128

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

 Score = 34.5 bits (79), Expect = 0.004
 Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 3/80 (3%)

Query: 95  LITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY 154
           L+T   GS                   +D      V++G   + +  G +         +
Sbjct: 45  LVTEQDGSSMAAGFMQWDNAFFPWTLNYD--EIDMVLEGELHVRHE-GETMIAKAGDVMF 101

Query: 155 LPPNFAHSLRAEGSATLVVF 174
           +P   +       S   +  
Sbjct: 102 IPKGSSIEFGTPTSVRFLYV 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	100.0
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	100.0
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	100.0
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	100.0
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.94
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.86
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.86
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.84
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	99.81
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.81
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	99.78
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.75
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.73
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	99.69
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.69
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.67
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.64
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.64
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.63
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	99.62
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.62
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.52
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.49
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.49
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.47
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.44
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.44
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.44
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.43
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	99.43
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.42
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.4
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.34
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.33
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	99.33
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	99.27
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.17
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.11
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.05
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.04
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	99.03
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.89
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.84
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.8
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	98.79
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	98.79
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	98.74
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.68
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.62
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	98.61
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	98.58
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	98.57
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	98.53
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	98.53
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	98.52
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.5
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	98.45
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	98.45
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	98.43
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	98.4
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	98.34
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	98.33
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	98.32
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	98.32
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	98.3
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	98.25
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	98.22
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	98.17
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	98.12
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	98.11
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	98.1
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	97.99
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	97.96
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	97.83
d1y7ya1	69	Restriction-modification controller protein C.AhdI	97.79
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	97.76
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	97.69
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	97.67
d1utxa_	66	Putative transcription regulator CylR2 {Enterococc	97.62
d2ofya1	82	Putative transcriptional regulator RHA1_ro04071 {R	97.61
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	97.56
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.54
d1lmb3_	87	lambda C1 repressor, DNA-binding domain {Bacteriop	97.38
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	97.38
d1y9qa1	79	Probable transcriptional regulator VC1968, N-termi	97.32
d2b5aa1	77	Regulatory protein C.BclI {Bacillus caldolyticus [	97.3
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.26
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	97.22
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.2
d2a6ca1	69	HTH-motif protein NE1354 {Nitrosomonas europaea [T	97.15
d1b0na2	68	SinR repressor, DNA-binding domain {Bacillus subti	97.09
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	97.04
d2r1jl1	66	P22 C2 repressor, DNA-binding domain {Salmonella b	97.03
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	97.03
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	96.94
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	96.93
d1r69a_	63	434 C1 repressor, DNA-binding domain {Bacteriophag	96.78
d1x57a1	78	Endothelial differentiation-related factor 1, EDF1	96.66
d2croa_	65	cro 434 {Bacteriophage 434 [TaxId: 10712]}	96.61
d2o38a1	89	Hypothetical protein RPA3824 {Rhodopseudomonas pal	96.59
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	96.36
d2icta1	87	Antitoxin HigA {Escherichia coli [TaxId: 562]}	96.28
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	96.27
d1ylla1	195	Hypothetical protein PA5104 {Pseudomonas aeruginos	96.22
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	95.72
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	95.67
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	95.46
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	95.29
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	94.38
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	94.38
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	94.04
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	93.82
d2ppxa1	62	Uncharacterized protein Atu1735 {Agrobacterium tum	93.8
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	93.59
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	93.5
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	93.46
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	91.38
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	91.15
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	90.87
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	90.51
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	89.9
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	88.6
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	87.39
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	86.99
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	85.62
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	85.46
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	85.16
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	84.77
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	84.62
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	84.26
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	84.14
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	83.22
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	82.72
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	82.36
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	82.21
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	82.06
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	82.05
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	81.88
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	81.62
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	81.51
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	80.56
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	80.49
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	80.27

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.8e-60  Score=437.31  Aligned_cols=242  Identities=30%  Similarity=0.517  Sum_probs=222.4

Q ss_pred             hcccCCcceeeeeeeeEeCC---CCeeeccCCCCCcceEEEEecCCCC--CcEEEEEEEEcCCCcCCCC--CCCceEEEE
Q 022278           57 QDLPGFTRSVYKRDHALITP---ESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALP--PHDVERFIF  129 (300)
Q Consensus        57 ~~~lg~trs~f~~~~av~~~---e~~~~~~~p~~~~~~~~~L~sp~~g--~~f~~~lv~l~PG~~~~~~--~h~gEEf~y  129 (300)
                      ++.|.++|++|+++|+|+++   .+.+.+.+|+|++++.++|++|.+|  +.|++++++++||+++..+  .++.|||+|
T Consensus        14 ~~~l~~~Rav~~~~yavip~~~~~~iv~s~lP~w~~~~~~vl~~p~~G~a~~F~~y~vev~PGg~s~~p~~~~~~Ee~~y   93 (273)
T d1sq4a_          14 QTELLTDRAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLF   93 (273)
T ss_dssp             ---CCCCCCEECSSEEEECGGGCCGGGCBCCTTCEEEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEE
T ss_pred             hhHhccCceEeccceEEccCcccccceeecCCCCCCceEEEECCcccCCCcceEEEEEEECCCCccCCCCCCCCcEEEEE
Confidence            45678999999999999966   7899999999999999999999999  6899999999999976443  567899999


Q ss_pred             EEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCCC-CcceeeccCCCCCCcccCC--c
Q 022278          130 VVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG--E  204 (300)
Q Consensus       130 VLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g~-~p~~~~~~~~d~~~~~~~g--~  204 (300)
                      |++|++++++ +|+++.|++||++|+|++.+|+++|  +++|+++||.++|++.+|. +|..++++++|+++.++++  +
T Consensus        94 Vl~G~~~l~~-~g~~~~L~~Gd~~y~P~g~~h~~~N~g~~~a~~l~i~k~y~~~~g~~~p~~~v~~~~dv~p~~~~~~~~  172 (273)
T d1sq4a_          94 VVEGELSLTL-QGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEG  172 (273)
T ss_dssp             EEESCEEEEE-SSCEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEEECCCCTTCCCCCCEEEEGGGSCCEECSSGGG
T ss_pred             EEeCEEEEEE-CCEEEEecCCCEEEECCCCcEeeeecCCCCEEEEEEEeccccccccccccccccChhccCcccccCCCc
Confidence            9999999999 9999999999999999999999998  7899999999999999995 6889999999999999887  2


Q ss_pred             e-eEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          205 V-FQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       205 ~-~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      . ...|.++|++.+++|+|++++|+||++++.+|+|.+||++|||+|+|+|++||+|++|++||+|||+++|+|+++|+|
T Consensus       173 ~~~~~r~~~p~d~~~d~~~~i~~~~PG~~~~~~h~H~~ee~~~vl~G~~~~~~~~~~~~v~~GD~i~~~~~~ph~~~n~g  252 (273)
T d1sq4a_         173 RWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGG  252 (273)
T ss_dssp             CEEEECSSCTTCTTCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTEEEEEETTCEEEEEESCCEEEECCS
T ss_pred             eeEEEEeeCCcccccceEEEEEEEccCCccccccccccceEEEEEccEEEEEECCEEEEecCCCEEEECCCCCEEeEeCC
Confidence            2 233446688999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEeecCCCC
Q 022278          284 KTRTRYLLYKDVNRNP  299 (300)
Q Consensus       284 ~e~~~fi~~kd~nr~~  299 (300)
                      ++|++||+|||||||+
T Consensus       253 ~~p~~yl~~kd~nR~~  268 (273)
T d1sq4a_         253 PGRFRYLLYKDVNRHM  268 (273)
T ss_dssp             SSCEEEEEEEECSSCC
T ss_pred             CCCEEEEEEEEcCcCc
Confidence            9999999999999996

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.4e-59  Score=426.11  Aligned_cols=240  Identities=40%  Similarity=0.744  Sum_probs=228.4

Q ss_pred             cccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEEecCCCC--CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEE
Q 022278           58 DLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALPPHDVERFIFVVQGSA  135 (300)
Q Consensus        58 ~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g--~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v  135 (300)
                      +.||.|||++.++|||++||+++.+.+|+|.++..+++++|.+|  ++|.+++++++||+++.  .|+.|+|+|||+|++
T Consensus         2 ~~~~~tRs~~~~~~a~i~P~~~v~s~~P~w~~~~~~~l~sP~~g~~~~F~~~~v~~~pGg~~~--~~~~E~~~~Vl~G~~   79 (245)
T d1sfna_           2 KHLGQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQAT--ESVYQRFAFVLSGEV   79 (245)
T ss_dssp             GGGTCCSCEEETTEEEECGGGCCCBCCTTSTTCEEEEEECTTSTTCCSSEEEEEEECTTCEEE--CCSSEEEEEEEEEEE
T ss_pred             cccccceeeeecceEEECCcccEecCCCCCCCcEEEEEecCCCCCCCceEEEEEEECCCCCCC--CCCccEEEEEEECEE
Confidence            57899999999999999999999999999999999999999865  78999999999998763  578899999999999


Q ss_pred             EEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCC-CCcceeeccCCCCCCcccCC-ceeEEEEeeC
Q 022278          136 MLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLEN-HITEQIVGSTDKQPLLETPG-EVFQLRKLLP  213 (300)
Q Consensus       136 ~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g-~~p~~~~~~~~d~~~~~~~g-~~~~~~~l~p  213 (300)
                      ++++ +|+++.|++||++|+|+|.+|.++|++.+++.|+.++|++.++ .+|..+++++++++..+.++ +....+.++|
T Consensus        80 ~~~~-~g~~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~r~l~p  158 (245)
T d1sfna_          80 DVAV-GGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPYQTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLP  158 (245)
T ss_dssp             EEEC-SSCEEEECTTEEEEECTTCCCEEEEEEEEEEEEEEECCCCBTTBCCCCCEEEETTTCCCEETTSCTTEEEEECSC
T ss_pred             EEEE-CCEEEEecCCCEEEeCCCCcEEEEeCCCccEEEEEeecccccccCCCcceecccccccccCCccccceEEEecCC
Confidence            9999 9999999999999999999999999888999999999999998 57899999999999999886 6667788899


Q ss_pred             CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEe
Q 022278          214 QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  293 (300)
Q Consensus       214 ~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  293 (300)
                      .+.++++.|++++|+||+.++.||+|.+||.+|||+|+|.+.+||+|++|++||+||++++|+|+++|+|+++++|||||
T Consensus       159 ~~~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i~~~~~~v~~GD~i~~~~~~~H~~~n~g~~~~~~l~~k  238 (245)
T d1sfna_         159 DEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYK  238 (245)
T ss_dssp             CCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEESSSCEEEEEEE
T ss_pred             cccccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEECCEEEEecCCCEEEECCCCCEeeEeCCCCCEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCC
Q 022278          294 DVNRNPL  300 (300)
Q Consensus       294 d~nr~~~  300 (300)
                      |||||||
T Consensus       239 ~~~~~p~  245 (245)
T d1sfna_         239 DMNRHPL  245 (245)
T ss_dssp             ECSSCCC
T ss_pred             cCCCCCC
Confidence            9999998

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=4.9e-57  Score=410.27  Aligned_cols=240  Identities=31%  Similarity=0.588  Sum_probs=226.2

Q ss_pred             ccCCcceeeee-eeeEeCCCCeeeccCCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCC--CCCceEEEEEEECEE
Q 022278           59 LPGFTRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP--PHDVERFIFVVQGSA  135 (300)
Q Consensus        59 ~lg~trs~f~~-~~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~--~h~gEEf~yVLeG~v  135 (300)
                      -|..||+++++ .+|+++|++++.+.+|+|+++.+++|++|.+|++|.+++++++||+....+  .++.|||+|||+|++
T Consensus         2 ~l~~~r~~~~~~~~a~i~p~~~v~~~~P~~~~~~~~~L~sp~~Ga~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~   81 (250)
T d1sefa_           2 ELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRL   81 (250)
T ss_dssp             CCCCCCCEEETTTEEEECGGGCCCCCCTTEEEEEEEECSCGGGTCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEE
T ss_pred             cccccceeeeecCEEEECCcCcEeccCCCcCcEEEEEEcCcccCCcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEE
Confidence            47889999998 589999999999999999999999999999999999999999999976443  577899999999999


Q ss_pred             EEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCCCCcceeeccCCCCCCcccCC-ceeEEEEee
Q 022278          136 MLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLL  212 (300)
Q Consensus       136 ~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g-~~~~~~~l~  212 (300)
                      ++++ +|+++.|++||++|+|++.+|+++|  +++++++||.++|.+.++..|.++.++..++++...++ +....+.++
T Consensus        82 ~~~~-~~~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v~~~y~~~~~~~p~~~~~~~~~~e~~~~~~~~~~~~~~~~  160 (250)
T d1sefa_          82 RVSD-GQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLL  160 (250)
T ss_dssp             EEEC-SSCEEEEETTEEEEECTTSCCEEEESSSSCEEEEEEEEECCCCTTCCCCCEEEEGGGSCCEEGGGCTTEEEEECS
T ss_pred             EEEE-CCEEEEEcCCCEEEEcCCCcEEEEECCCCCEEEEEEEEeccccccccccccccccccccccccCCccccceEEec
Confidence            9999 9999999999999999999999999  78999999999999999999999999999999998776 555677788


Q ss_pred             CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC-CccEEEEE
Q 022278          213 PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG-KTRTRYLL  291 (300)
Q Consensus       213 p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G-~e~~~fi~  291 (300)
                      |.+...+|.|++++|+||+.+|.+|+|.+||.+|||+|+|.+++||+|+++++||+||++|+|||++.|+| +++++||+
T Consensus       161 p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~~~~~~~~~~GD~i~~~~~~pH~~~n~G~~~~~~~l~  240 (250)
T d1sefa_         161 PKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVY  240 (250)
T ss_dssp             CSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEECSSSCEEEEE
T ss_pred             CccccccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEECCEEEEecCCCEEEECCCCCEEeEcCCCCCcEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 58999999


Q ss_pred             EeecCCCC
Q 022278          292 YKDVNRNP  299 (300)
Q Consensus       292 ~kd~nr~~  299 (300)
                      ||||||||
T Consensus       241 ~k~~~~~~  248 (250)
T d1sefa_         241 SKDANREP  248 (250)
T ss_dssp             EEECSSCC
T ss_pred             EecCCCCC
Confidence            99999998

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-54  Score=394.60  Aligned_cols=241  Identities=28%  Similarity=0.538  Sum_probs=219.7

Q ss_pred             cccCCcceeeee-eeeEeCCCCeeeccCCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCC--CCCceEEEEEEECE
Q 022278           58 DLPGFTRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP--PHDVERFIFVVQGS  134 (300)
Q Consensus        58 ~~lg~trs~f~~-~~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~--~h~gEEf~yVLeG~  134 (300)
                      ..|..+|+.+.+ ++++++|++++.+.+|+|+++..++|++|.+|+.|++++++|+||+++..+  .|+.|||+|||+|+
T Consensus         4 ~~~l~~r~~~~~~~~a~i~P~~~~~~~~P~~~~~~~~~l~sp~~g~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~   83 (253)
T d1rc6a_           4 EDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGN   83 (253)
T ss_dssp             HHHTCCCCEECTTSEEEECGGGSCCBCCTTEEEEEEEECCCGGGTCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESE
T ss_pred             hhhhhcceeeeccCEEEECCCcccccCCCCCCCeeEEEEeCcccCCceEEEEEEECCCcccCCcccCCCcEEEEEEEECE
Confidence            456789999988 799999999999999999999999999999999999999999999877543  56789999999999


Q ss_pred             EEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCCCCcceeeccCCCCCCcccCC-ceeEEEEe
Q 022278          135 AMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKL  211 (300)
Q Consensus       135 v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g-~~~~~~~l  211 (300)
                      +++++ +|+++.|++||++|+|++.+|+++|  +++++++||.++|...++..|....+++.+++..+.++ +....+.+
T Consensus        84 ~~~~~-~~~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  162 (253)
T d1rc6a_          84 ITAKA-EGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDF  162 (253)
T ss_dssp             EEEEE-TTEEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEECCCCTTCCCCCEEEEGGGSCCC-------CEEEEC
T ss_pred             EEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEeccccCCCccceeecccccccccccccccceeEEEEe
Confidence            99999 9999999999999999999999999  78999999999999999988999999999999998886 66677788


Q ss_pred             eCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCC-ccEEEE
Q 022278          212 LPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYL  290 (300)
Q Consensus       212 ~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi  290 (300)
                      .|.+...+|.|++++|+||+.++.+|+|..||.+|||+|+|.+++||+++++++||+||++|++||++.|+|+ ++++||
T Consensus       163 ~p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~g~~~i~~~~~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~~  242 (253)
T d1rc6a_         163 LPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYI  242 (253)
T ss_dssp             SCCSTTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSCEEEEETTCEEEECSSEEEEEEEC----CEEEE
T ss_pred             cCccccccEEEEEEEECCCceEeEEEeCCceEEEEEeCCEEEEEECCEEEEecCCCEEEECCCCCEeeeeCCCCCcEEEE
Confidence            8999999999999999999999989999999999999999999999999999999999999999999999996 678999


Q ss_pred             EEeecCCCC
Q 022278          291 LYKDVNRNP  299 (300)
Q Consensus       291 ~~kd~nr~~  299 (300)
                      +||||||||
T Consensus       243 ~~~~~~~~~  251 (253)
T d1rc6a_         243 YSKDCNRDV  251 (253)
T ss_dssp             EEEECSCCC
T ss_pred             EEECCCCCC
Confidence            999999998

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=2.5e-25  Score=207.31  Aligned_cols=216  Identities=17%  Similarity=0.148  Sum_probs=153.0

Q ss_pred             eEeCCCCeeeccCCCCCcceEEEEecCC-CCCcEEEEEEEEcCCCcCCCCCC-CceEEEEEEECEEEEEEcCCcEEEecc
Q 022278           72 ALITPESHVLSPLPEWTNTLGAYLITPA-MGSHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNASGVSSKLMV  149 (300)
Q Consensus        72 av~~~e~~~~~~~p~~~~~~~~~L~sp~-~g~~f~~~lv~l~PG~~~~~~~h-~gEEf~yVLeG~v~l~v~gg~~~~L~~  149 (300)
                      .++++.+.....++   +...++++++. .+..|+.+.++++||+..+.|.| ..+|++||++|++++++ +|+++.|++
T Consensus        12 ~~~~~geg~~~~~~---g~~~~~~~~~~~t~~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~~~~~l~~   87 (330)
T d1y3ta1          12 YLLRSGEGERYLFG---RQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL-DGERYLLIS   87 (330)
T ss_dssp             EEECTTCSEEEEET---TEEEEEEECHHHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE-TTEEEEECT
T ss_pred             EEECCCCccEEEeC---CceEEEEEeccCCCCcEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEE-CCEEEEEcC
Confidence            34555443333333   35566777764 46789999999999998887755 57899999999999999 999999999


Q ss_pred             CcEEEeCCCCceEEee-CCeEEEEEEEeec----------cccCCC-Ccceeec--------------------------
Q 022278          150 DSYTYLPPNFAHSLRA-EGSATLVVFERRY----------ASLENH-ITEQIVG--------------------------  191 (300)
Q Consensus       150 Gds~yfpa~~~H~~~N-~~~a~vl~v~~~y----------~~~~g~-~p~~~~~--------------------------  191 (300)
                      ||++|+|++.+|.++| ..+++++++..+-          .+.++. .+.....                          
T Consensus        88 Gd~~~~p~~~~H~~~n~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (330)
T d1y3ta1          88 GDYANIPAGTPHSYRMQSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPAC  167 (330)
T ss_dssp             TCEEEECTTCCEEEEECSTTEEEEEEEETTSSTHHHHHHSEECSCSSCCSSCCCCCTTCTTGGGTSSCEECCCCCCCSSC
T ss_pred             CCEEEeCCCCeEEEEEcCCCeEEEEEECCccHHHhhhhhceecccccCCccccccccccccccccccccccccccccccc
Confidence            9999999999999999 4456666654431          111110 0000000                          


Q ss_pred             -----cCCCCCCcc-----c--CC-----ceeEEEEeeC-CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEE
Q 022278          192 -----STDKQPLLE-----T--PG-----EVFQLRKLLP-QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGI  253 (300)
Q Consensus       192 -----~~~d~~~~~-----~--~g-----~~~~~~~l~p-~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~  253 (300)
                           .....+...     .  +|     ++...+.+.. .+....+.+..+++.||...+.|.|+..+|.+||++|++.
T Consensus       168 ~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~  247 (330)
T d1y3ta1         168 SAKLAELTELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMT  247 (330)
T ss_dssp             SCEECCBCSCCSSSCCEEECTTCSEEEEETTEEEEEEECGGGTTTSCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEE
T ss_pred             cccccccccCCccceeeEEEcccCceEecCCceEEEcCCCcccCCcEEEEEEEECCCCccCccCcCCccEEEEEEecEEE
Confidence                 000111111     0  11     1223333333 2334567788999999999998655567789999999999


Q ss_pred             EEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          254 YRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       254 ~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +++||+++++++||++++|+|.+|+|.|.|+ +.++|..
T Consensus       248 ~~v~~~~~~~~~Gd~~~vP~g~~H~~~~~~~-~~~~l~~  285 (330)
T d1y3ta1         248 MWTDGQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGV  285 (330)
T ss_dssp             EEETTEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEE
T ss_pred             EEECCEEEEeCCCCEEEECcCCcEEeEeCCC-CeEEEEE
Confidence            9999999999999999999999999999875 6777764

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=4.9e-21  Score=176.77  Aligned_cols=201  Identities=12%  Similarity=0.157  Sum_probs=142.1

Q ss_pred             eEEEEecCCCC------CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEe
Q 022278           91 LGAYLITPAMG------SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR  164 (300)
Q Consensus        91 ~~~~L~sp~~g------~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~  164 (300)
                      +.-+|+.|..+      ..|...+.+|+||+..+.|.|..+|.+|||+|+.++++.+++++.+++||++++|++..|.++
T Consensus        35 r~~~l~np~~~~~~~~~~~l~~~~~~l~PG~~~~~H~H~~~e~~~vl~G~g~~t~~~~~~~~~~~Gd~~~~P~~~~H~~~  114 (308)
T d2d40a1          35 RVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHG  114 (308)
T ss_dssp             ---EECCSSCTTSCCSSSSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETTEEEECCTTCEEEECTTSCEEEE
T ss_pred             EEEEeeCCCcCCCcccCccceeeeEEECCCCccccccCchhheEEEEEeeEEEEEecCEEEEecCCCEEEeCCCceEEeE
Confidence            33445555332      358888999999998888888999999999999987533889999999999999999999999


Q ss_pred             e--CCeEEEEEEEee---------c-cccCC-CCcce-----------------eeccCCCCCCc-----c---------
Q 022278          165 A--EGSATLVVFERR---------Y-ASLEN-HITEQ-----------------IVGSTDKQPLL-----E---------  200 (300)
Q Consensus       165 N--~~~a~vl~v~~~---------y-~~~~g-~~p~~-----------------~~~~~~d~~~~-----~---------  200 (300)
                      |  ++++.++.+...         | ++.+. ..+..                 ......+-+..     .         
T Consensus       115 n~g~e~~~~l~~~d~pl~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  194 (308)
T d2d40a1         115 NPGDEPVIWLDGLDLPLVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLT  194 (308)
T ss_dssp             CCSSSCEEEEEEECHHHHHHHTCCCEEECC--CCCCCSCTTTHHHHHSSSEECSSCCCCSSCSCCEECHHHHHHHHHHHH
T ss_pred             ECCCCCEEEEEEeccchhhhcCeeeeccCcccccccccCccchhhhcccccccccccccccCcccccchhhHHHHHHHHH
Confidence            9  678888887521         1 01000 00000                 00000000000     0         


Q ss_pred             --cCC---ceeEEEEeeCCC---CCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeC
Q 022278          201 --TPG---EVFQLRKLLPQA---VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMA  272 (300)
Q Consensus       201 --~~g---~~~~~~~l~p~~---~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~  272 (300)
                        .++   .+..++...|..   ....+.+....++||...+. |.|..++.+||++|+|.+.+||+..++++||++++|
T Consensus       195 ~~~~~~~~~g~~v~~~~~~~~~~~~~t~~~~~~~l~pG~~~~~-h~h~~~~~~~v~~G~g~~~v~~~~~~~~~GD~~~vP  273 (308)
T d2d40a1         195 RLGDADEWDGYKMRYVNPVTGGYPMPSMGAFLQLLPKGFASRV-ARTTDSTIYHVVEGSGQVIIGNETFSFSAKDIFVVP  273 (308)
T ss_dssp             TTSCCBTTTBEEEEECCTTTSSCSSSSCEEEEEEECTTCBCCC-BEESSCEEEEEEEEEEEEEETTEEEEEETTCEEEEC
T ss_pred             hccCCCCCCceEEEeeccccccCccceeEEEEEEccCCCccCC-ccCChheEEEEEeCcEEEEECCEEEEEeCCCEEEeC
Confidence              011   222333333432   23567888899999999997 677888999999999999999999999999999999


Q ss_pred             CCCceeEEecCCccEEEEEEee
Q 022278          273 PFVPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       273 ~~~~H~~~n~G~e~~~fi~~kd  294 (300)
                      +++.|++.|.|+.  .++.+.|
T Consensus       274 ~~~~h~~~~~~d~--~l~~v~D  293 (308)
T d2d40a1         274 TWHGVSFQTTQDS--VLFSFSD  293 (308)
T ss_dssp             TTCCEEEEEEEEE--EEEEEES
T ss_pred             CCCeEEEEcCCCe--EEEEEcC
Confidence            9999999998754  4455565

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.86  E-value=8.2e-21  Score=178.14  Aligned_cols=203  Identities=12%  Similarity=0.089  Sum_probs=142.3

Q ss_pred             ceEEEEecC-CCCCcEEEEEEEEcCCCcC--CCCCCC-ceEEEEEEECEEEEEEcC----CcEEEeccCcEEEeCCCCce
Q 022278           90 TLGAYLITP-AMGSHFVMYLANMQENARS--ALPPHD-VERFIFVVQGSAMLTNAS----GVSSKLMVDSYTYLPPNFAH  161 (300)
Q Consensus        90 ~~~~~L~sp-~~g~~f~~~lv~l~PG~~~--~~~~h~-gEEf~yVLeG~v~l~v~g----g~~~~L~~Gds~yfpa~~~H  161 (300)
                      ..++.+++. ..+..|..+.++++||+..  ..|.|. .+|.+|||+|++++++.+    +++..|++||++++|+|++|
T Consensus        31 ~~~~~~~~~~~t~g~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H  110 (348)
T d1juha_          31 QLYRFYVTGPSSGYAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTH  110 (348)
T ss_dssp             EEEEEEECHHHHTTSCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEE
T ss_pred             CEEEEEeccccCCCeEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeE
Confidence            355655554 4567899999999999865  346565 579999999999998822    26799999999999999999


