Citrus Sinensis ID: 022280
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | 2.2.26 [Sep-21-2011] | |||||||
| Q5BJJ6 | 323 | Methionine adenosyltransf | yes | no | 0.9 | 0.835 | 0.246 | 1e-20 | |
| Q5R4E0 | 334 | Methionine adenosyltransf | yes | no | 0.903 | 0.811 | 0.275 | 2e-20 | |
| Q9NZL9 | 334 | Methionine adenosyltransf | yes | no | 0.903 | 0.811 | 0.275 | 2e-20 | |
| Q29RI9 | 334 | Methionine adenosyltransf | yes | no | 0.913 | 0.820 | 0.260 | 3e-19 | |
| Q99LB6 | 334 | Methionine adenosyltransf | yes | no | 0.903 | 0.811 | 0.262 | 1e-18 | |
| Q5U2R0 | 334 | Methionine adenosyltransf | yes | no | 0.903 | 0.811 | 0.262 | 2e-18 | |
| Q566L8 | 334 | Methionine adenosyltransf | yes | no | 0.776 | 0.697 | 0.260 | 2e-17 | |
| Q4QQZ4 | 334 | Methionine adenosyltransf | N/A | no | 0.78 | 0.700 | 0.251 | 2e-16 | |
| P39631 | 283 | Spore coat polysaccharide | yes | no | 0.63 | 0.667 | 0.265 | 3e-11 | |
| P55463 | 296 | Probable dTDP-4-dehydrorh | yes | no | 0.606 | 0.614 | 0.265 | 8e-11 |
| >sp|Q5BJJ6|MAT2B_DANRE Methionine adenosyltransferase 2 subunit beta OS=Danio rerio GN=mat2b PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 139/313 (44%), Gaps = 43/313 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G TG LG+ + + E + +D ++ P F +L
Sbjct: 18 RRVLVTGATGLLGRAVYK---EFKNNDWDALGCGYNRARP-----------FFLKCNLLD 63
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
V F QP V+V+CAA P V E ++AM++NV + + E + L
Sbjct: 64 EDAVRGVIQSF-QPHVIVHCAAERRPDVVERHTEAAMNLNVHACA----TLAKEAGGSFL 118
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++STD V++G Y E D P+N+YGKSK+ E+ I C A+LR I++G +
Sbjct: 119 IYISTDYVFDGRNPPYGENDAPNPLNLYGKSKLEGEREILRHCPGAAVLRVPILFG--EV 176
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
V +S + V E H + R P Y DV ++ + R L +D+ ++ +
Sbjct: 177 EKVEESAVTVLFERVQEGAESCTIDHCQQRFPTYTNDVARVCRNMAERAL-QDQSLRGIF 235
Query: 244 NVGGPDRVSRVQMA--------------------EVDRGVQSPADISMDITKL-VQTLNI 282
+ +++++ +M G Q P + ++ ++L + L++
Sbjct: 236 HYSAKEQMTKYEMTCAIADAFNLPSSHLIPMTEQPAGAGAQRPQNAQLECSRLELLGLSV 295
Query: 283 DPVTYKDGVKLTL 295
+ +K+ ++ +L
Sbjct: 296 ESTPFKNAIRDSL 308
|
Non-catalytic regulatory subunit of S-adenosylmethionine synthetase 2 (MAT2A), an enzyme that catalyzes the formation of S-adenosylmethionine from methionine and ATP. Regulates the activity of S-adenosylmethionine synthetase 2 by changing its kinetic properties, rendering the enzyme more susceptible to S-adenosylmethionine inhibition. Danio rerio (taxid: 7955) |
| >sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii GN=MAT2B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 142/312 (45%), Gaps = 41/312 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLVTGATGLLGRAVHK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ + F QP V+V+CAA P V EN PD+A +NV +S L+ L
Sbjct: 75 SNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+EED AP+N+YGK+K+ EK + E A+LR I+YG +
Sbjct: 132 IYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVDR-------------------GVQSPADISMDITKLVQTLNIDP 284
+ G +++++ +MA G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKL-ETLGIGQ 307
Query: 285 VT-YKDGVKLTL 295
T ++ G+K +L
Sbjct: 308 RTPFRIGIKESL 319
|
Non-catalytic regulatory subunit of S-adenosylmethionine synthetase 2 (MAT2A), an enzyme that catalyzes the formation of S-adenosylmethionine from methionine and ATP. Regulates the activity of S-adenosylmethionine synthetase 2 by changing its kinetic properties, rendering the enzyme more susceptible to S-adenosylmethionine inhibition. Pongo abelii (taxid: 9601) |
| >sp|Q9NZL9|MAT2B_HUMAN Methionine adenosyltransferase 2 subunit beta OS=Homo sapiens GN=MAT2B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 142/312 (45%), Gaps = 41/312 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLVTGATGLLGRAVHK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ + F QP V+V+CAA P V EN PD+A +NV +S L+ L
Sbjct: 75 SNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+EED AP+N+YGK+K+ EK + E A+LR I+YG +
Sbjct: 132 IYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVDR-------------------GVQSPADISMDITKLVQTLNIDP 284
+ G +++++ +MA G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKL-ETLGIGQ 307
Query: 285 VT-YKDGVKLTL 295
T ++ G+K +L
Sbjct: 308 RTPFRIGIKESL 319
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Non-catalytic regulatory subunit of S-adenosylmethionine synthetase 2 (MAT2A), an enzyme that catalyzes the formation of S-adenosylmethionine from methionine and ATP. Regulates the activity of S-adenosylmethionine synthetase 2 by changing its kinetic properties, rendering the enzyme more susceptible to S-adenosylmethionine inhibition. Homo sapiens (taxid: 9606) |
| >sp|Q29RI9|MAT2B_BOVIN Methionine adenosyltransferase 2 subunit beta OS=Bos taurus GN=MAT2B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 142/315 (45%), Gaps = 41/315 (13%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
+ +RVL+ G TG LG+ + + E + + P+ F V+
Sbjct: 26 IPNRRVLITGATGLLGRAVYK---EFQQNNWHAVGCGFRRARPK-----------FEQVN 71
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
L + + F QP V+V+CAA P V EN PD+A +NV +S L+
Sbjct: 72 LLDSNAVHHIIYDF-QPHVIVHCAAERRPDVVENHPDAASQLNVDAS--GNLAKEAAAIG 128
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
LI++S+D V++G Y+EED P+N+YGK+K+ EK + E A+LR ++YG
Sbjct: 129 AFLIYISSDYVFDGTNPPYREEDIPNPLNLYGKTKLEGEKAVLENNLGAAVLRIPVLYG- 187
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQ 240
+ + +S D V + H + R P +V+DV + L + + D ++
Sbjct: 188 -EVERLEESAVTIMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIK 245
Query: 241 LLLNVGGPDRVSRVQMAEVDR-------------------GVQSPADISMDITKLVQTLN 281
+ G +++++ +MA G Q P + +D ++L +TL
Sbjct: 246 GTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVVGAQRPRNAQLDCSRL-ETLG 304
Query: 282 IDPVT-YKDGVKLTL 295
I T ++ G+K +L
Sbjct: 305 IGQRTPFRIGIKESL 319
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Non-catalytic regulatory subunit of S-adenosylmethionine synthetase 2 (MAT2A), an enzyme that catalyzes the formation of S-adenosylmethionine from methionine and ATP. Regulates the activity of S-adenosylmethionine synthetase 2 by changing its kinetic properties, rendering the enzyme more susceptible to S-adenosylmethionine inhibition. Bos taurus (taxid: 9913) |
| >sp|Q99LB6|MAT2B_MOUSE Methionine adenosyltransferase 2 subunit beta OS=Mus musculus GN=Mat2b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 140/312 (44%), Gaps = 41/312 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVL+ G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLITGATGLLGRAVYK---EFQQSNWHTVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ F QP V+V+CAA P V E+ PD+A +NV +S L+ L
Sbjct: 75 SEAVHHLIHDF-QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y EED +P+N+YGK+K+ EK + E A+LR ++YG +
Sbjct: 132 IYISSDYVFDGTNPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVDR-------------------GVQSPADISMDITKLVQTLNIDP 284
+ G +++++ +MA G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVIGAQRPKNAQLDCSKL-ETLGIGQ 307
Query: 285 VT-YKDGVKLTL 295
T ++ G+K +L
Sbjct: 308 RTPFRTGIKESL 319
|
Non-catalytic regulatory subunit of S-adenosylmethionine synthetase 2 (MAT2A), an enzyme that catalyzes the formation of S-adenosylmethionine from methionine and ATP. Regulates the activity of S-adenosylmethionine synthetase 2 by changing its kinetic properties, rendering the enzyme more susceptible to S-adenosylmethionine inhibition. Mus musculus (taxid: 10090) |
| >sp|Q5U2R0|MAT2B_RAT Methionine adenosyltransferase 2 subunit beta OS=Rattus norvegicus GN=Mat2b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 140/312 (44%), Gaps = 41/312 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVL+ G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLITGATGLLGRAVYK---EFQQSNWHAVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ F QP V+V+CAA P V E+ PD+A +NV +S L+ L
Sbjct: 75 SEAVHHLIHDF-QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y EED +P+N+YGK+K+ EK + E A+LR ++YG +
Sbjct: 132 IYISSDYVFDGTNPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVDR-------------------GVQSPADISMDITKLVQTLNIDP 284
+ G +++++ +MA G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVIGAQRPKNAQLDCSKL-ETLGIGQ 307
Query: 285 VT-YKDGVKLTL 295
T ++ G+K +L
Sbjct: 308 RTPFRIGIKESL 319
|
Non-catalytic regulatory subunit of S-adenosylmethionine synthetase 2 (MAT2A), an enzyme that catalyzes the formation of S-adenosylmethionine from methionine and ATP. Regulates the activity of S-adenosylmethionine synthetase 2 by changing its kinetic properties, rendering the enzyme more susceptible to S-adenosylmethionine inhibition. Rattus norvegicus (taxid: 10116) |
| >sp|Q566L8|MAT2B_XENTR Methionine adenosyltransferase 2 subunit beta OS=Xenopus tropicalis GN=mat2b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 20/253 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+R L+ G TG LG+ + + E + + V +S P+ F ++L
Sbjct: 29 RRALITGATGLLGRAVYK---EFKENSWHVLGCGYSRARPR-----------FEYLNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ A+ F +P V+++CAA P + E+ P+ A +NV +S L+ L
Sbjct: 75 AAAVKALIQDF-KPHVIIHCAAERRPDIVESQPEFASLLNVVAS--ENLAKEAAGVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+E+ P+N+YGK+K+ E+ + A+LR ++YG +
Sbjct: 132 IYVSSDYVFDGTSPPYREDSVPNPLNLYGKTKLEGERAVLHNNEGAAVLRVPVLYG--DV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P YV+DV + L LT R L +D ++ +
Sbjct: 190 EKLSESAVTILFDKVQFSNKSANMDHWQQRFPTYVKDVASVCLQLTERRL-QDPSIKGIY 248
Query: 244 NVGGPDRVSRVQM 256
+ G +++++ +M
Sbjct: 249 HWSGNEQMTKYEM 261
|
Non-catalytic regulatory subunit of S-adenosylmethionine synthetase 2 (MAT2A), an enzyme that catalyzes the formation of S-adenosylmethionine from methionine and ATP. Regulates the activity of S-adenosylmethionine synthetase 2 by changing its kinetic properties, rendering the enzyme more susceptible to S-adenosylmethionine inhibition. Xenopus tropicalis (taxid: 8364) |
| >sp|Q4QQZ4|MAT2B_XENLA Methionine adenosyltransferase 2 subunit beta OS=Xenopus laevis GN=mat2b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 125/254 (49%), Gaps = 20/254 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+R L+ G TG LG+ + + E + + V +S P+ F ++L
Sbjct: 29 RRALITGATGLLGRAVYK---EFKENSWHVLGCGYSRARPR-----------FECLNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ A+ F +P V+++CAA P + E+ P+ A +NV +S L+ L
Sbjct: 75 EAAVKALIQDF-KPHVIIHCAAERRPDIVESQPELASLLNVVAS--ENLAKVAAGVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+E+ P+N+YGK+K+ E+ + + A+LR ++YG +
Sbjct: 132 IYVSSDYVFDGTSPPYREDSIPHPLNLYGKTKLDGERAVLQNNEGAAVLRVPVMYG--DV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L LT R + +D ++ +
Sbjct: 190 EKLSESAVTILFDKVQFSNKSANLDHCQQRFPTHVKDVATVCLQLTERKI-QDPSIKGIY 248
Query: 244 NVGGPDRVSRVQMA 257
+ G +++++ ++A
Sbjct: 249 HWSGNEQMTKYEIA 262
|
Non-catalytic regulatory subunit of S-adenosylmethionine synthetase 2 (MAT2A), an enzyme that catalyzes the formation of S-adenosylmethionine from methionine and ATP. Regulates the activity of S-adenosylmethionine synthetase 2 by changing its kinetic properties, rendering the enzyme more susceptible to S-adenosylmethionine inhibition. Xenopus laevis (taxid: 8355) |
| >sp|P39631|SPSK_BACSU Spore coat polysaccharide biosynthesis protein SpsK OS=Bacillus subtilis (strain 168) GN=spsK PE=3 SV=3 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 41/230 (17%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD-----ALPHSFVFFDV 59
+VLV G G LG L + L + Y+V A L + +++ ++ HSF +
Sbjct: 3 KVLVTGAGGQLGLELCRQLKQ---AGYEVIA------LTKKMMNIADQRSVRHSFGHY-- 51
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
QPD+VVN AA + CE + D A IN + L S
Sbjct: 52 ----------------QPDIVVNSAAFTSVDQCEKELDKAYLINGIGAYYTALESTRIGA 95
Query: 120 ENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
+ +H+STD V+ G + Y+E+D + P +YGKSK E+ I + I+R+S +Y
Sbjct: 96 Q--YVHISTDYVFNGKGTQPYREDDPLDPKTIYGKSKRLGEELIRLTTKDSTIIRTSWVY 153
Query: 179 GPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILAL 228
G + V L + +++ D+ P Y +D+ + ++ L
Sbjct: 154 GHGGSNFVETMLKLA------ETKQELRVVSDQIGSPTYTKDLAEAVIKL 197
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P55463|RMLD_RHISN Probable dTDP-4-dehydrorhamnose reductase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03570 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 10/192 (5%)
Query: 69 AVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128
A +++ PD++V+ AA + E++P A ++N V L+ +IHLST
Sbjct: 43 ASSIRDAAPDIIVSLAAYTAVDKAESEPYEAFAVNRDG--VQALAEAAAGLGVPVIHLST 100
Query: 129 DQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVP 187
D V++G K Y EED P++VYG+SK+ E + N ILR+S +Y + V
Sbjct: 101 DYVFDGAKPVPYCEEDRTGPISVYGRSKLEGEFAVASANPNHTILRTSWVYSRYGQNFVK 160
Query: 188 KSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDK-QMQLLLNVG 246
K L + +++ D+ CP D+ ++ + R LS ++ + ++
Sbjct: 161 KMLRLA------DTNDELNVVADQLGCPTSADDISVAVMTIARRMLSSSSADLRGIFHLS 214
Query: 247 GPDRVSRVQMAE 258
G S A+
Sbjct: 215 GSGEASWAAFAK 226
|
Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. RmlD uses NADH and NADPH nearly equally well. Rhizobium sp. (strain NGR234) (taxid: 394) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 3 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | ||||||
| 255541506 | 318 | dtdp-4-dehydrorhamnose dehydrogenase, pu | 0.97 | 0.915 | 0.715 | 1e-125 | |
| 357514671 | 317 | Methionine adenosyltransferase 2 subunit | 0.983 | 0.930 | 0.708 | 1e-122 | |
| 225454083 | 318 | PREDICTED: methionine adenosyltransferas | 0.99 | 0.933 | 0.684 | 1e-120 | |
| 297810115 | 323 | predicted protein [Arabidopsis lyrata su | 0.99 | 0.919 | 0.676 | 1e-119 | |
| 356520448 | 324 | PREDICTED: methionine adenosyltransferas | 0.99 | 0.916 | 0.682 | 1e-119 | |
| 449454474 | 314 | PREDICTED: methionine adenosyltransferas | 0.98 | 0.936 | 0.652 | 1e-116 | |
| 449507663 | 314 | PREDICTED: methionine adenosyltransferas | 0.98 | 0.936 | 0.649 | 1e-116 | |
| 30678677 | 327 | Rossmann-fold NAD(P)-binding domain-cont | 0.983 | 0.902 | 0.653 | 1e-115 | |
| 334186246 | 331 | Rossmann-fold NAD(P)-binding domain-cont | 0.983 | 0.891 | 0.645 | 1e-115 | |
| 110736655 | 327 | putative dTDP-6-deoxy-L-mannose-dehydrog | 0.983 | 0.902 | 0.65 | 1e-114 |
| >gi|255541506|ref|XP_002511817.1| dtdp-4-dehydrorhamnose dehydrogenase, putative [Ricinus communis] gi|223548997|gb|EEF50486.1| dtdp-4-dehydrorhamnose dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/316 (71%), Positives = 258/316 (81%), Gaps = 25/316 (7%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS--TPLPQLLLDALPHSFVFFDV 59
+KK+VLVVGGTGYLGQHLLQGLSEIE PYD+A THHS TP PQ LLDA+ HS F V
Sbjct: 3 TKKKVLVVGGTGYLGQHLLQGLSEIEDSPYDLAFTHHSNSTP-PQPLLDAVRHS-PSFHV 60
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
DL++G GF A+ +FGQPDVVVNCAA+S+PR CE DP +AMSIN+PSSLVNWLS+F E +
Sbjct: 61 DLQTGDGFQAITHEFGQPDVVVNCAAISLPRACEKDPATAMSINIPSSLVNWLSTF-EGR 119
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
+ LLIHLSTDQVYEGVKSFYKEEDE PVNVYGKSK+ AEKFI E+C NF ILRSSII+G
Sbjct: 120 DTLLIHLSTDQVYEGVKSFYKEEDEAVPVNVYGKSKLEAEKFISERCLNFVILRSSIIFG 179
Query: 180 PQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQM 239
PQTISPVPKSLPIQWIDSVLSKGE++EFFHDE RCPVYV+DVV +IL+LTNRW+SE KQM
Sbjct: 180 PQTISPVPKSLPIQWIDSVLSKGEQIEFFHDEFRCPVYVKDVVAVILSLTNRWISESKQM 239
Query: 240 QLLLNVGGPDRVSRVQMAE--------------------VDRGVQSPADISMDITKLVQT 279
QLLLNVGGPDRVSRVQMAE VDRGV SPADISM+I+++V+
Sbjct: 240 QLLLNVGGPDRVSRVQMAEAVADIRGYNSALIKSVSAASVDRGVLSPADISMNISRIVRE 299
Query: 280 LNIDPVTYKDGVKLTL 295
L+ P ++ GVKLTL
Sbjct: 300 LHFSPTPFRHGVKLTL 315
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357514671|ref|XP_003627624.1| Methionine adenosyltransferase 2 subunit beta [Medicago truncatula] gi|355521646|gb|AET02100.1| Methionine adenosyltransferase 2 subunit beta [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/319 (70%), Positives = 253/319 (79%), Gaps = 24/319 (7%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
MSKK++L+VGGTGYLGQHLLQ S + VA T+HS+PL Q LLDA P S F VD
Sbjct: 1 MSKKKILIVGGTGYLGQHLLQ--SYYSNQSLTVAFTYHSSPLLQPLLDAFPDS-QSFQVD 57
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
LKSG GFDA++ FGQPDVVVNCAA+SVPR CENDPD+A +INVPSSLV WL SF +N
Sbjct: 58 LKSGIGFDAISNAFGQPDVVVNCAAISVPRACENDPDTANAINVPSSLVKWLQSFKQN-S 116
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
LLIHLSTDQVYEG KSFYKEED PVNVYGK+KVAAEKFI E NFAILRSSIIYGP
Sbjct: 117 TLLIHLSTDQVYEGEKSFYKEEDIPIPVNVYGKTKVAAEKFISENFPNFAILRSSIIYGP 176
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQ 240
QT+SPVPKSLPIQWIDS LSK EKV FFHDE RCP++V+D+V IILALT++WLSE KQMQ
Sbjct: 177 QTVSPVPKSLPIQWIDSALSKREKVNFFHDEFRCPIFVKDLVTIILALTSQWLSEGKQMQ 236
Query: 241 LLLNVGGPDRVSRVQMAE--------------------VDRGVQSPADISMDITKLVQTL 280
LLLN GGPDRVSRV+MA+ VDRGV+SPADISMDIT+LVQTL
Sbjct: 237 LLLNAGGPDRVSRVEMADAVAQFRGYDTSLIKAVSASTVDRGVKSPADISMDITRLVQTL 296
Query: 281 NIDPVTYKDGVKLTLAAEA 299
NI+PV++KDGVKLTL EA
Sbjct: 297 NINPVSFKDGVKLTLTTEA 315
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454083|ref|XP_002266457.1| PREDICTED: methionine adenosyltransferase 2 subunit beta isoform 1 [Vitis vinifera] gi|297745208|emb|CBI40288.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/320 (68%), Positives = 255/320 (79%), Gaps = 23/320 (7%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
MSKKRVLVVGGTGYLGQHLLQG SEI+G P+D+A THHSTP PQ L+ A+PHS F V+
Sbjct: 1 MSKKRVLVVGGTGYLGQHLLQGFSEIQGHPFDLAFTHHSTP-PQPLVHAIPHSRAF-HVN 58
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
L+SG GF+A++ FGQP VVVNCAA+SVPR CE DP +AMSINVPSSLV WL SF E+
Sbjct: 59 LQSGEGFEAISRSFGQPHVVVNCAAISVPRSCEMDPAAAMSINVPSSLVKWLLSFEESN- 117
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
LLIHLSTDQVYEGVKSFYKEEDE PVNVYGKSKVAAE+FI SN+AILRSSII GP
Sbjct: 118 TLLIHLSTDQVYEGVKSFYKEEDETVPVNVYGKSKVAAEQFISTNFSNYAILRSSIIIGP 177
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQ 240
Q ISPVPKSLPIQWID VLS+G+K++FF+DE RCPVYV+DVV IILALT W++E KQM+
Sbjct: 178 QAISPVPKSLPIQWIDGVLSRGDKMDFFYDEFRCPVYVKDVVAIILALTTGWIAEGKQMK 237
Query: 241 LLLNVGGPDRVSRVQMAE--------------------VDRGVQSPADISMDITKLVQTL 280
L+LN GGPDRVSR Q+AE VDRGV+SP DISMDIT+L+QTL
Sbjct: 238 LILNAGGPDRVSRAQIAETVADVRGYDTSLIKPVSASSVDRGVKSPVDISMDITELIQTL 297
Query: 281 NIDPVTYKDGVKLTLAAEAT 300
+I P + + GV+LTL ++A+
Sbjct: 298 HISPTSLRVGVQLTLESQAS 317
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810115|ref|XP_002872941.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318778|gb|EFH49200.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/321 (67%), Positives = 252/321 (78%), Gaps = 24/321 (7%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKP-YDVAATHHSTPLPQLLLDALPHSFVFFDV 59
M K +V++VGGTG+LGQHLLQ + G YDVA THHS+PLP+ LLDA PH F F V
Sbjct: 1 MDKTKVVIVGGTGFLGQHLLQAFAGNNGGDLYDVAFTHHSSPLPRRLLDAFPH-FPAFSV 59
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
DLKSG GF++++ FGQPDVVVNCAALSVPR CE DPDSAMSINVP+SLVNWLS+F NK
Sbjct: 60 DLKSGLGFNSISQDFGQPDVVVNCAALSVPRACEQDPDSAMSINVPTSLVNWLSTFERNK 119
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
LLIHLSTDQVYEGVKSFYKEEDE VNVYGKSKVAAE I +KC NFAILRSSII G
Sbjct: 120 -TLLIHLSTDQVYEGVKSFYKEEDETVAVNVYGKSKVAAELLIKDKCQNFAILRSSIIVG 178
Query: 180 PQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW-LSEDKQ 238
PQT+SP+PK+LPIQWIDS L KG+ VEFFHDE RCP+YV+D+V I L L +RW +S++KQ
Sbjct: 179 PQTVSPLPKTLPIQWIDSSLKKGDTVEFFHDEFRCPIYVKDLVNITLKLIDRWVVSDEKQ 238
Query: 239 MQLLLNVGGPDRVSRVQMAE--------------------VDRGVQSPADISMDITKLVQ 278
MQL+LN GGP+R+SRVQMA+ VDRGV SPADISMDITKL+Q
Sbjct: 239 MQLVLNAGGPERLSRVQMAQVVAEVRGYDMSLIKHVSASSVDRGVVSPADISMDITKLIQ 298
Query: 279 TLNIDPVTYKDGVKLTLAAEA 299
TL I P ++KDGV+LTL +E+
Sbjct: 299 TLEITPTSFKDGVRLTLESES 319
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520448|ref|XP_003528874.1| PREDICTED: methionine adenosyltransferase 2 subunit beta-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/324 (68%), Positives = 251/324 (77%), Gaps = 27/324 (8%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIE---GKPY--DVAATHHSTPLPQLLLDALPHSFV 55
MSK ++LVVGGTGYLGQHLLQ G P+ D+A THHS+P PQ LLDA+P S
Sbjct: 1 MSKVKILVVGGTGYLGQHLLQAYVHANANNGTPFAFDLAFTHHSSPPPQPLLDAIPFSLP 60
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
F VDLK+G GF+A++ FGQPDVVVNCAA+SVPR CE DP +A +INVPSSLV WL SF
Sbjct: 61 F-QVDLKTGFGFEAISNTFGQPDVVVNCAAISVPRACEIDPATAHAINVPSSLVKWLQSF 119
Query: 116 TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSS 175
E + LLIHLSTDQVYEG KSFYKEED PVNVYGK+KVAAE+FI E NFAILRSS
Sbjct: 120 -EKRSTLLIHLSTDQVYEGEKSFYKEEDIAVPVNVYGKTKVAAEQFISENYPNFAILRSS 178
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
IIYGPQT+SPVPKSLPIQWID L+KGEKVEFFHDE RCP+YV+D+V IIL LT++W+SE
Sbjct: 179 IIYGPQTVSPVPKSLPIQWIDGALAKGEKVEFFHDEFRCPIYVKDLVTIILTLTSQWISE 238
Query: 236 DKQMQLLLNVGGPDRVSRVQMAE--------------------VDRGVQSPADISMDITK 275
KQMQLLLNVGG DRVSR+QMAE VDRGV+SPADISMDIT+
Sbjct: 239 GKQMQLLLNVGGADRVSRLQMAEAVAEFRGYDASLIKSVSASSVDRGVKSPADISMDITR 298
Query: 276 LVQTLNIDPVTYKDGVKLTLAAEA 299
LVQTL I PV++KDGV+LTL EA
Sbjct: 299 LVQTLRIHPVSFKDGVRLTLTTEA 322
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454474|ref|XP_004144979.1| PREDICTED: methionine adenosyltransferase 2 subunit beta-like [Cucumis sativus] gi|449472854|ref|XP_004153715.1| PREDICTED: methionine adenosyltransferase 2 subunit beta-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/317 (65%), Positives = 246/317 (77%), Gaps = 23/317 (7%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
M KK+VLVVGGTGYLGQHLL G SEI+G PYD+A T+HS P+ LL ALPH + F VD
Sbjct: 1 MRKKKVLVVGGTGYLGQHLLSGFSEIDGVPYDIAFTYHSFA-PEALLGALPH-LLSFQVD 58
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
LKSG GFD + FGQPD+VVNCAA+SVPR CE DP SA S+NVP+++ WL SF E +
Sbjct: 59 LKSGQGFDTITENFGQPDIVVNCAAISVPRACEVDPVSAFSVNVPTAIGTWLLSF-EGRN 117
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
L IHLSTDQVYEGV+SFY EEDE PVNVYGKSK+AAE+++ EK SNFAILRSSII+GP
Sbjct: 118 TLFIHLSTDQVYEGVESFYNEEDETIPVNVYGKSKLAAEQYVSEKFSNFAILRSSIIFGP 177
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQ 240
QTISPVPKSLP+QWID+ LS+G +VEFFHDE RCPVYV+DVV +I+ L W+SE KQMQ
Sbjct: 178 QTISPVPKSLPVQWIDATLSEGNEVEFFHDEFRCPVYVKDVVNVIITLIKTWISEGKQMQ 237
Query: 241 LLLNVGGPDRVSRVQMAE--------------------VDRGVQSPADISMDITKLVQTL 280
LLLNVGGP+RVSRV+MAE +DRGV+SPADISM+I KL+Q L
Sbjct: 238 LLLNVGGPNRVSRVEMAETVAEIRGHKKSLIKRVSASSIDRGVKSPADISMNIGKLIQIL 297
Query: 281 NIDPVTYKDGVKLTLAA 297
+ PV++ DGV+LTL +
Sbjct: 298 AMSPVSFTDGVRLTLCS 314
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507663|ref|XP_004163095.1| PREDICTED: methionine adenosyltransferase 2 subunit beta-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/317 (64%), Positives = 246/317 (77%), Gaps = 23/317 (7%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
M KK+VLVVGGTGYLGQHLL G SEI+G PYD+A T+HS P+ LL ALPH + F VD
Sbjct: 1 MRKKKVLVVGGTGYLGQHLLSGFSEIDGVPYDIAFTYHSFA-PEALLGALPH-LLSFQVD 58
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
LKSG GFD + FGQPD+VVNCAA+SVPR CE DP SA S+NVP+++ WL SF E +
Sbjct: 59 LKSGQGFDTITENFGQPDIVVNCAAISVPRACEVDPVSAFSVNVPTAIGTWLLSF-EGRN 117
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
L IHLSTDQVYEGV+SFY EEDE P+NVYGKSK+AAE+++ EK SNFAILRSSII+GP
Sbjct: 118 TLFIHLSTDQVYEGVESFYNEEDETIPLNVYGKSKLAAEQYVSEKFSNFAILRSSIIFGP 177
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQ 240
QTISPVPKSLP+QWID+ LS+G +VEFFHDE RCPVYV+DVV +I+ L W+SE KQMQ
Sbjct: 178 QTISPVPKSLPVQWIDATLSEGNEVEFFHDEFRCPVYVKDVVNVIITLIKTWISEGKQMQ 237
Query: 241 LLLNVGGPDRVSRVQMAE--------------------VDRGVQSPADISMDITKLVQTL 280
LLLNVGGP+RVSRV+MAE +DRGV+SPADISM+I KL+Q L
Sbjct: 238 LLLNVGGPNRVSRVEMAETVAEIRGHKKSLIKRVSASSIDRGVKSPADISMNIGKLIQIL 297
Query: 281 NIDPVTYKDGVKLTLAA 297
+ PV++ DGV+LTL +
Sbjct: 298 AMSPVSFTDGVRLTLCS 314
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30678677|ref|NP_191965.2| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|332656499|gb|AEE81899.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/320 (65%), Positives = 248/320 (77%), Gaps = 25/320 (7%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEG---KPYDVAATHHSTPLPQLLLDALPHSFVFFDV 59
K +VL+VGGTGYLGQHLLQ + G + YDVA THHS+PLP LLDA PHS F V
Sbjct: 4 KTKVLIVGGTGYLGQHLLQAFAGNYGGECELYDVAFTHHSSPLPARLLDAFPHSPAF-PV 62
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
DLKSG G ++++ F QPDVVVNCAALSVPR CE DPDSAMSINVP+SLVNWLSSF NK
Sbjct: 63 DLKSGLGLNSISQDFRQPDVVVNCAALSVPRACEQDPDSAMSINVPTSLVNWLSSFETNK 122
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
LLIHLSTDQVY+GVKSFYKEEDE VNVYGKSKVAAE I +KC +FAILRSSII+G
Sbjct: 123 -TLLIHLSTDQVYQGVKSFYKEEDETVAVNVYGKSKVAAELLIKDKCQSFAILRSSIIFG 181
Query: 180 PQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQM 239
PQT+SP+PK+LPIQWIDS L KG+ V+FFHDE RCP+YV+D+V I L +RW+S+DKQM
Sbjct: 182 PQTVSPLPKTLPIQWIDSSLKKGDTVDFFHDEFRCPIYVKDLVNITFKLIDRWVSDDKQM 241
Query: 240 QLLLNVGGPDRVSRVQMAE--------------------VDRGVQSPADISMDITKLVQT 279
+L+LN GGP+R+SRVQMA+ +DRGV SPADISMDITKL+ T
Sbjct: 242 RLVLNAGGPERLSRVQMAQMVAEVRGYDLSLIKHVSASSIDRGVVSPADISMDITKLIHT 301
Query: 280 LNIDPVTYKDGVKLTLAAEA 299
L + P ++K+GV+LTL +E+
Sbjct: 302 LELSPTSFKEGVRLTLDSES 321
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186246|ref|NP_001190643.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|332656502|gb|AEE81902.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/324 (64%), Positives = 248/324 (76%), Gaps = 29/324 (8%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEG---KPYDVAATHHSTPLPQLLLDALPHSFVFFDV 59
K +VL+VGGTGYLGQHLLQ + G + YDVA THHS+PLP LLDA PHS F V
Sbjct: 4 KTKVLIVGGTGYLGQHLLQAFAGNYGGECELYDVAFTHHSSPLPARLLDAFPHSPAF-PV 62
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
DLKSG G ++++ F QPDVVVNCAALSVPR CE DPDSAMSINVP+SLVNWLSSF NK
Sbjct: 63 DLKSGLGLNSISQDFRQPDVVVNCAALSVPRACEQDPDSAMSINVPTSLVNWLSSFETNK 122
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
LLIHLSTDQVY+GVKSFYKEEDE VNVYGKSKVAAE I +KC +FAILRSSII+G
Sbjct: 123 -TLLIHLSTDQVYQGVKSFYKEEDETVAVNVYGKSKVAAELLIKDKCQSFAILRSSIIFG 181
Query: 180 PQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQM 239
PQT+SP+PK+LPIQWIDS L KG+ V+FFHDE RCP+YV+D+V I L +RW+S+DKQM
Sbjct: 182 PQTVSPLPKTLPIQWIDSSLKKGDTVDFFHDEFRCPIYVKDLVNITFKLIDRWVSDDKQM 241
Query: 240 QLLLNVGGPDRVSRVQMA------------------------EVDRGVQSPADISMDITK 275
+L+LN GGP+R+SRVQMA ++DRGV SPADISMDITK
Sbjct: 242 RLVLNAGGPERLSRVQMAQMVAEVRGYDLSLIKHVSASSLFCQIDRGVVSPADISMDITK 301
Query: 276 LVQTLNIDPVTYKDGVKLTLAAEA 299
L+ TL + P ++K+GV+LTL +E+
Sbjct: 302 LIHTLELSPTSFKEGVRLTLDSES 325
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110736655|dbj|BAF00291.1| putative dTDP-6-deoxy-L-mannose-dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/320 (65%), Positives = 247/320 (77%), Gaps = 25/320 (7%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEG---KPYDVAATHHSTPLPQLLLDALPHSFVFFDV 59
K +VL+VGGTGYLGQHLLQ + G + YDVA THHS+PLP LLDA PHS F V
Sbjct: 4 KTKVLIVGGTGYLGQHLLQAFAGNYGGECELYDVAFTHHSSPLPARLLDAFPHSPAF-PV 62
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
DLKSG G ++++ F QPDVVVNCAALSVPR CE DPDSAMSINVP+SLVNWLSSF NK
Sbjct: 63 DLKSGLGLNSISQDFRQPDVVVNCAALSVPRACEQDPDSAMSINVPTSLVNWLSSFETNK 122
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
LLIHLSTDQVY+GVKSFYKEEDE VNVYGKSKVAAE I +KC +FAIL SSII+G
Sbjct: 123 -TLLIHLSTDQVYQGVKSFYKEEDETVAVNVYGKSKVAAELLIKDKCQSFAILGSSIIFG 181
Query: 180 PQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQM 239
PQT+SP+PK+LPIQWIDS L KG+ V+FFHDE RCP+YV+D+V I L +RW+S+DKQM
Sbjct: 182 PQTVSPLPKTLPIQWIDSSLKKGDTVDFFHDEFRCPIYVKDLVNITFKLIDRWVSDDKQM 241
Query: 240 QLLLNVGGPDRVSRVQMAE--------------------VDRGVQSPADISMDITKLVQT 279
+L+LN GGP+R+SRVQMA+ +DRGV SPADISMDITKL+ T
Sbjct: 242 RLVLNAGGPERLSRVQMAQMVAEVRGYDLSLIKHVSASSIDRGVVSPADISMDITKLIHT 301
Query: 280 LNIDPVTYKDGVKLTLAAEA 299
L + P ++K+GV+LTL +E+
Sbjct: 302 LELSPTSFKEGVRLTLDSES 321
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | ||||||
| MGI|MGI:1913667 | 334 | Mat2b "methionine adenosyltran | 0.59 | 0.529 | 0.302 | 8.2e-21 | |
| UNIPROTKB|I3LU04 | 325 | MAT2B "Uncharacterized protein | 0.783 | 0.723 | 0.279 | 1.7e-20 | |
| UNIPROTKB|Q9NZL9 | 334 | MAT2B "Methionine adenosyltran | 0.653 | 0.586 | 0.306 | 1.2e-19 | |
| UNIPROTKB|E2RT47 | 334 | MAT2B "Uncharacterized protein | 0.776 | 0.697 | 0.288 | 2.5e-19 | |
| UNIPROTKB|H7C0X7 | 198 | MAT2B "Methionine adenosyltran | 0.59 | 0.893 | 0.313 | 4e-19 | |
| UNIPROTKB|Q29RI9 | 334 | MAT2B "Methionine adenosyltran | 0.653 | 0.586 | 0.297 | 8.3e-19 | |
| UNIPROTKB|E1BTX6 | 334 | MAT2B "Uncharacterized protein | 0.59 | 0.529 | 0.307 | 3.8e-18 | |
| ZFIN|ZDB-GENE-030131-786 | 334 | mat2b "methionine adenosyltran | 0.643 | 0.577 | 0.298 | 3.8e-18 | |
| RGD|1593534 | 334 | Mat2b "methionine adenosyltran | 0.59 | 0.529 | 0.302 | 1.5e-17 | |
| UNIPROTKB|Q5U2R0 | 334 | Mat2b "Methionine adenosyltran | 0.59 | 0.529 | 0.302 | 1.5e-17 |
| MGI|MGI:1913667 Mat2b "methionine adenosyltransferase II, beta" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
Identities = 55/182 (30%), Positives = 95/182 (52%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
QP V+V+CAA P V E+ PD+A +NV +S L+ LI++S+D V++G
Sbjct: 86 QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFLIYISSDYVFDGT 143
Query: 136 KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWI 195
Y EED +P+N+YGK+K+ EK + E A+LR ++YG + + +S
Sbjct: 144 NPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYGE--VEKLEESAVTVMF 201
Query: 196 DSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
D V + H + R P +V+DV + L + + D ++ + G +++++ +
Sbjct: 202 DKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTFHWSGNEQMTKYE 260
Query: 256 MA 257
MA
Sbjct: 261 MA 262
|
|
| UNIPROTKB|I3LU04 MAT2B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 71/254 (27%), Positives = 120/254 (47%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVL+ G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLITGATGLLGRAVYK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ + F QP V+V+CAA P V EN PD+A +NV +S N L
Sbjct: 75 SNAVHHIIYDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS-GNLAKEAVAAIGAFL 132
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++STD V++G Y+EED +P+N+YGK+K+ EK + E A+LR ++YG +
Sbjct: 133 IYISTDYVFDGKNPPYREEDMPSPLNLYGKTKLEGEKAVLENNLGAAVLRIPVLYGE--V 190
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 191 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTF 249
Query: 244 NVGGPDRVSRVQMA 257
+ G +++++ +MA
Sbjct: 250 HWSGNEQMTKYEMA 263
|
|
| UNIPROTKB|Q9NZL9 MAT2B "Methionine adenosyltransferase 2 subunit beta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 62/202 (30%), Positives = 103/202 (50%)
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
F V+L + + F QP V+V+CAA P V EN PD+A +NV +S L+
Sbjct: 67 FEQVNLLDSNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKE 123
Query: 116 TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSS 175
LI++S+D V++G Y+EED AP+N+YGK+K+ EK + E A+LR
Sbjct: 124 AAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIP 183
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
I+YG + + +S D V + H + R P +V+DV + L + +
Sbjct: 184 ILYGE--VEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML- 240
Query: 236 DKQMQLLLNVGGPDRVSRVQMA 257
D ++ + G +++++ +MA
Sbjct: 241 DPSIKGTFHWSGNEQMTKYEMA 262
|
|
| UNIPROTKB|E2RT47 MAT2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 75/260 (28%), Positives = 124/260 (47%)
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
F V+L + F QP V+V+CAA P V EN PD+A +NV +S L+
Sbjct: 67 FEQVNLLDSEAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKE 123
Query: 116 TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSS 175
LI++S+D V++G Y+EED +P+N+YGK+K+ EK + E A+LR
Sbjct: 124 AALIGAFLIYISSDYVFDGTNPPYREEDVPSPLNLYGKTKLEGEKAVLENNLGAAVLRIP 183
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
++YG + + +S D V + H + R P +V+DV + L + +
Sbjct: 184 VLYGE--VEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML- 240
Query: 236 DKQMQLLLNVGGPDRVSRVQMA--EVDR-----------------GVQSPADISMDITKL 276
D ++ + G +++++ +MA D G Q P + +D TKL
Sbjct: 241 DPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCTKL 300
Query: 277 VQTLNIDPVT-YKDGVKLTL 295
+TL I T ++ G+K +L
Sbjct: 301 -ETLGIGQRTPFRIGIKESL 319
|
|
| UNIPROTKB|H7C0X7 MAT2B "Methionine adenosyltransferase 2 subunit beta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 57/182 (31%), Positives = 96/182 (52%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
+P V+V+CAA P V EN PD+A +NV +S L+ LI++S+D V++G
Sbjct: 21 EPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFLIYISSDYVFDGT 78
Query: 136 KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWI 195
Y+EED AP+N+YGK+K+ EK + E A+LR I+YG + + +S
Sbjct: 79 NPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYGE--VEKLEESAVTVMF 136
Query: 196 DSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
D V + H + R P +V+DV + L + + D ++ + G +++++ +
Sbjct: 137 DKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTFHWSGNEQMTKYE 195
Query: 256 MA 257
MA
Sbjct: 196 MA 197
|
|
| UNIPROTKB|Q29RI9 MAT2B "Methionine adenosyltransferase 2 subunit beta" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 60/202 (29%), Positives = 102/202 (50%)
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
F V+L + + F QP V+V+CAA P V EN PD+A +NV +S L+
Sbjct: 67 FEQVNLLDSNAVHHIIYDF-QPHVIVHCAAERRPDVVENHPDAASQLNVDAS--GNLAKE 123
Query: 116 TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSS 175
LI++S+D V++G Y+EED P+N+YGK+K+ EK + E A+LR
Sbjct: 124 AAAIGAFLIYISSDYVFDGTNPPYREEDIPNPLNLYGKTKLEGEKAVLENNLGAAVLRIP 183
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
++YG + + +S D V + H + R P +V+DV + L + +
Sbjct: 184 VLYGE--VERLEESAVTIMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML- 240
Query: 236 DKQMQLLLNVGGPDRVSRVQMA 257
D ++ + G +++++ +MA
Sbjct: 241 DPSIKGTFHWSGNEQMTKYEMA 262
|
|
| UNIPROTKB|E1BTX6 MAT2B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 56/182 (30%), Positives = 93/182 (51%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
QP V+V+CAA P V E+ PD+A +NV +S L+ LI++STD V++G
Sbjct: 86 QPHVIVHCAAERRPDVVESQPDAASQLNVAAS--GNLAKEAAGIGAFLIYISTDYVFDGT 143
Query: 136 KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWI 195
YKE D P+N+YGK+K+ EK + E A+LR ++YG + + +S
Sbjct: 144 SPPYKETDVPNPLNLYGKTKLEGEKAVLENNEGAAVLRIPVLYGE--VERLEESAVTVMF 201
Query: 196 DSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
D V + H + R P V+DV + L + + D ++ + G +++++ +
Sbjct: 202 DKVQFSNKSANMDHWQQRFPTNVKDVAVVCRQLAEKRML-DPSIKGTFHWSGNEQMTKYE 260
Query: 256 MA 257
MA
Sbjct: 261 MA 262
|
|
| ZFIN|ZDB-GENE-030131-786 mat2b "methionine adenosyltransferase II, beta" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 60/201 (29%), Positives = 100/201 (49%)
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
F +L V +F QP V+V+CAA P V E ++AM++NV + L+
Sbjct: 67 FLKCNLLDEDAVRGVIQRF-QPHVIVHCAAERRPDVVERHTEAAMNLNVHACAT--LAK- 122
Query: 116 TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSS 175
E + LI++STD V++G Y E D P+N+YGKSK+ E+ I C AILR
Sbjct: 123 -EAGGSFLIYISTDYVFDGRNPPYGENDAPNPLNLYGKSKLEGEREILRHCPGAAILRVP 181
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
I++G + V +S + V E H + R P Y DV ++ + R L +
Sbjct: 182 ILFGE--VEKVEESAVTVLFERVQEGAESCTIDHCQQRFPTYTNDVARVCRNMAERAL-Q 238
Query: 236 DKQMQLLLNVGGPDRVSRVQM 256
D+ ++ + + +++++ +M
Sbjct: 239 DQSLRGIFHYSAKEQMTKYEM 259
|
|
| RGD|1593534 Mat2b "methionine adenosyltransferase II, beta" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 55/182 (30%), Positives = 95/182 (52%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
QP V+V+CAA P V E+ PD+A +NV +S L+ LI++S+D V++G
Sbjct: 86 QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFLIYISSDYVFDGT 143
Query: 136 KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWI 195
Y EED +P+N+YGK+K+ EK + E A+LR ++YG + + +S
Sbjct: 144 NPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYGE--VEKLEESAVTVMF 201
Query: 196 DSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
D V + H + R P +V+DV + L + + D ++ + G +++++ +
Sbjct: 202 DKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTFHWSGNEQMTKYE 260
Query: 256 MA 257
MA
Sbjct: 261 MA 262
|
|
| UNIPROTKB|Q5U2R0 Mat2b "Methionine adenosyltransferase 2 subunit beta" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 55/182 (30%), Positives = 95/182 (52%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
QP V+V+CAA P V E+ PD+A +NV +S L+ LI++S+D V++G
Sbjct: 86 QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFLIYISSDYVFDGT 143
Query: 136 KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWI 195
Y EED +P+N+YGK+K+ EK + E A+LR ++YG + + +S
Sbjct: 144 NPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYGE--VEKLEESAVTVMF 201
Query: 196 DSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
D V + H + R P +V+DV + L + + D ++ + G +++++ +
Sbjct: 202 DKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTFHWSGNEQMTKYE 260
Query: 256 MA 257
MA
Sbjct: 261 MA 262
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 300 | |||
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 3e-62 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 6e-40 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 4e-32 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 5e-30 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 1e-28 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 2e-25 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 2e-23 | |
| PRK09987 | 299 | PRK09987, PRK09987, dTDP-4-dehydrorhamnose reducta | 1e-14 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 5e-14 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 1e-13 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 2e-13 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 2e-10 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 3e-10 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 1e-09 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 2e-09 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 2e-09 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 4e-09 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 1e-08 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 2e-08 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 2e-08 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 3e-08 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 4e-08 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 1e-07 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 3e-07 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 5e-07 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 7e-07 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 6e-06 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 9e-06 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 9e-06 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 1e-05 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 1e-05 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 2e-05 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 2e-05 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 4e-05 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 1e-04 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 2e-04 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 3e-04 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 5e-04 | |
| PRK09072 | 263 | PRK09072, PRK09072, short chain dehydrogenase; Pro | 7e-04 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 8e-04 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 0.003 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 0.003 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 0.004 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 3e-62
Identities = 84/310 (27%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
++L+ G TG LG+ L++ L E + Y+V T S F +DL
Sbjct: 1 KILITGATGMLGRALVRLLKE---RGYEVIGTGRSRAS-------------LFKLDLTD- 43
Query: 65 SGFDAVALKFG--QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
DAV +PDV++NCAA + CE+DP+ A +NV + ++
Sbjct: 44 --PDAVEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGA--R 99
Query: 123 LIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQT 182
LIH+STD V++G K YKEED P+NVYGKSK+ E + + ILR+S +YG
Sbjct: 100 LIHISTDYVFDGKKGPYKEEDAPNPLNVYGKSKLLGEVAVLNANPRYLILRTSWLYGELK 159
Query: 183 ISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLL 242
++ + + ++V HD+ P Y D+ IL L R + +
Sbjct: 160 ---NGENFVEWMLRLAA-ERKEVNVVHDQIGSPTYAADLADAILELIERN-----SLTGI 210
Query: 243 LNVGGPDRVSRVQMA--------------------EVDRGVQSPADISMDITKLVQTLNI 282
++ +S+ + A E + PA+ S+D +KL + I
Sbjct: 211 YHLSNSGPISKYEFAKLIADALGLPDVEIKPITSSEYPLPARRPANSSLDCSKLEELGGI 270
Query: 283 DPVTYKDGVK 292
P +K+ ++
Sbjct: 271 KPPDWKEALR 280
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 6e-40
Identities = 73/317 (23%), Positives = 130/317 (41%), Gaps = 65/317 (20%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
++L+ G G LG L + L ++V AT + ++D+
Sbjct: 2 KILITGANGQLGTELRRAL----PGEFEVIATDRA------------------ELDI--- 36
Query: 65 SGFDAVALKFGQ--PDVVVNCAALSVPRVCENDPDSAMSINV--PSSLVNWLSSFTENKE 120
+ DAV + PDVV+N AA + E++P+ A ++N +L +
Sbjct: 37 TDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV----G 92
Query: 121 NLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
L+H+STD V++G K YKE D P+NVYG+SK+A E+ + ILR+S +YG
Sbjct: 93 ARLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEAVRAAGPRHLILRTSWVYG 152
Query: 180 PQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQM 239
+ V + + + +G++++ D+ P Y D+ IL L +
Sbjct: 153 EYGNNFV------KTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEKE----- 201
Query: 240 QLLLNVGGPDRVSR--------------------VQMAEVDRGVQSPADISMDITKLVQT 279
+ ++ S + AE + PA+ S+D KL +
Sbjct: 202 GGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKA 261
Query: 280 LNIDPVTYKDGVKLTLA 296
+ +++ +K L
Sbjct: 262 FGLSLPEWREALKALLD 278
|
Length = 281 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-32
Identities = 76/316 (24%), Positives = 135/316 (42%), Gaps = 58/316 (18%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
+LV G G LG+ L + L+E + +V A ++DL +
Sbjct: 1 ILVTGANGQLGRELTRLLAE---RGVEVVALDRP------------------ELDL---T 36
Query: 66 GFDAVALKF--GQPDVVVNCAALSVPRVCENDPDSAMSINV--PSSLVNWLSSFTENKEN 121
+AVA +PDVVVN AA + E++P+ A ++N P +L ++ +
Sbjct: 37 DPEAVAALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALGPGNLAEACAA----RGA 92
Query: 122 LLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
LIH+STD V++G K Y+E+D P+NVYG++K+A E+ + ILR++ +YG
Sbjct: 93 PLIHISTDYVFDGAKGGPYREDDPTGPLNVYGRTKLAGEQAVLAANPRHLILRTAWVYGE 152
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDK--- 237
+ + + ++ +++ D+ P RD+ +LAL + L
Sbjct: 153 Y-----GNNFVK-TMLRLAAERDELRVVDDQLGSPTSARDLADALLALIRKRLRGPALAG 206
Query: 238 --------------QMQLLLNVGG--PDRVSRVQMAEVDRGVQSPADISMDITKLVQTLN 281
+ + + G RV + AE + PA+ +D +KL T
Sbjct: 207 TYHLAGSGETSWYDFARAIFDEAGADGGRVRPIPTAEYPTPARRPANSVLDTSKLEATFG 266
Query: 282 IDPVTYKDGVKLTLAA 297
I +++ + L
Sbjct: 267 IPLPDWREALAEVLDE 282
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-30
Identities = 79/310 (25%), Positives = 132/310 (42%), Gaps = 51/310 (16%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
R+L+ G G LG+ L+Q LS V A S +DL
Sbjct: 1 RILITGANGQLGRELVQQLSPEG---RVVVALTRS------------------QLDLTDP 39
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ + L+ +PD VVN AA + E+DP+ A ++N + L+ L+
Sbjct: 40 EALERL-LRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQN--LARAAARHGARLV 96
Query: 125 HLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
H+STD V++G Y+E+D P+NVYG+SK+A E+ + N I+R+S +YG
Sbjct: 97 HISTDYVFDGEGKRPYREDDATNPLNVYGQSKLAGEQAVRAAGPNALIVRTSWLYGGGGG 156
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW--------LSE 235
++ + + +GE++ D+ P Y +D+ ++I AL R L+
Sbjct: 157 RNF-----VRTMLRLAGRGEELRVVDDQIGSPTYAKDLARVIAALLQRLARARGVYHLAN 211
Query: 236 DKQ----------MQLLLNVGGPDRVSRVQ---MAEVDRGVQSPADISMDITKLVQTLNI 282
Q + G V+ E R + PA +D TKLV+TL
Sbjct: 212 SGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGT 271
Query: 283 DPVTYKDGVK 292
+++ ++
Sbjct: 272 PLPHWREALR 281
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 1e-28
Identities = 75/318 (23%), Positives = 118/318 (37%), Gaps = 33/318 (10%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
R+LV GG G++G HL++ L +DV LD L F +DL
Sbjct: 1 MRILVTGGAGFIGSHLVERLLA---AGHDVRGLDRLRD----GLDPLLSGVEFVVLDLTD 53
Query: 64 GSGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
D +A PD V++ AA SVP +DP + +NV +L N L +
Sbjct: 54 RDLVDELAKGV--PDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTL-NLLEAARAAGVKR 110
Query: 123 LIHLST-DQVYEGVKSFYKEEDEIA--PVNVYGKSKVAAEKFIYEKCS----NFAILRSS 175
+ S+ VY +ED P+N YG SK+AAE+ + ILR
Sbjct: 111 FVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPF 170
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE--CRCPVYVRDVVKIILALTNRWL 233
+YGP + + +I +L + D R VYV DV +L
Sbjct: 171 NVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPD 230
Query: 234 SE------------DKQMQLLLNVGGPDRVSRVQMAEVDRGVQSPADISMDITKLVQTLN 281
+++ + + + + R +DI+K L
Sbjct: 231 GGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALG 290
Query: 282 IDP-VTYKDGVKLTLAAE 298
+P V+ ++G+ TL
Sbjct: 291 WEPKVSLEEGLADTLEWL 308
|
Length = 314 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-25
Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 17/230 (7%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
+LV GGTG++G HL++ + + Y+V L+ F DL
Sbjct: 1 ILVTGGTGFIGSHLVR---RLLQEGYEV--IVLGRRRRSESLNTGRIRFHE--GDLTDPD 53
Query: 66 GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIH 125
+ + L QPD V++ AA S DP + NV +L L + +
Sbjct: 54 ALERL-LAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTL-RLLEAARRAGVKRFVF 111
Query: 126 LSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEK----FIYEKCSNFAILRSSIIYGP 180
S+ +VY V E+ + P++ Y +K+AAE+ + ILR +YGP
Sbjct: 112 ASSSEVYGDVADPPITEDTPLGPLSPYAAAKLAAERLVEAYARAYGLRAVILRLFNVYGP 171
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHD-ECRCP-VYVRDVVKIILAL 228
P + I +L +G+ + D R +YV DV + IL
Sbjct: 172 GNPDPFVTHVIPALIRRIL-EGKPILLLGDGTQRRDFLYVDDVARAILLA 220
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 2e-23
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 52/233 (22%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
+LV GG G++G HL++ L E + ++V
Sbjct: 1 ILVTGGAGFIGSHLVRRLLE---RGHEVVVIDRL-------------------------- 31
Query: 66 GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIH 125
DVVV+ AAL ++PD NV +N L + + ++
Sbjct: 32 ------------DVVVHLAALVGVPASWDNPDEDFETNV-VGTLNLLEAARKAGVKRFVY 78
Query: 126 LSTDQVYEGVKSFYKEEDEI-APVNVYGKSKVAAEKFIYEKCS----NFAILRSSIIYGP 180
S+ VY + +EE+ P++ YG SK+AAE + ILR + +YGP
Sbjct: 79 ASSASVYGSPEGLPEEEETPPRPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANVYGP 138
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFF--HDECRCPVYVRDVVK-IILALTN 230
+ +G+ + F ++ R ++V DVV+ I+ AL N
Sbjct: 139 GQ--RPRLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILHALEN 189
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|182184 PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-14
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
+PDV+VN AA + E++P+ A +N S V ++ ++H STD V+ G
Sbjct: 54 RPDVIVNAAAHTAVDKAESEPEFAQLLNATS--VEAIAKAANEVGAWVVHYSTDYVFPGT 111
Query: 136 KSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
++E D AP+NVYG++K+A EK + E C+ I R+S +Y
Sbjct: 112 GDIPWQETDATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVY 155
|
Length = 299 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 5e-14
Identities = 90/325 (27%), Positives = 144/325 (44%), Gaps = 58/325 (17%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-----ATHHSTPLPQLLLDALPHSFVFFDV 59
RVLV GG G++G HL++ L E ++V +T LP+ + + F +
Sbjct: 1 RVLVTGGAGFIGSHLVERLLERG---HEVIVLDNLSTGKKENLPE-----VKPNVKFIEG 52
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
D++ + V F D V + AA SVPR E DP +NV +L N L + +
Sbjct: 53 DIRDD---ELVEFAFEGVDYVFHQAAQASVPRSIE-DPIKDHEVNVLGTL-NLLEAARKA 107
Query: 119 KENLLIHLSTDQVYEGVKSFYKEEDEI-APVNVYGKSKVAAEKFI--YEKCSNF--AILR 173
++ S+ VY K+ED P++ Y SK A E + + + LR
Sbjct: 108 GVKRFVYASSSSVYGDPPYLPKDEDHPPNPLSPYAVSKYAGELYCQVFARLYGLPTVSLR 167
Query: 174 SSIIYGPQTISPVPKS-----LPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVK-II 225
+YGP+ P +PI +I+ L KGE + D + R YV DVV+ +
Sbjct: 168 YFNVYGPRQD---PNGGYAAVIPI-FIERAL-KGEPPTIYGDGEQTRDFTYVEDVVEANL 222
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGVQS-----------PADIS---M 271
LA T E + N+G R S ++AE+ R + P D+
Sbjct: 223 LAATAGAGGE------VYNIGTGKRTSVNELAELIREILGKELEPVYAPPRPGDVRHSLA 276
Query: 272 DITKLVQTLNIDP-VTYKDGVKLTL 295
DI+K + L +P V++++G++LT+
Sbjct: 277 DISKAKKLLGWEPKVSFEEGLRLTV 301
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-13
Identities = 47/196 (23%), Positives = 72/196 (36%), Gaps = 46/196 (23%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
+VLV G G++G+ L+ L + A ++ V L
Sbjct: 1 KVLVTGANGFIGRALVDKL--LSRGEEVRIAVRNAENAEP-------------SVVLAEL 45
Query: 65 SGFDAVALKFGQPDVVVNCAALS-VPRVCENDPDSA-MSINVPSSLVNWLSSFTENKENL 122
D+ F D VV+ AA V DP S +N TE L
Sbjct: 46 PDIDSFTDLFLGVDAVVHLAARVHVMNDQGADPLSDYRKVN------------TELTRRL 93
Query: 123 -----------LIHLSTDQVY--EGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF 169
+ LS+ +V V + + E D AP + YG+SK+ AE+ + E ++
Sbjct: 94 ARAAARQGVKRFVFLSSVKVNGEGTVGAPFDETDPPAPQDAYGRSKLEAERALLELGASD 153
Query: 170 ----AILRSSIIYGPQ 181
ILR ++YGP
Sbjct: 154 GMEVVILRPPMVYGPG 169
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 82/321 (25%), Positives = 141/321 (43%), Gaps = 50/321 (15%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP--LPQLLLDALPHSFVFFDV-DL 61
RVL+VGG G++G HL+ L E EG P P LP +D + + + DL
Sbjct: 1 RVLIVGGNGFIGSHLVDALLE-EG-PQVRVFDRSIPPYELPLGGVDYIKGD--YENRADL 56
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
+S AL D V++ A+ + P +P + NV + V L +
Sbjct: 57 ES-------ALV--GIDTVIHLASTTNPATSNKNPILDIQTNVAPT-VQLLEACAAAGIG 106
Query: 122 LLIHLST-DQVYEGV--KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS----NFAILRS 174
+I S+ VY GV + E D P++ YG SK+A EK++ ++ +LR
Sbjct: 107 KIIFASSGGTVY-GVPEQLPISESDPTLPISSYGISKLAIEKYLRLYQYLYGLDYTVLRI 165
Query: 175 SIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNR 231
S YGP Q +PI ++ +L +GE +E + D R +Y+ D+V+ ++A
Sbjct: 166 SNPYGPGQRPDGKQGVIPI-ALNKIL-RGEPIEIWGDGESIRDYIYIDDLVEALMA---- 219
Query: 232 WLSEDKQMQLLLNVGGPDRVSRVQM-AEVDRGVQSPADIS-------------MDITKLV 277
L K ++ + N+G S ++ AE+++ + +DI++
Sbjct: 220 -LLRSKGLEEVFNIGSGIGYSLAELIAEIEKVTGRSVQVIYTPARTTDVPKIVLDISRAR 278
Query: 278 QTLNIDP-VTYKDGVKLTLAA 297
L P ++ +DG++ T
Sbjct: 279 AELGWSPKISLEDGLEKTWQW 299
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-10
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 27/182 (14%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLD---ALPHS-FVF 56
K +LV GG G +G L++ + + P + L +L+ + PH F
Sbjct: 1 KGKTILVTGGAGSIGSELVRQILK--FGPKKLIVFDRDENKLHELVRELRSRFPHDKLRF 58
Query: 57 FDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
D++ A K PD+V + AAL E++P+ A+ NV + N + +
Sbjct: 59 IIGDVRD-KERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTK-NVIDAAI 116
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFI-----YEKCSNFAI 171
EN + +STD K+ + PVNV G +K AEK + Y + F+
Sbjct: 117 ENGVEKFVCISTD------KA-------VNPVNVMGATKRVAEKLLLAKNEYSSSTKFST 163
Query: 172 LR 173
+R
Sbjct: 164 VR 165
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-10
Identities = 50/238 (21%), Positives = 87/238 (36%), Gaps = 47/238 (19%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ-LLLDALPHSFVFFDVDLK 62
++L++GGT ++G+ L++ L +AA H T + LP D
Sbjct: 1 MKILIIGGTRFIGKALVEEL---------LAAGHDVTVFNRGRTKPDLPEGVEHIVGDRN 51
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
+ L DVVV+ A + PR E D + +
Sbjct: 52 DRDALEE-LLGGEDFDVVVDTIAYT-PRQVERALD-----------------AFKGRVKQ 92
Query: 123 LIHLSTDQVYEGVKSFYKE-----EDEIAPVNV---YGKSKVAAEKFIYEKCS-NFAILR 173
I +S+ VY E E + ++ YG+ K AAE + E + + I+R
Sbjct: 93 YIFISSASVYLKPGRVITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEAAAFPYTIVR 152
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV---YVRDVVKIILAL 228
IYGP + L + D + +G + + V +V+D+ + +L
Sbjct: 153 PPYIYGPGDYTGR---LA-YFFDRLA-RGRPI-LVPGDGHSLVQFIHVKDLARALLGA 204
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 81/339 (23%), Positives = 131/339 (38%), Gaps = 82/339 (24%)
Query: 5 RVLVVGGTGYLG----QHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
R+LV GG G++G +++L + E D T+ L+ P + F D
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD-KLTYAGNLENLADLEDNP-RYRFVKGD 58
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALS-VPRVCENDPDSAMSINVPSSLV--NWLSSFT- 116
+ + + QPD VV+ AA S V R SI+ P++ + N + ++T
Sbjct: 59 IGDRELVSRLFTEH-QPDAVVHFAAESHVDR----------SISGPAAFIETNVVGTYTL 107
Query: 117 ------ENKENLLIHLSTDQVYEGVK--SFYKEEDEIAPVNVYGKSKVAAEKFI--YEKC 166
E H+STD+VY ++ + E +AP + Y SK A++ + Y +
Sbjct: 108 LEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAASDHLVRAYHRT 167
Query: 167 SNF--AILRSSIIYG---------PQTISPV--PKSLPI--------QW---------ID 196
I R S YG P I+ K LP+ W I
Sbjct: 168 YGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIY 227
Query: 197 SVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQM 256
VL KG E ++ +VV+ IL L L +D+ L DR
Sbjct: 228 LVLEKGRVGETYNIGGGNERTNLEVVETILEL----LGKDED----LITHVEDRPGH--- 276
Query: 257 AEVDRGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLT 294
DR ++D +K+ + L P T+++G++ T
Sbjct: 277 ---DR------RYAIDASKIKRELGWAPKYTFEEGLRKT 306
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 30/194 (15%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
V V GGTG+LG+HL++ L E + V S L + V + G
Sbjct: 1 VFVTGGTGFLGRHLVKRLLE---NGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGD 57
Query: 66 ------GFDAVALKF--GQPDVVVNCAALSVPRVCENDPDSAMSINVPS--SLVNWLSSF 115
G A A + G+ D V++CAA + + A N+ ++ +
Sbjct: 58 LTQPNLGLSAAASRELAGKVDHVIHCAASYDF---QAPNEDAWRTNIDGTEHVLELAARL 114
Query: 116 TENKENLLIHLSTDQV---YEGVKSFYKEED---EIAPVNVYGKSKVAAEKFIYEKCS-- 167
+ ++ST V EG +E + N Y +SK AE+ + +
Sbjct: 115 DIQR---FHYVSTAYVAGNREGN---IRETELNPGQNFKNPYEQSKAEAEQLVRAAATQI 168
Query: 168 NFAILRSSIIYGPQ 181
+ R SI+ G
Sbjct: 169 PLTVYRPSIVVGDS 182
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 51/259 (19%), Positives = 91/259 (35%), Gaps = 51/259 (19%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL---PQLLLDALPHSFVFFDVD 60
V V G TG++G++++ L++ G V + ++ D FV FD+
Sbjct: 1 MVVTVFGATGFIGRYVVNRLAKR-G--SQVIVPYRCEAYARRLLVMGDLGQVLFVEFDLR 57
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINV--PSSLVNWLSSFTEN 118
+++ DVV+N R+ E S ++V P L E
Sbjct: 58 DD-----ESIRKALEGSDVVINLVG----RLYETKNFSFEDVHVEGPERLAKAAK---EA 105
Query: 119 KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
LIH+S + + Y +SK E+ + E I+R S+++
Sbjct: 106 GVERLIHISALGA------------DANSPSKYLRSKAEGEEAVREAFPEATIVRPSVVF 153
Query: 179 GPQ-----TISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWL 233
G + + + LP + + K + PVYV DV + I L
Sbjct: 154 GREDRFLNRFAKLLAFLP--FPPLIGGGQTKFQ--------PVYVGDVAEAIARA----L 199
Query: 234 SEDKQMQLLLNVGGPDRVS 252
+ + + GP +
Sbjct: 200 KDPETEGKTYELVGPKVYT 218
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-09
Identities = 43/192 (22%), Positives = 70/192 (36%), Gaps = 33/192 (17%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
LVVGG+G+LG+HL++ L V + L F DL
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSSSG----RVQFHTGDLTDP 56
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAM------SINVPSSLVNWLSSFTEN 118
+ + G P+VV + A+ PD +NV + N + + +
Sbjct: 57 QDLEKAFNEKG-PNVVFHTAS----------PDHGSNDDLYYKVNVQGT-RNVIEACRKC 104
Query: 119 KENLLIHLSTDQVYEGVKSFYKEEDEIAPV-----NVYGKSKVAAEKFIYE---KCSNF- 169
L++ S+ V + DE P + Y ++K AEK + + S
Sbjct: 105 GVKKLVYTSSASVVFNGQDI-INGDESLPYPDKHQDAYNETKALAEKLVLKANDPESGLL 163
Query: 170 -AILRSSIIYGP 180
LR + I+GP
Sbjct: 164 TCALRPAGIFGP 175
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 60/251 (23%), Positives = 89/251 (35%), Gaps = 38/251 (15%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL-------LLDALPH-SFVF 56
VLV G G++G HL + L + H L LLD H F F
Sbjct: 1 NVLVTGADGFIGSHLTERL---------LREGHEVRALDIYNSFNSWGLLDNAVHDRFHF 51
Query: 57 FDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
D++ S + + K DVV + AAL P S + NV +L N L +
Sbjct: 52 ISGDVRDASEVEYLVKKC---DVVFHLAALIAIPYSYTAPLSYVETNVFGTL-NVLEAAC 107
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEED-----EIAPVNVYGKSKVAAEKFIYEKCS---- 167
++H ST +VY + +ED P + Y SK A++ Y
Sbjct: 108 VLYRKRVVHTSTSEVYGTAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGL 167
Query: 168 NFAILRSSIIYGPQ----TISPVP-KSLPIQWIDSVLSKGEK---VEFFHDECRCPVYVR 219
I+R YGP+ + P I L G F D R + +
Sbjct: 168 PVTIIRPFNTYGPRQSARAVIPTIISQRAIGQRLINLGDGSPTRDFNFVKDTARGFIDIL 227
Query: 220 DVVKIILALTN 230
D ++ + + N
Sbjct: 228 DAIEAVGEIIN 238
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 65/279 (23%), Positives = 104/279 (37%), Gaps = 72/279 (25%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP------------ 51
++LV GG G++G + ++ L + Y + + LD L
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLN-KYPDYKI-----------INLDKLTYAGNLENLEDVS 48
Query: 52 --HSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALS-VPRVCENDPDSAMSINVPSSL 108
+ F D+ D + + + D V++ AA S V R +DP+ + NV +
Sbjct: 49 SSPRYRFVKGDICDAELVDRL-FEEEKIDAVIHFAAESHVDR-SISDPEPFIRTNVLGT- 105
Query: 109 VNWLSSFTENKENLLIHLSTDQVYEGVKS--FYKEEDEIAPVNVYGKSKVAAEKFI--YE 164
L + + +H+STD+VY + + E +AP + Y SK AA+ + Y
Sbjct: 106 YTLLEAARKYGVKRFVHISTDEVYGDLLDDGEFTETSPLAPTSPYSASKAAADLLVRAYH 165
Query: 165 KCSNF--AILRSSIIYG---------PQTISPV--PKSLPIQ--------W--------- 194
+ I R S YG P I K LPI W
Sbjct: 166 RTYGLPVVITRCSNNYGPYQFPEKLIPLFILNALDGKPLPIYGDGLNVRDWLYVEDHARA 225
Query: 195 IDSVLSKGEKVEFF----HDECRCPVYVRDVVKIILALT 229
I+ VL KG E + +E ++VK+IL L
Sbjct: 226 IELVLEKGRVGEIYNIGGGNELT----NLELVKLILELL 260
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-STPLPQLLLDALPHSFVFFDVDLK 62
+VLV GG GY+G H ++ L + ++V + S LL F++ DL
Sbjct: 1 MKVLVTGGAGYIGSHTVRQLLK---TGHEVVVLDNLSNGHKIALLKLQF---KFYEGDLL 54
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCE--NDPDSAMSINVPSSLVNWLSSFTENKE 120
+ AV + + D VV+ AA V E +P NV +L N + + +
Sbjct: 55 DRALLTAV-FEENKIDAVVHFAASIS--VGESVQNPLKYYDNNVVGTL-NLIEAMLQTGV 110
Query: 121 NLLIHLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCS--NFAILR 173
I ST VY E S E +AP+N YG+SK+ +E+ + K + ILR
Sbjct: 111 KKFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILRDAAKANPFKVVILR 168
|
Length = 329 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 43/192 (22%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKP--YDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
++LV GG GY+G H ++ L E + D + LP+ F + DL+
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRG---ERITPVTFVEGDLR 57
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
D + + + D V++ A L I V S+ L + N
Sbjct: 58 DRELLDRLFEEH-KIDAVIHFAGL---------------IAVGESVQKPLKYYRNNVVGT 101
Query: 123 LIHLSTDQVYEGVKSF----------------YKEEDEIAPVNVYGKSKVAAEKFI--YE 164
L L Q GVK F E+ + P+N YG+SK+ +E+ + +
Sbjct: 102 LNLLEAMQQA-GVKKFIFSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSEQILRDLQ 160
Query: 165 KCS---NFAILR 173
K ++ ILR
Sbjct: 161 KADPDWSYVILR 172
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-08
Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 58/335 (17%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP----------YDVAATHHSTPLPQLLLDALPHS 53
++LV G G++G H+ + L E G YDV +L L
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLE-RGDEVVGIDNLNDYYDVRLKEA-----RLELLGKSGG 54
Query: 54 FVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLS 113
F F DL+ + K + D V++ AA + R +P + + N+ L N L
Sbjct: 55 FKFVKGDLEDREALRRL-FKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFL-NLLE 112
Query: 114 SFTENKENLLIHLSTDQVYEG-VKSFYKEEDEIA-PVNVYGKSKVAAEKFIYEKCSNFAI 171
L++ S+ VY K + E+D + P+++Y +K A E + + I
Sbjct: 113 LCRHFGVKHLVYASSSSVYGLNTKMPFSEDDRVDHPISLYAATKKANELMAHTYSHLYGI 172
Query: 172 ----LRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKII 225
LR +YGP P + ++L +G+ ++ F+D R Y+ D+V+ +
Sbjct: 173 PTTGLRFFTVYGPWG---RPDMALFLFTKAIL-EGKPIDVFNDGNMSRDFTYIDDIVEGV 228
Query: 226 LAL-------TNRWLSEDKQMQL------LLNVGG--PDRVSR-VQMAEVDRGVQS---- 265
+ W +E + N+G P ++ ++ E G ++
Sbjct: 229 VRALDTPAKPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKALGKKAKKNY 288
Query: 266 ----PADI---SMDITKLVQTLNIDP-VTYKDGVK 292
D+ DI+KL + L P + ++GVK
Sbjct: 289 LPMQKGDVPETYADISKLQRLLGYKPKTSLEEGVK 323
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-STPLPQLLLDALPHSFVFFDVDLKS 63
+VLV GG GY+G H + L E G YDV + S + L F++ D++
Sbjct: 1 KVLVTGGAGYIGSHTVVELLE-AG--YDVVVLDNLSNGHREALPRIEKIRIEFYEGDIRD 57
Query: 64 GSGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
+ D V + D V++ AAL +V + P NV +L N L + +
Sbjct: 58 RAALDKV-FAEHKIDAVIHFAALKAVGESVQK-PLKYYDNNVVGTL-NLLEAMRAHGVKN 114
Query: 123 LIHLSTDQVYEGVKSF--YKEEDEIAPVNVYGKSKVAAEKFI--YEKCS--NFAILR 173
+ S+ VY G EE + P N YG++K+ E+ + K N+ ILR
Sbjct: 115 FVFSSSAAVY-GEPETVPITEEAPLNPTNPYGRTKLMVEQILRDLAKAPGLNYVILR 170
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 59/234 (25%), Positives = 87/234 (37%), Gaps = 34/234 (14%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV-DLKSG 64
+LV G TG+LG +L++ L + Y V A S +LLD LP V D+ D S
Sbjct: 1 ILVTGATGFLGSNLVRALLA---QGYRVRALVRSG-SDAVLLDGLPVEVVEGDLTDAAS- 55
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+A D V + AA + D NV N L + E ++
Sbjct: 56 -----LAAAMKGCDRVFHLAA--FTSLWAKDRKELYRTNV-EGTRNVLDAALEAGVRRVV 107
Query: 125 HLSTDQVYEGVKSFYKEED----EIAPVNVYGKSKVAAEKFIYEKCSNFA-------ILR 173
H S+ G +E E N Y +SK+ AE + E A I+
Sbjct: 108 HTSSIAALGGPPDGRIDETTPWNERPFPNDYYRSKLLAELEVLE----AAAEGLDVVIVN 163
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILA 227
S ++GP P +D + K+ + V VRDV + +A
Sbjct: 164 PSAVFGPGDEGPTS-----TGLDVLDYLNGKLPAYPPGGTSFVDVRDVAEGHIA 212
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 15/183 (8%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGK--PYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
R+LV GG G++G HL+ L E + D ++ + + +F F DL
Sbjct: 1 RILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFENK---AFRFVKRDLL 57
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
+ D VA K G D V + AA R+ DPD + NV ++ N L + N
Sbjct: 58 DTA--DKVAKKDG--DTVFHLAANPDVRLGATDPDIDLEENVLAT-YNVLEAMRANGVKR 112
Query: 123 LIHLSTDQVYEGVKSFYKEEDE-IAPVNVYGKSKVAAEKFIYEKCSNFA----ILRSSII 177
++ S+ VY K ED P++VYG SK+AAE I F I R + I
Sbjct: 113 IVFASSSTVYGEAKVIPTPEDYPPLPISVYGASKLAAEALISAYAHLFGFQAWIFRFANI 172
Query: 178 YGP 180
GP
Sbjct: 173 VGP 175
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 7e-07
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 11/161 (6%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDV--AATHHSTPLPQ--LLLDALPHSFVFFDVD 60
R L+ G TG G +L + L E K Y+V S+ L D
Sbjct: 1 RALITGITGQDGSYLAEFLLE---KGYEVHGIVRRSSSFNTDRIDHLYINKDRITLHYGD 57
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
L S A++ +PD + + AA S +V +DP+ +N +L N L +
Sbjct: 58 LTDSSSLRR-AIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTL-NLLEAIRILGL 115
Query: 121 NLLIHL-STDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAE 159
+ + S+ + Y V+ E P + Y SK+ A+
Sbjct: 116 DARFYQASSSEEYGKVQELPQSETTPFRPRSPYAVSKLYAD 156
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 75/333 (22%), Positives = 136/333 (40%), Gaps = 71/333 (21%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDV-AATHHSTPLPQ---LLLDALPHSFVFFDV 59
KR+L+ GG G+LG HL L E +G ++V + T + L+ F+ DV
Sbjct: 1 KRILITGGAGFLGSHLCDRLLE-DG--HEVICVDNFFTGRKRNIEHLIGHPNFEFIRHDV 57
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
+ + D + + A + P + +P + NV +L N L
Sbjct: 58 ----------TEPLYLEVDQIYHLACPASPVHYQYNPIKTLKTNVLGTL-NMLGLAKRVG 106
Query: 120 ENLLIHLSTDQVYEG-------VKSFYKEEDEIAPVNVYGKSKVAAEK--FIYEKCSNFA 170
+L ST +VY G +S++ + I P + Y + K AE Y +
Sbjct: 107 ARVL-LASTSEVY-GDPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVD 164
Query: 171 ILRSSII--YGPQTISPVPKSLPIQWIDS-VLS-------KGEKVEFFHD--ECRCPVYV 218
+ + I YGP+ + D V+S +GE + + D + R YV
Sbjct: 165 VRIARIFNTYGPR----------MHPNDGRVVSNFIVQALRGEPITVYGDGTQTRSFQYV 214