Q ss_pred             EEee-CCeEEEEEEEeecc----------ccCC-CC----c------------ceeecc---------------------
Q 022278          162 SLRA-EGSATLVVFERRYA----------SLEN-HI----T------------EQIVGS---------------------  192 (300)
Q Consensus       162 ~~~N-~~~a~vl~v~~~y~----------~~~g-~~----p------------~~~~~~---------------------  192 (300)
                      .++| +..++++++..+-.          +... ..    |            ....+.                     
T Consensus       111 ~~~n~~~~~~~l~v~~pg~~e~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  190 (348)
T d1juha_         111 TFQIQDPDTEMTGVIVPGGFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNG  190 (348)
T ss_dssp             EEEECSTTEEEEEEEESSCTTHHHHHHSEECCCTTCCSSCCC--------------CGGGGGGTCEECTTCCCCCCCBTT
T ss_pred             eeEeCCCCcEEEEEECCCcHHHHHHhhCCchhccCCcccccccccchhhccCChhhhccccccccccccccCCccccccc
Confidence            9999 56788888765421          0000 00    0            000000                     


Q ss_pred             -------CCCC-------CCccc-------------CCceeEEEEee-CC---CCCcceEEEEEEecCCcccCcceeecc
Q 022278          193 -------TDKQ-------PLLET-------------PGEVFQLRKLL-PQ---AVPFDFNIHIMDFQPGDFLNVKEVHYN  241 (300)
Q Consensus       193 -------~~d~-------~~~~~-------------~g~~~~~~~l~-p~---~~~~~~~~~~~tl~PG~~~p~~~~H~~  241 (300)
                             |...       ...++             ..+....|.++ +.   .....+.+..++++||+....|+||..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~i~~~~~~~~~t~~~~~~~~~~~~~~~pg~~~~~~~~~~~  270 (348)
T d1juha_         191 TAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPG  270 (348)
T ss_dssp             EESSSSCSSSSCCCCCSSTTCCEEECTTCSCEEEECTTSCEEEEEEECHHHHGGGCEEEEEEEECCCCTTSCCCCBCCSS
T ss_pred             cccccccccccccccccccCcceEeecccCcccccccCCceEEeeeecccccCCcccceeEEEEEecCCCCCCCcccCCC
Confidence                   0000       00000             00122333333 22   223467788899999999988888899


Q ss_pred             ceEEEEEEeeEEEEe-CCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEe
Q 022278          242 QHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  293 (300)
Q Consensus       242 eh~~~iL~G~G~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  293 (300)
                      ++.+|||+|++.+.+ |+++..+++||++++|+|++|+|+|+|+.+ ++++..
T Consensus       271 ~e~~~vleG~~~~~i~~~~~~~l~~GD~~~vP~g~~h~~~~~~~~~-~~~~~~  322 (348)
T d1juha_         271 ACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEAYFS-KVLFVS  322 (348)
T ss_dssp             CEEEEEEESCEEEEETTSCCEEECTTCEEEECTTCCEEEEESSSSE-EEEEEE
T ss_pred             CEEEEEEeceEEEEeCCcceEEecCCCEEEECCCCcEEEEeCCCCc-EEEEEE
Confidence            999999999999999 568899999999999999999999999865 555553

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=8.7e-20  Score=172.80  Aligned_cols=192  Identities=17%  Similarity=0.220  Sum_probs=139.3

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE--EEeccCcEEEeCCCCceEEee-CCeEEEEEEEe
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS--SKLMVDSYTYLPPNFAHSLRA-EGSATLVVFER  176 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v--~gg~~--~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~  176 (300)
                      +.|....+.|.||+..++|-|...|..||++|++.+++  .+|+.  ..|++||.+|||+|..|.+.| ++.++++.+..
T Consensus        70 ~~~a~~~~~L~pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~H~i~n~~dg~e~l~vf~  149 (372)
T d1j58a_          70 ENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFD  149 (372)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEES
T ss_pred             hhhhheEEEECCCcCcCCcccCcccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEECCCCEEEEEeCCCCcEEEEEEC
Confidence            36888899999999998886777799999999999986  23554  459999999999999999998 67788887754


Q ss_pred             eccccCC----------CCccee-----------------------ec------------------------cCCCCCCc
Q 022278          177 RYASLEN----------HITEQI-----------------------VG------------------------STDKQPLL  199 (300)
Q Consensus       177 ~y~~~~g----------~~p~~~-----------------------~~------------------------~~~d~~~~  199 (300)
                      --.+...          .-|.-+                       .+                        +..+.++.
T Consensus       150 ~~~~~~~~~f~~~~~~~~~p~evLa~af~v~~~~~~~i~~~e~~i~~~~~p~~~~~~~~~~~~g~~~~~~~~~l~~q~P~  229 (372)
T d1j58a_         150 DGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPI  229 (372)
T ss_dssp             CTTCCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCCSSCSEEEGGGSCCE
T ss_pred             CCCcccccceeeccccccCCHHHHHHhhCCCHHHHhhccccccccccccCCCcchhhhccCCCCCCCCcceeeccccCCc
Confidence            2211110          000000                       00                        00111111


Q ss_pred             ccCCceeEEEEeeCCCC--CcceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEeCC-----EEEEccCCcEEEe
Q 022278          200 ETPGEVFQLRKLLPQAV--PFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGD-----SWYPVQAGDVLWM  271 (300)
Q Consensus       200 ~~~g~~~~~~~l~p~~~--~~~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~~g-----~~~~v~~GD~i~~  271 (300)
                      ...||.  .+.+.+++.  ..++.+.+++++||+.... |.|. .+|.+||++|+|.+.+.+     ..+.+++||++|+
T Consensus       230 ~~~gG~--~~~~d~~~fp~~~~is~~~~~l~PG~~~~~-H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~i  306 (372)
T d1j58a_         230 ESEGGK--VYIADSTNFKVSKTIASALVTVEPGAMREL-HWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYV  306 (372)
T ss_dssp             ECSSEE--EEEESTTTSTTCCSCEEEEEEECTTCEEEE-EECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEE
T ss_pred             ccCCcc--EEEeccccCCccCceeEEEEEECCCcccCC-CCCCCCcEEEEEEECeEEEEEEcCCCceEEEEecCCcEEEE
Confidence            222332  344555543  2478999999999999986 6675 468899999999998744     4689999999999


Q ss_pred             CCCCceeEEecCCccEEEEEEeecC
Q 022278          272 APFVPQWYAALGKTRTRYLLYKDVN  296 (300)
Q Consensus       272 ~~~~~H~~~n~G~e~~~fi~~kd~n  296 (300)
                      |.|.+|+++|+|+|+++||..-+-+
T Consensus       307 P~g~~H~i~N~g~e~l~~l~vf~s~  331 (372)
T d1j58a_         307 PFAMGHYVENIGDEPLVFLEIFKDD  331 (372)
T ss_dssp             CTTCBEEEEECSSSCEEEEEEESSS
T ss_pred             CCCCeEEEEECCCCCEEEEEEECCC
Confidence            9999999999999999999754433

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=99.81  E-value=1.5e-18  Score=163.28  Aligned_cols=191  Identities=15%  Similarity=0.191  Sum_probs=138.4

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEE-EEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEEeecc
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAML-TNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERRYA  179 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l-~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~y~  179 (300)
                      ..+...+..|.||...+.|.|..+++.||++|+... .+ +|+...+++||.+++|++..|...| .....++|+.--..
T Consensus        83 ~~l~~~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t~v-~ge~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~~D~  161 (355)
T d3bu7a1          83 GWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLDI  161 (355)
T ss_dssp             TTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEECH
T ss_pred             chhhhheEeeCCCCcCcccccccceeEEEEECCcEEEEE-CCEEEEeeCCCEEEeCCCceEeeecCCCCCcEEEEEecch
Confidence            357778889999999999999999999999999765 47 9999999999999999999999998 33333334321111


Q ss_pred             cc------------CCC------------------CcceeeccCC--CC-----CCcc--------------cCCceeEE
Q 022278          180 SL------------ENH------------------ITEQIVGSTD--KQ-----PLLE--------------TPGEVFQL  208 (300)
Q Consensus       180 ~~------------~g~------------------~p~~~~~~~~--d~-----~~~~--------------~~g~~~~~  208 (300)
                      |+            +..                  .+.......+  ..     |+.+              .+..++.+
T Consensus       162 Pl~~~l~~~f~e~~p~~~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~sp~~~ypw~~~~~al~~~~~~~~~~~~~g~~l  241 (355)
T d3bu7a1         162 PLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGSPYDGLIL  241 (355)
T ss_dssp             HHHHHTTCCCEEECTTSSCCCCCCTTHHHHHHCSTTEEESSCCCCCSSCSCCEECHHHHHHHHHHHHTTCCCBTTTBEEE
T ss_pred             HHHhhccceecccCchhcccccCCCccchhhhcccccccccccCCcccCcccccccccchHHHHHHHhcCCCCCCCceEE
Confidence            10            000                  0000000000  00     1111              11134455


Q ss_pred             EEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278          209 RKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       209 ~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      +...|...+   ..+.+....|+||..... |.|..++.+||++|+|.+.+||+.+++++||++++|++..|++.|+|++
T Consensus       242 ~y~nP~tg~~~~~ti~~~~~~l~pG~~~~~-hrH~~~~v~~v~~G~g~~~i~g~~~~~~~GDv~~vP~~~~h~~~N~s~~  320 (355)
T d3bu7a1         242 RYTNPQTGGHPMLTMGASMQMLRPGEHTKA-HRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDIFCVPAWTWHEHCNTQER  320 (355)
T ss_dssp             EECCTTTSSCSSSSCEEEEEEECTTCBCCC-EEESSCEEEEEEECCEEEEETTEEEEECTTCEEEECTTCCEEEEECCSS
T ss_pred             EeccccccCCCcceeeEEEEEECCCCccCC-cCccCcEEEEEEECcEEEEECCEEEEeeCCCEEEeCCCCcEEeecCCCC
Confidence            555565432   467888889999999986 7899999999999999999999999999999999999999999999987


Q ss_pred             cEEEE-EEee
Q 022278          286 RTRYL-LYKD  294 (300)
Q Consensus       286 ~~~fi-~~kd  294 (300)
                      +..|| .+.|
T Consensus       321 e~~~Lf~~~D  330 (355)
T d3bu7a1         321 DDACLFSFND  330 (355)
T ss_dssp             CCEEEEEEES
T ss_pred             CcEEEEEecC
Confidence            65555 4544

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=7.6e-20  Score=145.15  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=91.6

Q ss_pred             eeeccCCCCCCcccCC---ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEcc
Q 022278          188 QIVGSTDKQPLLETPG---EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQ  264 (300)
Q Consensus       188 ~~~~~~~d~~~~~~~g---~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~  264 (300)
                      +++.+..|++++.+..   .++..|.|++.+.+..+.|+.++|+||+.+|. |+|..+|.+|||+|++.++++|+++.++
T Consensus         1 ~i~~r~~~v~~~~i~~~~~~G~~~~~l~~~~~~~~~~~~~~~i~pG~~~~~-H~H~~~e~~~vl~G~~~~~~~~~~~~l~   79 (114)
T d1vj2a_           1 MILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDR-HSHPWEHEIFVLKGKLTVLKEQGEETVE   79 (114)
T ss_dssp             CEEEEGGGSCCEEECSSSEEEEEEEEEECTTTCSSEEEEEEEEEEEEEEEE-ECCSSCEEEEEEESEEEEECSSCEEEEE
T ss_pred             CEEEEhhhCCceeccccCCCCEEEEEEeCCCCCCceEEEEEEECCCCCCCc-eECCCcEEEEEEEceeEEEEeeeeeEEe
Confidence            3566677788877653   45677888876667778999999999999996 6888889999999999999999999999


Q ss_pred             CCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          265 AGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       265 ~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +||++|+++|++|++.|.|+++++|||.
T Consensus        80 ~Gd~~~ip~~~~H~~~n~~~~~~~~l~i  107 (114)
T d1vj2a_          80 EGFYIFVEPNEIHGFRNDTDSEVEFLCL  107 (114)
T ss_dssp             TTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             cCeEEEEcCCCeEEEEeCCCCCEEEEEE
Confidence            9999999999999999999999999996

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=99.78  E-value=1.6e-17  Score=155.92  Aligned_cols=189  Identities=12%  Similarity=0.077  Sum_probs=137.8

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEee---
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERR---  177 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~---  177 (300)
                      .+...+..|.||...+.|.|..++..||++|+..+++.+|+...+++||.+++|++..|...|  ++++.++++...   
T Consensus        86 ~l~~~~~~l~PGe~~~~H~H~~~~~~~vi~G~g~~t~v~g~~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~~d~pl~  165 (351)
T d2phda1          86 TMWAGIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLDIPFS  165 (351)
T ss_dssp             SCEEEEEEECTTCEEEEEEESSCEEEEEEECEEEEEEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEECHHHH
T ss_pred             hhhhheEEECCCCcCCccccccceeEEEEECCcEEEEECCEEEEEeCCCEEEeCCCceEEEEEcCCCCEEEEEeecCchh
Confidence            566778889999999889999999999999998654339999999999999999999999999  577888876422   


Q ss_pred             -c------cccCC---------------------CCcceeeccCCC-----CCCcc-------------------cCCce
Q 022278          178 -Y------ASLEN---------------------HITEQIVGSTDK-----QPLLE-------------------TPGEV  205 (300)
Q Consensus       178 -y------~~~~g---------------------~~p~~~~~~~~d-----~~~~~-------------------~~g~~  205 (300)
                       |      ++.+.                     ..|......-..     .++..                   ..++.
T Consensus       166 ~~l~~~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~sp~~~yp~~~~~~al~~~~~~~~~~~~~~~~~g~  245 (351)
T d2phda1         166 QQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRALTEQLLLEDEGQPATVAPGH  245 (351)
T ss_dssp             HHTTCCCEEECCC--CCCCCCSSCHHHHHHCSTTEEEGGGCSCCSSCSCSEECHHHHHHHHHHHHHHHHTTCSCSSBTTE
T ss_pred             hhcccccccccccccccccCCccchhhhhccccccCcccccccccCCCcccCchHHHHhhhhhhhhcccccccccccCcc
Confidence             0      00000                     000000000000     01100                   01133


Q ss_pred             eEEEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEec
Q 022278          206 FQLRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       206 ~~~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                      ..++...|.+.+   ..+.+....++||..... |.|..++.+||++|+|.+++||+....++||++++|++.+|++.|.
T Consensus       246 ~~l~yvnp~tg~~~~~t~~~~~~~l~pG~~~~~-hrh~~~~v~~vi~G~g~~~i~~~~~~~~~gDvf~vP~~~~h~~~n~  324 (351)
T d2phda1         246 AAIRYVNPTTGGDVMPTLRCEFHRLRAGTETAT-RNEVGSTVFQVFEGAGAVVMNGETTKLEKGDMFVVPSWVPWSLQAE  324 (351)
T ss_dssp             EEEEEBCTTTSSBSBTTBEEEEEEECTTCBCCC-EEESSCEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCEEEEES
T ss_pred             eeEEEeccccCCCcCCcceEEEEEecCCCcCCC-ccccCcEEEEEEeCcEEEEECCEEEEEcCCCEEEeCCCCcEEEecC
Confidence            345555565433   457778888999999875 7888889999999999999999999999999999999999999996


Q ss_pred             CCccEEEEEEee
Q 022278          283 GKTRTRYLLYKD  294 (300)
Q Consensus       283 G~e~~~fi~~kd  294 (300)
                      ++  ...+.+.|
T Consensus       325 ~~--~~Lf~~~D  334 (351)
T d2phda1         325 TQ--FDLFRFSD  334 (351)
T ss_dssp             SC--EEEEEEES
T ss_pred             CC--eEEEEECC
Confidence            54  45566655

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.75  E-value=4.9e-18  Score=131.54  Aligned_cols=91  Identities=13%  Similarity=0.102  Sum_probs=79.5

Q ss_pred             CCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcC--CCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCce
Q 022278           84 LPEWTNTLGAYLITPAMGSHFVMYLANMQENARS--ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH  161 (300)
Q Consensus        84 ~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~--~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H  161 (300)
                      +|+-++..+++|.+....+.|++++++++||+.+  ..|.|+.+|++|||+|++++.+ ++++++|++||+++||++.+|
T Consensus         2 f~~d~~~~~~~l~p~~~~~~~e~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~-~~~~~~l~~GD~~~~~~~~~H   80 (99)
T d1y9qa2           2 FPDDLNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF-DEQWHELQQGEHIRFFSDQPH   80 (99)
T ss_dssp             CTTCTTEEEEEEEEEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE-TTEEEEECTTCEEEEECSSSE
T ss_pred             cCCCCCeEEEEEecCCCcCCEEEEEEEEeCCcEeccccccCCcEEEEEEEcCceEEEe-cceEEEecCCCEEEECCCCeE
Confidence            4555667888888767778999999999999876  4456889999999999999999 999999999999999999999


Q ss_pred             EEee--CCeEEEEEEE
Q 022278          162 SLRA--EGSATLVVFE  175 (300)
Q Consensus       162 ~~~N--~~~a~vl~v~  175 (300)
                      .++|  ++++.++||.
T Consensus        81 ~~~n~~~~~~~~~vi~   96 (99)
T d1y9qa2          81 GYAAVTEKAVFQNIVA   96 (99)
T ss_dssp             EEEESSSCEEEEEEEE
T ss_pred             EEEeCCccCEEEEEEe
Confidence            9999  6788777773

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=1e-17  Score=133.01  Aligned_cols=88  Identities=19%  Similarity=0.268  Sum_probs=75.4

Q ss_pred             ceeEEEEeeC-CCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEe
Q 022278          204 EVFQLRKLLP-QAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA  281 (300)
Q Consensus       204 ~~~~~~~l~p-~~~~-~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n  281 (300)
                      |.+..+.++. ++.. ..+.+..++|+||+.+|.|.|+..+|.+||++|++.++++|+++++++||++++|+|++|+++|
T Consensus        21 G~~~~~~l~~~~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~g~~H~~~N  100 (115)
T d1o4ta_          21 GEVEMAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKDVPIKAGDVCFTDSGESHSIEN  100 (115)
T ss_dssp             SEEEEEECSCTTTTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCEEEEEC
T ss_pred             cEEEEEEecCccccCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEEcCeeEEeeccEEEEECCCCeEEEEE
Confidence            4556666664 4443 4577889999999999984444567899999999999999999999999999999999999999


Q ss_pred             cCCccEEEEE
Q 022278          282 LGKTRTRYLL  291 (300)
Q Consensus       282 ~G~e~~~fi~  291 (300)
                      +|++|++||+
T Consensus       101 ~g~~~~~~l~  110 (115)
T d1o4ta_         101 TGNTDLEFLA  110 (115)
T ss_dssp             CSSSCEEEEE
T ss_pred             CCCCCEEEEE
Confidence            9999999997

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=99.69  E-value=1.4e-16  Score=128.19  Aligned_cols=104  Identities=14%  Similarity=0.247  Sum_probs=81.8

Q ss_pred             eEeCCCCeeecc--CCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCC---CCCCceEEEEEEECEEEEEEc---CCc
Q 022278           72 ALITPESHVLSP--LPEWTNTLGAYLITPAMGSHFVMYLANMQENARSAL---PPHDVERFIFVVQGSAMLTNA---SGV  143 (300)
Q Consensus        72 av~~~e~~~~~~--~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~---~~h~gEEf~yVLeG~v~l~v~---gg~  143 (300)
                      .+.+++++....  ..+.....+..|+++...+.|.++++++.|++..+.   +.|++|||+|||+|++++.++   +++
T Consensus         7 ~i~r~der~~~~~~~~~~~~y~y~~L~~~~~~~~~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~   86 (122)
T d2bnma2           7 IIQMPDERPILKGVRDNVDYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK   86 (122)
T ss_dssp             CCCCGGGCCEECCSTTCSTTEEEEECCCCTTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE
T ss_pred             EEECCccceeeeeecCCCCcEEEEeccCCcCCCccEeEEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCE
Confidence            344555554332  222333567788888888999999999999987643   268999999999999999982   247


Q ss_pred             EEEeccCcEEEeCCCCceEEee---CCeEEEEEEE
Q 022278          144 SSKLMVDSYTYLPPNFAHSLRA---EGSATLVVFE  175 (300)
Q Consensus       144 ~~~L~~Gds~yfpa~~~H~~~N---~~~a~vl~v~  175 (300)
                      ++.|++||++|||++.+|+++|   ++++++|||.
T Consensus        87 ~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~~l~Vt  121 (122)
T d2bnma2          87 EALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVN  121 (122)
T ss_dssp             EEEECTTCEEEECTTCCEEEEESTTSCCEEEEEEE
T ss_pred             EEEEccCcEEEeCCCCCEEEEcCCCCccEEEEEEE
Confidence            8999999999999999999998   4689999984

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.69  E-value=9.8e-17  Score=124.10  Aligned_cols=88  Identities=16%  Similarity=0.150  Sum_probs=78.1

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCc-ceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEec
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV-KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~-~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                      +++.++.|.|.+....+.+..++|+||+.... .|+|..+|.+|||+|++.+.+||+++.+++||.++++++++|++.|.
T Consensus         6 ~~~~~~~l~p~~~~~~~e~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~   85 (99)
T d1y9qa2           6 LNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAV   85 (99)
T ss_dssp             TTEEEEEEEEEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTEEEEECTTCEEEEECSSSEEEEES
T ss_pred             CCeEEEEEecCCCcCCEEEEEEEEeCCcEeccccccCCcEEEEEEEcCceEEEecceEEEecCCCEEEECCCCeEEEEeC
Confidence            56788889997767789999999999986532 35678899999999999999999999999999999999999999999


Q ss_pred             CCccEEEEE
Q 022278          283 GKTRTRYLL  291 (300)
Q Consensus       283 G~e~~~fi~  291 (300)
                      |++++.+++
T Consensus        86 ~~~~~~~~v   94 (99)
T d1y9qa2          86 TEKAVFQNI   94 (99)
T ss_dssp             SSCEEEEEE
T ss_pred             CccCEEEEE
Confidence            999987755

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=2e-16  Score=129.42  Aligned_cols=90  Identities=20%  Similarity=0.291  Sum_probs=79.9

Q ss_pred             ceeEEEEeeC-CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe-CCEEEEccCCcEEEeCCCCceeEEe
Q 022278          204 EVFQLRKLLP-QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAA  281 (300)
Q Consensus       204 ~~~~~~~l~p-~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n  281 (300)
                      |.+.++.|++ ++...++.+.+++|+||+.++. |+|..++.+|||+|+|.+.+ |++++.+++||++|+|||++||..|
T Consensus        18 G~v~~~~L~~~~~~~~~~~~~~vtf~PG~~~~~-H~H~~~q~~~Vl~G~~~~~~~g~~~~~~~~Gd~v~ippg~~H~~~a   96 (134)
T d2f4pa1          18 GNVWVKMLVTDENGVFNTQVYDVVFEPGARTHW-HSHPGGQILIVTRGKGFYQERGKPARILKKGDVVEIPPNVVHWHGA   96 (134)
T ss_dssp             SCEEEEEEECCTTCSSSCEEEEEEECTTCEECS-EECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEEECTTCCEEEEE
T ss_pred             eeEEEeeccCCCCCCceeEEEEEEECCCCcCcc-ccCCCCEEEEEEeCEEEEEECCcceEEEcCCCeEEECCCCceECcc
Confidence            4568888885 4556789999999999999997 78899999999999999977 5577999999999999999999999


Q ss_pred             cCCccEEEEEEee
Q 022278          282 LGKTRTRYLLYKD  294 (300)
Q Consensus       282 ~G~e~~~fi~~kd  294 (300)
                      +++++++||+.-.
T Consensus        97 ~~~~~~~~lai~~  109 (134)
T d2f4pa1          97 APDEELVHIGIST  109 (134)
T ss_dssp             BTTBCEEEEEEEC
T ss_pred             CCCCcEEEEEEEe
Confidence            9999999998753

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.64  E-value=7.7e-16  Score=129.08  Aligned_cols=107  Identities=12%  Similarity=0.121  Sum_probs=90.7

Q ss_pred             ceeeccCCCCCCcccCCceeEEEEeeCC--CCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC------
Q 022278          187 EQIVGSTDKQPLLETPGEVFQLRKLLPQ--AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD------  258 (300)
Q Consensus       187 ~~~~~~~~d~~~~~~~g~~~~~~~l~p~--~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g------  258 (300)
                      ..+|++++++|.......++..+.+...  .....+.+.+.+++||+.+|. |+|..+|.+|||+|+|.+.++|      
T Consensus         6 ~~~vr~i~~~~~~~~g~~g~~~~~~~~~~~~g~~~i~v~~~~l~PG~~~~~-H~H~~~e~~~Vl~G~g~~~i~~~~~~~~   84 (160)
T d1lr5a_           6 NSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPI-HRHSCEEVFTVLKGKGTLLMGSSSLKYP   84 (160)
T ss_dssp             CCSEEEGGGSCCBCTTCTTEEEEEEECHHHHCCSSEEEEEEEECTTCBCCE-EEESSCEEEEEEECCEEEEECCSSSSSC
T ss_pred             chhhcchhhCcccccCCCCceEEEeecccCCCccEEEEEEEEECCCccccc-eeccccEEEEEEeeeEEEEECCcccccc
Confidence            4578899998888775545455555542  234678999999999999997 5889999999999999999998      


Q ss_pred             ---EEEEccCCcEEEeCCCCceeEEecCC-ccEEEEEEee
Q 022278          259 ---SWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLLYKD  294 (300)
Q Consensus       259 ---~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~~kd  294 (300)
                         +++++++||++++|+|++|++.|+|+ |+++||+..+
T Consensus        85 ~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l~~l~i~~  124 (160)
T d1lr5a_          85 GQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIIS  124 (160)
T ss_dssp             CSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEE
T ss_pred             ccceEEEecCCCEEEeCCCCcEEEEECCCCCCEEEEEEEC
Confidence               78999999999999999999999997 8999998764

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=3.8e-16  Score=122.80  Aligned_cols=84  Identities=13%  Similarity=0.221  Sum_probs=73.8

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCE-EEEccCCcEEEeCCCCceeEEecCCc
Q 022278          207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS-WYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~-~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      ..+.|+..+   ++.+..++|+||..+|. |.|..++.+|||+|+|.++++|+ ++++++||++++|+|++|+++|.|++
T Consensus        16 ~~~~l~~~~---~~~v~~~~l~pG~~~p~-H~H~~~e~~~Vl~G~~~~~v~~~e~~~v~~Gd~i~ip~~~~H~~~n~~~e   91 (108)
T d2b8ma1          16 VVEKLVNTE---HVQINHIVLPRGEQMPK-HYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYVPFNVKMLIQNINSD   91 (108)
T ss_dssp             EEEEEEECS---SCEEEEEEEETTCBCCC-EECSSCEEEEEEESEEEEEETTSCCEEEETTCEEEECTTCEEEEECCSSS
T ss_pred             EEEEEEcCC---CEEEEEEEECCCCcChh-hcccccEEEEEEeeeEEEEEecccEEEeecceEeeccCCceEEEEcCCCC
Confidence            455566443   46788999999999997 67778889999999999999995 69999999999999999999999999


Q ss_pred             cEEEEEEee
Q 022278          286 RTRYLLYKD  294 (300)
Q Consensus       286 ~~~fi~~kd  294 (300)
                      +++||+.+.
T Consensus        92 ~l~~l~v~~  100 (108)
T d2b8ma1          92 ILEFFVVKA  100 (108)
T ss_dssp             EEEEEEEEC
T ss_pred             cEEEEEEEC
Confidence            999999864

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=6.6e-16  Score=122.04  Aligned_cols=86  Identities=20%  Similarity=0.266  Sum_probs=79.7

Q ss_pred             cceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--C
Q 022278           89 NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--E  166 (300)
Q Consensus        89 ~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~  166 (300)
                      +...++|+++..+.+|.+.+++++||+..+.|.|+.+|++||++|++++++ +|+++.|++||++|+|++.+|+++|  +
T Consensus        21 G~~~~~l~~~~~~~~~~~~~~~i~pG~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~n~~~   99 (114)
T d1vj2a_          21 GVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK-EQGEETVEEGFYIFVEPNEIHGFRNDTD   99 (114)
T ss_dssp             EEEEEEEECTTTCSSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC-SSCEEEEETTEEEEECTTCCEEEECCSS
T ss_pred             CEEEEEEeCCCCCCceEEEEEEECCCCCCCceECCCcEEEEEEEceeEEEE-eeeeeEEecCeEEEEcCCCeEEEEeCCC
Confidence            466778888887788999999999999998889999999999999999999 9999999999999999999999998  6


Q ss_pred             CeEEEEEEE
Q 022278          167 GSATLVVFE  175 (300)
Q Consensus       167 ~~a~vl~v~  175 (300)
                      +++++|++.
T Consensus       100 ~~~~~l~ii  108 (114)
T d1vj2a_         100 SEVEFLCLI  108 (114)
T ss_dssp             SCEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            899999985

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.62  E-value=7.3e-16  Score=124.51  Aligned_cols=121  Identities=13%  Similarity=0.104  Sum_probs=89.1

Q ss_pred             ecCCCCChhhhhcccCCcceeeeeeeeEeCCCCeeeccCC--CCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCC
Q 022278           46 VTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLP--EWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHD  123 (300)
Q Consensus        46 ver~~~sps~I~~~lg~trs~f~~~~av~~~e~~~~~~~p--~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~  123 (300)
                      ||||.++|| |..+.+..--.      +++.++.....+.  .........++.+..+..|...+++++||..  ++.|.
T Consensus         1 iE~g~~~Ps-~~sl~~~~~~~------vv~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~   71 (128)
T d2pyta1           1 LELGTMQPS-FTSVTGKGGVK------VIDGSSVKFGRFDGAEPHCVGLTDLVTEQDGSSMAAGFMQWDNAFF--PWTLN   71 (128)
T ss_dssp             CTTSCCCCB-CCEEECTTSCE------EECGGGCBCEECGGGTTSCCEEEEEECGGGTCSSEEEEEEEEEEEE--EEECS
T ss_pred             CccCccccc-EEeecCcCCcE------EEcCCcccceeecCCCCCceEEEEEEEcCCCCceEEEEEEECCCcc--ceeCC
Confidence            799999999 66555433111      2222221111111  1112345667777777789999999999842  23689


Q ss_pred             ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEe
Q 022278          124 VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER  176 (300)
Q Consensus       124 gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~  176 (300)
                      .||++|||+|++++++ +|+++.|++||++|||+|.+|+|+|.+.+++++|..
T Consensus        72 ~~E~~~vl~G~~~~~~-~g~~~~l~~Gd~~~~p~g~~h~~~~~~~~~~~~v~~  123 (128)
T d2pyta1          72 YDEIDMVLEGELHVRH-EGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYVAW  123 (128)
T ss_dssp             SEEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             ccEEEEEEEeEEEEEE-CCEEEEecCCCEEEECCCCEEEEEeCCCEEEEEEEC
Confidence            9999999999999999 999999999999999999999999988899988854

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=8.7e-16  Score=118.68  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=67.5

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      ++.+.+++++||+.++.|.|+..++.+|||+|++.+.++|+++.+++||++++++|++|++.|.|+++++||..
T Consensus        27 ~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v  100 (105)
T d1v70a_          27 RMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVV  100 (105)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             CEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEEeeeEEEecceEEEEeCCCCEEEeEECCCCCEEEEEE
Confidence            47788999999999997544455789999999999999999999999999999999999999999999999864

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.52  E-value=5.2e-14  Score=110.64  Aligned_cols=86  Identities=16%  Similarity=0.256  Sum_probs=73.1

Q ss_pred             ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      +.+..+.|+..+   ...+..++|+||..++. |+|..++.+|||+|+|.+.++|+++++++||++|+|+|++|+++|.+
T Consensus        24 ~~~~~~~l~~~~---~~~i~~~~~~~G~~~~~-H~h~~~~~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~a~~   99 (112)
T d1yhfa1          24 DQMLSRTLVQRQ---DLGITVFSLDKGQEIGR-HSSPGDAMVTILSGLAEITIDQETYRVAEGQTIVMPAGIPHALYAVE   99 (112)
T ss_dssp             TCEEEEEEEEET---TEEEEEEEECTTCEEEE-ECCSSEEEEEEEESEEEEEETTEEEEEETTCEEEECTTSCEEEEESS
T ss_pred             CCEEEEEEEECC---CcEEEEEEECCCCCcce-EECCCCEEEEEEeCEEEEEEccEEEEecCCEEEEcCCCCeEEeEECC
Confidence            444556666432   45678899999999996 78888999999999999999999999999999999999999999998


Q ss_pred             CccEEEEEEe
Q 022278          284 KTRTRYLLYK  293 (300)
Q Consensus       284 ~e~~~fi~~k  293 (300)
                      +..+..++.|
T Consensus       100 ~~~~l~~vi~  109 (112)
T d1yhfa1         100 AFQMLLVVVK  109 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CcEEEEEEEC
Confidence            7777777665

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.49  E-value=3.9e-14  Score=126.53  Aligned_cols=95  Identities=19%  Similarity=0.202  Sum_probs=82.4

Q ss_pred             cCC-ceeEEEEeeCCCCCcceEEEEEEecCCcccCcc-eeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCcee
Q 022278          201 TPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK-EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW  278 (300)
Q Consensus       201 ~~g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~-~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~  278 (300)
                      .++ +++.++.|.+.+++..|.+.+++++||+....+ |+|..||.+|||+|++.+++||+.+.+++||++|+++|++|.
T Consensus        28 ~P~~~~~~~~~L~sp~~Ga~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~  107 (250)
T d1sefa_          28 VPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMY  107 (250)
T ss_dssp             CTTEEEEEEEECSCGGGTCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSCEEEEETTEEEEECTTSCCE
T ss_pred             CCCcCcEEEEEEcCcccCCcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEECCEEEEEcCCCEEEEcCCCcEE
Confidence            345 666777787666677788899999999986543 456678889999999999999999999999999999999999


Q ss_pred             EEecCCccEEEEEEeec
Q 022278          279 YAALGKTRTRYLLYKDV  295 (300)
Q Consensus       279 ~~n~G~e~~~fi~~kd~  295 (300)
                      +.|.|+++++|+++|..
T Consensus       108 ~~N~~~~~~~~l~v~~~  124 (250)
T d1sefa_         108 LANAQEADTEVFLYKKR  124 (250)
T ss_dssp             EEESSSSCEEEEEEEEE
T ss_pred             EEECCCCCEEEEEEEEe
Confidence            99999999999999764

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.49  E-value=7.8e-14  Score=109.29  Aligned_cols=75  Identities=11%  Similarity=0.144  Sum_probs=67.6

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCc-EEEeccCcEEEeCCCCceEEee--CCeEEEEEEEee
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGV-SSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERR  177 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~-~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~  177 (300)
                      .++....++++||+..+.|.|+.++++|||+|++++++ +|+ ++.+++||++++|++.+|+++|  ++++++++|..+
T Consensus        24 ~~~~v~~~~l~pG~~~p~H~H~~~e~~~Vl~G~~~~~v-~~~e~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v~~P  101 (108)
T d2b8ma1          24 EHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL-EDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAP  101 (108)
T ss_dssp             SSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEE-TTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECS
T ss_pred             CCEEEEEEEECCCCcChhhcccccEEEEEEeeeEEEEE-ecccEEEeecceEeeccCCceEEEEcCCCCcEEEEEEECC
Confidence            46788899999999998888899999999999999999 775 6899999999999999999999  678999998544

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=8.5e-14  Score=107.22  Aligned_cols=76  Identities=13%  Similarity=0.261  Sum_probs=68.2

Q ss_pred             CCcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEee
Q 022278          101 GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERR  177 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~  177 (300)
                      +.++.+.+++++||+..+.|.|. .+|++||++|++++.+ +|+++.|++||++++|++.+|+++|  +++++++++..+
T Consensus        25 ~~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v~~P  103 (105)
T d1v70a_          25 SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV-GEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAP  103 (105)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE-TTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred             CCCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE-eeeEEEecceEEEEeCCCCEEEeEECCCCCEEEEEEECC
Confidence            35688899999999998888765 5899999999999999 9999999999999999999999999  688999998543

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=3.2e-13  Score=106.52  Aligned_cols=82  Identities=10%  Similarity=0.207  Sum_probs=69.0

Q ss_pred             EEEecCCC--CCcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CC
Q 022278           93 AYLITPAM--GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EG  167 (300)
Q Consensus        93 ~~L~sp~~--g~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~  167 (300)
                      ..+.....  ++.+....++++||+..+.|.|. .+|++||++|++++++ +|+++.+++||++|+|++.+|+++|  ++
T Consensus        26 ~~l~~~~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~g~~H~~~N~g~~  104 (115)
T d1o4ta_          26 AHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD-NGKDVPIKAGDVCFTDSGESHSIENTGNT  104 (115)
T ss_dssp             EECSCTTTTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE-TTEEEEEETTEEEEECTTCEEEEECCSSS
T ss_pred             EEecCccccCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEE-cCeeEEeeccEEEEECCCCeEEEEECCCC
Confidence            34554432  34555568899999998888776 4899999999999999 9999999999999999999999999  67


Q ss_pred             eEEEEEEE
Q 022278          168 SATLVVFE  175 (300)
Q Consensus       168 ~a~vl~v~  175 (300)
                      ++++++|.
T Consensus       105 ~~~~l~I~  112 (115)
T d1o4ta_         105 DLEFLAVI  112 (115)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEE
Confidence            89988874

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.44  E-value=7.5e-13  Score=117.78  Aligned_cols=92  Identities=8%  Similarity=0.110  Sum_probs=79.2

Q ss_pred             CCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEE
Q 022278           85 PEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL  163 (300)
Q Consensus        85 p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~  163 (300)
                      ++.++...+.+.+...+..|.+.+++++||+..+.+ .|..||++|||+|++.+.+ ||+.+.+++||++|+|++++|.+
T Consensus       146 ~~~~~~~~r~l~p~~~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i-~~~~~~v~~GD~i~~~~~~~H~~  224 (245)
T d1sfna_         146 EGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-EENYYPVTAGDIIWMGAHCPQWY  224 (245)
T ss_dssp             TSCTTEEEEECSCCCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE-TTEEEEEETTCEEEECTTCCEEE
T ss_pred             ccccceEEEecCCcccccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE-CCEEEEecCCCEEEECCCCCEee
Confidence            444444455555556678999999999999988776 6999999999999999999 99999999999999999999999


Q ss_pred             ee--CCeEEEEEEEee
Q 022278          164 RA--EGSATLVVFERR  177 (300)
Q Consensus       164 ~N--~~~a~vl~v~~~  177 (300)
                      .|  ++++++|.++..
T Consensus       225 ~n~g~~~~~~l~~k~~  240 (245)
T d1sfna_         225 GALGRNWSKYLLYKDM  240 (245)
T ss_dssp             EEESSSCEEEEEEEEC
T ss_pred             EeCCCCCEEEEEEecC
Confidence            99  789999988654

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.44  E-value=1.2e-13  Score=115.44  Aligned_cols=87  Identities=15%  Similarity=0.221  Sum_probs=74.2

Q ss_pred             cceEEEEecCC-CC-CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC---------cEEEeccCcEEEeCC
Q 022278           89 NTLGAYLITPA-MG-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG---------VSSKLMVDSYTYLPP  157 (300)
Q Consensus        89 ~~~~~~L~sp~-~g-~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg---------~~~~L~~Gds~yfpa  157 (300)
                      +.....++++. .| +.+++++.+++||+.++.|.|+.+|++|||+|++++++ +|         +++.|++||++|+|+
T Consensus        24 g~~~~~~~~~~~~g~~~i~v~~~~l~PG~~~~~H~H~~~e~~~Vl~G~g~~~i-~~~~~~~~~~~~~~~l~~Gd~~~iP~  102 (160)
T d1lr5a_          24 GLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLM-GSSSLKYPGQPQEIPFFQNTTFSIPV  102 (160)
T ss_dssp             TEEEEEEECHHHHCCSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEE-CCSSSSSCCSCEEEEECTTEEEEECT
T ss_pred             CceEEEeecccCCCccEEEEEEEEECCCccccceeccccEEEEEEeeeEEEEE-CCccccccccceEEEecCCCEEEeCC
Confidence            34455555543 35 68999999999999998888999999999999999999 66         679999999999999


Q ss_pred             CCceEEee--C-CeEEEEEEEe
Q 022278          158 NFAHSLRA--E-GSATLVVFER  176 (300)
Q Consensus       158 ~~~H~~~N--~-~~a~vl~v~~  176 (300)
                      +.+|+++|  + +++++|++..
T Consensus       103 ~~~H~~~N~g~~E~l~~l~i~~  124 (160)
T d1lr5a_         103 NDPHQVWNSDEHEDLQVLVIIS  124 (160)
T ss_dssp             TCCEEEECCCSSSCEEEEEEEE
T ss_pred             CCcEEEEECCCCCCEEEEEEEC
Confidence            99999998  3 6899998844

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=3.2e-13  Score=120.49  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=80.9

Q ss_pred             cCC-ceeEEEEeeCCCCCcceEEEEEEecCCcccCcc-eeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCcee
Q 022278          201 TPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK-EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW  278 (300)
Q Consensus       201 ~~g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~-~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~  278 (300)
                      ++| .++..+.|.+.+.+..|.+..++++||+....+ |+|..|+.+|||+|++.+.++|+.+.+++||++|++++++|+
T Consensus        31 ~P~~~~~~~~~l~sp~~g~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~  110 (253)
T d1rc6a_          31 IPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMT  110 (253)
T ss_dssp             CTTEEEEEEEECCCGGGTCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCCCE
T ss_pred             CCCCCCeeEEEEeCcccCCceEEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEECCEEEEECCCCEEEECCCCCEE
Confidence            445 555677777777777888889999999876554 445678889999999999999999999999999999999999


Q ss_pred             EEecCCccEEEEEEee
Q 022278          279 YAALGKTRTRYLLYKD  294 (300)
Q Consensus       279 ~~n~G~e~~~fi~~kd  294 (300)
                      +.|.|+++++|+.++.
T Consensus       111 ~~N~~~~~~~~l~v~~  126 (253)
T d1rc6a_         111 FVNAQAEDSQIFLYKR  126 (253)
T ss_dssp             EEECSSSCEEEEEEEE
T ss_pred             EEECCCCCEEEEEEEe
Confidence            9999999999999864

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.43  E-value=2.6e-13  Score=109.22  Aligned_cols=100  Identities=16%  Similarity=0.128  Sum_probs=79.1

Q ss_pred             eccCCCCCCcccCC---ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCC
Q 022278          190 VGSTDKQPLLETPG---EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAG  266 (300)
Q Consensus       190 ~~~~~d~~~~~~~g---~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~G  266 (300)
                      +-+.++++...+++   .....+.++..+....+.+.+++++||..   ++||..+|.+|||+|++.+.+||+++.+++|
T Consensus        21 vv~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~E~~~vl~G~~~~~~~g~~~~l~~G   97 (128)
T d2pyta1          21 VIDGSSVKFGRFDGAEPHCVGLTDLVTEQDGSSMAAGFMQWDNAFF---PWTLNYDEIDMVLEGELHVRHEGETMIAKAG   97 (128)
T ss_dssp             EECGGGCBCEECGGGTTSCCEEEEEECGGGTCSSEEEEEEEEEEEE---EEECSSEEEEEEEEEEEEEEETTEEEEEETT
T ss_pred             EEcCCcccceeecCCCCCceEEEEEEEcCCCCceEEEEEEECCCcc---ceeCCccEEEEEEEeEEEEEECCEEEEecCC
Confidence            34455666666543   34456666655445667888899999863   5788899999999999999999999999999


Q ss_pred             cEEEeCCCCceeEEecCCccEEEEEE
Q 022278          267 DVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       267 D~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      |++|+|+|.+|.+.|.++..+-|++|
T Consensus        98 d~~~~p~g~~h~~~~~~~~~~~~v~~  123 (128)
T d2pyta1          98 DVMFIPKGSSIEFGTPTSVRFLYVAW  123 (128)
T ss_dssp             CEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             CEEEECCCCEEEEEeCCCEEEEEEEC
Confidence            99999999999999988766666654

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.42  E-value=3.7e-13  Score=121.78  Aligned_cols=98  Identities=13%  Similarity=0.115  Sum_probs=80.4

Q ss_pred             cccCC-ceeEEEEeeCCCCC--cceEEEEEEecCCcccCcc-eeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCC
Q 022278          199 LETPG-EVFQLRKLLPQAVP--FDFNIHIMDFQPGDFLNVK-EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPF  274 (300)
Q Consensus       199 ~~~~g-~~~~~~~l~p~~~~--~~~~~~~~tl~PG~~~p~~-~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~  274 (300)
                      ...++ .+++...|.....+  ..|.+.+++++||+....+ +++..|+.+|||+|++.+++||+++.+++||++|+|+|
T Consensus        42 s~lP~w~~~~~~vl~~p~~G~a~~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~~g~~~~L~~Gd~~y~P~g  121 (273)
T d1sq4a_          42 SHLPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAMQPGGYAFIPPG  121 (273)
T ss_dssp             BCCTTCEEEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSCEEEECTTEEEEECTT
T ss_pred             ecCCCCCCceEEEECCcccCCCcceEEEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEECCEEEEecCCCEEEECCC
Confidence            33466 55555556644444  5799999999999865443 45567889999999999999999999999999999999


Q ss_pred             CceeEEecCCccEEEEEEeecC
Q 022278          275 VPQWYAALGKTRTRYLLYKDVN  296 (300)
Q Consensus       275 ~~H~~~n~G~e~~~fi~~kd~n  296 (300)
                      ++|++.|.|+++++|+++|...
T Consensus       122 ~~h~~~N~g~~~a~~l~i~k~y  143 (273)
T d1sq4a_         122 ADYKVRNTTGQHTRFHWIRKHY  143 (273)
T ss_dssp             CCEEEECCSSSCEEEEEEEEEC
T ss_pred             CcEeeeecCCCCEEEEEEEecc
Confidence            9999999999999999987543

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.40  E-value=7.6e-13  Score=103.82  Aligned_cols=73  Identities=10%  Similarity=0.162  Sum_probs=66.9

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  175 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~  175 (300)
                      .++.+.++.++||...+.|.|++++++||++|++++++ +|+++.|++||++++|++.+|.++|.++.+++++.
T Consensus        35 ~~~~i~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~a~~~~~~l~~v  107 (112)
T d1yhfa1          35 QDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-DQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLVV  107 (112)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-TTEEEEEETTCEEEECTTSCEEEEESSCEEEEEEE
T ss_pred             CCcEEEEEEECCCCCcceEECCCCEEEEEEeCEEEEEE-ccEEEEecCCEEEEcCCCCeEEeEECCCcEEEEEE
Confidence            46677889999999888888999999999999999999 99999999999999999999999998888877764

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=4e-12  Score=103.41  Aligned_cols=85  Identities=18%  Similarity=0.221  Sum_probs=73.7

Q ss_pred             ceEEEEecCCCC-CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--C
Q 022278           90 TLGAYLITPAMG-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--E  166 (300)
Q Consensus        90 ~~~~~L~sp~~g-~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~  166 (300)
                      .....|+++..+ ..+.+..++++||+.+..|.|..++++|||+|++.+.+.|++.+.+++||++|+|||++|...|  +
T Consensus        20 v~~~~L~~~~~~~~~~~~~~vtf~PG~~~~~H~H~~~q~~~Vl~G~~~~~~~g~~~~~~~~Gd~v~ippg~~H~~~a~~~   99 (134)
T d2f4pa1          20 VWVKMLVTDENGVFNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKGDVVEIPPNVVHWHGAAPD   99 (134)
T ss_dssp             EEEEEEECCTTCSSSCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEEECTTCCEEEEEBTT
T ss_pred             EEEeeccCCCCCCceeEEEEEEECCCCcCccccCCCCEEEEEEeCEEEEEECCcceEEEcCCCeEEECCCCceECccCCC
Confidence            455667776655 6899999999999999999999999999999999998834556899999999999999998876  6


Q ss_pred             CeEEEEEE
Q 022278          167 GSATLVVF  174 (300)
Q Consensus       167 ~~a~vl~v  174 (300)
                      ++++.|.+
T Consensus       100 ~~~~~lai  107 (134)
T d2f4pa1         100 EELVHIGI  107 (134)
T ss_dssp             BCEEEEEE
T ss_pred             CcEEEEEE
Confidence            78888887

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.4e-12  Score=119.42  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=70.7

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEE-EeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY-RLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  295 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~-~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~  295 (300)
                      ..+.+.+.+++||+.++. |.|..++.+|||+|+|.+ .+||+.+++++||++++|+|++|++.|+|++++.||.+.|.
T Consensus        52 ~~l~~~~~~l~PG~~~~~-H~H~~~e~~~vl~G~g~~t~~~~~~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~~d~  129 (308)
T d2d40a1          52 ATLYAGLQLIMPGEVAPS-HRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDL  129 (308)
T ss_dssp             SSCEEEEEEECTTCEEEE-EEESSCEEEEEEECSSCEEEETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECH
T ss_pred             ccceeeeEEECCCCcccc-ccCchhheEEEEEeeEEEEEecCEEEEecCCCEEEeCCCceEEeEECCCCCEEEEEEecc
Confidence            468889999999999997 677889999999999987 47999999999999999999999999999999999998763

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.33  E-value=4.4e-12  Score=108.85  Aligned_cols=81  Identities=17%  Similarity=0.301  Sum_probs=66.7

Q ss_pred             CCCCCcceEEEEEEecCCcccC--------cceeeccceEEEEEEeeEEEEeC-----CEEEEccCCcEEEeCCCCceeE
Q 022278          213 PQAVPFDFNIHIMDFQPGDFLN--------VKEVHYNQHGLLLLEGQGIYRLG-----DSWYPVQAGDVLWMAPFVPQWY  279 (300)
Q Consensus       213 p~~~~~~~~~~~~tl~PG~~~p--------~~~~H~~eh~~~iL~G~G~~~~~-----g~~~~v~~GD~i~~~~~~~H~~  279 (300)
                      +.+...++.+.+.+++||..-+        +|.|...+|.+|||+|+|.+.++     ++++++++||++++|+|+.|.+
T Consensus        60 ~~~~~~~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~  139 (190)
T d1x82a_          60 QEEKEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRT  139 (190)
T ss_dssp             CCSCTTCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEE
T ss_pred             cCcCCCCeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEe
Confidence            4455678899999999996433        22222467899999999999984     3678999999999999999999


Q ss_pred             EecCCccEEEEEEe
Q 022278          280 AALGKTRTRYLLYK  293 (300)
Q Consensus       280 ~n~G~e~~~fi~~k  293 (300)
                      .|+|+++|+|++.=
T Consensus       140 ~N~Gde~L~~l~v~  153 (190)
T d1x82a_         140 VNIGDEPFIFLAIY  153 (190)
T ss_dssp             EECSSSCEEEEEEE
T ss_pred             EECCCCCEEEEEEE
Confidence            99999999999864

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=99.27  E-value=2.5e-11  Score=96.82  Aligned_cols=86  Identities=15%  Similarity=0.216  Sum_probs=71.9

Q ss_pred             eEEEEeeCCCCCcceEEEEEEecCCcccC--cceeeccceEEEEEEeeEEEEeC----CEEEEccCCcEEEeCCCCceeE
Q 022278          206 FQLRKLLPQAVPFDFNIHIMDFQPGDFLN--VKEVHYNQHGLLLLEGQGIYRLG----DSWYPVQAGDVLWMAPFVPQWY  279 (300)
Q Consensus       206 ~~~~~l~p~~~~~~~~~~~~tl~PG~~~p--~~~~H~~eh~~~iL~G~G~~~~~----g~~~~v~~GD~i~~~~~~~H~~  279 (300)
                      ...+.|.+......|..-+++++|++...  .+++|..||.+|||+|+..++++    ++++.+++||.+++++++||++
T Consensus        27 y~y~~L~~~~~~~~~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~~pH~~  106 (122)
T d2bnma2          27 YVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAF  106 (122)
T ss_dssp             EEEEECCCCTTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEE
T ss_pred             EEEEeccCCcCCCccEeEEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCEEEEEccCcEEEeCCCCCEEE
Confidence            35566767666678888899999998653  34567888999999999999974    5899999999999999999999


Q ss_pred             Eec-CCccEEEEE
Q 022278          280 AAL-GKTRTRYLL  291 (300)
Q Consensus       280 ~n~-G~e~~~fi~  291 (300)
                      .|. |+++.++|+
T Consensus       107 ~n~~g~~~a~~l~  119 (122)
T d2bnma2         107 TAAKGTGSAKLIA  119 (122)
T ss_dssp             EESTTSCCEEEEE
T ss_pred             EcCCCCccEEEEE
Confidence            996 899988875

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.17  E-value=3.9e-11  Score=110.28  Aligned_cols=84  Identities=20%  Similarity=0.273  Sum_probs=69.2

Q ss_pred             EEEee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCcc
Q 022278          208 LRKLL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR  286 (300)
Q Consensus       208 ~~~l~-p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  286 (300)
                      .+.+. +.+.+..+.+..++++||+..+.|.|+..+|.+|||+|++.++++|+++.+++||++++|++++|++.|.|++ 
T Consensus        29 ~~~~~~~~~t~~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~-  107 (330)
T d1y3ta1          29 ATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGERYLLISGDYANIPAGTPHSYRMQSHR-  107 (330)
T ss_dssp             EEEEECHHHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCEEEEECSTT-
T ss_pred             EEEEEeccCCCCcEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEECCEEEEEcCCCEEEeCCCCeEEEEEcCCC-
Confidence            34444 4444556888899999999999754445678999999999999999999999999999999999999999985 


Q ss_pred             EEEEEE
Q 022278          287 TRYLLY  292 (300)
Q Consensus       287 ~~fi~~  292 (300)
                      .++++.
T Consensus       108 ~~~l~~  113 (330)
T d1y3ta1         108 TRLVSY  113 (330)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            455544

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.11  E-value=1.2e-10  Score=97.97  Aligned_cols=75  Identities=16%  Similarity=0.228  Sum_probs=66.8