Query: 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRG-VQSPADISM------ 271
D+V+ ++ L N S+ +N+G P+ + +++AE+ + S ++I
Sbjct: 215 SDLVEGLIRLMN---SDYFGG--PVNLGNPEEFTILELAELVKKLTGSKSEIVFLPLPED 269
Query: 272 -------DITKLVQTLNIDP-VTYKDGVKLTLA 296
DI+K + L +P V ++G++ T+
Sbjct: 270 DPKRRRPDISKAKELLGWEPKVPLEEGLRRTIE 302
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 42/175 (24%)
Query: 4 KRVLVVGGTGYLG-----QHLLQGLSEI------EGKPYDVAATHHSTPLPQLLLDALPH 52
K VLV GG G +G Q L EI E K Y + L + P
Sbjct: 251 KTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLID---------MELREKFPE 301
Query: 53 -SFVFFDVDLKSGSGFDAV--ALKFGQPDVVVNCAALS-VPRVCENDPDSAMSINVPSSL 108
F+ D++ D V A++ + D+V + AAL VP + E +P+ A+ NV +
Sbjct: 302 LKLRFYIGDVRD---RDRVERAMEGHKVDIVFHAAALKHVP-LVEYNPEEAIKTNVLGTE 357
Query: 109 VNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY 163
N + +N + +STD+ + P NV G +K AEK
Sbjct: 358 -NVAEAAIKNGVKKFVLISTDKA-------------VNPTNVMGATKRLAEKLFQ 398
|
Length = 588 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-06
Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 32/180 (17%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
+L++G TG++G+ L + L E H T LL D + +
Sbjct: 1 ILILGATGFIGRALARELLE---------QGHEVT-----LLVRNTKRLSKEDQEPVAVV 46
Query: 66 GFDAVALK-----FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSL-VNWLSSFTENK 119
D L DVV++ A + D + NV + + F
Sbjct: 47 EGDLRDLDSLSDAVQGVDVVIHLAGAPRDTRDFCEVDVEGTRNVLEAAKEAGVKHF---- 102
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
I +S+ Y + EE E +P + Y K E + E + I+R +IYG
Sbjct: 103 ----IFISSLGAYGDL----HEETEPSPSSPYLAVKAKTEAVLREASLPYTIVRPGVIYG 154
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP------QLLLDALPHSF 54
+S K LV G + +G+ + + L+ EG V + + +A
Sbjct: 3 LSGKVALVTGASSGIGRAIARALAR-EG--ARVVVAARRSEEEAAEALAAAIKEAGGGRA 59
Query: 55 VFFDVDLKSGSG-----FDAVALKFGQPDVVVNCAALSVPR-----VCENDPDSAMSINV 104
D+ A +FG+ D++VN A ++ P + E D D + +N+
Sbjct: 60 AAVAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNL 119
|
Length = 251 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 69/282 (24%), Positives = 106/282 (37%), Gaps = 78/282 (27%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL-----------LLDALPH 52
++LV GG G++G + + I K D H L +L + D+ +
Sbjct: 1 MKILVTGGAGFIGSNFV---RYILNKHPD----DHVVNLDKLTYAGNLENLADVEDSPRY 53
Query: 53 SFVFFDV-DLKSGSGFDAVALKFGQPDVVVNCAALS-VPRVCENDPDSAMSINVPSSLV- 109
FV D+ D + D + ++ QPD VV+ AA S V R SI+ P+ +
Sbjct: 54 RFVQGDICDREL---VDRLFKEY-QPDAVVHFAAESHVDR----------SIDGPAPFIQ 99
Query: 110 -NWLSSFT-------ENKENLLIHLSTDQVY---EGVKSFYKEEDEIAPVNVYGKSKVAA 158
N + ++T + H+STD+VY + E P + Y SK A+
Sbjct: 100 TNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAAS 159
Query: 159 EKFI--YEKCSNF--AILRSSIIYG---------PQTISPV--PKSLPI--------QW- 194
+ + Y + I R S YG P I K LP+ W
Sbjct: 160 DLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWL 219
Query: 195 --------IDSVLSKGEKVEFFHDECRCPVYVRDVVKIILAL 228
ID VL+KG+ E ++ +VVK I L
Sbjct: 220 YVEDHCRAIDLVLTKGKIGETYNIGGGNERTNLEVVKTICEL 261
|
Length = 340 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 50/208 (24%), Positives = 79/208 (37%), Gaps = 41/208 (19%)
Query: 8 VVGGTGYLGQHLLQGL--SEIEGKPYD-VAATHHSTPLPQLLLDALPHSFVFFDV----- 59
+ G TG+LG+ LL+ L S E K Y V A + L + L L +F +
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESAL-ERLRQELLKYGLFDRLKALER 59
Query: 60 ------DL-KSGSGFDAVALKF--GQPDVVVNCAALSVPRVCENDP-DSAMSINVPSS-- 107
DL + G + + DV+++ AA V +P + NV +
Sbjct: 60 IIPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAAT----VNFVEPYSDLRATNVLGTRE 115
Query: 108 LVNWLSSFTENKENLLIHLST----DQVYEGVKSFYKEEDEIAPV------NVYGKSKVA 157
++ K+ H+ST + ++ + DE P N Y +SK
Sbjct: 116 VLRLAKQM---KKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNGYTQSKWL 172
Query: 158 AEKFIYEKCSNF--AILRSSIIYG-PQT 182
AE+ + E I R SII G +T
Sbjct: 173 AEQLVREAAGGLPVVIYRPSIITGESRT 200
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 2e-05
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 13/171 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQG-LSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+++L+ GG G++G L++ ++E V ++ L L A F F VD+
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDIC 61
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLV------NWLSSFT 116
+ V + QPD V++ AA S + P + + N+ + + ++ T
Sbjct: 62 DRAELARVFTEH-QPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 117 ENKENLLI--HLSTDQVY---EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI 162
E+K++ H+STD+VY F+ E AP + Y SK +++ +
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLV 171
|
Length = 355 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 30/230 (13%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEG---KPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL 61
VLV GG+G+ G+ L++ L E G + +D+A P + L + F D+
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIA------PPGEALSAWQHPNIEFLKGDI 54
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
+ V D V + AA+ D +NV + N L +
Sbjct: 55 TD---RNDVEQALSGADCVFHTAAIVPL---AGPRDLYWEVNVGGTQ-NVLDACQRCGVQ 107
Query: 122 LLIHLSTDQVYEGVKSFYKEEDEIA----PVNVYGKSKVAAEKFIYEKCSN----FAILR 173
++ S+ V G ++ + ++ + ++Y ++K AE + E LR
Sbjct: 108 KFVYTSSSSVIFGGQNIHNGDETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCALR 167
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR-CPVYVRDVV 222
+ I+GP VP + K F YV ++
Sbjct: 168 PAGIFGPGDQGLVPILF-----EWAEKGLVKFVFGRGNNLVDFTYVHNLA 212
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 46/172 (26%), Positives = 64/172 (37%), Gaps = 46/172 (26%)
Query: 6 VLVVGGTGYLG-----QHLLQGLSEI------EGKPYDVAATHHSTPLPQLLLDALPHSF 54
VLV GG G +G Q L +I E K Y++ Q L
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIR---------QELRQEYNDPK 51
Query: 55 VFFDVDLKSGSGFDA----VALKFGQPDVVVNCAALS-VPRVCENDPDSAMSINVPSSLV 109
+ F + G D A++ D V + AAL VP + E +P A+ NV +
Sbjct: 52 LRFFI----GDVRDRERLERAMEQHGVDTVFHAAALKHVP-LVEYNPMEAIKTNVLGTE- 105
Query: 110 NWLSSFTENKENLLIHLSTDQ-VYEGVKSFYKEEDEIAPVNVYGKSKVAAEK 160
N + EN + +STD+ V P NV G +K AEK
Sbjct: 106 NVAEAAIENGVEKFVLISTDKAVN--------------PTNVMGATKRLAEK 143
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLL-LDALPHSFVFFDV-D 60
KRVLV G TG+ G L L E+ K + + P L +L LD S D+ D
Sbjct: 5 KRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNKISS-TRGDIRD 63
Query: 61 LKSGSGFDAV--ALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
L +A+ A++ +P++V + AA + R+ DP NV + VN L + E
Sbjct: 64 L------NALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGT-VNLLEAIRET 116
Query: 119 KE-NLLIHLSTDQVYEGVKSF--YKEEDEIAPVNVYGKSKVAAE 159
++++++D+ YE + Y+E D + + Y SK AE
Sbjct: 117 GSVKAVVNVTSDKCYENKEWGWGYRENDPLGGHDPYSSSKGCAE 160
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 33/183 (18%)
Query: 5 RVLVVGGTGYLGQHLLQGL--SEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
VL+ G TG+LG +LL+ L + K Y + + L+D L + +L+
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 63 SGSGFDAVALKFGQP----------------DVVVNCAALSVPRVCENDPDSAM-SINVP 105
S V +P DV+++ A V P + NV
Sbjct: 61 L-SRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGA----NVNWVYPYEELKPANV- 114
Query: 106 SSLVNWLSSFTENKENLLIHLSTDQVYEGVKSF----YKEEDEIAP----VNVYGKSKVA 157
L K L +ST V+ + + +D + N Y +SK
Sbjct: 115 LGTKELLKLAATGKLKPLHFVSTLSVFSAEEYNALDDEESDDMLESQNGLPNGYIQSKWV 174
Query: 158 AEK 160
AEK
Sbjct: 175 AEK 177
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 58/268 (21%), Positives = 102/268 (38%), Gaps = 65/268 (24%)
Query: 7 LVVGGTGYLGQHLLQGLSEIEGKP----YDVAATHHSTPLPQLLLDALPHSFV-FFDVDL 61
LV GG G+LG+H+++ L +D+ P+LL D + + + D+
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFDLR------FSPELLEDFSKLQVITYIEGDV 54
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
AL+ DVV++ AA+ + + D+ M +NV + N L + +
Sbjct: 55 TDKQDLRR-ALQ--GSDVVIHTAAI-IDVFGKAYRDTIMKVNVKGTQ-NVLDACVKAGVR 109
Query: 122 LLIHLSTDQVYEGVKSFYKE------ED---EIAPVNVYGKSKVAAEKFIYE-------- 164
+L++ S+ +V + Y + E E + Y +SK AEK + +
Sbjct: 110 VLVYTSSMEVVGP--NSYGQPIVNGDETTPYESTHQDPYPESKALAEKLVLKANGSTLKN 167
Query: 165 -----KCSNFAILRSSIIYGP--QTISPVPKSLPIQWIDSVLSKGEKVEF-----FHDEC 212
C+ LR + I+G + P + + + K D
Sbjct: 168 GGRLYTCA----LRPAGIFGEGDPFLFP-------FLVRLLKNGLAKFRTGDKNVLSD-- 214
Query: 213 RCPVYVRDVV-KIILALTNRWLSEDKQM 239
VYV +V ILA R L + K+
Sbjct: 215 --RVYVGNVAWAHILAA--RALQDPKKA 238
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHS--FVFFDV 59
KRVL+ G +G +GQ L + L+ + + ++ L + L LP+ +
Sbjct: 4 KDKRVLLTGASGGIGQALAEALAAAGARL--LLVGRNAEKL-EALAARLPYPGRHRWVVA 60
Query: 60 DLKSGSGFDAV---ALKFGQPDVVVNCAA 85
DL S +G +AV A + G +V++N A
Sbjct: 61 DLTSEAGREAVLARAREMGGINVLINNAG 89
|
Length = 263 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 56/333 (16%), Positives = 107/333 (32%), Gaps = 94/333 (28%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDV---------------AATHHSTPLPQLLLD 48
RVL+ GG G++G +L + ++V A + +
Sbjct: 1 MRVLITGGAGFIGSNLA---RFFLKQGWEVIGFDNLMRRGSFGNLAWLKANREDGGV--- 54
Query: 49 ALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSL 108
FV D+ + + + F D++++ AA P S + P
Sbjct: 55 ----RFVHGDIRNR-----NDLEDLFEDIDLIIHTAA---------QPSVTTSASSPRLD 96
Query: 109 --VNWLSSFT-------ENKENLLIHLSTDQVY--EGVKSFYKEED---EIAPVNV---- 150
N L + I ST++VY +E + E+AP
Sbjct: 97 FETNALGTLNVLEAARQHAPNAPFIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAG 156
Query: 151 -------------YGKSKVAAEKFIYEKCS----NFAILRSSIIYGPQTISPVPKSLPIQ 193
YG SK AA++++ E + R + GP+ +
Sbjct: 157 ISESFPLDFSHSLYGASKGAADQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAY 216
Query: 194 WIDSVL---------SKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLN 244
++ + G++V R ++ D+V + L + D++ + N
Sbjct: 217 FLKCAVTGKPLTIFGYGGKQV-------RDVLHSADLVNLYLRQFQ---NPDRRKGEVFN 266
Query: 245 VGGPDRVSRVQMAEVDRGVQSPADISMDITKLV 277
+GG R + V + E+ + M+ K
Sbjct: 267 IGG-GRENSVSLLELIALCEEITGRKMESYKDE 298
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 46/176 (26%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGL------------SEIEGKPYDVAATHHSTPLPQLLLDA 49
+ K +L+ GGTG G+ + L S E K +++ P P L
Sbjct: 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAPCL---- 55
Query: 50 LPHSFVFFDVDLKS--GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSS 107
F DV K V D VV+ AAL E +P + N+ +
Sbjct: 56 ---RFFIGDVRDKERLTRALRGV-------DYVVHAAALKQVPAAEYNPFECIRTNINGA 105
Query: 108 LVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEK-FI 162
N + + +N ++ LSTD+ P+N+YG +K+A++K F+
Sbjct: 106 Q-NVIDAAIDNGVKRVVALSTDKA-------------ANPINLYGATKLASDKLFV 147
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP---HSFVFF 57
++ KR LV G LG + L+E G VA + L AL
Sbjct: 5 LAGKRALVTGAARGLGAAFAEALAE-AG--ATVAFNDGLAAEARELAAALEAAGGRAHAI 61
Query: 58 DVDLKSGSG----FDAVALKFGQPDVVVNCAALSVPRVC----ENDPDSAMSINV 104
DL + FDA A G D +VN A ++ + + D+ M++NV
Sbjct: 62 AADLADPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNV 116
|
Length = 250 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 20/161 (12%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
R+L+ GG G +G L + L + GK +A+ P S F +D+
Sbjct: 1 RILITGGLGQIGSELAKLLRKRYGKDNVIASDIRKPPAHV------VLSGPFEYLDVLDF 54
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ + + ++ A LS V E +P A +N+ + L N L E+ + +
Sbjct: 55 KSLEEIVVNHKITWIIHLAALLSA--VGEKNPPLAWDVNM-NGLHNVLELAREHNLRIFV 111
Query: 125 HLSTDQVY------EGVKSFYKEEDEIAPVNVYGKSKVAAE 159
ST + + P +YG SKVAAE
Sbjct: 112 P-STIGAFGPTTPRNNTPDDTIQR----PRTIYGVSKVAAE 147
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.98 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.97 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.96 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.96 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.96 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.95 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.94 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.94 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.94 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.93 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.93 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.93 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.93 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.93 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.93 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.92 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.92 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.92 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.92 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.92 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.92 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.92 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.92 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.91 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.91 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.91 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.9 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.9 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.9 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.9 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.9 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.9 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.9 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.9 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.89 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.89 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.89 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.89 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.89 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.89 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.89 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.88 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.88 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.88 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.88 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.88 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.87 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.87 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.87 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.87 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.87 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.87 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.87 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.87 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.87 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.87 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.86 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.86 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.86 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.86 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.86 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.86 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.86 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.86 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.86 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.86 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.86 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.86 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.86 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.86 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.85 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.85 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.85 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.85 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.85 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.85 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.85 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.84 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.84 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.84 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.84 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.84 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.83 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.83 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.83 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.83 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.83 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.83 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.83 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.82 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.82 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.82 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.82 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.82 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.82 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.81 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.81 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.81 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.8 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.8 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.8 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.8 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.79 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.79 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.79 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.79 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.79 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.79 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.78 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.77 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.77 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.77 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.76 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.76 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.75 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.75 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.75 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.75 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.74 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.74 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.74 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.73 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.73 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.73 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.73 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.71 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.7 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.7 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.67 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.66 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.66 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.66 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.65 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.64 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.64 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.62 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.61 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.6 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.59 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.58 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.57 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.56 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.55 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.54 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.53 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.51 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.5 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.47 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.47 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.46 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.36 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.34 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.24 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.18 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.11 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 99.02 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.99 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.89 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.82 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.68 | |
| PLN00106 | 323 | malate dehydrogenase | 98.68 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.55 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.54 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.5 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.48 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.43 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.37 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 98.35 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.33 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.31 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.27 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.26 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.18 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.01 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.97 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.91 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.82 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 97.81 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.8 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.77 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.76 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.73 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.72 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.71 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.7 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.63 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.62 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 97.61 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.59 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.57 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.46 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.38 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.37 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.37 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.3 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.27 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.27 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 97.25 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 97.22 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.19 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 97.16 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.14 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.13 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.1 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.09 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.09 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.09 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.08 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.03 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.0 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.98 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.97 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.96 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.93 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.93 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.83 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.81 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.79 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 96.78 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.73 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.72 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.71 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.7 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.66 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.66 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 96.64 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.64 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.62 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.59 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.58 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.55 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.55 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 96.54 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 96.53 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.51 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.5 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.49 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.48 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 96.46 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.46 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.44 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.41 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.41 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.41 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.4 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.4 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 96.4 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.38 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.38 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.37 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.34 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.33 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.32 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.32 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 96.31 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.29 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 96.27 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.24 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 96.24 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.23 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.22 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.22 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 96.21 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 96.2 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 96.17 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 96.17 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.16 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 96.15 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.14 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.13 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.11 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.1 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.09 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.07 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.04 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.02 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 95.99 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 95.96 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.96 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.93 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 95.92 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.91 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 95.9 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.89 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.87 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.87 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 95.87 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 95.85 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.84 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 95.82 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 95.81 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 95.78 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.76 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 95.73 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 95.73 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.7 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.68 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.66 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 95.63 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 95.63 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.62 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.62 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.58 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.55 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.55 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.53 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.51 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 95.5 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.49 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.47 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.45 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.45 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.45 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.45 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 95.44 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 95.34 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 95.33 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 95.31 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 95.31 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.29 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 95.26 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 95.25 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 95.25 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.23 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.23 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 95.22 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.16 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 95.15 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 95.15 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 95.13 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.12 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 95.11 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.1 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 95.09 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 95.08 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 95.07 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 95.05 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.02 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.02 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 95.01 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 95.0 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 94.89 | |
| TIGR00514 | 449 | accC acetyl-CoA carboxylase, biotin carboxylase su | 94.89 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 94.88 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 94.86 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 94.84 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 94.84 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 94.83 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 94.83 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 94.81 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 94.79 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.77 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 94.73 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 94.73 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 94.71 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 94.69 |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=336.47 Aligned_cols=286 Identities=25% Similarity=0.290 Sum_probs=242.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
|+||||||+||||+|.+.+|++.| ++|++.+.-... ...+.. ....++++|+.|.+.+.+++++. +||+|||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G---~~vvV~DNL~~g~~~~v~~---~~~~f~~gDi~D~~~L~~vf~~~-~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG---HEVVVLDNLSNGHKIALLK---LQFKFYEGDLLDRALLTAVFEEN-KIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC---CeEEEEecCCCCCHHHhhh---ccCceEEeccccHHHHHHHHHhc-CCCEEEE
Confidence 689999999999999999999999 899988875332 222211 11578999999999999999987 9999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
+||......+..+|.++++.|+.||+ +|+++|++.++++|||.||.++||.... |++|+++..|.++||+||++.|++
T Consensus 74 FAa~~~VgESv~~Pl~Yy~NNv~gTl-~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~~~~p~NPYG~sKlm~E~i 152 (329)
T COG1087 74 FAASISVGESVQNPLKYYDNNVVGTL-NLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEI 152 (329)
T ss_pred CccccccchhhhCHHHHHhhchHhHH-HHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCCCCCCCCcchhHHHHHHHH
Confidence 99998888888999999999999998 9999999999999999999999999887 999999999999999999999999
Q ss_pred HHHHcC----CceeEeeeeeeCCCCCC------CCCCCchHHHHHHHHhcCCceeeccC--------cccCceeHHHHHH
Q 022280 162 IYEKCS----NFAILRSSIIYGPQTIS------PVPKSLPIQWIDSVLSKGEKVEFFHD--------ECRCPVYVRDVVK 223 (300)
Q Consensus 162 ~~~~~~----~~~ilR~~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~v~D~a~ 223 (300)
++.+.+ ++++||..++-|..... .....+++-.+..++.+...+.++|+ ..||||||.|+|+
T Consensus 153 L~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~ 232 (329)
T COG1087 153 LRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLAD 232 (329)
T ss_pred HHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHHHH
Confidence 987654 78999999999976321 11233445455556655566888874 3699999999999
Q ss_pred HHHHHHhccccccccccceeeecCCCccCHHHHHH--------------hhccCCCCCccccChHHHHHhcCCCc-C-CH
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE--------------VDRGVQSPADISMDITKLVQTLNIDP-V-TY 287 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~--------------~~~~~~~~~~~~~~~~k~~~~lg~~p-~-~~ 287 (300)
+.+++++.-..++. ..+||+++|...|..|+++ .+++..++..++.|++|++++|||+| + ++
T Consensus 233 aH~~Al~~L~~~g~--~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR~GDpa~l~Ad~~kA~~~Lgw~p~~~~L 310 (329)
T COG1087 233 AHVLALKYLKEGGS--NNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPAILVADSSKARQILGWQPTYDDL 310 (329)
T ss_pred HHHHHHHHHHhCCc--eeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCCCCCCceeEeCHHHHHHHhCCCcccCCH
Confidence 99999998766543 2599999999999999998 34556677888999999999999999 6 99
Q ss_pred HHHHHHHHhhhc
Q 022280 288 KDGVKLTLAAEA 299 (300)
Q Consensus 288 ~~~l~~~~~~~~ 299 (300)
++.++....|+.
T Consensus 311 ~~ii~~aw~W~~ 322 (329)
T COG1087 311 EDIIKDAWDWHQ 322 (329)
T ss_pred HHHHHHHHHHhh
Confidence 999999999975
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-49 Score=318.10 Aligned_cols=284 Identities=22% Similarity=0.308 Sum_probs=239.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC--CCchhhhhhcC-CCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS--TPLPQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~--~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++|||||.||||+++++.++++..+ ++|+.++.= ......+.... .++..|+++|+.|.+.+.++++++ ++|+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~-~~D~V 78 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEY-QPDAV 78 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCC-ceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhc-CCCeE
Confidence 68999999999999999999999866 667766652 11222232222 357889999999999999999987 89999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEeeccccccCCCC---CCCCCCCCCCCChhHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLSTDQVYEGVKS---FYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~---~~~E~~~~~p~~~Y~~sK~ 156 (300)
+|+|+-+..+.+...|...+++|+.||. +|++++++...+ ||+|+||..|||.-.. .++|.+|.+|.++|++||+
T Consensus 79 vhfAAESHVDRSI~~P~~Fi~TNv~GT~-~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKA 157 (340)
T COG1088 79 VHFAAESHVDRSIDGPAPFIQTNVVGTY-TLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKA 157 (340)
T ss_pred EEechhccccccccChhhhhhcchHHHH-HHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhh
Confidence 9999999988888999999999999997 999999997764 9999999999999654 6999999999999999999
Q ss_pred HHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHh
Q 022280 157 AAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 157 ~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~ 230 (300)
..+.+++++ +.+++|.|+++-|||-.. |-.+++.++..++ .+++++++|+ +.|||+||+|-|+++..+++
T Consensus 158 asD~lVray~~TYglp~~ItrcSNNYGPyqf---pEKlIP~~I~nal-~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 158 ASDLLVRAYVRTYGLPATITRCSNNYGPYQF---PEKLIPLMIINAL-LGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hHHHHHHHHHHHcCCceEEecCCCCcCCCcC---chhhhHHHHHHHH-cCCCCceecCCcceeeeEEeHhHHHHHHHHHh
Confidence 999988876 458899999999999865 5556666677777 7889999986 58999999999999999999
Q ss_pred ccccccccccceeeecCCCccCHHHHHH-----hh--------------ccCCCCCccccChHHHHHhcCCCc-CCHHHH
Q 022280 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VD--------------RGVQSPADISMDITKLVQTLNIDP-VTYKDG 290 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~--------------~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~ 290 (300)
++.. |+ +|||+++...+-.|+++ +. .++..-..+.+|.+|++++|||+| ++++++
T Consensus 234 kg~~-GE----~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe~G 308 (340)
T COG1088 234 KGKI-GE----TYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQETFETG 308 (340)
T ss_pred cCcC-Cc----eEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCCcCCCHHHH
Confidence 9765 45 99999999889888888 11 111112346799999999999999 999999
Q ss_pred HHHHHhhhc
Q 022280 291 VKLTLAAEA 299 (300)
Q Consensus 291 l~~~~~~~~ 299 (300)
|+.+++||.
T Consensus 309 lrkTv~WY~ 317 (340)
T COG1088 309 LRKTVDWYL 317 (340)
T ss_pred HHHHHHHHH
Confidence 999999985
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=336.87 Aligned_cols=289 Identities=22% Similarity=0.213 Sum_probs=226.4
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhcC----CCceeEEEeecCCchhHHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDAL----PHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~~----~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
|.+|+|||||||||||++|+++|+++| ++|++++|....... ..... ..++.++.+|++|.+.+..+++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN---QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 357899999999999999999999999 899999886432211 11111 1357789999999888887777
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChh
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVY 151 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y 151 (300)
++|+|||+|+......+..++...+++|+.|+. +++++|++.++++|||+||.++||.... +..|+++..|.++|
T Consensus 90 ---~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~-nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~p~~~Y 165 (348)
T PRK15181 90 ---NVDYVLHQAALGSVPRSLKDPIATNSANIDGFL-NMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGRPLSPY 165 (348)
T ss_pred ---CCCEEEECccccCchhhhhCHHHHHHHHHHHHH-HHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCCCCCCCCChh
Confidence 799999999976554455577888999999997 9999999999999999999999997554 67888888889999
Q ss_pred HHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCC-CCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHH
Q 022280 152 GKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISP-VPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKI 224 (300)
Q Consensus 152 ~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~ 224 (300)
+.||.++|.+++.+ +.+++++||+++|||+.... ....+++.++..++ .++++.++|+ +.++|+|++|+|++
T Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~-~~~~i~~~g~g~~~rd~i~v~D~a~a 244 (348)
T PRK15181 166 AVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLL-KDEPIYINGDGSTSRDFCYIENVIQA 244 (348)
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHH-cCCCcEEeCCCCceEeeEEHHHHHHH
Confidence 99999999988765 45789999999999986422 22234556666655 5666777654 68999999999999
Q ss_pred HHHHHhccccccccccceeeecCCCccCHHHHHHhh---c--------c---------CCCCCccccChHHHHHhcCCCc
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD---R--------G---------VQSPADISMDITKLVQTLNIDP 284 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~---~--------~---------~~~~~~~~~~~~k~~~~lg~~p 284 (300)
+++++...... ..+++||+++++.+|++|+++.. . . ........+|++|++++|||+|
T Consensus 245 ~~~~~~~~~~~--~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~P 322 (348)
T PRK15181 245 NLLSATTNDLA--SKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTFLSYEP 322 (348)
T ss_pred HHHHHhccccc--CCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHHHhCCCC
Confidence 99877653110 11349999999999999999811 0 0 0112245689999999999999
Q ss_pred -CCHHHHHHHHHhhhc
Q 022280 285 -VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 -~~~~~~l~~~~~~~~ 299 (300)
++++++|+++++|+-
T Consensus 323 ~~sl~egl~~~~~w~~ 338 (348)
T PRK15181 323 EFDIKEGLKQTLKWYI 338 (348)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 899999999999974
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=312.54 Aligned_cols=291 Identities=21% Similarity=0.219 Sum_probs=224.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
+++|+|||||||||||+++++.|+++| ++|++++|+........... ...+.++.+|++|.+++.++++.. ++|
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d 77 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELG---AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEF-KPE 77 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCC---CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhc-CCC
Confidence 457899999999999999999999999 89999988765433222211 234667899999999998888865 799
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccccccCCC--CCCCCCCCCCCCChhHHHH
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGVK--SFYKEEDEIAPVNVYGKSK 155 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~--~~~~E~~~~~p~~~Y~~sK 155 (300)
+|||+|+......+..++...+++|+.+++ +++++|.+.+ +++||++||..+|+... .+++|+++..|.++|+.||
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~-~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK 156 (349)
T TIGR02622 78 IVFHLAAQPLVRKSYADPLETFETNVMGTV-NLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSK 156 (349)
T ss_pred EEEECCcccccccchhCHHHHHHHhHHHHH-HHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHH
Confidence 999999975544455678889999999997 9999998876 78999999999998753 2688888888999999999
Q ss_pred HHHHHHHHHH-----------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeec-cCcccCceeHHHHHH
Q 022280 156 VAAEKFIYEK-----------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF-HDECRCPVYVRDVVK 223 (300)
Q Consensus 156 ~~~e~~~~~~-----------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~a~ 223 (300)
.++|.+++.+ +.+++++||+++|||+... ...+++.++..+. .+.++.+. |++.|+|+|++|+|+
T Consensus 157 ~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~--~~~~~~~~~~~~~-~g~~~~~~~g~~~rd~i~v~D~a~ 233 (349)
T TIGR02622 157 ACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWA--EDRLIPDVIRAFS-SNKIVIIRNPDATRPWQHVLEPLS 233 (349)
T ss_pred HHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcch--hhhhhHHHHHHHh-cCCCeEECCCCcccceeeHHHHHH
Confidence 9999998765 3467999999999997532 2233445555554 55666554 357899999999999
Q ss_pred HHHHHHhccccccccccceeeecCC--CccCHHHHHH-----hhc---------c---CCCCCccccChHHHHHhcCCCc
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGP--DRVSRVQMAE-----VDR---------G---VQSPADISMDITKLVQTLNIDP 284 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~--~~~s~~e~~~-----~~~---------~---~~~~~~~~~~~~k~~~~lg~~p 284 (300)
+++.++++.........++||++++ +.+++.|+++ ... . ........+|++|++++|||+|
T Consensus 234 a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p 313 (349)
T TIGR02622 234 GYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTLLGWHP 313 (349)
T ss_pred HHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHHHHHhCCCC
Confidence 9999887532110011249999975 6899999887 100 0 0112234579999999999999
Q ss_pred -CCHHHHHHHHHhhhc
Q 022280 285 -VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 -~~~~~~l~~~~~~~~ 299 (300)
++++++|+++++|+.
T Consensus 314 ~~~l~~gi~~~i~w~~ 329 (349)
T TIGR02622 314 RWGLEEAVSRTVDWYK 329 (349)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 899999999999975
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=311.33 Aligned_cols=284 Identities=17% Similarity=0.097 Sum_probs=218.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-----hhhhhhcC----CCceeEEEeecCCchhHHHHHHhc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-----PQLLLDAL----PHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-----~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
|+|||||||||||++|+++|+++| ++|++++|+++. ...+.... +..++++++|++|.+.+.++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 77 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG---YEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI 77 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC---CEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC
Confidence 589999999999999999999999 899999987542 11111111 235778999999999999888865
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC---eEEEeeccccccCCCC-CCCCCCCCCCCCh
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN---LLIHLSTDQVYEGVKS-FYKEEDEIAPVNV 150 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~---~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~ 150 (300)
++|+|||+|+......+...+...+++|+.|+. +++++|.+.+++ +|||+||.++||.... +++|+.+..|.++
T Consensus 78 -~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~-~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~ 155 (343)
T TIGR01472 78 -KPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTL-RLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSP 155 (343)
T ss_pred -CCCEEEECCcccccchhhhChHHHHHHHHHHHH-HHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCCCCCCh
Confidence 789999999986554444566778889999997 999999987763 8999999999997544 7899999999999
Q ss_pred hHHHHHHHHHHHHHHc----CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC-ceeecc--CcccCceeHHHHHH
Q 022280 151 YGKSKVAAEKFIYEKC----SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE-KVEFFH--DECRCPVYVRDVVK 223 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~i~v~D~a~ 223 (300)
|+.||.++|.+++.++ .++++.|+.++|||+.........+..++..+. .++ ...++| ++.++|+||+|+|+
T Consensus 156 Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~g~~~rd~i~V~D~a~ 234 (343)
T TIGR01472 156 YAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIK-LGLQEKLYLGNLDAKRDWGHAKDYVE 234 (343)
T ss_pred hHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHH-cCCCCceeeCCCccccCceeHHHHHH
Confidence 9999999999997764 356788999999987432111112222333333 343 333444 47899999999999
Q ss_pred HHHHHHhccccccccccceeeecCCCccCHHHHHH-----hhccC---------------------------CC---CCc
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRGV---------------------------QS---PAD 268 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~~---------------------------~~---~~~ 268 (300)
+++.+++++. . ++||+++++.+|+.|+++ ..... .. ...
T Consensus 235 a~~~~~~~~~-~-----~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (343)
T TIGR01472 235 AMWLMLQQDK-P-----DDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVDL 308 (343)
T ss_pred HHHHHHhcCC-C-----ccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCCCccch
Confidence 9999998742 1 289999999999999998 11000 01 112
Q ss_pred cccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 269 ISMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 269 ~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
..+|++|++++|||+| ++++++|+++++++.
T Consensus 309 ~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~ 340 (343)
T TIGR01472 309 LLGDATKAKEKLGWKPEVSFEKLVKEMVEEDL 340 (343)
T ss_pred hcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Confidence 3569999999999999 899999999999875
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=313.08 Aligned_cols=283 Identities=22% Similarity=0.331 Sum_probs=218.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeee-cCCCCCc--hhhhhhc-CCCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA-THHSTPL--PQLLLDA-LPHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~-~~r~~~~--~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
||+|||||||||||++|++.|+++| +++++ .++.... ...+... ....+.++++|++|.+++.++++.. ++|
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~D 76 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINET---SDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEH-QPD 76 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcC---CCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhc-CCC
Confidence 5799999999999999999999999 66544 4433221 1111111 1134667899999999998888864 799
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhh---------ccCCeEEEeeccccccCCC---CCCCCCCCCC
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE---------NKENLLIHLSTDQVYEGVK---SFYKEEDEIA 146 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~---------~~~~~~v~~SS~~~~~~~~---~~~~E~~~~~ 146 (300)
+||||||......+.+.++..+++|+.++. +++++|.+ .+++++|++||.++|+... .+++|+.+..
T Consensus 77 ~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~-~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~ 155 (355)
T PRK10217 77 CVMHLAAESHVDRSIDGPAAFIETNIVGTY-TLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYA 155 (355)
T ss_pred EEEECCcccCcchhhhChHHHHHHhhHHHH-HHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCC
Confidence 999999986554444567889999999997 99999976 2567999999999998642 3689998888
Q ss_pred CCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHH
Q 022280 147 PVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD 220 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D 220 (300)
|.+.|+.||.++|.+++.+ +.+++++||+++|||+.. +..+...++..+. .+.++.+++ ++.++|+|++|
T Consensus 156 p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~---~~~~~~~~~~~~~-~~~~~~~~g~g~~~~~~i~v~D 231 (355)
T PRK10217 156 PSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHF---PEKLIPLMILNAL-AGKPLPVYGNGQQIRDWLYVED 231 (355)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCC---cccHHHHHHHHHh-cCCCceEeCCCCeeeCcCcHHH
Confidence 8999999999999988765 347899999999999863 2233444555554 455666655 46899999999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCccCHHHHHH-----hhc---------------------cCCCCCccccChH
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDR---------------------GVQSPADISMDIT 274 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~---------------------~~~~~~~~~~~~~ 274 (300)
+|++++.+++.... + ++||+++++.+|+.|+++ ... .......+.+|++
T Consensus 232 ~a~a~~~~~~~~~~-~----~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 306 (355)
T PRK10217 232 HARALYCVATTGKV-G----ETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYAIDAS 306 (355)
T ss_pred HHHHHHHHHhcCCC-C----CeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcccccCHH
Confidence 99999999987432 2 389999999999999887 100 0011233568999
Q ss_pred HHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 275 KLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 275 k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
|++++|||+| ++++++|+++++||.
T Consensus 307 k~~~~lg~~p~~~l~e~l~~~~~~~~ 332 (355)
T PRK10217 307 KIARELGWLPQETFESGMRKTVQWYL 332 (355)
T ss_pred HHHHhcCCCCcCcHHHHHHHHHHHHH
Confidence 9999999999 899999999999985
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=313.60 Aligned_cols=284 Identities=23% Similarity=0.357 Sum_probs=212.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhc----CCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDA----LPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
..|+|||||||||||++|+++|+++ | ++|++++|+.+....+... ...+++++.+|++|.+++..+++ +
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g---~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~---~ 86 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETP---HKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK---M 86 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCC---CEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhh---c
Confidence 3578999999999999999999998 6 7899998875544433221 12468889999999988887776 7
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCC----------
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEI---------- 145 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~---------- 145 (300)
+|+|||+|+.........++...+..|+.+++ +++++|++.+ ++|||+||.++||.... +++|+.+.
T Consensus 87 ~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~-~ll~aa~~~~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~ 164 (386)
T PLN02427 87 ADLTINLAAICTPADYNTRPLDTIYSNFIDAL-PVVKYCSENN-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLK 164 (386)
T ss_pred CCEEEEcccccChhhhhhChHHHHHHHHHHHH-HHHHHHHhcC-CEEEEEeeeeeeCCCcCCCCCccccccccccccccc
Confidence 99999999976543333456667788999997 9999998877 79999999999986432 33332221
Q ss_pred ------------CCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCC-C---CC----CCchHHHHHHHHhc
Q 022280 146 ------------APVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTIS-P---VP----KSLPIQWIDSVLSK 201 (300)
Q Consensus 146 ------------~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~-~---~~----~~~~~~~~~~~~~~ 201 (300)
.|.+.|+.||.++|++++.+ +.+++++||++||||+... . .+ ..++..++..++ .
T Consensus 165 e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 243 (386)
T PLN02427 165 EDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL-R 243 (386)
T ss_pred ccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHh-c
Confidence 23468999999999999865 4588999999999997421 0 01 112222333444 5
Q ss_pred CCceeeccC--cccCceeHHHHHHHHHHHHhccc-cccccccceeeecCC-CccCHHHHHHh-----hc----cC-----
Q 022280 202 GEKVEFFHD--ECRCPVYVRDVVKIILALTNRWL-SEDKQMQLLLNVGGP-DRVSRVQMAEV-----DR----GV----- 263 (300)
Q Consensus 202 ~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~~~~-~~~~~~~~i~ni~~~-~~~s~~e~~~~-----~~----~~----- 263 (300)
++++.++++ +.++|+|++|+|++++.+++++. ..++ +||++++ +.+|+.|+++. .. ..
T Consensus 244 ~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~----~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~ 319 (386)
T PLN02427 244 REPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGH----IFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPT 319 (386)
T ss_pred CCCeEEECCCCceECcEeHHHHHHHHHHHHhCcccccCc----eEEeCCCCCCccHHHHHHHHHHHhccccccccccccc
Confidence 666666654 57899999999999999998753 2333 8999997 58999999981 10 00
Q ss_pred -------------CCCCccccChHHHHHhcCCCc-CCHHHHHHHHHhhh
Q 022280 264 -------------QSPADISMDITKLVQTLNIDP-VTYKDGVKLTLAAE 298 (300)
Q Consensus 264 -------------~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~ 298 (300)
........|.+|++++|||+| ++++++|+++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~ 368 (386)
T PLN02427 320 VDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQ 368 (386)
T ss_pred cccCcccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHH
Confidence 012234569999999999999 99999999999996
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=307.53 Aligned_cols=286 Identities=17% Similarity=0.124 Sum_probs=220.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-----hhhhhhc---CCCceeEEEeecCCchhHHHHHHh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-----PQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-----~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~ 73 (300)
++|+|||||||||||++|+++|+++| ++|++++|+++. ...+... .+..+.++++|++|.+.+..+++.
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKG---YEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDD 81 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC---CEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHH
Confidence 46899999999999999999999999 899999887532 1111110 123577899999999999888887
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-----eEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-----LLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-----~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
. ++|+|||||+......+..++...+++|+.|+. +++++|.+.+++ +||++||.++||....+++|+++..|.
T Consensus 82 ~-~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~-~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~E~~~~~p~ 159 (340)
T PLN02653 82 I-KPDEVYNLAAQSHVAVSFEMPDYTADVVATGAL-RLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPPPQSETTPFHPR 159 (340)
T ss_pred c-CCCEEEECCcccchhhhhhChhHHHHHHHHHHH-HHHHHHHHhccccccceeEEEeccHHHhCCCCCCCCCCCCCCCC
Confidence 6 799999999986554445567788899999996 999999988765 899999999999876689999999999
Q ss_pred ChhHHHHHHHHHHHHHHcC----CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceee-cc--CcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS----NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEF-FH--DECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~----~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~i~v~D~ 221 (300)
+.|+.||.++|.+++.++. +++..|+.++|||+.........+..++..+ ..+.++.+ .| ++.|+|+|++|+
T Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~g~~~rd~i~v~D~ 238 (340)
T PLN02653 160 SPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRI-KVGLQKKLFLGNLDASRDWGFAGDY 238 (340)
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHH-HcCCCCceEeCCCcceecceeHHHH
Confidence 9999999999999987654 4567889899998643211111122223233 24444433 34 468999999999
Q ss_pred HHHHHHHHhccccccccccceeeecCCCccCHHHHHH-----hhc-------------cCCCCCccccChHHHHHhcCCC
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDR-------------GVQSPADISMDITKLVQTLNID 283 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~-------------~~~~~~~~~~~~~k~~~~lg~~ 283 (300)
|++++.++++.. + ++||+++++.+|+.|+++ ... .........+|++|++++|||+
T Consensus 239 a~a~~~~~~~~~--~----~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~ 312 (340)
T PLN02653 239 VEAMWLMLQQEK--P----DDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLGWK 312 (340)
T ss_pred HHHHHHHHhcCC--C----CcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHHHHhCCC
Confidence 999999998742 1 279999999999999998 110 0011123457999999999999
Q ss_pred c-CCHHHHHHHHHhhhc
Q 022280 284 P-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 284 p-~~~~~~l~~~~~~~~ 299 (300)
| ++++++|+++++||-
T Consensus 313 p~~~l~~gi~~~~~~~~ 329 (340)
T PLN02653 313 PKVGFEQLVKMMVDEDL 329 (340)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 9 899999999999863
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=309.03 Aligned_cols=282 Identities=20% Similarity=0.308 Sum_probs=216.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecC-CchhHHHHHHhcCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK-SGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~d~v 80 (300)
||+|||||||||||++|+++|+++ | ++|++++|+.+....+.. ...++++++|++ +.+.+.++++ ++|+|
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~---~~V~~~~r~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~---~~d~V 72 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD---WEVYGMDMQTDRLGDLVN--HPRMHFFEGDITINKEWIEYHVK---KCDVI 72 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC---CeEEEEeCcHHHHHHhcc--CCCeEEEeCCCCCCHHHHHHHHc---CCCEE
Confidence 578999999999999999999986 6 899999987543332221 235788999998 5566666655 89999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCC-------CCCChhH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEI-------APVNVYG 152 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~-------~p~~~Y~ 152 (300)
||+|+...+.....++...+++|+.+++ +++++|++.+ +++||+||..+||.... +++|++++ +|.+.|+
T Consensus 73 iH~aa~~~~~~~~~~p~~~~~~n~~~~~-~ll~aa~~~~-~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~ 150 (347)
T PRK11908 73 LPLVAIATPATYVKQPLRVFELDFEANL-PIVRSAVKYG-KHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYA 150 (347)
T ss_pred EECcccCChHHhhcCcHHHHHHHHHHHH-HHHHHHHhcC-CeEEEEecceeeccCCCcCcCccccccccCcCCCccchHH
Confidence 9999976554455678888999999997 9999999887 69999999999997544 67776532 4567899
Q ss_pred HHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCC-----CCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHH
Q 022280 153 KSKVAAEKFIYEK----CSNFAILRSSIIYGPQTIS-----PVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDV 221 (300)
Q Consensus 153 ~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~ 221 (300)
.||.++|++++.+ +.+++++||+++|||+... .....++..++..+. .++++.+.+ ++.|+|+|++|+
T Consensus 151 ~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~g~~~r~~i~v~D~ 229 (347)
T PRK11908 151 CSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIV-RGEPISLVDGGSQKRAFTDIDDG 229 (347)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHh-CCCceEEecCCceeeccccHHHH
Confidence 9999999999865 3479999999999997532 111234445555544 556666654 578999999999
Q ss_pred HHHHHHHHhccc--cccccccceeeecCC-CccCHHHHHHhh-----c--cC----------------------CCCCcc
Q 022280 222 VKIILALTNRWL--SEDKQMQLLLNVGGP-DRVSRVQMAEVD-----R--GV----------------------QSPADI 269 (300)
Q Consensus 222 a~~~~~~~~~~~--~~~~~~~~i~ni~~~-~~~s~~e~~~~~-----~--~~----------------------~~~~~~ 269 (300)
+++++.+++++. ..+ ++||++++ ..+|++|+++.. . .. ......
T Consensus 230 a~a~~~~~~~~~~~~~g----~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (347)
T PRK11908 230 IDALMKIIENKDGVASG----KIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNR 305 (347)
T ss_pred HHHHHHHHhCccccCCC----CeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcchhccc
Confidence 999999998742 223 39999997 479999999811 0 00 001134
Q ss_pred ccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 270 SMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 270 ~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
..|++|++++|||+| ++++++|+++++|+.
T Consensus 306 ~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~ 336 (347)
T PRK11908 306 VPKIDNTMQELGWAPKTTMDDALRRIFEAYR 336 (347)
T ss_pred cCChHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 468899999999999 899999999999874
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=302.08 Aligned_cols=263 Identities=24% Similarity=0.348 Sum_probs=212.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+||||||+||||++|+++|+++| +|++++|+.. .+.+|++|++.+.++++.. ++|+||||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g----~V~~~~~~~~--------------~~~~Dl~d~~~~~~~~~~~-~~D~Vih~ 61 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG----NLIALDVHST--------------DYCGDFSNPEGVAETVRKI-RPDVIVNA 61 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC----CEEEeccccc--------------cccCCCCCHHHHHHHHHhc-CCCEEEEC
Confidence 589999999999999999999998 3777776521 1468999999888888765 79999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
|+......++.+++..+.+|+.++. +++++|++.++ ++||+||..||+.... |++|++++.|.+.|+.||..+|+++
T Consensus 62 Aa~~~~~~~~~~~~~~~~~N~~~~~-~l~~aa~~~g~-~~v~~Ss~~Vy~~~~~~p~~E~~~~~P~~~Yg~sK~~~E~~~ 139 (299)
T PRK09987 62 AAHTAVDKAESEPEFAQLLNATSVE-AIAKAANEVGA-WVVHYSTDYVFPGTGDIPWQETDATAPLNVYGETKLAGEKAL 139 (299)
T ss_pred CccCCcchhhcCHHHHHHHHHHHHH-HHHHHHHHcCC-eEEEEccceEECCCCCCCcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9988766666778888999999996 99999999887 8999999999987654 8999999999999999999999999
Q ss_pred HHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCc----ccCceeHHHHHHHHHHHHhcccccccc
Q 022280 163 YEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE----CRCPVYVRDVVKIILALTNRWLSEDKQ 238 (300)
Q Consensus 163 ~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~D~a~~~~~~~~~~~~~~~~ 238 (300)
+.++.+++++|++++|||+.. .+...++. .+..++++.+++++ .+++.+++|+++++..+++....
T Consensus 140 ~~~~~~~~ilR~~~vyGp~~~-----~~~~~~~~-~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~~---- 209 (299)
T PRK09987 140 QEHCAKHLIFRTSWVYAGKGN-----NFAKTMLR-LAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPEV---- 209 (299)
T ss_pred HHhCCCEEEEecceecCCCCC-----CHHHHHHH-HHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCCC----
Confidence 999899999999999999642 23334443 34456777777652 34555667778888777755321
Q ss_pred ccceeeecCCCccCHHHHHHhh------cc-------------------CCCCCccccChHHHHHhcCCCcCCHHHHHHH
Q 022280 239 MQLLLNVGGPDRVSRVQMAEVD------RG-------------------VQSPADISMDITKLVQTLNIDPVTYKDGVKL 293 (300)
Q Consensus 239 ~~~i~ni~~~~~~s~~e~~~~~------~~-------------------~~~~~~~~~~~~k~~~~lg~~p~~~~~~l~~ 293 (300)
.++||+++++.+|+.|+++.. .+ ..++.+..+|++|+++.|||+|.+|+++|++
T Consensus 210 -~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~~~~~~l~~ 288 (299)
T PRK09987 210 -AGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLPDWQVGVKR 288 (299)
T ss_pred -CCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCccHHHHHHH
Confidence 239999999999999988711 10 1134566799999999999999999999999
Q ss_pred HHhhh
Q 022280 294 TLAAE 298 (300)
Q Consensus 294 ~~~~~ 298 (300)
+++.+
T Consensus 289 ~~~~~ 293 (299)
T PRK09987 289 MLTEL 293 (299)
T ss_pred HHHHH
Confidence 99764
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=300.31 Aligned_cols=264 Identities=37% Similarity=0.661 Sum_probs=203.9
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
||||||||+|+||++|.+.|.++| ++|+++.|+ ..|++|.+++.+.++.. +||+||||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~---~~v~~~~r~------------------~~dl~d~~~~~~~~~~~-~pd~Vin~ 58 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG---YEVIATSRS------------------DLDLTDPEAVAKLLEAF-KPDVVINC 58 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS---EEEEEESTT------------------CS-TTSHHHHHHHHHHH---SEEEE-
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC---CEEEEeCch------------------hcCCCCHHHHHHHHHHh-CCCeEecc
Confidence 799999999999999999999999 899988765 57899999999999887 89999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
|+....+.++.+|+..+.+|+.++. ++++.|.+.+. ++||+||..||+.... |++|+++++|.+.||.+|..+|+.+
T Consensus 59 aa~~~~~~ce~~p~~a~~iN~~~~~-~la~~~~~~~~-~li~~STd~VFdG~~~~~y~E~d~~~P~~~YG~~K~~~E~~v 136 (286)
T PF04321_consen 59 AAYTNVDACEKNPEEAYAINVDATK-NLAEACKERGA-RLIHISTDYVFDGDKGGPYTEDDPPNPLNVYGRSKLEGEQAV 136 (286)
T ss_dssp -----HHHHHHSHHHHHHHHTHHHH-HHHHHHHHCT--EEEEEEEGGGS-SSTSSSB-TTS----SSHHHHHHHHHHHHH
T ss_pred ceeecHHhhhhChhhhHHHhhHHHH-HHHHHHHHcCC-cEEEeeccEEEcCCcccccccCCCCCCCCHHHHHHHHHHHHH
Confidence 9999888899999999999999996 99999999998 9999999999987755 8999999999999999999999999
Q ss_pred HHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccce
Q 022280 163 YEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLL 242 (300)
Q Consensus 163 ~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i 242 (300)
++...++.|+|++.+||+.. .. +..++...+.+++.+.++.++.++++|++|+|+++..++++...+ ...+++
T Consensus 137 ~~~~~~~~IlR~~~~~g~~~-----~~-~~~~~~~~~~~~~~i~~~~d~~~~p~~~~dlA~~i~~l~~~~~~~-~~~~Gi 209 (286)
T PF04321_consen 137 RAACPNALILRTSWVYGPSG-----RN-FLRWLLRRLRQGEPIKLFDDQYRSPTYVDDLARVILELIEKNLSG-ASPWGI 209 (286)
T ss_dssp HHH-SSEEEEEE-SEESSSS-----SS-HHHHHHHHHHCTSEEEEESSCEE--EEHHHHHHHHHHHHHHHHH--GGG-EE
T ss_pred HHhcCCEEEEecceecccCC-----Cc-hhhhHHHHHhcCCeeEeeCCceeCCEEHHHHHHHHHHHHHhcccc-ccccee
Confidence 99889999999999999932 12 335566667789999999999999999999999999999997652 233569
Q ss_pred eeecCCCccCHHHHHH--------------------hhccCCCCCccccChHHHHHhcCCCcCCHHHHHHHHHhhh
Q 022280 243 LNVGGPDRVSRVQMAE--------------------VDRGVQSPADISMDITKLVQTLNIDPVTYKDGVKLTLAAE 298 (300)
Q Consensus 243 ~ni~~~~~~s~~e~~~--------------------~~~~~~~~~~~~~~~~k~~~~lg~~p~~~~~~l~~~~~~~ 298 (300)
||+++++.+|..|+++ ......+|.+..+|++|+++.||+++.+|+++|+++++.|
T Consensus 210 yh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 210 YHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPPPWREGLEELVKQY 285 (286)
T ss_dssp EE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS---BHHHHHHHHHHHH
T ss_pred EEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCcCHHHHHHHHHHHh
Confidence 9999999999999988 1122345677889999999999999999999999999886
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=311.82 Aligned_cols=276 Identities=22% Similarity=0.324 Sum_probs=213.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhcC-CCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.|+|||||||||||++|++.|+++| ++|++++|.... ........ ...+.++.+|+.+.. +. ++|+|
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~-----~~---~~D~V 188 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPI-----LL---EVDQI 188 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCCCccHhHhhhhccCCceEEEECcccccc-----cc---CCCEE
Confidence 4799999999999999999999999 899998875322 11111111 134667788887642 22 79999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCC-----CCCCCChhHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEED-----EIAPVNVYGKS 154 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~-----~~~p~~~Y~~s 154 (300)
||+|+......+..++...+++|+.|+. +++++|++.++ ++|++||.++||.... +++|+. +..|.+.|+.+
T Consensus 189 iHlAa~~~~~~~~~~p~~~~~~Nv~gT~-nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~S 266 (436)
T PLN02166 189 YHLACPASPVHYKYNPVKTIKTNVMGTL-NMLGLAKRVGA-RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEG 266 (436)
T ss_pred EECceeccchhhccCHHHHHHHHHHHHH-HHHHHHHHhCC-EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHH
Confidence 9999976554444577889999999997 99999999886 8999999999997544 777763 55677899999
Q ss_pred HHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHH
Q 022280 155 KVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 155 K~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~ 228 (300)
|..+|++++.+ +.+++++||+++|||+.... ...+...++..++ .++++.++|+ +.++|+|++|++++++.+
T Consensus 267 K~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~-~~~~i~~~i~~~l-~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~ 344 (436)
T PLN02166 267 KRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLD-DGRVVSNFVAQTI-RKQPMTVYGDGKQTRSFQYVSDLVDGLVAL 344 (436)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCC-ccchHHHHHHHHh-cCCCcEEeCCCCeEEeeEEHHHHHHHHHHH
Confidence 99999998766 45789999999999975321 1233445566655 5666777664 579999999999999999
Q ss_pred HhccccccccccceeeecCCCccCHHHHHH-----hh---------ccCCCCCccccChHHHHHhcCCCc-CCHHHHHHH
Q 022280 229 TNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VD---------RGVQSPADISMDITKLVQTLNIDP-VTYKDGVKL 293 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~---------~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~ 293 (300)
++... .++||+++++.+|+.|+++ .. .....+....+|++|++++|||+| ++++++|++
T Consensus 345 ~~~~~------~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~~~LGw~P~~sl~egl~~ 418 (436)
T PLN02166 345 MEGEH------VGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKELLNWEPKISLREGLPL 418 (436)
T ss_pred HhcCC------CceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHH
Confidence 97532 2389999999999999998 11 011223445789999999999999 899999999
Q ss_pred HHhhhc
Q 022280 294 TLAAEA 299 (300)
Q Consensus 294 ~~~~~~ 299 (300)
+++||.
T Consensus 419 ~i~~~~ 424 (436)
T PLN02166 419 MVSDFR 424 (436)
T ss_pred HHHHHH
Confidence 999985
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=311.62 Aligned_cols=288 Identities=20% Similarity=0.171 Sum_probs=211.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC---c----h----------hhh---hhcCCCceeEEEeec
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP---L----P----------QLL---LDALPHSFVFFDVDL 61 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~---~----~----------~~~---~~~~~~~~~~~~~D~ 61 (300)
++|+|||||||||||++|+++|+++| ++|+++++... . . ..+ .......++++.+|+
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl 122 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRG---YEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI 122 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence 57899999999999999999999999 88998764211 1 0 000 001123577899999
Q ss_pred CCchhHHHHHHhcCCCCEEEEcccccCccccccCh---hhhhhcccccchHHHHHhhhhccCC-eEEEeeccccccCCCC
Q 022280 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDP---DSAMSINVPSSLVNWLSSFTENKEN-LLIHLSTDQVYEGVKS 137 (300)
Q Consensus 62 ~~~~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~---~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~ 137 (300)
+|++.+..+++.. ++|+|||+|+......+..++ +..+++|+.|+. +++++|++.+++ +||++||.++||....
T Consensus 123 ~d~~~v~~~l~~~-~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~-nlleaa~~~gv~~~~V~~SS~~vYG~~~~ 200 (442)
T PLN02572 123 CDFEFLSEAFKSF-EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTL-NVLFAIKEFAPDCHLVKLGTMGEYGTPNI 200 (442)
T ss_pred CCHHHHHHHHHhC-CCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHH-HHHHHHHHhCCCccEEEEecceecCCCCC
Confidence 9999999888865 799999999875433333233 456789999997 999999998885 9999999999996543
Q ss_pred CCCC-----------CC---CCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCC-------------
Q 022280 138 FYKE-----------ED---EIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPV------------- 186 (300)
Q Consensus 138 ~~~E-----------~~---~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~------------- 186 (300)
+++| ++ +..|.++|+.||.++|.+++.+ +.+++++||+++|||+.....
T Consensus 201 ~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~ 280 (442)
T PLN02572 201 DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDG 280 (442)
T ss_pred CCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCccc
Confidence 3332 22 4567789999999999998766 447899999999999854210
Q ss_pred -CCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhh---
Q 022280 187 -PKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD--- 260 (300)
Q Consensus 187 -~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~--- 260 (300)
.......++..+. .++++.++| ++.|+|+||+|+|++++.++++....++ ..+||+++ +.+|+.|+++..
T Consensus 281 ~~~~~i~~~~~~~~-~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~--~~i~Nigs-~~~si~el~~~i~~~ 356 (442)
T PLN02572 281 VFGTALNRFCVQAA-VGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGE--FRVFNQFT-EQFSVNELAKLVTKA 356 (442)
T ss_pred chhhHHHHHHHHHh-cCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCc--eeEEEeCC-CceeHHHHHHHHHHH
Confidence 0122334444444 456676765 4689999999999999999987432221 24899987 679999998811
Q ss_pred ---cc-C-----C----C---CCccccChHHHHHhcCCCc-C---CHHHHHHHHHhhhc
Q 022280 261 ---RG-V-----Q----S---PADISMDITKLVQTLNIDP-V---TYKDGVKLTLAAEA 299 (300)
Q Consensus 261 ---~~-~-----~----~---~~~~~~~~~k~~~~lg~~p-~---~~~~~l~~~~~~~~ 299 (300)
.+ . . . ......|++|++ +|||+| + ++.++|.+++.||.
T Consensus 357 ~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LGw~p~~~~~~l~~~l~~~~~~~~ 414 (442)
T PLN02572 357 GEKLGLDVEVISVPNPRVEAEEHYYNAKHTKLC-ELGLEPHLLSDSLLDSLLNFAVKYK 414 (442)
T ss_pred HHhhCCCCCeeeCCCCcccccccccCccHHHHH-HcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 11 0 0 0 112347899996 499999 7 89999999999974
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=302.22 Aligned_cols=294 Identities=18% Similarity=0.233 Sum_probs=220.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh----hhhh---cCCCceeEEEeecCCchhHHHHHHh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ----LLLD---ALPHSFVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~----~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (300)
|++++|||||||||||++|+++|+++| ++|++++|...... .... ..+..+.++.+|++|++.+..+++.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~ 79 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAG---YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAS 79 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHh
Confidence 356799999999999999999999999 88999887532211 1111 1124577889999999988888775
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhH
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYG 152 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~ 152 (300)
. ++|+|||+|+.........++...++.|+.++. +++++|.+.++++||++||..+|+.... +++|+++..|.+.|+
T Consensus 80 ~-~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~~~~~Y~ 157 (352)
T PLN02240 80 T-RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTI-NLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEFPLSATNPYG 157 (352)
T ss_pred C-CCCEEEEccccCCccccccCHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCCHHH
Confidence 5 899999999976543344567889999999996 9999999889999999999999986544 899999999999999
Q ss_pred HHHHHHHHHHHHHc-----CCceeEeeeeeeCCCCCC---CCCCCc---hHHHHHHHHhcC-Cceeecc--------Ccc
Q 022280 153 KSKVAAEKFIYEKC-----SNFAILRSSIIYGPQTIS---PVPKSL---PIQWIDSVLSKG-EKVEFFH--------DEC 212 (300)
Q Consensus 153 ~sK~~~e~~~~~~~-----~~~~ilR~~~v~G~~~~~---~~~~~~---~~~~~~~~~~~~-~~~~~~~--------~~~ 212 (300)
.||.++|++++.+. .+++++|++++||++... ..+... +..++....... ..+.++| .+.
T Consensus 158 ~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 237 (352)
T PLN02240 158 RTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGV 237 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEE
Confidence 99999999998653 256889999999975321 111111 122444443222 2344433 467
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhh-----c---------cCCCCCccccChHHHHH
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD-----R---------GVQSPADISMDITKLVQ 278 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~-----~---------~~~~~~~~~~~~~k~~~ 278 (300)
++|+|++|+|++++.++++....+...+++||+++++.+|++|+++.. . ..........|++|+++
T Consensus 238 ~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 317 (352)
T PLN02240 238 RDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRRPGDAEEVYASTEKAEK 317 (352)
T ss_pred EeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCCCCCChhhhhcCHHHHHH
Confidence 999999999999999887642221222349999999999999999811 0 01111234579999999
Q ss_pred hcCCCc-CCHHHHHHHHHhhhc
Q 022280 279 TLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 279 ~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
+|||+| ++++++|+++++|+.
T Consensus 318 ~lg~~p~~~l~~~l~~~~~~~~ 339 (352)
T PLN02240 318 ELGWKAKYGIDEMCRDQWNWAS 339 (352)
T ss_pred HhCCCCCCCHHHHHHHHHHHHH
Confidence 999999 799999999999974
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=307.78 Aligned_cols=276 Identities=22% Similarity=0.291 Sum_probs=212.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhcC-CCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.|+|||||||||||++|++.|+++| ++|++++|.... .......+ ..++.++.+|+.++. +. ++|+|
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~-----l~---~~D~V 187 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPI-----LL---EVDQI 187 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCc---CEEEEEeCCCccchhhhhhhccCCceEEEECCccChh-----hc---CCCEE
Confidence 5899999999999999999999999 899988765321 11111111 235677788887752 22 79999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCC-----CCCCCChhHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEED-----EIAPVNVYGKS 154 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~-----~~~p~~~Y~~s 154 (300)
||+|+...+.....++...+++|+.++. +++++|++.++ +|||+||..+|+.... +.+|+. +..+.+.|+.+
T Consensus 188 iHlAa~~~~~~~~~~p~~~~~~Nv~gt~-nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~S 265 (442)
T PLN02206 188 YHLACPASPVHYKFNPVKTIKTNVVGTL-NMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEG 265 (442)
T ss_pred EEeeeecchhhhhcCHHHHHHHHHHHHH-HHHHHHHHhCC-EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHH
Confidence 9999977654445578889999999997 99999999887 8999999999987544 677764 44456789999
Q ss_pred HHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHH
Q 022280 155 KVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 155 K~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~ 228 (300)
|.++|+++..+ +.+++++||+++|||+.... ...+...++.+++ .++++.++++ +.++|+|++|+|++++.+
T Consensus 266 K~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~-~~~~v~~~i~~~l-~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a 343 (442)
T PLN02206 266 KRTAETLTMDYHRGANVEVRIARIFNTYGPRMCID-DGRVVSNFVAQAL-RKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 343 (442)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcc-ccchHHHHHHHHH-cCCCcEEeCCCCEEEeEEeHHHHHHHHHHH
Confidence 99999988764 45889999999999974321 1233445565555 5566676664 589999999999999999
Q ss_pred HhccccccccccceeeecCCCccCHHHHHHhh--------------ccCCCCCccccChHHHHHhcCCCc-CCHHHHHHH
Q 022280 229 TNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD--------------RGVQSPADISMDITKLVQTLNIDP-VTYKDGVKL 293 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~--------------~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~ 293 (300)
+++.. .++||+++++.+|+.|+++.. .....+....+|++|++++|||+| ++++++|++
T Consensus 344 ~e~~~------~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~sKa~~~LGw~P~~~l~egl~~ 417 (442)
T PLN02206 344 MEGEH------VGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPL 417 (442)
T ss_pred HhcCC------CceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHH
Confidence 87632 238999999999999998810 011123445689999999999999 899999999
Q ss_pred HHhhhc
Q 022280 294 TLAAEA 299 (300)
Q Consensus 294 ~~~~~~ 299 (300)
+++||.
T Consensus 418 ~~~~~~ 423 (442)
T PLN02206 418 MVKDFR 423 (442)
T ss_pred HHHHHH
Confidence 999984
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=300.83 Aligned_cols=281 Identities=23% Similarity=0.252 Sum_probs=216.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+|+|||||||||||++|++.|+++| ++|++++|...... ........++.+|++|.+.+..+++ ++|+|||
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~r~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~---~~D~Vih 91 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG---HYIIASDWKKNEHM---SEDMFCHEFHLVDLRVMENCLKVTK---GVDHVFN 91 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC---CEEEEEEecccccc---ccccccceEEECCCCCHHHHHHHHh---CCCEEEE
Confidence 5899999999999999999999999 89999998643211 1111124567899999877766665 8999999
Q ss_pred cccccCcc-ccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-----CCCCCC--CCCCCChhHHH
Q 022280 83 CAALSVPR-VCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-----FYKEED--EIAPVNVYGKS 154 (300)
Q Consensus 83 ~a~~~~~~-~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-----~~~E~~--~~~p~~~Y~~s 154 (300)
+|+..... ....++...+..|+.++. +++++|++.++++|||+||..+|+.... +++|++ +..|.+.|+.+
T Consensus 92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~-nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~s 170 (370)
T PLN02695 92 LAADMGGMGFIQSNHSVIMYNNTMISF-NMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLE 170 (370)
T ss_pred cccccCCccccccCchhhHHHHHHHHH-HHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHH
Confidence 99865422 122345566788999996 9999999999999999999999987532 466665 66788999999
Q ss_pred HHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCC-CCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHH
Q 022280 155 KVAAEKFIYEK----CSNFAILRSSIIYGPQTISPV-PKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILA 227 (300)
Q Consensus 155 K~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~ 227 (300)
|..+|++++.+ +.+++++||+++|||+..... ....+..++..++..+.++.++++ +.++|+|++|++++++.
T Consensus 171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~ 250 (370)
T PLN02695 171 KLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLR 250 (370)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHH
Confidence 99999988764 457899999999999753222 233455666666655567777654 68999999999999999
Q ss_pred HHhccccccccccceeeecCCCccCHHHHHHhhc---c----------CCCCCccccChHHHHHhcCCCc-CCHHHHHHH
Q 022280 228 LTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDR---G----------VQSPADISMDITKLVQTLNIDP-VTYKDGVKL 293 (300)
Q Consensus 228 ~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~---~----------~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~ 293 (300)
++++.. .++||+++++.+|++|+++... + ........+|++|++++|||+| ++++++|++
T Consensus 251 ~~~~~~------~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~sk~~~~lgw~p~~~l~e~i~~ 324 (370)
T PLN02695 251 LTKSDF------REPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRI 324 (370)
T ss_pred HHhccC------CCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCCCccccccCHHHHHHhcCCCCCCCHHHHHHH
Confidence 887632 2389999999999999998110 0 1111334689999999999999 899999999
Q ss_pred HHhhhc
Q 022280 294 TLAAEA 299 (300)
Q Consensus 294 ~~~~~~ 299 (300)
+++|+.
T Consensus 325 ~~~~~~ 330 (370)
T PLN02695 325 TYFWIK 330 (370)
T ss_pred HHHHHH
Confidence 999974
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=321.41 Aligned_cols=285 Identities=20% Similarity=0.314 Sum_probs=218.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchh-HHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSG-FDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~~d~ 79 (300)
++|+|||||||||||++|+++|+++ | ++|++++|.......+.. ..+++++.+|++|.++ ++.+++ ++|+
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g---~~V~~l~r~~~~~~~~~~--~~~~~~~~gDl~d~~~~l~~~l~---~~D~ 385 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDN---YEVYGLDIGSDAISRFLG--HPRFHFVEGDISIHSEWIEYHIK---KCDV 385 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCC---cEEEEEeCCchhhhhhcC--CCceEEEeccccCcHHHHHHHhc---CCCE
Confidence 4689999999999999999999985 7 899999987644332221 2357888999999765 345554 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCC-------CCCChh
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEI-------APVNVY 151 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~-------~p~~~Y 151 (300)
|||+|+...+..+..++...+++|+.++. +++++|++.+ ++|||+||..+||.... +++|+++. .|.+.|
T Consensus 386 ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~-~ll~a~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Y 463 (660)
T PRK08125 386 VLPLVAIATPIEYTRNPLRVFELDFEENL-KIIRYCVKYN-KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIY 463 (660)
T ss_pred EEECccccCchhhccCHHHHHHhhHHHHH-HHHHHHHhcC-CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccch
Confidence 99999987654455577888999999997 9999999988 79999999999997544 78887643 345689
Q ss_pred HHHHHHHHHHHHHHc----CCceeEeeeeeeCCCCCCC-----CCCCchHHHHHHHHhcCCceeecc--CcccCceeHHH
Q 022280 152 GKSKVAAEKFIYEKC----SNFAILRSSIIYGPQTISP-----VPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD 220 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D 220 (300)
+.||.++|.+++.++ .+++++||+++|||+.... .+......++..+. .++++.+.| ++.|+|+|++|
T Consensus 464 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~-~~~~i~~~g~g~~~rd~i~v~D 542 (660)
T PRK08125 464 SVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLV-EGSPIKLVDGGKQKRCFTDIRD 542 (660)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhc-CCCCeEEeCCCceeeceeeHHH
Confidence 999999999997654 4889999999999975321 12233445555554 456666665 46899999999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCC-ccCHHHHHHh-----hcc-------C-----------------CCCCccc
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPD-RVSRVQMAEV-----DRG-------V-----------------QSPADIS 270 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~-~~s~~e~~~~-----~~~-------~-----------------~~~~~~~ 270 (300)
+|++++.+++++... ..+++||+++++ .+|++|+++. ... . .......
T Consensus 543 va~a~~~~l~~~~~~--~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (660)
T PRK08125 543 GIEALFRIIENKDNR--CDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQDVEHRK 620 (660)
T ss_pred HHHHHHHHHhccccc--cCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccccccccccccccC
Confidence 999999999874211 113399999986 7999999981 000 0 0112234
Q ss_pred cChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 271 MDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 271 ~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
+|++|++++|||+| ++++++|+++++|+.
T Consensus 621 ~d~~ka~~~LGw~P~~~lee~l~~~i~~~~ 650 (660)
T PRK08125 621 PSIRNARRLLDWEPKIDMQETIDETLDFFL 650 (660)
T ss_pred CChHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 79999999999999 899999999999974
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=297.65 Aligned_cols=282 Identities=22% Similarity=0.341 Sum_probs=214.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCce-eeecCCCC--CchhhhhhcC-CCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATHHST--PLPQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~-v~~~~r~~--~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|+|||||||||||++|++.|+++| ++ |++..+.. .....+.... ...++++.+|++|.+++.++++.. ++|+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 76 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNT---QDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQH-QPDA 76 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhC---CCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhc-CCCE
Confidence 589999999999999999999999 44 55444432 1111121111 234677899999999998888764 7999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhc---------cCCeEEEeeccccccCCC-----------CCC
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN---------KENLLIHLSTDQVYEGVK-----------SFY 139 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~---------~~~~~v~~SS~~~~~~~~-----------~~~ 139 (300)
|||+|+..........++..+++|+.|+. +++++|.+. +++++||+||.++|+... .++
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~N~~gt~-~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~ 155 (352)
T PRK10084 77 VMHLAAESHVDRSITGPAAFIETNIVGTY-VLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLF 155 (352)
T ss_pred EEECCcccCCcchhcCchhhhhhhhHHHH-HHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCc
Confidence 99999976543344567889999999997 999999864 467999999999998631 147
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--Cccc
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECR 213 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 213 (300)
+|+++..|.+.|+.||.++|.+++.+ +.+++++|++.+|||+.. +..+...++..+. .+..+.+++ ++.+
T Consensus 156 ~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~---~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 231 (352)
T PRK10084 156 TETTAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHF---PEKLIPLVILNAL-EGKPLPIYGKGDQIR 231 (352)
T ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcC---ccchHHHHHHHHh-cCCCeEEeCCCCeEE
Confidence 88888889999999999999988765 457899999999999853 2233444455544 455666654 5689
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH-----hhc------c-----------CCCCCcccc
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDR------G-----------VQSPADISM 271 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~------~-----------~~~~~~~~~ 271 (300)
+|+|++|+|++++.++++... +++||+++++.+|+.|+++ ... . ......+.+
T Consensus 232 ~~v~v~D~a~a~~~~l~~~~~-----~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 306 (352)
T PRK10084 232 DWLYVEDHARALYKVVTEGKA-----GETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAI 306 (352)
T ss_pred eeEEHHHHHHHHHHHHhcCCC-----CceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCCceeee
Confidence 999999999999999986432 2389999999999999877 100 0 001123468
Q ss_pred ChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 272 DITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 272 ~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
|++|++++|||+| ++++++|+++++|+.
T Consensus 307 d~~k~~~~lg~~p~~~l~~~l~~~~~~~~ 335 (352)
T PRK10084 307 DASKISRELGWKPQETFESGIRKTVEWYL 335 (352)
T ss_pred CHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999 899999999999875
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=279.07 Aligned_cols=290 Identities=22% Similarity=0.243 Sum_probs=234.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC----chhhhhhcCC--CceeEEEeecCCchhHHHHHHhcCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP----LPQLLLDALP--HSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~----~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
.++||||||+||||+|.+-+|+++| |.|++++.=.. .........+ ..+.++++|+.|.++++.+++.. +
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~g---y~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~-~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRG---YGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEV-K 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCC---CcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhc-C
Confidence 5799999999999999999999999 89998876422 2222333333 67889999999999999999988 8
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCC-CCChhHHH
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIA-PVNVYGKS 154 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~-p~~~Y~~s 154 (300)
+|.|+|+|+......+.++|..++..|+.|++ ++++.|++.+++.+|+.||+.+||.... |++|+++.. |.++|+.+
T Consensus 78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtl-nlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~t 156 (343)
T KOG1371|consen 78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTL-NLLEVMKAHNVKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKT 156 (343)
T ss_pred CceEEeehhhhccchhhhCchhheehhhhhHH-HHHHHHHHcCCceEEEecceeeecCcceeeccCcCCCCCCCCcchhh
Confidence 99999999998888888899999999999998 9999999999999999999999999887 999999987 99999999
Q ss_pred HHHHHHHHHHHcC----CceeEeeeeeeC--CCC-----CCCCCCCchHHHHHHHHhcCCceee--------ccCcccCc
Q 022280 155 KVAAEKFIYEKCS----NFAILRSSIIYG--PQT-----ISPVPKSLPIQWIDSVLSKGEKVEF--------FHDECRCP 215 (300)
Q Consensus 155 K~~~e~~~~~~~~----~~~ilR~~~v~G--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 215 (300)
|.++|+++..+.. .++.||.++++| |.. ....+..+.+....-++.....+.+ .|+..|++
T Consensus 157 K~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~dgt~vrdy 236 (343)
T KOG1371|consen 157 KKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTIDGTIVRDY 236 (343)
T ss_pred hHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccccCCCeeecc
Confidence 9999999998765 457899999999 321 1112222222111111211122222 34568999
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH--------------hhccCCCCCccccChHHHHHhcC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE--------------VDRGVQSPADISMDITKLVQTLN 281 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~--------------~~~~~~~~~~~~~~~~k~~~~lg 281 (300)
+|+-|.|+....++.......+ .++||++++...++.+++. ..++..+....+.+.++++++||
T Consensus 237 i~v~Dla~~h~~al~k~~~~~~--~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~~ya~~~~a~~elg 314 (343)
T KOG1371|consen 237 IHVLDLADGHVAALGKLRGAAE--FGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAFVYANPSKAQRELG 314 (343)
T ss_pred eeeEehHHHHHHHhhccccchh--eeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCCCCceeeeeChHHHHHHhC
Confidence 9999999999999999765444 3499999999999999888 22333445567889999999999
Q ss_pred CCc-CCHHHHHHHHHhhhc
Q 022280 282 IDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 282 ~~p-~~~~~~l~~~~~~~~ 299 (300)
|+| ++++++++++..|..
T Consensus 315 wk~~~~iee~c~dlw~W~~ 333 (343)
T KOG1371|consen 315 WKAKYGLQEMLKDLWRWQK 333 (343)
T ss_pred CccccCHHHHHHHHHHHHh
Confidence 999 899999999999975
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=293.51 Aligned_cols=275 Identities=19% Similarity=0.195 Sum_probs=208.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh-hhhcC---CCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL-LLDAL---PHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~-~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
++|+|||||||||||++|+++|+++| ++|+++.|+.+.... ....+ ...+.++.+|++|.+++..+++ ++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~ 82 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERG---YTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID---GC 82 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh---cC
Confidence 46899999999999999999999999 899999987553211 11111 2357788999999988888777 89
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecc-ccccCCC----CCCCCCC------CCC
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTD-QVYEGVK----SFYKEED------EIA 146 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~-~~~~~~~----~~~~E~~------~~~ 146 (300)
|+|||+|+... .++...+++|+.++. +++++|++.++++||++||. ++|+... .+++|++ +.+
T Consensus 83 d~Vih~A~~~~-----~~~~~~~~~nv~gt~-~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~ 156 (342)
T PLN02214 83 DGVFHTASPVT-----DDPEQMVEPAVNGAK-FVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKN 156 (342)
T ss_pred CEEEEecCCCC-----CCHHHHHHHHHHHHH-HHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccc
Confidence 99999998642 357788999999996 99999999999999999996 5887432 1478875 334
Q ss_pred CCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 147 PVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
|.+.|+.||..+|++++.+ +.+++++||++||||+....... .... +...+ .+... ..+++.++|+|++|+|
T Consensus 157 p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~-~~~~-~~~~~-~g~~~-~~~~~~~~~i~V~Dva 232 (342)
T PLN02214 157 TKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINA-SLYH-VLKYL-TGSAK-TYANLTQAYVDVRDVA 232 (342)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCc-hHHH-HHHHH-cCCcc-cCCCCCcCeeEHHHHH
Confidence 6778999999999999775 45789999999999985422211 1212 22333 23322 3456789999999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCccCHHHHHHhhc----------c-----CCCCCccccChHHHHHhcCCCcCCH
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDR----------G-----VQSPADISMDITKLVQTLNIDPVTY 287 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~----------~-----~~~~~~~~~~~~k~~~~lg~~p~~~ 287 (300)
++++.+++++..++ .||+++ ..+++.|+++... . ........+|++|++ +|||+|+++
T Consensus 233 ~a~~~al~~~~~~g-----~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~LG~~p~~l 305 (342)
T PLN02214 233 LAHVLVYEAPSASG-----RYLLAE-SARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIK-DLGLEFTST 305 (342)
T ss_pred HHHHHHHhCcccCC-----cEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcHHHH-HcCCcccCH
Confidence 99999998854333 799987 5789999988110 0 011123458999997 599999999
Q ss_pred HHHHHHHHhhhc
Q 022280 288 KDGVKLTLAAEA 299 (300)
Q Consensus 288 ~~~l~~~~~~~~ 299 (300)
+++|+++++|+.
T Consensus 306 ee~i~~~~~~~~ 317 (342)
T PLN02214 306 KQSLYDTVKSLQ 317 (342)
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=291.11 Aligned_cols=279 Identities=17% Similarity=0.139 Sum_probs=210.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh---hc--CCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL---DA--LPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~---~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
.+|+||||||+||||++++++|+++| ++|+++.|+........ .. ...++.++++|++|.+++.++++ +
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~---~ 77 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRG---YTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID---G 77 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC---CEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc---C
Confidence 36899999999999999999999999 89988888765432221 11 12357788999999998888776 7
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhc-cCCeEEEeeccccccCC------CCCCCCCCCCCC--
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQVYEGV------KSFYKEEDEIAP-- 147 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~------~~~~~E~~~~~p-- 147 (300)
+|+|||||+......+...+...+++|+.+++ +++++|.+. +.++||++||..+|+.. ..+++|+++..|
T Consensus 78 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~-~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~ 156 (325)
T PLN02989 78 CETVFHTASPVAITVKTDPQVELINPAVNGTI-NVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSF 156 (325)
T ss_pred CCEEEEeCCCCCCCCCCChHHHHHHHHHHHHH-HHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhH
Confidence 99999999976443334456788999999997 999999874 57899999998876542 126788887765
Q ss_pred ----CChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 148 ----VNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 148 ----~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
.+.|+.||..+|.+++.+ +.+++++||+++|||+.... ..+...++..++ .++.+ .+.+.++|+|++
T Consensus 157 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~--~~~~~~~i~~~~-~~~~~--~~~~~r~~i~v~ 231 (325)
T PLN02989 157 AEERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPT--LNFSVAVIVELM-KGKNP--FNTTHHRFVDVR 231 (325)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCC--CCchHHHHHHHH-cCCCC--CCCcCcCeeEHH
Confidence 367999999999988764 45789999999999985421 112334455554 33332 234568999999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH-----hh-----ccCCCC-----CccccChHHHHHhcCCCc
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VD-----RGVQSP-----ADISMDITKLVQTLNIDP 284 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~-----~~~~~~-----~~~~~~~~k~~~~lg~~p 284 (300)
|+|++++.+++++... ++||++ ++.+|++|+++ .. ...... ..+..|++|+++ |||.|
T Consensus 232 Dva~a~~~~l~~~~~~-----~~~ni~-~~~~s~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-lg~~p 304 (325)
T PLN02989 232 DVALAHVKALETPSAN-----GRYIID-GPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKS-LGIIE 304 (325)
T ss_pred HHHHHHHHHhcCcccC-----ceEEEe-cCCCCHHHHHHHHHHHCCCCCCCCCCCCcccccccCcCCCHHHHHH-cCCCC
Confidence 9999999999875432 279995 56899999998 11 001111 245688999975 99999
Q ss_pred -CCHHHHHHHHHhhhc
Q 022280 285 -VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 -~~~~~~l~~~~~~~~ 299 (300)
++++++|+++++|+.
T Consensus 305 ~~~l~~gi~~~~~~~~ 320 (325)
T PLN02989 305 FTPTETSLRDTVLSLK 320 (325)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 899999999999974
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=271.41 Aligned_cols=282 Identities=22% Similarity=0.306 Sum_probs=226.4
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC---CCchhhhhhc-CCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS---TPLPQLLLDA-LPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~---~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
++++||||.||||++.+..+.+.=.+ +..+..+.= .. ...+... ..++..++++|+.+...+..++... .+|.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~-~~~v~idkL~~~s~-~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~-~id~ 83 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPD-YKFVNLDKLDYCSN-LKNLEPVRNSPNYKFVEGDIADADLVLYLFETE-EIDT 83 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCC-CcEEEEeecccccc-cchhhhhccCCCceEeeccccchHHHHhhhccC-chhh
Confidence 78999999999999999999887544 444433321 11 1111111 1467788999999988888887765 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhc-cCCeEEEeeccccccCCCC-CCC-CCCCCCCCChhHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQVYEGVKS-FYK-EEDEIAPVNVYGKSKV 156 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~-~~~-E~~~~~p~~~Y~~sK~ 156 (300)
|+|.|+.+..+.+..++.+....|+.++. .|+++++.. ++++|||+||.+|||...+ ... |.+.++|.++|++||+
T Consensus 84 vihfaa~t~vd~s~~~~~~~~~nnil~t~-~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnpyAasKa 162 (331)
T KOG0747|consen 84 VIHFAAQTHVDRSFGDSFEFTKNNILSTH-VLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAASKA 162 (331)
T ss_pred hhhhHhhhhhhhhcCchHHHhcCCchhhh-hHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCchHHHHH
Confidence 99999998887777788899999999996 999999987 6799999999999999886 444 8899999999999999
Q ss_pred HHHHHHHHHcC----CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHh
Q 022280 157 AAEKFIYEKCS----NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 157 ~~e~~~~~~~~----~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~ 230 (300)
++|..+++++. +++++|.++||||+.. +-.++++|+..+. .+++.++-|+ +.|+|+|++|+++++..+++
T Consensus 163 AaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~---~~klipkFi~l~~-~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~ 238 (331)
T KOG0747|consen 163 AAEMLVRSYGRSYGLPVVTTRMNNVYGPNQY---PEKLIPKFIKLAM-RGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLE 238 (331)
T ss_pred HHHHHHHHHhhccCCcEEEEeccCccCCCcC---hHHHhHHHHHHHH-hCCCcceecCcccceeeEeHHHHHHHHHHHHh
Confidence 99999988764 7799999999999875 3445556665444 5667777765 67999999999999999999
Q ss_pred ccccccccccceeeecCCCccCHHHHHH---------------------hhccCCCCCccccChHHHHHhcCCCc-CCHH
Q 022280 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAE---------------------VDRGVQSPADISMDITKLVQTLNIDP-VTYK 288 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~~~~s~~e~~~---------------------~~~~~~~~~~~~~~~~k~~~~lg~~p-~~~~ 288 (300)
.+. .|+ ||||++....+..|+++ +..++..-..+.++.+|++ .|||+| ++|+
T Consensus 239 Kg~-~ge----IYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik-~LGw~~~~p~~ 312 (331)
T KOG0747|consen 239 KGE-LGE----IYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIK-KLGWRPTTPWE 312 (331)
T ss_pred cCC-ccc----eeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHH-hcCCcccCcHH
Confidence 943 334 99999999999999888 1112222244679999997 799999 8999
Q ss_pred HHHHHHHhhhc
Q 022280 289 DGVKLTLAAEA 299 (300)
Q Consensus 289 ~~l~~~~~~~~ 299 (300)
+||+.+++||.
T Consensus 313 eGLrktie~y~ 323 (331)
T KOG0747|consen 313 EGLRKTIEWYT 323 (331)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=273.09 Aligned_cols=259 Identities=27% Similarity=0.444 Sum_probs=229.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|||||++|.+|++|++.|. .+ ++|+.++|. ..|++|++.+.+++.+. +||+|||+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~---~~v~a~~~~------------------~~Ditd~~~v~~~i~~~-~PDvVIn~ 57 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GE---FEVIATDRA------------------ELDITDPDAVLEVIRET-RPDVVINA 57 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CC---ceEEeccCc------------------cccccChHHHHHHHHhh-CCCEEEEC
Confidence 359999999999999999998 55 899988875 37999999999999887 99999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
|+++..+.++.+++..+.+|..|+. +++++|++.|. ++||+||-.||....+ |+.|+|+++|.+.||+||.+.|..+
T Consensus 58 AAyt~vD~aE~~~e~A~~vNa~~~~-~lA~aa~~~ga-~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~sKl~GE~~v 135 (281)
T COG1091 58 AAYTAVDKAESEPELAFAVNATGAE-NLARAAAEVGA-RLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEAV 135 (281)
T ss_pred ccccccccccCCHHHHHHhHHHHHH-HHHHHHHHhCC-eEEEeecceEecCCCCCCCCCCCCCCChhhhhHHHHHHHHHH
Confidence 9999999999999999999999996 99999999999 9999999999988885 9999999999999999999999999
Q ss_pred HHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccce
Q 022280 163 YEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLL 242 (300)
Q Consensus 163 ~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i 242 (300)
++.+.+..|+|.+.+||.... . +...+.+..+.++.+.+..++..+++++.|+|+++..++......+ +
T Consensus 136 ~~~~~~~~I~Rtswv~g~~g~-----n-Fv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~~~~-----~ 204 (281)
T COG1091 136 RAAGPRHLILRTSWVYGEYGN-----N-FVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEKEGG-----V 204 (281)
T ss_pred HHhCCCEEEEEeeeeecCCCC-----C-HHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhccccCc-----E
Confidence 999999999999999998641 1 3345666677888999999999999999999999999999855443 8
Q ss_pred eeecCCCccCHHHHHH--------------------hhccCCCCCccccChHHHHHhcCCCcCCHHHHHHHHHhhh
Q 022280 243 LNVGGPDRVSRVQMAE--------------------VDRGVQSPADISMDITKLVQTLNIDPVTYKDGVKLTLAAE 298 (300)
Q Consensus 243 ~ni~~~~~~s~~e~~~--------------------~~~~~~~~~~~~~~~~k~~~~lg~~p~~~~~~l~~~~~~~ 298 (300)
||+.+...+|+-|+++ .+....+|.+-.+|+.|+++.+|+.|..|+++++++++..
T Consensus 205 yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~~w~~~l~~~~~~~ 280 (281)
T COG1091 205 YHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLPEWREALKALLDEL 280 (281)
T ss_pred EEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCccHHHHHHHHHhhc
Confidence 9999988899999988 1222345667789999999999999999999999998753
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=291.36 Aligned_cols=289 Identities=21% Similarity=0.230 Sum_probs=215.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh---hhcC-CCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL---LDAL-PHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~---~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|+|||||||||||++|++.|+++| ++|+++.|..+..... .... +....++.+|++|++++..+++.. ++|+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 76 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDH-AIDT 76 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcC-CCCE
Confidence 589999999999999999999999 8898887643322211 1111 234567899999998888877654 7999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCC-CCCChhHHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEI-APVNVYGKSKVA 157 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~-~p~~~Y~~sK~~ 157 (300)
|||+|+..........+...+++|+.++. +++++|++.++++||++||..+|+.... +++|+++. .|.+.|+.+|.+
T Consensus 77 vvh~a~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 155 (338)
T PRK10675 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTL-RLISAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLM 155 (338)
T ss_pred EEECCccccccchhhCHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHH
Confidence 99999976543333456778999999996 9999999999999999999999986544 78998886 688999999999
Q ss_pred HHHHHHHHc-----CCceeEeeeeeeCCCCCC---CCCCCc---hHHHHHHHHhcC-Cceeec--------cCcccCcee
Q 022280 158 AEKFIYEKC-----SNFAILRSSIIYGPQTIS---PVPKSL---PIQWIDSVLSKG-EKVEFF--------HDECRCPVY 217 (300)
Q Consensus 158 ~e~~~~~~~-----~~~~ilR~~~v~G~~~~~---~~~~~~---~~~~~~~~~~~~-~~~~~~--------~~~~~~~i~ 217 (300)
+|+++++++ .+++++|++.+||+.... +.+... ...++..+..+. ..+.++ |.+.++|+|
T Consensus 156 ~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 235 (338)
T PRK10675 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEE
Confidence 999998764 257899999999985321 111111 122344444332 223333 346799999
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhh-----c---------cCCCCCccccChHHHHHhcCCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD-----R---------GVQSPADISMDITKLVQTLNID 283 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~-----~---------~~~~~~~~~~~~~k~~~~lg~~ 283 (300)
++|+|++++.+++..... ..+++||+++++.+|+.|+++.. . .........+|++|++++|||+
T Consensus 236 v~D~a~~~~~~~~~~~~~--~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~lg~~ 313 (338)
T PRK10675 236 VMDLADGHVAAMEKLANK--PGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWR 313 (338)
T ss_pred HHHHHHHHHHHHHhhhcc--CCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCCCCchhhhhcCHHHHHHHhCCC
Confidence 999999999999762111 11249999999999999998810 0 0111234567999999999999
Q ss_pred c-CCHHHHHHHHHhhhc
Q 022280 284 P-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 284 p-~~~~~~l~~~~~~~~ 299 (300)
| ++++++|+++++|+-
T Consensus 314 p~~~~~~~~~~~~~~~~ 330 (338)
T PRK10675 314 VTRTLDEMAQDTWHWQS 330 (338)
T ss_pred CcCcHHHHHHHHHHHHH
Confidence 9 899999999999974
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=267.38 Aligned_cols=276 Identities=26% Similarity=0.361 Sum_probs=224.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.++|+||||.||||+||+++|..+| .+|++++.--..-....... .+..+.+..|+..+ ++. .+|.|
T Consensus 27 ~lrI~itGgaGFIgSHLvdkLm~eg---h~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~p-----l~~---evD~I 95 (350)
T KOG1429|consen 27 NLRILITGGAGFIGSHLVDKLMTEG---HEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEP-----LLK---EVDQI 95 (350)
T ss_pred CcEEEEecCcchHHHHHHHHHHhcC---CeEEEEecccccchhhcchhccCcceeEEEeechhH-----HHH---Hhhhh
Confidence 4799999999999999999999999 78998887533222221111 34455556666554 555 79999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCC-----CCCCCChhHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEED-----EIAPVNVYGKS 154 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~-----~~~p~~~Y~~s 154 (300)
+|+|++.++.....+|..++..|+.+++ +.+..|++.+. ||++.||.+|||.... |..|+. |..|.+.|...
T Consensus 96 yhLAapasp~~y~~npvktIktN~igtl-n~lglakrv~a-R~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydeg 173 (350)
T KOG1429|consen 96 YHLAAPASPPHYKYNPVKTIKTNVIGTL-NMLGLAKRVGA-RFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEG 173 (350)
T ss_pred hhhccCCCCcccccCccceeeecchhhH-HHHHHHHHhCc-eEEEeecccccCCcccCCCccccccccCcCCchhhhhHH
Confidence 9999999888788899999999999998 99999998884 9999999999999654 666654 34578899999
Q ss_pred HHHHHHHHHHHcC----CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHH
Q 022280 155 KVAAEKFIYEKCS----NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 155 K~~~e~~~~~~~~----~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~ 228 (300)
|..+|.++..+++ ++.|.|+.++|||...... .....-++.+++ ++.++.++|+ |.|+|.||+|++++++.+
T Consensus 174 Kr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~d-grvvsnf~~q~l-r~epltv~g~G~qtRSF~yvsD~Vegll~L 251 (350)
T KOG1429|consen 174 KRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDD-GRVVSNFIAQAL-RGEPLTVYGDGKQTRSFQYVSDLVEGLLRL 251 (350)
T ss_pred HHHHHHHHHHhhcccCcEEEEEeeecccCCccccCC-ChhhHHHHHHHh-cCCCeEEEcCCcceEEEEeHHHHHHHHHHH
Confidence 9999999988765 7899999999999864433 444445566666 7889999986 689999999999999999
Q ss_pred HhccccccccccceeeecCCCccCHHHHHH--------------hhccCCCCCccccChHHHHHhcCCCc-CCHHHHHHH
Q 022280 229 TNRWLSEDKQMQLLLNVGGPDRVSRVQMAE--------------VDRGVQSPADISMDITKLVQTLNIDP-VTYKDGVKL 293 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~--------------~~~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~ 293 (300)
++++... .+|+++++-+|+.|+++ ......++.....|+.++++.|||.| .+|+++|..
T Consensus 252 m~s~~~~------pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~LgW~Pkv~L~egL~~ 325 (350)
T KOG1429|consen 252 MESDYRG------PVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQLGWEPKVSLREGLPL 325 (350)
T ss_pred hcCCCcC------CcccCCccceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHHhCCCCCCcHHHhhHH
Confidence 9996654 59999999999999999 22344566677889999999999999 999999999
Q ss_pred HHhhhc
Q 022280 294 TLAAEA 299 (300)
Q Consensus 294 ~~~~~~ 299 (300)
++.||-
T Consensus 326 t~~~fr 331 (350)
T KOG1429|consen 326 TVTYFR 331 (350)
T ss_pred HHHHHH
Confidence 998873
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=282.90 Aligned_cols=260 Identities=29% Similarity=0.454 Sum_probs=212.3
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEcc
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCA 84 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a 84 (300)
+|||||||||||+++++.|+++| ++|+++.|+ .+|+.+++++...++.. ++|+|||+|
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~r~------------------~~d~~~~~~~~~~~~~~-~~d~vi~~a 58 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALTSS------------------QLDLTDPEALERLLRAI-RPDAVVNTA 58 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeCCc------------------ccCCCCHHHHHHHHHhC-CCCEEEECC
Confidence 58999999999999999999999 899988874 47899998888888764 689999999
Q ss_pred cccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHHHH
Q 022280 85 ALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFIY 163 (300)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~~~ 163 (300)
+.........++...+++|+.++. ++++++++.+. ++|++||.++|+.... +++|+++++|.+.|+.+|..+|++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~-~~v~~Ss~~vy~~~~~~~~~E~~~~~~~~~Y~~~K~~~E~~~~ 136 (287)
T TIGR01214 59 AYTDVDGAESDPEKAFAVNALAPQ-NLARAAARHGA-RLVHISTDYVFDGEGKRPYREDDATNPLNVYGQSKLAGEQAIR 136 (287)
T ss_pred ccccccccccCHHHHHHHHHHHHH-HHHHHHHHcCC-eEEEEeeeeeecCCCCCCCCCCCCCCCcchhhHHHHHHHHHHH
Confidence 976544344467788999999996 99999988776 8999999999987544 89999999999999999999999999
Q ss_pred HHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccccccccccee
Q 022280 164 EKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243 (300)
Q Consensus 164 ~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ 243 (300)
.++.+++++||+++||++.. ..+...++.. +..++++.+.+++.++|+|++|+|+++..+++.+...+ ++|
T Consensus 137 ~~~~~~~ilR~~~v~G~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~----~~~ 207 (287)
T TIGR01214 137 AAGPNALIVRTSWLYGGGGG----RNFVRTMLRL-AGRGEELRVVDDQIGSPTYAKDLARVIAALLQRLARAR----GVY 207 (287)
T ss_pred HhCCCeEEEEeeecccCCCC----CCHHHHHHHH-hhcCCCceEecCCCcCCcCHHHHHHHHHHHHhhccCCC----CeE
Confidence 98889999999999999742 2223333333 33556777777778899999999999999998753222 389
Q ss_pred eecCCCccCHHHHHHh-----hcc--------------------CCCCCccccChHHHHHhcCCCcCCHHHHHHHHHhh
Q 022280 244 NVGGPDRVSRVQMAEV-----DRG--------------------VQSPADISMDITKLVQTLNIDPVTYKDGVKLTLAA 297 (300)
Q Consensus 244 ni~~~~~~s~~e~~~~-----~~~--------------------~~~~~~~~~~~~k~~~~lg~~p~~~~~~l~~~~~~ 297 (300)
|+++++.+|+.|+++. ... ...+....+|++|++++|||++++++++|++++++
T Consensus 208 ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~~~~~~~~~l~~~~~~ 286 (287)
T TIGR01214 208 HLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGTPLPHWREALRAYLQE 286 (287)
T ss_pred EEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCCCCccHHHHHHHHHhh
Confidence 9999999999998881 000 01123457999999999999669999999999864
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=314.39 Aligned_cols=285 Identities=19% Similarity=0.256 Sum_probs=220.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC--Cchhhhhhc-CCCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST--PLPQLLLDA-LPHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~--~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
++|+|||||||||||++|+++|+++|+. ++|++++|.. +....+... ...+++++.+|++|++.+..++... ++|
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~-~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~D 82 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPD-YKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITE-GID 82 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCC-CEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhc-CCC
Confidence 4689999999999999999999998533 8899888752 112222111 1246788999999988777665433 899
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccccccCCCC----CCCCCCCCCCCChhHH
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGVKS----FYKEEDEIAPVNVYGK 153 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~----~~~E~~~~~p~~~Y~~ 153 (300)
+|||+|+......+..++...+++|+.++. +++++|++.+ +++|||+||..+||.... ..+|+++..|.+.|+.
T Consensus 83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~-~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~ 161 (668)
T PLN02260 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTH-VLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSA 161 (668)
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHH-HHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHH
Confidence 999999987655444567788899999996 9999999877 789999999999998654 2367777788999999
Q ss_pred HHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHH
Q 022280 154 SKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILA 227 (300)
Q Consensus 154 sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~ 227 (300)
+|..+|.+++.+ +.+++++||++||||+.. +..+...++..+. .++++.++|+ +.++|+|++|+|+++..
T Consensus 162 sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~---~~~~i~~~~~~a~-~g~~i~i~g~g~~~r~~ihV~Dva~a~~~ 237 (668)
T PLN02260 162 TKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQF---PEKLIPKFILLAM-QGKPLPIHGDGSNVRSYLYCEDVAEAFEV 237 (668)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECcccccCcCCC---cccHHHHHHHHHh-CCCCeEEecCCCceEeeEEHHHHHHHHHH
Confidence 999999999865 347899999999999863 2233444444444 5667777654 67999999999999999
Q ss_pred HHhccccccccccceeeecCCCccCHHHHHH-----hhc-----------cCCCCCccccChHHHHHhcCCCc-CCHHHH
Q 022280 228 LTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDR-----------GVQSPADISMDITKLVQTLNIDP-VTYKDG 290 (300)
Q Consensus 228 ~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~-----------~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~ 290 (300)
++++...+ ++||+++++.+|+.|+++ ... .......+.+|++|++ +|||+| ++++++
T Consensus 238 ~l~~~~~~-----~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~-~lGw~p~~~~~eg 311 (668)
T PLN02260 238 VLHKGEVG-----HVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLK-KLGWQERTSWEEG 311 (668)
T ss_pred HHhcCCCC-----CEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHH-HcCCCCCCCHHHH
Confidence 99764322 399999999999999988 110 0111223458999996 699999 899999
Q ss_pred HHHHHhhhc
Q 022280 291 VKLTLAAEA 299 (300)
Q Consensus 291 l~~~~~~~~ 299 (300)
|+++++||.
T Consensus 312 l~~~i~w~~ 320 (668)
T PLN02260 312 LKKTMEWYT 320 (668)
T ss_pred HHHHHHHHH
Confidence 999999985
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=284.17 Aligned_cols=283 Identities=23% Similarity=0.330 Sum_probs=218.4
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC--chhhhhhc-CCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP--LPQLLLDA-LPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~--~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+|||||||||||++++++|+++|.. ++|++..|... ....+... ....+.++.+|++|++++.++++.+ ++|+||
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~vi 78 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD-AEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEH-QPDAVV 78 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC-CEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhc-CCCEEE
Confidence 5899999999999999999998743 67888776321 11111111 1235677899999999998888855 699999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEeeccccccCCCC--CCCCCCCCCCCChhHHHHHHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLSTDQVYEGVKS--FYKEEDEIAPVNVYGKSKVAA 158 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~--~~~E~~~~~p~~~Y~~sK~~~ 158 (300)
|+|+......+...+...+++|+.++. +++++|.+.+.+ ++|++||..+|+.... +++|+++..|.+.|+.+|..+
T Consensus 79 ~~a~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 157 (317)
T TIGR01181 79 HFAAESHVDRSISGPAAFIETNVVGTY-TLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAAS 157 (317)
T ss_pred EcccccCchhhhhCHHHHHHHHHHHHH-HHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCCCCchHHHHHHH
Confidence 999976554445567788999999996 999999886544 8999999999997654 688998888899999999999
Q ss_pred HHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHhcc
Q 022280 159 EKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 159 e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
|.+++.+ +.+++++||+.+|||+... ..+...++.... .++++.++++ +.++|+|++|+++++..++++.
T Consensus 158 e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~---~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~ 233 (317)
T TIGR01181 158 DHLVRAYHRTYGLPALITRCSNNYGPYQFP---EKLIPLMITNAL-AGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKG 233 (317)
T ss_pred HHHHHHHHHHhCCCeEEEEeccccCCCCCc---ccHHHHHHHHHh-cCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCC
Confidence 9988754 4578999999999997532 233444555544 5556666554 5789999999999999999864
Q ss_pred ccccccccceeeecCCCccCHHHHHH-----hhc----------cCCCCCccccChHHHHHhcCCCc-CCHHHHHHHHHh
Q 022280 233 LSEDKQMQLLLNVGGPDRVSRVQMAE-----VDR----------GVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLA 296 (300)
Q Consensus 233 ~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~----------~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~ 296 (300)
.. +++||+++++.+++.|+++ ... .......+.+|++|++++|||+| ++++++|+++++
T Consensus 234 ~~-----~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~ 308 (317)
T TIGR01181 234 RV-----GETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFEEGLRKTVQ 308 (317)
T ss_pred CC-----CceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 32 2389999999999999998 110 00011223589999999999999 899999999999
Q ss_pred hhc
Q 022280 297 AEA 299 (300)
Q Consensus 297 ~~~ 299 (300)
||.
T Consensus 309 ~~~ 311 (317)
T TIGR01181 309 WYL 311 (317)
T ss_pred HHH
Confidence 874
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=285.21 Aligned_cols=276 Identities=19% Similarity=0.172 Sum_probs=207.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh-----cCCCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD-----ALPHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~-----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
+|+|||||||||||++|+++|+++| ++|+++.|+......... ...+.+.++++|++|++.+..+++ ++
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 77 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRG---YTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD---GC 77 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCC---CEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc---CC
Confidence 5899999999999999999999999 899998887543221111 112467889999999988888877 89
Q ss_pred CEEEEcccccCccccccChh-hhhhcccccchHHHHHhhhhc-cCCeEEEeeccc--cccCCC----CCCCCCCCCCC--
Q 022280 78 DVVVNCAALSVPRVCENDPD-SAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQ--VYEGVK----SFYKEEDEIAP-- 147 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~-~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~--~~~~~~----~~~~E~~~~~p-- 147 (300)
|+|||+|+.... ...++. ..+++|+.++. +++++|.+. ++++||++||.+ +|+... .+++|+.+..|
T Consensus 78 d~Vih~A~~~~~--~~~~~~~~~~~~nv~gt~-~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~ 154 (322)
T PLN02662 78 EGVFHTASPFYH--DVTDPQAELIDPAVKGTL-NVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAF 154 (322)
T ss_pred CEEEEeCCcccC--CCCChHHHHHHHHHHHHH-HHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhH
Confidence 999999997532 223454 78899999997 999999887 889999999976 465421 26788776555
Q ss_pred ----CChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 148 ----VNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 148 ----~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
.+.|+.+|..+|++++.+ +.+++++||+++|||+.... ......++..++. +.. ..+++.++|+|++
T Consensus 155 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~--~~~~~~~~~~~~~-~~~--~~~~~~~~~i~v~ 229 (322)
T PLN02662 155 CEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPT--LNTSAEAILNLIN-GAQ--TFPNASYRWVDVR 229 (322)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCC--CCchHHHHHHHhc-CCc--cCCCCCcCeEEHH
Confidence 258999999999988654 45889999999999975321 1222334445443 332 2345679999999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhhc--------c------CCCCCccccChHHHHHhcCCCcC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDR--------G------VQSPADISMDITKLVQTLNIDPV 285 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~--------~------~~~~~~~~~~~~k~~~~lg~~p~ 285 (300)
|+|++++.+++++...+ .||++ ++.+|++|+++... . ........+|++|+++ |||+++
T Consensus 230 Dva~a~~~~~~~~~~~~-----~~~~~-g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lg~~~~ 302 (322)
T PLN02662 230 DVANAHIQAFEIPSASG-----RYCLV-ERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEKAKS-LGIEFI 302 (322)
T ss_pred HHHHHHHHHhcCcCcCC-----cEEEe-CCCCCHHHHHHHHHHHCCCCCCCCCCCCccccccccccChHHHHH-hCCccc
Confidence 99999999998754333 68886 47899999988110 0 0112345689999975 999999
Q ss_pred CHHHHHHHHHhhhc
Q 022280 286 TYKDGVKLTLAAEA 299 (300)
Q Consensus 286 ~~~~~l~~~~~~~~ 299 (300)
+++++|+++++|+.
T Consensus 303 ~~~~~l~~~~~~~~ 316 (322)
T PLN02662 303 PLEVSLKDTVESLK 316 (322)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999999985
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=285.84 Aligned_cols=280 Identities=20% Similarity=0.212 Sum_probs=203.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh--hcCC--CceeEEEeecCCchhHHHHHHhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL--DALP--HSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~--~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|++|+||||||+||||++|+++|+++| ++|+++.|+.+...... ..+. ..+.++.+|++|++++...++ +
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~ 80 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKG---YAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIA---G 80 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCC---CEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHh---c
Confidence 357899999999999999999999999 89988888754432211 1111 247788999999988877776 8
Q ss_pred CCEEEEcccccCccccccCh-hhhhhcccccchHHHHHhhhhc-cCCeEEEeeccccccCCC-----CCCCCCC------
Q 022280 77 PDVVVNCAALSVPRVCENDP-DSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQVYEGVK-----SFYKEED------ 143 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~-~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~-----~~~~E~~------ 143 (300)
+|+|||+|+.... ...++ ...+++|+.++. ++++++.+. ++++||++||.++|+... .+++|+.
T Consensus 81 ~d~vih~A~~~~~--~~~~~~~~~~~~nv~g~~-~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~ 157 (338)
T PLN00198 81 CDLVFHVATPVNF--ASEDPENDMIKPAIQGVH-NVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEF 157 (338)
T ss_pred CCEEEEeCCCCcc--CCCChHHHHHHHHHHHHH-HHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhh
Confidence 9999999996432 11233 356799999996 999999875 588999999999998532 2456642
Q ss_pred ---CCCCCChhHHHHHHHHHHHHHHc----CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc-------
Q 022280 144 ---EIAPVNVYGKSKVAAEKFIYEKC----SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH------- 209 (300)
Q Consensus 144 ---~~~p~~~Y~~sK~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 209 (300)
+..|.++|+.||.++|.+++.++ .+++++||++||||+.....+.. . .++...+ .++.+.+.|
T Consensus 158 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~-~-~~~~~~~-~~~~~~~~g~~~~~~~ 234 (338)
T PLN00198 158 LTSEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSS-L-SLAMSLI-TGNEFLINGLKGMQML 234 (338)
T ss_pred hhhcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCc-H-HHHHHHH-cCCccccccccccccc
Confidence 23467889999999999888754 47899999999999854322222 1 2233333 444444443
Q ss_pred CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhh-----c-----cCCC---CCccccChHHH
Q 022280 210 DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD-----R-----GVQS---PADISMDITKL 276 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~-----~-----~~~~---~~~~~~~~~k~ 276 (300)
++.++|+||+|+|++++.+++.+...+ .|+ +++..+|+.|+++.. . .... .....+|++|+
T Consensus 235 ~~~~~~i~V~D~a~a~~~~~~~~~~~~-----~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 308 (338)
T PLN00198 235 SGSISITHVEDVCRAHIFLAEKESASG-----RYI-CCAANTSVPELAKFLIKRYPQYQVPTDFGDFPSKAKLIISSEKL 308 (338)
T ss_pred cCCcceeEHHHHHHHHHHHhhCcCcCC-----cEE-EecCCCCHHHHHHHHHHHCCCCCCCccccccCCCCccccChHHH
Confidence 124799999999999999998753332 574 556778999998811 0 0000 12346799999
Q ss_pred HHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 277 VQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 277 ~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
++ +||+| ++++++|+++++||.
T Consensus 309 ~~-~G~~p~~~l~~gi~~~~~~~~ 331 (338)
T PLN00198 309 IS-EGFSFEYGIEEIYDQTVEYFK 331 (338)
T ss_pred Hh-CCceecCcHHHHHHHHHHHHH
Confidence 77 69999 899999999999985
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=286.76 Aligned_cols=280 Identities=18% Similarity=0.196 Sum_probs=201.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc--C---CCceeEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA--L---PHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~--~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
..|+|||||||||||++|+++|+++| ++|++++|+.+....+... . ...+.++.+|++|++.+.++++ +
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~---~ 77 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG---YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR---G 77 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC---CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh---C
Confidence 35799999999999999999999999 8999988876544332211 1 1247788999999988888876 7
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccccccCCCC--C-CCCCCC--------
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGVKS--F-YKEEDE-------- 144 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~--~-~~E~~~-------- 144 (300)
+|+|||+|+..... ........+++|+.|+. +++++|.+.+ +++|||+||..+|+.... + ++|++.
T Consensus 78 ~d~ViH~A~~~~~~-~~~~~~~~~~~Nv~gt~-~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~ 155 (351)
T PLN02650 78 CTGVFHVATPMDFE-SKDPENEVIKPTVNGML-SIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRR 155 (351)
T ss_pred CCEEEEeCCCCCCC-CCCchhhhhhHHHHHHH-HHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhc
Confidence 99999999865422 11223468899999997 9999999876 789999999987765432 3 566642
Q ss_pred -CCCCChhHHHHHHHHHHHHHHc----CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 145 -IAPVNVYGKSKVAAEKFIYEKC----SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 145 -~~p~~~Y~~sK~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
..|.++|+.||.++|.+++.++ .+++++||+++|||+.....+..+... + ... .+........+.++|+|++
T Consensus 156 ~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~r~~v~V~ 232 (351)
T PLN02650 156 KKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITA-L-SLI-TGNEAHYSIIKQGQFVHLD 232 (351)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHH-H-HHh-cCCccccCcCCCcceeeHH
Confidence 2345689999999999887654 578999999999997643222222111 1 112 2222111122458999999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhhc----------c----CCCCCccccChHHHHHhcCCCc-
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDR----------G----VQSPADISMDITKLVQTLNIDP- 284 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~----------~----~~~~~~~~~~~~k~~~~lg~~p- 284 (300)
|+|++++.+++++...+ .| +++++.+|+.|+++... . ........+|++|+ ++|||+|
T Consensus 233 Dva~a~~~~l~~~~~~~-----~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~-~~lG~~p~ 305 (351)
T PLN02650 233 DLCNAHIFLFEHPAAEG-----RY-ICSSHDATIHDLAKMLREKYPEYNIPARFPGIDEDLKSVEFSSKKL-TDLGFTFK 305 (351)
T ss_pred HHHHHHHHHhcCcCcCc-----eE-EecCCCcCHHHHHHHHHHhCcccCCCCCCCCcCcccccccCChHHH-HHhCCCCC
Confidence 99999999998754332 67 55667899999998110 0 00112335688997 5799999
Q ss_pred CCHHHHHHHHHhhhc
Q 022280 285 VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 ~~~~~~l~~~~~~~~ 299 (300)
++++++|+++++|+.
T Consensus 306 ~~l~egl~~~i~~~~ 320 (351)
T PLN02650 306 YSLEDMFDGAIETCR 320 (351)
T ss_pred CCHHHHHHHHHHHHH
Confidence 799999999999974
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=281.35 Aligned_cols=272 Identities=24% Similarity=0.295 Sum_probs=196.8
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh------cCCCCE
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK------FGQPDV 79 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~------~~~~d~ 79 (300)
|||||||||||++|+++|+++| ++++++.|+....... ..+.++|+.|..+.+..++. ++++|+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~ 71 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILVVDNLKDGTKF-------VNLVDLDIADYMDKEDFLAQIMAGDDFGDIEA 71 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEEecCCCcchHH-------HhhhhhhhhhhhhHHHHHHHHhcccccCCccE
Confidence 8999999999999999999999 7766666654322111 01234566654433333322 237999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAA 158 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~ 158 (300)
|||+|+..... ...++..++.|+.++. +++++|++.++ +|||+||..+|+.... +++|+++..|.+.|+.||.++
T Consensus 72 Vih~A~~~~~~--~~~~~~~~~~n~~~t~-~ll~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 147 (308)
T PRK11150 72 IFHEGACSSTT--EWDGKYMMDNNYQYSK-ELLHYCLEREI-PFLYASSAATYGGRTDDFIEEREYEKPLNVYGYSKFLF 147 (308)
T ss_pred EEECceecCCc--CCChHHHHHHHHHHHH-HHHHHHHHcCC-cEEEEcchHHhCcCCCCCCccCCCCCCCCHHHHHHHHH
Confidence 99999865432 1245567899999996 99999999887 7999999999997644 678888888999999999999
Q ss_pred HHHHHHHc----CCceeEeeeeeeCCCCCCCCC-CCchHHHHHHHHhcCCceeec-cC--cccCceeHHHHHHHHHHHHh
Q 022280 159 EKFIYEKC----SNFAILRSSIIYGPQTISPVP-KSLPIQWIDSVLSKGEKVEFF-HD--ECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 159 e~~~~~~~----~~~~ilR~~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~i~v~D~a~~~~~~~~ 230 (300)
|+++++++ .+++++||+++|||+...... ..... ++...+.+++.+.++ |+ ..|+|+|++|+|++++.+++
T Consensus 148 E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~ 226 (308)
T PRK11150 148 DEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAF-HLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWE 226 (308)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHH-HHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHh
Confidence 99988763 478999999999998642111 11111 222233345544444 43 47999999999999999987
Q ss_pred ccccccccccceeeecCCCccCHHHHHH-----hhcc--C--CCC--------CccccChHHHHHhcCCCc-C-CHHHHH
Q 022280 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRG--V--QSP--------ADISMDITKLVQTLNIDP-V-TYKDGV 291 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~--~--~~~--------~~~~~~~~k~~~~lg~~p-~-~~~~~l 291 (300)
... .++||+++++.+|+.|+++ .... . ..+ ....+|++|+++ +||+| . +++++|
T Consensus 227 ~~~------~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-~g~~p~~~~~~~gl 299 (308)
T PRK11150 227 NGV------SGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDKLKGRYQAFTQADLTKLRA-AGYDKPFKTVAEGV 299 (308)
T ss_pred cCC------CCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccccccccceecccCHHHHHh-cCCCCCCCCHHHHH
Confidence 632 2389999999999999998 1100 0 001 123579999975 79998 4 999999
Q ss_pred HHHHhhhc
Q 022280 292 KLTLAAEA 299 (300)
Q Consensus 292 ~~~~~~~~ 299 (300)
+++++|+-
T Consensus 300 ~~~~~~~~ 307 (308)
T PRK11150 300 AEYMAWLN 307 (308)
T ss_pred HHHHHHhh
Confidence 99999974
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=282.51 Aligned_cols=265 Identities=21% Similarity=0.235 Sum_probs=202.2
Q ss_pred EEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEcccc
Q 022280 7 LVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAAL 86 (300)
Q Consensus 7 lItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a~~ 86 (300)
||||||||||++|++.|+++| ++|++..++ .++|++|.+++..+++.. ++|+|||||+.