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe----CCEEEEccCCcEEEeCCCCceeEEecCC-ccEEEEEEe
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLLYK  293 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~~k  293 (300)
                      ++.+.+++++||+.+..| |+..++.+||++|+|++.+    +.+.+.+++||++++|+|.+||+.|+|+ +.++.+++.
T Consensus        43 ~~~v~~~~i~p~~~~~Ph-~~~a~ei~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~vP~G~~h~~~n~~~~~~l~iv~~~  121 (170)
T d1uija1          43 DYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLA  121 (170)
T ss_dssp             TCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             heEEEEEEecCCcccccc-cCCCCEEEEEEEEEEEEEEEeCCCcEEEEecCCcEEEECCCCeEEEEEcCCCCcEEEEEec
Confidence            588999999999998865 5667789999999999987    6688999999999999999999999987 678888887


Q ss_pred             e
Q 022278          294 D  294 (300)
Q Consensus       294 d  294 (300)
                      +
T Consensus       122 ~  122 (170)
T d1uija1         122 I  122 (170)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.05  E-value=2.8e-10  Score=98.35  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=66.3

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe----CCEEEEccCCcEEEeCCCCceeEEecCC-ccEEEEEEe
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLLYK  293 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~~k  293 (300)
                      ++.+..++++||+.+-.| |+..++.+||++|+|++.+    +-+.+.+++||++++|+|.+||+.|+|+ +++.++++.
T Consensus        39 ~~~v~~~~i~p~~l~~Ph-~~~a~ev~yV~~G~g~~~~v~~~~~~~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~  117 (203)
T d1uika1          39 DYRILEFNSKPNTLLLPH-HADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLA  117 (203)
T ss_dssp             TCEEEEEEECSSEEEEEE-EESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             ceEEEEEEecCCCccccc-cCCCcEEEEEEEEEEEEEEEeCCCeEEEEecCCCEEEECCCCeEEEEECCCCccEEEEEEe
Confidence            578889999999988765 5667789999999999987    5578999999999999999999999987 789999987


Q ss_pred             e
Q 022278          294 D  294 (300)
Q Consensus       294 d  294 (300)
                      |
T Consensus       118 ~  118 (203)
T d1uika1         118 I  118 (203)
T ss_dssp             E
T ss_pred             c
Confidence            6

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.04  E-value=4.6e-10  Score=94.95  Aligned_cols=76  Identities=22%  Similarity=0.303  Sum_probs=66.2

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe----CCEEEEccCCcEEEeCCCCceeEEecCC-ccEEEEEEe
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLLYK  293 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~~k  293 (300)
                      ++.+.+++++||+-+..| |..-.+.+||++|+|++.+    +-..+.+++||++++|+|.+||+.|+|+ +++.++++.
T Consensus        40 ~~~v~~~~i~p~~l~~Ph-~~~a~ev~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~  118 (178)
T d1dgwa_          40 DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFA  118 (178)
T ss_dssp             TEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEE
T ss_pred             ceEEEEEEecCCcccccc-cCCCCEEEEEEEeEEEEEEecCCceEEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEe
Confidence            588889999999999875 4455679999999999987    3467899999999999999999999866 799999998


Q ss_pred             ec
Q 022278          294 DV  295 (300)
Q Consensus       294 d~  295 (300)
                      |.
T Consensus       119 ~~  120 (178)
T d1dgwa_         119 IT  120 (178)
T ss_dssp             EC
T ss_pred             cC
Confidence            74

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=99.03  E-value=4.6e-10  Score=104.43  Aligned_cols=76  Identities=13%  Similarity=0.104  Sum_probs=69.3

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEE-eCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEee
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR-LGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~-~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd  294 (300)
                      ..+...+..+.||...+. |.|..++.+||++|+|.++ +||+..++++||++++|++++|++.|.|++++.++.+-|
T Consensus        85 ~~l~~~~~~l~PGe~~~~-H~H~~~~~~~vi~G~g~~t~v~g~~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~~d  161 (351)
T d2phda1          85 PTMWAGIQYLGPRETAPE-HRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLD  161 (351)
T ss_dssp             SSCEEEEEEECTTCEEEE-EEESSCEEEEEEECEEEEEEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEEC
T ss_pred             chhhhheEEECCCCcCCc-cccccceeEEEEECCcEEEEECCEEEEEeCCCEEEeCCCceEEEEEcCCCCEEEEEeec
Confidence            357778889999999997 7888999999999999865 699999999999999999999999999999999998765

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.89  E-value=2.2e-09  Score=92.53  Aligned_cols=74  Identities=16%  Similarity=0.247  Sum_probs=64.3

Q ss_pred             cceEEEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEeCC------E--EEEccCCcEEEeCCCCceeEEecCCccEE
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGD------S--WYPVQAGDVLWMAPFVPQWYAALGKTRTR  288 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~~g------~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  288 (300)
                      -...|.+.+|+||+..+. |.|.. +|.+||++|++.+.+.+      +  ...+++||++++|.|..|+.+|.|+++..
T Consensus        70 lglS~~rv~l~pgg~~~P-H~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~  148 (201)
T d2et1a1          70 LGVSMNRVDFAPGGTNPP-HIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAY  148 (201)
T ss_dssp             SSCEEEEEEECTTCEEEE-EECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEE
T ss_pred             cceeEEEEEECCCCCcCC-cccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEE
Confidence            368899999999999996 78864 58899999999987733      2  57899999999999999999999999988


Q ss_pred             EEEE
Q 022278          289 YLLY  292 (300)
Q Consensus       289 fi~~  292 (300)
                      +++.
T Consensus       149 ~i~~  152 (201)
T d2et1a1         149 MVVS  152 (201)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8863

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.84  E-value=6.5e-09  Score=96.68  Aligned_cols=77  Identities=16%  Similarity=0.071  Sum_probs=69.1

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEE-eCCEEEEccCCcEEEeCCCCceeEEec-CCccEEEEEEeec
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR-LGDSWYPVQAGDVLWMAPFVPQWYAAL-GKTRTRYLLYKDV  295 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~-~~g~~~~v~~GD~i~~~~~~~H~~~n~-G~e~~~fi~~kd~  295 (300)
                      ..+...+-.+.||...+. |.|..++..||++|+|.++ +||+..++++||++++|++++|++.|. +++++.++.+.|.
T Consensus        83 ~~l~~~~q~l~PGe~~~~-HrH~~~~~~~vi~G~g~~t~v~ge~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~~D~  161 (355)
T d3bu7a1          83 GWLFSGIQTMKAGERAGA-HRHAASALRFIMEGSGAYTIVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLDI  161 (355)
T ss_dssp             TTBEEEEEEECTTCBCCC-EEESSCEEEEEEECSCEEEEETTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEECH
T ss_pred             chhhhheEeeCCCCcCcc-cccccceeEEEEECCcEEEEECCEEEEeeCCCEEEeCCCceEeeecCCCCCcEEEEEecch
Confidence            347778889999999996 7889999999999999884 899999999999999999999999996 5689999887775

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.80  E-value=9.6e-09  Score=94.92  Aligned_cols=73  Identities=5%  Similarity=0.043  Sum_probs=63.0

Q ss_pred             cEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEE
Q 022278          103 HFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE  175 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~  175 (300)
                      .+....+++.||+....| .|..+|++|||+|++++++.++++..|++||++++|+|.+|+++| ...++++++.
T Consensus       248 ~~~~~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~~~~~~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~~~  322 (348)
T d1juha_         248 TLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVS  322 (348)
T ss_dssp             EEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEETTSCCEEECTTCEEEECTTCCEEEEESSSSEEEEEEE
T ss_pred             ceeEEEEEecCCCCCCCcccCCCCEEEEEEeceEEEEeCCcceEEecCCCEEEECCCCcEEEEeCCCCcEEEEEE
Confidence            577888999999888766 788899999999999999944577999999999999999999999 5567777763

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.79  E-value=1.2e-08  Score=87.62  Aligned_cols=80  Identities=14%  Similarity=0.049  Sum_probs=65.0

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe---CCEEE-------EccCCcEEEeCCCCceeEEecCC-cc
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GDSWY-------PVQAGDVLWMAPFVPQWYAALGK-TR  286 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~---~g~~~-------~v~~GD~i~~~~~~~H~~~n~G~-e~  286 (300)
                      .++.+.+++++||+-+-.|+ ..-.+..||++|+|++.+   ++...       .+++||++++|+|.+||++|.|+ ++
T Consensus        40 ~~~~v~~~~i~P~~l~lP~~-~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~  118 (200)
T d2phla1          40 EDYRLVEFRSKPETLLLPQQ-ADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKED  118 (200)
T ss_dssp             TTCEEEEEEECSSEEEEEEE-ESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCC
T ss_pred             cceEEEEEEecCCceeeeec-CCCCEEEEEEeeeEEEEEEECCCCceeehhhccCccCCCEEEECCCCeEEEEECCCCCC
Confidence            36888899999999987654 445678999999998853   55432       59999999999999999999885 79


Q ss_pred             EEEEEEeecCCC
Q 022278          287 TRYLLYKDVNRN  298 (300)
Q Consensus       287 ~~fi~~kd~nr~  298 (300)
                      |++++..|..-+
T Consensus       119 l~~~~l~~~~n~  130 (200)
T d2phla1         119 LRIIQLAMPVNN  130 (200)
T ss_dssp             EEEEEEEEESSS
T ss_pred             EEEEEEecCCCC
Confidence            999998876433

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.74  E-value=1.9e-08  Score=94.06  Aligned_cols=76  Identities=14%  Similarity=0.245  Sum_probs=65.8

Q ss_pred             CcEEEEEEEEcCCCcCCCCCC-CceEEEEEEECEEEEEEc--CC--cEEEeccCcEEEeCCCCceEEee--CCeEEEEEE
Q 022278          102 SHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNA--SG--VSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF  174 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h-~gEEf~yVLeG~v~l~v~--gg--~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v  174 (300)
                      +.|.+.+++|+||+..+.|-| ..+|+.||++|+.++++.  ++  +++.+++||.+|+|++..|.++|  ++++++|++
T Consensus       248 ~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~v  327 (372)
T d1j58a_         248 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEI  327 (372)
T ss_dssp             CSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEE
T ss_pred             CceeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEcCCCceEEEEecCCcEEEECCCCeEEEEECCCCCEEEEEE
Confidence            579999999999999888855 579999999999998872  22  36899999999999999999999  789999998


Q ss_pred             Eee
Q 022278          175 ERR  177 (300)
Q Consensus       175 ~~~  177 (300)
                      -+.
T Consensus       328 f~s  330 (372)
T d1j58a_         328 FKD  330 (372)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            554

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.68  E-value=9.9e-08  Score=81.11  Aligned_cols=76  Identities=9%  Similarity=0.123  Sum_probs=60.4

Q ss_pred             CCCCcEEEEEEEEcCCCcCC------CC--CC-CceEEEEEEECEEEEEEcC----CcEEEeccCcEEEeCCCCceEEee
Q 022278           99 AMGSHFVMYLANMQENARSA------LP--PH-DVERFIFVVQGSAMLTNAS----GVSSKLMVDSYTYLPPNFAHSLRA  165 (300)
Q Consensus        99 ~~g~~f~~~lv~l~PG~~~~------~~--~h-~gEEf~yVLeG~v~l~v~g----g~~~~L~~Gds~yfpa~~~H~~~N  165 (300)
                      ..+..+..-+.+++||....      .|  .| +.+|++|||+|+..+.+.+    ++++.+++||++|+|++..|++.|
T Consensus        62 ~~~~~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N  141 (190)
T d1x82a_          62 EKEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVN  141 (190)
T ss_dssp             SCTTCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEE
T ss_pred             cCCCCeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEE
Confidence            33456778899999996432      23  33 4789999999999998822    245789999999999999999999


Q ss_pred             --CCeEEEEEE
Q 022278          166 --EGSATLVVF  174 (300)
Q Consensus       166 --~~~a~vl~v  174 (300)
                        ++++.++++
T Consensus       142 ~Gde~L~~l~v  152 (190)
T d1x82a_         142 IGDEPFIFLAI  152 (190)
T ss_dssp             CSSSCEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence              788888887

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.62  E-value=4.7e-08  Score=83.97  Aligned_cols=73  Identities=14%  Similarity=0.106  Sum_probs=61.8

Q ss_pred             CcEEEEEEEEcCCCcCCCCCC-CceEEEEEEECEEEEEEcC-----Cc--EEEeccCcEEEeCCCCceEEee--CCeEEE
Q 022278          102 SHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNAS-----GV--SSKLMVDSYTYLPPNFAHSLRA--EGSATL  171 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h-~gEEf~yVLeG~v~l~v~g-----g~--~~~L~~Gds~yfpa~~~H~~~N--~~~a~v  171 (300)
                      -.+.+.+++|+||+..++|.| ..+|++||++|++.+.+.+     ++  +.+|++||.++||.|..|.+.|  ++++.+
T Consensus        70 lglS~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~  149 (201)
T d2et1a1          70 LGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYM  149 (201)
T ss_dssp             SSCEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEEE
T ss_pred             cceeEEEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEE
Confidence            468999999999999988866 5799999999999997712     22  4689999999999999999999  677777


Q ss_pred             EEE
Q 022278          172 VVF  174 (300)
Q Consensus       172 l~v  174 (300)
                      +.+
T Consensus       150 i~~  152 (201)
T d2et1a1         150 VVS  152 (201)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.61  E-value=8.5e-08  Score=80.39  Aligned_cols=88  Identities=9%  Similarity=0.096  Sum_probs=69.0

Q ss_pred             EEEEeeCCCC----CcceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEe---CC-E--EEEccCCcEEEeCCCC
Q 022278          207 QLRKLLPQAV----PFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRL---GD-S--WYPVQAGDVLWMAPFV  275 (300)
Q Consensus       207 ~~~~l~p~~~----~~~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~---~g-~--~~~v~~GD~i~~~~~~  275 (300)
                      .++.+.+.+.    .-++.+.+.+++||+.... |-|. ..+..||++|+|++.+   +| +  .+.+++||++++|.|.
T Consensus        25 ~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~P-H~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~vvP~G~  103 (174)
T d1fxza2          25 SVTTATSLDFPALSWLRLSAEFGSLRKNAMFVP-HYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNF  103 (174)
T ss_dssp             EEEEECTTTSGGGTTTTCCEEEEEECTTCEEEE-EEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTC
T ss_pred             EEEEecHHHhhhhhhcCceEEEeeecCCCEeCC-ccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEEEECCCC
Confidence            4555655442    2478899999999999986 6675 4478999999999985   44 4  4459999999999999


Q ss_pred             ceeEEecCCccEEEEEEeecC
Q 022278          276 PQWYAALGKTRTRYLLYKDVN  296 (300)
Q Consensus       276 ~H~~~n~G~e~~~fi~~kd~n  296 (300)
                      +|+..|.+ +.+.++++..-.
T Consensus       104 ~h~~~n~~-~~~~~v~~~~~~  123 (174)
T d1fxza2         104 VVAARSQS-DNFEYVSFKTND  123 (174)
T ss_dssp             EEEEEECS-TTEEEEEEESSS
T ss_pred             EEEEEeCC-CCeEEEEEEccC
Confidence            99999965 678999887543

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.58  E-value=9.8e-08  Score=83.94  Aligned_cols=89  Identities=15%  Similarity=0.241  Sum_probs=72.1

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC---------------------------
Q 022278          208 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---------------------------  257 (300)
Q Consensus       208 ~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~---------------------------  257 (300)
                      ++...+.+.-   .+.++.+.+++|++.+=. |+......+||++|+|++.+=                           
T Consensus        24 ~E~~d~~~~qlqcagV~~~r~~I~p~gL~lP-~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~~~~~d~~  102 (239)
T d1fxza1          24 IETWNPNNKPFQCAGVALSRCTLNRNALRRP-SYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRH  102 (239)
T ss_dssp             EEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EEESSCEEEEEEECCEEEEEECTTCCCC------------------CC
T ss_pred             EEecCCCChhhhhccchhheeeeccCceecc-eecCCCeEEEEEeCEEEEEEecCCChhhhcccccccccccccccchhh
Confidence            4445554422   357778889999999754 457777899999999998763                           


Q ss_pred             CEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecCC
Q 022278          258 DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  297 (300)
Q Consensus       258 g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr  297 (300)
                      -+.+.+++||++.+|+|++||++|.|+++|..++.=|+|=
T Consensus       103 qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n  142 (239)
T d1fxza1         103 QKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNS  142 (239)
T ss_dssp             CCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTC
T ss_pred             hhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEecccc
Confidence            3567999999999999999999999999999999887764

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.57  E-value=1.3e-07  Score=83.45  Aligned_cols=89  Identities=15%  Similarity=0.207  Sum_probs=72.3

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC---------------------------
Q 022278          208 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---------------------------  257 (300)
Q Consensus       208 ~~~l~p~~~~---~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~---------------------------  257 (300)
                      +....+.+.-   .+.++.+.+++|++.+-. |+.......||++|+|++.+=                           
T Consensus        24 ~E~wd~~~~qlqcagV~~~r~~I~p~gL~lP-~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~~~~~~~  102 (245)
T d1od5a1          24 IETWNSQHPELQCAGVTVSKRTLNRNGLHLP-SYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQ  102 (245)
T ss_dssp             EEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EECSSCEEEEEEECEEEEEECCTTCCCCEEECC---------------
T ss_pred             EEeCCCCCHHHhhcCceeEEEEEcCCccccc-cccCCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccccccccccc
Confidence            4445554322   367888899999999865 456788899999999998865                           


Q ss_pred             ---CEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecCC
Q 022278          258 ---DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  297 (300)
Q Consensus       258 ---g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr  297 (300)
                         -+.+.++.||++.+|+|++||++|.|+++|+-+..-|+|-
T Consensus       103 d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N  145 (245)
T d1od5a1         103 DSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSN  145 (245)
T ss_dssp             EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTC
T ss_pred             cceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccC
Confidence               2334599999999999999999999999999999999874

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.53  E-value=1.3e-07  Score=79.18  Aligned_cols=87  Identities=14%  Similarity=0.233  Sum_probs=68.2

Q ss_pred             EEEeeCCCCC----cceEEEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEe---CC-E--EEEccCCcEEEeCCCCc
Q 022278          208 LRKLLPQAVP----FDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRL---GD-S--WYPVQAGDVLWMAPFVP  276 (300)
Q Consensus       208 ~~~l~p~~~~----~~~~~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~---~g-~--~~~v~~GD~i~~~~~~~  276 (300)
                      +..+.+.+.-    -++.+.+..|+||+.... |.|.. .+.+||++|+|++.+   ++ +  ...+++||++++|.|.+
T Consensus        31 i~~~~~~~fP~L~~lgls~~~v~L~pga~~~P-H~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv~~iP~G~~  109 (173)
T d1od5a2          31 ISTLNSLTLPALRQFGLSAQYVVLYRNGIYSP-HWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFV  109 (173)
T ss_dssp             EEEESTTTCTTHHHHTCEEEEEEECTTCEEEE-EEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCE
T ss_pred             EEEecHHHhhhhhhccceEEEEEEcCCcEecC-ccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCcEEEECCCCE
Confidence            3345554432    268999999999999986 66755 478999999999884   33 3  34699999999999999


Q ss_pred             eeEEecCCccEEEEEEeecC
Q 022278          277 QWYAALGKTRTRYLLYKDVN  296 (300)
Q Consensus       277 H~~~n~G~e~~~fi~~kd~n  296 (300)
                      |+..| +++.++|+.+++-+
T Consensus       110 h~~~n-~~~~~~~v~~~~~~  128 (173)
T d1od5a2         110 VAEQG-GEQGLEYVVFKTHH  128 (173)
T ss_dssp             EEEEE-EEEEEEEEEEESST
T ss_pred             EEEEc-CCCceEEEEeecCC
Confidence            99887 56889999998743

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=98.53  E-value=8.5e-08  Score=77.92  Aligned_cols=99  Identities=13%  Similarity=0.042  Sum_probs=70.3

Q ss_pred             eccCCCCCCcccCC----ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC--EEEEc
Q 022278          190 VGSTDKQPLLETPG----EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPV  263 (300)
Q Consensus       190 ~~~~~d~~~~~~~g----~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--~~~~v  263 (300)
                      +-+.+|+||.+++.    +++..+.|.-+. .......++.++||+.+|. |+|...+..|||+|+-.+..+.  .-..+
T Consensus        10 ~v~~~d~~W~p~~~~~~~~G~~~k~L~~d~-~tg~~~~l~r~~~G~~~p~-H~H~~~e~~~VL~G~l~~~~g~~~~g~~~   87 (144)
T d2o1qa1          10 YVQMDQVDWKPFPAAFSTGGIRWKLLHVSP-EMGSWTAIFDCPAGSSFAA-HVHVGPGEYFLTKGKMDVRGGKAAGGDTA   87 (144)
T ss_dssp             CCCGGGSCCEECCGGGEESCCEEEEEEEET-TTTEEEEEEEECTTEEECC-EEESSCEEEEEEEEEEEETTCGGGTSEEE
T ss_pred             eEcccCCcceECCcccCCCCeEEEEeeeCC-CCCcEEEEEEeCCCcCcCC-CccccCEEEEEEEEEEEecCCCcCCCceE
Confidence            33789999999753    356666664221 1233567899999999997 7888888899999998876432  12467


Q ss_pred             cCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          264 QAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       264 ~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      .+|+++|.|+|.+|... +++++.+++.
T Consensus        88 ~~g~y~~~Pag~~H~~~-~~~e~~~~~~  114 (144)
T d2o1qa1          88 IAPGYGYESANARHDKT-EFPVASEFYM  114 (144)
T ss_dssp             ESSEEEEECTTCEESCC-EEEEEEEEEE
T ss_pred             eCCceeEcCCCCeEccc-cCCCCEEEEE
Confidence            89999999999999632 2445555543

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=98.52  E-value=1.1e-07  Score=79.51  Aligned_cols=74  Identities=16%  Similarity=0.170  Sum_probs=59.4

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE-c--CCcEEEeccCcEEEeCCCCceEEee-C--CeEEEEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-A--SGVSSKLMVDSYTYLPPNFAHSLRA-E--GSATLVVFE  175 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~--gg~~~~L~~Gds~yfpa~~~H~~~N-~--~~a~vl~v~  175 (300)
                      ..+....++|.||+-..+|.+..+|++||++|+..+.+ .  +.+++.|++||.+++|+|.+|.+.| .  +...++++.
T Consensus        42 ~~~~v~~~~i~p~~~~~Ph~~~a~ei~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~vP~G~~h~~~n~~~~~~l~iv~~~  121 (170)
T d1uija1          42 RDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLA  121 (170)
T ss_dssp             TTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             hheEEEEEEecCCcccccccCCCCEEEEEEEEEEEEEEEeCCCcEEEEecCCcEEEECCCCeEEEEEcCCCCcEEEEEec
Confidence            35888899999998776665678999999999999876 2  2356899999999999999999998 2  334454443

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.50  E-value=2.8e-08  Score=83.74  Aligned_cols=57  Identities=16%  Similarity=0.443  Sum_probs=49.6

Q ss_pred             ceeeccceEEEEEEeeEEE--EeCCEEE--EccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          236 KEVHYNQHGLLLLEGQGIY--RLGDSWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       236 ~~~H~~eh~~~iL~G~G~~--~~~g~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      -|+|..+|..||++|+|.+  ..+|+|+  .+++||+|.+|+|++|||.+..+..+++|.+
T Consensus        95 EH~H~~dEvr~vv~G~g~f~v~~~d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRl  155 (179)
T d1zrra1          95 EHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRI  155 (179)
T ss_dssp             CBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEE
T ss_pred             cccCCCceEEEEEeCeEEEEEEcCCeEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEE
Confidence            4788999999999999985  4566764  6899999999999999999998899998844

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.45  E-value=3e-07  Score=77.57  Aligned_cols=82  Identities=16%  Similarity=0.197  Sum_probs=63.5

Q ss_pred             EEEeeCCCCC----cceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEeCC-------------------EEEEc
Q 022278          208 LRKLLPQAVP----FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGD-------------------SWYPV  263 (300)
Q Consensus       208 ~~~l~p~~~~----~~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~~g-------------------~~~~v  263 (300)
                      +..+.+.+..    -++.+.+.+++||+-+.. |.|... +..||++|+|++.+=+                   ..+.|
T Consensus        26 ~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~P-h~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~~~~~~~~~~~~l  104 (185)
T d1uika2          26 LFEITPEKNPQLRDLDVFLSVVDMNEGALFLP-HFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAEL  104 (185)
T ss_dssp             EEEECTTTCHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEEESCEEEEEEEC------------CBCCEEEEEEE
T ss_pred             EEEeChhhChhhhhcCchhheeecCCCceeee-eecCCCCEEEEEEeeEEEEEEEccCccchhhccccccCcceeEEEEe
Confidence            4445554432    368999999999999986 667555 7889999999886521                   36789


Q ss_pred             cCCcEEEeCCCCceeEEecCCccEEEE
Q 022278          264 QAGDVLWMAPFVPQWYAALGKTRTRYL  290 (300)
Q Consensus       264 ~~GD~i~~~~~~~H~~~n~G~e~~~fi  290 (300)
                      ++||++++|+|.+||..|.|+..+.++
T Consensus       105 ~~GDv~viP~G~~~~~~n~~d~~~v~~  131 (185)
T d1uika2         105 SEQDIFVIPAGYPVVVNATSDLNFFAF  131 (185)
T ss_dssp             CTTCEEEECTTCCEEEEESSSEEEEEE
T ss_pred             cCCcEEEECCCCEEEEEcCCCccEEEE
Confidence            999999999999999999888555444

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=98.45  E-value=2e-07  Score=78.35  Aligned_cols=76  Identities=13%  Similarity=0.114  Sum_probs=61.5

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cCC--cEEEeccCcEEEeCCCCceEEee---CCeEEEEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRA---EGSATLVVFE  175 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg--~~~~L~~Gds~yfpa~~~H~~~N---~~~a~vl~v~  175 (300)
                      ..|...+++|+||+-..+|....+|.+||++|+..+++ ..+  +++.|++||.+++|+|.+|.+.|   ++...++++.
T Consensus        39 ~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~  118 (178)
T d1dgwa_          39 RDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFA  118 (178)
T ss_dssp             TTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEE
T ss_pred             cceEEEEEEecCCcccccccCCCCEEEEEEEeEEEEEEecCCceEEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEe
Confidence            36888899999999876664568999999999988876 222  56899999999999999999998   3466677665


Q ss_pred             ee
Q 022278          176 RR  177 (300)
Q Consensus       176 ~~  177 (300)
                      ..
T Consensus       119 ~~  120 (178)
T d1dgwa_         119 IT  120 (178)
T ss_dssp             EC
T ss_pred             cC
Confidence            43

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.43  E-value=7.6e-06  Score=71.94  Aligned_cols=174  Identities=9%  Similarity=0.153  Sum_probs=112.1