T Consensus 1 lItGa~GfiG~~l~~~L~~~g---~~v~~~~~~-----------------~~~Dl~~~~~l~~~~~~~-~~d~Vih~A~~ 59 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALG---FTNLVLRTH-----------------KELDLTRQADVEAFFAKE-KPTYVILAAAK 59 (306)
T ss_pred CcccCCCcccHHHHHHHHhCC---CcEEEeecc-----------------ccCCCCCHHHHHHHHhcc-CCCEEEEeeee
Confidence 699999999999999999999 676655332 368999999888888765 79999999998
Q ss_pred cCc-cccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCC----CCCCCC-hhHHHHHHHH
Q 022280 87 SVP-RVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEED----EIAPVN-VYGKSKVAAE 159 (300)
Q Consensus 87 ~~~-~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~----~~~p~~-~Y~~sK~~~e 159 (300)
... .....++...++.|+.++. +++++|++.+++++|++||..+|++... +++|++ +..|.+ .|+.||.++|
T Consensus 60 ~~~~~~~~~~~~~~~~~n~~~~~-~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~e 138 (306)
T PLN02725 60 VGGIHANMTYPADFIRENLQIQT-NVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGI 138 (306)
T ss_pred ecccchhhhCcHHHHHHHhHHHH-HHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHHHH
Confidence 643 2233467788999999996 9999999999999999999999997544 889986 444544 5999999999
Q ss_pred HHHHHH----cCCceeEeeeeeeCCCCCC-CCCCCchHHHHHHH---HhcCCceee-cc--CcccCceeHHHHHHHHHHH
Q 022280 160 KFIYEK----CSNFAILRSSIIYGPQTIS-PVPKSLPIQWIDSV---LSKGEKVEF-FH--DECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 160 ~~~~~~----~~~~~ilR~~~v~G~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~-~~--~~~~~~i~v~D~a~~~~~~ 228 (300)
++++.+ ..+++++||+.+|||+... +....+...++... ...+.++.+ ++ ++.++|+|++|++++++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~ 218 (306)
T PLN02725 139 KMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFL 218 (306)
T ss_pred HHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHH
Confidence 887654 4578999999999998532 11122233333322 224455444 44 4678999999999999999
Q ss_pred HhccccccccccceeeecCCCccCHHHHHHhh-----c---------cCCCCCccccChHHHHHhcCCCc-CCHHHHHHH
Q 022280 229 TNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD-----R---------GVQSPADISMDITKLVQTLNIDP-VTYKDGVKL 293 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~-----~---------~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~ 293 (300)
+++.... +.||+++++.+|+.|+++.. . .........+|++|++ .|||+| ++++++|++
T Consensus 219 ~~~~~~~-----~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~~~~~l~~ 292 (306)
T PLN02725 219 MRRYSGA-----EHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLR-SLGWDPKFSLKDGLQE 292 (306)
T ss_pred HhccccC-----cceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHHHHH-HhCCCCCCCHHHHHHH
Confidence 9874322 27899999999999998811 0 0111224468999996 599999 899999999
Q ss_pred HHhhhc
Q 022280 294 TLAAEA 299 (300)
Q Consensus 294 ~~~~~~ 299 (300)
+++|+.
T Consensus 293 ~~~~~~ 298 (306)
T PLN02725 293 TYKWYL 298 (306)
T ss_pred HHHHHH
Confidence 999875
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=280.04 Aligned_cols=276 Identities=19% Similarity=0.206 Sum_probs=205.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc-----CCCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA-----LPHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
+++|||||||||||++++++|+++| ++|+++.|+.......... ....+.++++|++|++++..+++ ++
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 78 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRG---YTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE---GC 78 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh---CC
Confidence 5899999999999999999999999 8999888876543322111 12467889999999998888877 79
Q ss_pred CEEEEcccccCccccccCh-hhhhhcccccchHHHHHhhhhc-cCCeEEEeeccccc--cCCC----CCCCCCCCCC---
Q 022280 78 DVVVNCAALSVPRVCENDP-DSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQVY--EGVK----SFYKEEDEIA--- 146 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~-~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~~~--~~~~----~~~~E~~~~~--- 146 (300)
|+|||+|+..... ..++ ...+++|+.|+. +++++|++. +++|||++||.++| +... .+++|+++..
T Consensus 79 d~vih~A~~~~~~--~~~~~~~~~~~nv~gt~-~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~ 155 (322)
T PLN02986 79 DAVFHTASPVFFT--VKDPQTELIDPALKGTI-NVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSL 155 (322)
T ss_pred CEEEEeCCCcCCC--CCCchhhhhHHHHHHHH-HHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHH
Confidence 9999999975332 1233 356899999997 999999885 78999999998764 3321 2578877643
Q ss_pred ---CCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 ---PVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 ---p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
+.+.|+.||..+|.+++.+ +.+++++||+++|||..... ......++...+ .++.+ .+.+.++|+|++
T Consensus 156 ~~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~--~~~~~~~~~~~~-~g~~~--~~~~~~~~v~v~ 230 (322)
T PLN02986 156 CRETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPT--LNFSVELIVDFI-NGKNL--FNNRFYRFVDVR 230 (322)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCC--CCccHHHHHHHH-cCCCC--CCCcCcceeEHH
Confidence 3578999999999988765 45789999999999975321 111223444444 33332 456678999999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhhc----c--------CCCCCcc--ccChHHHHHhcCCCcC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDR----G--------VQSPADI--SMDITKLVQTLNIDPV 285 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~----~--------~~~~~~~--~~~~~k~~~~lg~~p~ 285 (300)
|+|++++.+++++...+ .||++ ++.+|+.|+++... . ....... .+|++|++ .|||+|+
T Consensus 231 Dva~a~~~al~~~~~~~-----~yni~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~lg~~~~ 303 (322)
T PLN02986 231 DVALAHIKALETPSANG-----RYIID-GPIMSVNDIIDILRELFPDLCIADTNEESEMNEMICKVCVEKVK-NLGVEFT 303 (322)
T ss_pred HHHHHHHHHhcCcccCC-----cEEEe-cCCCCHHHHHHHHHHHCCCCCCCCCCccccccccCCccCHHHHH-HcCCccc
Confidence 99999999999864432 79995 56899999998110 0 0011112 37999995 5999999
Q ss_pred CHHHHHHHHHhhhc
Q 022280 286 TYKDGVKLTLAAEA 299 (300)
Q Consensus 286 ~~~~~l~~~~~~~~ 299 (300)
+++++|+++++|+.
T Consensus 304 ~l~e~~~~~~~~~~ 317 (322)
T PLN02986 304 PMKSSLRDTILSLK 317 (322)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999874
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=276.15 Aligned_cols=278 Identities=27% Similarity=0.347 Sum_probs=219.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCC-CEEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQP-DVVVN 82 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-d~vih 82 (300)
|+|||||||||||++|+++|+++| ++|++++|+........ ..+.++.+|+++.+......+ .. |+|||
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~---~~~d~vih 70 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAG---HDVRGLDRLRDGLDPLL----SGVEFVVLDLTDRDLVDELAK---GVPDAVIH 70 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCC---CeEEEEeCCCccccccc----cccceeeecccchHHHHHHHh---cCCCEEEE
Confidence 459999999999999999999999 89999999866544332 356678999999876666666 44 99999
Q ss_pred cccccCcccccc-ChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCC-CC-CCCCC-CCCCCCChhHHHHHHH
Q 022280 83 CAALSVPRVCEN-DPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV-KS-FYKEE-DEIAPVNVYGKSKVAA 158 (300)
Q Consensus 83 ~a~~~~~~~~~~-~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~-~~-~~~E~-~~~~p~~~Y~~sK~~~ 158 (300)
+|+......... ++...+++|+.++. +++++|++.++++|||.||..+|+.. .. +++|+ .+..|.++|+.||..+
T Consensus 71 ~aa~~~~~~~~~~~~~~~~~~nv~gt~-~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~~~ 149 (314)
T COG0451 71 LAAQSSVPDSNASDPAEFLDVNVDGTL-NLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAA 149 (314)
T ss_pred ccccCchhhhhhhCHHHHHHHHHHHHH-HHHHHHHHcCCCeEEEeCCCceECCCCCCCCcccccCCCCCCCHHHHHHHHH
Confidence 999876543332 45678999999996 99999999999999998887877765 22 78898 6778888999999999
Q ss_pred HHHHHHHc----CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCc-eeeccC--cccCceeHHHHHHHHHHHHhc
Q 022280 159 EKFIYEKC----SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK-VEFFHD--ECRCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 159 e~~~~~~~----~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~i~v~D~a~~~~~~~~~ 231 (300)
|++++.+. .+++++||+++|||+.....+..+...++.... .+.+ +.+.++ ..++++|++|++++++.++++
T Consensus 150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 228 (314)
T COG0451 150 EQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLL-KGEPIIVIGGDGSQTRDFVYVDDVADALLLALEN 228 (314)
T ss_pred HHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHH-hCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhC
Confidence 99998876 589999999999999765544444444444444 3443 455443 568999999999999999998
Q ss_pred cccccccccceeeecCCC-ccCHHHHHHhh-----c------------cCCCCCccccChHHHHHhcCCCc-CCHHHHHH
Q 022280 232 WLSEDKQMQLLLNVGGPD-RVSRVQMAEVD-----R------------GVQSPADISMDITKLVQTLNIDP-VTYKDGVK 292 (300)
Q Consensus 232 ~~~~~~~~~~i~ni~~~~-~~s~~e~~~~~-----~------------~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~ 292 (300)
+... +||++++. .++++|+++.. . .........+|..|+++.|||.| .++++++.
T Consensus 229 ~~~~------~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~ 302 (314)
T COG0451 229 PDGG------VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEGLA 302 (314)
T ss_pred CCCc------EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCCCCCCHHHHHH
Confidence 5433 79999997 89999998811 0 11112356789999999999999 89999999
Q ss_pred HHHhhhc
Q 022280 293 LTLAAEA 299 (300)
Q Consensus 293 ~~~~~~~ 299 (300)
++++|+.
T Consensus 303 ~~~~~~~ 309 (314)
T COG0451 303 DTLEWLL 309 (314)
T ss_pred HHHHHHH
Confidence 9998864
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=267.69 Aligned_cols=280 Identities=19% Similarity=0.188 Sum_probs=210.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh--hhhcC---CCceeEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL--LLDAL---PHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~--~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
.+|+|+|||||||||+++++.|+.+| |+|+++.|+++.... .+..+ +++...+.+|++|++++..+++ +
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG---Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~---g 78 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG---YTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID---G 78 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC---CEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh---C
Confidence 35899999999999999999999999 999999999876333 22223 4567789999999999999988 9
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccccccCC------CCCCCCCCCCCCC-
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGV------KSFYKEEDEIAPV- 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~------~~~~~E~~~~~p~- 148 (300)
+|+|||+|.+..+.... ...+.++.++.|+. |++++|++.+ ++|+|++||.++.... ...++|+++..+.
T Consensus 79 cdgVfH~Asp~~~~~~~-~e~~li~pav~Gt~-nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~ 156 (327)
T KOG1502|consen 79 CDGVFHTASPVDFDLED-PEKELIDPAVKGTK-NVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDF 156 (327)
T ss_pred CCEEEEeCccCCCCCCC-cHHhhhhHHHHHHH-HHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHH
Confidence 99999999988765432 23378999999997 9999999976 9999999997754432 1268888764432
Q ss_pred -----ChhHHHHHHHHHHHHHHcC----CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 149 -----NVYGKSKVAAEKFIYEKCS----NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 149 -----~~Y~~sK~~~e~~~~~~~~----~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
.-|..||..+|+..++++. +.+++.|+.|+||......+.+. ..+.+.+ ++..-.. .+....|+||+
T Consensus 157 ~~~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~--~~~l~~i-~G~~~~~-~n~~~~~VdVr 232 (327)
T KOG1502|consen 157 CRCKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSL--NALLKLI-KGLAETY-PNFWLAFVDVR 232 (327)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhH--HHHHHHH-hcccccC-CCCceeeEeHH
Confidence 4799999999998888765 67899999999998654222221 2233444 3322222 22333499999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHh----------hccCCCC-----CccccChHHHHHhcCCCc
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV----------DRGVQSP-----ADISMDITKLVQTLNIDP 284 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~----------~~~~~~~-----~~~~~~~~k~~~~lg~~p 284 (300)
|+|.++++++|.+.+.|+ |.+.+ +..++.|+++. +...... ....++++|+++++||++
T Consensus 233 DVA~AHv~a~E~~~a~GR-----yic~~-~~~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~~k~k~lg~~~~ 306 (327)
T KOG1502|consen 233 DVALAHVLALEKPSAKGR-----YICVG-EVVSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSSEKLKSLGGFKF 306 (327)
T ss_pred HHHHHHHHHHcCcccCce-----EEEec-CcccHHHHHHHHHHhCCCCCCCCCCCccccccccccccccHHHHhccccee
Confidence 999999999999998886 66655 45568888881 1111111 112579999977666888
Q ss_pred CCHHHHHHHHHhhhc
Q 022280 285 VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 ~~~~~~l~~~~~~~~ 299 (300)
+++++.+.++++++.
T Consensus 307 ~~l~e~~~dt~~sl~ 321 (327)
T KOG1502|consen 307 RPLEETLSDTVESLR 321 (327)
T ss_pred cChHHHHHHHHHHHH
Confidence 999999999998763
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=278.33 Aligned_cols=281 Identities=19% Similarity=0.181 Sum_probs=199.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.|+||||||+||||++++++|+++| ++|++++|+.+....+...+ ...+.++++|+++.+.+.++++ ++|+|
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~V 83 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG---YTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVK---GCDGV 83 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHc---CCCEE
Confidence 5899999999999999999999999 89999888765444333322 2457788999999988887776 79999
Q ss_pred EEcccccCccc--cccChhhhh-----hcccccchHHHHHhhhhcc-CCeEEEeeccccccCCC------CCCCCCCCC-
Q 022280 81 VNCAALSVPRV--CENDPDSAM-----SINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGVK------SFYKEEDEI- 145 (300)
Q Consensus 81 ih~a~~~~~~~--~~~~~~~~~-----~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~------~~~~E~~~~- 145 (300)
||+|+...... ...++...+ +.|+.+++ +++++|.+.+ +++||++||.++|+... .+++|+.+.
T Consensus 84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p 162 (353)
T PLN02896 84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTL-NVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTP 162 (353)
T ss_pred EECCccccCCccccccchhhhhhHHhHHHHHHHHH-HHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCc
Confidence 99999765432 223444443 44568886 9999998864 78999999999998532 256776321
Q ss_pred --------CCCChhHHHHHHHHHHHHHHc----CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC-ceeecc-C-
Q 022280 146 --------APVNVYGKSKVAAEKFIYEKC----SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE-KVEFFH-D- 210 (300)
Q Consensus 146 --------~p~~~Y~~sK~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~- 210 (300)
.+.++|+.||.++|++++.++ .+++++||++||||+.....+. ....+. ..+.+.. .....+ .
T Consensus 163 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~-~~~~~~-~~~~g~~~~~~~~~~~~ 240 (353)
T PLN02896 163 IDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPS-SIQVLL-SPITGDSKLFSILSAVN 240 (353)
T ss_pred HHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCc-hHHHHH-HHhcCCccccccccccc
Confidence 234589999999999887764 4789999999999976432221 111111 1121211 111211 1
Q ss_pred ---cccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhh-----cc-C------CCC--CccccCh
Q 022280 211 ---ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD-----RG-V------QSP--ADISMDI 273 (300)
Q Consensus 211 ---~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~-----~~-~------~~~--~~~~~~~ 273 (300)
+.++|+|++|+|++++.+++.+...+ .|++ +++.+++.|+++.. .. . ... ....+|+
T Consensus 241 ~~~~~~dfi~v~Dva~a~~~~l~~~~~~~-----~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (353)
T PLN02896 241 SRMGSIALVHIEDICDAHIFLMEQTKAEG-----RYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSIPSEISS 314 (353)
T ss_pred cccCceeEEeHHHHHHHHHHHHhCCCcCc-----cEEe-cCCCCCHHHHHHHHHHhCCCCCccccccccccCccccccCH
Confidence 24699999999999999998743222 6765 56789999999811 00 0 000 1234688
Q ss_pred HHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 274 TKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 274 ~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
+|++ .|||+| ++++++|+++++|+.
T Consensus 315 ~~~~-~lGw~p~~~l~~~i~~~~~~~~ 340 (353)
T PLN02896 315 KKLR-DLGFEYKYGIEEIIDQTIDCCV 340 (353)
T ss_pred HHHH-HcCCCccCCHHHHHHHHHHHHH
Confidence 8885 599999 899999999999974
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=272.39 Aligned_cols=276 Identities=24% Similarity=0.328 Sum_probs=205.4
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH-hcCCCCEEEEc
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL-KFGQPDVVVNC 83 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~~~~d~vih~ 83 (300)
|||||||||||+++++.|+++| + +|++++|+.... .+. .+.. ..+..|+.+.+.++.+.+ .+.++|+||||
T Consensus 1 ilItGatG~iG~~l~~~L~~~g---~~~v~~~~~~~~~~-~~~-~~~~--~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~ 73 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERG---ITDILVVDNLRDGH-KFL-NLAD--LVIADYIDKEDFLDRLEKGAFGKIEAIFHQ 73 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcC---CceEEEEecCCCch-hhh-hhhh--eeeeccCcchhHHHHHHhhccCCCCEEEEC
Confidence 6999999999999999999999 5 688877654321 111 1111 235677887776666554 23489999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCC-CCCChhHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEI-APVNVYGKSKVAAEKFI 162 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~-~p~~~Y~~sK~~~e~~~ 162 (300)
|+.... ...++...+++|+.++. +++++|.+.++ +||++||..+|+....+++|++++ .|.+.|+.+|..+|.++
T Consensus 74 A~~~~~--~~~~~~~~~~~n~~~~~-~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~e~~~~~~p~~~Y~~sK~~~e~~~ 149 (314)
T TIGR02197 74 GACSDT--TETDGEYMMENNYQYSK-RLLDWCAEKGI-PFIYASSAATYGDGEAGFREGRELERPLNVYGYSKFLFDQYV 149 (314)
T ss_pred ccccCc--cccchHHHHHHHHHHHH-HHHHHHHHhCC-cEEEEccHHhcCCCCCCcccccCcCCCCCHHHHHHHHHHHHH
Confidence 997542 23467788899999996 99999999887 899999999999876677777654 58889999999999998
Q ss_pred HHH------cCCceeEeeeeeeCCCCCCCC-CCCchHHHHHHHHhcCCceeec--------cCcccCceeHHHHHHHHHH
Q 022280 163 YEK------CSNFAILRSSIIYGPQTISPV-PKSLPIQWIDSVLSKGEKVEFF--------HDECRCPVYVRDVVKIILA 227 (300)
Q Consensus 163 ~~~------~~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~v~D~a~~~~~ 227 (300)
+++ ..+++++|++++|||+..... ...+...++..+. .+.++.++ |++.++|+|++|+++++..
T Consensus 150 ~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~ 228 (314)
T TIGR02197 150 RRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIK-AGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLW 228 (314)
T ss_pred HHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHh-cCCCeEEecCccccCCCCceeeeEEHHHHHHHHHH
Confidence 764 236899999999999854211 1122333444444 44544443 2356899999999999999
Q ss_pred HHhccccccccccceeeecCCCccCHHHHHH-----hhcc--------CCC-----CCccccChHHHHHhcCCCc-CCHH
Q 022280 228 LTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRG--------VQS-----PADISMDITKLVQTLNIDP-VTYK 288 (300)
Q Consensus 228 ~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~--------~~~-----~~~~~~~~~k~~~~lg~~p-~~~~ 288 (300)
++++ . . .++||+++++.+|+.|+++ .... +.. .....+|++|++++|||+| ++++
T Consensus 229 ~~~~-~-~----~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~p~~~l~ 302 (314)
T TIGR02197 229 LLEN-G-V----SGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAGYYGPFTTLE 302 (314)
T ss_pred HHhc-c-c----CceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhcCCCCcccHH
Confidence 9987 2 2 2399999999999999998 1100 000 1124589999999999999 9999
Q ss_pred HHHHHHHhhhc
Q 022280 289 DGVKLTLAAEA 299 (300)
Q Consensus 289 ~~l~~~~~~~~ 299 (300)
++|+++++|+.
T Consensus 303 ~~l~~~~~~~~ 313 (314)
T TIGR02197 303 EGVKDYVQWLL 313 (314)
T ss_pred HHHHHHHHHHh
Confidence 99999999974
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=270.82 Aligned_cols=288 Identities=23% Similarity=0.282 Sum_probs=213.9
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC--CceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+||||||||+||+++++.|+++| ++|++.+|............. ..+.++.+|++++++++.+++.. ++|+|||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~d~vv~ 76 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEH-KIDAVIH 76 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhC-CCcEEEE
Confidence 58999999999999999999999 888887654322111111111 14667889999999988888754 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
+|+.........++...++.|+.++. +++++|.+.+++++|++||..+|+.... +++|+++..|.+.|+.+|..+|.+
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~~~~~~~~~y~~sK~~~e~~ 155 (328)
T TIGR01179 77 FAGLIAVGESVQDPLKYYRNNVVNTL-NLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSERI 155 (328)
T ss_pred CccccCcchhhcCchhhhhhhHHHHH-HHHHHHHhcCCCEEEEecchhhcCCCCCCCccccCCCCCCCchHHHHHHHHHH
Confidence 99976544444566778899999996 9999999988889999999999987654 789999988999999999999998
Q ss_pred HHHHc-----CCceeEeeeeeeCCCCCCC------CCCCchHHHHHHHHhcCCceeecc--------CcccCceeHHHHH
Q 022280 162 IYEKC-----SNFAILRSSIIYGPQTISP------VPKSLPIQWIDSVLSKGEKVEFFH--------DECRCPVYVRDVV 222 (300)
Q Consensus 162 ~~~~~-----~~~~ilR~~~v~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~v~D~a 222 (300)
++.++ .+++++||+.+||+..... ....+...+..........+..++ ++.++|+|++|++
T Consensus 156 ~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a 235 (328)
T TIGR01179 156 LRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLA 235 (328)
T ss_pred HHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHH
Confidence 88653 3689999999999863210 111122222222221333333322 3568999999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCccCHHHHHHh-----hc---------cCCCCCccccChHHHHHhcCCCc-CC-
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV-----DR---------GVQSPADISMDITKLVQTLNIDP-VT- 286 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~-----~~---------~~~~~~~~~~~~~k~~~~lg~~p-~~- 286 (300)
+++..+++..... ..+++||+++++.+|+.|+++. .. ..........|++|++++|||+| ++
T Consensus 236 ~~~~~~~~~~~~~--~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~ 313 (328)
T TIGR01179 236 DAHLAALEYLLNG--GESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASKIRRELGWQPKYTD 313 (328)
T ss_pred HHHHHHHhhhhcC--CCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCccccchhcchHHHHHHhCCCCCcch
Confidence 9999999763211 1134999999999999999991 00 00112234579999999999999 66
Q ss_pred HHHHHHHHHhhhc
Q 022280 287 YKDGVKLTLAAEA 299 (300)
Q Consensus 287 ~~~~l~~~~~~~~ 299 (300)
++++|+++++|+.
T Consensus 314 l~~~~~~~~~~~~ 326 (328)
T TIGR01179 314 LEIIIKTAWRWES 326 (328)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999974
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=262.82 Aligned_cols=273 Identities=20% Similarity=0.177 Sum_probs=210.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+||||||+||||+++++.|+++| ++|++++|+++....+. ...+.++++|++|.+++..+++ ++|+|||+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~---~~~~~~~~~D~~~~~~l~~~~~---~~d~vi~~ 71 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG---EEVRVLVRPTSDRRNLE---GLDVEIVEGDLRDPASLRKAVA---GCRALFHV 71 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC---CEEEEEEecCccccccc---cCCceEEEeeCCCHHHHHHHHh---CCCEEEEe
Confidence 589999999999999999999999 89999999865433221 2357778999999988887776 89999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC--CCCCCCCCCCC---CChhHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK--SFYKEEDEIAP---VNVYGKSKVAA 158 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~--~~~~E~~~~~p---~~~Y~~sK~~~ 158 (300)
|+.... ....+...++.|+.++. ++++++.+.+++++|++||..+|+... .+++|+.+..| ...|+.+|.+.
T Consensus 72 a~~~~~--~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~~~ 148 (328)
T TIGR03466 72 AADYRL--WAPDPEEMYAANVEGTR-NLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLA 148 (328)
T ss_pred ceeccc--CCCCHHHHHHHHHHHHH-HHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHHHH
Confidence 986432 23457788999999996 999999999999999999999998632 37888877665 45899999999
Q ss_pred HHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccc
Q 022280 159 EKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLS 234 (300)
Q Consensus 159 e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~ 234 (300)
|++++++ +.+++++||+++||++.....+ ...++...+.+. .....+...+|+|++|+|++++.+++++.
T Consensus 149 e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~i~v~D~a~a~~~~~~~~~- 222 (328)
T TIGR03466 149 EQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTP---TGRIIVDFLNGK--MPAYVDTGLNLVHVDDVAEGHLLALERGR- 222 (328)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCc---HHHHHHHHHcCC--CceeeCCCcceEEHHHHHHHHHHHHhCCC-
Confidence 9999875 3468999999999998642211 122344444222 22333455789999999999999998743
Q ss_pred ccccccceeeecCCCccCHHHHHHh-----hcc-------------------------CCCC-----------CccccCh
Q 022280 235 EDKQMQLLLNVGGPDRVSRVQMAEV-----DRG-------------------------VQSP-----------ADISMDI 273 (300)
Q Consensus 235 ~~~~~~~i~ni~~~~~~s~~e~~~~-----~~~-------------------------~~~~-----------~~~~~~~ 273 (300)
.+. .||++ ++.+|+.|+++. ... ...+ ....+|+
T Consensus 223 ~~~----~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 297 (328)
T TIGR03466 223 IGE----RYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSS 297 (328)
T ss_pred CCc----eEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCCh
Confidence 233 78885 678999999871 000 0011 2346799
Q ss_pred HHHHHhcCCCcCCHHHHHHHHHhhhc
Q 022280 274 TKLVQTLNIDPVTYKDGVKLTLAAEA 299 (300)
Q Consensus 274 ~k~~~~lg~~p~~~~~~l~~~~~~~~ 299 (300)
+|+++.|||+|++++++|++++.||.
T Consensus 298 ~k~~~~lg~~p~~~~~~i~~~~~~~~ 323 (328)
T TIGR03466 298 AKAVRELGYRQRPAREALRDAVEWFR 323 (328)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999985
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=256.32 Aligned_cols=239 Identities=23% Similarity=0.254 Sum_probs=181.4
Q ss_pred EEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh-hhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEccc
Q 022280 7 LVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ-LLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAA 85 (300)
Q Consensus 7 lItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a~ 85 (300)
|||||+||||++|+++|+++|+. ++|.++++++.... ..... .+...++++|++|++++.++++ ++|+|||+|+
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~-~~Vr~~d~~~~~~~~~~~~~-~~~~~~~~~Di~d~~~l~~a~~---g~d~V~H~Aa 75 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYI-YEVRVLDRSPPPKFLKDLQK-SGVKEYIQGDITDPESLEEALE---GVDVVFHTAA 75 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCc-eEEEEcccccccccchhhhc-ccceeEEEeccccHHHHHHHhc---CCceEEEeCc
Confidence 69999999999999999999964 68888888754332 11111 1233379999999999999888 8999999999
Q ss_pred ccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC--CC---CCCCCC--CCCCChhHHHHHHH
Q 022280 86 LSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK--SF---YKEEDE--IAPVNVYGKSKVAA 158 (300)
Q Consensus 86 ~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~--~~---~~E~~~--~~p~~~Y~~sK~~~ 158 (300)
+..... ...++..+++|+.||. +++++|++.++++|||+||.+++++.. .+ .+|+.+ ..+...|+.||..+
T Consensus 76 ~~~~~~-~~~~~~~~~vNV~GT~-nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~A 153 (280)
T PF01073_consen 76 PVPPWG-DYPPEEYYKVNVDGTR-NVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKALA 153 (280)
T ss_pred cccccC-cccHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHHHH
Confidence 875432 3456789999999995 999999999999999999999988722 23 245543 23567999999999
Q ss_pred HHHHHHHcC---------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHH
Q 022280 159 EKFIYEKCS---------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILA 227 (300)
Q Consensus 159 e~~~~~~~~---------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~ 227 (300)
|+++++... ..+++||+.||||++....+ .+.+..+.+......|+ ...+++||+|+|.++++
T Consensus 154 E~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~------~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvl 227 (280)
T PF01073_consen 154 EKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVP------RLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVL 227 (280)
T ss_pred HHHHHhhcccccccccceeEEEEeccEEeCcccccccc------hhhHHHHhcccceeecCCCceECcEeHHHHHHHHHH
Confidence 999987653 46899999999998754322 13333434534444443 57999999999999999
Q ss_pred HHhccccc---cccccceeeecCCCccC-HHHHHH
Q 022280 228 LTNRWLSE---DKQMQLLLNVGGPDRVS-RVQMAE 258 (300)
Q Consensus 228 ~~~~~~~~---~~~~~~i~ni~~~~~~s-~~e~~~ 258 (300)
+++..... ....++.|+|.+++++. +.|+..
T Consensus 228 A~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~ 262 (280)
T PF01073_consen 228 AAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMR 262 (280)
T ss_pred HHHHhccccccccCCCcEEEEECCCccCcHHHHHH
Confidence 88753322 22335599999999998 999874
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=262.03 Aligned_cols=262 Identities=19% Similarity=0.277 Sum_probs=197.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-CCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|++|+||||||+||||++++++|+++|.. ++|++.+|+......+.... ...+.++++|++|++++.++++ ++|+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~---~iD~ 77 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNP-KKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR---GVDY 77 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCC-cEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh---cCCE
Confidence 46789999999999999999999998632 57888888754433333222 2357788999999988888776 7999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAE 159 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e 159 (300)
|||+||......+..++...+++|+.|+. +++++|.+.++++||++||...+ .|.++|+.||.++|
T Consensus 78 Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~-~ll~aa~~~~~~~iV~~SS~~~~-------------~p~~~Y~~sK~~~E 143 (324)
T TIGR03589 78 VVHAAALKQVPAAEYNPFECIRTNINGAQ-NVIDAAIDNGVKRVVALSTDKAA-------------NPINLYGATKLASD 143 (324)
T ss_pred EEECcccCCCchhhcCHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEEeCCCCC-------------CCCCHHHHHHHHHH
Confidence 99999976544445567789999999997 99999999999999999996432 34678999999999
Q ss_pred HHHHHH-------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC-ceeecc-CcccCceeHHHHHHHHHHHHh
Q 022280 160 KFIYEK-------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE-KVEFFH-DECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 160 ~~~~~~-------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~v~D~a~~~~~~~~ 230 (300)
.+++.+ +.+++++||+++|||+. .+++.+. .....+. ++++.+ ++.|+|+|++|++++++.+++
T Consensus 144 ~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~------~~i~~~~-~~~~~~~~~~~i~~~~~~r~~i~v~D~a~a~~~al~ 216 (324)
T TIGR03589 144 KLFVAANNISGSKGTRFSVVRYGNVVGSRG------SVVPFFK-SLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLE 216 (324)
T ss_pred HHHHHHHhhccccCcEEEEEeecceeCCCC------CcHHHHH-HHHHhCCCCeeeCCCCceEeeEEHHHHHHHHHHHHh
Confidence 998653 34789999999999863 1333333 3333444 455553 467899999999999999998
Q ss_pred ccccccccccceeeecCCCccCHHHHHHh-------hccCCCC----CccccChHHHHHhcCCCc-CCHHHHHHH
Q 022280 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAEV-------DRGVQSP----ADISMDITKLVQTLNIDP-VTYKDGVKL 293 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~~~~s~~e~~~~-------~~~~~~~----~~~~~~~~k~~~~lg~~p-~~~~~~l~~ 293 (300)
+.. .++ +| +++++.+++.|+++. .....++ ....+|++|++++|||+| ++++++++.
T Consensus 217 ~~~-~~~----~~-~~~~~~~sv~el~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~l~~~~~~ 285 (324)
T TIGR03589 217 RML-GGE----IF-VPKIPSMKITDLAEAMAPECPHKIVGIRPGEKLHEVMITEDDARHTYELGDYYAILPSISF 285 (324)
T ss_pred hCC-CCC----EE-ccCCCcEEHHHHHHHHHhhCCeeEeCCCCCchhHhhhcChhhhhhhcCCCCeEEEcccccc
Confidence 742 233 77 466678999999881 1111122 224479999999999999 899998863
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=265.38 Aligned_cols=261 Identities=17% Similarity=0.166 Sum_probs=198.5
Q ss_pred CCCeEEEE----cCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh-------hcC-CCceeEEEeecCCchhHHH
Q 022280 2 SKKRVLVV----GGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL-------DAL-PHSFVFFDVDLKSGSGFDA 69 (300)
Q Consensus 2 ~~~~ilIt----GatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~-------~~~-~~~~~~~~~D~~~~~~~~~ 69 (300)
++|+|||| |||||||++|++.|+++| ++|+++.|+......+. ..+ ..++.++++|+.| +..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~ 124 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VKS 124 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HHh
Confidence 35789999 999999999999999999 89999999865422111 011 1347778999877 444
Q ss_pred HHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCC
Q 022280 70 VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPV 148 (300)
Q Consensus 70 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~ 148 (300)
++.. .++|+|||+++. +..++ .+++++|++.|+++|||+||..+|+.... ++.|+++..|.
T Consensus 125 ~~~~-~~~d~Vi~~~~~----------------~~~~~-~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~~~~p~ 186 (378)
T PLN00016 125 KVAG-AGFDVVYDNNGK----------------DLDEV-EPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGDAVKPK 186 (378)
T ss_pred hhcc-CCccEEEeCCCC----------------CHHHH-HHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCCcCCCc
Confidence 4432 389999999652 12234 38999999999999999999999997654 77888776655
Q ss_pred ChhHHHHHHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIIL 226 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~ 226 (300)
+ +|..+|.++++.+.+++++||+++|||+.... .. .++...+..++++.+++ .+.++|+|++|+|+++.
T Consensus 187 ~----sK~~~E~~l~~~~l~~~ilRp~~vyG~~~~~~----~~-~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~ 257 (378)
T PLN00016 187 A----GHLEVEAYLQKLGVNWTSFRPQYIYGPGNNKD----CE-EWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFA 257 (378)
T ss_pred c----hHHHHHHHHHHcCCCeEEEeceeEECCCCCCc----hH-HHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHH
Confidence 4 89999999998888999999999999975321 12 23333344666676665 46789999999999999
Q ss_pred HHHhccccccccccceeeecCCCccCHHHHHHh-----hc--c-----C------------CCCCccccChHHHHHhcCC
Q 022280 227 ALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV-----DR--G-----V------------QSPADISMDITKLVQTLNI 282 (300)
Q Consensus 227 ~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~-----~~--~-----~------------~~~~~~~~~~~k~~~~lg~ 282 (300)
.+++++...++ +||+++++.+|+.|+++. .. . . .....+..|++|++++|||
T Consensus 258 ~~l~~~~~~~~----~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~~~LGw 333 (378)
T PLN00016 258 LVVGNPKAAGQ----IFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAKEELGW 333 (378)
T ss_pred HHhcCccccCC----EEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCHHHHHHhcCC
Confidence 99988544334 999999999999999881 00 0 0 0112334699999999999
Q ss_pred Cc-CCHHHHHHHHHhhhc
Q 022280 283 DP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 283 ~p-~~~~~~l~~~~~~~~ 299 (300)
+| ++++++|+++++||.
T Consensus 334 ~p~~~l~egl~~~~~~~~ 351 (378)
T PLN00016 334 TPKFDLVEDLKDRYELYF 351 (378)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 99 899999999999974
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=251.94 Aligned_cols=229 Identities=26% Similarity=0.348 Sum_probs=190.1
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEccc
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAA 85 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a~ 85 (300)
|||||||||||++++++|+++| ++|+.+.|+.......... ..+.++.+|+.|.+.+..+++.. .+|+|||+|+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~~~~~~~~~~~--~~~~~~~~dl~~~~~~~~~~~~~-~~d~vi~~a~ 74 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRSSNSESFEEKK--LNVEFVIGDLTDKEQLEKLLEKA-NIDVVIHLAA 74 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESCSTGGHHHHHH--TTEEEEESETTSHHHHHHHHHHH-TESEEEEEBS
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Ccccccccccccccccccc--ceEEEEEeecccccccccccccc-CceEEEEeec
Confidence 7999999999999999999999 8888888886655433322 16788999999999999999877 8999999999
Q ss_pred ccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHHHHH
Q 022280 86 LSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFIYE 164 (300)
Q Consensus 86 ~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~~~~ 164 (300)
..........+...++.|+.++. +++++|.+.+++++|++||..+|+.... +++|+++..|.+.|+.+|...|++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~-~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~ 153 (236)
T PF01370_consen 75 FSSNPESFEDPEEIIEANVQGTR-NLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLRD 153 (236)
T ss_dssp SSSHHHHHHSHHHHHHHHHHHHH-HHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 76432233577888999999996 9999999999999999999999999854 889999999999999999999999987
Q ss_pred Hc----CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHhcccccccc
Q 022280 165 KC----SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNRWLSEDKQ 238 (300)
Q Consensus 165 ~~----~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~~~~~~ 238 (300)
+. .+++++||+++|||+........+...++..+. .++++.+++ ++.++|+|++|+|++++.+++++...++
T Consensus 154 ~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~- 231 (236)
T PF01370_consen 154 YAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQAL-KGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKAAGG- 231 (236)
T ss_dssp HHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHH-TTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCTTTE-
T ss_pred cccccccccccccccccccccccccccccccchhhHHhh-cCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCCCCC-
Confidence 64 579999999999999434445555666666665 666677765 4689999999999999999999773333
Q ss_pred ccceeeec
Q 022280 239 MQLLLNVG 246 (300)
Q Consensus 239 ~~~i~ni~ 246 (300)
+||++
T Consensus 232 ---~yNig 236 (236)
T PF01370_consen 232 ---IYNIG 236 (236)
T ss_dssp ---EEEES
T ss_pred ---EEEeC
Confidence 99985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=252.13 Aligned_cols=286 Identities=26% Similarity=0.294 Sum_probs=217.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
.+.+++||||+||+|++|+++|++++.. .++.+++..+.......+. ....+.++++|+.|...+...+. ++
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~-~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~---~~- 77 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELK-LEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQ---GA- 77 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccc-cEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhcc---Cc-
Confidence 4678999999999999999999999965 8899998876422111111 25678888899999877777666 78
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCC---CCCChhHHH
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEI---APVNVYGKS 154 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~---~p~~~Y~~s 154 (300)
.|+|||+...+.....+++..+++|+.||. +++++|.+.+++++||+||..|..+... ...+++.+ .....|+.|
T Consensus 78 ~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~-nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~~s 156 (361)
T KOG1430|consen 78 VVVHCAASPVPDFVENDRDLAMRVNVNGTL-NVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYGES 156 (361)
T ss_pred eEEEeccccCccccccchhhheeecchhHH-HHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCCCccccccccchH
Confidence 899998877666666678999999999996 9999999999999999999999877665 33333333 333599999
Q ss_pred HHHHHHHHHHHcC----CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHH
Q 022280 155 KVAAEKFIYEKCS----NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 155 K~~~e~~~~~~~~----~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~ 228 (300)
|+.+|+++++.+. ..++|||+.||||++....+ .+..+++.++.+...++ ...++++++.++.+++.+
T Consensus 157 Ka~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~------~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA 230 (361)
T KOG1430|consen 157 KALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLP------KIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILA 230 (361)
T ss_pred HHHHHHHHHHhcCCCCeeEEEEccccccCCCCccccH------HHHHHHHccCceEEeeccccccceEEechhHHHHHHH
Confidence 9999999998874 47999999999999754332 24455556666665554 578999999999988877
Q ss_pred Hhccc-cccccccceeeecCCCccCHHHHHH-----------------------------h---hccCCC----------
Q 022280 229 TNRWL-SEDKQMQLLLNVGGPDRVSRVQMAE-----------------------------V---DRGVQS---------- 265 (300)
Q Consensus 229 ~~~~~-~~~~~~~~i~ni~~~~~~s~~e~~~-----------------------------~---~~~~~~---------- 265 (300)
...-. ......+++|+|.++.++...+... + ..++..
T Consensus 231 ~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~~v~~ 310 (361)
T KOG1430|consen 231 ARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRFRVAL 310 (361)
T ss_pred HHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChhheee
Confidence 76544 2222345599999998876655444 0 001001
Q ss_pred -CCccccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 266 -PADISMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 266 -~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
....++++.|++++|||.| .++++++.+++.|+.
T Consensus 311 ~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~ 346 (361)
T KOG1430|consen 311 LGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVA 346 (361)
T ss_pred eccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHh
Confidence 1245789999999999999 999999999998875
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=264.57 Aligned_cols=267 Identities=16% Similarity=0.138 Sum_probs=195.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc--------CCCceeEEEeecCCchhHHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA--------LPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
+++|+||||||+||||++++++|+++| ++|+++.|+.+....+... ....+.++++|++|.+++.++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G---~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHG---YSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 357899999999999999999999999 8998888875443332211 01246778999999988888877
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhc-cCCeEEEeecc--ccccCC---C--CCCCCCC-
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTD--QVYEGV---K--SFYKEED- 143 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~--~~~~~~---~--~~~~E~~- 143 (300)
++|+|||+|+..........+....++|+.++. +++++|.+. ++++||++||. .+|+.. . ..++|++
T Consensus 128 ---~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~-~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~ 203 (367)
T PLN02686 128 ---GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASE-NVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESW 203 (367)
T ss_pred ---hccEEEecCeeecccccccccchhhhhhHHHHH-HHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCC
Confidence 799999999976443211122455678999996 999999885 79999999996 477641 1 2366654
Q ss_pred -----CCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 144 -----EIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 144 -----~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
+..|.+.|+.||.++|++++.+ +.+++++||++||||+.....+. .+...+ .+. +.++|++..+
T Consensus 204 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~-----~~~~~~-~g~-~~~~g~g~~~ 276 (367)
T PLN02686 204 SDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNST-----ATIAYL-KGA-QEMLADGLLA 276 (367)
T ss_pred CChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCCh-----hHHHHh-cCC-CccCCCCCcC
Confidence 3346678999999999998765 45789999999999985422221 122333 232 4566766678
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH-----h---------hcc-CCCCCccccChHHHHHh
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----V---------DRG-VQSPADISMDITKLVQT 279 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~---------~~~-~~~~~~~~~~~~k~~~~ 279 (300)
|+||+|+|++++.+++..... ..+++| +++++.+++.|+++ . ... ..++..+..|++|++++
T Consensus 277 ~v~V~Dva~A~~~al~~~~~~--~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~d~~kl~~~ 353 (367)
T PLN02686 277 TADVERLAEAHVCVYEAMGNK--TAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFELSNKKLSRL 353 (367)
T ss_pred eEEHHHHHHHHHHHHhccCCC--CCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccccHHHHHHH
Confidence 999999999999999853110 112378 88889999999988 1 011 23355678899999999
Q ss_pred cCCCc
Q 022280 280 LNIDP 284 (300)
Q Consensus 280 lg~~p 284 (300)
|||+|
T Consensus 354 l~~~~ 358 (367)
T PLN02686 354 MSRTR 358 (367)
T ss_pred HHHhh
Confidence 99998
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=236.72 Aligned_cols=286 Identities=19% Similarity=0.182 Sum_probs=222.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc--hhh--hhhc---CCCceeEEEeecCCchhHHHHHHhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQL--LLDA---LPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~--~~~--~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
++|++||||-||+-|++|++.|++.| |+|++..|+... ... +... -..++.++.+|++|...+..+++..
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekG---Y~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v 77 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKG---YEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV 77 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcC---cEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhc
Confidence 46899999999999999999999999 999999998432 111 1111 1234778999999999999999887
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC--CeEEEeeccccccCCCC-CCCCCCCCCCCChh
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE--NLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVY 151 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~--~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y 151 (300)
+||-|+|+|+.+....++++|..+.+++..|++ +++++.+..+. -||...||...||...+ |.+|.+|..|.++|
T Consensus 78 -~PdEIYNLaAQS~V~vSFe~P~~T~~~~~iGtl-rlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPY 155 (345)
T COG1089 78 -QPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTL-RLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPY 155 (345)
T ss_pred -CchhheeccccccccccccCcceeeeechhHHH-HHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCCCCCCHH
Confidence 999999999999988899999999999999998 99999998654 38999999999998876 99999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcee-EeeeeeeCCCCCCCCCCCchHHH---HHHHHhcCCceeecc--CcccCceeHHHHHHHH
Q 022280 152 GKSKVAAEKFIYEKCSNFAI-LRSSIIYGPQTISPVPKSLPIQW---IDSVLSKGEKVEFFH--DECRCPVYVRDVVKII 225 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~~~~i-lR~~~v~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~ 225 (300)
+.+|..+-.+...+...|.+ ...|+.|-...+.......-.++ +..+-.+.......| +..|||-|..|.++++
T Consensus 156 AvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~m 235 (345)
T COG1089 156 AVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAM 235 (345)
T ss_pred HHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHHH
Confidence 99999999988877665533 23344554332222111111122 222222223333344 4789999999999999
Q ss_pred HHHHhccccccccccceeeecCCCccCHHHHHH--------------------------------hhccCCCCCc---cc
Q 022280 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE--------------------------------VDRGVQSPAD---IS 270 (300)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~--------------------------------~~~~~~~~~~---~~ 270 (300)
+.+++++.++ -|++++|+..|++|+++ ++....+|.. +.
T Consensus 236 wlmLQq~~Pd------dyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV~~Ll 309 (345)
T COG1089 236 WLMLQQEEPD------DYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLL 309 (345)
T ss_pred HHHHccCCCC------ceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchhhhhhc
Confidence 9999997755 69999999999999998 1222233332 34
Q ss_pred cChHHHHHhcCCCc-CCHHHHHHHHHhhh
Q 022280 271 MDITKLVQTLNIDP-VTYKDGVKLTLAAE 298 (300)
Q Consensus 271 ~~~~k~~~~lg~~p-~~~~~~l~~~~~~~ 298 (300)
.|.+|+++.|||+| +++++.+++|+++.
T Consensus 310 gdp~KA~~~LGW~~~~~~~elv~~Mv~~d 338 (345)
T COG1089 310 GDPTKAKEKLGWRPEVSLEELVREMVEAD 338 (345)
T ss_pred CCHHHHHHHcCCccccCHHHHHHHHHHHH
Confidence 79999999999999 99999999999875
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=239.03 Aligned_cols=251 Identities=21% Similarity=0.238 Sum_probs=185.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
.|+||||||+||||++|++.|+++| ++|+... .|+.|.+.+...++.. ++|+|||
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g---~~V~~~~---------------------~~~~~~~~v~~~l~~~-~~D~ViH 63 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG---IDFHYGS---------------------GRLENRASLEADIDAV-KPTHVFN 63 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC---CEEEEec---------------------CccCCHHHHHHHHHhc-CCCEEEE
Confidence 4789999999999999999999999 7776321 2344555555555554 8999999
Q ss_pred cccccCcc---ccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC------C-CCCCCCCCC-CCChh
Q 022280 83 CAALSVPR---VCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK------S-FYKEEDEIA-PVNVY 151 (300)
Q Consensus 83 ~a~~~~~~---~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~------~-~~~E~~~~~-p~~~Y 151 (300)
+||..... .++.++..++++|+.++. +++++|++.+++ ++++||.++|+... . +++|++++. |.+.|
T Consensus 64 ~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~-~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~s~Y 141 (298)
T PLN02778 64 AAGVTGRPNVDWCESHKVETIRANVVGTL-TLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTGSFY 141 (298)
T ss_pred CCcccCCCCchhhhhCHHHHHHHHHHHHH-HHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCCCCCCCCch
Confidence 99987532 245678899999999997 999999999984 67778888886532 1 478777665 45899
Q ss_pred HHHHHHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhc
Q 022280 152 GKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 231 (300)
+.||.++|.+++.++ +..++|+..++|++.. .+..++..++ .+..+...+ ++|+|++|++++++.++++
T Consensus 142 g~sK~~~E~~~~~y~-~~~~lr~~~~~~~~~~------~~~~fi~~~~-~~~~~~~~~---~s~~yv~D~v~al~~~l~~ 210 (298)
T PLN02778 142 SKTKAMVEELLKNYE-NVCTLRVRMPISSDLS------NPRNFITKIT-RYEKVVNIP---NSMTILDELLPISIEMAKR 210 (298)
T ss_pred HHHHHHHHHHHHHhh-ccEEeeecccCCcccc------cHHHHHHHHH-cCCCeeEcC---CCCEEHHHHHHHHHHHHhC
Confidence 999999999998875 5678999888876421 1223555555 444333333 3799999999999999976
Q ss_pred cccccccccceeeecCCCccCHHHHHHhhccCC--------------------CCCccccChHHHHHhcCCCcCCHHHHH
Q 022280 232 WLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGVQ--------------------SPADISMDITKLVQTLNIDPVTYKDGV 291 (300)
Q Consensus 232 ~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~~~~--------------------~~~~~~~~~~k~~~~lg~~p~~~~~~l 291 (300)
.. .++||+++++.+|+.|+++...... .-.+..+|++|+++.++=.+...++++
T Consensus 211 ~~------~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~~~~~~~~~~~ 284 (298)
T PLN02778 211 NL------TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFPELLPIKESLI 284 (298)
T ss_pred CC------CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHHHHHhcccccchHHHHH
Confidence 32 1399999999999999988111110 111336999999998887667778888
Q ss_pred HHHHhh
Q 022280 292 KLTLAA 297 (300)
Q Consensus 292 ~~~~~~ 297 (300)
+..++.
T Consensus 285 ~~~~~~ 290 (298)
T PLN02778 285 KYVFEP 290 (298)
T ss_pred HHHHHH
Confidence 887764
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=243.16 Aligned_cols=254 Identities=15% Similarity=0.161 Sum_probs=191.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|||||||||||++++++|+++| ++|+++.|+.++...+. ..+++++++|++|++++...++ ++|+|||+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R~~~~~~~l~---~~~v~~v~~Dl~d~~~l~~al~---g~d~Vi~~ 71 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVRNLRKASFLK---EWGAELVYGDLSLPETLPPSFK---GVTAIIDA 71 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEcChHHhhhHh---hcCCEEEECCCCCHHHHHHHHC---CCCEEEEC
Confidence 589999999999999999999999 89999999864433222 2357889999999988887776 89999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY 163 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~ 163 (300)
++.. ..++....++|+.++. +++++|++.++++||++||..+... +.++|..+|..+|++++
T Consensus 72 ~~~~-----~~~~~~~~~~~~~~~~-~l~~aa~~~gvkr~I~~Ss~~~~~~------------~~~~~~~~K~~~e~~l~ 133 (317)
T CHL00194 72 STSR-----PSDLYNAKQIDWDGKL-ALIEAAKAAKIKRFIFFSILNAEQY------------PYIPLMKLKSDIEQKLK 133 (317)
T ss_pred CCCC-----CCCccchhhhhHHHHH-HHHHHHHHcCCCEEEEecccccccc------------CCChHHHHHHHHHHHHH
Confidence 7632 1234557788999996 9999999999999999999643211 23568999999999999
Q ss_pred HHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc-CcccCceeHHHHHHHHHHHHhccccccccccce
Q 022280 164 EKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH-DECRCPVYVRDVVKIILALTNRWLSEDKQMQLL 242 (300)
Q Consensus 164 ~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i 242 (300)
+.+.+++++||+.+|+.-. ..+....+ .+.++.+.+ ++.++|+|++|+|++++.+++.+...++ +
T Consensus 134 ~~~l~~tilRp~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~----~ 199 (317)
T CHL00194 134 KSGIPYTIFRLAGFFQGLI---------SQYAIPIL-EKQPIWITNESTPISYIDTQDAAKFCLKSLSLPETKNK----T 199 (317)
T ss_pred HcCCCeEEEeecHHhhhhh---------hhhhhhhc-cCCceEecCCCCccCccCHHHHHHHHHHHhcCccccCc----E
Confidence 9989999999998885311 01111122 234444443 4678999999999999999987544444 9
Q ss_pred eeecCCCccCHHHHHH-------------------------hhccC---------------CCC-CccccChHHHHHhcC
Q 022280 243 LNVGGPDRVSRVQMAE-------------------------VDRGV---------------QSP-ADISMDITKLVQTLN 281 (300)
Q Consensus 243 ~ni~~~~~~s~~e~~~-------------------------~~~~~---------------~~~-~~~~~~~~k~~~~lg 281 (300)
||+++++.+|++|+++ ..... ... .+..++.++++++||
T Consensus 200 ~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 279 (317)
T CHL00194 200 FPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSSMAELYKIFK 279 (317)
T ss_pred EEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCCHHHHHHHhC
Confidence 9999999999999988 00000 000 123357788999999
Q ss_pred CCc---CCHHHHHHHHHhhh
Q 022280 282 IDP---VTYKDGVKLTLAAE 298 (300)
Q Consensus 282 ~~p---~~~~~~l~~~~~~~ 298 (300)
+.| .++++++++.+...
T Consensus 280 ~~p~~~~~~~~~~~~~~~~~ 299 (317)
T CHL00194 280 IDPNELISLEDYFQEYFERI 299 (317)
T ss_pred CChhhhhhHHHHHHHHHHHH
Confidence 997 58999999887653
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=263.44 Aligned_cols=235 Identities=19% Similarity=0.252 Sum_probs=184.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|+|||||||||++++++|+++| ++|++++|+.... ....+.++.+|++|.+++..+++ ++|+||||
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G---~~Vv~l~R~~~~~------~~~~v~~v~gDL~D~~~l~~al~---~vD~VVHl 68 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG---HEVVGIARHRPDS------WPSSADFIAADIRDATAVESAMT---GADVVAHC 68 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCchhh------cccCceEEEeeCCCHHHHHHHHh---CCCEEEEC
Confidence 589999999999999999999999 8999999874321 12356778999999988888776 79999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY 163 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~ 163 (300)
|+.... .+++|+.++. +++++|++.++++||++||.. |..+|+++.
T Consensus 69 Aa~~~~---------~~~vNv~GT~-nLLeAa~~~gvkr~V~iSS~~------------------------K~aaE~ll~ 114 (854)
T PRK05865 69 AWVRGR---------NDHINIDGTA-NVLKAMAETGTGRIVFTSSGH------------------------QPRVEQMLA 114 (854)
T ss_pred CCcccc---------hHHHHHHHHH-HHHHHHHHcCCCeEEEECCcH------------------------HHHHHHHHH
Confidence 975321 4688999996 999999999999999999842 889999998
Q ss_pred HHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHhccccccccccc
Q 022280 164 EKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNRWLSEDKQMQL 241 (300)
Q Consensus 164 ~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~ 241 (300)
+++.+++++||+++|||+.. .++...+ . ..+...|+ +.++|+|++|+|++++.+++.....+ +
T Consensus 115 ~~gl~~vILRp~~VYGP~~~---------~~i~~ll-~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~~g----g 179 (854)
T PRK05865 115 DCGLEWVAVRCALIFGRNVD---------NWVQRLF-A-LPVLPAGYADRVVQVVHSDDAQRLLVRALLDTVIDS----G 179 (854)
T ss_pred HcCCCEEEEEeceEeCCChH---------HHHHHHh-c-CceeccCCCCceEeeeeHHHHHHHHHHHHhCCCcCC----C
Confidence 88899999999999998621 2333322 1 22222333 35699999999999999987533222 3
Q ss_pred eeeecCCCccCHHHHHHhhcc--------CC----C-------CCccccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 242 LLNVGGPDRVSRVQMAEVDRG--------VQ----S-------PADISMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 242 i~ni~~~~~~s~~e~~~~~~~--------~~----~-------~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
+||+++++.+|+.|+++.... .. . .....+|++|++++|||+| ++++++|+++++||.
T Consensus 180 vyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~dti~~~r 257 (854)
T PRK05865 180 PVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAEECLEDFTLAVR 257 (854)
T ss_pred eEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999982111 00 0 0123579999999999999 899999999999984
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=214.89 Aligned_cols=271 Identities=16% Similarity=0.142 Sum_probs=208.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+|+|||||++|.+|++|.+.+.+.|.+ -+-+++.-+ -.+|+++.++.+++++.. +|.+|||
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~-~e~wvf~~s-----------------kd~DLt~~a~t~~lF~~e-kPthVIh 61 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFD-DENWVFIGS-----------------KDADLTNLADTRALFESE-KPTHVIH 61 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCC-CcceEEecc-----------------ccccccchHHHHHHHhcc-CCceeee
Confidence 579999999999999999999999831 122222111 368999999999999987 9999999
Q ss_pred cccccCccc-cccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCC----CCCCCC-hhHHHH
Q 022280 83 CAALSVPRV-CENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEED----EIAPVN-VYGKSK 155 (300)
Q Consensus 83 ~a~~~~~~~-~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~----~~~p~~-~Y~~sK 155 (300)
+|+..+.-. ....+.+.+..|+...- |++..|-+.|++++++..|+++|..... ||+|.+ |+.|.+ .|+.+|
T Consensus 62 lAAmVGGlf~N~~ynldF~r~Nl~ind-NVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAK 140 (315)
T KOG1431|consen 62 LAAMVGGLFHNNTYNLDFIRKNLQIND-NVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAK 140 (315)
T ss_pred hHhhhcchhhcCCCchHHHhhcceech-hHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHH
Confidence 999875422 23356677888887774 9999999999999999999999988776 999986 455554 799999
Q ss_pred HHHHHHHH----HHcCCceeEeeeeeeCCCCC-CCCCCCchHHHHHHHH----hcCCceeeccC--cccCceeHHHHHHH
Q 022280 156 VAAEKFIY----EKCSNFAILRSSIIYGPQTI-SPVPKSLPIQWIDSVL----SKGEKVEFFHD--ECRCPVYVRDVVKI 224 (300)
Q Consensus 156 ~~~e~~~~----~~~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~i~v~D~a~~ 224 (300)
.++.-.-+ +++..++.+-|+++|||.+. .+.....++.++...- .+...+.++|. ++|+|+|++|+|++
T Consensus 141 r~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l 220 (315)
T KOG1431|consen 141 RMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADL 220 (315)
T ss_pred HHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHH
Confidence 77765444 44557899999999999875 3344455555554332 23347888875 58999999999999
Q ss_pred HHHHHhccccccccccceeeecCCC--ccCHHHHHH--------------hhccCCCCCccccChHHHHHhcCCCc--CC
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPD--RVSRVQMAE--------------VDRGVQSPADISMDITKLVQTLNIDP--VT 286 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~--~~s~~e~~~--------------~~~~~~~~~~~~~~~~k~~~~lg~~p--~~ 286 (300)
+++++++.+.- + ..+++.++ .+|++|+++ -..+...+.....|++|++. |+|.| .+
T Consensus 221 ~i~vlr~Y~~v-E----piils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasnsKL~s-l~pd~~ft~ 294 (315)
T KOG1431|consen 221 FIWVLREYEGV-E----PIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASNSKLRS-LLPDFKFTP 294 (315)
T ss_pred HHHHHHhhcCc-c----ceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccchHHHHH-hCCCcccCh
Confidence 99999986543 2 57888877 799999998 11233444556789999955 88888 56
Q ss_pred HHHHHHHHHhhhc
Q 022280 287 YKDGVKLTLAAEA 299 (300)
Q Consensus 287 ~~~~l~~~~~~~~ 299 (300)
++++|.++++||.
T Consensus 295 l~~ai~~t~~Wy~ 307 (315)
T KOG1431|consen 295 LEQAISETVQWYL 307 (315)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=234.23 Aligned_cols=256 Identities=16% Similarity=0.104 Sum_probs=181.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc--hhhhhhcC---CCceeEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQLLLDAL---PHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~--~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
.+++|||||||||||++++++|+++| ++|+++.|+.+. .......+ +.++.++++|++|.+++.+.+. +
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~---~ 78 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRG---YTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALK---G 78 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHc---C
Confidence 35789999999999999999999999 899999886432 11122222 2457788999999988877776 8
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhc-cCCeEEEeeccccc--cCC----CCCCCCCCCCCCC-
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQVY--EGV----KSFYKEEDEIAPV- 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~~~--~~~----~~~~~E~~~~~p~- 148 (300)
+|+|+|+++..... ...++..+++|+.|+. +++++|.+. ++++||++||..++ ++. ..+++|+++..+.
T Consensus 79 ~d~v~~~~~~~~~~--~~~~~~~~~~nv~gt~-~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~ 155 (297)
T PLN02583 79 CSGLFCCFDPPSDY--PSYDEKMVDVEVRAAH-NVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNF 155 (297)
T ss_pred CCEEEEeCccCCcc--cccHHHHHHHHHHHHH-HHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHH
Confidence 99999987643221 1245678999999997 999999885 68899999998764 321 1257787654322
Q ss_pred -----ChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 149 -----NVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 149 -----~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
..|+.||..+|++++.+ +.+++++||++||||+..... . .+ .+ .....+.+..+|+||+
T Consensus 156 ~~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~------~----~~-~~-~~~~~~~~~~~~v~V~ 223 (297)
T PLN02583 156 CRKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN------P----YL-KG-AAQMYENGVLVTVDVN 223 (297)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch------h----hh-cC-CcccCcccCcceEEHH
Confidence 26999999999998654 458899999999999753211 1 11 11 1123334456799999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhh----ccC----------CCCCccccChHHHHHhcCCCc
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD----RGV----------QSPADISMDITKLVQTLNIDP 284 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~----~~~----------~~~~~~~~~~~k~~~~lg~~p 284 (300)
|+|++++++++.+...+ .|+++++......+++++. ... .......++++|+ ++|||++
T Consensus 224 Dva~a~~~al~~~~~~~-----r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~~~ 296 (297)
T PLN02583 224 FLVDAHIRAFEDVSSYG-----RYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYEMQGSEVYQQRIRNKKL-NKLMEDF 296 (297)
T ss_pred HHHHHHHHHhcCcccCC-----cEEEecCCCccHHHHHHHHHHhCCCCCCCCcccccCCCccccccChHHH-HHhCccc
Confidence 99999999999765554 4888776555556565511 000 1112346899999 5589874
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=245.04 Aligned_cols=247 Identities=19% Similarity=0.202 Sum_probs=177.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh---hhh-------------hcC--------CCceeEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ---LLL-------------DAL--------PHSFVFF 57 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~---~~~-------------~~~--------~~~~~~~ 57 (300)
++++|||||||||||++|+++|+..+.++-+|+++.|+.+... .+. +.. ..++.++
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i 89 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV 89 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence 5789999999999999999999988755457899999754211 111 111 1567889
Q ss_pred EeecCCc-------hhHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhc-cCCeEEEeecc
Q 022280 58 DVDLKSG-------SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTD 129 (300)
Q Consensus 58 ~~D~~~~-------~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~ 129 (300)
.+|++++ +.++.+++ ++|+|||+|+..... .+++..+++|+.|+. +++++|++. +++++||+||.