Q ss_pred             EEcCCCcCCCC--CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceE-Eee---CCeEEEEEEEeeccccCC
Q 022278          110 NMQENARSALP--PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHS-LRA---EGSATLVVFERRYASLEN  183 (300)
Q Consensus       110 ~l~PG~~~~~~--~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~-~~N---~~~a~vl~v~~~y~~~~g  183 (300)
                      +|+.+......  -...|--+..|.|..++++ ||++|.|.+.|++|++.|..+. +.+   ..+|+|.+.+.   |+..
T Consensus        58 ~l~~~~~~~~~~flerRElgiVnigG~g~V~V-DG~~f~l~~~D~lYvg~G~~~V~f~s~da~~pa~fyi~SA---PAh~  133 (260)
T d1ywka1          58 EIILDKELGVDYFLERRELGVINIGGPGFIEI-DGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISCV---PAHH  133 (260)
T ss_dssp             ECCCSGGGTSSSTTTTEEEEEEECSSCEEEEE-TTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEE---ECSS
T ss_pred             eccCchhccchhhhhhcEEEEEEeCCcEEEEE-CCEEEecCCCcEEEECCCCceEEEeccCCCCCcEEEEEee---ccCC
Confidence            34444433333  3566777888999999999 9999999999999999886554 444   46899988744   4455


Q ss_pred             CCcceeeccCCCCCCcccCC----ceeEEEEe-eCCCCC-cceEEEEEEecCCc---ccCcceeec--cceEEEE--EEe
Q 022278          184 HITEQIVGSTDKQPLLETPG----EVFQLRKL-LPQAVP-FDFNIHIMDFQPGD---FLNVKEVHY--NQHGLLL--LEG  250 (300)
Q Consensus       184 ~~p~~~~~~~~d~~~~~~~g----~~~~~~~l-~p~~~~-~~~~~~~~tl~PG~---~~p~~~~H~--~eh~~~i--L~G  250 (300)
                      .-|..++. .++++......    ...++.++ .|+... -...|-...|.||+   +.|. |+|.  +|+.||.  =++
T Consensus       134 ~yPtr~I~-~~~~~~~~~G~~~~sN~R~I~~~i~p~~~~scqLlmG~tvl~pGg~WsS~Pp-H~HDRrmE~YyYFdl~e~  211 (260)
T d1ywka1         134 KYPNVKIS-IDEITPMETGDPLTLNQRKIYQYIHPNVCESCQLQMGYTILEPGSAWNTMPC-HTHERRMEAYVYFDMEED  211 (260)
T ss_dssp             CCCCEEEC-TTTCCCCCBCCGGGTCCEEEEEEESTTTCCCSSCEEEEEEECTTCCCCC---------CEEEEEEESCCTT
T ss_pred             CCCcEEEC-HHHCCeEeccCccccCcceeeeeecCCccchhceEEEEEEEcCCCccCCcCC-cccCCCCceEEEEEcCCC
Confidence            44666665 55666555532    22355554 476544 45677788889997   4665 6665  4555554  123


Q ss_pred             eEEEEeCC-----EEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          251 QGIYRLGD-----SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       251 ~G~~~~~g-----~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      +-++.+-|     ...-|+-+|++..|+---|+  ..|.....||-
T Consensus       212 ~~V~H~mGep~eTrhivv~n~qaVisP~wsiHs--g~gt~~Y~FiW  255 (260)
T d1ywka1         212 TRIFHMMGKPDETKHLVMSNEQAAISPSWSIHS--GVGTSNYSFIW  255 (260)
T ss_dssp             CCEEEEESSTTSCEEEEECTTEEEEECTTSCCC--EEESSCCEEEE
T ss_pred             ceEEEeeCCCCceEEEEEECCcEEEcCCccccC--CCCccCcEEEE
Confidence            33444444     44778999999999999996  45666677763

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.6e-06  Score=74.49  Aligned_cols=182  Identities=10%  Similarity=0.037  Sum_probs=127.8

Q ss_pred             EEEEcCCCcCCCCCCC-ceEEEEEEECE-EEEEEcCCcEEEeccCcEEEeCCC--CceEEee--CCeEEE--EEEEeecc
Q 022278          108 LANMQENARSALPPHD-VERFIFVVQGS-AMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA--EGSATL--VVFERRYA  179 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~-gEEf~yVLeG~-v~l~v~gg~~~~L~~Gds~yfpa~--~~H~~~N--~~~a~v--l~v~~~y~  179 (300)
                      ...+.|+...+.|+|. -|.+=||++|. ++=.-.-|...++++||.=+.-||  +-|+=.|  +++.++  ||+.-+ +
T Consensus        42 ~~~~~~~~gf~~HPH~g~e~vTy~~~G~~~~H~Ds~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~lQiWinlp-~  120 (288)
T d1j1la_          42 EFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLR-S  120 (288)
T ss_dssp             EEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSCEEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEEECC-G
T ss_pred             cCcCCCCCCCCCCCcCCeEEEEEEEeCCeEEEecCCCCeeEecCCCEEEEecccceEecccccccccceeeEEEecCC-h
Confidence            3466777666777664 58888999985 554432378889999999999887  5676656  455554  366433 2


Q ss_pred             ccCCCCcceeeccCCCCCCcccCCceeEEEEeeC--------CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEee
Q 022278          180 SLENHITEQIVGSTDKQPLLETPGEVFQLRKLLP--------QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ  251 (300)
Q Consensus       180 ~~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~p--------~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~  251 (300)
                      ......|...--.-+|+|....++  +..+.+.-        -....+..+--+.++||+.+-..-.....-.+|+++|+
T Consensus       121 ~~k~~~P~y~~~~~~diP~~~~~~--~~~~vi~G~~~g~~~pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~  198 (288)
T d1j1la_         121 SEKMVEPQYQELKSEEIPKPSKDG--VTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGD  198 (288)
T ss_dssp             GGTTSCCEEEEECGGGSCCCEETT--EEEEEEESEETTEECCCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESC
T ss_pred             hhccccccccccccccCccccccc--ceEEEEeccccccccccccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEee
Confidence            223345666666667788776544  34444431        12234677778899999985321122344568999999


Q ss_pred             EEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          252 GIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       252 G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +.+...+....+++++.++..++..=.+.++++++++||++
T Consensus       199 ~~v~g~~~~~~l~~~~~~~l~~gd~~~i~~~~~~~a~~LLl  239 (288)
T d1j1la_         199 VYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLI  239 (288)
T ss_dssp             EEESCTTSCEEECTTEEEEECSCSEEEEECCSSSCEEEEEE
T ss_pred             EEecCcccceeecCceEEEEcCCCeEEEEeCCCCCCEEEEE
Confidence            99998888889999999999999887899999999999987

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.40  E-value=3.5e-07  Score=78.48  Aligned_cols=76  Identities=14%  Similarity=0.162  Sum_probs=60.9

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cC--CcEEEeccCcEEEeCCCCceEEee---CCeEEEEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-AS--GVSSKLMVDSYTYLPPNFAHSLRA---EGSATLVVFE  175 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~g--g~~~~L~~Gds~yfpa~~~H~~~N---~~~a~vl~v~  175 (300)
                      ..+...++++.||+-..+|.++.++++||++|+..+.+ ..  -+++.|++||.+++|+|.+|++.|   ++...++++.
T Consensus        38 ~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~~~~v~~~~~~~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~  117 (203)
T d1uika1          38 RDYRILEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLA  117 (203)
T ss_dssp             TTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             cceEEEEEEecCCCccccccCCCcEEEEEEEEEEEEEEEeCCCeEEEEecCCCEEEECCCCeEEEEECCCCccEEEEEEe
Confidence            36778899999998876665688999999999998876 22  256899999999999999999998   2455666654


Q ss_pred             ee
Q 022278          176 RR  177 (300)
Q Consensus       176 ~~  177 (300)
                      ..
T Consensus       118 ~~  119 (203)
T d1uika1         118 IP  119 (203)
T ss_dssp             EE
T ss_pred             cC
Confidence            43

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=6.3e-07  Score=72.73  Aligned_cols=51  Identities=18%  Similarity=0.155  Sum_probs=43.7

Q ss_pred             ccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEe-cCCccEEEE
Q 022278          240 YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA-LGKTRTRYL  290 (300)
Q Consensus       240 ~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n-~G~e~~~fi  290 (300)
                      ..=..+||++|+|.+.+||+++.+++||+++++||.+|.|.. .++++++|+
T Consensus        37 ~~Y~l~yv~~G~G~~~i~~~~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~   88 (161)
T d2arca_          37 KGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQ   88 (161)
T ss_dssp             SSEEEEEEEEECEEEEETTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEE
T ss_pred             CCEEEEEEEEeEEEEEECCEEEEecCCeEEEEcCCCcEEEEeCCCCCCEEEE
Confidence            334689999999999999999999999999999999998754 456777655

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.32  E-value=1.1e-06  Score=72.63  Aligned_cols=73  Identities=14%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             cceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEe---CCE---------EEEccCCcEEEeCCCCceeEEecCC
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL---GDS---------WYPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~---~g~---------~~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      -++.+..++++||+-... |-|... +..||++|+|++.+   +|+         ...+++||++++|.|.+|+..|.|+
T Consensus        18 l~~~v~~~~l~p~~~~~P-H~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~   96 (162)
T d2phla2          18 LNVLISSIEMEEGALFVP-HYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSN   96 (162)
T ss_dssp             TTEEEEEEEECTTEEEEE-EEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSS
T ss_pred             CCeEEEEEEECCCcEeCC-ccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCCC
Confidence            488999999999999875 556654 78999999998775   232         4689999999999999999999886


Q ss_pred             ccEEEEEEe
Q 022278          285 TRTRYLLYK  293 (300)
Q Consensus       285 e~~~fi~~k  293 (300)
                      ++  +++++
T Consensus        97 ~~--~v~~~  103 (162)
T d2phla2          97 VN--FTGFG  103 (162)
T ss_dssp             EE--EEEEE
T ss_pred             ce--EEEEE
Confidence            55  44443

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=8.1e-06  Score=72.36  Aligned_cols=163  Identities=9%  Similarity=0.132  Sum_probs=110.4

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceE-Eee---CCeEEEEEEEeeccccCCCCcceeeccCCCC
Q 022278          121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHS-LRA---EGSATLVVFERRYASLENHITEQIVGSTDKQ  196 (300)
Q Consensus       121 ~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~-~~N---~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~  196 (300)
                      -...|--++.|.|..++++ ||++|.|...|++|++.|..+. +.+   ..+|++.+.+.+   +...-|..++. .+++
T Consensus        73 LerRElgiVnlgG~g~V~V-DG~~feL~~rd~lYvg~G~~~V~f~s~da~~pa~fyl~SAP---Ah~~yPtr~i~-~~da  147 (277)
T d1xrua1          73 LERRELGVINIGGAGTITV-DGQCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAP---AHTTYPTKKVT-PDEV  147 (277)
T ss_dssp             TTTEEEEEEECSSCEEEEE-TTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEE---CSSCCCCEEEC-HHHH
T ss_pred             hhccEEEEEEeCCCEEEEE-CCEEEeeCCccEEEeCCCCceEEEeccCCCCCcEEEEEecc---cCCCCCcEEEC-HHHC
Confidence            4566778899999999999 9999999999999999987654 343   467999888544   44444555555 3344


Q ss_pred             CCcccC---C-ceeEEEEee-CCCCCc-ceEEEEEEecCCc---ccCcceeec--cceEEEEE--EeeEEEEeCC---E-
Q 022278          197 PLLETP---G-EVFQLRKLL-PQAVPF-DFNIHIMDFQPGD---FLNVKEVHY--NQHGLLLL--EGQGIYRLGD---S-  259 (300)
Q Consensus       197 ~~~~~~---g-~~~~~~~l~-p~~~~~-~~~~~~~tl~PG~---~~p~~~~H~--~eh~~~iL--~G~G~~~~~g---~-  259 (300)
                      ......   + ...++.+++ |+.... ...|-...+.||+   +.|. |+|.  +|+.||.-  ++.-++.+-|   + 
T Consensus       148 ~~~~~G~~~~sN~R~I~~~i~p~~~~s~qLlmG~tvl~PGg~WSSyPp-HkHDRrmEeyyYF~l~~~~~Vfh~mGep~et  226 (277)
T d1xrua1         148 SPVTLGDNLTSNRRTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPC-HTHERRMEVYFYFNMDDDACVFHMMGQPQET  226 (277)
T ss_dssp             CCEEECCGGGTCCEEEEEEESTTTCCCSSCEEEEEEECTTCCEESCSE-EECTTEEEEEEEESCCTTCCEEEEEEETTEE
T ss_pred             CeEeeccCCCcceEEEEEEecCCCcccceEEEEEEEEcCCCccCCCCC-ccCCCCcceEEEEEcCCCceEEEecCCCCce
Confidence            444442   2 233555544 765444 4666677788997   3554 7775  46776652  2233333332   3 


Q ss_pred             -EEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          260 -WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       260 -~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                       -.-|+-+|++.-|+.-.|+  ..|.....||-
T Consensus       227 rhivv~neqaVisP~wsih~--g~gt~~y~fiW  257 (277)
T d1xrua1         227 RHIVMHNEQAVISPSWSIHS--GVGTKAYTFIW  257 (277)
T ss_dssp             EEEEECSSEEEEECTTCEEE--EEESSCCEEEE
T ss_pred             eEEEEECCcEEECCCCcccC--CCCCcceEEEE
Confidence             3789999999999999998  55556666663

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.30  E-value=9.3e-07  Score=73.87  Aligned_cols=75  Identities=17%  Similarity=0.293  Sum_probs=61.4

Q ss_pred             CcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEc--CC-cE--EEeccCcEEEeCCCCceEEee-CCeEEEEEE
Q 022278          102 SHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNA--SG-VS--SKLMVDSYTYLPPNFAHSLRA-EGSATLVVF  174 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~--gg-~~--~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v  174 (300)
                      -.+.+.+++|+||+...+| +....|.+||++|++.+++.  +| +.  +.|++||.+++|+|..|...| ++...++.+
T Consensus        40 ~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~vvP~G~~h~~~n~~~~~~~v~~  119 (174)
T d1fxza2          40 LRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSF  119 (174)
T ss_dssp             TTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEE
T ss_pred             cCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEEEECCCCEEEEEeCCCCeEEEEE
Confidence            3688899999999988888 44789999999999999862  23 43  459999999999999999998 556777766


Q ss_pred             Ee
Q 022278          175 ER  176 (300)
Q Consensus       175 ~~  176 (300)
                      ..
T Consensus       120 ~~  121 (174)
T d1fxza2         120 KT  121 (174)
T ss_dssp             ES
T ss_pred             Ec
Confidence            43

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1.1e-06  Score=73.64  Aligned_cols=74  Identities=16%  Similarity=0.357  Sum_probs=58.0

Q ss_pred             EEEEEEecCCcccC---------cceeeccceEEEEEEeeEEEEeC---CEEE--EccCCcEEEeCCCCceeEEecCCcc
Q 022278          221 NIHIMDFQPGDFLN---------VKEVHYNQHGLLLLEGQGIYRLG---DSWY--PVQAGDVLWMAPFVPQWYAALGKTR  286 (300)
Q Consensus       221 ~~~~~tl~PG~~~p---------~~~~H~~eh~~~iL~G~G~~~~~---g~~~--~v~~GD~i~~~~~~~H~~~n~G~e~  286 (300)
                      .+-++++.|+..-.         .-|+|..+|+.|||+|.|.+.+.   ++|+  .+++||+|++|+|..|||...-+..
T Consensus        63 ~~D~i~l~p~~~pn~~~~~~~F~~EH~H~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~~~  142 (179)
T d1vr3a1          63 WMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNY  142 (179)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCC
T ss_pred             ceEEEEECCccCCCHHHHHHHHhhceeCCCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCCCC
Confidence            44577777765211         15889999999999999999874   5665  5689999999999999999887777


Q ss_pred             EEEEE-Eee
Q 022278          287 TRYLL-YKD  294 (300)
Q Consensus       287 ~~fi~-~kd  294 (300)
                      ++.|- |+|
T Consensus       143 v~aiRlF~~  151 (179)
T d1vr3a1         143 VKAMRLFVG  151 (179)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEEECC
Confidence            87775 554

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.22  E-value=1.5e-06  Score=72.52  Aligned_cols=73  Identities=18%  Similarity=0.231  Sum_probs=58.9

Q ss_pred             cEEEEEEEEcCCCcCCCCC-CCceEEEEEEECEEEEEEc--CC-cE--EEeccCcEEEeCCCCceEEee-CCeEEEEEEE
Q 022278          103 HFVMYLANMQENARSALPP-HDVERFIFVVQGSAMLTNA--SG-VS--SKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE  175 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~-h~gEEf~yVLeG~v~l~v~--gg-~~--~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~  175 (300)
                      .+..-++.|.||+...+|- ...+|++||++|+..+++.  ++ +.  .+|++||.++||+|..|...| ++.++++.+.
T Consensus        46 gls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv~~iP~G~~h~~~n~~~~~~~v~~~  125 (173)
T d1od5a2          46 GLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFK  125 (173)
T ss_dssp             TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             cceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCcEEEECCCCEEEEEcCCCceEEEEee
Confidence            5788899999999888884 4689999999999999862  22 33  469999999999999999887 5555655553

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=98.17  E-value=3.2e-06  Score=63.01  Aligned_cols=53  Identities=9%  Similarity=0.136  Sum_probs=45.1

Q ss_pred             CCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEE
Q 022278          122 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  174 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v  174 (300)
                      .+.+||+|||+|+++++..+|+.+++++||+++||.|..=.|+..+++|=+++
T Consensus        34 y~~~E~~~ileG~v~i~~~~G~~~~~~aGD~~~~p~G~~~~W~v~e~v~K~yv   86 (88)
T d1o5ua_          34 YDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYN   86 (88)
T ss_dssp             CSSCEEEEEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred             cCccEEEEEEEeEEEEEcCCCCEEEEeCCCEEEECCCCEEEEEECceEEEEEE
Confidence            45689999999999999867889999999999999999999997555554443

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=0.00018  Score=61.73  Aligned_cols=171  Identities=13%  Similarity=0.123  Sum_probs=110.0

Q ss_pred             EEEEEEEEcCCCcCCCCCC-CceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC--CceEEee---CCeEEE--EEEE
Q 022278          104 FVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA---EGSATL--VVFE  175 (300)
Q Consensus       104 f~~~lv~l~PG~~~~~~~h-~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~--~~H~~~N---~~~a~v--l~v~  175 (300)
                      -..-.-++.||+..+.|+| +-|-+=||++|+++=.-.-|...++++||.=+.-||  +-|+=.|   ++++++  ||+ 
T Consensus        41 ~v~ndd~~~pg~gf~~HpH~g~eivT~vl~G~~~H~DS~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~lQiWi-  119 (231)
T d1tq5a1          41 RVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWI-  119 (231)
T ss_dssp             EEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEEESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEE-
T ss_pred             EEEecceecCCCCCCCCCcCCeeEEEEEEeEEEEECCCCCCcEEECCCcEEEEecCCcEEEEeeccccCCCeEEEEEEe-
Confidence            3444778899998888866 558889999999987642356789999999999887  5566555   345666  466 


Q ss_pred             eeccccCCCCcceeeccCCCCCCcccCCceeEEEEeeCC------CCCcceEEEEEEecCCcccCcceee-ccceEEEEE
Q 022278          176 RRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQ------AVPFDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLL  248 (300)
Q Consensus       176 ~~y~~~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~p~------~~~~~~~~~~~tl~PG~~~p~~~~H-~~eh~~~iL  248 (300)
                      .+.  ..+..|..-....++++     + .  ...+.+.      ....+..+-...+++|+.+-. ... ...--+|++
T Consensus       120 ~P~--~~~~~p~y~~~~~~~~~-----~-~--~~~~~~~g~~~~~~~~~~~~l~~~~l~~g~~~~~-~l~~~~~~~lyvi  188 (231)
T d1tq5a1         120 MPE--ENGITPRYEQRRFDAVQ-----G-K--QLVLSPDARDGSLKVHQDMELYRWALLKDEQSVH-QIAAERRVWIQVV  188 (231)
T ss_dssp             CCS--SCSCCCEEEEECCCCCS-----S-E--EEEEESSCGGGCEECSSSCEEEEEEECTTCEEEE-CCCTTCEEEEEEE
T ss_pred             CCh--hHCCCcccccceecccc-----c-e--EEecccccccCCcccccccEEEEEEecCCceEEE-cccCCccEEEEEE
Confidence            222  23444554333222221     1 1  1111121      112355667888899987632 111 122347889


Q ss_pred             EeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          249 EGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       249 ~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      +|+..  +||+  .+.+||.+.+.++..=.+++  +++.++|++
T Consensus       189 ~G~l~--i~g~--~l~~gd~~~l~~~~~l~i~A--~~~a~~LL~  226 (231)
T d1tq5a1         189 KGNVT--INGV--KASTSDGLAIWDEQAISIHA--DSDSEVLLF  226 (231)
T ss_dssp             ESEEE--ETTE--EEETTCEEEEESCSCEEEEE--SSSEEEEEE
T ss_pred             eeEEE--ECCE--EccCCCeEEECCCCeEEEEE--CCCCEEEEE
Confidence            98866  5786  58899999998887777877  456788876

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=98.11  E-value=1.9e-06  Score=69.65  Aligned_cols=71  Identities=11%  Similarity=0.048  Sum_probs=56.6

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEE-eeCCeEEEEEE
Q 022278          103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSL-RAEGSATLVVF  174 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~-~N~~~a~vl~v  174 (300)
                      .....++.++||+..+.|.|.+.|.+|||+|++.... +.  ....+.+|+++|.|||..|.. ..++.+.++..
T Consensus        42 g~~~~l~r~~~G~~~p~H~H~~~e~~~VL~G~l~~~~-g~~~~g~~~~~g~y~~~Pag~~H~~~~~~e~~~~~~~  115 (144)
T d2o1qa1          42 GSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRG-GKAAGGDTAIAPGYGYESANARHDKTEFPVASEFYMS  115 (144)
T ss_dssp             TEEEEEEEECTTEEECCEEESSCEEEEEEEEEEEETT-CGGGTSEEEESSEEEEECTTCEESCCEEEEEEEEEEE
T ss_pred             CcEEEEEEeCCCcCcCCCccccCEEEEEEEEEEEecC-CCcCCCceEeCCceeEcCCCCeEccccCCCCEEEEEE
Confidence            4456889999999888889999999999999998753 32  225788999999999999974 44566666655

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.10  E-value=5.4e-06  Score=68.32  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=59.1

Q ss_pred             cEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEc--CCc---------EEEeccCcEEEeCCCCceEEeeCCeEE
Q 022278          103 HFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNA--SGV---------SSKLMVDSYTYLPPNFAHSLRAEGSAT  170 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~--gg~---------~~~L~~Gds~yfpa~~~H~~~N~~~a~  170 (300)
                      .+.+..++|+||+-..+| +....+++||++|++.+++-  +|+         +..|++||.+++|+|..|...|++...
T Consensus        19 ~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~~~   98 (162)
T d2phla2          19 NVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVN   98 (162)
T ss_dssp             TEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSSEE
T ss_pred             CeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCCCce
Confidence            788899999999888777 45679999999999988872  222         357999999999999999999966666


Q ss_pred             EEEE
Q 022278          171 LVVF  174 (300)
Q Consensus       171 vl~v  174 (300)
                      ++.+
T Consensus        99 ~v~~  102 (162)
T d2phla2          99 FTGF  102 (162)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5555

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.2e-05  Score=64.76  Aligned_cols=54  Identities=11%  Similarity=0.039  Sum_probs=48.4

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee---CCeEEEEEEE
Q 022278          121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA---EGSATLVVFE  175 (300)
Q Consensus       121 ~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N---~~~a~vl~v~  175 (300)
                      .++.=.++||++|+..+.+ +++++.+++||.+.+||+..|.+..   +++.+++|+.
T Consensus        35 g~~~Y~l~yv~~G~G~~~i-~~~~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~   91 (161)
T d2arca_          35 GMKGYILNLTIRGQGVVKN-QGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVY   91 (161)
T ss_dssp             CCSSEEEEEEEEECEEEEE-TTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEE
T ss_pred             CCCCEEEEEEEEeEEEEEE-CCEEEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEE
Confidence            4678899999999999999 9999999999999999999999763   4578999984

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=97.96  E-value=1.2e-05  Score=67.50  Aligned_cols=73  Identities=12%  Similarity=0.153  Sum_probs=59.4

Q ss_pred             CcEEEEEEEEcCCCcCCCCC-CCceEEEEEEECEEEEEEc-CC-----------------cEEEeccCcEEEeCCCCceE
Q 022278          102 SHFVMYLANMQENARSALPP-HDVERFIFVVQGSAMLTNA-SG-----------------VSSKLMVDSYTYLPPNFAHS  162 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~-h~gEEf~yVLeG~v~l~v~-gg-----------------~~~~L~~Gds~yfpa~~~H~  162 (300)
                      ..+.+..++|+||+-..+|- ....+.+||++|+..+.+- .+                 .++.|++||.+++|+|.+|.
T Consensus        40 ~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~  119 (185)
T d1uika2          40 LDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVV  119 (185)
T ss_dssp             HTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC------------CBCCEEEEEEECTTCEEEECTTCCEE
T ss_pred             cCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCccchhhccccccCcceeEEEEecCCcEEEECCCCEEE
Confidence            46899999999999887774 4678999999999888762 11                 25689999999999999999


Q ss_pred             EeeCCeEEEEEE
Q 022278          163 LRAEGSATLVVF  174 (300)
Q Consensus       163 ~~N~~~a~vl~v  174 (300)
                      +.|++...++.+
T Consensus       120 ~~n~~d~~~v~~  131 (185)
T d1uika2         120 VNATSDLNFFAF  131 (185)
T ss_dssp             EEESSSEEEEEE
T ss_pred             EEcCCCccEEEE
Confidence            999666666555

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=97.83  E-value=1.4e-05  Score=67.95  Aligned_cols=74  Identities=12%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE--cCCc-EE------EeccCcEEEeCCCCceEEee-C--CeE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGV-SS------KLMVDSYTYLPPNFAHSLRA-E--GSA  169 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v--~gg~-~~------~L~~Gds~yfpa~~~H~~~N-~--~~a  169 (300)
                      ..+....+++.|++-.-+|.....+.+||++|+..+.+  .+++ ++      .|++||.+++|+|.+|++.| +  +..
T Consensus        40 ~~~~v~~~~i~P~~l~lP~~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~l  119 (200)
T d2phla1          40 EDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDL  119 (200)
T ss_dssp             TTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCE
T ss_pred             cceEEEEEEecCCceeeeecCCCCEEEEEEeeeEEEEEEECCCCceeehhhccCccCCCEEEECCCCeEEEEECCCCCCE
Confidence            35777788999998876654568999999999988876  2333 22      58999999999999999998 2  456


Q ss_pred             EEEEEE
Q 022278          170 TLVVFE  175 (300)
Q Consensus       170 ~vl~v~  175 (300)
                      +++.+.
T Consensus       120 ~~~~l~  125 (200)
T d2phla1         120 RIIQLA  125 (200)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            665553

>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Restriction-modification controller protein C.AhdI
species: Aeromonas hydrophila [TaxId: 644]