T Consensus 90 ~GDl~~~~LGLs~~~~~~~l~~---~vD~ViH~AA~v~~~---~~~~~~~~~Nv~gt~-~ll~~a~~~~~~k~~V~vST~ 162 (491)
T PLN02996 90 PGDISYDDLGVKDSNLREEMWK---EIDIVVNLAATTNFD---ERYDVALGINTLGAL-NVLNFAKKCVKVKMLLHVSTA 162 (491)
T ss_pred ecccCCcCCCCChHHHHHHHHh---CCCEEEECccccCCc---CCHHHHHHHHHHHHH-HHHHHHHhcCCCCeEEEEeee
Confidence 9999854 33445554 899999999987542 367888999999996 999999885 78899999999
Q ss_pred ccccCCCCCCCCCC----------------------------------------------------CCCCCChhHHHHHH
Q 022280 130 QVYEGVKSFYKEED----------------------------------------------------EIAPVNVYGKSKVA 157 (300)
Q Consensus 130 ~~~~~~~~~~~E~~----------------------------------------------------~~~p~~~Y~~sK~~ 157 (300)
.+||...+.+.|.. ...+.+.|+.||..
T Consensus 163 ~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~ 242 (491)
T PLN02996 163 YVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAM 242 (491)
T ss_pred EEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHH
Confidence 99987543222210 01134679999999
Q ss_pred HHHHHHHHc--CCceeEeeeeeeCCCCCCCCCCCc-----hHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHH
Q 022280 158 AEKFIYEKC--SNFAILRSSIIYGPQTISPVPKSL-----PIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 158 ~e~~~~~~~--~~~~ilR~~~v~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~ 228 (300)
+|+++.+++ .+++++||++||||.. .+.+..+ +..++.... .+....+.| ++.+|++||+|+|++++.+
T Consensus 243 aE~lv~~~~~~lpv~i~RP~~V~G~~~-~p~~gwi~~~~~~~~i~~~~~-~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a 320 (491)
T PLN02996 243 GEMLLGNFKENLPLVIIRPTMITSTYK-EPFPGWIEGLRTIDSVIVGYG-KGKLTCFLADPNSVLDVIPADMVVNAMIVA 320 (491)
T ss_pred HHHHHHHhcCCCCEEEECCCEeccCCc-CCCCCcccchhhHHHHHHHhc-cceEeEEecCCCeecceecccHHHHHHHHH
Confidence 999998874 4789999999999874 2233221 122232222 444444555 4689999999999999999
Q ss_pred HhccccccccccceeeecCC--CccCHHHHHH
Q 022280 229 TNRWLSEDKQMQLLLNVGGP--DRVSRVQMAE 258 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~~~--~~~s~~e~~~ 258 (300)
+...... .....+||++++ .++|+.|+++
T Consensus 321 ~~~~~~~-~~~~~vYNi~s~~~~~~s~~ei~~ 351 (491)
T PLN02996 321 MAAHAGG-QGSEIIYHVGSSLKNPVKFSNLHD 351 (491)
T ss_pred HHHhhcc-CCCCcEEEecCCCCCcccHHHHHH
Confidence 8763101 011349999998 7899999988
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=230.35 Aligned_cols=258 Identities=16% Similarity=0.152 Sum_probs=177.3
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEccc
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAA 85 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a~ 85 (300)
|||||||||||+++++.|+++| ++|+++.|+++....... .. ..|+.. +... +.+.++|+|||+|+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~-----~~--~~~~~~-~~~~---~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTRSPPAGANTKW-----EG--YKPWAP-LAES---EALEGADAVINLAG 66 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeCCCCCCCcccc-----ee--eecccc-cchh---hhcCCCCEEEECCC
Confidence 6999999999999999999999 999999998665432210 00 112222 2222 33348999999999
Q ss_pred ccCcc--ccccChhhhhhcccccchHHHHHhhhhccCC--eEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHH
Q 022280 86 LSVPR--VCENDPDSAMSINVPSSLVNWLSSFTENKEN--LLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~--~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
..... .....+...+++|+.++. +++++|++.+++ .+|+.||..+|+.... +++|++++.+.+.|+..+...|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~~~~~~~~~~~~~~e~ 145 (292)
T TIGR01777 67 EPIADKRWTEERKQEIRDSRIDTTR-ALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSPAGDDFLAELCRDWEE 145 (292)
T ss_pred CCcccccCCHHHHHHHHhcccHHHH-HHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCCCCCChHHHHHHHHHH
Confidence 75432 222245677899999996 999999998874 5666677778987553 78898866666667777777777
Q ss_pred HHHH---HcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceee-ccCcccCceeHHHHHHHHHHHHhcccccc
Q 022280 161 FIYE---KCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEF-FHDECRCPVYVRDVVKIILALTNRWLSED 236 (300)
Q Consensus 161 ~~~~---~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~D~a~~~~~~~~~~~~~~ 236 (300)
.+.. .+.+++++||+.+|||+.. ....+. ..........+ .++..++|+|++|+|+++..+++++...
T Consensus 146 ~~~~~~~~~~~~~ilR~~~v~G~~~~------~~~~~~-~~~~~~~~~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~~~- 217 (292)
T TIGR01777 146 AAQAAEDLGTRVVLLRTGIVLGPKGG------ALAKML-PPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFALENASIS- 217 (292)
T ss_pred HhhhchhcCCceEEEeeeeEECCCcc------hhHHHH-HHHhcCcccccCCCCcccccEeHHHHHHHHHHHhcCcccC-
Confidence 6543 3458999999999999642 111111 11211111112 2356899999999999999999874332
Q ss_pred ccccceeeecCCCccCHHHHHHhhc---c----CCC----------------CCccccChHHHHHhcCCCc-C-CHHHHH
Q 022280 237 KQMQLLLNVGGPDRVSRVQMAEVDR---G----VQS----------------PADISMDITKLVQTLNIDP-V-TYKDGV 291 (300)
Q Consensus 237 ~~~~~i~ni~~~~~~s~~e~~~~~~---~----~~~----------------~~~~~~~~~k~~~~lg~~p-~-~~~~~l 291 (300)
++||+++++.+|+.|+++... + ... ..+...+++|+++ +||+| + ++++++
T Consensus 218 ----g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 218 ----GPVNATAPEPVRNKEFAKALARALHRPAFFPVPAFVLRALLGEMADLLLKGQRVLPEKLLE-AGFQFQYPDLDEAL 292 (292)
T ss_pred ----CceEecCCCccCHHHHHHHHHHHhCCCCcCcCCHHHHHHHhchhhHHHhCCcccccHHHHh-cCCeeeCcChhhcC
Confidence 389999999999999998110 0 000 1234567899964 99999 6 688764
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-31 Score=251.86 Aligned_cols=284 Identities=17% Similarity=0.146 Sum_probs=199.6
Q ss_pred CeEEEEcCCccchHHHHHhhh--hccCCCceeeecCCCCCc--hhhhhhcC-CCceeEEEeecCCchh--HHHHHHhcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLS--EIEGKPYDVAATHHSTPL--PQLLLDAL-PHSFVFFDVDLKSGSG--FDAVALKFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~--~~g~~~~~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~--~~~~~~~~~~ 76 (300)
|+|||||||||||++|+++|+ +.| ++|++++|+... ...+.... ...++++.+|++|++. .....+.+.+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g---~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE---ATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGD 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC---CEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcC
Confidence 589999999999999999999 577 899999996432 11222222 1467889999998541 0111222248
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCC---CCCCChhHH
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDE---IAPVNVYGK 153 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~---~~p~~~Y~~ 153 (300)
+|+|||||+..... ..+....++|+.++. +++++|.+.++++|||+||..+||....+++|++. ..+.+.|+.
T Consensus 78 ~D~Vih~Aa~~~~~---~~~~~~~~~nv~gt~-~ll~~a~~~~~~~~v~~SS~~v~g~~~~~~~e~~~~~~~~~~~~Y~~ 153 (657)
T PRK07201 78 IDHVVHLAAIYDLT---ADEEAQRAANVDGTR-NVVELAERLQAATFHHVSSIAVAGDYEGVFREDDFDEGQGLPTPYHR 153 (657)
T ss_pred CCEEEECceeecCC---CCHHHHHHHHhHHHH-HHHHHHHhcCCCeEEEEeccccccCccCccccccchhhcCCCCchHH
Confidence 99999999976432 245667889999996 99999999999999999999999887666677653 234578999
Q ss_pred HHHHHHHHHHH-HcCCceeEeeeeeeCCCCCCCCCCC----chHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHH
Q 022280 154 SKVAAEKFIYE-KCSNFAILRSSIIYGPQTISPVPKS----LPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIIL 226 (300)
Q Consensus 154 sK~~~e~~~~~-~~~~~~ilR~~~v~G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~ 226 (300)
||..+|+++++ .+.+++++||++|||++........ ....++.........+...+ .+..+++|++|+++++.
T Consensus 154 sK~~~E~~~~~~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~ 233 (657)
T PRK07201 154 TKFEAEKLVREECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALD 233 (657)
T ss_pred HHHHHHHHHHHcCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHH
Confidence 99999999985 4568999999999998653221111 01112222211111122222 35679999999999999
Q ss_pred HHHhccccccccccceeeecCCCccCHHHHHH-----hhccC-----------------C--------------------
Q 022280 227 ALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRGV-----------------Q-------------------- 264 (300)
Q Consensus 227 ~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~~-----------------~-------------------- 264 (300)
.+++.+...++ +||+++++.+++.|+++ ..... .
T Consensus 234 ~~~~~~~~~g~----~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (657)
T PRK07201 234 HLMHKDGRDGQ----TFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAVATQLGIPP 309 (657)
T ss_pred HHhcCcCCCCC----EEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHHHHHhcCCCH
Confidence 99886544444 99999999999999887 00000 0
Q ss_pred -----CCCccccChHHHHHhc---CCCcCCHHHHHHHHHhhh
Q 022280 265 -----SPADISMDITKLVQTL---NIDPVTYKDGVKLTLAAE 298 (300)
Q Consensus 265 -----~~~~~~~~~~k~~~~l---g~~p~~~~~~l~~~~~~~ 298 (300)
......+|++++++.| |+.+..+.+.+...+++|
T Consensus 310 ~~l~~~~~~~~f~~~~~~~~L~~~~~~~p~~~~~~~~~~~~~ 351 (657)
T PRK07201 310 EVLDFVNYPTTFDSRETRAALKGSGIEVPRLASYAPRLWDYW 351 (657)
T ss_pred HHHHhccCCCeeccHHHHHHhccCCcCCCChHHHHHHHHHHH
Confidence 0012367889998888 666677888888877655
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=244.61 Aligned_cols=249 Identities=21% Similarity=0.264 Sum_probs=191.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+|+||||||+||||++|++.|.++| ++|.. ..+|++|.+.+...++.. ++|+||
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g---~~v~~---------------------~~~~l~d~~~v~~~i~~~-~pd~Vi 433 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQG---IAYEY---------------------GKGRLEDRSSLLADIRNV-KPTHVF 433 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCC---CeEEe---------------------eccccccHHHHHHHHHhh-CCCEEE
Confidence 45799999999999999999999999 77631 124678888787777766 899999
Q ss_pred EcccccC---ccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCC-------CCCCCCCCCCCCC-Ch
Q 022280 82 NCAALSV---PRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV-------KSFYKEEDEIAPV-NV 150 (300)
Q Consensus 82 h~a~~~~---~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~-------~~~~~E~~~~~p~-~~ 150 (300)
|||+... .+.++.++...+++|+.++. +++++|++.++ +++++||.++|+.. ..+++|++++.|. +.
T Consensus 434 h~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~-~l~~a~~~~g~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~~ 511 (668)
T PLN02260 434 NAAGVTGRPNVDWCESHKVETIRANVVGTL-TLADVCRENGL-LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGSF 511 (668)
T ss_pred ECCcccCCCCCChHHhCHHHHHHHHhHHHH-HHHHHHHHcCC-eEEEEcccceecCCcccccccCCCCCcCCCCCCCCCh
Confidence 9999874 33456688899999999996 99999999999 57888888888642 1278888776654 89
Q ss_pred hHHHHHHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHh
Q 022280 151 YGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 230 (300)
|+.||.++|.+++.+ .++.++|+..+||.+... +. .++..+++..+.+.+. .+..+++|++.+++.+++
T Consensus 512 Yg~sK~~~E~~~~~~-~~~~~~r~~~~~~~~~~~--~~----nfv~~~~~~~~~~~vp----~~~~~~~~~~~~~~~l~~ 580 (668)
T PLN02260 512 YSKTKAMVEELLREY-DNVCTLRVRMPISSDLSN--PR----NFITKISRYNKVVNIP----NSMTVLDELLPISIEMAK 580 (668)
T ss_pred hhHHHHHHHHHHHhh-hhheEEEEEEecccCCCC--cc----HHHHHHhccceeeccC----CCceehhhHHHHHHHHHH
Confidence 999999999999887 567889999999754321 11 3444545344433332 356788999999888886
Q ss_pred ccccccccccceeeecCCCccCHHHHHHhh---c--c----------------CCCCCccccChHHHHHhcCCCcCCHHH
Q 022280 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAEVD---R--G----------------VQSPADISMDITKLVQTLNIDPVTYKD 289 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~---~--~----------------~~~~~~~~~~~~k~~~~lg~~p~~~~~ 289 (300)
... .++||+++++.+|+.|+++.. . + ..++.+ .+|++|+++.+|. +.+|++
T Consensus 581 ~~~------~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l~~~k~~~~~~~-~~~~~~ 652 (668)
T PLN02260 581 RNL------RGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EMDASKLKKEFPE-LLSIKE 652 (668)
T ss_pred hCC------CceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-cccHHHHHHhCcc-ccchHH
Confidence 422 239999999999999998811 1 1 123445 8999999998999 899999
Q ss_pred HHHHHHh
Q 022280 290 GVKLTLA 296 (300)
Q Consensus 290 ~l~~~~~ 296 (300)
+|.+++.
T Consensus 653 ~l~~~~~ 659 (668)
T PLN02260 653 SLIKYVF 659 (668)
T ss_pred HHHHHHh
Confidence 9999875
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=215.15 Aligned_cols=224 Identities=21% Similarity=0.278 Sum_probs=169.6
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----C-Ccee----EEEeecCCchhHHHHHHhcCC
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----P-HSFV----FFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~-~~~~----~~~~D~~~~~~~~~~~~~~~~ 76 (300)
||||||+|.||+.|+++|++.+. .+++++++++.....+..++ + .++. .+.+|++|.+.+..+++.+ +
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p--~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~-~ 77 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP--KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY-K 77 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB---SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT---T
T ss_pred CEEEccccHHHHHHHHHHHhcCC--CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc-C
Confidence 79999999999999999999985 58999999976665555544 2 2343 3578999999999999877 9
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHH
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~ 156 (300)
||+|||.|+.-..+.++.+|.+.+++|+.||. |++++|.+.++++||++||..+.. |.+.||+||.
T Consensus 78 pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~-nv~~aa~~~~v~~~v~ISTDKAv~-------------PtnvmGatKr 143 (293)
T PF02719_consen 78 PDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQ-NVAEAAIEHGVERFVFISTDKAVN-------------PTNVMGATKR 143 (293)
T ss_dssp -SEEEE------HHHHCCCHHHHHHHHCHHHH-HHHHHHHHTT-SEEEEEEECGCSS---------------SHHHHHHH
T ss_pred CCEEEEChhcCCCChHHhCHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEccccccCC-------------CCcHHHHHHH
Confidence 99999999998888889999999999999996 999999999999999999977653 4789999999
Q ss_pred HHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC-cccCceeHHHHHHHHHHH
Q 022280 157 AAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD-ECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 157 ~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~D~a~~~~~~ 228 (300)
.+|.++...+. .++++|+|+|+|..+ ++++ .+.+.+++++++++... -.|=|+.++++++.++.+
T Consensus 144 laE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~G------SVip-~F~~Qi~~g~PlTvT~p~mtRffmti~EAv~Lvl~a 216 (293)
T PF02719_consen 144 LAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRG------SVIP-LFKKQIKNGGPLTVTDPDMTRFFMTIEEAVQLVLQA 216 (293)
T ss_dssp HHHHHHHHHCCTSSSS--EEEEEEE-EETTGTT------SCHH-HHHHHHHTTSSEEECETT-EEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhCCCCCcEEEEEEecceecCCC------cHHH-HHHHHHHcCCcceeCCCCcEEEEecHHHHHHHHHHH
Confidence 99999998765 468999999999653 3344 45556668899999764 567789999999999999
Q ss_pred HhccccccccccceeeecCCCccCHHHHHH
Q 022280 229 TNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
+.... +|+ +|...-|+++++.|+++
T Consensus 217 ~~~~~-~ge----ifvl~mg~~v~I~dlA~ 241 (293)
T PF02719_consen 217 AALAK-GGE----IFVLDMGEPVKILDLAE 241 (293)
T ss_dssp HHH---TTE----EEEE---TCEECCCHHH
T ss_pred HhhCC-CCc----EEEecCCCCcCHHHHHH
Confidence 88743 344 89998889999999998
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=221.87 Aligned_cols=219 Identities=21% Similarity=0.280 Sum_probs=170.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh------hhhhcCCCceeEEEeecCCchhHHHHHHhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ------LLLDALPHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
.+|+|||||||||||++++++|+++| ++|+++.|+.+... .... ...+++++++|++|++++..+++..+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~R~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~ 134 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRG---YNVVAVAREKSGIRGKNGKEDTKK-ELPGAEVVFGDVTDADSLRKVLFSEG 134 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEEechhhccccchhhHHhh-hcCCceEEEeeCCCHHHHHHHHHHhC
Confidence 46899999999999999999999999 89999999864321 1111 12467789999999999998887543
Q ss_pred -CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHH
Q 022280 76 -QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKS 154 (300)
Q Consensus 76 -~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~s 154 (300)
++|+||||++.... .....+++|+.++. ++++++++.++++||++||.+++.+ ...|..+
T Consensus 135 ~~~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~-~ll~aa~~~gv~r~V~iSS~~v~~p-------------~~~~~~s 195 (390)
T PLN02657 135 DPVDVVVSCLASRTG-----GVKDSWKIDYQATK-NSLDAGREVGAKHFVLLSAICVQKP-------------LLEFQRA 195 (390)
T ss_pred CCCcEEEECCccCCC-----CCccchhhHHHHHH-HHHHHHHHcCCCEEEEEeeccccCc-------------chHHHHH
Confidence 69999999874321 12345678888886 9999999999999999999987643 4568999
Q ss_pred HHHHHHHHHH--HcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCc--cc-CceeHHHHHHHHHHHH
Q 022280 155 KVAAEKFIYE--KCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE--CR-CPVYVRDVVKIILALT 229 (300)
Q Consensus 155 K~~~e~~~~~--~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~i~v~D~a~~~~~~~ 229 (300)
|...|+.+++ .+.+++|+||+.+||+.. ..+ ..+..++++.++|++ .+ +++|++|+|++++.++
T Consensus 196 K~~~E~~l~~~~~gl~~tIlRp~~~~~~~~----------~~~-~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~ 264 (390)
T PLN02657 196 KLKFEAELQALDSDFTYSIVRPTAFFKSLG----------GQV-EIVKDGGPYVMFGDGKLCACKPISEADLASFIADCV 264 (390)
T ss_pred HHHHHHHHHhccCCCCEEEEccHHHhcccH----------HHH-HhhccCCceEEecCCcccccCceeHHHHHHHHHHHH
Confidence 9999999876 567899999999997421 122 334466777677764 23 5899999999999999
Q ss_pred hccccccccccceeeecCC-CccCHHHHHH
Q 022280 230 NRWLSEDKQMQLLLNVGGP-DRVSRVQMAE 258 (300)
Q Consensus 230 ~~~~~~~~~~~~i~ni~~~-~~~s~~e~~~ 258 (300)
..+...++ +||++++ +.+|++|+++
T Consensus 265 ~~~~~~~~----~~~Iggp~~~~S~~Eia~ 290 (390)
T PLN02657 265 LDESKINK----VLPIGGPGKALTPLEQGE 290 (390)
T ss_pred hCccccCC----EEEcCCCCcccCHHHHHH
Confidence 76544444 9999986 6899999998
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=214.72 Aligned_cols=243 Identities=21% Similarity=0.201 Sum_probs=171.6
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh---hhhh---cC-------C-CceeEEEeecCCch-----
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ---LLLD---AL-------P-HSFVFFDVDLKSGS----- 65 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~---~~~~---~~-------~-~~~~~~~~D~~~~~----- 65 (300)
+|||||||||||++|+++|+++|+. ++|+++.|+.+... .+.+ .. . .++.++.+|++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~-~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~ 79 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQ-AKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD 79 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCC-CEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence 5899999999999999999999854 57999999865321 1111 10 1 46788899998753
Q ss_pred -hHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCC
Q 022280 66 -GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEED 143 (300)
Q Consensus 66 -~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~ 143 (300)
.+..+. .++|+|||+|+..... .........|+.++. ++++.|.+.++++|+++||.++|+.... ++.|++
T Consensus 80 ~~~~~~~---~~~d~vih~a~~~~~~---~~~~~~~~~nv~g~~-~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~ 152 (367)
T TIGR01746 80 AEWERLA---ENVDTIVHNGALVNWV---YPYSELRAANVLGTR-EVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDD 152 (367)
T ss_pred HHHHHHH---hhCCEEEeCCcEeccC---CcHHHHhhhhhHHHH-HHHHHHhhCCCceEEEEccccccCCcCCCCccccc
Confidence 334333 3899999999976432 234567789999996 9999999988888999999999987443 334443
Q ss_pred CC-----CCCChhHHHHHHHHHHHHHH---cCCceeEeeeeeeCCCCCCCC-CCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 144 EI-----APVNVYGKSKVAAEKFIYEK---CSNFAILRSSIIYGPQTISPV-PKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 144 ~~-----~p~~~Y~~sK~~~e~~~~~~---~~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
+. .+.+.|+.||..+|.+++.. +.+++++||+.++|+...... .......++......+ ..+.......+
T Consensus 153 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~ 231 (367)
T TIGR01746 153 AIVTPPPGLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALG-AYPDSPELTED 231 (367)
T ss_pred cccccccccCCChHHHHHHHHHHHHHHHhcCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhC-CCCCCCccccC
Confidence 32 23468999999999999876 457899999999997432211 1122222333333222 11111123578
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
|+|++|++++++.++...... ..+++||+++++.+++.|+++
T Consensus 232 ~~~vddva~ai~~~~~~~~~~--~~~~~~~v~~~~~~s~~e~~~ 273 (367)
T TIGR01746 232 LTPVDYVARAIVALSSQPAAS--AGGPVFHVVNPEPVSLDEFLE 273 (367)
T ss_pred cccHHHHHHHHHHHHhCCCcc--cCCceEEecCCCCCCHHHHHH
Confidence 999999999999998775431 013399999999999999988
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=214.77 Aligned_cols=228 Identities=20% Similarity=0.287 Sum_probs=192.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CC-CceeEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LP-HSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
.+|+||||||+|-||+.+|+++++.+. -++++.+|++-+......+ ++ ..+.++.+|+.|.+.+..+++.+ +
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p--~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~-k 325 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNP--KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH-K 325 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCC--CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC-C
Confidence 579999999999999999999999986 5788888886554433322 22 46778999999999999999977 8
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHH
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~ 156 (300)
||+|||+|+.-..+.++.+|.+.+.+|+.||. |++++|.+.++++||.+||..+. +|.+.||+||.
T Consensus 326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~-nv~~aa~~~~V~~~V~iSTDKAV-------------~PtNvmGaTKr 391 (588)
T COG1086 326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTE-NVAEAAIKNGVKKFVLISTDKAV-------------NPTNVMGATKR 391 (588)
T ss_pred CceEEEhhhhccCcchhcCHHHHHHHhhHhHH-HHHHHHHHhCCCEEEEEecCccc-------------CCchHhhHHHH
Confidence 99999999999888899999999999999996 99999999999999999997654 45789999999
Q ss_pred HHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC-cccCceeHHHHHHHHHHH
Q 022280 157 AAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD-ECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 157 ~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~D~a~~~~~~ 228 (300)
.+|.++.+++. .++++|+|+|.|..+ +.++ ++.+.+++++++++..- -.|=|+.+.|.++.++.+
T Consensus 392 ~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG------SViP-lFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlqA 464 (588)
T COG1086 392 LAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG------SVIP-LFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQA 464 (588)
T ss_pred HHHHHHHHHhhccCCCCcEEEEEEecceecCCC------CCHH-HHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHHH
Confidence 99999987743 478999999999754 2233 46666778899998864 457789999999999999
Q ss_pred HhccccccccccceeeecCCCccCHHHHHH
Q 022280 229 TNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
.... .+|+ +|-+.-|+++++.|+++
T Consensus 465 ~a~~-~gGe----ifvldMGepvkI~dLAk 489 (588)
T COG1086 465 GAIA-KGGE----IFVLDMGEPVKIIDLAK 489 (588)
T ss_pred Hhhc-CCCc----EEEEcCCCCeEHHHHHH
Confidence 8873 3444 99999999999999998
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-28 Score=191.38 Aligned_cols=284 Identities=18% Similarity=0.167 Sum_probs=215.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch-hhhhhcC--------CCceeEEEeecCCchhHHHHHHh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-QLLLDAL--------PHSFVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~ 73 (300)
.|..||||-||.=|+.|++.|+.+| |+|++..|+.+.. ....+.+ +.....+.+|++|...+..++..
T Consensus 28 rkvALITGItGQDGSYLaEfLL~Kg---YeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ 104 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKG---YEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLIST 104 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCC---ceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhc
Confidence 3578999999999999999999999 9999999985432 1112211 34566789999999988888887
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC---CeEEEeeccccccCCCC-CCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE---NLLIHLSTDQVYEGVKS-FYKEEDEIAPVN 149 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~---~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~ 149 (300)
. +|+-|+|+|+......+.+-|+.+.++...|++ .++++.+..+. -||...||...||...+ |-.|.+|..|.+
T Consensus 105 i-kPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtL-RlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPFyPRS 182 (376)
T KOG1372|consen 105 I-KPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTL-RLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPFYPRS 182 (376)
T ss_pred c-CchhhhhhhhhcceEEEeecccceeeccchhhh-hHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCCCCCC
Confidence 7 999999999999888788888889999999998 99988776432 28999999999998776 899999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCc-eeEeeeeeeCCCCCCCCCCCchHHHH---HHHHhcCCceeeccC--cccCceeHHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCSNF-AILRSSIIYGPQTISPVPKSLPIQWI---DSVLSKGEKVEFFHD--ECRCPVYVRDVVK 223 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~~~-~ilR~~~v~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~i~v~D~a~ 223 (300)
+|+.+|...-.++..+..-+ .....|+.|-...+.........++. ..+..+...-...|+ ..|||-|..|-++
T Consensus 183 PYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dYVE 262 (376)
T KOG1372|consen 183 PYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAGDYVE 262 (376)
T ss_pred hhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhHHHHH
Confidence 99999998877665554433 23344666655433322222111222 222222222233343 6899999999999
Q ss_pred HHHHHHhccccccccccceeeecCCCccCHHHHHH-------------------------------hhccCCCCC---cc
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-------------------------------VDRGVQSPA---DI 269 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-------------------------------~~~~~~~~~---~~ 269 (300)
+++.+++++.++ -|-|.+|+..|++|+.+ +..++.+|. .+
T Consensus 263 AMW~mLQ~d~Pd------DfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd~L 336 (376)
T KOG1372|consen 263 AMWLMLQQDSPD------DFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVDTL 336 (376)
T ss_pred HHHHHHhcCCCC------ceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccCcchhhhh
Confidence 999999998776 48999999999999988 122233332 24
Q ss_pred ccChHHHHHhcCCCc-CCHHHHHHHHHhh
Q 022280 270 SMDITKLVQTLNIDP-VTYKDGVKLTLAA 297 (300)
Q Consensus 270 ~~~~~k~~~~lg~~p-~~~~~~l~~~~~~ 297 (300)
..|.+|+++.|||+| ..+.+.+++|+..
T Consensus 337 qGdasKAk~~LgW~pkv~f~eLVkeMv~~ 365 (376)
T KOG1372|consen 337 QGDASKAKKTLGWKPKVTFPELVKEMVAS 365 (376)
T ss_pred cCChHHHHHhhCCCCccCHHHHHHHHHHh
Confidence 579999999999999 9999999999865
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=216.58 Aligned_cols=243 Identities=19% Similarity=0.148 Sum_probs=171.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch---hhhhhc-------------C--------CCceeEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP---QLLLDA-------------L--------PHSFVFF 57 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~---~~~~~~-------------~--------~~~~~~~ 57 (300)
.+|+|||||||||||++|+++|++.+.++-+|+++.|..+.. +.+... . ..++..+
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 578999999999999999999999875545789999975422 111100 0 2457789
Q ss_pred EeecCCch------hHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhc-cCCeEEEeeccc
Q 022280 58 DVDLKSGS------GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQ 130 (300)
Q Consensus 58 ~~D~~~~~------~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~ 130 (300)
.+|+++++ ..+.+.+ ++|+|||+|+..... .+++..+++|+.|+. ++++.|++. +.++|||+||..
T Consensus 198 ~GDl~d~~LGLs~~~~~~L~~---~vDiVIH~AA~v~f~---~~~~~a~~vNV~GT~-nLLelA~~~~~lk~fV~vSTay 270 (605)
T PLN02503 198 VGNVCESNLGLEPDLADEIAK---EVDVIINSAANTTFD---ERYDVAIDINTRGPC-HLMSFAKKCKKLKLFLQVSTAY 270 (605)
T ss_pred EeeCCCcccCCCHHHHHHHHh---cCCEEEECccccccc---cCHHHHHHHHHHHHH-HHHHHHHHcCCCCeEEEccCce
Confidence 99999973 3444444 799999999987543 467888999999996 999999875 568999999999
Q ss_pred cccCCCCCCCCCCCC----------------------------------------------------------C-CCChh
Q 022280 131 VYEGVKSFYKEEDEI----------------------------------------------------------A-PVNVY 151 (300)
Q Consensus 131 ~~~~~~~~~~E~~~~----------------------------------------------------------~-p~~~Y 151 (300)
+||...+.+.|...+ . -.+.|
T Consensus 271 VyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtY 350 (605)
T PLN02503 271 VNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTY 350 (605)
T ss_pred eecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChH
Confidence 999875444442211 0 12689
Q ss_pred HHHHHHHHHHHHHHcC--CceeEeeeeeeC----------CCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCcee
Q 022280 152 GKSKVAAEKFIYEKCS--NFAILRSSIIYG----------PQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVY 217 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~--~~~ilR~~~v~G----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~ 217 (300)
..+|..+|+++++... +++|+||++|.+ ++..... + .+... ..+....+.++ ...|+++
T Consensus 351 t~TK~lAE~lV~~~~~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~----p--~~~~~-g~G~lr~~~~~~~~~~DiVP 423 (605)
T PLN02503 351 VFTKAMGEMVINSMRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMD----P--IVLYY-GKGQLTGFLADPNGVLDVVP 423 (605)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEcCCEecccccCCccccccCccccc----h--hhhhe-eccceeEEEeCCCeeEeEEe
Confidence 9999999999998754 789999999933 3211111 1 11111 12222223443 5789999
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCC--CccCHHHHHH
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGP--DRVSRVQMAE 258 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~--~~~s~~e~~~ 258 (300)
||.++.+++.++............+||++++ .++++.++.+
T Consensus 424 VD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~ 466 (605)
T PLN02503 424 ADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLAR 466 (605)
T ss_pred ecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHH
Confidence 9999999998854311111112459999988 7899999988
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-26 Score=185.05 Aligned_cols=262 Identities=18% Similarity=0.182 Sum_probs=177.5
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEccc
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAA 85 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a~ 85 (300)
|+|||||||||++|+..|.+.| ++|+++.|++.+...... ..+ ..-+.+...... ++|+|||+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~g---h~v~iltR~~~~~~~~~~---~~v-------~~~~~~~~~~~~--~~DavINLAG 65 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGG---HQVTILTRRPPKASQNLH---PNV-------TLWEGLADALTL--GIDAVINLAG 65 (297)
T ss_pred CeEeccccchhHHHHHHHHhCC---CeEEEEEcCCcchhhhcC---ccc-------cccchhhhcccC--CCCEEEECCC
Confidence 6899999999999999999999 789999999776543321 111 111222333221 6999999999
Q ss_pred ccCcc--ccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHH
Q 022280 86 LSVPR--VCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
..... ++....+...+.-+..|- .+.+...+ .+++.+|..|.+..||...+ .++|++++ ....-+..-..-|+
T Consensus 66 ~~I~~rrWt~~~K~~i~~SRi~~T~-~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~-g~~Fla~lc~~WE~ 143 (297)
T COG1090 66 EPIAERRWTEKQKEEIRQSRINTTE-KLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPP-GDDFLAQLCQDWEE 143 (297)
T ss_pred CccccccCCHHHHHHHHHHHhHHHH-HHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCC-CCChHHHHHHHHHH
Confidence 76543 455556677888888884 77777774 45556666677788999877 88998554 34444555555666
Q ss_pred HHHHH---cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccc
Q 022280 161 FIYEK---CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDK 237 (300)
Q Consensus 161 ~~~~~---~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 237 (300)
...+. +.+++++|.++|.|+.... .+...++ . +.. -+.+ .-.|.|..+|||++|+++++.+++++....|
T Consensus 144 ~a~~a~~~gtRvvllRtGvVLs~~GGa-L~~m~~~--f-k~g-lGG~-~GsGrQ~~SWIhieD~v~~I~fll~~~~lsG- 216 (297)
T COG1090 144 EALQAQQLGTRVVLLRTGVVLSPDGGA-LGKMLPL--F-KLG-LGGK-LGSGRQWFSWIHIEDLVNAILFLLENEQLSG- 216 (297)
T ss_pred HHhhhhhcCceEEEEEEEEEecCCCcc-hhhhcch--h-hhc-cCCc-cCCCCceeeeeeHHHHHHHHHHHHhCcCCCC-
Confidence 55443 4489999999999986421 1111111 0 000 0111 1123478899999999999999999966655
Q ss_pred cccceeeecCCCccCHHHHHH-----hhccCCC------------------CCccccChHHHHHhcCCCc--CCHHHHHH
Q 022280 238 QMQLLLNVGGPDRVSRVQMAE-----VDRGVQS------------------PADISMDITKLVQTLNIDP--VTYKDGVK 292 (300)
Q Consensus 238 ~~~~i~ni~~~~~~s~~e~~~-----~~~~~~~------------------~~~~~~~~~k~~~~lg~~p--~~~~~~l~ 292 (300)
.||+.++.+++..++.. +.+.... ......-++|+ ...||++ .+++++|.
T Consensus 217 ----p~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl-~~aGF~F~y~dl~~AL~ 291 (297)
T COG1090 217 ----PFNLTAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQRVLPKKL-EAAGFQFQYPDLEEALA 291 (297)
T ss_pred ----cccccCCCcCcHHHHHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccchhhHHHH-HHCCCeeecCCHHHHHH
Confidence 79999999999999988 1111110 01233455676 4479998 69999999
Q ss_pred HHHh
Q 022280 293 LTLA 296 (300)
Q Consensus 293 ~~~~ 296 (300)
+.+.
T Consensus 292 ~il~ 295 (297)
T COG1090 292 DILK 295 (297)
T ss_pred HHHh
Confidence 8875
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=213.16 Aligned_cols=228 Identities=14% Similarity=0.152 Sum_probs=161.9
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+||||||+||||++|++.|+++| ++|++++|.+... ....++++++|++++. +.+.+. ++|+|||+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr~~~~~------~~~~ve~v~~Dl~d~~-l~~al~---~~D~VIHL 67 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQHPHDA------LDPRVDYVCASLRNPV-LQELAG---EADAVIHL 67 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeCChhhc------ccCCceEEEccCCCHH-HHHHhc---CCCEEEEc
Confidence 589999999999999999999999 8999999864321 1235678899999974 554444 89999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY 163 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~ 163 (300)
|+.... . ...+|+.++. +++++|++.++ ++||+||. +|.. ..|. ..|.++.
T Consensus 68 Aa~~~~-----~---~~~vNv~Gt~-nLleAA~~~Gv-RiV~~SS~--~G~~-------------~~~~----~aE~ll~ 118 (699)
T PRK12320 68 APVDTS-----A---PGGVGITGLA-HVANAAARAGA-RLLFVSQA--AGRP-------------ELYR----QAETLVS 118 (699)
T ss_pred CccCcc-----c---hhhHHHHHHH-HHHHHHHHcCC-eEEEEECC--CCCC-------------cccc----HHHHHHH
Confidence 986321 1 1257899996 99999999998 79999986 3321 1132 4777777
Q ss_pred HHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccccccccccee
Q 022280 164 EKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243 (300)
Q Consensus 164 ~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ 243 (300)
.+..+++++|++++|||+..... ..++..++...+ .++++. ++|++|++++++.+++.+. .++|
T Consensus 119 ~~~~p~~ILR~~nVYGp~~~~~~-~r~I~~~l~~~~-~~~pI~--------vIyVdDvv~alv~al~~~~------~Giy 182 (699)
T PRK12320 119 TGWAPSLVIRIAPPVGRQLDWMV-CRTVATLLRSKV-SARPIR--------VLHLDDLVRFLVLALNTDR------NGVV 182 (699)
T ss_pred hcCCCEEEEeCceecCCCCcccH-hHHHHHHHHHHH-cCCceE--------EEEHHHHHHHHHHHHhCCC------CCEE
Confidence 77789999999999999643211 122233333222 233333 4899999999999997632 2399
Q ss_pred eecCCCccCHHHHHHhhcc---------CCCCCccccChHHHHHhcCCCc-CCHHH
Q 022280 244 NVGGPDRVSRVQMAEVDRG---------VQSPADISMDITKLVQTLNIDP-VTYKD 289 (300)
Q Consensus 244 ni~~~~~~s~~e~~~~~~~---------~~~~~~~~~~~~k~~~~lg~~p-~~~~~ 289 (300)
|+++++.+|++|+.+.... ...+.....|.+..+..++|.| .+|+.
T Consensus 183 NIG~~~~~Si~el~~~i~~~~p~~~~~~~~~~~~~~pdi~~a~~~~~w~~~~~~~~ 238 (699)
T PRK12320 183 DLATPDTTNVVTAWRLLRSVDPHLRTRRVRSWEQLIPEVDIAAVQEDWNFEFGWQA 238 (699)
T ss_pred EEeCCCeeEHHHHHHHHHHhCCCccccccccHHHhCCCCchhhhhcCCCCcchHHH
Confidence 9999999999998882111 1112224467777778889999 66654
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=194.99 Aligned_cols=229 Identities=16% Similarity=0.203 Sum_probs=164.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~d 78 (300)
.|++|||||+|+||++++++|+++| ++|+++.|+++....+....+..+.++++|++|.+++..+++ .++++|
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARG---DRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRID 78 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 5789999999999999999999999 899999998766655555555678889999999988776654 356899
Q ss_pred EEEEcccccCcccc----ccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 79 VVVNCAALSVPRVC----ENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 79 ~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
+||||||....... .+.++..+++|+.++. ++++++ ++.+.++||++||.....+.+ +.+.
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------~~~~ 147 (276)
T PRK06482 79 VVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSI-QVIRAALPHLRRQGGGRIVQVSSEGGQIAYP----------GFSL 147 (276)
T ss_pred EEEECCCCCCCcccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCEEEEEcCcccccCCC----------CCch
Confidence 99999998654322 2335677889999996 888886 556778999999976543322 3678
Q ss_pred hHHHHHHHHHHHHHHc-------CCceeEeeeee---eCCCCCCCCC----CCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 151 YGKSKVAAEKFIYEKC-------SNFAILRSSII---YGPQTISPVP----KSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v---~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
|+.||.+.|.+++.+. .+++++||+.+ ||++.....+ ...+...+...+.. ..+. -+.
T Consensus 148 Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~ 219 (276)
T PRK06482 148 YHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALAD-GSFA-------IPG 219 (276)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhh-ccCC-------CCC
Confidence 9999999998887653 36788999987 6654321110 11111222222211 1111 146
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
+++|++++++.+++.+... . .||+++++..++.|+..
T Consensus 220 d~~~~~~a~~~~~~~~~~~-~----~~~~g~~~~~~~~~~~~ 256 (276)
T PRK06482 220 DPQKMVQAMIASADQTPAP-R----RLTLGSDAYASIRAALS 256 (276)
T ss_pred CHHHHHHHHHHHHcCCCCC-e----EEecChHHHHHHHHHHH
Confidence 7999999999999865332 2 69999998888887665
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=188.93 Aligned_cols=210 Identities=23% Similarity=0.226 Sum_probs=128.6
Q ss_pred EEcCCccchHHHHHhhhhccCCCceeeecCCCCCc---hhhhhhc-------------CCCceeEEEeecCCch------
Q 022280 8 VVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL---PQLLLDA-------------LPHSFVFFDVDLKSGS------ 65 (300)
Q Consensus 8 ItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~---~~~~~~~-------------~~~~~~~~~~D~~~~~------ 65 (300)
|||||||||++|+++|++++.. .+|+++.|+.+. .+.+.+. ..++++++.+|++++.
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~-~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPD-VKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-T-TEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred CcCCCcHHHHHHHHHHHcCCCC-cEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence 7999999999999999999843 289999998643 1222111 1568899999999865
Q ss_pred hHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCC---
Q 022280 66 GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEE--- 142 (300)
Q Consensus 66 ~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~--- 142 (300)
.+..+.+ .+|+|||||+...... ..++..++|+.|+. ++++.|.+.+.++|+|+||..+.+.....+.|.
T Consensus 80 ~~~~L~~---~v~~IiH~Aa~v~~~~---~~~~~~~~NV~gt~-~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~ 152 (249)
T PF07993_consen 80 DYQELAE---EVDVIIHCAASVNFNA---PYSELRAVNVDGTR-NLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYP 152 (249)
T ss_dssp HHHHHHH---H--EEEE--SS-SBS----S--EEHHHHHHHHH-HHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-H
T ss_pred Hhhcccc---ccceeeecchhhhhcc---cchhhhhhHHHHHH-HHHHHHHhccCcceEEeccccccCCCCCcccccccc
Confidence 3444544 7999999999876532 44567899999996 999999976667999999965655554433221
Q ss_pred -------CCCCCCChhHHHHHHHHHHHHHHc----CCceeEeeeeeeCCCCCCCC-CCCchHHHHHHHHhcCCceeeccC
Q 022280 143 -------DEIAPVNVYGKSKVAAEKFIYEKC----SNFAILRSSIIYGPQTISPV-PKSLPIQWIDSVLSKGEKVEFFHD 210 (300)
Q Consensus 143 -------~~~~p~~~Y~~sK~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
......+.|..||..+|+++++.. .+++|+||+.|+|....... .......++...+..+......+.
T Consensus 153 ~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~ 232 (249)
T PF07993_consen 153 EEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGD 232 (249)
T ss_dssp HH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB-
T ss_pred cccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCC
Confidence 122345699999999999998764 58999999999995433222 222234445555544444334443
Q ss_pred --cccCceeHHHHHHHH
Q 022280 211 --ECRCPVYVRDVVKII 225 (300)
Q Consensus 211 --~~~~~i~v~D~a~~~ 225 (300)
...++++|+.+|++|
T Consensus 233 ~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 233 PDARLDLVPVDYVARAI 249 (249)
T ss_dssp --TT--EEEHHHHHHHH
T ss_pred CCceEeEECHHHHHhhC
Confidence 468999999999975
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=188.56 Aligned_cols=227 Identities=15% Similarity=0.120 Sum_probs=157.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
+++++|||||+|+||+++++.|+++| ++|++.+|+++......+. .+..+.++++|++|.+++..+++. +
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAG---AAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999 8999999987655444433 244567789999999987766553 4
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccch---HHHHHhh-hhccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSL---VNWLSSF-TENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~---~~l~~~~-~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+||||||...... ..+.++..+++|+.+++ ..+++.+ ++.+.++||++||...+...+
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~~---------- 152 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASP---------- 152 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCCC----------
Confidence 67999999999764322 22335677889999853 2566666 566778999999976543322
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCC------chHHHHHHHHhcCCceeeccCccc
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKS------LPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
+...|+.+|.+.+.+++.++ .+++++||+.++++......+.. .........+ ..+...+
T Consensus 153 ~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 225 (262)
T PRK13394 153 LKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVM-------LGKTVDG 225 (262)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHH-------hcCCCCC
Confidence 25689999999998887664 35688999999987532111000 0001111111 0123457
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+|++++|++++++++++..... ..++.|+++++..
T Consensus 226 ~~~~~~dva~a~~~l~~~~~~~--~~g~~~~~~~g~~ 260 (262)
T PRK13394 226 VFTTVEDVAQTVLFLSSFPSAA--LTGQSFVVSHGWF 260 (262)
T ss_pred CCCCHHHHHHHHHHHcCccccC--CcCCEEeeCCcee
Confidence 8999999999999999865322 1133899988743
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=189.75 Aligned_cols=236 Identities=16% Similarity=0.133 Sum_probs=165.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~ 76 (300)
|++++||||||+|+||++++++|+++| ++|++++|+++....+.+..+..+.++++|++|.+++...++. +++
T Consensus 1 ~~~k~vlItGasg~iG~~~a~~l~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 1 MMEKVWFITGASRGFGRAWTEAALERG---DRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 677899999999999999999999999 8999999987666555555556677889999999887666553 468
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+||||||...... ..+.++..+++|+.+++ .+++.+ ++.+.+++|++||...+.+... .
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~----------~ 146 (275)
T PRK08263 78 LDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGAL-WVTQAVLPYLREQRSGHIIQISSIGGISAFPM----------S 146 (275)
T ss_pred CCEEEECCCCccccccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCEEEEEcChhhcCCCCC----------c
Confidence 999999999764322 23456788999999985 666654 5566789999999887766544 5
Q ss_pred ChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc-eeHHH
Q 022280 149 NVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP-VYVRD 220 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~D 220 (300)
..|+.+|.+.+.+++.+. .++.++||+.+..+................... . . .......+.+ ++++|
T Consensus 147 ~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~p~d 222 (275)
T PRK08263 147 GIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLR-E-E--LAEQWSERSVDGDPEA 222 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHH-H-H--HHHHHHhccCCCCHHH
Confidence 789999999998886553 467889998887653211100000000000000 0 0 0000123346 88999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCccCHHHHHH
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
++++++.+++.+...++ .|+..++..+++.++.+
T Consensus 223 va~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~ 256 (275)
T PRK08263 223 AAEALLKLVDAENPPLR----LFLGSGVLDLAKADYER 256 (275)
T ss_pred HHHHHHHHHcCCCCCeE----EEeCchHHHHHHHHHHH
Confidence 99999999998655443 55555556777777765
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=189.22 Aligned_cols=240 Identities=14% Similarity=0.106 Sum_probs=166.3
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH---hcCC-CCEE
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL---KFGQ-PDVV 80 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~~~-~d~v 80 (300)
+||||||||++|++++++|+++| ++|+++.|+++... ..++..+.+|+.|++++...++ .+.+ +|.|
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~R~~~~~~------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v 71 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVASRSSSSSA------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAV 71 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEeCCCcccc------CCCCccccccCCCHHHHHHHHhcccCcCCceeEE
Confidence 48999999999999999999999 89999999876432 1245557899999999888873 1226 9999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
+|+++... +. .... .+++++|++.|++|||++||..++... ..+...|+
T Consensus 72 ~~~~~~~~--------~~-----~~~~-~~~i~aa~~~gv~~~V~~Ss~~~~~~~-----------------~~~~~~~~ 120 (285)
T TIGR03649 72 YLVAPPIP--------DL-----APPM-IKFIDFARSKGVRRFVLLSASIIEKGG-----------------PAMGQVHA 120 (285)
T ss_pred EEeCCCCC--------Ch-----hHHH-HHHHHHHHHcCCCEEEEeeccccCCCC-----------------chHHHHHH
Confidence 99976321 00 0111 388999999999999999986553211 12344567
Q ss_pred HHHHH-cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCcee-eccCcccCceeHHHHHHHHHHHHhcccccccc
Q 022280 161 FIYEK-CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVE-FFHDECRCPVYVRDVVKIILALTNRWLSEDKQ 238 (300)
Q Consensus 161 ~~~~~-~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~ 238 (300)
.+++. +.+++++||+.+++.... + +....+.....+. ..|++..+|++++|+++++..++..+...++
T Consensus 121 ~l~~~~gi~~tilRp~~f~~~~~~---~------~~~~~~~~~~~~~~~~g~~~~~~v~~~Dva~~~~~~l~~~~~~~~- 190 (285)
T TIGR03649 121 HLDSLGGVEYTVLRPTWFMENFSE---E------FHVEAIRKENKIYSATGDGKIPFVSADDIARVAYRALTDKVAPNT- 190 (285)
T ss_pred HHHhccCCCEEEEeccHHhhhhcc---c------ccccccccCCeEEecCCCCccCcccHHHHHHHHHHHhcCCCcCCC-
Confidence 77775 789999999988854210 0 0001111222232 2356788999999999999999987544333
Q ss_pred ccceeeecCCCccCHHHHHHhh-----c-----------------cCCCC----------------CccccChHHHHHhc
Q 022280 239 MQLLLNVGGPDRVSRVQMAEVD-----R-----------------GVQSP----------------ADISMDITKLVQTL 280 (300)
Q Consensus 239 ~~~i~ni~~~~~~s~~e~~~~~-----~-----------------~~~~~----------------~~~~~~~~k~~~~l 280 (300)
+|++.+++.+|+.|+++.. . ....+ ......++..++.+
T Consensus 191 ---~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 267 (285)
T TIGR03649 191 ---DYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPEDLARMLASLDTAVKNGAEVRLNDVVKAVT 267 (285)
T ss_pred ---eEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCccccccchHHHHh
Confidence 8999999999999999800 0 00000 00111355566779
Q ss_pred CCCcCCHHHHHHHHHhh
Q 022280 281 NIDPVTYKDGVKLTLAA 297 (300)
Q Consensus 281 g~~p~~~~~~l~~~~~~ 297 (300)
|.+|+++++.+++..+.
T Consensus 268 G~~p~~~~~~~~~~~~~ 284 (285)
T TIGR03649 268 GSKPRGFRDFAESNKAL 284 (285)
T ss_pred CcCCccHHHHHHHhhhc
Confidence 99999999999887543
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=175.85 Aligned_cols=221 Identities=24% Similarity=0.272 Sum_probs=178.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC--CceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
-.+-|.|||||+|+.++.+|.+.| ..|++..|..+....-.+.++ +.+-+...|+.|+++++.+.+ .-++||
T Consensus 62 iVaTVFGAtGFlGryvvnklak~G---SQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk---~sNVVI 135 (391)
T KOG2865|consen 62 IVATVFGATGFLGRYVVNKLAKMG---SQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVK---HSNVVI 135 (391)
T ss_pred eEEEEecccccccHHHHHHHhhcC---CeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHH---hCcEEE
Confidence 356788999999999999999999 999999997543322222222 346678999999999999998 779999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
|+.|- ..+...-...++|+.++- .++..|++.|+.||||+|+...- ..+ .+-|-.||.+.|..
T Consensus 136 NLIGr----d~eTknf~f~Dvn~~~ae-rlAricke~GVerfIhvS~Lgan--v~s----------~Sr~LrsK~~gE~a 198 (391)
T KOG2865|consen 136 NLIGR----DYETKNFSFEDVNVHIAE-RLARICKEAGVERFIHVSCLGAN--VKS----------PSRMLRSKAAGEEA 198 (391)
T ss_pred Eeecc----ccccCCcccccccchHHH-HHHHHHHhhChhheeehhhcccc--ccC----------hHHHHHhhhhhHHH
Confidence 99883 233344556789999984 99999999999999999997732 112 56788999999999
Q ss_pred HHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCc---ccCceeHHHHHHHHHHHHhcccccccc
Q 022280 162 IYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE---CRCPVYVRDVVKIILALTNRWLSEDKQ 238 (300)
Q Consensus 162 ~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~D~a~~~~~~~~~~~~~~~~ 238 (300)
++..-++.+|+||..|||..+. +..+.....++-+.+++++.+ ...+++|.|+|++|+.++..+.+.|.
T Consensus 199 VrdafPeAtIirPa~iyG~eDr-------fln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s~Gk- 270 (391)
T KOG2865|consen 199 VRDAFPEATIIRPADIYGTEDR-------FLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDSMGK- 270 (391)
T ss_pred HHhhCCcceeechhhhcccchh-------HHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhccCccccCc-
Confidence 9999999999999999998653 123344555556777777653 57899999999999999999877766
Q ss_pred ccceeeecCCCccCHHHHHH
Q 022280 239 MQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 239 ~~~i~ni~~~~~~s~~e~~~ 258 (300)
+|-++++..+.+.|+++
T Consensus 271 ---tye~vGP~~yql~eLvd 287 (391)
T KOG2865|consen 271 ---TYEFVGPDRYQLSELVD 287 (391)
T ss_pred ---eeeecCCchhhHHHHHH
Confidence 99999999999999998
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=182.07 Aligned_cols=224 Identities=16% Similarity=0.154 Sum_probs=156.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCc-hhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG-SGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~d~v 80 (300)
.+|+||||||||+||++++++|+++| ++|+++.|+++........ ...+.++++|+++. +++...+. .++|+|
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~l~~~~~--~~~d~v 89 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKG---FAVKAGVRDVDKAKTSLPQ-DPSLQIVRADVTEGSDKLVEAIG--DDSDAV 89 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCC---CEEEEEecCHHHHHHhccc-CCceEEEEeeCCCCHHHHHHHhh--cCCCEE
Confidence 36899999999999999999999999 8999999986554333221 23577889999984 33333331 389999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCC-CCCCChhHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDE-IAPVNVYGKSKVAA 158 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~-~~p~~~Y~~sK~~~ 158 (300)
||+++..... ++...+++|..++. ++++++.+.++++||++||..+|+.... +.++... .++...|..+|...
T Consensus 90 i~~~g~~~~~----~~~~~~~~n~~~~~-~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~k~~~ 164 (251)
T PLN00141 90 ICATGFRRSF----DPFAPWKVDNFGTV-NLVEACRKAGVTRFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVAKLQA 164 (251)
T ss_pred EECCCCCcCC----CCCCceeeehHHHH-HHHHHHHHcCCCEEEEEccccccCCCcccccCcchhHHHHHHHHHHHHHHH
Confidence 9998864211 23334678888885 9999999999999999999999986432 2222111 11223345679999
Q ss_pred HHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC-cccCceeHHHHHHHHHHHHhccccccc
Q 022280 159 EKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD-ECRCPVYVRDVVKIILALTNRWLSEDK 237 (300)
Q Consensus 159 e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~D~a~~~~~~~~~~~~~~~ 237 (300)
|+++++.+.+++++||+.+++..... ......+. ....+++.+|+|+++..++..+...+.
T Consensus 165 e~~l~~~gi~~~iirpg~~~~~~~~~------------------~~~~~~~~~~~~~~i~~~dvA~~~~~~~~~~~~~~~ 226 (251)
T PLN00141 165 EKYIRKSGINYTIVRPGGLTNDPPTG------------------NIVMEPEDTLYEGSISRDQVAEVAVEALLCPESSYK 226 (251)
T ss_pred HHHHHhcCCcEEEEECCCccCCCCCc------------------eEEECCCCccccCcccHHHHHHHHHHHhcChhhcCc
Confidence 99998888999999999999753211 00000111 123579999999999999988655443
Q ss_pred cccceeeecC---CCccCHHHHHH
Q 022280 238 QMQLLLNVGG---PDRVSRVQMAE 258 (300)
Q Consensus 238 ~~~~i~ni~~---~~~~s~~e~~~ 258 (300)
++.+.+ +...+++++..
T Consensus 227 ----~~~~~~~~~~~~~~~~~~~~ 246 (251)
T PLN00141 227 ----VVEIVARADAPKRSYKDLFA 246 (251)
T ss_pred ----EEEEecCCCCCchhHHHHHH
Confidence 666665 33578888764
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=180.50 Aligned_cols=222 Identities=15% Similarity=0.179 Sum_probs=157.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch-hhhh---hcCCCceeEEEeecCCchhHHHHHHh---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-QLLL---DALPHSFVFFDVDLKSGSGFDAVALK--- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~--- 73 (300)
|++|+||||||||+||++|+++|+++| ++|+++.|+.... ..+. ...+.++.++++|++|++++..+++.
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAG---ADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVE 80 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHH
Confidence 356799999999999999999999999 7888777764432 2221 22245677899999999987776654
Q ss_pred -cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 -FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 -~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+|||+||...... ..+.+...+++|+.+++ ++++.+ ++.+.+++|++||...+.+...
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~~------- 152 (249)
T PRK12825 81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVF-HLLRAVVPPMRKQRGGRIVNISSVAGLPGWPG------- 152 (249)
T ss_pred HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCEEEEECccccCCCCCC-------
Confidence 368999999999654432 23345677899999986 777776 4567789999999887755433
Q ss_pred CCCCChhHHHHHHHHHHHHHH-------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEK-------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~-------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.+|.+.+.+++.+ +.+++++||+.++|+...... ...... . .+ ......+++
T Consensus 153 ---~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~----~~~~~~----~-~~----~~~~~~~~~ 216 (249)
T PRK12825 153 ---RSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATI----EEAREA----K-DA----ETPLGRSGT 216 (249)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCcccccc----chhHHh----h-hc----cCCCCCCcC
Confidence 678999999998887654 346789999999998643211 111111 0 00 112334899
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
++|+++++.++++.... ...+.+|+++++..+
T Consensus 217 ~~dva~~~~~~~~~~~~--~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 217 PEDIARAVAFLCSDASD--YITGQVIEVTGGVDV 248 (249)
T ss_pred HHHHHHHHHHHhCcccc--CcCCCEEEeCCCEee
Confidence 99999999999976422 122449999987543
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=179.61 Aligned_cols=222 Identities=13% Similarity=0.070 Sum_probs=157.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
|++|+||||||+|+||.++++.|+++| ++|++++|+.++....... .+..+.++.+|++|.+++...++.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADG---AEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356799999999999999999999999 8999999986544433322 234577889999999887776653
Q ss_pred cCCCCEEEEcccccCc----cccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccc-cCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP----RVCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVY-EGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~----~~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~-~~~~~~~~E~~~ 144 (300)
++++|+|||+++.... ....+.+...++.|+.++. ++++.+. +.+.++||++||...+ .+.+
T Consensus 81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~-------- 151 (251)
T PRK12826 81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTF-LLTQAALPALIRAGGGRIVLTSSVAGPRVGYP-------- 151 (251)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCcEEEEEechHhhccCCC--------
Confidence 4589999999987654 2223345678899999986 7777663 4567799999998776 2222
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
+...|+.+|.+++.+++.+. .++.++||+.++|+......+. ..........+ ...+++
T Consensus 152 --~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~-----~~~~~~~~~~~-------~~~~~~ 217 (251)
T PRK12826 152 --GLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDA-----QWAEAIAAAIP-------LGRLGE 217 (251)
T ss_pred --CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCch-----HHHHHHHhcCC-------CCCCcC
Confidence 25689999999998887653 3678899999999864221111 11111111111 225889
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++|+++++..++...... ..+.+|++.+|..
T Consensus 218 ~~dva~~~~~l~~~~~~~--~~g~~~~~~~g~~ 248 (251)
T PRK12826 218 PEDIAAAVLFLASDEARY--ITGQTLPVDGGAT 248 (251)
T ss_pred HHHHHHHHHHHhCccccC--cCCcEEEECCCcc
Confidence 999999999988764321 1234899988653
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=181.28 Aligned_cols=223 Identities=14% Similarity=0.121 Sum_probs=156.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----cC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
++++|||||+|+||+++++.|+++| ++|+++.|+++....+.+. .+..+.++++|++|++++..+++. ++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAG---ANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999 8999999986655444432 234577789999999877665543 45
Q ss_pred CCCEEEEcccccCcccc----ccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRVC----ENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|+|||+|+....... ....+..++.|+.+++ .+++.+ ++.+.+++|++||...+.+.+.
T Consensus 78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~-~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~---------- 146 (255)
T TIGR01963 78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAF-HTIRAALPHMKKQGWGRIINIASAHGLVASPF---------- 146 (255)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCeEEEEEcchhhcCCCCC----------
Confidence 79999999997643221 1223566789999986 666665 5567789999999876655433
Q ss_pred CChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhc-CCc-------eeeccCcc
Q 022280 148 VNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSK-GEK-------VEFFHDEC 212 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~ 212 (300)
...|+.+|.+.+.+++.+. .+++++||+.++++..... +...... ... ....+.+.
T Consensus 147 ~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (255)
T TIGR01963 147 KSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQ---------IADQAKTRGIPEEQVIREVMLPGQPT 217 (255)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHH---------HHhhhcccCCCchHHHHHHHHccCcc
Confidence 5789999999998887553 3578899999988742110 0000000 000 01113355
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+++++++|+|++++++++..... ..++.||++++..
T Consensus 218 ~~~~~~~d~a~~~~~~~~~~~~~--~~g~~~~~~~g~~ 253 (255)
T TIGR01963 218 KRFVTVDEVAETALFLASDAAAG--ITGQAIVLDGGWT 253 (255)
T ss_pred ccCcCHHHHHHHHHHHcCccccC--ccceEEEEcCccc
Confidence 68999999999999999874322 1133899988653
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=176.11 Aligned_cols=220 Identities=18% Similarity=0.219 Sum_probs=151.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhh----cCCCceeEEEeecCCchhHHHHHHh----
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLD----ALPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
+++||||||+|+||++++++|+++| ++|++++|+... ...+.. ..+..+.++.+|++|.+++..+++.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAG---YRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999 899999987432 222221 1123567789999999887776654
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc---cCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN---KENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++++|+|||+||...... ..+.++..+++|+.++. ++++++.+. ..+.++.++|... ..+..
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 151 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPF-FLSQAAAPQLRKQRGAIVNITDIHA----------ERPLK 151 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHH-HHHHHHHHHHhhCCeEEEEEeChhh----------cCCCC
Confidence 467999999999754321 22345678899999997 998888642 2235666665322 23345
Q ss_pred CCChhHHHHHHHHHHHHHHc------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
+.+.|+.||..+|.+++.+. .+++++||+.++||..... ++........ .+..+ ..+.+++|
T Consensus 152 ~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~----~~~~~~~~~~-~~~~~-------~~~~~~~d 219 (249)
T PRK09135 152 GYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNS----FDEEARQAIL-ARTPL-------KRIGTPED 219 (249)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCcccccc----CCHHHHHHHH-hcCCc-------CCCcCHHH
Confidence 67899999999999998754 3578899999999875321 1222222222 22221 12346899
Q ss_pred HHHHHHHHHhcc-ccccccccceeeecCCCccC
Q 022280 221 VVKIILALTNRW-LSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 221 ~a~~~~~~~~~~-~~~~~~~~~i~ni~~~~~~s 252 (300)
+++++.+++... ... +++||++++..++
T Consensus 220 ~a~~~~~~~~~~~~~~----g~~~~i~~g~~~~ 248 (249)
T PRK09135 220 IAEAVRFLLADASFIT----GQILAVDGGRSLT 248 (249)
T ss_pred HHHHHHHHcCcccccc----CcEEEECCCeecc
Confidence 999997776542 223 3499999988655
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-24 Score=179.35 Aligned_cols=228 Identities=16% Similarity=0.150 Sum_probs=159.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~~d 78 (300)
++++|||||+|+||+++++.|+++| ++|++.+|+.+....+.+.....+.++.+|++|.++++.+++. ++++|
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEG---ARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4789999999999999999999999 8999999987766666555555677889999999987776654 46899
Q ss_pred EEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc----c-CCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 79 VVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN----K-ENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 79 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
+|||+|+...... ..+.++..+++|+.+++ ++++++... + .++||++||.....+.+ +..
T Consensus 83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------~~~ 151 (257)
T PRK07067 83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLF-FLMQAVARHMVEQGRGGKIINMASQAGRRGEA----------LVS 151 (257)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHH-HHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCC----------CCc
Confidence 9999999754321 23356678999999996 888877542 1 24899999965432221 367
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh--cCCceeec--cCcccCceeH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLS--KGEKVEFF--HDECRCPVYV 218 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~i~v 218 (300)
.|+.||.+.+.+++.++. ++.++||+.++++...... ..+..... .+...... +.+.+++.++
T Consensus 152 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (257)
T PRK07067 152 HYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVD------ALFARYENRPPGEKKRLVGEAVPLGRMGVP 225 (257)
T ss_pred hhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhh------hhhhhccCCCHHHHHHHHhhcCCCCCccCH
Confidence 899999999998876542 5688999999987421100 00000000 00000011 1245789999
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+|+|+++.+++...... ..+.+|++++|+.+|
T Consensus 226 ~dva~~~~~l~s~~~~~--~~g~~~~v~gg~~~~ 257 (257)
T PRK07067 226 DDLTGMALFLASADADY--IVAQTYNVDGGNWMS 257 (257)
T ss_pred HHHHHHHHHHhCccccc--ccCcEEeecCCEeCC
Confidence 99999999999864321 113499999987654
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=182.56 Aligned_cols=226 Identities=14% Similarity=0.108 Sum_probs=155.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHh----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
|.++++|||||+|+||++++++|+++| ++|++++|++++...+...+ +.++.++.+|++|++++..+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEG---AKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999 89999999876655443322 45677899999999987666653
Q ss_pred cCCCCEEEEcccccCcccc----ccChhhhhhcccccch---HHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRVC----ENDPDSAMSINVPSSL---VNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~---~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++++|+|||+|+....... ....+..+++|+.+++ ..+++.+++.+.++||++||...+.+...
T Consensus 79 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~--------- 149 (258)
T PRK12429 79 FGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSAG--------- 149 (258)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCC---------
Confidence 4679999999997543221 2234567889999964 13444455567789999999876654433
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCC------chHHHHHHHHhcCCceeeccCccc
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKS------LPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
.+.|+.+|.+.+.+++.+.. ++.++||+.+++|......+.. .......... ......+
T Consensus 150 -~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 221 (258)
T PRK12429 150 -KAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVL-------LPLVPQK 221 (258)
T ss_pred -cchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHH-------hccCCcc
Confidence 67899999999988876532 4678999999887532111000 0000000000 0112346
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
+|++++|+|+++++++...... ..++.|++++|
T Consensus 222 ~~~~~~d~a~~~~~l~~~~~~~--~~g~~~~~~~g 254 (258)
T PRK12429 222 RFTTVEEIADYALFLASFAAKG--VTGQAWVVDGG 254 (258)
T ss_pred ccCCHHHHHHHHHHHcCccccC--ccCCeEEeCCC
Confidence 7999999999999999764322 11338888876
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=171.64 Aligned_cols=183 Identities=23% Similarity=0.272 Sum_probs=142.4
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEccc
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAA 85 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a~ 85 (300)
|+|+||||++|++++++|+++| ++|+++.|++++.+. ..+++++++|+.|++++.+.++ ++|+|||+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~~~~~~~-----~~~~~~~~~d~~d~~~~~~al~---~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRSPSKAED-----SPGVEIIQGDLFDPDSVKAALK---GADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGHHH-----CTTEEEEESCTTCHHHHHHHHT---TSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecCchhccc-----ccccccceeeehhhhhhhhhhh---hcchhhhhhh
Confidence 7999999999999999999999 899999999776554 5678899999999988888777 8999999997
Q ss_pred ccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 022280 86 LSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEK 165 (300)
Q Consensus 86 ~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~ 165 (300)
.... + .... .++++++++.+++++|++||..+|.............. ...|...|...|+.++..
T Consensus 70 ~~~~-------~------~~~~-~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~ 134 (183)
T PF13460_consen 70 PPPK-------D------VDAA-KNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKPI-FPEYARDKREAEEALRES 134 (183)
T ss_dssp STTT-------H------HHHH-HHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCGG-GHHHHHHHHHHHHHHHHS
T ss_pred hhcc-------c------cccc-ccccccccccccccceeeeccccCCCCCcccccccccc-hhhhHHHHHHHHHHHHhc
Confidence 5322 1 3333 48999999999999999999999986554211111111 257889999999999988
Q ss_pred cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhc
Q 022280 166 CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 166 ~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 231 (300)
..+|+++||+.+||+... ...+. .-.+....++|+.+|+|++++.++++
T Consensus 135 ~~~~~ivrp~~~~~~~~~---~~~~~--------------~~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 135 GLNWTIVRPGWIYGNPSR---SYRLI--------------KEGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp TSEEEEEEESEEEBTTSS---SEEEE--------------SSTSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred CCCEEEEECcEeEeCCCc---ceeEE--------------eccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 889999999999998632 10000 00223456899999999999999874
|
... |
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=181.53 Aligned_cols=229 Identities=17% Similarity=0.148 Sum_probs=158.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHH---HHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDA---VAL 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~---~~~ 72 (300)
|+++++|||||+|+||+++++.|+++| ++|++++|+++....+.+.. +..+.++.+|++|+++++. +.+
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 77 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKG---YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLK 77 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 677889999999999999999999999 89999999866554443221 2467788999999988765 333
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.++++|+||||||...... ..+.++..+++|+.+++ .+++.+ ++.+.++||++||...+.+..
T Consensus 78 ~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~-------- 148 (280)
T PRK06914 78 EIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAI-SVTQAVLPYMRKQKSGKIINISSISGRVGFP-------- 148 (280)
T ss_pred hcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCEEEEECcccccCCCC--------
Confidence 4578999999999765322 12334567889999986 666664 556678999999965443322
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCC--------CCchHHHHHHHHhcCCceeecc
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVP--------KSLPIQWIDSVLSKGEKVEFFH 209 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
+...|+.+|...+.++++++ .+++++||+.+.++......+ ......++.... ....
T Consensus 149 --~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 220 (280)
T PRK06914 149 --GLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQ------KHIN 220 (280)
T ss_pred --CCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHH------HHHh
Confidence 26789999999999888764 467899999988763211000 000011111111 0001
Q ss_pred CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHH
Q 022280 210 DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRV 254 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~ 254 (300)
...+.+++++|+|++++++++++... . .|+++++..+++.
T Consensus 221 ~~~~~~~~~~dva~~~~~~~~~~~~~-~----~~~~~~~~~~~~~ 260 (280)
T PRK06914 221 SGSDTFGNPIDVANLIVEIAESKRPK-L----RYPIGKGVKLMIL 260 (280)
T ss_pred hhhhccCCHHHHHHHHHHHHcCCCCC-c----ccccCCchHHHHH
Confidence 22346789999999999999985543 2 6899887766655
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=172.81 Aligned_cols=207 Identities=20% Similarity=0.239 Sum_probs=153.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC-CceeEEEeecCCchhHHH----HHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP-HSFVFFDVDLKSGSGFDA----VALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~----~~~~~~~ 76 (300)
.+|.++|||||++||.++++.|++.| ++|++..|+.++++++..+++ ..+..+..|++|+++++. +.+.+++
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G---~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAG---AKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCC---CeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence 35789999999999999999999999 999999999999999998887 467778999999988544 4456788
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
+|++|||||...... ..++++.++++|+.|.+. .++..+.+++.++||.+||.+.--+.+. .+
T Consensus 82 iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~----------~~ 151 (246)
T COG4221 82 IDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPG----------GA 151 (246)
T ss_pred ccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCC----------Cc
Confidence 999999999875432 344678899999999862 3455566777789999999885444444 67
Q ss_pred hhHHHHHHHHHHHHHHcCCc--eeEeeeeeeCCCCC-CCCCCCch----HHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCSNF--AILRSSIIYGPQTI-SPVPKSLP----IQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~~~--~ilR~~~v~G~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.+|.++..+...+..+. .-+|.+.|+ |+.- ........ .....+.. ....++.++|+|
T Consensus 152 vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~-PG~v~~~~~s~v~~~g~~~~~~~~y-----------~~~~~l~p~dIA 219 (246)
T COG4221 152 VYGATKAAVRAFSLGLRQELAGTGIRVTVIS-PGLVETTEFSTVRFEGDDERADKVY-----------KGGTALTPEDIA 219 (246)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCCeeEEEec-CceecceecccccCCchhhhHHHHh-----------ccCCCCCHHHHH
Confidence 89999999999998877655 445655554 2211 00000000 00111100 123578999999
Q ss_pred HHHHHHHhccc
Q 022280 223 KIILALTNRWL 233 (300)
Q Consensus 223 ~~~~~~~~~~~ 233 (300)
+++++++++|.
T Consensus 220 ~~V~~~~~~P~ 230 (246)
T COG4221 220 EAVLFAATQPQ 230 (246)
T ss_pred HHHHHHHhCCC
Confidence 99999999964
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=179.37 Aligned_cols=231 Identities=15% Similarity=0.143 Sum_probs=160.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHHh--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVALK-- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~-- 73 (300)
|.++++|||||+|+||+++++.|+++| ++|+++.|+++......+.+ +..+.++.+|++|++++..++++
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAG---AAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAAT 81 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999999 89999999865544333322 24567788999999877665543
Q ss_pred --cCCCCEEEEcccccCc--c---ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCC
Q 022280 74 --FGQPDVVVNCAALSVP--R---VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 74 --~~~~d~vih~a~~~~~--~---~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
++++|+|||+||.... . ...+.+...+++|+.++. .+++++.+ .+.++||++||...+.+.+.
T Consensus 82 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~----- 155 (276)
T PRK05875 82 AWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTM-YVLKHAARELVRGGGGSFVGISSIAASNTHRW----- 155 (276)
T ss_pred HHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEEechhhcCCCCC-----
Confidence 5689999999996432 1 122235677899999996 77665543 34469999999887655432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
.+.|+.+|.+.|.+++.+.. +++++||+.+.++....... ......... . ......+
T Consensus 156 -----~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---~~~~~~~~~-~-------~~~~~~~ 219 (276)
T PRK05875 156 -----FGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITE---SPELSADYR-A-------CTPLPRV 219 (276)
T ss_pred -----CcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccccc---CHHHHHHHH-c-------CCCCCCC
Confidence 67899999999999987653 45778888876553211000 001111111 1 1123457
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCcc----CHHHHHH
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV----SRVQMAE 258 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~----s~~e~~~ 258 (300)
++++|+++++.++++.+... ..+++|++++++.+ +..|+.+
T Consensus 220 ~~~~dva~~~~~l~~~~~~~--~~g~~~~~~~g~~~~~~~~~~~~~~ 264 (276)
T PRK05875 220 GEVEDVANLAMFLLSDAASW--ITGQVINVDGGHMLRRGPDFSSMLE 264 (276)
T ss_pred cCHHHHHHHHHHHcCchhcC--cCCCEEEECCCeeccCCccHHHHHH
Confidence 88999999999999875432 12348999998876 6777665
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-24 Score=180.71 Aligned_cols=218 Identities=16% Similarity=0.107 Sum_probs=150.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
+++++|||||+|+||+++++.|+++| ++|++++|+++....+....+.++..+.+|++|.+++..+++ .++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~ 79 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAG---HRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPI 79 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCc---CEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999 899999998766655555445567778999999998766554 35679
Q ss_pred CEEEEcccccCccccc----cChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRVCE----NDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+|||+||........ +.++..+++|+.|++ ++++++ ++.+.+++|++||...+.+.+ +..
T Consensus 80 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~----------~~~ 148 (277)
T PRK06180 80 DVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAV-AMTKAVLPGMRARRRGHIVNITSMGGLITMP----------GIG 148 (277)
T ss_pred CEEEECCCccCCcccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhccCCCEEEEEecccccCCCC----------Ccc
Confidence 9999999976432221 234567899999996 777774 345667999999987665433 267
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCC--CchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPK--SLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
.|+.+|.++|.+++.++ .+++++||+.+.++........ .....+. .......... .......+.+++|
T Consensus 149 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~d 226 (277)
T PRK06180 149 YYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYD-ALFGPIRQAR-EAKSGKQPGDPAK 226 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHH-HHHHHHHHHH-HhhccCCCCCHHH
Confidence 89999999998887653 4678999999977532111100 0011111 0000000000 0012234678999
Q ss_pred HHHHHHHHHhccccc
Q 022280 221 VVKIILALTNRWLSE 235 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~ 235 (300)
++++++.+++.+...
T Consensus 227 va~~~~~~l~~~~~~ 241 (277)
T PRK06180 227 AAQAILAAVESDEPP 241 (277)
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999885443
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=175.34 Aligned_cols=225 Identities=16% Similarity=0.126 Sum_probs=154.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHHh----cC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
.+++++||||+|+||+++++.|+++| ++|+++.|+.+......+.+ +..+.++++|++|++++.++++. ++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREG---ARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC---CeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999 89999999866544443332 34577889999999987766553 46
Q ss_pred CCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|+|||+|+...... ..+.++..+++|+.+++ .+.+. +++.+.++||++||.....+...
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~---------- 149 (252)
T PRK06138 81 RLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVF-LWAKYAIPIMQRQGGGSIVNTASQLALAGGRG---------- 149 (252)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHH-HHHHHHHHHHHhcCCeEEEEECChhhccCCCC----------
Confidence 8999999999754321 22345567899999985 55444 45567789999999765443322
Q ss_pred CChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.+|.+.+.+++.+. .+++++||+.++++..............+....... .....+++++|
T Consensus 150 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d 222 (252)
T PRK06138 150 RAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRAR-------HPMNRFGTAEE 222 (252)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhc-------CCCCCCcCHHH
Confidence 5789999999999887763 367889999998875321111110111111111111 11234789999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++++++++++++... ..+..+.+.++.
T Consensus 223 ~a~~~~~l~~~~~~~--~~g~~~~~~~g~ 249 (252)
T PRK06138 223 VAQAALFLASDESSF--ATGTTLVVDGGW 249 (252)
T ss_pred HHHHHHHHcCchhcC--ccCCEEEECCCe
Confidence 999999999885422 112367776653
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-24 Score=178.39 Aligned_cols=224 Identities=17% Similarity=0.130 Sum_probs=157.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
.++++|||||+|+||++++++|+++| ++|++++|++++...+.+.+ +..+.++++|++|.++++.+++. +
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAG---AEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999 89999999866554443333 23467789999999987776653 4
Q ss_pred CCCCEEEEcccccCcccc----ccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRVC----ENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+|||+||....... .+.++..+.+|+.+++ ++++++.+ .+.+++|++||.....+..
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~---------- 154 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVF-YVGQAVARHMIARGAGKIINIASVQSALARP---------- 154 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhCCeEEEEEccchhccCCC----------
Confidence 679999999997643322 2234667889999996 77777664 3567999999976544332
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
+...|+.+|.+.+.+++.++ .++.++||+.+.++......+. .. ....+.... ....+.+++
T Consensus 155 ~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~---~~-~~~~~~~~~-------~~~~~~~~~ 223 (255)
T PRK07523 155 GIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVAD---PE-FSAWLEKRT-------PAGRWGKVE 223 (255)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccC---HH-HHHHHHhcC-------CCCCCcCHH
Confidence 26789999999999887664 3567899999887743211110 11 111111111 234578899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
|+|.++++++...... -.+.++++.+|..+|
T Consensus 224 dva~~~~~l~~~~~~~--~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 224 ELVGACVFLASDASSF--VNGHVLYVDGGITAS 254 (255)
T ss_pred HHHHHHHHHcCchhcC--ccCcEEEECCCeecc
Confidence 9999999999763221 113388998886554
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=213.41 Aligned_cols=243 Identities=19% Similarity=0.181 Sum_probs=170.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhcc--CCCceeeecCCCCCchhh---hhh----------cCCCceeEEEeecCCch--
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIE--GKPYDVAATHHSTPLPQL---LLD----------ALPHSFVFFDVDLKSGS-- 65 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g--~~~~~v~~~~r~~~~~~~---~~~----------~~~~~~~~~~~D~~~~~-- 65 (300)
.++|||||||||||+++++.|++++ .. ++|+++.|+...... +.. ....++.++.+|++++.
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~-~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSN-FKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCC-cEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 4789999999999999999999887 33 789999997543322 111 11236788999998653
Q ss_pred ----hHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC-----
Q 022280 66 ----GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK----- 136 (300)
Q Consensus 66 ----~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~----- 136 (300)
.+..+.. ++|+|||+|+..... .........|+.|+. ++++.|.+.++++|+|+||.++|+...
T Consensus 1050 l~~~~~~~l~~---~~d~iiH~Aa~~~~~---~~~~~~~~~nv~gt~-~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~ 1122 (1389)
T TIGR03443 1050 LSDEKWSDLTN---EVDVIIHNGALVHWV---YPYSKLRDANVIGTI-NVLNLCAEGKAKQFSFVSSTSALDTEYYVNLS 1122 (1389)
T ss_pred cCHHHHHHHHh---cCCEEEECCcEecCc---cCHHHHHHhHHHHHH-HHHHHHHhCCCceEEEEeCeeecCcccccchh
Confidence 2344433 899999999976432 123344568999996 999999988889999999999986421
Q ss_pred --------CCCCCCCC-----CCCCChhHHHHHHHHHHHHHHc---CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh
Q 022280 137 --------SFYKEEDE-----IAPVNVYGKSKVAAEKFIYEKC---SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLS 200 (300)
Q Consensus 137 --------~~~~E~~~-----~~p~~~Y~~sK~~~e~~~~~~~---~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~ 200 (300)
..+.|+++ ..+.+.|+.||..+|.++..+. .+++++||+.|||++...... ...++...+.
T Consensus 1123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~---~~~~~~~~~~ 1199 (1389)
T TIGR03443 1123 DELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKRGLRGCIVRPGYVTGDSKTGATN---TDDFLLRMLK 1199 (1389)
T ss_pred hhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhCCCCEEEECCCccccCCCcCCCC---chhHHHHHHH
Confidence 12444432 2245679999999999998753 478999999999986432211 1223333332
Q ss_pred cCCceeecc--CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH
Q 022280 201 KGEKVEFFH--DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 201 ~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
........+ .+.++|++|+|++++++.++.++.... .+.+||++++..+++.++++
T Consensus 1200 ~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~ 1257 (1389)
T TIGR03443 1200 GCIQLGLIPNINNTVNMVPVDHVARVVVAAALNPPKES--ELAVAHVTGHPRIRFNDFLG 1257 (1389)
T ss_pred HHHHhCCcCCCCCccccccHHHHHHHHHHHHhCCcccC--CCCEEEeCCCCCCcHHHHHH
Confidence 221222222 356899999999999999987643211 13489999988899988877
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=174.98 Aligned_cols=220 Identities=20% Similarity=0.196 Sum_probs=154.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++++++||||+|+||+++++.|+++| ++|++++|+.+....+.+.+ +....++.+|+++.+++..+++ .+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g---~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREG---ASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 89999999865444333322 3356678999999988766554 45
Q ss_pred CCCCEEEEcccccCc-------cccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVP-------RVCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 75 ~~~d~vih~a~~~~~-------~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
+++|+|||+||.... ..+.+.+...+++|+.+++ ++++++.. .+.++||++||..+|.+
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~--------- 151 (250)
T PRK07774 82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGAL-VCTRAVYKHMAKRGGGAIVNQSSTAAWLY--------- 151 (250)
T ss_pred CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhCCcEEEEEecccccCC---------
Confidence 689999999997531 1122345567899999996 87777664 34569999999887743
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
.+.|+.||.+.|.+++.++. .+.+++|+.+..+..... .+..+..... ...+. ..+.
T Consensus 152 ----~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~----~~~~~~~~~~-~~~~~-------~~~~ 215 (250)
T PRK07774 152 ----SNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTV----TPKEFVADMV-KGIPL-------SRMG 215 (250)
T ss_pred ----ccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCcccccc----CCHHHHHHHH-hcCCC-------CCCc
Confidence 46799999999999887654 357788887766543211 1222222222 22111 1256
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+++|+++++++++...... ..+++||+++++.++
T Consensus 216 ~~~d~a~~~~~~~~~~~~~--~~g~~~~v~~g~~~~ 249 (250)
T PRK07774 216 TPEDLVGMCLFLLSDEASW--ITGQIFNVDGGQIIR 249 (250)
T ss_pred CHHHHHHHHHHHhChhhhC--cCCCEEEECCCeecc
Confidence 7999999999998764221 123489999987553
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=175.75 Aligned_cols=219 Identities=14% Similarity=0.151 Sum_probs=151.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
.+++++||||+|+||++++++|+++| ++|+++.|+.+........ .+..+.++.+|+++.+++..+++. +
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAG---FPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEAL 85 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999 8999988875544333222 234567789999999988776654 4
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+|||+||...... ..+.++..+++|+.++. ++++.+. +.+.++||++||...+.+.+.
T Consensus 86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~~--------- 155 (274)
T PRK07775 86 GEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGAN-RLATAVLPGMIERRRGDLIFVGSDVALRQRPH--------- 155 (274)
T ss_pred CCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCceEEEECChHhcCCCCC---------
Confidence 68999999999754321 12344567899999996 7766654 345568999999888765432
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.+|.+.|.+++.+. .+++++||+.+..+......+. ....++.... ...+...+.+++++
T Consensus 156 -~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~ 227 (274)
T PRK07775 156 -MGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAE-VIGPMLEDWA------KWGQARHDYFLRAS 227 (274)
T ss_pred -cchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChh-hhhHHHHHHH------HhcccccccccCHH
Confidence 5689999999999998763 4678899987754421111111 1111111111 00112345689999
Q ss_pred HHHHHHHHHHhccccccccccceeeec
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVG 246 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~ 246 (300)
|+|++++++++++. ++. +||+.
T Consensus 228 dva~a~~~~~~~~~-~~~----~~~~~ 249 (274)
T PRK07775 228 DLARAITFVAETPR-GAH----VVNME 249 (274)
T ss_pred HHHHHHHHHhcCCC-CCC----eeEEe
Confidence 99999999998753 222 77774
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-23 Score=173.40 Aligned_cols=223 Identities=17% Similarity=0.121 Sum_probs=149.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|.++++|||||+|+||++++++|+++| ++|++.+|+.. ...+.+. .+..+.++++|+++.+++..+++ .
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G---~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEG---ARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999999 89999998742 2222222 23456678999999887665554 3
Q ss_pred cCCCCEEEEcccccCc-----cccccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+|||+||.... ....+.++..+++|+.+++. .+++.+++.+.++||++||...++..
T Consensus 82 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------- 151 (260)
T PRK12823 82 FGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGIN---------- 151 (260)
T ss_pred cCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCCC----------
Confidence 5789999999985421 11233456778899988751 34444545666799999998776432
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCC--------CCCCCchHHHHHHHHhcCCceeeccC
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTIS--------PVPKSLPIQWIDSVLSKGEKVEFFHD 210 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
..+|+.||.+.+.+++.++ .++.+++|+.+++|.... .........+..... ...
T Consensus 152 --~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------- 221 (260)
T PRK12823 152 --RVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTL-DSS------- 221 (260)
T ss_pred --CCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHh-ccC-------
Confidence 4579999999999888764 356889999999873110 001111112222211 111
Q ss_pred cccCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 211 ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 211 ~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
....+.+++|+++++++++..... ...+.+|++.+|+
T Consensus 222 ~~~~~~~~~dva~~~~~l~s~~~~--~~~g~~~~v~gg~ 258 (260)
T PRK12823 222 LMKRYGTIDEQVAAILFLASDEAS--YITGTVLPVGGGD 258 (260)
T ss_pred CcccCCCHHHHHHHHHHHcCcccc--cccCcEEeecCCC
Confidence 223466899999999999875321 1113389998765
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=175.91 Aligned_cols=225 Identities=14% Similarity=0.108 Sum_probs=155.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|.+|++|||||+|+||+++++.|+++| ++|++++|+++....+.+.+ +..+.++.+|++|.++++.+++ .
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAG---ADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999 89999999866554444332 3457789999999988766554 4
Q ss_pred cCCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhhhc---cCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFTEN---KENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+|||+||.... ....+.++..+++|+.+++ .+++++... ..++||++||...+.+.+.
T Consensus 80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~-------- 150 (258)
T PRK07890 80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTL-RLTQAFTPALAESGGSIVMINSMVLRHSQPK-------- 150 (258)
T ss_pred cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHhCCCEEEEEechhhccCCCC--------
Confidence 5789999999987532 1223456778999999996 888877642 2358999999876554332
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCC-----Cch-HHHHHHHHhcCCceeeccCcc
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPK-----SLP-IQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.+|.+.+.+++.++ .++.++||+.++++........ ... ...... +.+. ...
T Consensus 151 --~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~ 220 (258)
T PRK07890 151 --YGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAE-TAAN-------SDL 220 (258)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHH-Hhhc-------CCc
Confidence 6789999999999988765 3568899999998853110000 000 011111 1010 123
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
..+.+++|++++++++++.... .-.++++.+.++.
T Consensus 221 ~~~~~~~dva~a~~~l~~~~~~--~~~G~~i~~~gg~ 255 (258)
T PRK07890 221 KRLPTDDEVASAVLFLASDLAR--AITGQTLDVNCGE 255 (258)
T ss_pred cccCCHHHHHHHHHHHcCHhhh--CccCcEEEeCCcc
Confidence 3578899999999999975321 1112366666654
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=175.49 Aligned_cols=223 Identities=15% Similarity=0.150 Sum_probs=157.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc--hhhh---hhcCCCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQLL---LDALPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~--~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
.+|++|||||+|+||+++++.|+++| ++|++..++.+. .... ....+..+.++.+|+++.++++++++
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G---~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREG---ADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcC---CEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999 889887775432 1222 22224456778999999988766654
Q ss_pred hcCCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
.++++|+||||||.... +.+.+.++..+++|+.+++ .+++++... ..++||++||...|.+...
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 201 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMF-WLCKAAIPHLPPGASIINTGSIQSYQPSPT-------- 201 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHhcCcCCEEEEECCccccCCCCC--------
Confidence 35789999999997532 1233457788999999996 888887652 2359999999988876544
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+++.+++.++. ++.+++|+.+.++..... ......... +... .....+.++
T Consensus 202 --~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~---~~~~~~~~~-~~~~-------~p~~r~~~p 268 (300)
T PRK06128 202 --LLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSG---GQPPEKIPD-FGSE-------TPMKRPGQP 268 (300)
T ss_pred --chhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccC---CCCHHHHHH-HhcC-------CCCCCCcCH
Confidence 56799999999999887643 567899999988753210 111112211 1111 123467889
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
+|++.++++++...... ..+.+|++++|..+
T Consensus 269 ~dva~~~~~l~s~~~~~--~~G~~~~v~gg~~~ 299 (300)
T PRK06128 269 VEMAPLYVLLASQESSY--VTGEVFGVTGGLLL 299 (300)
T ss_pred HHHHHHHHHHhCccccC--ccCcEEeeCCCEeC
Confidence 99999999998753221 12348999988654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-23 Score=172.00 Aligned_cols=225 Identities=15% Similarity=0.141 Sum_probs=155.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHH----hcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVAL----KFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~----~~~ 75 (300)
.++++|||||+|+||+++++.|+++| ++|++++|+++....+...+ +..+.++++|++|++++..+++ .++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEG---ARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999 89999999976655444333 2456789999999998776654 456
Q ss_pred CCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 76 ~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++|+|||+|+..... .+.+.++..+++|+.+++ .+.+.+. +.+.++||++||...+.+...
T Consensus 81 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~--------- 150 (251)
T PRK07231 81 SVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPY-LWTQAAVPAMRGEGGGAIVNVASTAGLRPRPG--------- 150 (251)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCcEEEEEcChhhcCCCCC---------
Confidence 899999999974321 122345678899999885 5555444 456779999999888776543
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.+|...+.+++.++. ++..++|+.+..+......... ......... . ..+...+++++
T Consensus 151 -~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~-~~~~~~~~~-~-------~~~~~~~~~~~ 220 (251)
T PRK07231 151 -LGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEP-TPENRAKFL-A-------TIPLGRLGTPE 220 (251)
T ss_pred -chHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhccc-ChHHHHHHh-c-------CCCCCCCcCHH
Confidence 67899999999988876543 5678899988654321100000 001111111 1 11234678999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
|+|+++++++...... ..+..+.+.++..+
T Consensus 221 dva~~~~~l~~~~~~~--~~g~~~~~~gg~~~ 250 (251)
T PRK07231 221 DIANAALFLASDEASW--ITGVTLVVDGGRCV 250 (251)
T ss_pred HHHHHHHHHhCccccC--CCCCeEEECCCccC
Confidence 9999999999764321 11336788776443
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-23 Score=173.28 Aligned_cols=220 Identities=14% Similarity=0.120 Sum_probs=153.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHH----HHhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAV----ALKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~----~~~~~~~ 77 (300)
.+|+++||||+|+||+++++.|+++| ++|++++|+.++...+.+..+..+.++.+|+++.+++..+ .+.++++
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 85 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEG---WQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRL 85 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999 8999998886655554444455677889999999876544 4445789
Q ss_pred CEEEEcccccCcc------ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR------VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 78 d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
|+||||||..... .+.+.++..+++|+.+++ ++++++.+ ...+++|++||...+.+.+. .
T Consensus 86 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~~----------~ 154 (255)
T PRK05717 86 DALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPM-LLAKHCAPYLRAHNGAIVNLASTRARQSEPD----------T 154 (255)
T ss_pred CEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCcEEEEEcchhhcCCCCC----------C
Confidence 9999999976431 123345688999999997 88888863 22358999999876654433 5
Q ss_pred ChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
+.|+.+|.+++.+++.++. ++..++|+.+.++...... ... ........ .....+.+++|++
T Consensus 155 ~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~----~~~-~~~~~~~~-------~~~~~~~~~~~va 222 (255)
T PRK05717 155 EAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRR----AEP-LSEADHAQ-------HPAGRVGTVEDVA 222 (255)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCcccccc----chH-HHHHHhhc-------CCCCCCcCHHHHH
Confidence 6899999999998876643 4567888888776421110 001 11111000 1123578899999
Q ss_pred HHHHHHHhccccccccccceeeecCCC
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.++.++++.... ...+.++.+.++.
T Consensus 223 ~~~~~l~~~~~~--~~~g~~~~~~gg~ 247 (255)
T PRK05717 223 AMVAWLLSRQAG--FVTGQEFVVDGGM 247 (255)
T ss_pred HHHHHHcCchhc--CccCcEEEECCCc
Confidence 999999865321 1112367776654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=170.94 Aligned_cols=220 Identities=16% Similarity=0.155 Sum_probs=155.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
++|+||||||+|+||+++++.|+++| ++|+++.|+++....+... .+..+.++.+|++|++++..+++. +
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADG---AKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAF 80 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 44799999999999999999999999 8899999987655443332 245677788999999887766653 4
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+.+|+|||+||...... ..+.+...++.|+.++. ++++.+. +.+.++||++||.....+..
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~---------- 149 (246)
T PRK05653 81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTF-NVVRAALPPMIKARYGRIVNISSVSGVTGNP---------- 149 (246)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEECcHHhccCCC----------
Confidence 67899999998764422 22234567889999986 7777764 45668999999976543322
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
+...|+.+|.+.+.+++.+. .+++++||+.++++.... +. .......... ...+.+++++
T Consensus 150 ~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~-----~~-~~~~~~~~~~-------~~~~~~~~~~ 216 (246)
T PRK05653 150 GQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG-----LP-EEVKAEILKE-------IPLGRLGQPE 216 (246)
T ss_pred CCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh-----hh-HHHHHHHHhc-------CCCCCCcCHH
Confidence 36789999999988877653 257889999998876421 11 1111111111 1235688999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
|+++++.+++...... ..+.+|++++|..
T Consensus 217 dva~~~~~~~~~~~~~--~~g~~~~~~gg~~ 245 (246)
T PRK05653 217 EVANAVAFLASDAASY--ITGQVIPVNGGMY 245 (246)
T ss_pred HHHHHHHHHcCchhcC--ccCCEEEeCCCee
Confidence 9999999999763321 1133899988753
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-23 Score=172.71 Aligned_cols=220 Identities=16% Similarity=0.161 Sum_probs=151.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHhc---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALKF--- 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~--- 74 (300)
++++++||||+|+||+++++.|+++| ++|++. .|+.++.......+ +..+.++.+|++|++++...++..
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G---~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDG---ALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 35799999999999999999999999 788764 56544433333222 345777899999999887766643
Q ss_pred -------CCCCEEEEcccccCccccc----cChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCC
Q 022280 75 -------GQPDVVVNCAALSVPRVCE----NDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 75 -------~~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
+++|+|||+||........ ...+..+++|+.+++ ++++.+.+ .+.+++|++||..++.+.+.
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~v~~sS~~~~~~~~~---- 156 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPF-FLIQQTLPLLRAEGRVINISSAEVRLGFTG---- 156 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHhhcCCEEEEECCHHhcCCCCC----
Confidence 3699999999975432211 223566789999996 88888765 23458999999888765433
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+.+.+++.+. .++++++|+.+.++-.....+. ..+........ ....
T Consensus 157 ------~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~----~~~~~~~~~~~-------~~~~ 219 (254)
T PRK12746 157 ------SIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDD----PEIRNFATNSS-------VFGR 219 (254)
T ss_pred ------CcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccC----hhHHHHHHhcC-------CcCC
Confidence 6789999999999876653 3567889999887642111100 11111111111 1235
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
+++++|+++++.+++..... ...+.+|+++++
T Consensus 220 ~~~~~dva~~~~~l~~~~~~--~~~g~~~~i~~~ 251 (254)
T PRK12746 220 IGQVEDIADAVAFLASSDSR--WVTGQIIDVSGG 251 (254)
T ss_pred CCCHHHHHHHHHHHcCcccC--CcCCCEEEeCCC
Confidence 77899999999988876421 112348999876
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-23 Score=174.15 Aligned_cols=222 Identities=16% Similarity=0.123 Sum_probs=148.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhh---cCCCceeEEEeecCCchhHHHHHHh----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
+++++|||||+||||++++++|+++| ++|+++.|+.+. ...+.. ..+..+.++++|++|++++..+++.
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G---~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAG---AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCC---CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999999999 899998887532 222221 1234567789999999987666553
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
++++|+|||+|+.... ....+...+++|+.+++ ++++++.+. ..+++|++||........ .+..+ ....|
T Consensus 82 ~~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~-~l~~~~~~~~~~~~~iv~isS~~~~~~~~---~~~~~--~~~~Y 153 (248)
T PRK07806 82 FGGLDALVLNASGGME--SGMDEDYAMRLNRDAQR-NLARAALPLMPAGSRVVFVTSHQAHFIPT---VKTMP--EYEPV 153 (248)
T ss_pred CCCCcEEEECCCCCCC--CCCCcceeeEeeeHHHH-HHHHHHHhhccCCceEEEEeCchhhcCcc---ccCCc--cccHH
Confidence 4579999999986432 22346678899999996 998888763 235899999954321110 11111 25689
Q ss_pred HHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHH
Q 022280 152 GKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVV 222 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a 222 (300)
+.||.++|.+++.++.+ +.+++|+.+-++.. ..+.. ...+-.... ....++++++|++
T Consensus 154 ~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~---------~~~~~----~~~~~~~~~~~~~~~~~~~~~dva 220 (248)
T PRK07806 154 ARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVT---------ATLLN----RLNPGAIEARREAAGKLYTVSEFA 220 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchh---------hhhhc----cCCHHHHHHHHhhhcccCCHHHHH
Confidence 99999999999887543 34444444333211 00000 000000000 0123689999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCcc
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
++++++++.....|+ +|++++++..
T Consensus 221 ~~~~~l~~~~~~~g~----~~~i~~~~~~ 245 (248)
T PRK07806 221 AEVARAVTAPVPSGH----IEYVGGADYF 245 (248)
T ss_pred HHHHHHhhccccCcc----EEEecCccce
Confidence 999999997655555 9999998753
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-23 Score=172.04 Aligned_cols=223 Identities=20% Similarity=0.158 Sum_probs=152.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeee-cCCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHHh---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA-THHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK--- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~-~~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~--- 73 (300)
|.+++++||||+|+||+++++.|+++| ++|++ ..|+.++...+.+ ..+..+.++.+|++|++++..+++.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g---~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEG---YDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDE 78 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999 88776 4666544333322 2245677889999999987766654
Q ss_pred -cCCCCEEEEcccccCccccc----cChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 -FGQPDVVVNCAALSVPRVCE----NDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 -~~~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+|||+||........ +..+..+++|+.+++ .+++++.+ .+.++||++||...+.+.+
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-------- 149 (250)
T PRK08063 79 EFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALL-FCAQEAAKLMEKVGGGKIISLSSLGSIRYLE-------- 149 (250)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCeEEEEEcchhhccCCC--------
Confidence 46899999999975432221 223456789999986 77766654 4567999999976654432
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
+...|+.+|.+.+.+++.++. ++++++|+.+..+.... .+.. ..+..... .. .....+++
T Consensus 150 --~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~-~~~~--~~~~~~~~-~~-------~~~~~~~~ 216 (250)
T PRK08063 150 --NYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKH-FPNR--EELLEDAR-AK-------TPAGRMVE 216 (250)
T ss_pred --CccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhh-ccCc--hHHHHHHh-cC-------CCCCCCcC
Confidence 267899999999999887643 56779999887654211 1110 11111111 11 11234789
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++|++++++++++.+... ..++.++++++..
T Consensus 217 ~~dva~~~~~~~~~~~~~--~~g~~~~~~gg~~ 247 (250)
T PRK08063 217 PEDVANAVLFLCSPEADM--IRGQTIIVDGGRS 247 (250)
T ss_pred HHHHHHHHHHHcCchhcC--ccCCEEEECCCee
Confidence 999999999999764321 1134888888754
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-23 Score=170.96 Aligned_cols=212 Identities=17% Similarity=0.142 Sum_probs=152.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-CCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-PHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
+++++|||||+|+||+++++.|+++| ++|++++|++++.....+.+ ......+.+|+.|.+++..+++ .+++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARG---ARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCC---CeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 35799999999999999999999999 89999999865544333222 2345667899999888766655 3568
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+|||+++...... ..+.+...+.+|+.++. ++++++. +.+.+++|++||...+++... .
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------~ 151 (239)
T PRK12828 83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTL-NASKAALPALTASGGGRIVNIGAGAALKAGPG----------M 151 (239)
T ss_pred cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHH-HHHHHHHHHHHhcCCCEEEEECchHhccCCCC----------c
Confidence 999999999653221 12234566889999996 7777664 456789999999988766433 6
Q ss_pred ChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.+|.+.+.+++.+. .++.++||+.++++...... .......|++++|+
T Consensus 152 ~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~---------------------~~~~~~~~~~~~dv 210 (239)
T PRK12828 152 GAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADM---------------------PDADFSRWVTPEQI 210 (239)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcC---------------------CchhhhcCCCHHHH
Confidence 689999999988886553 35778999999876321000 00112247899999
Q ss_pred HHHHHHHHhccccccccccceeeecCCCc
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+++++++++..... ..+..+++.++..
T Consensus 211 a~~~~~~l~~~~~~--~~g~~~~~~g~~~ 237 (239)
T PRK12828 211 AAVIAFLLSDEAQA--ITGASIPVDGGVA 237 (239)
T ss_pred HHHHHHHhCccccc--ccceEEEecCCEe
Confidence 99999999864322 1133788887754
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-23 Score=173.57 Aligned_cols=226 Identities=18% Similarity=0.183 Sum_probs=153.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCC-ceeEEEeecCCchhHHHHHHh----cC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH-SFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
|+++++|||||+|+||+++++.|+++| ++|+++.|+++....+.+..+. .+.++.+|++|++++..+++. ++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAG---ARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFG 85 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 356899999999999999999999999 8999999986655544433322 456789999999987666653 46
Q ss_pred CCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhh----hccC-CeEEEeeccccccCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFT----ENKE-NLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 76 ~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~-~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++|+|||+||.... ....+.+...+++|+.++. .+++.+. ..+. ++++++||.....+.+.
T Consensus 86 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~~-------- 156 (264)
T PRK12829 86 GLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQF-YFARAAVPLLKASGHGGVIIALSSVAGRLGYPG-------- 156 (264)
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCCeEEEEecccccccCCCC--------
Confidence 89999999997622 1122345778999999996 7766653 3444 57888888654333222
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCC------CchHHHHHHHHhcCCceeeccCcc
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPK------SLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.+|.+.|.+++.++ .+++++||+.++|+......+. .....+..... . ....
T Consensus 157 --~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~ 226 (264)
T PRK12829 157 --RTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYL-E-------KISL 226 (264)
T ss_pred --CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHH-h-------cCCC
Confidence 4579999999999887754 3578899999998863211000 00000000000 0 0123
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+.+++++|+++++..++...... ..+..|++++|..
T Consensus 227 ~~~~~~~d~a~~~~~l~~~~~~~--~~g~~~~i~~g~~ 262 (264)
T PRK12829 227 GRMVEPEDIAATALFLASPAARY--ITGQAISVDGNVE 262 (264)
T ss_pred CCCCCHHHHHHHHHHHcCccccC--ccCcEEEeCCCcc
Confidence 46899999999999988653221 1133899988753
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-23 Score=172.50 Aligned_cols=226 Identities=17% Similarity=0.173 Sum_probs=150.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHHh--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVALK-- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~-- 73 (300)
|.+|++|||||+|+||+++++.|+++| ++|+++.|+++....+.+.+ ...+.++.+|++|++++..+++.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g---~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAG---GIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSA 78 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999 89999999876654443332 12355679999999987776653
Q ss_pred --cCCCCEEEEcccccCc-------cccccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccCCCCCCC
Q 022280 74 --FGQPDVVVNCAALSVP-------RVCENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 74 --~~~~d~vih~a~~~~~-------~~~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
++++|+|||||+.... ....+.+...+++|+.+++ .+ ++.+++.+.++||++||...+........
T Consensus 79 ~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~ 157 (256)
T PRK09186 79 EKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSF-LFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFEIY 157 (256)
T ss_pred HHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHH-HHHHHHHHHHHhcCCceEEEEechhhhccccchhc
Confidence 4569999999975321 1112234667889998885 44 44444567779999999765543322233
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
|+.+..+...|+.||.+.+.+.+.++. ++.+++|+.++++.. ..+.. ...... ...
T Consensus 158 ~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~---------~~~~~-~~~~~~-------~~~ 220 (256)
T PRK09186 158 EGTSMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP---------EAFLN-AYKKCC-------NGK 220 (256)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC---------HHHHH-HHHhcC-------Ccc
Confidence 444433345799999999998875543 456788887764321 11111 111111 123
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+++++|+|+++++++...... ..+..+++.+|.
T Consensus 221 ~~~~~~dva~~~~~l~~~~~~~--~~g~~~~~~~g~ 254 (256)
T PRK09186 221 GMLDPDDICGTLVFLLSDQSKY--ITGQNIIVDDGF 254 (256)
T ss_pred CCCCHHHhhhhHhheecccccc--ccCceEEecCCc
Confidence 5789999999999999764321 112367777653
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=169.35 Aligned_cols=229 Identities=17% Similarity=0.140 Sum_probs=160.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-CCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-PHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++++|||||||+||+++++.|+++| ++|++++|+++....+.+.+ ...+.++++|+.|.+++...++ +++++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAG---DRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999 89999999876655554433 2356778999999998765554 34679
Q ss_pred CEEEEcccccCcccc----ccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRVC----ENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+|||++|....... .+.+...+.+|+.+++ .+++++. +.+.+++|++||...+... . ..
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-~----------~~ 146 (257)
T PRK07074 79 DVLVANAGAARAASLHDTTPASWRADNALNLEAAY-LCVEAVLEGMLKRSRGAVVNIGSVNGMAAL-G----------HP 146 (257)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCeEEEEEcchhhcCCC-C----------Cc
Confidence 999999997543211 1223455779999886 7766663 3556789999996543221 1 34
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.+|.+.+.+++.++ .++.++||+.+.++........ ...+..... . ....++|++++|++
T Consensus 147 ~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~-~-------~~~~~~~~~~~d~a 216 (257)
T PRK07074 147 AYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAA--NPQVFEELK-K-------WYPLQDFATPDDVA 216 (257)
T ss_pred ccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhccccc--ChHHHHHHH-h-------cCCCCCCCCHHHHH
Confidence 79999999999888765 3567899999887653211110 111221111 1 12346899999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCccCHHHHHH
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
++++++++..... ..+.++++.+|...+.+|+.+
T Consensus 217 ~~~~~l~~~~~~~--~~g~~~~~~~g~~~~~~~~~~ 250 (257)
T PRK07074 217 NAVLFLASPAARA--ITGVCLPVDGGLTAGNREMAR 250 (257)
T ss_pred HHHHHHcCchhcC--cCCcEEEeCCCcCcCChhhhh
Confidence 9999999753221 113388999998888898875
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-23 Score=172.16 Aligned_cols=225 Identities=16% Similarity=0.117 Sum_probs=155.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
|.++++|||||+|+||++++++|+++| ++|++++|+.+....+.+. .+..+.++++|++|.++++.+++.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEG---AKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999 8999999986554443322 245677899999999887766543
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+|||+|+...... ....++..+++|+.+++ .+++++. +.+.+++|++||...+.+...
T Consensus 78 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~~-------- 148 (250)
T TIGR03206 78 LGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGAL-HMHHAVLPGMVERGAGRIVNIASDAARVGSSG-------- 148 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCeEEEEECchhhccCCCC--------
Confidence 457999999998653221 12234567899999996 7766654 456679999999888766544
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCC-CCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPV-PKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.+|.+.+.+++.++ .++.++||+.++++...... ....+..+..... ... ....+..
T Consensus 149 --~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~ 218 (250)
T TIGR03206 149 --EAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFT-RAI-------PLGRLGQ 218 (250)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHH-hcC-------CccCCcC
Confidence 6689999999888887653 35688999998877421100 0001111111111 111 1224567
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++|+|+++.+++...... ..++++++++|.
T Consensus 219 ~~dva~~~~~l~~~~~~~--~~g~~~~~~~g~ 248 (250)
T TIGR03206 219 PDDLPGAILFFSSDDASF--ITGQVLSVSGGL 248 (250)
T ss_pred HHHHHHHHHHHcCcccCC--CcCcEEEeCCCc
Confidence 899999999998763221 113388988763
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-23 Score=185.02 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=160.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC------------CCceeEEEeecCCchhHHH
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL------------PHSFVFFDVDLKSGSGFDA 69 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~~~~ 69 (300)
.+++||||||+|+||++++++|+++| ++|++++|+.+....+...+ ..++.++++|++|.+++..
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G---~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG---FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 46789999999999999999999999 89999999876655443321 1347789999999877666
Q ss_pred HHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 70 VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 70 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
.+ +++|+|||++|..... ..++...+++|+.|+. +++++|.+.+++|||++||..++... ..+. ......
T Consensus 156 aL---ggiDiVVn~AG~~~~~--v~d~~~~~~VN~~Gt~-nLl~Aa~~agVgRIV~VSSiga~~~g---~p~~-~~~sk~ 225 (576)
T PLN03209 156 AL---GNASVVICCIGASEKE--VFDVTGPYRIDYLATK-NLVDAATVAKVNHFILVTSLGTNKVG---FPAA-ILNLFW 225 (576)
T ss_pred Hh---cCCCEEEEcccccccc--ccchhhHHHHHHHHHH-HHHHHHHHhCCCEEEEEccchhcccC---cccc-chhhHH
Confidence 54 4899999999865321 1235567889999996 99999999999999999998763111 0011 122345
Q ss_pred hhHHHHHHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceee-ccC-cccCceeHHHHHHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEF-FHD-ECRCPVYVRDVVKIILA 227 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~v~D~a~~~~~ 227 (300)
.|...|..+|+.+...+.+|+++||+.++++.+..... ..+.. .++ .....+..+|+|+++++
T Consensus 226 ~~~~~KraaE~~L~~sGIrvTIVRPG~L~tp~d~~~~t---------------~~v~~~~~d~~~gr~isreDVA~vVvf 290 (576)
T PLN03209 226 GVLCWKRKAEEALIASGLPYTIVRPGGMERPTDAYKET---------------HNLTLSEEDTLFGGQVSNLQVAELMAC 290 (576)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEECCeecCCccccccc---------------cceeeccccccCCCccCHHHHHHHHHH
Confidence 68889999999999999999999999998774321100 00111 111 12346889999999999
Q ss_pred HHhccc-cccccccceeeecCCCc---cCHHHHHH
Q 022280 228 LTNRWL-SEDKQMQLLLNVGGPDR---VSRVQMAE 258 (300)
Q Consensus 228 ~~~~~~-~~~~~~~~i~ni~~~~~---~s~~e~~~ 258 (300)
++.++. ..++ +|.+.++.. .++.++..
T Consensus 291 Lasd~~as~~k----vvevi~~~~~p~~~~~~~~~ 321 (576)
T PLN03209 291 MAKNRRLSYCK----VVEVIAETTAPLTPMEELLA 321 (576)
T ss_pred HHcCchhccce----EEEEEeCCCCCCCCHHHHHH
Confidence 998653 3333 888877653 34555444
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-23 Score=172.81 Aligned_cols=227 Identities=18% Similarity=0.202 Sum_probs=153.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----C-CceeEEEeecCCchhHHHHHHh----
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----P-HSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
+++||||||+|+||+++++.|+++| ++|++++|+.+....+.+.+ + ..+.++.+|+++.+++..++++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g---~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 78 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEG---YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEI 78 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999 89999999865544443321 1 3577889999998887665543
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeecccc-ccCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQV-YEGVKSFYKEED 143 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~-~~~~~~~~~E~~ 143 (300)
++++|+|||+||...... ..+.++..+++|+.+++ .+++++.+ .+ .+++|++||... ++. .
T Consensus 79 ~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~-~------- 149 (259)
T PRK12384 79 FGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYF-LCAREFSRLMIRDGIQGRIIQINSKSGKVGS-K------- 149 (259)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHH-HHHHHHHHHHHhCCCCcEEEEecCcccccCC-C-------
Confidence 578999999999764322 22245677899999986 66665543 45 359999998653 332 1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh-cCCceeec--cCccc
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLS-KGEKVEFF--HDECR 213 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~ 213 (300)
....|+.||++.+.+++.++ .++.++||+.++++.... .+...+...... .+.....+ +.+.+
T Consensus 150 ---~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (259)
T PRK12384 150 ---HNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQ----SLLPQYAKKLGIKPDEVEQYYIDKVPLK 222 (259)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhh----hhhHHHHHhcCCChHHHHHHHHHhCccc
Confidence 25689999999988877654 357889999887654321 111111111000 00000111 22457
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++++++|+++++++++..... ...+.+||+++|+.
T Consensus 223 ~~~~~~dv~~~~~~l~~~~~~--~~~G~~~~v~~g~~ 257 (259)
T PRK12384 223 RGCDYQDVLNMLLFYASPKAS--YCTGQSINVTGGQV 257 (259)
T ss_pred CCCCHHHHHHHHHHHcCcccc--cccCceEEEcCCEE
Confidence 899999999999999876422 11234899998764
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=171.02 Aligned_cols=219 Identities=20% Similarity=0.187 Sum_probs=156.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++++||||+|+||+++++.|+++| ++|++++|+++....+.+.. ...++.+|+++.+++...++..+++|+||
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g---~~V~~~~r~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~d~vi 82 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRG---ARVVAAARNAAALDRLAGET--GCEPLRLDVGDDAAIRAALAAAGAFDGLV 82 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHh--CCeEEEecCCCHHHHHHHHHHhCCCCEEE
Confidence 35799999999999999999999999 89999999866555444432 24567899999988888888777899999
Q ss_pred EcccccCccc----cccChhhhhhcccccchHHHHHhhhhc----c-CCeEEEeeccccccCCCCCCCCCCCCCCCChhH
Q 022280 82 NCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN----K-ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYG 152 (300)
Q Consensus 82 h~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~ 152 (300)
|+||...... ....++..+.+|+.+++ ++++++.+. + .++||++||...+.+... ...|+
T Consensus 83 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------~~~y~ 151 (245)
T PRK07060 83 NCAGIASLESALDMTAEGFDRVMAVNARGAA-LVARHVARAMIAAGRGGSIVNVSSQAALVGLPD----------HLAYC 151 (245)
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCCcEEEEEccHHHcCCCCC----------CcHhH
Confidence 9999764321 22345667889999996 777776542 2 368999999877665433 67899
Q ss_pred HHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHH
Q 022280 153 KSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKII 225 (300)
Q Consensus 153 ~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 225 (300)
.+|.+++.+++.++ .++..+||+.++++........ . ....... .. ...+.+++++|+++++
T Consensus 152 ~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~--~-~~~~~~~-~~-------~~~~~~~~~~d~a~~~ 220 (245)
T PRK07060 152 ASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSD--P-QKSGPML-AA-------IPLGRFAEVDDVAAPI 220 (245)
T ss_pred HHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccC--H-HHHHHHH-hc-------CCCCCCCCHHHHHHHH
Confidence 99999999887664 3567799999988753211110 0 1111111 11 1234689999999999
Q ss_pred HHHHhccccccccccceeeecCCC
Q 022280 226 LALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.++++.+... ..++++++.+|.
T Consensus 221 ~~l~~~~~~~--~~G~~~~~~~g~ 242 (245)
T PRK07060 221 LFLLSDAASM--VSGVSLPVDGGY 242 (245)
T ss_pred HHHcCcccCC--ccCcEEeECCCc
Confidence 9999864322 123488887763
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=169.64 Aligned_cols=221 Identities=19% Similarity=0.204 Sum_probs=153.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhh---cCCCceeEEEeecCCchhHHHHHHh----c
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
+|++|||||+|+||+++++.|+++| ++|++++|+... .....+ ..+.++.++++|+++++++..+++. +
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAG---FDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAW 78 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC---CEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999 899999887432 222222 1234677889999999887665553 4
Q ss_pred CCCCEEEEcccccCcc------ccccChhhhhhcccccchHHHHHhhhhc-----c-----CCeEEEeeccccccCCCCC
Q 022280 75 GQPDVVVNCAALSVPR------VCENDPDSAMSINVPSSLVNWLSSFTEN-----K-----ENLLIHLSTDQVYEGVKSF 138 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~~l~~~~~~~-----~-----~~~~v~~SS~~~~~~~~~~ 138 (300)
+++|+||||||..... .+...++..+++|+.+++ ++++++... + .++||++||...+.+...
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~- 156 (256)
T PRK12745 79 GRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPF-FLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPN- 156 (256)
T ss_pred CCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHH-HHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCCC-
Confidence 6899999999975321 122345678999999996 777776432 1 457999999877654433
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCc
Q 022280 139 YKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE 211 (300)
Q Consensus 139 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
.+.|+.+|.+.+.+++.++ .+++++||+.+.++.... ....+ ...+... . ..
T Consensus 157 ---------~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~-----~~~~~-~~~~~~~-~-----~~ 215 (256)
T PRK12745 157 ---------RGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAP-----VTAKY-DALIAKG-L-----VP 215 (256)
T ss_pred ---------CcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccc-----cchhH-Hhhhhhc-C-----CC
Confidence 6789999999999887664 357889999988764321 11111 1111111 0 12
Q ss_pred ccCceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 212 CRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
...+.+++|+++++.+++...... ..+.+|+++++...
T Consensus 216 ~~~~~~~~d~a~~i~~l~~~~~~~--~~G~~~~i~gg~~~ 253 (256)
T PRK12745 216 MPRWGEPEDVARAVAALASGDLPY--STGQAIHVDGGLSI 253 (256)
T ss_pred cCCCcCHHHHHHHHHHHhCCcccc--cCCCEEEECCCeec
Confidence 346789999999999988653221 12348999887554
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=167.68 Aligned_cols=216 Identities=17% Similarity=0.184 Sum_probs=151.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC----chhhhhh---cCCCceeEEEeecCCchhHHHHHHh-
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP----LPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~----~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~- 73 (300)
++|+++||||+|+||+++++.|+++| ++|+++.|... ....+.. ..+..+.++.+|++|.+++..+++.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADG---ADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAG 81 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 56899999999999999999999999 88888665422 2222222 2234677889999999887766643
Q ss_pred ---cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh-----hccCCeEEEeeccccccCCCCCCCC
Q 022280 74 ---FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT-----ENKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 74 ---~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
++++|+|||+||..... .+.+.+...+++|+.++. .+++++. +.+.+++|++||...+.+...
T Consensus 82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---- 156 (249)
T PRK12827 82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFF-NVTQAALPPMIRARRGGRIVNIASVAGVRGNRG---- 156 (249)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHH-HHHHHHHHHHHhcCCCeEEEEECCchhcCCCCC----
Confidence 46899999999976522 223345678899999996 8888877 456679999999877655433
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.+|.+.+.+++.++ .+++++||+.+.++...... +. .... ...+ ...
T Consensus 157 ------~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~----~~---~~~~-~~~~-------~~~ 215 (249)
T PRK12827 157 ------QVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAA----PT---EHLL-NPVP-------VQR 215 (249)
T ss_pred ------CchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccc----hH---HHHH-hhCC-------CcC
Confidence 6789999999998877653 36788999999987532211 11 1111 1111 123
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
+.+++|+++++.+++...... ..+.++++.+|
T Consensus 216 ~~~~~~va~~~~~l~~~~~~~--~~g~~~~~~~g 247 (249)
T PRK12827 216 LGEPDEVAALVAFLVSDAASY--VTGQVIPVDGG 247 (249)
T ss_pred CcCHHHHHHHHHHHcCcccCC--ccCcEEEeCCC
Confidence 457999999999998653221 11337888765
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=171.28 Aligned_cols=222 Identities=13% Similarity=0.103 Sum_probs=149.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-Cchhhhhh---cCCCceeEEEeecCCchhHHHHHHh----c
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
++++|||||+|+||++++++|+++| ++|++..|+. +....... ..+....++.+|+++++++..+++. +
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEG---SLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRY 82 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHc
Confidence 5799999999999999999999999 8887766543 22222211 1233456788999999876665543 5
Q ss_pred CCCCEEEEcccccCccccc----cChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRVCE----NDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+++|+|||+||........ ...+..+++|+.+++ .+++++.+. ..++||++||...+.+.+. .
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------~ 151 (252)
T PRK06077 83 GVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVI-YCSQELAKEMREGGAIVNIASVAGIRPAYG----------L 151 (252)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHH-HHHHHHHHHhhcCcEEEEEcchhccCCCCC----------c
Confidence 6899999999974432211 123567899999986 777777652 2358999999888765433 7
Q ss_pred ChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
+.|+.+|.+.+.+++.++. .+.+++|+.+.++....... . . ......... .+ .....+++++|+|
T Consensus 152 ~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~-~-~-~~~~~~~~~--~~----~~~~~~~~~~dva 222 (252)
T PRK06077 152 SIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFK-V-L-GMSEKEFAE--KF----TLMGKILDPEEVA 222 (252)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhh-c-c-cccHHHHHH--hc----CcCCCCCCHHHHH
Confidence 7999999999998887654 34567777766543210000 0 0 000000000 00 1234689999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCcc
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
++++.+++.....++ +||+++|..+
T Consensus 223 ~~~~~~~~~~~~~g~----~~~i~~g~~~ 247 (252)
T PRK06077 223 EFVAAILKIESITGQ----VFVLDSGESL 247 (252)
T ss_pred HHHHHHhCccccCCC----eEEecCCeec
Confidence 999999986544444 8999998654
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=169.96 Aligned_cols=217 Identities=17% Similarity=0.174 Sum_probs=150.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
.++++|||||+|+||++++++|+++| ++|+++.++ ++......+. .+..+.++.+|+++++++..++++
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g---~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEG---AKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 888876554 3333333222 234577899999999987766654
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++.+|+|||+||...... ..+.++..+++|+.++. .+++++.. .+.+++|++||...+.+..
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--------- 151 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVF-NTTSAVLPYITEAEEGRIISISSIIGQAGGF--------- 151 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEEcchhhcCCCC---------
Confidence 567999999999754321 22356678899999996 77777664 3456999999976544332
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
+...|+.+|.+.+.+++.+. .++++++|+.+.++... ..+........ . +.+.+++.++
T Consensus 152 -~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~-----~~~~~~~~~~~-~-------~~~~~~~~~~ 217 (247)
T PRK12935 152 -GQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVA-----EVPEEVRQKIV-A-------KIPKKRFGQA 217 (247)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhh-----hccHHHHHHHH-H-------hCCCCCCcCH
Confidence 36789999999988876653 35678888888654311 11111111111 1 1234578999
Q ss_pred HHHHHHHHHHHhccc-cccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWL-SEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~-~~~~~~~~i~ni~~~~ 249 (300)
+|++++++++++... .. +.+||++++.
T Consensus 218 edva~~~~~~~~~~~~~~----g~~~~i~~g~ 245 (247)
T PRK12935 218 DEIAKGVVYLCRDGAYIT----GQQLNINGGL 245 (247)
T ss_pred HHHHHHHHHHcCcccCcc----CCEEEeCCCc
Confidence 999999999987531 22 3389998874
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=168.63 Aligned_cols=207 Identities=16% Similarity=0.082 Sum_probs=145.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++++++||||+|+||++++++|+++| ++|++++|+.+......++++..+.++++|++|.+++..+++ .++++
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEG---ARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRL 81 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45799999999999999999999999 899999998665555555555667788999999887655543 34689
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccc-cccCCCCCCCCCCCCCCCCh
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQ-VYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~-~~~~~~~~~~E~~~~~p~~~ 150 (300)
|+|||+||..... .+.+.++..+++|+.++. ++++++.. ...+++|++||.. .++. + ....
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~i~~~S~~~~~~~-~----------~~~~ 149 (249)
T PRK06500 82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPY-FLIQALLPLLANPASIVLNGSINAHIGM-P----------NSSV 149 (249)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhcCCEEEEEechHhccCC-C----------CccH
Confidence 9999999975432 223456678999999996 88888875 2335788887754 3432 2 2578
Q ss_pred hHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCC-CCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 151 YGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTIS-PVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
|+.+|.+.|.+++.++ .++.++||+.+++|.... ..+......+... +....+ ...+.+++|++
T Consensus 150 Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~va 221 (249)
T PRK06500 150 YAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQ-IQALVP-------LGRFGTPEEIA 221 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHH-HHhcCC-------CCCCcCHHHHH
Confidence 9999999999996553 356889999998874211 0111111112221 111111 22356899999
Q ss_pred HHHHHHHhc
Q 022280 223 KIILALTNR 231 (300)
Q Consensus 223 ~~~~~~~~~ 231 (300)
+++.+++..
T Consensus 222 ~~~~~l~~~ 230 (249)
T PRK06500 222 KAVLYLASD 230 (249)
T ss_pred HHHHHHcCc
Confidence 999999875
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=171.64 Aligned_cols=233 Identities=18% Similarity=0.193 Sum_probs=154.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHH----hc
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+.+....+.+.+ ..++.++++|++|.+++.++++ .+
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHG---AKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999 89999998765544444433 2357789999999988766554 45
Q ss_pred CCCCEEEEcccccCcc------ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR------VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
+++|+||||||..... .+.++++..+++|+.+++ ++++++.. .+.+++|++||....-+...
T Consensus 93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~------- 164 (280)
T PLN02253 93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVF-LGMKHAARIMIPLKKGSIVSLCSVASAIGGLG------- 164 (280)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHH-HHHHHHHHHHHhcCCceEEEecChhhcccCCC-------
Confidence 7899999999975321 123456788999999996 77776653 34458999988654322212
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCc-hHHHHH---HHHhcCCceeeccCccc
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSL-PIQWID---SVLSKGEKVEFFHDECR 213 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+.|.+++.++. ++..++|+.+..+......+... ....+. ........ ...
T Consensus 165 ---~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~ 235 (280)
T PLN02253 165 ---PHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNAN------LKG 235 (280)
T ss_pred ---CcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCC------CcC
Confidence 45799999999999987654 44678888887653211111110 000110 00100000 012
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHH
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e 255 (300)
..++++|+++++++++...... ..+.++++.+|...+..+
T Consensus 236 ~~~~~~dva~~~~~l~s~~~~~--i~G~~i~vdgG~~~~~~~ 275 (280)
T PLN02253 236 VELTVDDVANAVLFLASDEARY--ISGLNLMIDGGFTCTNHS 275 (280)
T ss_pred CCCCHHHHHHHHHhhcCccccc--ccCcEEEECCchhhccch
Confidence 3578999999999998753221 113378888876554443
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=171.40 Aligned_cols=220 Identities=15% Similarity=0.065 Sum_probs=151.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|++++++||||+|+||++++++|+++| ++|+++.|+.++...+.. ..+.++.+|++|.++++.+++ .+++
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G---~~V~~~~r~~~~l~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQG---YTVYGAARRVDKMEDLAS---LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHh---CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 678999999999999999999999999 899999998665544432 346778999999998776665 3568
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccch---HHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSL---VNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~---~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
+|+|||+||...... ..+.++..+++|+.+++ ..+++.+++.+.+++|++||...+.+.+. ..
T Consensus 75 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~----------~~ 144 (273)
T PRK06182 75 IDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYTPL----------GA 144 (273)
T ss_pred CCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCCCC----------cc
Confidence 999999999764322 23456778899998864 24555666677789999999765433222 45
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCC-------CCchHHHH---HHHHhcCCceeeccCcc
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVP-------KSLPIQWI---DSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~~ 212 (300)
.|+.||.+.+.+.+.++ .++.++||+.+..+....... ........ ...+.. ....
T Consensus 145 ~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 217 (273)
T PRK06182 145 WYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRS-------TYGS 217 (273)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHH-------hhcc
Confidence 79999999999876543 367889999998764210000 00000000 000000 0123
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
+.+.+++|+|++++.+++...... .|+++.+
T Consensus 218 ~~~~~~~~vA~~i~~~~~~~~~~~-----~~~~g~~ 248 (273)
T PRK06182 218 GRLSDPSVIADAISKAVTARRPKT-----RYAVGFG 248 (273)
T ss_pred ccCCCHHHHHHHHHHHHhCCCCCc-----eeecCcc
Confidence 467899999999999998633221 5666554
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-23 Score=174.64 Aligned_cols=187 Identities=22% Similarity=0.216 Sum_probs=138.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch---hhhh---h-------cCCCceeEEEeecCCch-----
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP---QLLL---D-------ALPHSFVFFDVDLKSGS----- 65 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~---~~~~---~-------~~~~~~~~~~~D~~~~~----- 65 (300)
+++|+||||||+|.+|+.+|+.+-. .+|+|+.|..+.. ..+. . ...++++.+.+|+..++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~--~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~ 78 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSE 78 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC--CcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCH
Confidence 4799999999999999999999875 6899999986522 2222 2 23467888999998655
Q ss_pred -hHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-----CC
Q 022280 66 -GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-----FY 139 (300)
Q Consensus 66 -~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-----~~ 139 (300)
.+..+.+ .+|.|||+|+....- ....+....||.|+. ++++.|...++|.+.|+||++++..... ..