Probab=97.79  E-value=5.8e-07  Score=63.65  Aligned_cols=44  Identities=11%  Similarity=-0.044  Sum_probs=40.8

Q ss_pred             CCccCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278           24 GGFCSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK   68 (300)
Q Consensus        24 ~~~~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~   68 (300)
                      -|+ |++++|+++|+|++++|++|||...|++     |+++||++...||
T Consensus        21 ~gl-tq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~lF   69 (69)
T d1y7ya1          21 KGL-SQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF   69 (69)
T ss_dssp             TTC-CHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC
T ss_pred             cCC-CHHHHHhHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHC
Confidence            344 8999999999999999999999999999     9999999998886

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=97.76  E-value=0.00051  Score=64.55  Aligned_cols=66  Identities=14%  Similarity=0.139  Sum_probs=50.6

Q ss_pred             cceEEEEEEecCCcccCcceee--ccceEEEEEEeeEEEEeCCE---EEEccCCcEEEeCCCCceeEEecCC
Q 022278          218 FDFNIHIMDFQPGDFLNVKEVH--YNQHGLLLLEGQGIYRLGDS---WYPVQAGDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       218 ~~~~~~~~tl~PG~~~p~~~~H--~~eh~~~iL~G~G~~~~~g~---~~~v~~GD~i~~~~~~~H~~~n~G~  284 (300)
                      .+|.+.++++.++..... ...  .-..++++++|+|.+..+++   .+++++||.+|++++.+=.+.+.|.
T Consensus       355 ~~F~v~~~~l~~~~~~~~-~~~~~~~~~Illv~~G~~~i~~~~~~~~~~~l~~G~~~fIpa~~~~~i~~~~~  425 (440)
T d1pmia_         355 AEFSVLQTIFDKSKGGKQ-VIEGLNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTADSA  425 (440)
T ss_dssp             SSCEEEEEECCTTTCCEE-EECCCSSCEEEEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEECSS
T ss_pred             CceEEEEEEECCCCCcee-eecCCCCcEEEEEEcCEEEEEecCCCccEEEeCCceEEEEcCCceEEEEeecC
Confidence            468888999988765322 112  22468999999999998654   7999999999999998767777764

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.69  E-value=0.00026  Score=63.66  Aligned_cols=59  Identities=17%  Similarity=0.245  Sum_probs=46.2

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCce-eEE
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ-WYA  280 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H-~~~  280 (300)
                      .|.+.++++.....+.   .....+++.+++|+|.+..+++.+++++||.+|+|+++.. .+.
T Consensus       246 ~F~~~~~~~~~~~~~~---~~~~~~il~vi~G~~~i~~~~~~~~l~~G~~~~ipa~~~~~~i~  305 (315)
T d1qwra_         246 YFSVYKWDINGEAEMA---QDESFLICSVIEGSGLLKYEDKTCPLKKGDHFILPAQMPDFTIK  305 (315)
T ss_dssp             SCEEEEEEEEEEEEEC---CCSSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCCCEEEE
T ss_pred             cEEEEEEEecCcEEec---cCCCcEEEEEEeCeEEEEECCEEEEEecCcEEEEECCCCCEEEE
Confidence            5778888887444332   2234579999999999999999999999999999998865 343

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.67  E-value=4.7e-06  Score=69.79  Aligned_cols=68  Identities=13%  Similarity=0.174  Sum_probs=48.9

Q ss_pred             CCCCCCceEEEEEEECEEEEEE-cCCcE--EEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCc
Q 022278          118 ALPPHDVERFIFVVQGSAMLTN-ASGVS--SKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHIT  186 (300)
Q Consensus       118 ~~~~h~gEEf~yVLeG~v~l~v-~gg~~--~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p  186 (300)
                      ..|.|..+|..||++|+..+.+ .+++.  ..+++||.+.+|+|++|++...+...+. ..+-|...+|+.|
T Consensus        94 ~EH~H~~dEvr~vv~G~g~f~v~~~d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~-aiRlF~~~~gW~~  164 (179)
T d1zrra1          94 NEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFT-AIRIFDNPEGWIA  164 (179)
T ss_dssp             SCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCE-EEEEECCGGGEES
T ss_pred             ccccCCCceEEEEEeCeEEEEEEcCCeEEEEEEcCCCEEEeCCCCeEccccCCCCCEE-EEEEecCCCCCee
Confidence            4567889999999999988765 24443  5789999999999999999864333333 3344555566544

>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Putative transcription regulator CylR2
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.62  E-value=1.1e-06  Score=61.58  Aligned_cols=42  Identities=10%  Similarity=-0.024  Sum_probs=40.0

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|.+.+|++|+|...|+.     |+++||++...+|.
T Consensus        16 tq~elA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~lf~   62 (66)
T d1utxa_          16 SQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQ   62 (66)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEE
T ss_pred             CHHHHHHhcccCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHcC
Confidence            7899999999999999999999999999     99999999998875

>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Putative transcriptional regulator RHA1 ro04071
species: Rhodococcus sp. RHA1 [TaxId: 101510]

Probab=97.61  E-value=1e-06  Score=64.86  Aligned_cols=42  Identities=10%  Similarity=0.040  Sum_probs=38.7

Q ss_pred             CCcccccccCCCCcceeeecCCC-CChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPT-LSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~-~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+++||+++|+|+++||++|||. ..||.     |+++||++.+++..
T Consensus        27 t~~eLA~~~Gvs~~~ls~iE~G~~~~ps~~tl~kia~~L~v~~~~Ll~   74 (82)
T d2ofya1          27 SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAA   74 (82)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHT
T ss_pred             CHHHHHHHHcCCHHHHHHHHcCCcCCCCHHHHHHHHHHHCCCHHHHHh
Confidence            89999999999999999999997 57998     99999999988765

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=0.00013  Score=60.19  Aligned_cols=67  Identities=18%  Similarity=0.167  Sum_probs=51.6

Q ss_pred             EcCCCcCCCCCCCceEEEEEEECEEEEEE-cC----Cc--EEEeccCcEEEeCCCCceEEeeCCeEEEEEEEee
Q 022278          111 MQENARSALPPHDVERFIFVVQGSAMLTN-AS----GV--SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  177 (300)
Q Consensus       111 l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~g----g~--~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~  177 (300)
                      -.|+.++..|-.++|||+|=++|.+.|.+ .+    |+  ...+++||.+++||+++|+-.-...+.=|+|++.
T Consensus        40 GGPN~R~DyH~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~tiGLVIEr~  113 (175)
T d1zvfa1          40 GGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVGIVVEQD  113 (175)
T ss_dssp             CSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEEEEEEEC
T ss_pred             cCCCcccccccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCCCCceEEEEEEe
Confidence            36777777778899999999999999976 22    23  6789999999999999999775444444555543

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=97.54  E-value=0.00017  Score=59.44  Aligned_cols=66  Identities=27%  Similarity=0.453  Sum_probs=51.2

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEE-cCCc--EEEeccCcEEEeCCCCceEEee-CCeEEEEEEEee
Q 022278          112 QENARSALPPHDVERFIFVVQGSAMLTN-ASGV--SSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERR  177 (300)
Q Consensus       112 ~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg~--~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~  177 (300)
                      .|+.++..|-.++|||+|=|+|.+.|.+ .+|+  ...+++||.+.+||+++|+-.- ...+.=|+|+++
T Consensus        43 GPN~R~DyH~~~~eE~FyQlkG~m~Lkv~e~g~~~di~I~EGe~fLLP~~vpHSPqR~~~~tiGLViEr~  112 (174)
T d1yfua1          43 GPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPEAGSACLVIERQ  112 (174)
T ss_dssp             SCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCCTTCEEEEEEEC
T ss_pred             CCcccCccccCcchhheeeeccceEEEEEeCCceEEEEcCCCcEEEeCCCCCCCcccCCCCceeEEEEEe
Confidence            5555666677899999999999999987 4554  4799999999999999999764 334444666553

>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: lambda C1 repressor, DNA-binding domain
species: Bacteriophage lambda [TaxId: 10710]

Probab=97.38  E-value=3.8e-06  Score=62.15  Aligned_cols=42  Identities=12%  Similarity=0.040  Sum_probs=40.1

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      ||.+||++.|+|+++||++|||.+.|+.     |+++|+++...|+.
T Consensus        27 tq~~lA~~lgis~~~is~~E~g~~~~s~~~l~~ia~~l~v~~~~~~~   73 (87)
T d1lmb3_          27 SQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP   73 (87)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred             CHHHHHHHhCccHHHHHHHHhccCCCcHHHHHHHHHHHCCCHHHHCh
Confidence            7899999999999999999999999999     99999999999985

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.38  E-value=0.00054  Score=61.18  Aligned_cols=122  Identities=15%  Similarity=0.095  Sum_probs=68.9

Q ss_pred             cEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEe-eccccC-C--CCcceeeccCCCCCCcccCCceeEEEEeeCCCCCc
Q 022278          143 VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER-RYASLE-N--HITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPF  218 (300)
Q Consensus       143 ~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~-~y~~~~-g--~~p~~~~~~~~d~~~~~~~g~~~~~~~l~p~~~~~  218 (300)
                      ..+.+++||++|+|||+.|...+.--+.+..-+. .|+... +  ..+.  ..|.+++.........    .+.+   ..
T Consensus       157 n~v~v~~Gd~i~IpaGtvHAg~g~li~Eiq~~SD~tyR~~~~D~~~~~~--~l~~~~~~~~~~~~~~----~~~~---~~  227 (299)
T d1zx5a1         157 NTFETTPYDTFVIRPGIPHAGEGLRVLEVSSNSTLAYFFNENDWEKVKK--VLNTKKVEEFEVKGKK----GMAE---TE  227 (299)
T ss_dssp             EEEECCTTCEEEECTTCCEEEESEEEEEEEESCCCCEESSTTTHHHHHH--HCCCSBCCGGGTBCBT----TEEE---CS
T ss_pred             cEEEcccCCEEEeCCCCcEECCCceEEEEecCCCceecccccCcccccc--ccchhhccccccCcee----ccCC---cc
Confidence            3578999999999999999955311111110000 011100 0  0011  1122222221111110    0111   23


Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCce
Q 022278          219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ  277 (300)
Q Consensus       219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H  277 (300)
                      .|.++++++.....+.   ....-+++++++|++++. +++.+++++|+.+++|+.+..
T Consensus       228 ~F~~~~~~~~~~~~~~---~~~~~~il~~~~G~~~i~-~~~~~~l~~G~s~~iPA~~~~  282 (299)
T d1zx5a1         228 NFGLEVVDVTGTAEIK---TGGVMNILYAAEGYFILR-GKETADLHRGYSCLVPASTDS  282 (299)
T ss_dssp             SEEEEEEEEEEEEEEE---CCSBCEEEEEEESCEEEE-SSSEEEECTTCEEEECTTCCE
T ss_pred             ceEEEEEEecCcEEec---cCCceEEEEEeccEEEEe-CCCEEEEcCCcEEEEecCCcc
Confidence            5778888876544332   233457899999999986 667799999999999998875

>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Probable transcriptional regulator VC1968, N-terminal domain
domain: Probable transcriptional regulator VC1968, N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=97.32  E-value=4.9e-06  Score=60.04  Aligned_cols=45  Identities=18%  Similarity=0.112  Sum_probs=41.7

Q ss_pred             CCccCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           24 GGFCSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        24 ~~~~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      -|+ |+++||+++|+|+++||++|||...|+.     |+++||++...|+.
T Consensus        20 ~g~-sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~   69 (79)
T d1y9qa1          20 RGL-SLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFA   69 (79)
T ss_dssp             TTC-CHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGT
T ss_pred             cCC-CHHHHHHHHCcchhHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhC
Confidence            455 8999999999999999999999999998     99999999998875

>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Regulatory protein C.BclI
species: Bacillus caldolyticus [TaxId: 1394]

Probab=97.30  E-value=3.8e-06  Score=60.38  Aligned_cols=42  Identities=14%  Similarity=0.054  Sum_probs=40.0

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+++||+++|+|+++||++|+|...|+.     |+++||++...|+.
T Consensus        25 tq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~   71 (77)
T d2b5aa1          25 SQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFR   71 (77)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhc
Confidence            8999999999999999999999999999     99999999998875

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=0.0004  Score=51.17  Aligned_cols=55  Identities=15%  Similarity=0.186  Sum_probs=42.0

Q ss_pred             EecCCcccCcceeeccceEEEEEEeeEEEEe-CCEEEEccCCcEEEeCCCCceeEEecC
Q 022278          226 DFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAALG  283 (300)
Q Consensus       226 tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~G  283 (300)
                      .-+||.. +.  +....|..|||+|+..++. ||+.+.++|||.+++|.|-.-...-..
T Consensus        24 ~~~pg~f-~~--~y~~~E~~~ileG~v~i~~~~G~~~~~~aGD~~~~p~G~~~~W~v~e   79 (88)
T d1o5ua_          24 EKEVSEF-DW--YYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLE   79 (88)
T ss_dssp             EECSEEE-EE--ECSSCEEEEEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEEEE
T ss_pred             eecCcEE-EE--EcCccEEEEEEEeEEEEEcCCCCEEEEeCCCEEEECCCCEEEEEECc
Confidence            3456543 22  3345578999999999998 789999999999999999876555543

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=97.22  E-value=0.00019  Score=62.43  Aligned_cols=73  Identities=11%  Similarity=0.117  Sum_probs=57.1

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc-C-------------------------CcEEEeccCcEEEe
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA-S-------------------------GVSSKLMVDSYTYL  155 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~-g-------------------------g~~~~L~~Gds~yf  155 (300)
                      +....+..+|.|++-.-++.......+||++|+..+.+. .                         -+.+.|++||.+.+
T Consensus        37 agV~~~r~~I~p~gL~lP~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~i  116 (239)
T d1fxza1          37 AGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAV  116 (239)
T ss_dssp             HTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEEE
T ss_pred             ccchhheeeeccCceecceecCCCeEEEEEeCEEEEEEecCCChhhhcccccccccccccccchhhhhhhccccCCEEEe
Confidence            356778899999987755557889999999999888762 1                         23469999999999


Q ss_pred             CCCCceEEeeCCeEEEEEE
Q 022278          156 PPNFAHSLRAEGSATLVVF  174 (300)
Q Consensus       156 pa~~~H~~~N~~~a~vl~v  174 (300)
                      |||.+|++.|+....+++|
T Consensus       117 PAG~~~w~~N~gn~~Lv~v  135 (239)
T d1fxza1         117 PTGVAWWMYNNEDTPVVAV  135 (239)
T ss_dssp             CTTCEEEEEECSSSCEEEE
T ss_pred             cCCceEEEEeCCCCcEEEE
Confidence            9999999999544444444

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00035  Score=58.08  Aligned_cols=68  Identities=13%  Similarity=0.124  Sum_probs=50.5

Q ss_pred             CCCCCCceEEEEEEECEEEEEEc--CCcE--EEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCc
Q 022278          118 ALPPHDVERFIFVVQGSAMLTNA--SGVS--SKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHIT  186 (300)
Q Consensus       118 ~~~~h~gEEf~yVLeG~v~l~v~--gg~~--~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p  186 (300)
                      ..|.|..+|+.||++|+..+.+.  +++.  ..+++||.+.+|+|+.|++.-++. ..+...+-|.-.+|+.|
T Consensus        86 ~EH~H~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~-~~v~aiRlF~~~~~W~~  157 (179)
T d1vr3a1          86 EEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEK-NYVKAMRLFVGEPVWTP  157 (179)
T ss_dssp             SCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTT-CCEEEEEEESSSCCCCC
T ss_pred             hceeCCCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCC-CCEEEEEEECCCCeeeE
Confidence            45679999999999999999883  2444  467899999999999999985332 22333455666677655

>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: NE1354
domain: HTH-motif protein NE1354
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.15  E-value=1e-05  Score=57.02  Aligned_cols=41  Identities=7%  Similarity=-0.084  Sum_probs=36.3

Q ss_pred             CCcccccccCCCCcceeeecCCC-CChhh-----hhcccCCcceeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPT-LSPSH-----LQDLPGFTRSVYK   68 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~-~sps~-----I~~~lg~trs~f~   68 (300)
                      |+.+||+++|+|++++|++|||. ..||.     |+++||++.....
T Consensus        21 tq~elA~~~gv~~~~is~ie~g~~~~~s~~~L~~ia~~Lg~~i~~~~   67 (69)
T d2a6ca1          21 TQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINI   67 (69)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCCC
T ss_pred             CHHHHHHHHHcCHhHHHHHHcccccchhHHHHHHHHHHhCCCcEeee
Confidence            78999999999999999999997 67898     9999999876543

>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: SinR repressor, DNA-binding domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.09  E-value=7.6e-06  Score=57.40  Aligned_cols=42  Identities=10%  Similarity=0.116  Sum_probs=38.3

Q ss_pred             CCcccccccCCCCcceeeecCCC-CChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPT-LSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~-~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+++||+++|+|++++|++|||. ..|+.     |+++|+++...|+.
T Consensus        16 tq~~la~~~gis~~~i~~~E~g~~~~ps~~~l~~ia~~l~v~~~~l~~   63 (68)
T d1b0na2          16 SLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD   63 (68)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHC
T ss_pred             CHHHHHHHHCCCHHHHHHHHcCCCCCCCHHHHHHHHHHHCCcHHHHcC
Confidence            68899999999999999999996 46988     99999999998876

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=97.04  E-value=0.002  Score=53.85  Aligned_cols=73  Identities=15%  Similarity=0.193  Sum_probs=57.4

Q ss_pred             EEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE---cC-------CcEEEeccCcEEEeCCC--Cc
Q 022278           93 AYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN---AS-------GVSSKLMVDSYTYLPPN--FA  160 (300)
Q Consensus        93 ~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v---~g-------g~~~~L~~Gds~yfpa~--~~  160 (300)
                      +.++.-.....|+.+++...||..++.|.|+....+.|++|+++.++   .+       .++..|.+|+..++.++  .-
T Consensus        57 r~lLy~d~~~~f~i~~i~W~pG~~tpiHdH~~w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~I  136 (192)
T d2gm6a1          57 QMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDI  136 (192)
T ss_dssp             EEEEEECTTSSCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCC
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCCCCCCCCCceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCce
Confidence            44454444457999999999999999998888899999999987753   11       24568999999998664  56


Q ss_pred             eEEee
Q 022278          161 HSLRA  165 (300)
Q Consensus       161 H~~~N  165 (300)
                      |+++|
T Consensus       137 H~v~N  141 (192)
T d2gm6a1         137 HRVHN  141 (192)
T ss_dssp             EEEEE
T ss_pred             eEEec
Confidence            99998

>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: P22 C2 repressor, DNA-binding domain
species: Salmonella bacteriophage P22 [TaxId: 10754]

Probab=97.03  E-value=1.1e-05  Score=56.21  Aligned_cols=41  Identities=7%  Similarity=-0.051  Sum_probs=37.8

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK   68 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~   68 (300)
                      |+.++|+++|+|++.+|++|+|...|+.     |+++++++...++
T Consensus        18 tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~Ll   63 (66)
T d2r1jl1          18 RQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL   63 (66)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHh
Confidence            7899999999999999999999999999     9999999887654

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=97.03  E-value=0.00063  Score=59.20  Aligned_cols=73  Identities=12%  Similarity=0.104  Sum_probs=56.7

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc-C--Cc--------------------------EEEeccCcE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA-S--GV--------------------------SSKLMVDSY  152 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~-g--g~--------------------------~~~L~~Gds  152 (300)
                      +.......+|.|++-.-++.......+||++|+..+.+. .  -+                          ...|+.||.
T Consensus        37 agV~~~r~~I~p~gL~lP~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~~~~~~~d~~qk~~rl~~GDV  116 (245)
T d1od5a1          37 AGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDV  116 (245)
T ss_dssp             HTCEEEEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC---------------EEESCEEEEETTEE
T ss_pred             cCceeEEEEEcCCccccccccCCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccccccccccccceeeeecccCCCE
Confidence            467788899999987755557789999999999988872 1  12                          235999999


Q ss_pred             EEeCCCCceEEeeC--CeEEEEEE
Q 022278          153 TYLPPNFAHSLRAE--GSATLVVF  174 (300)
Q Consensus       153 ~yfpa~~~H~~~N~--~~a~vl~v  174 (300)
                      +.+|||.+|++.|+  ++..++.+
T Consensus       117 i~iPAG~~~w~yNdgn~~Lv~v~~  140 (245)
T d1od5a1         117 LVIPPGVPYWTYNTGDEPVVAISL  140 (245)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEEE
T ss_pred             EEECCCceEEEEeCCCCcEEEEEE
Confidence            99999999999994  45444444

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=96.94  E-value=0.0028  Score=52.88  Aligned_cols=90  Identities=13%  Similarity=0.080  Sum_probs=62.6

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEE---eCC--------EEEEccCCcEEEeCCC-
Q 022278          207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR---LGD--------SWYPVQAGDVLWMAPF-  274 (300)
Q Consensus       207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~---~~g--------~~~~v~~GD~i~~~~~-  274 (300)
                      ..|.|+-.+....|.+-.+...||..+|.|-|..| ..+.+|+|+-..+   .++        ....+++||+.++.++ 
T Consensus        55 y~r~lLy~d~~~~f~i~~i~W~pG~~tpiHdH~~w-~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~  133 (192)
T d2gm6a1          55 YQQMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVW-GLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTV  133 (192)
T ss_dssp             CEEEEEEECTTSSCEEEEEEECTTCBCCSBCCSSC-EEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTT
T ss_pred             eEEEEEEECCCCCEEEEEEecCCCCCCCCCCCCCc-eEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCC
Confidence            34556644433345566888999999998655555 7889999987544   222        4567899999999774 


Q ss_pred             -CceeEEec-CCcc-EEE-EEEeecCC
Q 022278          275 -VPQWYAAL-GKTR-TRY-LLYKDVNR  297 (300)
Q Consensus       275 -~~H~~~n~-G~e~-~~f-i~~kd~nr  297 (300)
                       .-|.+.|. |+++ .++ +|-++.+|
T Consensus       134 ~~IH~v~N~~~~~~avSLHvYg~~l~~  160 (192)
T d2gm6a1         134 GDIHRVHNAYDDRVSISIHVYGANIGG  160 (192)
T ss_dssp             BCCEEEEESCSSSCEEEEEEESSCGGG
T ss_pred             CceeEEecCCCCccEEEEEECCCCCCc
Confidence             57999996 6675 466 44456664

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=96.93  E-value=0.0018  Score=50.85  Aligned_cols=79  Identities=13%  Similarity=0.013  Sum_probs=58.9

Q ss_pred             eEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC-----EEEEccCCcEEEeCCCCceeEEecCCccEEEEEEee
Q 022278          220 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD-----SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  294 (300)
Q Consensus       220 ~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g-----~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd  294 (300)
                      +.+-+.+..+|..=+.|-|+-+...+++++|...+.+.+     ...--++++.+++|||+.|++.+.+++ ..++++=|
T Consensus        32 r~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg~~h~~~~l~~~-s~ll~l~~  110 (135)
T d2pa7a1          32 RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSD-CVMMVLAS  110 (135)
T ss_dssp             EEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTT-CEEEEEES
T ss_pred             eEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCCEeeeEEecCCC-cEEEEEcC
Confidence            333345567888777766666778899999999977655     222337889999999999999999865 67777766


Q ss_pred             cCCCC
Q 022278          295 VNRNP  299 (300)
Q Consensus       295 ~nr~~  299 (300)
                      -.+||
T Consensus       111 ~~y~~  115 (135)
T d2pa7a1         111 DYYDE  115 (135)
T ss_dssp             SCCCG
T ss_pred             CCCCh
Confidence            65554

>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: 434 C1 repressor, DNA-binding domain
species: Bacteriophage 434 [TaxId: 10712]

Probab=96.78  E-value=2e-05  Score=54.24  Aligned_cols=40  Identities=8%  Similarity=0.056  Sum_probs=35.3

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK   68 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~   68 (300)
                      |++++|+++|+|++.||++|||.+ |+.     |+++||++...|+
T Consensus        16 sq~elA~~~gvs~~~is~~E~g~~-~~~~~l~~ia~~l~v~~~~l~   60 (63)
T d1r69a_          16 NQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLL   60 (63)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHTTSC-SSCTTHHHHHHHTTCCHHHHH
T ss_pred             cHHHHHHHhCcCHHHHHHHHCCCC-cCHHHHHHHHHHHCcCHHHHh
Confidence            788999999999999999999974 765     9999999887764

>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: EDF1-like
domain: Endothelial differentiation-related factor 1, EDF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=3.3e-05  Score=55.68  Aligned_cols=39  Identities=5%  Similarity=0.076  Sum_probs=36.0

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCccee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSV   66 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~   66 (300)
                      |+.+||+++|+|.++||++|+|...|+.     |+.+||+++..
T Consensus        21 tq~~lA~~~gis~~~is~~E~G~~~p~~~~l~~la~~l~v~l~~   64 (78)
T d1x57a1          21 TQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRG   64 (78)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSS
T ss_pred             ChhHHHHcCCCCHHHHHHHHccCCCCCHHHHHHHHHHhCCcccc
Confidence            7899999999999999999999999999     99999988643

>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: cro 434
species: Bacteriophage 434 [TaxId: 10712]

Probab=96.61  E-value=3.9e-05  Score=53.13  Aligned_cols=40  Identities=0%  Similarity=-0.085  Sum_probs=35.1

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh----hhcccCCcceee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRSVY   67 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs~f   67 (300)
                      ||++||+++|+|++.||++|+|.+-|+.    |+++||++...+
T Consensus        18 tq~~lA~~~gvs~~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~L   61 (65)
T d2croa_          18 TQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWL   61 (65)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHTTCCSSCTTHHHHHHHTTSCHHHH
T ss_pred             CHHHHHHHHCcCHhHHHHHHCCCCCCHHHHHHHHHHhCCCHHHH
Confidence            7899999999999999999999987766    888888876544

>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: NE1354
domain: Hypothetical protein RPA3824
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.59  E-value=6.9e-05  Score=55.33  Aligned_cols=43  Identities=16%  Similarity=0.019  Sum_probs=38.3

Q ss_pred             CCcccccccCCCCcceeeecCCC-CChhh-----hhcccCCcceeeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPT-LSPSH-----LQDLPGFTRSVYKRD   70 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~-~sps~-----I~~~lg~trs~f~~~   70 (300)
                      |+.++|+++|+|++.+|++|||. .+|+.     |+++||++...+...
T Consensus        26 tq~~lA~~~gis~~~is~ie~G~~~~~~~~~L~~ia~~Lg~~i~~~~~~   74 (89)
T d2o38a1          26 SQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIRK   74 (89)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CHHHHHHHHHhhHhHHHHHHcCCCCCCcHHHHHHHHHHcCCCHHHeecC
Confidence            78899999999999999999997 56998     999999998877664

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0055  Score=53.74  Aligned_cols=90  Identities=12%  Similarity=-0.021  Sum_probs=70.4

Q ss_pred             cCCceeEEEEeeCC-C---CCcceEEEEEEecCCcccCcceeeccceEEEEEEee-EEEEeC-CEEEEccCCcEEEeCC-
Q 022278          201 TPGEVFQLRKLLPQ-A---VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ-GIYRLG-DSWYPVQAGDVLWMAP-  273 (300)
Q Consensus       201 ~~g~~~~~~~l~p~-~---~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~-G~~~~~-g~~~~v~~GD~i~~~~-  273 (300)
                      .+|.++.++.++|. +   .+.-..+.-+...|+.-+|.|-|.+.|=.-|||+|. ....+. |....+++||+-||.+ 
T Consensus        15 ~~g~G~~v~R~~~~~~~~~~~Pf~~~d~~~~~~~~gf~~HPH~g~e~vTy~~~G~~~~H~Ds~G~~~~i~~G~vq~mtAG   94 (288)
T d1j1la_          15 SEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAG   94 (288)
T ss_dssp             EETBTEEEEECTTSTTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSCEEEECTTCEEEEECT
T ss_pred             cccCCEEEEEeCCCCCccccCceEEeEcCcCCCCCCCCCCCcCCeEEEEEEEeCCeEEEecCCCCeeEecCCCEEEEecc
Confidence            45666777777753 2   233456677888998888888777888778999985 566665 8999999999999965 


Q ss_pred             -CCceeEEecCCccEEEE
Q 022278          274 -FVPQWYAALGKTRTRYL  290 (300)
Q Consensus       274 -~~~H~~~n~G~e~~~fi  290 (300)
                       |+-|+=.|..+++++++
T Consensus        95 ~Gi~HsE~~~~~~~~~~l  112 (288)
T d1j1la_          95 RGILHAEMPCSEEPAHGL  112 (288)
T ss_dssp             TCEEEEEEECSSSCEEEE
T ss_pred             cceEecccccccccceee
Confidence             67899999988888775

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0087  Score=50.71  Aligned_cols=78  Identities=15%  Similarity=0.018  Sum_probs=63.0

Q ss_pred             CCCCCc--ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCC--CCceeEEecCC-cc
Q 022278          213 PQAVPF--DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAP--FVPQWYAALGK-TR  286 (300)
Q Consensus       213 p~~~~~--~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~--~~~H~~~n~G~-e~  286 (300)
                      |..+++  -++++--++.||+-+|.|-|...|=.-|||+|+...++. |....+++||+-||.+  |+.|+=.|..+ ++
T Consensus        32 p~~~~fg~l~v~ndd~~~pg~gf~~HpH~g~eivT~vl~G~~~H~DS~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~  111 (231)
T d1tq5a1          32 PNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTER  111 (231)
T ss_dssp             SSCSCBTTEEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEEESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCC
T ss_pred             ccccCCCceEEEecceecCCCCCCCCCcCCeeEEEEEEeEEEEECCCCCCcEEECCCcEEEEecCCcEEEEeeccccCCC
Confidence            444444  488999999999999998777888778999999999875 5788999999999965  67898888644 46


Q ss_pred             EEEE
Q 022278          287 TRYL  290 (300)
Q Consensus       287 ~~fi  290 (300)
                      +.++
T Consensus       112 ~~~l  115 (231)
T d1tq5a1         112 LHLY  115 (231)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6664

>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Antitoxin HigA
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=7.4e-05  Score=54.94  Aligned_cols=42  Identities=7%  Similarity=-0.003  Sum_probs=38.1

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR   69 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~   69 (300)
                      |+.+||+++|+|.+.||++|+|...|+.     |+++||++..++-.
T Consensus        16 sq~~LA~~lGvs~~~is~ie~g~~~~s~~~~~kla~~lgvs~~~~L~   62 (87)
T d2icta1          16 SLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLN   62 (87)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHH
T ss_pred             CHHHHHHHHhhcHHHHHHHHHhccCCCHHHHHHHHHHHCcCHHHHHh
Confidence            7889999999999999999999999998     99999999776543

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=96.27  E-value=0.0077  Score=49.73  Aligned_cols=77  Identities=16%  Similarity=0.243  Sum_probs=59.0

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEE----cCC-------cEEEeccCcEEEeCCC-CceEEee---
Q 022278          102 SHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTN----ASG-------VSSKLMVDSYTYLPPN-FAHSLRA---  165 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v----~gg-------~~~~L~~Gds~yfpa~-~~H~~~N---  165 (300)
                      .+|+.+++.-.||..++.|.|+ ..-++-||+|++..+.    .++       .+..+.+|+..|+.+. --|++.|   
T Consensus        64 ~~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~  143 (186)
T d3elna1          64 GKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSH  143 (186)
T ss_dssp             GTCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCS
T ss_pred             CCeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCC
Confidence            4799999999999999999886 5788899999997764    111       3578999999998776 4799999   


Q ss_pred             CCe-EEEEEEEeec
Q 022278          166 EGS-ATLVVFERRY  178 (300)
Q Consensus       166 ~~~-a~vl~v~~~y  178 (300)
                      +++ +.+.++..+|
T Consensus       144 ~~~avsLHvYspP~  157 (186)
T d3elna1         144 TEPAVSLHLYSPPF  157 (186)
T ss_dssp             SCCEEEEEEEESCC
T ss_pred             CCCeEEEEEeCCCh
Confidence            243 3455655554

>d1ylla1 b.82.1.17 (A:2-196) Hypothetical protein PA5104 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: PA5104-like
domain: Hypothetical protein PA5104
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.22  E-value=0.14  Score=42.26  Aligned_cols=162  Identities=13%  Similarity=0.039  Sum_probs=96.1

Q ss_pred             EeCCCCeeeccCCCCCcceEEEEecCCCC-CcEEE--EEEEEcCCCcCCCCCCCceEEEEEEECE-EEEEEcCCcE-EEe
Q 022278           73 LITPESHVLSPLPEWTNTLGAYLITPAMG-SHFVM--YLANMQENARSALPPHDVERFIFVVQGS-AMLTNASGVS-SKL  147 (300)
Q Consensus        73 v~~~e~~~~~~~p~~~~~~~~~L~sp~~g-~~f~~--~lv~l~PG~~~~~~~h~gEEf~yVLeG~-v~l~v~gg~~-~~L  147 (300)
                      +++.+++...+=.+-.|.+..+..+|..+ ..|..  -+.++...+.... -.+.++.+.||+|. ++|.. ++.. ..+
T Consensus         5 iir~~d~~~~pWkNGgG~T~Eia~~p~~~~~~f~wRiSiA~V~~~gpFS~-FpgidR~l~vl~G~g~~L~~-~~~~~~~~   82 (195)
T d1ylla1           5 ILRAVDYPRMPWKNGAGSTEEIARDGGDGLDGFGWRLSIADVGESGGFSG-FAGYQRIISVLEGGGMRLRV-DGAESAPL   82 (195)
T ss_dssp             EECGGGCCEEC-----CEEEEEEESSCSGGGSCSEEEEEEEECSCEEECC-CTTCEEEEEEEESSCEEEEE-TTEECCCB
T ss_pred             EEcHHHCCcccccCCCeEEEEEEEcCCCCcCCceEEEEEeEecCCCCCCC-CCCccEEEEEEECCeEEEEE-CCccEeec
Confidence            56666665543222235566666676544 24443  3556654432222 36889999999998 99998 7765 457


Q ss_pred             ccCcEEEeCCCCceEEee-CCeEEEEEEEeeccccCCCCcceeeccCCCCCCcccCCceeEEEEeeCCCCCcceEEEEEE
Q 022278          148 MVDSYTYLPPNFAHSLRA-EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMD  226 (300)
Q Consensus       148 ~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t  226 (300)
                      .+++.+.|+.+.+-.-+- +.+++-+-++.  .+-.-                     .+.+++              +.
T Consensus        83 ~~~~~~~F~Gd~~~~a~L~~Gpi~dfNlM~--rr~~~---------------------~a~~~~--------------~~  125 (195)
T d1ylla1          83 RARQAFAFSGDSEVHCTLLDGAIRDFNLIY--APRRH---------------------RARLQW--------------LR  125 (195)
T ss_dssp             CBTCCEEEETTSCEEEEESSSCEEEEEEEE--CTTTE---------------------EEEEEE--------------EE
T ss_pred             CCCCccCcCCCCcEEEEeCCCCEEEEEEEE--eCCcc---------------------EEEEEE--------------Ee
Confidence            899999999888776653 66776666532  21100                     001111              11


Q ss_pred             ecCCcccCcceeeccceEEEEEEeeEEEEeCCE-EEEccCCcEEEeCCCCc
Q 022278          227 FQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS-WYPVQAGDVLWMAPFVP  276 (300)
Q Consensus       227 l~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~-~~~v~~GD~i~~~~~~~  276 (300)
                      ..  +.... +.......+|++.|+..+.++|. ...+.+||.+++.....
T Consensus       126 ~~--~~~~~-~~~a~~~ll~~~~G~~~v~~~g~~~~~L~~~d~L~~~~~~~  173 (195)
T d1ylla1         126 VE--GELDW-HGTASTLLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQG  173 (195)
T ss_dssp             EE--EEEEE-EECCSEEEEEESSSCEEEEETTEEEEEECTTCEEEEESCCS
T ss_pred             cC--Cceee-cCCCCEEEEEEccCcEEEEcCCCceEecCCCcEEEEeCCCC
Confidence            10  01110 11122335889999999999875 56899999999976543

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=95.72  E-value=0.012  Score=46.01  Aligned_cols=73  Identities=12%  Similarity=0.242  Sum_probs=50.4

Q ss_pred             EEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCC---cEEEe-ccCcEEEeCCCCceEEee-CCeEEEE-EEEeeccc
Q 022278          108 LANMQENARSALP-PHDVERFIFVVQGSAMLTNASG---VSSKL-MVDSYTYLPPNFAHSLRA-EGSATLV-VFERRYAS  180 (300)
Q Consensus       108 lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg---~~~~L-~~Gds~yfpa~~~H~~~N-~~~a~vl-~v~~~y~~  180 (300)
                      +....+|.--+.| ++....+++|++|.+.+.+.++   ..+.+ +.++.+++||+..|.+.+ ++.+.++ +....|.|
T Consensus        36 ~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg~~h~~~~l~~~s~ll~l~~~~y~~  115 (135)
T d2pa7a1          36 IFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSDCVMMVLASDYYDE  115 (135)
T ss_dssp             EESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTTCEEEEEESSCCCG
T ss_pred             EecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCCEeeeEEecCCCcEEEEEcCCCCCh
Confidence            3345566555666 4567889999999999988332   22444 678889999999999998 4455544 44445544

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.054  Score=50.09  Aligned_cols=73  Identities=7%  Similarity=0.007  Sum_probs=58.0

Q ss_pred             CCcEEEEEEEEcCCCcCCCC---CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEe
Q 022278          101 GSHFVMYLANMQENARSALP---PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER  176 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~~---~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~  176 (300)
                      ...|.+.+-....  +....   ..+|||.+||-+|++.|+- .=-...+++||++.+|.|+.+++.-++++|.++++.
T Consensus       127 ~~G~aihiy~~n~--sM~~~~f~NADGDeLi~~~~Gsg~l~T-efG~L~v~pGDyvVIPRG~~frv~~~~~~r~yiiE~  202 (439)
T d1eyba_         127 NNGLAIHIFLCNT--SMENRCFYNSDGDFLIVPQKGNLLIYT-EFGKMLVQPNEICVIQRGMRFSIDVFEETRGYILEV  202 (439)
T ss_dssp             TCCEEEEEEEECS--CCCSEEEEESSEEEEEEEEESCEEEEE-TTEEEEECTTEEEEECTTCCEEEECSSSEEEEEEEE
T ss_pred             ccCcEEEEEecCC--CCccceeEcCCCCEEEEEEeCcEEEEE-eeeEEEecCCcEEEecCceEEEEecCCCceEEEEee
Confidence            3456666554433  33322   5899999999999999997 666789999999999999999988777899998875

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=95.46  E-value=0.034  Score=45.61  Aligned_cols=81  Identities=17%  Similarity=0.142  Sum_probs=58.7

Q ss_pred             EEEEeeC-CCCCcceEEEEEEecCCcccCcceeecc-ceEEEEEEeeEEEEe-----CC-------EEEEccCCcEEEeC
Q 022278          207 QLRKLLP-QAVPFDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRL-----GD-------SWYPVQAGDVLWMA  272 (300)
Q Consensus       207 ~~~~l~p-~~~~~~~~~~~~tl~PG~~~p~~~~H~~-eh~~~iL~G~G~~~~-----~g-------~~~~v~~GD~i~~~  272 (300)
                      ..|.|+- .+.  .|.+-.+...||..+|. |-|.. .=.+.||+|+...+.     ++       ....+++||+.++.
T Consensus        54 Y~R~li~~~~~--~fel~li~W~pGq~tpi-HDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~  130 (186)
T d3elna1          54 YTRNLVDQGNG--KFNLMILCWGEGHGSSI-HDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYIN  130 (186)
T ss_dssp             CEEEEEECGGG--TCEEEEEEECTTCBCCE-ECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEEC
T ss_pred             cEEEEEEcCCC--CeEEEEEEccCCCcCCC-ccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeC
Confidence            3455553 333  35666899999999997 66754 456789999987653     22       46888999999998


Q ss_pred             CC-CceeEEecCC-ccEEEE
Q 022278          273 PF-VPQWYAALGK-TRTRYL  290 (300)
Q Consensus       273 ~~-~~H~~~n~G~-e~~~fi  290 (300)
                      +. .-|.+.|.+. ++...|
T Consensus       131 ~~~~iH~v~N~~~~~~avsL  150 (186)
T d3elna1         131 DSIGLHRVENVSHTEPAVSL  150 (186)
T ss_dssp             TTTCEEEEECCCSSCCEEEE
T ss_pred             CCCCcceeecCCCCCCeEEE
Confidence            76 4899999984 765544

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=95.29  E-value=0.028  Score=52.15  Aligned_cols=79  Identities=10%  Similarity=0.157  Sum_probs=56.1

Q ss_pred             CCcEEEEEEEEcCCCcCCC--CCCCceEEEEEEECEEEEEEcCC---cEEEeccCcEEEeCCCCceEEeeC--CeEEEEE
Q 022278          101 GSHFVMYLANMQENARSAL--PPHDVERFIFVVQGSAMLTNASG---VSSKLMVDSYTYLPPNFAHSLRAE--GSATLVV  173 (300)
Q Consensus       101 g~~f~~~lv~l~PG~~~~~--~~h~gEEf~yVLeG~v~l~v~gg---~~~~L~~Gds~yfpa~~~H~~~N~--~~a~vl~  173 (300)
                      ...|....+++.++.....  ...++-+.++|++|++++.. ++   .++.|++|+++++||+..-.+.++  +..+-+.
T Consensus       354 ~~~F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~-~~~~~~~~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~  432 (440)
T d1pmia_         354 IAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQI-TGDDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFT  432 (440)
T ss_dssp             SSSCEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEE-TTCGGGCEEEETTCEEEECTTCCEEEEECSSCCSSCCE
T ss_pred             CCceEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEe-cCCCccEEEeCCceEEEEcCCceEEEEeecCCCCCceE
Confidence            3468888888887654322  24566789999999999997 43   368999999999999988777762  2223334


Q ss_pred             EEeeccc
Q 022278          174 FERRYAS  180 (300)
Q Consensus       174 v~~~y~~  180 (300)
                      +-+.|.|
T Consensus       433 ~~rA~~~  439 (440)
T d1pmia_         433 TYRAFVE  439 (440)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            4455554

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=94.38  E-value=0.019  Score=50.68  Aligned_cols=67  Identities=4%  Similarity=0.012  Sum_probs=51.5

Q ss_pred             eEEEEEEecCCcccCcceeeccc-----------eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccE
Q 022278          220 FNIHIMDFQPGDFLNVKEVHYNQ-----------HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT  287 (300)
Q Consensus       220 ~~~~~~tl~PG~~~p~~~~H~~e-----------h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~  287 (300)
                      ..++++.+.||+.|+.| +...+           |+-.+..-.....+|++.++.++|.+-|+....+|+..|.|+++=
T Consensus        91 ~r~~rirL~pGg~I~pH-~D~~~~~~~~~~~~RiHIPL~Tn~~~~f~v~~~~~~m~~Ge~w~~D~~~~H~v~N~sd~dR  168 (290)
T d1e5ra_          91 LQMARSRNLKNAIVIPH-RDFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISR  168 (290)
T ss_dssp             EEEEEEEEEESEEEEEE-CCC--------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSCC
T ss_pred             eeeeeeeecCCcEecCC-cCCccccccCCceEEEEEEeecCCceEEEECCEEEECCCCeEEEEcCCCeEEEECCCCCce
Confidence            34666778899999863 32111           444444456788999999999999999999999999999999763

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.042  Score=44.71  Aligned_cols=54  Identities=11%  Similarity=0.150  Sum_probs=41.0

Q ss_pred             cCCcccCcceeeccceEEEEEEeeEEEEe--C----CE--EEEccCCcEEEeCCCCceeEEec
Q 022278          228 QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--G----DS--WYPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       228 ~PG~~~p~~~~H~~eh~~~iL~G~G~~~~--~----g~--~~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                      -|....-| |-..-||-+|-|+|...+.+  +    |+  ..+|++||+...|+++||+-+-.
T Consensus        41 GPN~R~Dy-H~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~  102 (175)
T d1zvfa1          41 GPNERTDY-HINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRF  102 (175)
T ss_dssp             SSBCCSCE-EECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEEC
T ss_pred             CCCccccc-ccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCC
Confidence            45555555 34455688999999998865  3    33  88899999999999999986653

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=94.04  E-value=0.18  Score=43.10  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=43.0

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEEcC--------------------------------------CcEEEeccCcEE
Q 022278          112 QENARSALPPHDVERFIFVVQGSAMLTNAS--------------------------------------GVSSKLMVDSYT  153 (300)
Q Consensus       112 ~PG~~~~~~~h~gEEf~yVLeG~v~l~v~g--------------------------------------g~~~~L~~Gds~  153 (300)
                      .+|+++..|....+-|+..++|+=...+-.                                      -.+.+|++||.+
T Consensus       130 ~~g~~~~~H~D~~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGDvL  209 (319)
T d1vrba1         130 KNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTML  209 (319)
T ss_dssp             CSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCEE
T ss_pred             CCCCCCccccCCCceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCCEE
Confidence            444455666556789999999988776611                                      024689999999


Q ss_pred             EeCCCCceEEeeCCe
Q 022278          154 YLPPNFAHSLRAEGS  168 (300)
Q Consensus       154 yfpa~~~H~~~N~~~  168 (300)
                      |+|+|-.|..+|.++
T Consensus       210 YiP~gw~H~v~s~~~  224 (319)
T d1vrba1         210 YLPRGLWHSTKSDQA  224 (319)
T ss_dssp             EECTTCEEEEECSSC
T ss_pred             EeCCCceEEeEecCC
Confidence            999999999998443

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.82  E-value=0.077  Score=46.77  Aligned_cols=67  Identities=18%  Similarity=0.331  Sum_probs=49.6

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCc-eEEeeCCeEEEEE
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLRAEGSATLVV  173 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~-H~~~N~~~a~vl~  173 (300)
                      ..|....+++...  ......++-..++|++|++++.. +++++.|++||++++|++.. -.+++  .+++++
T Consensus       245 ~~F~~~~~~~~~~--~~~~~~~~~~il~vi~G~~~i~~-~~~~~~l~~G~~~~ipa~~~~~~i~G--~~~ll~  312 (315)
T d1qwra_         245 EYFSVYKWDINGE--AEMAQDESFLICSVIEGSGLLKY-EDKTCPLKKGDHFILPAQMPDFTIKG--TCTLIV  312 (315)
T ss_dssp             SSCEEEEEEEEEE--EEECCCSSCEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTCCCEEEEE--EEEEEE
T ss_pred             CcEEEEEEEecCc--EEeccCCCcEEEEEEeCeEEEEE-CCEEEEEecCcEEEEECCCCCEEEEe--eEEEEE
Confidence            3577778777632  22223455688999999999998 89999999999999999975 45654  455554

>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Uncharacterized protein Atu1735
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.80  E-value=0.0018  Score=44.19  Aligned_cols=28  Identities=7%  Similarity=-0.020  Sum_probs=26.6

Q ss_pred             CCcccccccCCCCcceeeecCCCCChhh
Q 022278           28 SAPSILDRETSSKPMYWKVTNPTLSPSH   55 (300)
Q Consensus        28 ~~~~~a~r~~lsk~~~Sqver~~~sps~   55 (300)
                      ||+++|+++|+|.+.+|+.|+|.+.|+.
T Consensus        14 tQ~elA~~lGvs~~tvs~~E~G~~~P~~   41 (62)
T d2ppxa1          14 TQEEFSARYHIPLGTLRDWEQGRSEPDQ   41 (62)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHTTSSCCCH
T ss_pred             CHHHHHHHhCCCHHHHHHHHCCCCCCCH
Confidence            7899999999999999999999999975

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=93.59  E-value=0.14  Score=37.34  Aligned_cols=62  Identities=11%  Similarity=0.117  Sum_probs=46.7

Q ss_pred             EEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278          109 ANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  173 (300)
Q Consensus       109 v~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~  173 (300)
                      -.|.||.- +. .-..-|..-|++|++++.+ .|  +..+.++|++|.+|++....++-.+.+..++
T Consensus        27 GVm~pGeY-~F-~T~~~E~MeivsG~l~V~l-pg~~ew~~~~~G~sF~Vpans~F~ikv~~~~~Y~C   90 (93)
T d2oyza1          27 GVMLPGEY-TF-GTQAPERMTVVKGALVVKR-VGEADWTTYSSGESFDVEGNSSFELQVKDATAYLC   90 (93)
T ss_dssp             EEECSEEE-EE-EESSCEEEEEEESEEEEEE-TTCSSCEEEETTCEEEECSSEEEEEEESSCEEEEE
T ss_pred             EEEeccEE-EE-cCCCCEEEEEEeeEEEEEC-CCCcccEEeCCCCeEEECCCCEEEEEECcceeeEE
Confidence            34567732 11 2345788889999999999 54  5589999999999999999999766655554

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=93.50  E-value=0.13  Score=43.90  Aligned_cols=26  Identities=12%  Similarity=0.031  Sum_probs=23.0

Q ss_pred             EEEccCCcEEEeCCCCceeEEecCCc
Q 022278          260 WYPVQAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       260 ~~~v~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      ...++|||++|+|+|..|+..|.++.
T Consensus       200 ~~~L~pGDvLYiP~gw~H~v~s~~~s  225 (319)
T d1vrba1         200 IVNLTPGTMLYLPRGLWHSTKSDQAT  225 (319)
T ss_dssp             EEEECTTCEEEECTTCEEEEECSSCE
T ss_pred             EEEECCCCEEEeCCCceEEeEecCCe
Confidence            45799999999999999999998753

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=93.46  E-value=0.058  Score=43.81  Aligned_cols=53  Identities=15%  Similarity=0.188  Sum_probs=40.3

Q ss_pred             CCcccCcceeeccceEEEEEEeeEEEEe--CC--EEEEccCCcEEEeCCCCceeEEec
Q 022278          229 PGDFLNVKEVHYNQHGLLLLEGQGIYRL--GD--SWYPVQAGDVLWMAPFVPQWYAAL  282 (300)
Q Consensus       229 PG~~~p~~~~H~~eh~~~iL~G~G~~~~--~g--~~~~v~~GD~i~~~~~~~H~~~n~  282 (300)
                      |....-| |-+.-||-+|-|+|...+.+  +|  +.+++++||+...|+++||+-+-.
T Consensus        44 PN~R~Dy-H~~~~eE~FyQlkG~m~Lkv~e~g~~~di~I~EGe~fLLP~~vpHSPqR~  100 (174)
T d1yfua1          44 PNHRTDY-HDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRP  100 (174)
T ss_dssp             CBCCCCE-EECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBC
T ss_pred             CcccCcc-ccCcchhheeeeccceEEEEEeCCceEEEEcCCCcEEEeCCCCCCCcccC
Confidence            3344444 34455678999999998775  34  678999999999999999988653

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.38  E-value=0.32  Score=42.39  Aligned_cols=60  Identities=12%  Similarity=0.253  Sum_probs=44.5

Q ss_pred             CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCce-EEee
Q 022278          102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH-SLRA  165 (300)
Q Consensus       102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H-~~~N  165 (300)
                      ..|....+++.....  ....+.=++++|++|++++.  +++++.|++|+++++|++... ++++
T Consensus       227 ~~F~~~~~~~~~~~~--~~~~~~~~il~~~~G~~~i~--~~~~~~l~~G~s~~iPA~~~~~~i~g  287 (299)
T d1zx5a1         227 ENFGLEVVDVTGTAE--IKTGGVMNILYAAEGYFILR--GKETADLHRGYSCLVPASTDSFTVES  287 (299)
T ss_dssp             SSEEEEEEEEEEEEE--EECCSBCEEEEEEESCEEEE--SSSEEEECTTCEEEECTTCCEEEEEE
T ss_pred             cceEEEEEEecCcEE--eccCCceEEEEEeccEEEEe--CCCEEEEcCCcEEEEecCCccEEEEc
Confidence            458888887754322  12345568899999999875  678899999999999999875 4544

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.19  Score=44.04  Aligned_cols=30  Identities=20%  Similarity=0.133  Sum_probs=24.8

Q ss_pred             EEEEccCCcEEEeCCCCceeEEecCCccEE
Q 022278          259 SWYPVQAGDVLWMAPFVPQWYAALGKTRTR  288 (300)
Q Consensus       259 ~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  288 (300)
                      -...++|||++|+|+|-.|+..|..+..+.
T Consensus       247 ~~~~l~pGd~L~iP~~w~H~V~~~~~~~~s  276 (335)
T d1h2ka_         247 YETVVGPGDVLYIPMYWWHHIESLLNGGIT  276 (335)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEECTTSCCE
T ss_pred             eEEEECCCCEEeeCCCCeEEEEEcCCCCeE
Confidence            345789999999999999999998664433

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=90.87  E-value=0.46  Score=38.79  Aligned_cols=64  Identities=6%  Similarity=0.061  Sum_probs=45.0

Q ss_pred             cCCcccCcce---eeccceEEEEEEeeEEEEe---C------CEEE----EccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278          228 QPGDFLNVKE---VHYNQHGLLLLEGQGIYRL---G------DSWY----PVQAGDVLWMAPFVPQWYAALGKTRTRYLL  291 (300)
Q Consensus       228 ~PG~~~p~~~---~H~~eh~~~iL~G~G~~~~---~------g~~~----~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  291 (300)
                      .+|.-=+.|-   .+.+...+++++|+....+   .      |+|+    .-+.+..+|+|+|+.|+|.+.++ +..++|
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~-~t~i~Y  132 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISD-EATLCY  132 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSS-EEEEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCc-hheeEE
Confidence            5777667642   2345578999999997665   1      3343    44688999999999999999975 334444


Q ss_pred             E
Q 022278          292 Y  292 (300)
Q Consensus       292 ~  292 (300)
                      +
T Consensus       133 ~  133 (190)
T d2c0za1         133 L  133 (190)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.51  E-value=0.27  Score=42.23  Aligned_cols=72  Identities=8%  Similarity=0.218  Sum_probs=48.9