T Consensus 79 ~~~~~La~---~vD~I~H~gA~Vn~v---~pYs~L~~~NVlGT~-evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~ 151 (382)
T COG3320 79 RTWQELAE---NVDLIIHNAALVNHV---FPYSELRGANVLGTA-EVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDF 151 (382)
T ss_pred HHHHHHhh---hcceEEecchhhccc---CcHHHhcCcchHhHH-HHHHHHhcCCCceeEEEeeeeeccccccCCCcccc
Confidence 2444444 799999999976532 244567899999996 9999999888989999999999876543 12
Q ss_pred CCCCCC-----CCCChhHHHHHHHHHHHHHHcC---CceeEeeeeeeCCCCCCCC-CCCchHHHHHHHH
Q 022280 140 KEEDEI-----APVNVYGKSKVAAEKFIYEKCS---NFAILRSSIIYGPQTISPV-PKSLPIQWIDSVL 199 (300)
Q Consensus 140 ~E~~~~-----~p~~~Y~~sK~~~e~~~~~~~~---~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~ 199 (300)
+|+++. .+.++|++||..+|.++++.+. +++|+||++|.|+...+.. ...++..++..++
T Consensus 152 ~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~rGLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~ 220 (382)
T COG3320 152 DEISPTRNVGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLL 220 (382)
T ss_pred ccccccccccCccCCCcchhHHHHHHHHHHHhhcCCCeEEEecCeeeccCccCccccchHHHHHHHHHH
Confidence 222222 3567999999999999998754 7999999999998763322 2233344444444
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=171.75 Aligned_cols=211 Identities=11% Similarity=0.080 Sum_probs=145.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|+++++|||||+|+||+++++.|+++| ++|++++|+.+......+.+ +..+.++.+|++|.+++..+++ .
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G---~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRG---ARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999999 89999999866555443332 3356778999999998766654 3
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hcc-CCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENK-ENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+|||+||...... ..+.++..+++|+.+++ .+++++. +.+ .+++|++||...+.+...
T Consensus 81 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~~------- 152 (275)
T PRK05876 81 LGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSI-HTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAG------- 152 (275)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCCCEEEEeCChhhccCCCC-------
Confidence 578999999999754322 22345677899999996 7777654 344 468999999887765433
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCc
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCP 215 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 215 (300)
...|+.||.+++.+.+.+. .++.+++|+.+.++...... ................+. ..+++
T Consensus 153 ---~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (275)
T PRK05876 153 ---LGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSE------RIRGAACAQSSTTGSPGPLPLQDDN 223 (275)
T ss_pred ---CchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchh------hhcCccccccccccccccccccccC
Confidence 6789999998666555433 35678899888765321100 000000000011111222 34678
Q ss_pred eeHHHHHHHHHHHHhc
Q 022280 216 VYVRDVVKIILALTNR 231 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~ 231 (300)
++++|+|+.++.++++
T Consensus 224 ~~~~dva~~~~~ai~~ 239 (275)
T PRK05876 224 LGVDDIAQLTADAILA 239 (275)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999987
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-22 Score=166.30 Aligned_cols=221 Identities=21% Similarity=0.198 Sum_probs=152.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhhhcCCCceeEEEeecCCchhHHHHHHh----cC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
|+++++|||||+|+||++++++|+++| ++|++++|+.. .........+..+.++++|+++.+++..+++. ++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G---~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAG---ADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999 89999998742 12222233345677899999999987766543 46
Q ss_pred CCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++|+|||+||...... ..+.++..+++|+.+++ .+++++.. .+ .+++|++||...+.+...
T Consensus 80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~--------- 149 (248)
T TIGR01832 80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVF-FLTQAAAKHFLKQGRGGKIINIASMLSFQGGIR--------- 149 (248)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCCeEEEEEecHHhccCCCC---------
Confidence 8999999999764321 22345677899999986 77776643 33 469999999888766433
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.+|.+.+.+++.++. ++.+++|+.+..+......+ . ........ .. .....++.++
T Consensus 150 -~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~--~~~~~~~~-~~-------~~~~~~~~~~ 217 (248)
T TIGR01832 150 -VPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRA-D--EDRNAAIL-ER-------IPAGRWGTPD 217 (248)
T ss_pred -CchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhcccc-C--hHHHHHHH-hc-------CCCCCCcCHH
Confidence 56899999999998877643 45778998887653211000 0 01111111 11 1234689999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
|+|+++++++...... ..+.++.+.+|
T Consensus 218 dva~~~~~l~s~~~~~--~~G~~i~~dgg 244 (248)
T TIGR01832 218 DIGGPAVFLASSASDY--VNGYTLAVDGG 244 (248)
T ss_pred HHHHHHHHHcCccccC--cCCcEEEeCCC
Confidence 9999999999753321 11226666655
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-22 Score=168.26 Aligned_cols=220 Identities=15% Similarity=0.177 Sum_probs=151.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-Cchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
++|++|||||+|+||+++++.|+++| ++|+++.++. +....+... .+..+.++.+|++|.+++.++++.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 84 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHG---FDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAA 84 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999 8888877653 223323222 245677789999999987776654
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||..... ...+.++..+++|+.+++ .+++.+.. .+.+++|+++|...+.+.+.
T Consensus 85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~p~-------- 155 (258)
T PRK09134 85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPF-VLAQAFARALPADARGLVVNMIDQRVWNLNPD-------- 155 (258)
T ss_pred cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCceEEEECchhhcCCCCC--------
Confidence 46799999999975432 223345778999999996 77777665 23458898888766554332
Q ss_pred CCCChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+++.+.+.++. ++..++|+.+..... .....+ .... ... ......+++
T Consensus 156 --~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~------~~~~~~-~~~~-~~~-------~~~~~~~~~ 218 (258)
T PRK09134 156 --FLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGR------QSPEDF-ARQH-AAT-------PLGRGSTPE 218 (258)
T ss_pred --chHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcc------cChHHH-HHHH-hcC-------CCCCCcCHH
Confidence 45899999999998887653 345577776654321 111111 1111 111 112357799
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccCHH
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRV 254 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~ 254 (300)
|+|++++++++.+...++ .|++.++..+++.
T Consensus 219 d~a~~~~~~~~~~~~~g~----~~~i~gg~~~~~~ 249 (258)
T PRK09134 219 EIAAAVRYLLDAPSVTGQ----MIAVDGGQHLAWL 249 (258)
T ss_pred HHHHHHHHHhcCCCcCCC----EEEECCCeecccc
Confidence 999999999987655555 8899888755543
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=173.55 Aligned_cols=152 Identities=12% Similarity=0.130 Sum_probs=115.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
.++++|||||+|+||++++++|+++| ++|++++|+.+........+ +..+.++.+|++|.++++.+++. +
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALG---MKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999999 89999999865544443322 34567789999999887776653 5
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccC------CeEEEeeccccccCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKE------NLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~------~~~v~~SS~~~~~~~~~~~~ 140 (300)
+++|+||||||...... ..+.++..+++|+.|++ +++++ +.+.+. +++|++||...+.+...
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~--- 157 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVI-HGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPA--- 157 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHH-HHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCC---
Confidence 67999999999865422 22345667899999996 65555 444332 58999999887765433
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcC
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCS 167 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~ 167 (300)
...|+.+|.+.+.+++.+..
T Consensus 158 -------~~~Y~~sK~a~~~~~~~l~~ 177 (287)
T PRK06194 158 -------MGIYNVSKHAVVSLTETLYQ 177 (287)
T ss_pred -------CcchHHHHHHHHHHHHHHHH
Confidence 57899999999999887654
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-22 Score=166.33 Aligned_cols=219 Identities=16% Similarity=0.147 Sum_probs=150.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
+++++|||||+|+||+++++.|+++| +.|++..|+.++...+....+..+.++.+|+++.++++.+++ .++++
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQG---AIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGV 81 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 888888887666665554445567778999999988776654 35689
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||..... ...+.++..+++|+.+++ .+++++. +.+.++||++||...+.+.+. ..
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------~~ 150 (245)
T PRK12936 82 DILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATF-RLTRELTHPMMRRRYGRIINITSVVGVTGNPG----------QA 150 (245)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHhhccHHHH-HHHHHHHHHHHHhCCCEEEEECCHHhCcCCCC----------Cc
Confidence 9999999975432 122345678899999986 7766654 345679999999765443332 56
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.+|.+.+.+++.++ .++++++|+.+..+.... ... ......... .....+.+++|++
T Consensus 151 ~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~-----~~~-~~~~~~~~~-------~~~~~~~~~~~ia 217 (245)
T PRK12936 151 NYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGK-----LND-KQKEAIMGA-------IPMKRMGTGAEVA 217 (245)
T ss_pred chHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcc-----cCh-HHHHHHhcC-------CCCCCCcCHHHHH
Confidence 79999998888776553 356778888765432110 011 111111110 1233467899999
Q ss_pred HHHHHHHhccccccccccceeeecCCC
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++.+++...... ..++++++.+|.
T Consensus 218 ~~~~~l~~~~~~~--~~G~~~~~~~g~ 242 (245)
T PRK12936 218 SAVAYLASSEAAY--VTGQTIHVNGGM 242 (245)
T ss_pred HHHHHHcCccccC--cCCCEEEECCCc
Confidence 9999888653221 123389988764
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=165.64 Aligned_cols=219 Identities=16% Similarity=0.137 Sum_probs=150.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~~ 77 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+. ....+..+.++++|+++.+++.++++. ++++
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G---~~v~~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAG---AKVIGFDQAF------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPL 77 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEecch------hhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45789999999999999999999999 8999999875 112245677789999999987776653 5679
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+|||+|+...... +.+.++..+++|+.+++ .+++++. +.+.++||++||.....+.. +..
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~~----------~~~ 146 (252)
T PRK08220 78 DVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAF-NLFRAVMPQFRRQRSGAIVTVGSNAAHVPRI----------GMA 146 (252)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhCCCCEEEEECCchhccCCC----------CCc
Confidence 99999999764322 23356678999999986 7777764 34556899999976654432 267
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHH-HH---HHHHhcCCceeeccCcccCceeH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQ-WI---DSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
.|+.+|.+.+.+++.++. ++.+++|+.++++............. .+ ..... .+.+...++++
T Consensus 147 ~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 219 (252)
T PRK08220 147 AYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFK-------LGIPLGKIARP 219 (252)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHh-------hcCCCcccCCH
Confidence 899999999998876653 46789999998875321100000000 00 00010 01234568999
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+|+++++++...... ..+.++.+.+|.
T Consensus 220 ~dva~~~~~l~~~~~~~--~~g~~i~~~gg~ 248 (252)
T PRK08220 220 QEIANAVLFLASDLASH--ITLQDIVVDGGA 248 (252)
T ss_pred HHHHHHHHHHhcchhcC--ccCcEEEECCCe
Confidence 99999999999753211 112366666653
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=166.26 Aligned_cols=220 Identities=16% Similarity=0.158 Sum_probs=153.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhh---cCCCceeEEEeecCCchhHHHHHHh----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
++|++|||||+|+||.++++.|+++| ++|+++.|+.+. ...+.. ..+..+.++.+|+++.++++.+++.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G---~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEG---ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 899999887532 222222 2234567789999999887666543
Q ss_pred cCCCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++++|+|||+||..... .+.+.+...+++|+.+++ ++++++.+. ..+++|++||...|.+...
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~a~~~~~~~~g~iV~isS~~~~~~~~~--------- 191 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYF-HMTKAALPHLKQGSAIINTGSITGYEGNET--------- 191 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHhhCCeEEEEecccccCCCCC---------
Confidence 46899999999975321 122345678999999997 888887652 2358999999988876544
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+.+.+++.++. +++.++|+.++.+..... .......... .....+.+.+++
T Consensus 192 -~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~----~~~~~~~~~~--------~~~~~~~~~~~~ 258 (290)
T PRK06701 192 -LIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSD----FDEEKVSQFG--------SNTPMQRPGQPE 258 (290)
T ss_pred -cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccc----cCHHHHHHHH--------hcCCcCCCcCHH
Confidence 56799999999998887654 457788888876532111 1111121111 012345689999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|+++++++++...... -.+.++++.++.
T Consensus 259 dva~~~~~ll~~~~~~--~~G~~i~idgg~ 286 (290)
T PRK06701 259 ELAPAYVFLASPDSSY--ITGQMLHVNGGV 286 (290)
T ss_pred HHHHHHHHHcCcccCC--ccCcEEEeCCCc
Confidence 9999999999864311 112378887764
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=164.30 Aligned_cols=225 Identities=18% Similarity=0.199 Sum_probs=151.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~~ 77 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+.+.. .+..+.++++|++|.++++.++ +.++++
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G---~~v~~~~r~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 78 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAG---ARVVTTARSRPDD------LPEGVEFVAADLTTAEGCAAVARAVLERLGGV 78 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCC---CEEEEEeCChhhh------cCCceeEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 8999999975431 2345677899999998876554 445789
Q ss_pred CEEEEcccccCcc------ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR------VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 78 d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
|+|||+||..... ...+.++..+++|+.+++ .+.+. +++.+.+++|++||...+.+.. .+
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~---------~~ 148 (260)
T PRK06523 79 DILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAV-RLDRALLPGMIARGSGVIIHVTSIQRRLPLP---------ES 148 (260)
T ss_pred CEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHH-HHHHHHHHHHHhcCCcEEEEEecccccCCCC---------CC
Confidence 9999999964211 223356678899999986 55444 4445667899999987665422 13
Q ss_pred CChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCC------CCchHHHHHHHHhcCCceeeccCcccC
Q 022280 148 VNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVP------KSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.+|.+++.+++.++ .++.+++|+.+..+....... ................ +-....
T Consensus 149 ~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~~ 223 (260)
T PRK06523 149 TTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLG-----GIPLGR 223 (260)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhc-----cCccCC
Confidence 6789999999999887764 356789999988764211000 0000011111110000 012335
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+..++|+++++.+++...... ..+..+.+.+|...|
T Consensus 224 ~~~~~~va~~~~~l~s~~~~~--~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 224 PAEPEEVAELIAFLASDRAAS--ITGTEYVIDGGTVPT 259 (260)
T ss_pred CCCHHHHHHHHHHHhCccccc--ccCceEEecCCccCC
Confidence 678999999999999753211 113388888876544
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=165.94 Aligned_cols=203 Identities=14% Similarity=0.140 Sum_probs=145.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~~ 75 (300)
++++|||||+|+||+++++.|+++| ++|++++|+++....+.+. .+..+.++.+|++|.+++..+++ +++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g---~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAG---AQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999 8999999986544433322 24467778999999988766655 346
Q ss_pred CCCEEEEcccccCccc-----cccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRV-----CENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|+||||||...... ..+.+...+++|+.+++ ++++.+.. .+.+++|++||...+.+...
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 146 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAV-YCTHAALPHLKASRGQIVVVSSLAGLTGVPT---------- 146 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCEEEEEecccccCCCCC----------
Confidence 8999999999764322 12234567899999997 88887753 34469999999887765433
Q ss_pred CChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.+|.+.+.+.+.+. .++.+++|+.+..+..... .. ..+.+....+.+..++++++|
T Consensus 147 ~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~d 214 (263)
T PRK06181 147 RSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRA---------LD---GDGKPLGKSPMQESKIMSAEE 214 (263)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhh---------cc---ccccccccccccccCCCCHHH
Confidence 6789999999999887543 3567788888765432110 00 001111111223347899999
Q ss_pred HHHHHHHHHhc
Q 022280 221 VVKIILALTNR 231 (300)
Q Consensus 221 ~a~~~~~~~~~ 231 (300)
+|++++.+++.
T Consensus 215 va~~i~~~~~~ 225 (263)
T PRK06181 215 CAEAILPAIAR 225 (263)
T ss_pred HHHHHHHHhhC
Confidence 99999999986
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-22 Score=166.84 Aligned_cols=223 Identities=14% Similarity=0.109 Sum_probs=152.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++++++||||+|+||+++++.|+++| ++|++++|+.+....+.+..+..+.++++|++|.+++.++++ .++++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAG---ARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999 899999998766666655555667789999999988766554 35789
Q ss_pred CEEEEcccccCc---cccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 78 DVVVNCAALSVP---RVCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 78 d~vih~a~~~~~---~~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
|++|||||.... ....+.++..+++|+.+++ .+++.+.. .+.+++|++||.....+... ...|
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~----------~~~Y 150 (261)
T PRK08265 82 DILVNLACTYLDDGLASSRADWLAALDVNLVSAA-MLAQAAHPHLARGGGAIVNFTSISAKFAQTG----------RWLY 150 (261)
T ss_pred CEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHH-HHHHHHHHHHhcCCcEEEEECchhhccCCCC----------Cchh
Confidence 999999997532 1233456678899999986 66665543 33469999999776544332 5689
Q ss_pred HHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 152 GKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
+.+|.+.+.+.+.++. ++..++|+.+..+-... ...... ....... . .......+..++|+|++
T Consensus 151 ~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~-~~~~~~-~~~~~~~-~------~~~p~~r~~~p~dva~~ 221 (261)
T PRK08265 151 PASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDE-LSGGDR-AKADRVA-A------PFHLLGRVGDPEEVAQV 221 (261)
T ss_pred HHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhh-hcccch-hHHHHhh-c------ccCCCCCccCHHHHHHH
Confidence 9999999998887643 45667777665432100 000000 0000000 0 00123356789999999
Q ss_pred HHHHHhccccccccccceeeecCCC
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+.++++.... ...+.++.+.+|.
T Consensus 222 ~~~l~s~~~~--~~tG~~i~vdgg~ 244 (261)
T PRK08265 222 VAFLCSDAAS--FVTGADYAVDGGY 244 (261)
T ss_pred HHHHcCcccc--CccCcEEEECCCe
Confidence 9999975321 1123377777764
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=166.27 Aligned_cols=218 Identities=18% Similarity=0.090 Sum_probs=152.0
Q ss_pred EEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHHhcCCCCEEEEcc
Q 022280 7 LVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCA 84 (300)
Q Consensus 7 lItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a 84 (300)
|||||+|+||++++++|+++| ++|+++.|+++....+...+ +.+++++.+|++|++++..+++.++++|++||++
T Consensus 1 lItGas~~iG~~~a~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~a 77 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG---ARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITA 77 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECC
Confidence 699999999999999999999 89999999865554443332 3457788999999999999998887899999999
Q ss_pred cccCccc----cccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 022280 85 ALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 85 ~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
|...... ..+.++..+++|+.+++ .+.++....+.+++|++||...+.+.+. .+.|+.+|.+++.
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~g~iv~~ss~~~~~~~~~----------~~~Y~~sK~a~~~ 146 (230)
T PRK07041 78 ADTPGGPVRALPLAAAQAAMDSKFWGAY-RVARAARIAPGGSLTFVSGFAAVRPSAS----------GVLQGAINAALEA 146 (230)
T ss_pred CCCCCCChhhCCHHHHHHHHHHHHHHHH-HHHhhhhhcCCeEEEEECchhhcCCCCc----------chHHHHHHHHHHH
Confidence 9754321 23346678899999996 8888655556679999999988766543 6789999999999
Q ss_pred HHHHHcCCceeEe-----eeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccc
Q 022280 161 FIYEKCSNFAILR-----SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235 (300)
Q Consensus 161 ~~~~~~~~~~ilR-----~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~ 235 (300)
+++.++.++.-+| |+.+-.+... ..+......+..... ... ....+..++|+|++++++++.....
T Consensus 147 ~~~~la~e~~~irv~~i~pg~~~t~~~~-~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~dva~~~~~l~~~~~~~ 217 (230)
T PRK07041 147 LARGLALELAPVRVNTVSPGLVDTPLWS-KLAGDAREAMFAAAA-ERL-------PARRVGQPEDVANAILFLAANGFTT 217 (230)
T ss_pred HHHHHHHHhhCceEEEEeecccccHHHH-hhhccchHHHHHHHH-hcC-------CCCCCcCHHHHHHHHHHHhcCCCcC
Confidence 9998876543344 4443222100 000000001111111 111 1123567899999999999864443
Q ss_pred cccccceeeecCCCcc
Q 022280 236 DKQMQLLLNVGGPDRV 251 (300)
Q Consensus 236 ~~~~~~i~ni~~~~~~ 251 (300)
|+ +|++.+|..+
T Consensus 218 G~----~~~v~gg~~~ 229 (230)
T PRK07041 218 GS----TVLVDGGHAI 229 (230)
T ss_pred Cc----EEEeCCCeec
Confidence 44 8999887643
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=162.09 Aligned_cols=219 Identities=18% Similarity=0.182 Sum_probs=147.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhh---cCCCceeEEEeecCCchhHHHHHHh----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
.++++|||||||+||+++++.|+++| ++|++..|+.++ .....+ ..+..+.++.+|+++.+++..++++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQG---ANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999999 889888777543 222222 1234567788999999987766653
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+|||+||...... ..+.+...+++|+.++. ++++++.. .+.+++|++||...+.+...
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~~-------- 151 (248)
T PRK05557 81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVF-NLTKAVARPMMKQRSGRIINISSVVGLMGNPG-------- 151 (248)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCeEEEEEcccccCcCCCC--------
Confidence 458999999999754321 22345567889999986 77777664 35568999999654333222
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.+|.+.+.+++.+.. +++++||+.+..+... .....+..... .. .....+.++
T Consensus 152 --~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~-----~~~~~~~~~~~-~~-------~~~~~~~~~ 216 (248)
T PRK05557 152 --QANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTD-----ALPEDVKEAIL-AQ-------IPLGRLGQP 216 (248)
T ss_pred --CchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccc-----ccChHHHHHHH-hc-------CCCCCCcCH
Confidence 56899999999988776532 5677888776543211 11112222111 11 112347899
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+++++.+++..... ...+++|+++++.
T Consensus 217 ~~va~~~~~l~~~~~~--~~~g~~~~i~~~~ 245 (248)
T PRK05557 217 EEIASAVAFLASDEAA--YITGQTLHVNGGM 245 (248)
T ss_pred HHHHHHHHHHcCcccC--CccccEEEecCCc
Confidence 9999999988866221 1123489998764
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=164.23 Aligned_cols=220 Identities=21% Similarity=0.158 Sum_probs=153.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
.+++++||||+|+||+++++.|+++| ++|+++.|++++.....+.+ +..+.++.+|++|.++++.+++. +
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAG---ATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999999 89999988866544443322 34577889999999987776654 3
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+|||++|...... ..+.++..+++|+.+++ ++++++.+ .+.+++|++||...+.+...
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 152 (250)
T PRK12939 83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTF-LMLRAALPHLRDSGRGRIVNLASDTALWGAPK--------- 152 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCeEEEEECchhhccCCCC---------
Confidence 68999999999754321 22234567889999986 77777654 34459999999776655433
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.+|.+.+.+++.++. ++..++|+.+..+.... .+. ..+..... . ....+.+++++
T Consensus 153 -~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~-~~~---~~~~~~~~-~-------~~~~~~~~~~~ 219 (250)
T PRK12939 153 -LGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAY-VPA---DERHAYYL-K-------GRALERLQVPD 219 (250)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccc-cCC---hHHHHHHH-h-------cCCCCCCCCHH
Confidence 56799999999998886542 45678888776554211 010 01111111 1 12344678999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|++++++.++..... ...++++++++|.
T Consensus 220 dva~~~~~l~~~~~~--~~~G~~i~~~gg~ 247 (250)
T PRK12939 220 DVAGAVLFLLSDAAR--FVTGQLLPVNGGF 247 (250)
T ss_pred HHHHHHHHHhCcccc--CccCcEEEECCCc
Confidence 999999999976422 1123488888864
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-22 Score=166.07 Aligned_cols=203 Identities=17% Similarity=0.187 Sum_probs=143.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~d~ 79 (300)
|+|+||||||+||.++++.|+++| ++|++++|+++....+....+..+.++.+|++|.+++..+++ .++++|+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 77 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDV 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 689999999999999999999999 899999998766665555445567788999999988766654 3468999
Q ss_pred EEEcccccCc-----cccccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 80 VVNCAALSVP-----RVCENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 80 vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
|||+||.... ..+.+.++..+++|+.+++ .+ ++.+.+.+.+++|++||...+.+.. +...
T Consensus 78 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------~~~~ 146 (248)
T PRK10538 78 LVNNAGLALGLEPAHKASVEDWETMIDTNNKGLV-YMTRAVLPGMVERNHGHIINIGSTAGSWPYA----------GGNV 146 (248)
T ss_pred EEECCCccCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEECCcccCCCCC----------CCch
Confidence 9999997431 1233455678999999975 44 4444556777999999976653322 2668
Q ss_pred hHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHH
Q 022280 151 YGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 223 (300)
|+.+|.+.+.+.+.+.. ++.+++|+.+.|+......... ......... ....++.++|+|+
T Consensus 147 Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~~dvA~ 214 (248)
T PRK10538 147 YGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKG-DDGKAEKTY-----------QNTVALTPEDVSE 214 (248)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccC-cHHHHHhhc-----------cccCCCCHHHHHH
Confidence 99999999998877643 4577888888765321100000 000000000 0124578999999
Q ss_pred HHHHHHhcc
Q 022280 224 IILALTNRW 232 (300)
Q Consensus 224 ~~~~~~~~~ 232 (300)
++++++..+
T Consensus 215 ~~~~l~~~~ 223 (248)
T PRK10538 215 AVWWVATLP 223 (248)
T ss_pred HHHHHhcCC
Confidence 999999763
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=164.97 Aligned_cols=221 Identities=16% Similarity=0.127 Sum_probs=152.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC--chhhhh---hcCCCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP--LPQLLL---DALPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~--~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
.++++|||||+|+||+++++.|+++| ++|++..|+.+ ....+. ...+..+.++.+|++|.+++..+++
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G---~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREG---ADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC---CEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999999 88988876532 222222 2224456678999999987665544
Q ss_pred hcCCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
.++++|++||+||.... ..+.++++..+++|+.+++ .+++++... ..++||++||...+.+...
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~m~~~g~iv~iSS~~~~~~~~~-------- 195 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALF-WLTQEAIPLLPKGASIITTSSIQAYQPSPH-------- 195 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHhhhcCCEEEEECCchhccCCCC--------
Confidence 45789999999996421 1233456788999999996 887777642 2258999999988766543
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.+|.+++.+++.++ .++.+++|+.+.++..... ......... +.... ....+..+
T Consensus 196 --~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~---~~~~~~~~~-~~~~~-------~~~r~~~p 262 (294)
T PRK07985 196 --LLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG---GQTQDKIPQ-FGQQT-------PMKRAGQP 262 (294)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCcccccccc---CCCHHHHHH-HhccC-------CCCCCCCH
Confidence 5689999999998887653 3567899999988742110 001111111 11111 23356789
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+|.++++++...... ..+.++.+.+|.
T Consensus 263 edva~~~~fL~s~~~~~--itG~~i~vdgG~ 291 (294)
T PRK07985 263 AELAPVYVYLASQESSY--VTAEVHGVCGGE 291 (294)
T ss_pred HHHHHHHHhhhChhcCC--ccccEEeeCCCe
Confidence 99999999999763221 112378887764
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=163.83 Aligned_cols=230 Identities=16% Similarity=0.121 Sum_probs=153.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
|.++++|||||+|+||+++++.|+++| ++|+++.|+++.. .+.+. .+..+.++.+|+++++++..+++.
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G---~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEG---AIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcC---CcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999999 8899999886554 22222 245677899999999987666653
Q ss_pred cCCCCEEEEcccccCccc---cccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV---CENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++++|+|||+||...... ..+.++..+++|+.++. .+.+.+.+ .+.++||++||...+.+.. +
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~----------~ 149 (258)
T PRK08628 81 FGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYY-VMAHYCLPHLKASRGAIVNISSKTALTGQG----------G 149 (258)
T ss_pred cCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHH-HHHHHHHHHhhccCcEEEEECCHHhccCCC----------C
Confidence 468999999999643211 11345677899999986 77666543 2346899999977654432 2
Q ss_pred CChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCC-CchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 148 VNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPK-SLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+.+.+++.++ .++..++|+.++++........ .-......... .. .+. ...++.++
T Consensus 150 ~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~--~~~----~~~~~~~~ 222 (258)
T PRK08628 150 TSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAIT-AK--IPL----GHRMTTAE 222 (258)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHH-hc--CCc----cccCCCHH
Confidence 6789999999999998764 3567899999988742110000 00001111111 10 010 12478899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccCHHH
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e 255 (300)
|+++++++++...... ..+..+.++++ ...+++
T Consensus 223 dva~~~~~l~~~~~~~--~~g~~~~~~gg-~~~~~~ 255 (258)
T PRK08628 223 EIADTAVFLLSERSSH--TTGQWLFVDGG-YVHLDR 255 (258)
T ss_pred HHHHHHHHHhChhhcc--ccCceEEecCC-cccccc
Confidence 9999999999764211 11236777665 344333
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-21 Score=160.99 Aligned_cols=221 Identities=15% Similarity=0.134 Sum_probs=150.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~~ 77 (300)
.++++|||||+|+||+++++.|+++| ++|+++.|+.+......+.....+..+.+|+++++++..+++. ++++
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 90 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKG---ARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRI 90 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999 8999999985432222221133455789999999887666543 4689
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+|||+||...... ..+.++..+++|+.+++ ++++++.. .+.++||++||.....+... ..
T Consensus 91 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------~~ 159 (255)
T PRK06841 91 DILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSF-LMAQAVGRHMIAAGGGKIVNLASQAGVVALER----------HV 159 (255)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHH-HHHHHHHHHHHhcCCceEEEEcchhhccCCCC----------Cc
Confidence 99999999764322 12344568899999996 77777654 45679999999765433322 56
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.+|.+.+.+.+.++. ++..++|+.+..+....... .. ........ .....+.+++|++
T Consensus 160 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~----~~-~~~~~~~~-------~~~~~~~~~~~va 227 (255)
T PRK06841 160 AYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWA----GE-KGERAKKL-------IPAGRFAYPEEIA 227 (255)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccc----hh-HHHHHHhc-------CCCCCCcCHHHHH
Confidence 899999999988876644 45668888776553211100 00 11111111 1234678999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCc
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+++++++...... ..+.++.+.+|..
T Consensus 228 ~~~~~l~~~~~~~--~~G~~i~~dgg~~ 253 (255)
T PRK06841 228 AAALFLASDAAAM--ITGENLVIDGGYT 253 (255)
T ss_pred HHHHHHcCccccC--ccCCEEEECCCcc
Confidence 9999999764221 1233788877653
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=164.29 Aligned_cols=222 Identities=17% Similarity=0.147 Sum_probs=149.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|.++++|||||+|+||.++++.|+++| ++|++++|++++...+.+.+ +.++.++.+|+++.+++..+++ .
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G---~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAG---ADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999 89999999865544443322 4467778999999998765554 4
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh-----ccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE-----NKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+|||+||..... ...+.++..+++|+.++. ++++++.. .+.+++|++||.....+..
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-------- 155 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAH-ALTVAAVPLMLEHSGGGSVINISSTMGRLAGR-------- 155 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHH-HHHHHHHHHHHhhcCCeEEEEEccccccCCCC--------
Confidence 57899999999964332 123456788999999996 88888764 4557899999965543322
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
+...|+.+|.+++.+++.++. ++..++|+.+..+.... . .....+... +.+.. ....+..+
T Consensus 156 --~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~-~--~~~~~~~~~-~~~~~-------~~~~~~~~ 222 (263)
T PRK07814 156 --GFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEV-V--AANDELRAP-MEKAT-------PLRRLGDP 222 (263)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhh-c--cCCHHHHHH-HHhcC-------CCCCCcCH
Confidence 367899999999999887664 33456666654332100 0 000111111 11111 22345689
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|++++++++++.... ...+..+.+.++.
T Consensus 223 ~~va~~~~~l~~~~~~--~~~g~~~~~~~~~ 251 (263)
T PRK07814 223 EDIAAAAVYLASPAGS--YLTGKTLEVDGGL 251 (263)
T ss_pred HHHHHHHHHHcCcccc--CcCCCEEEECCCc
Confidence 9999999999976321 1123366776653
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=185.79 Aligned_cols=225 Identities=16% Similarity=0.223 Sum_probs=158.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCC--ceeEEEeecCCchhHHHHHHh----cC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH--SFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
.++++|||||+|+||+++++.|+++| ++|++++|+.+........+.. .+.++.+|++|.+++..+++. ++
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~G---a~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEG---ACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc---CEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999 8999999987665554443332 677789999999887666543 57
Q ss_pred CCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccC-CeEEEeeccccccCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKE-NLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~-~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++|+||||||...... +.+.++..+++|+.++. .+++++. +.+. ++||++||...+.+.+.
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~~--------- 567 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHF-LVAREAVRIMKAQGLGGSIVFIASKNAVNPGPN--------- 567 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCcEEEEECCccccCCCCC---------
Confidence 8999999999764322 23345678899999996 7755554 4444 69999999876654433
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeee-CCCCCCCCCCCchHHHHH-HHHhcCCce----eec--cCc
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIY-GPQTISPVPKSLPIQWID-SVLSKGEKV----EFF--HDE 211 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~-G~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~--~~~ 211 (300)
...|+.+|.+.+.+++.++. ++.+++|+.+| +.+..... +.. .....+... ..+ +..
T Consensus 568 -~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~ 639 (681)
T PRK08324 568 -FGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGE-------WIEARAAAYGLSEEELEEFYRARNL 639 (681)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccch-------hhhhhhhhccCChHHHHHHHHhcCC
Confidence 67899999999999987643 56789999998 54322111 110 000011110 011 234
Q ss_pred ccCceeHHHHHHHHHHHHhc--cccccccccceeeecCCCcc
Q 022280 212 CRCPVYVRDVVKIILALTNR--WLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~--~~~~~~~~~~i~ni~~~~~~ 251 (300)
.+++++++|+|+++++++.. ....|. +|++++|...
T Consensus 640 l~~~v~~~DvA~a~~~l~s~~~~~~tG~----~i~vdgG~~~ 677 (681)
T PRK08324 640 LKREVTPEDVAEAVVFLASGLLSKTTGA----IITVDGGNAA 677 (681)
T ss_pred cCCccCHHHHHHHHHHHhCccccCCcCC----EEEECCCchh
Confidence 67899999999999999852 222333 8999988643
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=163.40 Aligned_cols=223 Identities=17% Similarity=0.139 Sum_probs=149.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.++++|||||+|+||+++++.|+++| ++|++++|+.++.....+. .+..+.++.+|++|+++++.+++ .+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAG---ARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 8999999986554443322 23456778999999998855554 34
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc-----cCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN-----KENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~-----~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|+|||+||...... ..+.++..+++|+.+++ ++++++.+. +.++||++||...+.+.... .
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~------~ 160 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLF-LLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPE------V 160 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHH-HHHHHHHHHHHHhcCCeEEEEECChhhccCCCcc------c
Confidence 68999999999753221 22334567889999996 888876543 56799999997665443210 1
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
.+...|+.+|++++.+++.++. ++.+++|+.+-.+.. ..+...+... +..+.+ ...+..+
T Consensus 161 ~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~-----~~~~~~~~~~-~~~~~~-------~~~~~~~ 227 (259)
T PRK08213 161 MDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMT-----RGTLERLGED-LLAHTP-------LGRLGDD 227 (259)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcch-----hhhhHHHHHH-HHhcCC-------CCCCcCH
Confidence 2357899999999999987654 345566655543321 1122222222 212211 2235679
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+++.+.+++...... ..+.++++.++.
T Consensus 228 ~~va~~~~~l~~~~~~~--~~G~~~~~~~~~ 256 (259)
T PRK08213 228 EDLKGAALLLASDASKH--ITGQILAVDGGV 256 (259)
T ss_pred HHHHHHHHHHhCccccC--ccCCEEEECCCe
Confidence 99999999888653211 123377777653
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=165.74 Aligned_cols=210 Identities=13% Similarity=0.116 Sum_probs=145.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~~ 77 (300)
++++++||||||+||++++++|+++| ++|++++|+++.... ..++.++++|++|+++++.+++. ++++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g---~~V~~~~r~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~ 74 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAG---YRVFGTSRNPARAAP-----IPGVELLELDVTDDASVQAAVDEVIARAGRI 74 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCChhhccc-----cCCCeeEEeecCCHHHHHHHHHHHHHhCCCC
Confidence 35789999999999999999999999 899999998544321 23567789999999987776654 5789
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||...... ..+.++..+++|+.|+. .+++. +++.+.++||++||...+.+.+. ..
T Consensus 75 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----------~~ 143 (270)
T PRK06179 75 DVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGIL-RMTRAVLPHMRAQGSGRIINISSVLGFLPAPY----------MA 143 (270)
T ss_pred CEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCceEEEECCccccCCCCC----------cc
Confidence 99999999864322 22345678899999986 66665 45677889999999877655433 56
Q ss_pred hhHHHHHHHHHHHHHH-------cCCceeEeeeeeeCCCCCCCCCCC-chHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 150 VYGKSKVAAEKFIYEK-------CSNFAILRSSIIYGPQTISPVPKS-LPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~-------~~~~~ilR~~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
.|+.+|...+.+.+.+ +.++++++|+.+.++......... ....+-.... ...............++|+
T Consensus 144 ~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v 220 (270)
T PRK06179 144 LYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERA---VVSKAVAKAVKKADAPEVV 220 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHH---HHHHHHHhccccCCCHHHH
Confidence 8999999999887765 346789999998876432111110 0000000000 0000000112234678999
Q ss_pred HHHHHHHHhccc
Q 022280 222 VKIILALTNRWL 233 (300)
Q Consensus 222 a~~~~~~~~~~~ 233 (300)
++.++.++..+.
T Consensus 221 a~~~~~~~~~~~ 232 (270)
T PRK06179 221 ADTVVKAALGPW 232 (270)
T ss_pred HHHHHHHHcCCC
Confidence 999999998743
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=163.71 Aligned_cols=227 Identities=13% Similarity=0.095 Sum_probs=151.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
.+|+++||||+|+||+++++.|+++| ++|++++|+++....+.+.+ +..+.++++|++|.+++..+++
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G---~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREG---AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999 89999999876555444332 3456778999999988766655
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.++++|++||+||..... ...+.++..+++|+.+++ .+++++. +.+.++||++||...+.+...
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 154 (260)
T PRK07063 83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAW-NGCRAVLPGMVERGRGSIVNIASTHAFKIIPG------- 154 (260)
T ss_pred HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHhhCCeEEEEECChhhccCCCC-------
Confidence 457899999999975322 123356678899999986 6666654 345569999999876554433
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+++.+.+.++. ++..++|+.+-.+.........-............ .....+..
T Consensus 155 ---~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~-------~~~~r~~~ 224 (260)
T PRK07063 155 ---CFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLAL-------QPMKRIGR 224 (260)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhc-------CCCCCCCC
Confidence 56899999999999887653 34567777664332110000000000000111000 11234678
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
++|++.++++++...... ..+.++.+.+|...
T Consensus 225 ~~~va~~~~fl~s~~~~~--itG~~i~vdgg~~~ 256 (260)
T PRK07063 225 PEEVAMTAVFLASDEAPF--INATCITIDGGRSV 256 (260)
T ss_pred HHHHHHHHHHHcCccccc--cCCcEEEECCCeee
Confidence 999999999998763221 11237777776543
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=161.60 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=141.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|+||++|||||+|+||+++++.|+++ + +|+++.|+.+....+.+.. ..+.++++|++|.+++.++++.++++|+|
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~-~---~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~id~v 75 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT-H---TLLLGGRPAERLDELAAEL-PGATPFPVDLTDPEAIAAAVEQLGRLDVL 75 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh-C---CEEEEeCCHHHHHHHHHHh-ccceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence 56789999999999999999999988 4 5888999865544443332 34677899999999998888877689999
Q ss_pred EEcccccCccc----cccChhhhhhcccccch---HHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHH
Q 022280 81 VNCAALSVPRV----CENDPDSAMSINVPSSL---VNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGK 153 (300)
Q Consensus 81 ih~a~~~~~~~----~~~~~~~~~~~nv~~~~---~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~ 153 (300)
||++|...... ..+.+...++.|+.+.+ .++++.+++. .+++|++||...+++... ...|+.
T Consensus 76 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~~~~----------~~~y~~ 144 (227)
T PRK08219 76 VHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLRANPG----------WGSYAA 144 (227)
T ss_pred EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcCcCCC----------CchHHH
Confidence 99999754321 11234556888888864 1344444444 459999999887765433 678999
Q ss_pred HHHHHHHHHHHHcCCcee-EeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 154 SKVAAEKFIYEKCSNFAI-LRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 154 sK~~~e~~~~~~~~~~~i-lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
+|.+.+.+++.+..+... +|...++ |+.... + ........... ......+++++|++++++++++++
T Consensus 145 ~K~a~~~~~~~~~~~~~~~i~~~~i~-pg~~~~-~------~~~~~~~~~~~----~~~~~~~~~~~dva~~~~~~l~~~ 212 (227)
T PRK08219 145 SKFALRALADALREEEPGNVRVTSVH-PGRTDT-D------MQRGLVAQEGG----EYDPERYLRPETVAKAVRFAVDAP 212 (227)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEe-cCCccc-h------Hhhhhhhhhcc----ccCCCCCCCHHHHHHHHHHHHcCC
Confidence 999999988766432222 4544444 221100 0 01110100000 012356899999999999999875
Q ss_pred ccccccccceeeecC
Q 022280 233 LSEDKQMQLLLNVGG 247 (300)
Q Consensus 233 ~~~~~~~~~i~ni~~ 247 (300)
.. +. ++++.-
T Consensus 213 ~~-~~----~~~~~~ 222 (227)
T PRK08219 213 PD-AH----ITEVVV 222 (227)
T ss_pred CC-Cc----cceEEE
Confidence 42 22 666643
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=160.68 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=148.4
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC----CceeEEEeecCCchhHHHHHHhc--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP----HSFVFFDVDLKSGSGFDAVALKF-- 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~-- 74 (300)
|++++++|||||++||..+++.|+++| ++|+++.|+.+++.++.+++. ..+.++.+|++++++++.+...+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g---~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG---YNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 467899999999999999999999999 999999999998887776653 34677899999999887766532
Q ss_pred --CCCCEEEEcccccCccc----cccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 --GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 --~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
..+|++|||||+..... +++.-.+++++|+.+... .++..+.+.+.++||.++|...+-+.+.
T Consensus 81 ~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~-------- 152 (265)
T COG0300 81 RGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPY-------- 152 (265)
T ss_pred cCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcc--------
Confidence 37999999999876542 233345789999998752 3555566778889999999999888765
Q ss_pred CCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc-CcccCcee
Q 022280 146 APVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH-DECRCPVY 217 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 217 (300)
.+.|++||+.+-.+...+..| +..+-||.+.-.. .. . ....... ...+-++.
T Consensus 153 --~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f-------------~~-~----~~~~~~~~~~~~~~~~ 212 (265)
T COG0300 153 --MAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEF-------------FD-A----KGSDVYLLSPGELVLS 212 (265)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccc-------------cc-c----cccccccccchhhccC
Confidence 789999999998877766543 3444444443221 11 0 0000000 11234678
Q ss_pred HHHHHHHHHHHHhcc
Q 022280 218 VRDVVKIILALTNRW 232 (300)
Q Consensus 218 v~D~a~~~~~~~~~~ 232 (300)
++|+|+..+..+++.
T Consensus 213 ~~~va~~~~~~l~~~ 227 (265)
T COG0300 213 PEDVAEAALKALEKG 227 (265)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999984
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=162.72 Aligned_cols=219 Identities=15% Similarity=0.106 Sum_probs=150.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~~ 77 (300)
.+|++|||||+|+||+++++.|+++| ++|++++|+.+. ...+..+.++++|+++++++..+++. ++++
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g---~~v~~~~r~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 76 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAG---ATVVVCGRRAPE-----TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRL 76 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCChhh-----hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 899999998543 11234567789999999887666543 4789
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh-----ccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE-----NKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
|+||||||..... ...+.++..+++|+.+++ .+++.+.. .+.++||++||...+.+... .
T Consensus 77 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~----------~ 145 (252)
T PRK07856 77 DVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPL-LVAQAANAVMQQQPGGGSIVNIGSVSGRRPSPG----------T 145 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCcEEEEEcccccCCCCCC----------C
Confidence 9999999975432 122345678899999996 77777653 23468999999877655433 6
Q ss_pred ChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
..|+.+|.+.+.+++.++. ++..++|+.+..+........ . ..... +... .....+..++|++
T Consensus 146 ~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~--~-~~~~~-~~~~-------~~~~~~~~p~~va 214 (252)
T PRK07856 146 AAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGD--A-EGIAA-VAAT-------VPLGRLATPADIA 214 (252)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccC--H-HHHHH-Hhhc-------CCCCCCcCHHHHH
Confidence 7899999999999987654 334567777654421110000 0 00111 1111 1234567899999
Q ss_pred HHHHHHHhccccccccccceeeecCCCccC
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+++++++..... -..+..+.+.+|...+
T Consensus 215 ~~~~~L~~~~~~--~i~G~~i~vdgg~~~~ 242 (252)
T PRK07856 215 WACLFLASDLAS--YVSGANLEVHGGGERP 242 (252)
T ss_pred HHHHHHcCcccC--CccCCEEEECCCcchH
Confidence 999999875321 1223378888876544
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=161.26 Aligned_cols=161 Identities=18% Similarity=0.149 Sum_probs=127.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+++++||||+|+||+++++.|+++| + +|+++.|++++... .+..+.++++|++|.+++.++++.++.+|+||
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G---~~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi 78 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARG---AAKVYAAARDPESVTD----LGPRVVPLQLDVTDPASVAAAAEAASDVTILV 78 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---cccEEEEecChhhhhh----cCCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 4689999999999999999999999 7 89999998655433 34567788999999999999988877799999
Q ss_pred Ecccc-cCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCChhH
Q 022280 82 NCAAL-SVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYG 152 (300)
Q Consensus 82 h~a~~-~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~ 152 (300)
|+||. .... ...+.+...+++|+.+++ .+++++. +.+.+++|++||...+.+... ...|+
T Consensus 79 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~----------~~~y~ 147 (238)
T PRK08264 79 NNAGIFRTGSLLLEGDEDALRAEMETNYFGPL-AMARAFAPVLAANGGGAIVNVLSVLSWVNFPN----------LGTYS 147 (238)
T ss_pred ECCCcCCCCCccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCEEEEEcChhhccCCCC----------chHhH
Confidence 99997 3221 123345677899999996 7777754 345678999999887765433 67899
Q ss_pred HHHHHHHHHHHHHc-------CCceeEeeeeeeCCC
Q 022280 153 KSKVAAEKFIYEKC-------SNFAILRSSIIYGPQ 181 (300)
Q Consensus 153 ~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~ 181 (300)
.+|.+.+.+.+.+. .++.++||+.+.++.
T Consensus 148 ~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 148 ASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 99999998887653 356889999887653
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=163.78 Aligned_cols=228 Identities=11% Similarity=0.084 Sum_probs=151.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecCCchhHHHHHHh---c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLKSGSGFDAVALK---F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~---~ 74 (300)
+++++|||||+|+||++++++|+++| ++|++++|+.+....+.+.+ +..+.++++|++|+++++.+++. +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG---ADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999999 89999999866554443332 34577889999999987776653 4
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+++|++||+||..... .+.+.++..+++|+.+.+. .+++.+++.+.+++|++||...+.+.+.
T Consensus 84 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~~~---------- 153 (263)
T PRK08339 84 GEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPN---------- 153 (263)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCCCc----------
Confidence 6899999999975432 2334567889999988752 3444455566679999999876654433
Q ss_pred CChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCC------CCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 148 VNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPV------PKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.+|.+.+.+.+.++.+ +..+.|+.+-.+...... .......... .+.. . .+...
T Consensus 154 ~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-----~p~~r 225 (263)
T PRK08339 154 IALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQ-EYAK--P-----IPLGR 225 (263)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHH-HHhc--c-----CCccc
Confidence 567999999999988876543 455666666432100000 0000000000 0100 0 12345
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+..++|+++++.+++...... ..+.++.+.+|...|
T Consensus 226 ~~~p~dva~~v~fL~s~~~~~--itG~~~~vdgG~~~~ 261 (263)
T PRK08339 226 LGEPEEIGYLVAFLASDLGSY--INGAMIPVDGGRLNS 261 (263)
T ss_pred CcCHHHHHHHHHHHhcchhcC--ccCceEEECCCcccc
Confidence 788999999999998753211 113378887776554
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-21 Score=160.98 Aligned_cols=223 Identities=17% Similarity=0.163 Sum_probs=151.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|.+++||||||+|+||++++++|+++| ++|++.+|+.+....+... .+..+.++.+|+++.+++.++++ .
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G---~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 347899999999999999999999999 8999999886655443322 23456678999999998766554 3
Q ss_pred cCCCCEEEEcccccCccc---cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV---CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++++|+|||+||...... ..+.++..+++|+.+++ ++++.+. +.+.+++|++||.....+..
T Consensus 86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 154 (255)
T PRK06113 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFF-HLSQLVAPEMEKNGGGVILTITSMAAENKNI---------- 154 (255)
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHH-HHHHHHHHHHHhcCCcEEEEEecccccCCCC----------
Confidence 578999999999754322 22345567899999996 8887775 33446999999977543332
Q ss_pred CCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
+...|+.+|.+++.+++.++.+ +.++.|+.+.-+... ....+.+..... ... ....+..++
T Consensus 155 ~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~----~~~~~~~~~~~~-~~~-------~~~~~~~~~ 222 (255)
T PRK06113 155 NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALK----SVITPEIEQKML-QHT-------PIRRLGQPQ 222 (255)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccc----cccCHHHHHHHH-hcC-------CCCCCcCHH
Confidence 2568999999999999887543 344555554432211 111122222211 111 123467899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
|+++++++++..... -..+.++++.++...
T Consensus 223 d~a~~~~~l~~~~~~--~~~G~~i~~~gg~~~ 252 (255)
T PRK06113 223 DIANAALFLCSPAAS--WVSGQILTVSGGGVQ 252 (255)
T ss_pred HHHHHHHHHcCcccc--CccCCEEEECCCccc
Confidence 999999999965321 112348899887543
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=165.09 Aligned_cols=195 Identities=17% Similarity=0.118 Sum_probs=140.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~ 76 (300)
|+++++|||||||+||+++++.|+++| ++|+++.|+++....+...+. .+.++.+|++|++++..+++. +++
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALG---ARVAIGDLDEALAKETAAELG-LVVGGPLDVTDPASFAAFLDAVEADLGP 78 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhc-cceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999999999 899999998766555444432 466789999999987665543 468
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHH----hhhhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLS----SFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|++||+||...... ..+.....+++|+.+++ .+.+ .+.+.+.++||++||...+.+.+. .
T Consensus 79 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~ 147 (273)
T PRK07825 79 IDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVI-LGSKLAAPRMVPRGRGHVVNVASLAGKIPVPG----------M 147 (273)
T ss_pred CCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCEEEEEcCccccCCCCC----------C
Confidence 999999999764322 12234567899999886 5444 445567789999999877655433 6
Q ss_pred ChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.||.+.+.+.+.+. .++++++|+.+-.+... +. .+.....+++++|+
T Consensus 148 ~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~------------------~~----~~~~~~~~~~~~~v 205 (273)
T PRK07825 148 ATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA------------------GT----GGAKGFKNVEPEDV 205 (273)
T ss_pred cchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc------------------cc----ccccCCCCCCHHHH
Confidence 789999998887765543 35678888776432110 00 00111246889999
Q ss_pred HHHHHHHHhcc
Q 022280 222 VKIILALTNRW 232 (300)
Q Consensus 222 a~~~~~~~~~~ 232 (300)
|+.++.+++++
T Consensus 206 a~~~~~~l~~~ 216 (273)
T PRK07825 206 AAAIVGTVAKP 216 (273)
T ss_pred HHHHHHHHhCC
Confidence 99999999874
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-21 Score=160.10 Aligned_cols=218 Identities=18% Similarity=0.239 Sum_probs=146.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCC-
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQ- 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~- 76 (300)
+++++||||+|+||+++++.|+++| ++|++..++ .+....+....+..+.++++|++|++++..+++. +++
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G---~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 81 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREG---ARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKP 81 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC---CeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 4799999999999999999999999 888876554 3334444444445677789999999887766653 345
Q ss_pred CCEEEEcccccCc----------cccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCC
Q 022280 77 PDVVVNCAALSVP----------RVCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 77 ~d~vih~a~~~~~----------~~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
+|++||+|+.... ..+.+.+...+++|+.+++ .+++++. +.+.+++|++||.....+.
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~g~iv~iss~~~~~~~------- 153 (253)
T PRK08642 82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGAL-NTIQAALPGMREQGFGRIINIGTNLFQNPV------- 153 (253)
T ss_pred CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHH-HHHHHHHHHHHhcCCeEEEEECCccccCCC-------
Confidence 9999999986311 1122344577999999996 8777765 3455799999986543222
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
.|...|+.||.+.+.+++.++. ++..++|+.+..+.... .....+. ..+.... ....+
T Consensus 154 ---~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~----~~~~~~~-~~~~~~~-------~~~~~ 218 (253)
T PRK08642 154 ---VPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASA----ATPDEVF-DLIAATT-------PLRKV 218 (253)
T ss_pred ---CCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhc----cCCHHHH-HHHHhcC-------CcCCC
Confidence 2467899999999999988754 34557777765432111 1111111 1111111 12358
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
.+++|+++++.+++...... -.+.++.+.+|
T Consensus 219 ~~~~~va~~~~~l~~~~~~~--~~G~~~~vdgg 249 (253)
T PRK08642 219 TTPQEFADAVLFFASPWARA--VTGQNLVVDGG 249 (253)
T ss_pred CCHHHHHHHHHHHcCchhcC--ccCCEEEeCCC
Confidence 89999999999999753211 11337777765
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-21 Score=160.49 Aligned_cols=219 Identities=16% Similarity=0.133 Sum_probs=146.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-Cchhhhhh---cCCCceeEEEeecCCchhHHHHHH----hc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++++|||||+|+||++++++|+++| ++|++..++. +....+.. ..+..+.++.+|++|.+++..+++ ++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G---~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERG---YAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDREL 78 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999 7887776543 22222222 223456678999999988766654 45
Q ss_pred CCCCEEEEcccccCccc-----cccChhhhhhcccccchHHHHHhhhhc------c-CCeEEEeeccccccCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV-----CENDPDSAMSINVPSSLVNWLSSFTEN------K-ENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~~l~~~~~~~------~-~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
+++|+|||+||...... ..+.++..+++|+.+++ ++++++.+. + .+++|++||...+.+...
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~----- 152 (248)
T PRK06123 79 GRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSF-LCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPG----- 152 (248)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCC-----
Confidence 68999999999754321 22345578999999996 777666542 1 237999999765333211
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
....|+.+|.+.+.+++.++ .++.++||+.++++...... ...+... .....+ ...+
T Consensus 153 ----~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~----~~~~~~~-~~~~~p-------~~~~ 216 (248)
T PRK06123 153 ----EYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG----EPGRVDR-VKAGIP-------MGRG 216 (248)
T ss_pred ----CccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC----CHHHHHH-HHhcCC-------CCCC
Confidence 12469999999999887653 46788999999988532111 1122221 111111 2234
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
.+++|+++++++++...... ..+.+|+++++
T Consensus 217 ~~~~d~a~~~~~l~~~~~~~--~~g~~~~~~gg 247 (248)
T PRK06123 217 GTAEEVARAILWLLSDEASY--TTGTFIDVSGG 247 (248)
T ss_pred cCHHHHHHHHHHHhCccccC--ccCCEEeecCC
Confidence 57999999999998763211 12338998775
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=159.44 Aligned_cols=223 Identities=14% Similarity=0.163 Sum_probs=146.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch-hhhhhcCCCceeEEEeecCCchhHHHHHHh----cCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-QLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~ 76 (300)
.+|+++||||+|+||+++++.|+++| ++|++..++.+.. ..+.. ..+.++.+|++|+++++.+++. +++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~~~~~l~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREG---AKVAVLYNSAENEAKELRE---KGVFTIKCDVGNRDQVKKSKEVVEKEFGR 79 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCcHHHHHHHHh---CCCeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 35899999999999999999999999 8888877664332 22221 2466789999999987766553 578
Q ss_pred CCEEEEcccccCcc----ccccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 77 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
+|+||||||..... .+.+.++..+++|+.+++. .+++.+++.+.+++|++||...++... ....
T Consensus 80 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~---------~~~~ 150 (255)
T PRK06463 80 VDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAA---------EGTT 150 (255)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCC---------CCcc
Confidence 99999999975321 1233456788999999741 344555545567999999988775321 1256
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.||.+.+.+++.++. ++..++|+.+--+-.....+...... ........ ...+.+..++|++
T Consensus 151 ~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~va 222 (255)
T PRK06463 151 FYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEK-LRELFRNK-------TVLKTTGKPEDIA 222 (255)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHH-HHHHHHhC-------CCcCCCcCHHHHH
Confidence 799999999999887753 45667777664332110000000001 11111111 1234567899999
Q ss_pred HHHHHHHhccccccccccceeeecCCC
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++++++...... ..+.++.+.+|.
T Consensus 223 ~~~~~l~s~~~~~--~~G~~~~~dgg~ 247 (255)
T PRK06463 223 NIVLFLASDDARY--ITGQVIVADGGR 247 (255)
T ss_pred HHHHHHcChhhcC--CCCCEEEECCCe
Confidence 9999999764321 112378887765
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-21 Score=161.27 Aligned_cols=220 Identities=16% Similarity=0.168 Sum_probs=146.4
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|++|++|||||+|+||+++++.|+++| ++|++++|+.+.. ..+.++++|++|+++++++++ ++++
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G---~~Vi~~~r~~~~~--------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEG---SNVINFDIKEPSY--------NDVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCCcccc--------CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 356899999999999999999999999 8999999875432 246678999999988766654 3578
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+|||+||...... ..+.++..+++|+.+++ .+++++. +.+.+++|++||...+.+.+. .
T Consensus 73 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~ 141 (258)
T PRK06398 73 IDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIF-LMSKYTIPYMLKQDKGVIINIASVQSFAVTRN----------A 141 (258)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCeEEEEeCcchhccCCCC----------C
Confidence 999999999754322 22345677899999996 7666654 345679999999887765433 6
Q ss_pred ChhHHHHHHHHHHHHHHcCC------ceeEeeeeeeCCCCCCCC--C-CCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 149 NVYGKSKVAAEKFIYEKCSN------FAILRSSIIYGPQTISPV--P-KSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~------~~ilR~~~v~G~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
..|+.+|.+.+.+.+.++.+ +..++|+.+-.+-..... . ...+ .........-. .......+..++
T Consensus 142 ~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~p~ 216 (258)
T PRK06398 142 AAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDP-EHVERKIREWG----EMHPMKRVGKPE 216 (258)
T ss_pred chhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCCh-hhhHHHHHhhh----hcCCcCCCcCHH
Confidence 78999999999999877653 345666655433110000 0 0000 00000000000 001234577899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|+++++++++...... ..+.++.+.+|.
T Consensus 217 eva~~~~~l~s~~~~~--~~G~~i~~dgg~ 244 (258)
T PRK06398 217 EVAYVVAFLASDLASF--ITGECVTVDGGL 244 (258)
T ss_pred HHHHHHHHHcCcccCC--CCCcEEEECCcc
Confidence 9999999998753211 113377777764
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-21 Score=159.71 Aligned_cols=221 Identities=18% Similarity=0.220 Sum_probs=148.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhcCCCceeEEEeecCCchhHHHHHHh----cC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
|.+|++|||||+|+||++++++|+++| ++|++.+|+... .....+..+.++.++.+|+++.+++.+++++ ++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G---~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAG---ADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999999 899988876421 2222233355677889999999987776654 57
Q ss_pred CCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hcc-CCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENK-ENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 76 ~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++|++|||||..... .+.+.++..+++|+.+++ .+.+++. +.+ .++||++||...+.+...
T Consensus 83 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~-~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~--------- 152 (251)
T PRK12481 83 HIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVF-FLSQAVAKQFVKQGNGGKIINIASMLSFQGGIR--------- 152 (251)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHH-HHHHHHHHHHHHcCCCCEEEEeCChhhcCCCCC---------
Confidence 899999999976432 133456788999999986 6665543 333 369999999887765433
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+.+.+.+.++. ++..++|+.+-.+.... ... ......... .. . ....+..++
T Consensus 153 -~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~-~~~--~~~~~~~~~-~~--~-----p~~~~~~pe 220 (251)
T PRK12481 153 -VPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAA-LRA--DTARNEAIL-ER--I-----PASRWGTPD 220 (251)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhh-ccc--ChHHHHHHH-hc--C-----CCCCCcCHH
Confidence 56899999999998876543 45667787775432110 000 001111111 11 1 123567899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
|+++++.+++...... ..+.++.+.+|
T Consensus 221 eva~~~~~L~s~~~~~--~~G~~i~vdgg 247 (251)
T PRK12481 221 DLAGPAIFLSSSASDY--VTGYTLAVDGG 247 (251)
T ss_pred HHHHHHHHHhCccccC--cCCceEEECCC
Confidence 9999999999653211 11236666665
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-21 Score=161.60 Aligned_cols=221 Identities=11% Similarity=0.030 Sum_probs=153.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.+|+++||||+|+||+++++.|+++| ++|++++|+++....+... .+..+.++.+|+++++++..+++ .+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAG---AHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999 8999999986554443332 24457789999999988766554 35
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+|||+||...... ..+.++..+++|+.+++ .+.+.+. +.+.+++|++||...+.+...
T Consensus 87 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~--------- 156 (256)
T PRK06124 87 GRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPI-LLSRLAAQRMKRQGYGRIIAITSIAGQVARAG--------- 156 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEEeechhccCCCC---------
Confidence 68999999999754321 22345677899999996 7775554 356779999999776544433
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.+|.+.+.+++.++ .++..++|+.+.++....... ...+. ..+... .....+++++
T Consensus 157 -~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~---~~~~~-~~~~~~-------~~~~~~~~~~ 224 (256)
T PRK06124 157 -DAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAA---DPAVG-PWLAQR-------TPLGRWGRPE 224 (256)
T ss_pred -ccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhcc---ChHHH-HHHHhc-------CCCCCCCCHH
Confidence 5789999999999887654 356778999888764211100 11111 111111 1123578999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|+++++++++...... ..+..+.+.+|.
T Consensus 225 ~~a~~~~~l~~~~~~~--~~G~~i~~dgg~ 252 (256)
T PRK06124 225 EIAGAAVFLASPAASY--VNGHVLAVDGGY 252 (256)
T ss_pred HHHHHHHHHcCcccCC--cCCCEEEECCCc
Confidence 9999999999875321 112266666654
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-21 Score=162.49 Aligned_cols=226 Identities=15% Similarity=0.101 Sum_probs=147.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|.+|++|||||+|+||+++++.|+++| ++|++++|+ +........+ +..+..+.+|+++.+++..+++ .
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G---~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEG---AYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999 899999998 5444433322 3457788999999988766554 4
Q ss_pred cCCCCEEEEcccccCc-cc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP-RV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|++|||||.... .. ..+.++..+++|+.+++ .+++. +++.+ +++|++||...+.+...
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~------- 150 (272)
T PRK08589 80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTF-LMTKMLLPLMMEQG-GSIINTSSFSGQAADLY------- 150 (272)
T ss_pred cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcC-CEEEEeCchhhcCCCCC-------
Confidence 5789999999997532 11 12234677889999885 55444 33344 69999999877655433
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+++.+++.++. ++..+.|+.|..+..... ....... ....+..... .......+..
T Consensus 151 ---~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~ 222 (272)
T PRK08589 151 ---RSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKL-TGTSEDE-AGKTFRENQK---WMTPLGRLGK 222 (272)
T ss_pred ---CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhh-cccchhh-HHHHHhhhhh---ccCCCCCCcC
Confidence 56899999999999987754 456677777754421100 0000000 0000000000 0012334678
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++|+++++++++...... ..+.++.+.++.
T Consensus 223 ~~~va~~~~~l~s~~~~~--~~G~~i~vdgg~ 252 (272)
T PRK08589 223 PEEVAKLVVFLASDDSSF--ITGETIRIDGGV 252 (272)
T ss_pred HHHHHHHHHHHcCchhcC--cCCCEEEECCCc
Confidence 999999999998753211 112367776654
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-21 Score=159.86 Aligned_cols=198 Identities=18% Similarity=0.194 Sum_probs=143.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
+|+++|||||+|+||+.++++|+++| ++|++++|+++....+.+. .+..+.++.+|+++.+++..+++ .+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG---WDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 36789999999999999999999999 8999999986554444332 23467778999999987666554 45
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+|||+||...... ..+.++..+++|+.+++ ++++.+ .+.+.+++|++||...+++...