Q ss_pred             EEecCCcccCcceeecc--ceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCce-eEEec-CCccEEE-EEEeecCC
Q 022278          225 MDFQPGDFLNVKEVHYN--QHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ-WYAAL-GKTRTRY-LLYKDVNR  297 (300)
Q Consensus       225 ~tl~PG~~~p~~~~H~~--eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H-~~~n~-G~e~~~f-i~~kd~nr  297 (300)
                      ++|+.+..++. +.--+  |=++..|.|+|.+.+||+.|++.+.|.+|++.|..+ .|... ...+.+| |++-.+++
T Consensus        57 l~l~~~~~~~~-~~flerRElgiVnigG~g~V~VDG~~f~l~~~D~lYvg~G~~~V~f~s~da~~pa~fyi~SAPAh~  133 (260)
T d1ywka1          57 LEIILDKELGV-DYFLERRELGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISCVPAHH  133 (260)
T ss_dssp             EECCCSGGGTS-SSTTTTEEEEEEECSSCEEEEETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEECSS
T ss_pred             eeccCchhccc-hhhhhhcEEEEEEeCCcEEEEECCEEEecCCCcEEEECCCCceEEEeccCCCCCcEEEEEeeccCC
Confidence            45555555553 33322  446788999999999999999999999999998765 33322 2345544 55555544

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.90  E-value=0.29  Score=39.83  Aligned_cols=57  Identities=11%  Similarity=0.181  Sum_probs=39.8

Q ss_pred             cCCcccCccee--eccceEEEEEEeeEEEE-eC--------CEEE--EccC--CcEEEeCCCCceeEEecCC
Q 022278          228 QPGDFLNVKEV--HYNQHGLLLLEGQGIYR-LG--------DSWY--PVQA--GDVLWMAPFVPQWYAALGK  284 (300)
Q Consensus       228 ~PG~~~p~~~~--H~~eh~~~iL~G~G~~~-~~--------g~~~--~v~~--GD~i~~~~~~~H~~~n~G~  284 (300)
                      .+|.-=+.|-+  +.+...+++++|+.... +|        |+|.  .+.+  +..+|+|+|+.|+|.+.++
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~  128 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSE  128 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSS
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCC
Confidence            56776666433  23446799999998533 32        4565  4444  4589999999999999975

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=88.60  E-value=1.5  Score=35.02  Aligned_cols=59  Identities=12%  Similarity=0.158  Sum_probs=42.0

Q ss_pred             ecCCcccCccee---eccceEEEEEEeeEEEEe---------CCEEEEc----cCCcEEEeCCCCceeEEecCCc
Q 022278          227 FQPGDFLNVKEV---HYNQHGLLLLEGQGIYRL---------GDSWYPV----QAGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       227 l~PG~~~p~~~~---H~~eh~~~iL~G~G~~~~---------~g~~~~v----~~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      =.+|.-=+.|-+   +.+...+++++|+....+         -|+|..+    ..+..+|+|+|+.|+|.+..+.
T Consensus        52 s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~  126 (176)
T d1wlta1          52 SRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS  126 (176)
T ss_dssp             ECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE
T ss_pred             echheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeecccc
Confidence            367877676433   233357899999997654         1455543    4566999999999999999874

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.39  E-value=0.64  Score=37.59  Aligned_cols=58  Identities=9%  Similarity=0.100  Sum_probs=39.1

Q ss_pred             cCCcccCccee--eccceEEEEEEeeEEEEe-C--------CEEE--Ecc--CCcEEEeCCCCceeEEecCCc
Q 022278          228 QPGDFLNVKEV--HYNQHGLLLLEGQGIYRL-G--------DSWY--PVQ--AGDVLWMAPFVPQWYAALGKT  285 (300)
Q Consensus       228 ~PG~~~p~~~~--H~~eh~~~iL~G~G~~~~-~--------g~~~--~v~--~GD~i~~~~~~~H~~~n~G~e  285 (300)
                      .+|.-=+.|-+  +.+...+++++|+....+ |        |+|.  .+.  .+..+|+|+|+.|+|.+++++
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~  126 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE  126 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCc
Confidence            56666555433  234567899999985542 2        3443  333  355999999999999999753

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.99  E-value=1.3  Score=32.76  Aligned_cols=68  Identities=10%  Similarity=-0.016  Sum_probs=47.1

Q ss_pred             EEEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcE---EEeccCcEEEeCCCCceEEeeCCeEEEEEEEee
Q 022278          108 LANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVS---SKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  177 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg~~---~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~  177 (300)
                      +-++++|..--......+.+++|++|.+.+.. .+|++   ..+.+||.+-.+  .++.++..++++++++.+.
T Consensus        24 ~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~--~~~~v~A~~~s~v~~i~~~   95 (132)
T d1ft9a2          24 SKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMH--SGCLVEATERTEVRFADIR   95 (132)
T ss_dssp             EEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESC--SSCEEEESSCEEEEEECHH
T ss_pred             EEEecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeecccccccccccc--ccccceeccceeeeeehHH
Confidence            34556775543334567899999999999865 34544   578899976443  4566667788898888544

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.62  E-value=0.98  Score=33.82  Aligned_cols=69  Identities=13%  Similarity=0.143  Sum_probs=43.0

Q ss_pred             EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcC--------C---cEEEeccCcEE-----EeCCCCceEEeeCCeEEE
Q 022278          108 LANMQENARSALPPHDVERFIFVVQGSAMLTNAS--------G---VSSKLMVDSYT-----YLPPNFAHSLRAEGSATL  171 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~g--------g---~~~~L~~Gds~-----yfpa~~~H~~~N~~~a~v  171 (300)
                      ..+++||..--........+++|++|++++...+        +   ....+++|+++     .-..-..++++..+++++
T Consensus        27 ~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~~fGe~~~~~~~~~~~t~~a~~~~~~  106 (147)
T d1cx4a2          27 TKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKC  106 (147)
T ss_dssp             EEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTCEESCHHHHHTCCCSSEEEEEEEEEE
T ss_pred             EEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCcEeeehhhcCCCCceEEEEECCCEEE
Confidence            3456777544333345689999999999986411        1   13567889976     223334445555667788


Q ss_pred             EEEEe
Q 022278          172 VVFER  176 (300)
Q Consensus       172 l~v~~  176 (300)
                      +.+.+
T Consensus       107 ~~i~~  111 (147)
T d1cx4a2         107 LAMDV  111 (147)
T ss_dssp             EEEEH
T ss_pred             EEEEH
Confidence            77743

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=85.46  E-value=1.4  Score=35.13  Aligned_cols=59  Identities=25%  Similarity=0.509  Sum_probs=41.3

Q ss_pred             CCceEEEEEEECEEEEEEcC--------Cc--EEEec--cCcEEEeCCCCceEEee-CCeEEEEEE-Eeeccc
Q 022278          122 HDVERFIFVVQGSAMLTNAS--------GV--SSKLM--VDSYTYLPPNFAHSLRA-EGSATLVVF-ERRYAS  180 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~v~g--------g~--~~~L~--~Gds~yfpa~~~H~~~N-~~~a~vl~v-~~~y~~  180 (300)
                      +....+++|++|++...+-|        |+  ...|.  .+..+|+|+|..|.+.. +..+.++.. ...|.|
T Consensus        67 ~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~~i~Y~~~~~y~p  139 (176)
T d1wlta1          67 KEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFITHNEYSP  139 (176)
T ss_dssp             SCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEEESSCCCG
T ss_pred             CCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccccceEEEecCCccCh
Confidence            45678999999999876521        12  34565  45589999999999998 555555543 445665

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.16  E-value=1.9  Score=35.10  Aligned_cols=60  Identities=20%  Similarity=0.291  Sum_probs=43.0

Q ss_pred             CCceEEEEEEECEEEEEEcC--------Cc--EEEeccC--cEEEeCCCCceEEee-CCeEEEEE-EEeecccc
Q 022278          122 HDVERFIFVVQGSAMLTNAS--------GV--SSKLMVD--SYTYLPPNFAHSLRA-EGSATLVV-FERRYASL  181 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~v~g--------g~--~~~L~~G--ds~yfpa~~~H~~~N-~~~a~vl~-v~~~y~~~  181 (300)
                      +....+++|++|+|...+-|        |+  .+.|.+.  .++|+|+|..|.+.. ++.+.++. +...|.|.
T Consensus        68 ~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i~Y~~s~~y~p~  141 (198)
T d2ixca1          68 PSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAEYNPQ  141 (198)
T ss_dssp             TCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEEESSCCCTT
T ss_pred             chhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCcceeecccCCccCHH
Confidence            46789999999999876522        12  3667764  499999999999998 44455444 45666664

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=84.77  E-value=0.98  Score=32.83  Aligned_cols=50  Identities=20%  Similarity=0.319  Sum_probs=39.3

Q ss_pred             CCceEEEEEEECEEEEEE-c------CCcEEEeccCcEEEeCCCCceEEeeCCeEEE
Q 022278          122 HDVERFIFVVQGSAMLTN-A------SGVSSKLMVDSYTYLPPNFAHSLRAEGSATL  171 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~v-~------gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~v  171 (300)
                      .+.-.-+-||+|+++... .      .+++..+.+|+...++|...|+++-..++++
T Consensus        32 ~Gvwg~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~sdD~~f   88 (96)
T d3dl3a1          32 VDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQF   88 (96)
T ss_dssp             TTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEE
T ss_pred             CceEEEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEeCCCeEE
Confidence            456778899999999852 1      1257899999999999999999986555554

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=84.62  E-value=1.3  Score=38.09  Aligned_cols=55  Identities=16%  Similarity=0.190  Sum_probs=41.8

Q ss_pred             eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC--CccE-EEEEEeecCC
Q 022278          243 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG--KTRT-RYLLYKDVNR  297 (300)
Q Consensus       243 h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G--~e~~-~fi~~kd~nr  297 (300)
                      =++..|.|+|.+.+||+.+++...|.+|++.|-.+..-...  ..+. -||++-.+.|
T Consensus        78 lgiVnlgG~g~V~VDG~~feL~~rd~lYvg~G~~~V~f~s~da~~pa~fyl~SAPAh~  135 (277)
T d1xrua1          78 LGVINIGGAGTITVDGQCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPAHT  135 (277)
T ss_dssp             EEEEECSSCEEEEETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEECSS
T ss_pred             EEEEEeCCCEEEEECCEEEeeCCccEEEeCCCCceEEEeccCCCCCcEEEEEecccCC
Confidence            35788999999999999999999999999999877554322  2344 4466655554

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.26  E-value=2.8  Score=34.10  Aligned_cols=65  Identities=11%  Similarity=0.180  Sum_probs=44.5

Q ss_pred             cCCcccCcceee---ccceEEEEEEeeEEEEe-C--------CEEEE--ccC--CcEEEeCCCCceeEEecCCc-cEEEE
Q 022278          228 QPGDFLNVKEVH---YNQHGLLLLEGQGIYRL-G--------DSWYP--VQA--GDVLWMAPFVPQWYAALGKT-RTRYL  290 (300)
Q Consensus       228 ~PG~~~p~~~~H---~~eh~~~iL~G~G~~~~-~--------g~~~~--v~~--GD~i~~~~~~~H~~~n~G~e-~~~fi  290 (300)
                      .+|.-=+.|-+.   .+...+++++|+....+ |        |+|+.  +.+  +-.||+|+|+.|+|.++++. -+.|.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i~Y~  133 (198)
T d2ixca1          54 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYL  133 (198)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEE
T ss_pred             ehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCcceeecc
Confidence            788877775443   34466889999987663 2        35543  444  44999999999999999763 34444


Q ss_pred             EE
Q 022278          291 LY  292 (300)
Q Consensus       291 ~~  292 (300)
                      +.
T Consensus       134 ~s  135 (198)
T d2ixca1         134 CS  135 (198)
T ss_dssp             ES
T ss_pred             cC
Confidence            43

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=84.14  E-value=2.2  Score=30.85  Aligned_cols=43  Identities=14%  Similarity=0.058  Sum_probs=36.5

Q ss_pred             EEEEEEeeEEEEe----CC----EEEEccCCcEEEeCCCCceeEEecCCcc
Q 022278          244 GLLLLEGQGIYRL----GD----SWYPVQAGDVLWMAPFVPQWYAALGKTR  286 (300)
Q Consensus       244 ~~~iL~G~G~~~~----~g----~~~~v~~GD~i~~~~~~~H~~~n~G~e~  286 (300)
                      -+-||+|+..|..    ++    .+.-+.+|+.-+++|...|-++.++|..
T Consensus        37 ~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~sdD~~   87 (96)
T d3dl3a1          37 QICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQ   87 (96)
T ss_dssp             EEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCE
T ss_pred             EEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEeCCCeE
Confidence            5789999999962    22    7899999999999999999999776665

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.22  E-value=0.9  Score=34.07  Aligned_cols=68  Identities=10%  Similarity=0.062  Sum_probs=44.8

Q ss_pred             EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCc-EEEeccCcEEE----e-CCCCceEEeeCCeEEEEEEEe
Q 022278          108 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGV-SSKLMVDSYTY----L-PPNFAHSLRAEGSATLVVFER  176 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~-~~~L~~Gds~y----f-pa~~~H~~~N~~~a~vl~v~~  176 (300)
                      ..+++||..--......+.+++|++|++++.. +++ ...+++||++=    + ..-...+.+..+++.++.+.+
T Consensus        45 ~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~-~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~  118 (136)
T d1ne6a1          45 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDR  118 (136)
T ss_dssp             EEEECTTCEEECTTSCCCEEEEEEESCEEEEE-TTEEEEEECTTCEECCHHHHHCCCCCSEEEESSCEEEEEEEH
T ss_pred             EEEECCCCEEEeCCCCcceeeeecCCceeeec-cccccceeccccccccHHHcCCCcceEEEEEccCEEEEEEEH
Confidence            45667775443334556799999999999998 544 46899999763    1 222344455566777777743

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.72  E-value=0.79  Score=36.21  Aligned_cols=69  Identities=17%  Similarity=0.117  Sum_probs=45.9

Q ss_pred             EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEE---eCCC--CceEEeeCCeEEEEEEEe
Q 022278          108 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY---LPPN--FAHSLRAEGSATLVVFER  176 (300)
Q Consensus       108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~y---fpa~--~~H~~~N~~~a~vl~v~~  176 (300)
                      ...+.||..--......+.+++|++|++.+...+++...+++||++=   +-.+  ..++++..+.+.++++.+
T Consensus        93 ~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~  166 (193)
T d1q3ea_          93 FEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSV  166 (193)
T ss_dssp             EEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCCEEEECTTCEECHHHHHHCSBCSSEEEESSCEEEEEEEH
T ss_pred             HHhhccCceecccCCCCcceeEeeeeeEEeecCCcceeeeccceeeeeeeccCCCcccccceecCceEEEEEeH
Confidence            33457775443334556899999999999887567778999999873   2122  344555566777777643

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=82.36  E-value=2  Score=30.90  Aligned_cols=60  Identities=15%  Similarity=0.210  Sum_probs=49.3

Q ss_pred             cCCcccCcceeeccceEEEEEEeeEEEEeCC--EEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278          228 QPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  292 (300)
Q Consensus       228 ~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  292 (300)
                      .||.+   .=.-...|.+=|++|+..+.+.|  +|...++|+-.-+|++..=.++.  +++..|+|.
T Consensus        30 ~pGeY---~F~T~~~E~MeivsG~l~V~lpg~~ew~~~~~G~sF~Vpans~F~ikv--~~~~~Y~C~   91 (93)
T d2oyza1          30 LPGEY---TFGTQAPERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQV--KDATAYLCE   91 (93)
T ss_dssp             CSEEE---EEEESSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEE--SSCEEEEEE
T ss_pred             eccEE---EEcCCCCEEEEEEeeEEEEECCCCcccEEeCCCCeEEECCCCEEEEEE--CcceeeEEE
Confidence            47764   22334557899999999999997  89999999999999998888888  588889985

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=82.21  E-value=1.6  Score=32.43  Aligned_cols=49  Identities=16%  Similarity=0.211  Sum_probs=37.8

Q ss_pred             CCceEEEEEEECEEEEE-EcC------CcEEEeccCcEEEeCCCCceEEee-CCeEE
Q 022278          122 HDVERFIFVVQGSAMLT-NAS------GVSSKLMVDSYTYLPPNFAHSLRA-EGSAT  170 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~-v~g------g~~~~L~~Gds~yfpa~~~H~~~N-~~~a~  170 (300)
                      .+.-.-+-||+|+++.. +.+      ++...+.+|+...+||...|+++- ..+++
T Consensus        37 ~Gvwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD~~   93 (109)
T d3bb6a1          37 PGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTY   93 (109)
T ss_dssp             TTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCE
T ss_pred             CcEEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCCCEE
Confidence            45567789999999985 211      345789999999999999999995 33344

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=82.06  E-value=2.2  Score=34.42  Aligned_cols=59  Identities=20%  Similarity=0.355  Sum_probs=40.9

Q ss_pred             CCceEEEEEEECEEEEEEcC--------Cc--EEEe--ccCcEEEeCCCCceEEee-CCeEEEEE-EEeeccc
Q 022278          122 HDVERFIFVVQGSAMLTNAS--------GV--SSKL--MVDSYTYLPPNFAHSLRA-EGSATLVV-FERRYAS  180 (300)
Q Consensus       122 h~gEEf~yVLeG~v~l~v~g--------g~--~~~L--~~Gds~yfpa~~~H~~~N-~~~a~vl~-v~~~y~~  180 (300)
                      +....+++|++|++...+-|        ++  ...|  +.+..+|+|+|..|.+.. .+.+.++. +...|.|
T Consensus        68 ~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y~~s~~y~p  140 (190)
T d2c0za1          68 PGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYLSSGTYDP  140 (190)
T ss_dssp             TCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEESSCCCT
T ss_pred             cchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEEecCCccCc
Confidence            46679999999999876522        22  2344  577899999999999987 55555443 3444444

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.05  E-value=1.4  Score=35.56  Aligned_cols=70  Identities=16%  Similarity=0.274  Sum_probs=46.0

Q ss_pred             cCCCcCCCC----CCCceEEEEEEECEEEEEEcC--------Cc--EEEeccC--cEEEeCCCCceEEee-CCeEEEE-E
Q 022278          112 QENARSALP----PHDVERFIFVVQGSAMLTNAS--------GV--SSKLMVD--SYTYLPPNFAHSLRA-EGSATLV-V  173 (300)
Q Consensus       112 ~PG~~~~~~----~h~gEEf~yVLeG~v~l~v~g--------g~--~~~L~~G--ds~yfpa~~~H~~~N-~~~a~vl-~  173 (300)
                      .+|--.+.|    ++....+++|++|++...+-|        |+  .+.|.+.  .++|+|+|..|.+.. .+.+.++ .
T Consensus        55 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~Y~  134 (183)
T d1dzra_          55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYK  134 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             ccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEEEe
Confidence            455333445    234578999999999876522        22  3667664  499999999999998 4545444 4


Q ss_pred             EEeecccc
Q 022278          174 FERRYASL  181 (300)
Q Consensus       174 v~~~y~~~  181 (300)
                      +...|.|.
T Consensus       135 ~~~~y~p~  142 (183)
T d1dzra_         135 ATNYYSPS  142 (183)
T ss_dssp             ESSCCCTT
T ss_pred             CCcccCcc
Confidence            45556553

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=81.88  E-value=0.42  Score=41.66  Aligned_cols=73  Identities=16%  Similarity=0.093  Sum_probs=48.9

Q ss_pred             cEEEEEEEEcCCCcCCCCCCCc------e---EEEEEEE--CEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEE
Q 022278          103 HFVMYLANMQENARSALPPHDV------E---RFIFVVQ--GSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSAT  170 (300)
Q Consensus       103 ~f~~~lv~l~PG~~~~~~~h~g------E---Ef~yVLe--G~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~  170 (300)
                      ......+.+.||+.-.+|....      +   ++-..|.  -.+.+.+ +++++.+++|++.|+..+.+|...| ....|
T Consensus        90 ~~r~~rirL~pGg~I~pH~D~~~~~~~~~~~~RiHIPL~Tn~~~~f~v-~~~~~~m~~Ge~w~~D~~~~H~v~N~sd~dR  168 (290)
T d1e5ra_          90 HLQMARSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFHSN-EDTVIHMRPGEIWFLDAATVHSAVNFSEISR  168 (290)
T ss_dssp             SEEEEEEEEEESEEEEEECCC--------CBCCEEEECSCCTTEEEEE-TTEEECCCTTEEEECCTTSCEEEEESSSSCC
T ss_pred             eeeeeeeeecCCcEecCCcCCccccccCCceEEEEEEeecCCceEEEE-CCEEEECCCCeEEEEcCCCeEEEECCCCCce
Confidence            3445566677887665552111      1   2333333  2366778 8999999999999999999999999 45567


Q ss_pred             EEEEEe
Q 022278          171 LVVFER  176 (300)
Q Consensus       171 vl~v~~  176 (300)
                      +..|.-
T Consensus       169 IHLViD  174 (290)
T d1e5ra_         169 QSLCVD  174 (290)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            666643

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.62  E-value=1.6  Score=31.65  Aligned_cols=67  Identities=15%  Similarity=0.194  Sum_probs=43.0

Q ss_pred             EEcCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE---EEeccCcEEE----eCCCCceE--EeeCCeEEEEEEEe
Q 022278          110 NMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTY----LPPNFAHS--LRAEGSATLVVFER  176 (300)
Q Consensus       110 ~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v--~gg~~---~~L~~Gds~y----fpa~~~H~--~~N~~~a~vl~v~~  176 (300)
                      ++++|..--......+.+++|++|.+.+..  .+|++   ..+++||++=    +..+.++.  ....++++++.+..
T Consensus        17 ~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~   94 (132)
T d1i5za2          17 KYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISY   94 (132)
T ss_dssp             EECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSEEEESSCEEEEEEEH
T ss_pred             EECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEEEEEccceEEEEEcH
Confidence            456664432234567899999999999875  23444   4578999872    33344443  33477888888843

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=81.51  E-value=0.87  Score=37.14  Aligned_cols=64  Identities=11%  Similarity=0.092  Sum_probs=43.9

Q ss_pred             cCCcccCcceeeccceEEEEE-EeeEEEEeCC--------E--EEEccCCcEEEeCCCCceeEEecCCc-cEEEEEE
Q 022278          228 QPGDFLNVKEVHYNQHGLLLL-EGQGIYRLGD--------S--WYPVQAGDVLWMAPFVPQWYAALGKT-RTRYLLY  292 (300)
Q Consensus       228 ~PG~~~p~~~~H~~eh~~~iL-~G~G~~~~~g--------~--~~~v~~GD~i~~~~~~~H~~~n~G~e-~~~fi~~  292 (300)
                      .+|.-=+. |-|.++..++++ .|+....+.+        +  ...+.++..||+|+|+.|+|....++ .+.|.+.
T Consensus        65 ~kgvlRGl-H~q~~~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~Y~~s  140 (194)
T d1nxma_          65 RKNVLRGL-HAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLVN  140 (194)
T ss_dssp             ETTBEEEE-EECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEES
T ss_pred             eeeEEEEE-EeccchhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEEEecC
Confidence            56776666 345566556665 5876555432        2  36678899999999999999999874 4455543

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=80.56  E-value=1  Score=33.34  Aligned_cols=68  Identities=15%  Similarity=0.177  Sum_probs=45.1

Q ss_pred             EEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEE----eCCC-CceEEeeCCeEEEEEEEe
Q 022278          107 YLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY----LPPN-FAHSLRAEGSATLVVFER  176 (300)
Q Consensus       107 ~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~y----fpa~-~~H~~~N~~~a~vl~v~~  176 (300)
                      ...+++||..--......+.+++|++|.+++.. .+. ..+.+|+++=    +... ..++.+..++++++.+.+
T Consensus        35 ~~~~~~~g~~i~~~G~~~~~~y~I~~G~v~v~~-~~~-~~l~~G~~~G~~~~l~~~~~~~~~~a~~~~~i~~i~~  107 (133)
T d1vp6a_          35 RARTVPAGAVICRIGEPGDRMFFVVEGSVSVAT-PNP-VELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHS  107 (133)
T ss_dssp             EEEEECTTCEEECTTSCCCEEEEEEESCEEECS-SSC-EEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEH
T ss_pred             EEEEECCCCEEEeCCCCCccceeeeccccEEEE-eee-eeeccCcccccccccCCCcccceEEECCCEEEEEEeH
Confidence            455667776543334566899999999999886 544 4699999882    2222 233444467888888743

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.49  E-value=4.5  Score=32.29  Aligned_cols=64  Identities=11%  Similarity=0.116  Sum_probs=43.3

Q ss_pred             cCCcccCcceee---ccceEEEEEEeeEEEEe-C--------CEE--EEccC--CcEEEeCCCCceeEEecCCc-cEEEE
Q 022278          228 QPGDFLNVKEVH---YNQHGLLLLEGQGIYRL-G--------DSW--YPVQA--GDVLWMAPFVPQWYAALGKT-RTRYL  290 (300)
Q Consensus       228 ~PG~~~p~~~~H---~~eh~~~iL~G~G~~~~-~--------g~~--~~v~~--GD~i~~~~~~~H~~~n~G~e-~~~fi  290 (300)
                      .+|.-=+.|-+-   .+...+++++|+....+ |        |+|  ..+.+  +..+|+|+|+.|+|.+.+++ .+.|.
T Consensus        55 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~Y~  134 (183)
T d1dzra_          55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYK  134 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             ccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEEEe
Confidence            688776764321   23467999999997543 2        345  44544  34999999999999999762 34444


Q ss_pred             E
Q 022278          291 L  291 (300)
Q Consensus       291 ~  291 (300)
                      +
T Consensus       135 ~  135 (183)
T d1dzra_         135 A  135 (183)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.27  E-value=4.8  Score=29.23  Aligned_cols=68  Identities=12%  Similarity=0.161  Sum_probs=42.8

Q ss_pred             EEEcCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE---EEeccCcEEE----eCC---CCce--EEeeCCeEEEEEE
Q 022278          109 ANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTY----LPP---NFAH--SLRAEGSATLVVF  174 (300)
Q Consensus       109 v~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v--~gg~~---~~L~~Gds~y----fpa---~~~H--~~~N~~~a~vl~v  174 (300)
                      .++++|..--......+.+++|++|.+.+..  .+|++   ..+.+||.+=    +.+   +.++  +++..++++++.+
T Consensus        15 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~a~~~~~vl~i   94 (134)
T d2oz6a2          15 RRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEI   94 (134)
T ss_dssp             EEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEEE
T ss_pred             EEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccccccceeEEEECCCEEEEEE
Confidence            4556665443334566899999999999875  24454   3668999872    322   2223  3445788888888


Q ss_pred             Ee
Q 022278          175 ER  176 (300)
Q Consensus       175 ~~  176 (300)
                      .+
T Consensus        95 ~~   96 (134)
T d2oz6a2          95 SY   96 (134)
T ss_dssp             EH
T ss_pred             eH
Confidence            43