T Consensus 82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 151 (241)
T PRK07454 82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVF-QCCSAVLPGMRARGGGLIINVSSIAARNAFPQ--------- 151 (241)
T ss_pred CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHH-HHHHHHHHHHHhcCCcEEEEEccHHhCcCCCC---------
Confidence 68999999999754321 22345677899999986 655554 4455679999999988766543
Q ss_pred CCChhHHHHHHHHHHHHHH-------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEK-------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~-------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.+|.+.+.+.+.+ +.++.++||+.+-.+...... ... . .....++.++
T Consensus 152 -~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~--------~~~------~-----~~~~~~~~~~ 211 (241)
T PRK07454 152 -WGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTET--------VQA------D-----FDRSAMLSPE 211 (241)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccccc--------ccc------c-----cccccCCCHH
Confidence 678999999999887654 346788999988655311000 000 0 0012357899
Q ss_pred HHHHHHHHHHhcc
Q 022280 220 DVVKIILALTNRW 232 (300)
Q Consensus 220 D~a~~~~~~~~~~ 232 (300)
|+|+++++++..+
T Consensus 212 ~va~~~~~l~~~~ 224 (241)
T PRK07454 212 QVAQTILHLAQLP 224 (241)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999875
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-21 Score=160.89 Aligned_cols=221 Identities=14% Similarity=0.075 Sum_probs=148.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++++++||||+|+||.++++.|+++| ++|++++|++++.+.+.+.+ +..+.++.+|++++++++.+++ ++
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREG---AKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 34799999999999999999999999 89999999876655544332 3456778999999987666554 45
Q ss_pred CCCCEEEEcccccCc-----cccccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccC-CCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEG-VKSFYKEEDE 144 (300)
Q Consensus 75 ~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~-~~~~~~E~~~ 144 (300)
+++|+|||+||.... ....+.++..+++|+.+++ .+ ++.+++.+.+++|++||...+.. .+
T Consensus 82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~~~-------- 152 (254)
T PRK07478 82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAF-LGAKHQIPAMLARGGGSLIFTSTFVGHTAGFP-------- 152 (254)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCceEEEEechHhhccCCC--------
Confidence 789999999997532 1122345678999999885 54 44445556679999999776532 22
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
+...|+.||.+++.+++.++. ++..++|+.+-.+.... .. ..+ .. ...+.... ....+..
T Consensus 153 --~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-~~-~~~-~~-~~~~~~~~-------~~~~~~~ 219 (254)
T PRK07478 153 --GMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRA-MG-DTP-EA-LAFVAGLH-------ALKRMAQ 219 (254)
T ss_pred --CcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCccccc-cc-CCH-HH-HHHHHhcC-------CCCCCcC
Confidence 257899999999998887644 44667888775442110 00 001 11 11111111 1234678
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++|+++.+++++...... ..+.++.+.++.
T Consensus 220 ~~~va~~~~~l~s~~~~~--~~G~~~~~dgg~ 249 (254)
T PRK07478 220 PEEIAQAALFLASDAASF--VTGTALLVDGGV 249 (254)
T ss_pred HHHHHHHHHHHcCchhcC--CCCCeEEeCCch
Confidence 999999999999753221 113367776654
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=159.82 Aligned_cols=220 Identities=20% Similarity=0.181 Sum_probs=150.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh---hcCCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL---DALPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.++++|||||+|+||.++++.|+++| ++|++..|+ +..+.+. ...+..+.++++|+++.+++..+++ .+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G---~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAG---ADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999 899999887 3333322 2234567789999999987666554 45
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|++||+||...... ..+.++..+++|+.+++ .+.+++ ++.+.+++|++||...+.+...
T Consensus 90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 159 (258)
T PRK06935 90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVY-HLSQAVAKVMAKQGSGKIINIASMLSFQGGKF--------- 159 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHH-HHHHHHHHHHHhcCCeEEEEECCHHhccCCCC---------
Confidence 68999999999754321 22345678899999985 555444 3455679999999887755433
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.+|.+.+.+++.++. ++.+++|+.+..+........ ........ .. .+...+..++
T Consensus 160 -~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~---~~~~~~~~-~~-------~~~~~~~~~~ 227 (258)
T PRK06935 160 -VPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRAD---KNRNDEIL-KR-------IPAGRWGEPD 227 (258)
T ss_pred -chhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccC---hHHHHHHH-hc-------CCCCCCCCHH
Confidence 56899999999998887654 456788888765532110000 01111111 11 1234578899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|++..+.+++...... -.+.++.+.+|.
T Consensus 228 dva~~~~~l~s~~~~~--~~G~~i~~dgg~ 255 (258)
T PRK06935 228 DLMGAAVFLASRASDY--VNGHILAVDGGW 255 (258)
T ss_pred HHHHHHHHHcChhhcC--CCCCEEEECCCe
Confidence 9999999998753211 113377777764
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=159.09 Aligned_cols=221 Identities=16% Similarity=0.152 Sum_probs=151.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.++++|||||+|+||++++++|+++| ++|++.+|+++....+.+++ +..+.++.+|++|.+++..+++ .+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G---~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYG---AEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999 89999999866555444332 3356678899999998776654 35
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+|||+||..... ...+.++..+++|+.+++ .+++++.. .+.++||++||.....+.+
T Consensus 85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 153 (254)
T PRK08085 85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVF-LVSQAVARYMVKRQAGKIINICSMQSELGRD---------- 153 (254)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEEccchhccCCC----------
Confidence 6899999999975322 123345678999999986 66666543 4557999999976543322
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
+...|+.+|.+.+.+++.++. ++..++|+.+..+...... . ...+. ...... .+...+..++
T Consensus 154 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~-~--~~~~~-~~~~~~-------~p~~~~~~~~ 222 (254)
T PRK08085 154 TITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALV-E--DEAFT-AWLCKR-------TPAARWGDPQ 222 (254)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhc-c--CHHHH-HHHHhc-------CCCCCCcCHH
Confidence 256899999999999987643 5677899888766421100 0 01111 111111 1234578899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|++.++.+++...... -.+.++.+.+|.
T Consensus 223 ~va~~~~~l~~~~~~~--i~G~~i~~dgg~ 250 (254)
T PRK08085 223 ELIGAAVFLSSKASDF--VNGHLLFVDGGM 250 (254)
T ss_pred HHHHHHHHHhCccccC--CcCCEEEECCCe
Confidence 9999999999753211 112366666653
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=166.68 Aligned_cols=243 Identities=23% Similarity=0.279 Sum_probs=166.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh---hh--------hhcC----C---CceeEEEeecCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ---LL--------LDAL----P---HSFVFFDVDLKS 63 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~---~~--------~~~~----~---~~~~~~~~D~~~ 63 (300)
.+|+|||||||||+|.-++++|+....++-+++++.|.+...+ .+ ++.+ + .++..+.||+++
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~~ 90 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDISE 90 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccccC
Confidence 4689999999999999999999998866678888888754321 11 1111 1 345568899887
Q ss_pred ch------hHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhh-ccCCeEEEeeccccccCCC
Q 022280 64 GS------GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE-NKENLLIHLSTDQVYEGVK 136 (300)
Q Consensus 64 ~~------~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~-~~~~~~v~~SS~~~~~~~~ 136 (300)
++ +++.+.+ .+|+|||+|+...++ +..+....+|+.|+. ++++.|++ .+.+-++|+||+.+. ...
T Consensus 91 ~~LGis~~D~~~l~~---eV~ivih~AAtvrFd---e~l~~al~iNt~Gt~-~~l~lak~~~~l~~~vhVSTAy~n-~~~ 162 (467)
T KOG1221|consen 91 PDLGISESDLRTLAD---EVNIVIHSAATVRFD---EPLDVALGINTRGTR-NVLQLAKEMVKLKALVHVSTAYSN-CNV 162 (467)
T ss_pred cccCCChHHHHHHHh---cCCEEEEeeeeeccc---hhhhhhhhhhhHhHH-HHHHHHHHhhhhheEEEeehhhee-ccc
Confidence 66 2333333 899999999987664 245677899999996 99999988 567899999998776 221
Q ss_pred CCCCCC-----C-----------------------C---CCCCChhHHHHHHHHHHHHHHcC--CceeEeeeeeeCCCCC
Q 022280 137 SFYKEE-----D-----------------------E---IAPVNVYGKSKVAAEKFIYEKCS--NFAILRSSIIYGPQTI 183 (300)
Q Consensus 137 ~~~~E~-----~-----------------------~---~~p~~~Y~~sK~~~e~~~~~~~~--~~~ilR~~~v~G~~~~ 183 (300)
..+.|. . + ....+.|.-+|+.+|.++.+... +.+|+||++|.....
T Consensus 163 ~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~~lPivIiRPsiI~st~~- 241 (467)
T KOG1221|consen 163 GHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAENLPLVIIRPSIITSTYK- 241 (467)
T ss_pred ccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhccCCCeEEEcCCceecccc-
Confidence 111111 0 0 01256799999999999998876 789999999987542
Q ss_pred CCCCCCchHHHHHHHHh---------cCCceeecc--CcccCceeHHHHHHHHHHHHhccccccc-cccceeeecCCC--
Q 022280 184 SPVPKSLPIQWIDSVLS---------KGEKVEFFH--DECRCPVYVRDVVKIILALTNRWLSEDK-QMQLLLNVGGPD-- 249 (300)
Q Consensus 184 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~i~ni~~~~-- 249 (300)
.+.| +|+...-. +|..-.+.. +...|++++|.++.+++.+.-.-..... ....+||++++.
T Consensus 242 EP~p-----GWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~N 316 (467)
T KOG1221|consen 242 EPFP-----GWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDN 316 (467)
T ss_pred CCCC-----CccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccC
Confidence 1122 23332110 111112222 3467899999999999877643222211 124599998866
Q ss_pred ccCHHHHHH
Q 022280 250 RVSRVQMAE 258 (300)
Q Consensus 250 ~~s~~e~~~ 258 (300)
++++.++.+
T Consensus 317 p~t~~~~~e 325 (467)
T KOG1221|consen 317 PVTWGDFIE 325 (467)
T ss_pred cccHHHHHH
Confidence 789999888
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=161.71 Aligned_cols=221 Identities=16% Similarity=0.208 Sum_probs=150.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.+++++||||+|+||+++++.|+++| ++|++++|+.+....+.+.+ +.++.++++|++|.+++..+++ .+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAG---AKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999 89999999865554444332 3456778999999987766554 35
Q ss_pred CCCCEEEEcccccCccc-------------------cccChhhhhhcccccchHHHH----HhhhhccCCeEEEeecccc
Q 022280 75 GQPDVVVNCAALSVPRV-------------------CENDPDSAMSINVPSSLVNWL----SSFTENKENLLIHLSTDQV 131 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~-------------------~~~~~~~~~~~nv~~~~~~l~----~~~~~~~~~~~v~~SS~~~ 131 (300)
+++|+|||+||...... ..+.++..+++|+.+++ .++ +.+.+.+.++||++||...
T Consensus 86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~g~ii~isS~~~ 164 (278)
T PRK08277 86 GPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTL-LPTQVFAKDMVGRKGGNIINISSMNA 164 (278)
T ss_pred CCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCcEEEEEccchh
Confidence 78999999999643211 12345677899999885 444 4444455679999999988
Q ss_pred ccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCC--CCCchHHHHHHHHhcC
Q 022280 132 YEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPV--PKSLPIQWIDSVLSKG 202 (300)
Q Consensus 132 ~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~ 202 (300)
+.+... ...|+.||.+++.+++.++. ++..++|+.+..+...... ............. .
T Consensus 165 ~~~~~~----------~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-~- 232 (278)
T PRK08277 165 FTPLTK----------VPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKIL-A- 232 (278)
T ss_pred cCCCCC----------CchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHHh-c-
Confidence 766443 66899999999998887644 4567888888766321100 0000000111110 1
Q ss_pred CceeeccCcccCceeHHHHHHHHHHHHhc-cc--cccccccceeeecCC
Q 022280 203 EKVEFFHDECRCPVYVRDVVKIILALTNR-WL--SEDKQMQLLLNVGGP 248 (300)
Q Consensus 203 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~-~~--~~~~~~~~i~ni~~~ 248 (300)
......+..++|+|+++++++.. .. ..|+ ++.+.+|
T Consensus 233 ------~~p~~r~~~~~dva~~~~~l~s~~~~~~~tG~----~i~vdgG 271 (278)
T PRK08277 233 ------HTPMGRFGKPEELLGTLLWLADEKASSFVTGV----VLPVDGG 271 (278)
T ss_pred ------cCCccCCCCHHHHHHHHHHHcCccccCCcCCC----EEEECCC
Confidence 11234678899999999998875 22 2233 7777766
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=159.42 Aligned_cols=196 Identities=15% Similarity=0.138 Sum_probs=142.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHH----hcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL----KFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~----~~~ 75 (300)
+++++||||+|+||.+++++|+++| ++|++++|+++....+.+ ..+..+.++.+|+++++++..+++ +++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G---~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEG---VNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999 899999998654433322 224467778999999998766665 346
Q ss_pred CCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|+|||+||...... ..+.+++.+++|+.+++ ++.+.+. +.+.+++|++||...+.+...
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~---------- 152 (239)
T PRK07666 84 SIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVY-YATRAVLPSMIERQSGDIINISSTAGQKGAAV---------- 152 (239)
T ss_pred CccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCcEEEEEcchhhccCCCC----------
Confidence 8999999999754321 22334677899999986 7776665 355678999999776655433
Q ss_pred CChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.+|.+.+.+++.+. .++.++||+.+..+.... . .. .......++.++|
T Consensus 153 ~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~----------~--~~--------~~~~~~~~~~~~~ 212 (239)
T PRK07666 153 TSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVD----------L--GL--------TDGNPDKVMQPED 212 (239)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhh----------c--cc--------cccCCCCCCCHHH
Confidence 5679999999988876553 357889998887653110 0 00 0011224678999
Q ss_pred HHHHHHHHHhcc
Q 022280 221 VVKIILALTNRW 232 (300)
Q Consensus 221 ~a~~~~~~~~~~ 232 (300)
+|+.++.+++.+
T Consensus 213 ~a~~~~~~l~~~ 224 (239)
T PRK07666 213 LAEFIVAQLKLN 224 (239)
T ss_pred HHHHHHHHHhCC
Confidence 999999999874
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=159.01 Aligned_cols=224 Identities=17% Similarity=0.201 Sum_probs=143.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC----chhhhhhc---CCCceeEEEeecCCchhHHHHHHh-
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP----LPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~----~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~- 73 (300)
+++++|||||+|+||.++++.|+++| ++|++..++.+ ....+.+. .+..+.++++|++++++++++++.
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G---~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQG---AKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC---CcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHH
Confidence 35799999999999999999999999 78666655422 12222221 234677789999999987766653
Q ss_pred ---cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 ---FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ---~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|++||+||..... ...+.++..+++|+.+++ .+++++... ..+++++++|.....+.+.
T Consensus 84 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~~~~~~~~~~~iv~~~ss~~~~~~~~------- 155 (257)
T PRK12744 84 KAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAF-FFIKEAGRHLNDNGKIVTLVTSLLGAFTPF------- 155 (257)
T ss_pred HHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHH-HHHHHHHHhhccCCCEEEEecchhcccCCC-------
Confidence 56899999999974322 223346678999999996 777777642 2246777643322222211
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+.|.+++.++. ++.+++|+.+..+...... .+ .... . ............+.+.+
T Consensus 156 ---~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~---~~-~~~~-~--~~~~~~~~~~~~~~~~~ 225 (257)
T PRK12744 156 ---YSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQE---GA-EAVA-Y--HKTAAALSPFSKTGLTD 225 (257)
T ss_pred ---cccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhcccc---cc-chhh-c--ccccccccccccCCCCC
Confidence 56899999999999987754 4567888887655321100 00 0000 0 00000000011235889
Q ss_pred HHHHHHHHHHHHhcc-ccccccccceeeecCCCc
Q 022280 218 VRDVVKIILALTNRW-LSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 218 v~D~a~~~~~~~~~~-~~~~~~~~~i~ni~~~~~ 250 (300)
++|++.++.++++.. ...|+ ++++.+|..
T Consensus 226 ~~dva~~~~~l~~~~~~~~g~----~~~~~gg~~ 255 (257)
T PRK12744 226 IEDIVPFIRFLVTDGWWITGQ----TILINGGYT 255 (257)
T ss_pred HHHHHHHHHHhhcccceeecc----eEeecCCcc
Confidence 999999999999852 11233 888888743
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=158.78 Aligned_cols=222 Identities=15% Similarity=0.123 Sum_probs=146.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecC-CCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH-HSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK--- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~-r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~--- 73 (300)
|++|+++||||+|+||++++++|+++| ++|++.. ++.+........ .+..+..+.+|+++.+++...++.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDG---ALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDN 78 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999 8888765 443333332222 133456688999998876554432
Q ss_pred -----cC--CCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCC
Q 022280 74 -----FG--QPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 74 -----~~--~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
++ ++|+||||||...... ..+.++..+++|+.+++ .+++++... +.++||++||...+.+.+.
T Consensus 79 ~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~-~l~~~~~~~~~~~g~iv~isS~~~~~~~~~--- 154 (252)
T PRK12747 79 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPF-FIIQQALSRLRDNSRIINISSAATRISLPD--- 154 (252)
T ss_pred HhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHH-HHHHHHHHHhhcCCeEEEECCcccccCCCC---
Confidence 22 7999999999753321 22235677889999996 777666542 2359999999887655433
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||++++.+++.++. ++..+.|+.+.++......+. ......... ..+.+
T Consensus 155 -------~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~----~~~~~~~~~-------~~~~~ 216 (252)
T PRK12747 155 -------FIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSD----PMMKQYATT-------ISAFN 216 (252)
T ss_pred -------chhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccC----HHHHHHHHh-------cCccc
Confidence 57899999999998876643 456788888876532110000 001111100 01234
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+.+++|+++++.+++...... ..+.++.+.+|.
T Consensus 217 ~~~~~~dva~~~~~l~s~~~~~--~~G~~i~vdgg~ 250 (252)
T PRK12747 217 RLGEVEDIADTAAFLASPDSRW--VTGQLIDVSGGS 250 (252)
T ss_pred CCCCHHHHHHHHHHHcCccccC--cCCcEEEecCCc
Confidence 5789999999999998653211 112377777653
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=157.21 Aligned_cols=216 Identities=16% Similarity=0.136 Sum_probs=145.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
++++||||||+|+||+++++.|+++| ++|+++.++ .+..+.+.... ...++.+|++|.+++.+.++.++++|++
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G---~~v~~~~~~~~~~~~~l~~~~--~~~~~~~D~~~~~~~~~~~~~~~~id~l 79 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDG---ANVRFTYAGSKDAAERLAQET--GATAVQTDSADRDAVIDVVRKSGALDIL 79 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEecCCCHHHHHHHHHHh--CCeEEecCCCCHHHHHHHHHHhCCCcEE
Confidence 46899999999999999999999999 888887664 33333333332 2456789999998888888777789999
Q ss_pred EEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHH
Q 022280 81 VNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKS 154 (300)
Q Consensus 81 ih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~s 154 (300)
||+||..... .+.+.++..+++|+.+++ .++..+... +.+++|++||...... +..+...|+.+
T Consensus 80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~g~iv~isS~~~~~~---------~~~~~~~Y~~s 149 (237)
T PRK12742 80 VVNAGIAVFGDALELDADDIDRLFKINIHAPY-HASVEAARQMPEGGRIIIIGSVNGDRM---------PVAGMAAYAAS 149 (237)
T ss_pred EECCCCCCCCCcccCCHHHHHHHHhHHHHHHH-HHHHHHHHHHhcCCeEEEEeccccccC---------CCCCCcchHHh
Confidence 9999975332 123356788999999996 666555442 3459999999654211 11236789999
Q ss_pred HHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHH
Q 022280 155 KVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILA 227 (300)
Q Consensus 155 K~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 227 (300)
|.+.+.+++.++. ++.+++|+.+..+.... ..+ . .+...... ....+..++|+++++.+
T Consensus 150 Kaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~----~~~--~-~~~~~~~~-------~~~~~~~p~~~a~~~~~ 215 (237)
T PRK12742 150 KSALQGMARGLARDFGPRGITINVVQPGPIDTDANPA----NGP--M-KDMMHSFM-------AIKRHGRPEEVAGMVAW 215 (237)
T ss_pred HHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcccc----ccH--H-HHHHHhcC-------CCCCCCCHHHHHHHHHH
Confidence 9999998876543 45778888776543211 101 1 11111111 12356789999999999
Q ss_pred HHhccccccccccceeeecCC
Q 022280 228 LTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 228 ~~~~~~~~~~~~~~i~ni~~~ 248 (300)
++...... ..+.++.+.+|
T Consensus 216 l~s~~~~~--~~G~~~~~dgg 234 (237)
T PRK12742 216 LAGPEASF--VTGAMHTIDGA 234 (237)
T ss_pred HcCcccCc--ccCCEEEeCCC
Confidence 98763221 11236777665
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=159.26 Aligned_cols=223 Identities=19% Similarity=0.169 Sum_probs=148.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
+++++|||||+|+||+++++.|+++| ++|++++|+.+....+...+ +..+.++++|+++++++.++++ ++
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDG---FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTF 77 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999999999 89999999866554443322 3456678999999998766555 35
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|+||||||...... ..+.++..+++|+.+++ .+++.+.+ .+ .+++|++||...+.+...
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 148 (256)
T PRK08643 78 GDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVI-WGIQAAQEAFKKLGHGGKIINATSQAGVVGNPE-------- 148 (256)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCCEEEEECccccccCCCC--------
Confidence 68999999998754321 12344677899999985 55555443 23 358999999776544322
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCC-----CCchHHHHHHHHhcCCceeeccCccc
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVP-----KSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.+|.+++.+++.++. +++.++|+.+..+....... ...+..+........ ....
T Consensus 149 --~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 219 (256)
T PRK08643 149 --LAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKD-------ITLG 219 (256)
T ss_pred --CchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhcc-------CCCC
Confidence 56899999999988877653 46778888886653110000 000000100000000 0123
Q ss_pred CceeHHHHHHHHHHHHhccc--cccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~ 249 (300)
.+..++|++.++.+++.... ..|+ ++.+.+|.
T Consensus 220 ~~~~~~~va~~~~~L~~~~~~~~~G~----~i~vdgg~ 253 (256)
T PRK08643 220 RLSEPEDVANCVSFLAGPDSDYITGQ----TIIVDGGM 253 (256)
T ss_pred CCcCHHHHHHHHHHHhCccccCccCc----EEEeCCCe
Confidence 46789999999999997532 2333 77777664
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=158.06 Aligned_cols=216 Identities=13% Similarity=0.137 Sum_probs=150.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
.++++|||||+|+||+.+++.|+++| ++|++++|+.++.....+. .+..+.++++|+++.++++++++. +
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G---~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG---AKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999 8899999986544433322 244667789999998887666654 3
Q ss_pred CCCCEEEEcccccCcc-------------ccccChhhhhhcccccchHHHHHhhh----hc-cCCeEEEeeccccccCCC
Q 022280 75 GQPDVVVNCAALSVPR-------------VCENDPDSAMSINVPSSLVNWLSSFT----EN-KENLLIHLSTDQVYEGVK 136 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~-------------~~~~~~~~~~~~nv~~~~~~l~~~~~----~~-~~~~~v~~SS~~~~~~~~ 136 (300)
+++|+|||+||..... .+.+.++..+++|+.+++ .+.+.+. +. .-+++|++||...++..
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~- 158 (253)
T PRK08217 81 GQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVF-LCGREAAAKMIESGSKGVIINISSIARAGNM- 158 (253)
T ss_pred CCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCCeEEEEEccccccCCC-
Confidence 6799999999964321 112334567889999885 5554333 22 23479999998776542
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc
Q 022280 137 SFYKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH 209 (300)
Q Consensus 137 ~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
+...|+.+|.+.+.+++.++ .+++.++|+.+.++.... ..+.+..... ...
T Consensus 159 ----------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~-----~~~~~~~~~~-~~~------ 216 (253)
T PRK08217 159 ----------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAA-----MKPEALERLE-KMI------ 216 (253)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccc-----cCHHHHHHHH-hcC------
Confidence 25789999999999887664 356789999987764321 1122222211 111
Q ss_pred CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 210 DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
..+.+.+++|+++++.++++.....|+ +|+++++.
T Consensus 217 -~~~~~~~~~~~a~~~~~l~~~~~~~g~----~~~~~gg~ 251 (253)
T PRK08217 217 -PVGRLGEPEEIAHTVRFIIENDYVTGR----VLEIDGGL 251 (253)
T ss_pred -CcCCCcCHHHHHHHHHHHHcCCCcCCc----EEEeCCCc
Confidence 223467899999999999975433444 89998864
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-21 Score=162.63 Aligned_cols=192 Identities=18% Similarity=0.204 Sum_probs=141.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCC--ceeEEEeecCCchhHHHHHH----hcCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH--SFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
+|+++||||+|+||+++++.|+++| ++|++++|+.+....+.+.+.. .+.++.+|++|++++.+.++ +++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG---ATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 5799999999999999999999999 8999999986665555443322 57789999999998766554 3567
Q ss_pred CCEEEEcccccCccc-----cccChhhhhhcccccchHHHHH----hhhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV-----CENDPDSAMSINVPSSLVNWLS----SFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 77 ~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~~l~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+|++||+||...... ..+.++..+++|+.|++ .+++ .+++.+.++||++||...+.+.+.
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~-~l~~~~l~~~~~~~~~~iv~isS~~~~~~~~~---------- 147 (257)
T PRK07024 79 PDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMV-ATFQPFIAPMRAARRGTLVGIASVAGVRGLPG---------- 147 (257)
T ss_pred CCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHH-HHHHHHHHHHHhcCCCEEEEEechhhcCCCCC----------
Confidence 999999999754321 22345678999999996 6554 555666779999999776544332
Q ss_pred CChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.||.+.+.+++.++ .++.++||+.+.++.... .... ...++.++|
T Consensus 148 ~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----------------~~~~-------~~~~~~~~~ 204 (257)
T PRK07024 148 AGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH----------------NPYP-------MPFLMDADR 204 (257)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc----------------CCCC-------CCCccCHHH
Confidence 5689999999999886653 367889999987653210 0000 001357999
Q ss_pred HHHHHHHHHhc
Q 022280 221 VVKIILALTNR 231 (300)
Q Consensus 221 ~a~~~~~~~~~ 231 (300)
+++.++.++++
T Consensus 205 ~a~~~~~~l~~ 215 (257)
T PRK07024 205 FAARAARAIAR 215 (257)
T ss_pred HHHHHHHHHhC
Confidence 99999999987
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=155.54 Aligned_cols=213 Identities=13% Similarity=0.100 Sum_probs=143.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~~ 77 (300)
++|++|||||+|+||+++++.|+++| ++|++++|+++......... ++.++.+|++|.++++..++. ++++
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 75 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQG---QPVIVSYRTHYPAIDGLRQA--GAQCIQADFSTNAGIMAFIDELKQHTDGL 75 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCC---CeEEEEeCCchhHHHHHHHc--CCEEEEcCCCCHHHHHHHHHHHHhhCCCc
Confidence 36799999999999999999999999 89999999865433222222 356789999999887766554 4679
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hcc--CCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENK--ENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~--~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
|++||+||..... ...+.++..+++|+.++. .+.+.+. +.+ .+++|++||.....+...
T Consensus 76 d~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~-~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~---------- 144 (236)
T PRK06483 76 RAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPY-LLNLALEDLLRGHGHAASDIIHITDYVVEKGSDK---------- 144 (236)
T ss_pred cEEEECCccccCCCcCccCHHHHHHHHHHcchHHH-HHHHHHHHHHHhCCCCCceEEEEcchhhccCCCC----------
Confidence 9999999975332 123456788999999985 5544443 333 458999998765433222
Q ss_pred CChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
...|+.||.+.+.+++.++. ++..++|+.+.-+.. . ...+..... ...+ ...+..++|+
T Consensus 145 ~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~----~---~~~~~~~~~-~~~~-------~~~~~~~~~v 209 (236)
T PRK06483 145 HIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEG----D---DAAYRQKAL-AKSL-------LKIEPGEEEI 209 (236)
T ss_pred CccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCC----C---CHHHHHHHh-ccCc-------cccCCCHHHH
Confidence 56899999999999987654 345577776532110 0 011111111 1111 1234579999
Q ss_pred HHHHHHHHhccccccccccceeeecCCC
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++++.+++......|+ ++.+.+|.
T Consensus 210 a~~~~~l~~~~~~~G~----~i~vdgg~ 233 (236)
T PRK06483 210 IDLVDYLLTSCYVTGR----SLPVDGGR 233 (236)
T ss_pred HHHHHHHhcCCCcCCc----EEEeCccc
Confidence 9999999975444444 78887764
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=162.06 Aligned_cols=224 Identities=14% Similarity=0.068 Sum_probs=150.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
+++++|||||+|+||+++++.|+++| ++|++++|+++....+...++..+.++++|++|.+++..+++ .++++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEG---ARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 45899999999999999999999999 899999998776666665555667789999999987666554 45789
Q ss_pred CEEEEcccccCcc-----cccc----ChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR-----VCEN----DPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 78 d~vih~a~~~~~~-----~~~~----~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
|++||+||+.... ...+ .++..+++|+.+++ .+++++.. ...+++|++||...+.+...
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-------- 152 (263)
T PRK06200 82 DCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYL-LGAKAALPALKASGGSMIFTLSNSSFYPGGG-------- 152 (263)
T ss_pred CEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHH-HHHHHHHHHHHhcCCEEEEECChhhcCCCCC--------
Confidence 9999999975321 1111 15567899999986 77666653 22358999999887755433
Q ss_pred CCCChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCC--C--C--chHHHHHHHHhcCCceeeccCccc
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVP--K--S--LPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~--~--~--~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+++.+++.++. ++..+.|+.+.-+-...... . . .... ....+... ....
T Consensus 153 --~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~p~~ 222 (263)
T PRK06200 153 --GPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPG-LADMIAAI-------TPLQ 222 (263)
T ss_pred --CchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccc-hhHHhhcC-------CCCC
Confidence 56899999999999887654 33456677664332110000 0 0 0000 01111110 1234
Q ss_pred CceeHHHHHHHHHHHHhcc-ccccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRW-LSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~-~~~~~~~~~i~ni~~~~ 249 (300)
.+..++|++.++++++... ... ..+.++.+.+|.
T Consensus 223 r~~~~~eva~~~~fl~s~~~~~~--itG~~i~vdgG~ 257 (263)
T PRK06200 223 FAPQPEDHTGPYVLLASRRNSRA--LTGVVINADGGL 257 (263)
T ss_pred CCCCHHHHhhhhhheecccccCc--ccceEEEEcCce
Confidence 6788999999999998753 211 113377776653
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=156.13 Aligned_cols=222 Identities=16% Similarity=0.112 Sum_probs=149.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhc---CCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.++++|||||+|+||++++++|+++| ++|++.+|+.+. ...+.+. .+..+.++.+|++|.++++.+++ .
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G---~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAG---ADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 899999987543 2333222 23456778999999988766554 3
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||..... ...+.++..+++|+.+++ .+++++ .+.+.+++|++||...+...+.
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 154 (254)
T PRK06114 84 LGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVF-LSCQAEARAMLENGGGSIVNIASMSGIIVNRG-------- 154 (254)
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhH-HHHHHHHHHHHhcCCcEEEEECchhhcCCCCC--------
Confidence 57899999999976432 123346778999999996 655554 3455679999999775533221
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
.+...|+.+|.+.+.+++.++. ++.+++|+.+..+.... +.. . ... ..+.... ....+..+
T Consensus 155 ~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~--~~~-~-~~~-~~~~~~~-------p~~r~~~~ 222 (254)
T PRK06114 155 LLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTR--PEM-V-HQT-KLFEEQT-------PMQRMAKV 222 (254)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccc--ccc-h-HHH-HHHHhcC-------CCCCCcCH
Confidence 1246899999999998887643 46778888887653221 110 1 111 1111111 22356789
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|++..+++++..... -..+.++.+.+|.
T Consensus 223 ~dva~~~~~l~s~~~~--~~tG~~i~~dgg~ 251 (254)
T PRK06114 223 DEMVGPAVFLLSDAAS--FCTGVDLLVDGGF 251 (254)
T ss_pred HHHHHHHHHHcCcccc--CcCCceEEECcCE
Confidence 9999999999875321 1123377777653
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=156.93 Aligned_cols=221 Identities=15% Similarity=0.098 Sum_probs=147.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~ 76 (300)
|.+++|+||||+|+||++++++|+++| ++|++++|+.+......+.+.. .++++|+++.++++.+++. +++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEG---ATVVVGDIDPEAGKAAADEVGG--LFVPTDVTDEDAVNALFDTAAETYGS 79 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHcCC--cEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999 8999999986655544443322 4688999999887776654 368
Q ss_pred CCEEEEcccccCcc------ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccc-cccCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR------VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQ-VYEGVKSFYKEEDEI 145 (300)
Q Consensus 77 ~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~-~~~~~~~~~~E~~~~ 145 (300)
+|+|||+||...+. .+.+.++..+++|+.+++ .+++.+. +.+.+++|++||.. +++....
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~~~-------- 150 (255)
T PRK06057 80 VDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVY-LCCKAALPHMVRQGKGSIINTASFVAVMGSATS-------- 150 (255)
T ss_pred CCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHH-HHHHHHHHHHHHhCCcEEEEEcchhhccCCCCC--------
Confidence 99999999975321 122335678899999985 6555543 45556899999854 5554322
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.+|++.+.+.+.+. .+++++||+.+.++....... ..+ ......+ ..+ ....+.++
T Consensus 151 --~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~-~~~-~~~~~~~---~~~-----~~~~~~~~ 218 (255)
T PRK06057 151 --QISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFA-KDP-ERAARRL---VHV-----PMGRFAEP 218 (255)
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhcc-CCH-HHHHHHH---hcC-----CCCCCcCH
Confidence 5679999988877776432 356889999998764321111 011 1111111 011 12357899
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+++++.+++...... ..+..+.+.++.
T Consensus 219 ~~~a~~~~~l~~~~~~~--~~g~~~~~~~g~ 247 (255)
T PRK06057 219 EEIAAAVAFLASDDASF--ITASTFLVDGGI 247 (255)
T ss_pred HHHHHHHHHHhCccccC--ccCcEEEECCCe
Confidence 99999999888753221 112366776653
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-21 Score=161.42 Aligned_cols=203 Identities=16% Similarity=0.090 Sum_probs=140.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-----CCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-----GQP 77 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~ 77 (300)
+++++||||+|+||+++++.|+++| ++|++..|+.++.+.+.+ .++..+++|++|.+++...++.. +.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g---~~v~~~~r~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~ 75 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRG---YRVLAACRKPDDVARMNS---LGFTGILLDLDDPESVERAADEVIALTDNRL 75 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHhHHHHh---CCCeEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999 899999998665544332 23667899999988776655542 578
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHH----HHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVN----WLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~----l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|.+||+||...... +.+.++..+++|+.|+. + +++.+++.+.+++|++||...+.+... ..
T Consensus 76 ~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~----------~~ 144 (256)
T PRK08017 76 YGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTH-QLTMLLLPAMLPHGEGRIVMTSSVMGLISTPG----------RG 144 (256)
T ss_pred eEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHhhcCCCEEEEEcCcccccCCCC----------cc
Confidence 99999999654321 22345578899999885 5 466666777789999999755443322 67
Q ss_pred hhHHHHHHHHHHHHHH-------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEK-------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~-------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.+|...|.+.+.+ +.+++++||+.+..+.... +.. .....+....+...+.+++++|++
T Consensus 145 ~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~~d~a 213 (256)
T PRK08017 145 AYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDN----------VNQ-TQSDKPVENPGIAARFTLGPEAVV 213 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhc----------ccc-hhhccchhhhHHHhhcCCCHHHHH
Confidence 8999999999887643 2356778886654321100 000 000111111122335689999999
Q ss_pred HHHHHHHhccc
Q 022280 223 KIILALTNRWL 233 (300)
Q Consensus 223 ~~~~~~~~~~~ 233 (300)
+++..+++++.
T Consensus 214 ~~~~~~~~~~~ 224 (256)
T PRK08017 214 PKLRHALESPK 224 (256)
T ss_pred HHHHHHHhCCC
Confidence 99999998854
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=158.13 Aligned_cols=221 Identities=15% Similarity=0.087 Sum_probs=148.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|+++++|||||+|+||.+++++|+++| ++|++++|+.+....+.+.+ +....++++|+++.++++.+++ .
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQG---AHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 346889999999999999999999999 89999999865554444332 3456678999999988766554 3
Q ss_pred cCCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+|||+|+.... ....+.++..+++|+.+++ .+++++ ++.+.+++|++||...+.+.+
T Consensus 83 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------- 153 (252)
T PRK07035 83 HGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYF-FMSVEAGKLMKEQGGGSIVNVASVNGVSPGD-------- 153 (252)
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhCCCcEEEEECchhhcCCCC--------
Confidence 5679999999986431 1222345678899999986 665554 445667999999976554432
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
+...|+.||.+++.+++.++. ++..+.|+.+-.+....... ......... ... ....+..
T Consensus 154 --~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~---~~~~~~~~~-~~~-------~~~~~~~ 220 (252)
T PRK07035 154 --FQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFK---NDAILKQAL-AHI-------PLRRHAE 220 (252)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccC---CHHHHHHHH-ccC-------CCCCcCC
Confidence 267899999999999987753 45667777765432111000 001111111 111 1234678
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
++|+++++++++...... ..+.++++.+|
T Consensus 221 ~~~va~~~~~l~~~~~~~--~~g~~~~~dgg 249 (252)
T PRK07035 221 PSEMAGAVLYLASDASSY--TTGECLNVDGG 249 (252)
T ss_pred HHHHHHHHHHHhCccccC--ccCCEEEeCCC
Confidence 999999999999764321 11337777665
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-20 Score=154.82 Aligned_cols=219 Identities=17% Similarity=0.147 Sum_probs=147.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhh---hcCCCceeEEEeecCCchhHHHHHHh----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLL---DALPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
++++++||||+|+||+++++.|+++| ++|++..|+.+. ...+. ...+..+.++.+|+++.+++.+.++.
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADG---FAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999 888887776432 22222 22345677889999999887666653
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++++|+|||+||...... ..+.++..+++|+.+++ .+++++.+. ..+++|++||...+.+.+.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~---------- 149 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAF-VVLREAARHLGQGGRIINLSTSVIALPLPG---------- 149 (245)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHH-HHHHHHHHHhccCcEEEEEeeccccCCCCC----------
Confidence 568999999999754211 22345677899999996 777776552 2358999999776544333
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.+|.+.+.+++.++. ++.+++|+.+-.+..... .......... +.. ....+.+++|
T Consensus 150 ~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~----~~~~~~~~~~-~~~-------~~~~~~~~~d 217 (245)
T PRK12937 150 YGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG----KSAEQIDQLA-GLA-------PLERLGTPEE 217 (245)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc----CCHHHHHHHH-hcC-------CCCCCCCHHH
Confidence 67899999999999887643 456678776654421110 0111222211 111 1224568999
Q ss_pred HHHHHHHHHhccccccccccceeeecCC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
+++++.++++..... ..+.+++++++
T Consensus 218 ~a~~~~~l~~~~~~~--~~g~~~~~~~g 243 (245)
T PRK12937 218 IAAAVAFLAGPDGAW--VNGQVLRVNGG 243 (245)
T ss_pred HHHHHHHHcCccccC--ccccEEEeCCC
Confidence 999999999764221 11337888765
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=158.02 Aligned_cols=221 Identities=14% Similarity=0.137 Sum_probs=153.4
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|.+|+++||||+|+||+++++.|+++| ++|++++|+.+....+.+.+ +..+.++++|+++.+++..+++
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G---~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLG---ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999 89999999866554443322 2356778999999988666554
Q ss_pred -hcCCCCEEEEcccccCc----cccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP----RVCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~----~~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
.++++|+|||+||.... ....+.++..+.+|+.+++ .+++++. +.+.+++|++||...+.+...
T Consensus 84 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~------ 156 (257)
T PRK09242 84 DHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAF-ELSRYAHPLLKQHASSAIVNIGSVSGLTHVRS------ 156 (257)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCceEEEECccccCCCCCC------
Confidence 45789999999997432 1233456778999999996 7766654 355679999999877765433
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.+|.+.+.+++.++. ++..++|+.+..+......+ ...+..... ...+ ...+.
T Consensus 157 ----~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~---~~~~~~~~~-~~~~-------~~~~~ 221 (257)
T PRK09242 157 ----GAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLS---DPDYYEQVI-ERTP-------MRRVG 221 (257)
T ss_pred ----CcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccC---ChHHHHHHH-hcCC-------CCCCc
Confidence 67899999999998887643 56778898887764321111 011121111 1111 22356
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
.++|++.++.+++...... -.+.++++.++
T Consensus 222 ~~~~va~~~~~l~~~~~~~--~~g~~i~~~gg 251 (257)
T PRK09242 222 EPEEVAAAVAFLCMPAASY--ITGQCIAVDGG 251 (257)
T ss_pred CHHHHHHHHHHHhCccccc--ccCCEEEECCC
Confidence 7899999999999753221 11337777665
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=156.24 Aligned_cols=214 Identities=14% Similarity=0.157 Sum_probs=149.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++|+++||||+|+||+++++.|+++| ++|++++|++... ....+.++.+|++++ ++++.+.++++|+|
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G---~~v~~~~r~~~~~------~~~~~~~~~~D~~~~--~~~~~~~~~~id~l 71 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQG---AQVYGVDKQDKPD------LSGNFHFLQLDLSDD--LEPLFDWVPSVDIL 71 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCC---CEEEEEeCCcccc------cCCcEEEEECChHHH--HHHHHHhhCCCCEE
Confidence 356899999999999999999999999 8999998875432 134566789999987 67777777789999
Q ss_pred EEcccccCc-----cccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 81 VNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 81 ih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
||+||.... ....+.++..+++|+.+++ ++++++.. .+.++||++||...+.+... ...|
T Consensus 72 v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------~~~Y 140 (235)
T PRK06550 72 CNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTF-LLTRAYLPQMLERKSGIIINMCSIASFVAGGG----------GAAY 140 (235)
T ss_pred EECCCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEEcChhhccCCCC----------Cccc
Confidence 999996421 1223345678999999996 77776643 44568999999876654333 5689
Q ss_pred HHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 152 GKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
+.+|...+.+.+.++. ++++++|+.+..+......+ ... ........ .....+..++|+|++
T Consensus 141 ~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~---~~~-~~~~~~~~-------~~~~~~~~~~~~a~~ 209 (235)
T PRK06550 141 TASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFE---PGG-LADWVARE-------TPIKRWAEPEEVAEL 209 (235)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccC---chH-HHHHHhcc-------CCcCCCCCHHHHHHH
Confidence 9999999988876543 56789999887664321111 111 11111111 123457889999999
Q ss_pred HHHHHhccccccccccceeeecCCC
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++++..... ...+.++.+.+|.
T Consensus 210 ~~~l~s~~~~--~~~g~~~~~~gg~ 232 (235)
T PRK06550 210 TLFLASGKAD--YMQGTIVPIDGGW 232 (235)
T ss_pred HHHHcChhhc--cCCCcEEEECCce
Confidence 9999965321 1123377777663
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=156.53 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=144.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHHh----c
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
|+++|||||+|+||++++++|+++| ++|++. .|+++....... ..+..+..+++|++|++++.++++. +
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~ 77 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEG---YTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHD 77 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999 888764 455443333322 2234567789999999987776654 4
Q ss_pred CCCCEEEEcccccCccc-----cccChhhhhhcccccchHHHHHhhhhc-------cCCeEEEeeccccccCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV-----CENDPDSAMSINVPSSLVNWLSSFTEN-------KENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~~l~~~~~~~-------~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
+++|+|||+|+...... ..+.++..+++|+.+++ .+++.+... +.++||++||...+.+.+.
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~----- 151 (247)
T PRK09730 78 EPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYF-LCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPG----- 151 (247)
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCC-----
Confidence 68999999999753211 12234578899999986 665554432 1357999999765433221
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
....|+.+|...+.+++.++ .+++++||+.+++|...... ...+..... ...+ ....
T Consensus 152 ----~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~----~~~~~~~~~-~~~~-------~~~~ 215 (247)
T PRK09730 152 ----EYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGG----EPGRVDRVK-SNIP-------MQRG 215 (247)
T ss_pred ----cccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCC----CHHHHHHHH-hcCC-------CCCC
Confidence 13469999999998887653 35688999999998543211 112222211 1111 1123
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
.+++|+++++++++...... ..+.+|++.++
T Consensus 216 ~~~~dva~~~~~~~~~~~~~--~~g~~~~~~g~ 246 (247)
T PRK09730 216 GQPEEVAQAIVWLLSDKASY--VTGSFIDLAGG 246 (247)
T ss_pred cCHHHHHHHHHhhcChhhcC--ccCcEEecCCC
Confidence 47999999999998753211 11236777664
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=156.35 Aligned_cols=219 Identities=15% Similarity=0.149 Sum_probs=151.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhc---CCCceeEEEeecCCchhHHHHHHh----c
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
+++++||||+|+||+++++.|+++| ++|++++|++.. ...+... .+..+.++.+|+++.+++.++++. +
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g---~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDG---YRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEE 78 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999 899999988532 2222221 234577889999999887666543 5
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+|||+||..... ...+.++..+++|+.+++ ++ ++.+++.+.++||++||...+.+...
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~--------- 148 (245)
T PRK12824 79 GPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVF-NVTQPLFAAMCEQGYGRIINISSVNGLKGQFG--------- 148 (245)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhCCeEEEEECChhhccCCCC---------
Confidence 6799999999975321 123345678899999986 66 44445566779999999877755433
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.+|.+.+.+++.++ .++.+++|+.+.++.... ....+..... ... ....+..++
T Consensus 149 -~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~-----~~~~~~~~~~-~~~-------~~~~~~~~~ 214 (245)
T PRK12824 149 -QTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQ-----MGPEVLQSIV-NQI-------PMKRLGTPE 214 (245)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhh-----cCHHHHHHHH-hcC-------CCCCCCCHH
Confidence 5689999999998887664 256778998887664211 1112221111 111 223466799
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
|+++++.+++...... -.++++++++|..
T Consensus 215 ~va~~~~~l~~~~~~~--~~G~~~~~~~g~~ 243 (245)
T PRK12824 215 EIAAAVAFLVSEAAGF--ITGETISINGGLY 243 (245)
T ss_pred HHHHHHHHHcCccccC--ccCcEEEECCCee
Confidence 9999999888653211 1233889988754
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=158.10 Aligned_cols=201 Identities=16% Similarity=0.178 Sum_probs=142.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|+|+||||||+||+++++.|+++| ++|++++|+.+..+.+... .+..+.++++|++|++++..+++ ++++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 77 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG---WRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 589999999999999999999999 8999999986655443332 24467778999999988776654 3468
Q ss_pred CCEEEEcccccCcccc----ccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRVC----ENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+|||+||....... .+.++..+++|+.+++ .+.+. +.+.+.++||++||...+.+... .
T Consensus 78 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~----------~ 146 (270)
T PRK05650 78 IDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVV-KGCKAFLPLFKRQKSGRIVNIASMAGLMQGPA----------M 146 (270)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHH-HHHHHHHHHHHhCCCCEEEEECChhhcCCCCC----------c
Confidence 9999999997654222 1234567899998886 54444 55667779999999877665443 6
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCch--HHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLP--IQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
..|+.+|.+.+.+.+.+.. .+.+++|+.+..+..... ....+ ........ ...+++++
T Consensus 147 ~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~ 213 (270)
T PRK05650 147 SSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSF-RGPNPAMKAQVGKLL------------EKSPITAA 213 (270)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCccccc-ccCchhHHHHHHHHh------------hcCCCCHH
Confidence 7899999998877765543 467889988876642211 00111 01111110 12357899
Q ss_pred HHHHHHHHHHhc
Q 022280 220 DVVKIILALTNR 231 (300)
Q Consensus 220 D~a~~~~~~~~~ 231 (300)
|+|+.++.++++
T Consensus 214 ~vA~~i~~~l~~ 225 (270)
T PRK05650 214 DIADYIYQQVAK 225 (270)
T ss_pred HHHHHHHHHHhC
Confidence 999999999987
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=159.87 Aligned_cols=225 Identities=16% Similarity=0.078 Sum_probs=148.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
.+++++||||+|+||+++++.|+++| ++|++++|+.+....+....+..+.++++|+++.+++.++++ .++++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEG---ARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKI 80 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999 899999998766665554444567778999999887655554 45789
Q ss_pred CEEEEcccccCcc-----ccc----cChhhhhhcccccchHHHHHhhhhc---cCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR-----VCE----NDPDSAMSINVPSSLVNWLSSFTEN---KENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 78 d~vih~a~~~~~~-----~~~----~~~~~~~~~nv~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
|++|||||..... ... +.++..+++|+.+++ .+++++.+. ..+++|++||...+.+...
T Consensus 81 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-------- 151 (262)
T TIGR03325 81 DCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYL-LAVKAALPALVASRGSVIFTISNAGFYPNGG-------- 151 (262)
T ss_pred CEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHH-HHHHHHHHHHhhcCCCEEEEeccceecCCCC--------
Confidence 9999999964311 011 235678999999996 777776542 2258999998766544322
Q ss_pred CCCChhHHHHHHHHHHHHHHcCC------ceeEeeeeeeCCCCCCCCCCCchHHH-----HHHHHhcCCceeeccCcccC
Q 022280 146 APVNVYGKSKVAAEKFIYEKCSN------FAILRSSIIYGPQTISPVPKSLPIQW-----IDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~~------~~ilR~~~v~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+++.+++.++.+ +..+.|+.+..+-..... ....... ..+.++. . .+...
T Consensus 152 --~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~-~~~~~~~~~~~~~~~~~~~--~-----~p~~r 221 (262)
T TIGR03325 152 --GPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKS-LGMADKSISTVPLGDMLKS--V-----LPIGR 221 (262)
T ss_pred --CchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccc-cccccccccccchhhhhhh--c-----CCCCC
Confidence 568999999999999877653 344667666543211000 0000000 0111100 0 12345
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+..++|+++++++++...... -..+.++.+.+|.
T Consensus 222 ~~~p~eva~~~~~l~s~~~~~-~~tG~~i~vdgg~ 255 (262)
T TIGR03325 222 MPDAEEYTGAYVFFATRGDTV-PATGAVLNYDGGM 255 (262)
T ss_pred CCChHHhhhheeeeecCCCcc-cccceEEEecCCe
Confidence 788999999999988753211 0112377777653
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-21 Score=165.33 Aligned_cols=217 Identities=14% Similarity=0.093 Sum_probs=144.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~~ 77 (300)
.+++|+||||||+||++++++|+++| ++|++++|+.+........+. .+.++++|++|.++++.+++. ++++
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G---~~Vv~~~R~~~~~~~~~~~l~-~v~~~~~Dl~d~~~v~~~~~~~~~~~~~i 100 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAG---AHVIVPARRPDVAREALAGID-GVEVVMLDLADLESVRAFAERFLDSGRRI 100 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhh-hCeEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 56899999999999999999999999 899999998665554444332 367789999999987776654 4689
Q ss_pred CEEEEcccccCcc--ccccChhhhhhcccccchHHHHH----hhhhccCCeEEEeeccccccCCCC--CCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR--VCENDPDSAMSINVPSSLVNWLS----SFTENKENLLIHLSTDQVYEGVKS--FYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~--~~~~~~~~~~~~nv~~~~~~l~~----~~~~~~~~~~v~~SS~~~~~~~~~--~~~E~~~~~p~~ 149 (300)
|+||||||..... ...+.++..+++|+.+++ .+.+ .+++.+.++||++||......... ..+...+..+..
T Consensus 101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~ 179 (315)
T PRK06196 101 DILINNAGVMACPETRVGDGWEAQFATNHLGHF-ALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHFTRGYDKWL 179 (315)
T ss_pred CEEEECCCCCCCCCccCCccHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCccCCCChHH
Confidence 9999999975432 223346778999999974 4444 444555569999999754322111 011112233456
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCch-HHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLP-IQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
.|+.||.+.+.+.+.++ .+++++|||.+.++........... ..++.. ...++ ...+..++|+
T Consensus 180 ~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~ 250 (315)
T PRK06196 180 AYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDE---HGNPI------DPGFKTPAQG 250 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhh---hhhhh------hhhcCCHhHH
Confidence 89999999998876553 3578899999988743211000000 001100 00000 0124578999
Q ss_pred HHHHHHHHhcc
Q 022280 222 VKIILALTNRW 232 (300)
Q Consensus 222 a~~~~~~~~~~ 232 (300)
|..+++++..+
T Consensus 251 a~~~~~l~~~~ 261 (315)
T PRK06196 251 AATQVWAATSP 261 (315)
T ss_pred HHHHHHHhcCC
Confidence 99999999764
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=159.50 Aligned_cols=200 Identities=16% Similarity=0.098 Sum_probs=141.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC-CceeEEEeecCCchhHHHHHHh-----cCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP-HSFVFFDVDLKSGSGFDAVALK-----FGQ 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~-----~~~ 76 (300)
||++|||||||+||++++++|+++| ++|++++|+++....+..... ..+.++.+|++|.+++.++++. .++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG---WRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999 899999998776665554432 4677889999999987776553 467
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+||||||...... +.+.++..+++|+.+++ .+++++. ..+.+++|++||.....+... .
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----------~ 146 (260)
T PRK08267 78 LDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVL-NGAHAALPYLKATPGARVINTSSASAIYGQPG----------L 146 (260)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCCEEEEeCchhhCcCCCC----------c
Confidence 899999999764322 22345678999999996 7776664 345579999999765433333 5
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.||.+.+.+.++++. ++.+++|+.+-.+..... . . ........ ...-.+.++|+
T Consensus 147 ~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~--~--~-~~~~~~~~----------~~~~~~~~~~v 211 (260)
T PRK08267 147 AVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGT--S--N-EVDAGSTK----------RLGVRLTPEDV 211 (260)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccc--c--c-hhhhhhHh----------hccCCCCHHHH
Confidence 6899999999998887643 456677777654321100 0 0 00000110 01113668999
Q ss_pred HHHHHHHHhc
Q 022280 222 VKIILALTNR 231 (300)
Q Consensus 222 a~~~~~~~~~ 231 (300)
+++++.+++.
T Consensus 212 a~~~~~~~~~ 221 (260)
T PRK08267 212 AEAVWAAVQH 221 (260)
T ss_pred HHHHHHHHhC
Confidence 9999999976
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=154.70 Aligned_cols=194 Identities=15% Similarity=0.143 Sum_probs=141.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC--CceeEEEeecCCchhHHHHHHh----cCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLKSGSGFDAVALK----FGQ 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~----~~~ 76 (300)
+++++||||+|+||++++++|+++| ++|++++|+++....+.+.+. ..+.++++|++|.+++...++. +++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEG---YKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCC---CEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999999 899999998765554444332 4577789999999887766653 468
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
+|+|||+++...... ..+.++..+++|+.+++ .+++++.+ .+.+++|++||...+.+... ..
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~----------~~ 151 (237)
T PRK07326 83 LDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAF-YTIKAAVPALKRGGGYIINISSLAGTNFFAG----------GA 151 (237)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHH-HHHHHHHHHHHHCCeEEEEECChhhccCCCC----------Cc
Confidence 999999998754321 22335577899999996 77777654 34568999999776544322 56
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.+|.+.+.+.+.+. .+++++||+.+..+.... .+ . .. ....+.++|++
T Consensus 152 ~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~-~~----~----------~~-------~~~~~~~~d~a 209 (237)
T PRK07326 152 AYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGH-TP----S----------EK-------DAWKIQPEDIA 209 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccc-cc----c----------hh-------hhccCCHHHHH
Confidence 79999999988777653 357889998886543211 00 0 00 00136799999
Q ss_pred HHHHHHHhcc
Q 022280 223 KIILALTNRW 232 (300)
Q Consensus 223 ~~~~~~~~~~ 232 (300)
+.++++++.+
T Consensus 210 ~~~~~~l~~~ 219 (237)
T PRK07326 210 QLVLDLLKMP 219 (237)
T ss_pred HHHHHHHhCC
Confidence 9999999885
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-20 Score=152.06 Aligned_cols=215 Identities=17% Similarity=0.142 Sum_probs=146.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc---CCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF---GQP 77 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~ 77 (300)
|.+|++|||||+|+||+++++.|+++| ++|+++.|+.+.. .+ ..++++|++|.+++...++.. .++
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G---~~v~~~~r~~~~~------~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~ 69 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLG---HQVIGIARSAIDD------FP--GELFACDLADIEQTAATLAQINEIHPV 69 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC---CEEEEEeCCcccc------cC--ceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence 567899999999999999999999999 8999999986541 11 245789999998766655421 268
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+|||+||...... ..+.++..+++|+.+++ .+.++ +++.+.+++|++||...|+.. ...
T Consensus 70 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~~ 137 (234)
T PRK07577 70 DAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAV-QVTQAFLEGMKLREQGRIVNICSRAIFGAL-----------DRT 137 (234)
T ss_pred cEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEEccccccCCC-----------Cch
Confidence 99999999765432 22345677899999985 55444 445667899999998776442 156
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.+|.+.+.+++.++ .+++++||+.+..+......+. ......... ... ....+..++|++
T Consensus 138 ~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~--~~~~~~~~~-~~~-------~~~~~~~~~~~a 207 (234)
T PRK07577 138 SYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPV--GSEEEKRVL-ASI-------PMRRLGTPEEVA 207 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCccccccccc--chhHHHHHh-hcC-------CCCCCcCHHHHH
Confidence 89999999998887653 4678899988876542111110 001111111 111 112345799999
Q ss_pred HHHHHHHhccccccccccceeeecCCCc
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
.+++.++..+... ..+.++++.++..
T Consensus 208 ~~~~~l~~~~~~~--~~g~~~~~~g~~~ 233 (234)
T PRK07577 208 AAIAFLLSDDAGF--ITGQVLGVDGGGS 233 (234)
T ss_pred HHHHHHhCcccCC--ccceEEEecCCcc
Confidence 9999999764221 1133788877643
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-21 Score=162.41 Aligned_cols=163 Identities=16% Similarity=0.156 Sum_probs=125.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-----CC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-----GQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~ 76 (300)
++++++||||+|+||+++++.|+++| ++|++++|+++....+.. ..+.++.+|++|.++++.+++.. ++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G---~~Vi~~~r~~~~~~~l~~---~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~ 76 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDG---WRVFATCRKEEDVAALEA---EGLEAFQLDYAEPESIAALVAQVLELSGGR 76 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHH---CCceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 35789999999999999999999999 899999998766555443 24677899999999877776543 57
Q ss_pred CCEEEEcccccCcccc----ccChhhhhhcccccch---HHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRVC----ENDPDSAMSINVPSSL---VNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~---~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
+|+||||||....... .+..+..+++|+.|.+ ..+++.+.+.+.++||++||...+.+.. +..
T Consensus 77 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~----------~~~ 146 (277)
T PRK05993 77 LDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPMK----------YRG 146 (277)
T ss_pred ccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCCCC----------ccc
Confidence 9999999997644321 2234567899999853 2566777777778999999976654432 267
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCC
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGP 180 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~ 180 (300)
.|+.||.+++.+++.+. .++.+++||.+-.+
T Consensus 147 ~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 147 AYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 89999999999887653 46788999887644
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=155.78 Aligned_cols=221 Identities=14% Similarity=0.123 Sum_probs=149.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHH----hcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL----KFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~----~~~ 75 (300)
+++++||||+|+||++++++|+++| ++|++++|+.+......+ ..+..+.++.+|++|.+++..+++ .++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREG---AKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 4899999999999999999999999 899999998665443332 234567788999999988766554 357
Q ss_pred CCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 76 ~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++|+|||+||..... ...+.++..+++|+.+++ .++++ +.+.+.+++|++||...+.+...
T Consensus 84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~--------- 153 (253)
T PRK06172 84 RLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVW-LCMKYQIPLMLAQGGGAIVNTASVAGLGAAPK--------- 153 (253)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEECchhhccCCCC---------
Confidence 899999999975321 123455678899999885 55443 33455679999999888766544
Q ss_pred CCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.+|.+.+.+++.++.+ +.++.|+.+-.+.... .... ..... ..+... .....+..++
T Consensus 154 -~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~-~~~~-~~~~~-~~~~~~-------~~~~~~~~p~ 222 (253)
T PRK06172 154 -MSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRR-AYEA-DPRKA-EFAAAM-------HPVGRIGKVE 222 (253)
T ss_pred -CchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhh-hccc-ChHHH-HHHhcc-------CCCCCccCHH
Confidence 678999999999998877543 3556666664332110 0000 01111 111011 1123467899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|+++.+++++..... ...++++++.+|.
T Consensus 223 ~ia~~~~~l~~~~~~--~~~G~~i~~dgg~ 250 (253)
T PRK06172 223 EVASAVLYLCSDGAS--FTTGHALMVDGGA 250 (253)
T ss_pred HHHHHHHHHhCcccc--CcCCcEEEECCCc
Confidence 999999999976422 1223478887764
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=157.84 Aligned_cols=220 Identities=13% Similarity=0.054 Sum_probs=149.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhhh---cCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
+++++|||||+|+||+++++.|+++| ++|+++.++.. ....+.+ ..+..+.++.+|++++++++.+++ .
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQG---FDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999 88988766533 2332222 234567788999999988666554 4
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+|||+||..... ...+.++..+.+|+.+++ .+++++.+ .+ .++||++||.....+.
T Consensus 78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~--------- 147 (256)
T PRK12743 78 LGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAF-LCSQIAARHMVKQGQGGRIINITSVHEHTPL--------- 147 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCeEEEEEeeccccCCC---------
Confidence 57899999999975432 122345678899999996 77776654 22 3589999997543332
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
.+...|+.+|.+.+.++++++. ++..++|+.+..+..... ......... .. .....+.+
T Consensus 148 -~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~-----~~~~~~~~~-~~-------~~~~~~~~ 213 (256)
T PRK12743 148 -PGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMD-----DSDVKPDSR-PG-------IPLGRPGD 213 (256)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCcccccc-----ChHHHHHHH-hc-------CCCCCCCC
Confidence 2367899999999998876643 467799998887642210 111111111 11 11224568
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++|++.++.++++..... ..+.++.+.++..
T Consensus 214 ~~dva~~~~~l~~~~~~~--~~G~~~~~dgg~~ 244 (256)
T PRK12743 214 THEIASLVAWLCSEGASY--TTGQSLIVDGGFM 244 (256)
T ss_pred HHHHHHHHHHHhCccccC--cCCcEEEECCCcc
Confidence 999999999998753221 1123788877643
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-20 Score=154.83 Aligned_cols=206 Identities=15% Similarity=0.118 Sum_probs=145.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHh----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
|.+++|+||||+|+||+++++.|+++| ++|+++.|+++..+.+...+ +..+.++.+|+++.+++...++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G---~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAG---AKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 356899999999999999999999999 89999999876655444322 34577889999999887666553
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc--------CCeEEEeeccccccCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK--------ENLLIHLSTDQVYEGVKS 137 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~--------~~~~v~~SS~~~~~~~~~ 137 (300)
++++|+|||+|+...... ..+.++.++++|+.+++ .+++.+.. .. .+++|++||...+.+...
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~ 162 (258)
T PRK06949 84 AGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAF-FVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLPQ 162 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhH-HHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCCCC
Confidence 468999999999754321 22346678899999996 77766542 21 258999999877654332
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC
Q 022280 138 FYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD 210 (300)
Q Consensus 138 ~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
...|+.+|.+.+.+++.++. ++.+++|+.++++....... .. ....+... +
T Consensus 163 ----------~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~----~~-~~~~~~~~--~----- 220 (258)
T PRK06949 163 ----------IGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWE----TE-QGQKLVSM--L----- 220 (258)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccC----hH-HHHHHHhc--C-----
Confidence 67899999999998877543 56789999998775321100 00 01111010 0
Q ss_pred cccCceeHHHHHHHHHHHHhcc
Q 022280 211 ECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 211 ~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
....+..++|+++.+.+++...
T Consensus 221 ~~~~~~~p~~~~~~~~~l~~~~ 242 (258)
T PRK06949 221 PRKRVGKPEDLDGLLLLLAADE 242 (258)
T ss_pred CCCCCcCHHHHHHHHHHHhChh
Confidence 1234667999999999998753
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=164.94 Aligned_cols=202 Identities=14% Similarity=0.132 Sum_probs=142.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.+++|+||||+|+||+++++.|+++| ++|+++.|+++....+.+. .+..+.++.+|++|.++++.+++ .+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G---~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRG---AKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 35789999999999999999999999 8999999986655444332 24567778999999998776654 46
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+++|++||+||...... ..+.++..+++|+.+++. .+++.+++.+.++||++||...+.+.+.
T Consensus 84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~~---------- 153 (334)
T PRK07109 84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIPL---------- 153 (334)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCCc----------
Confidence 78999999999754321 223456778999888752 3455555566679999999988866443
Q ss_pred CChhHHHHHHHHHHHHHHcC---------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS---------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~---------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.+|.+.+.+.+.+.. ++++++|+.+-.|.. ......+ .. .......+..+
T Consensus 154 ~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~----------~~~~~~~-~~-----~~~~~~~~~~p 217 (334)
T PRK07109 154 QSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQF----------DWARSRL-PV-----EPQPVPPIYQP 217 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchh----------hhhhhhc-cc-----cccCCCCCCCH
Confidence 67899999999988776542 345666666644321 0111111 00 00112346789
Q ss_pred HHHHHHHHHHHhcc
Q 022280 219 RDVVKIILALTNRW 232 (300)
Q Consensus 219 ~D~a~~~~~~~~~~ 232 (300)
+|+|++++++++.+
T Consensus 218 e~vA~~i~~~~~~~ 231 (334)
T PRK07109 218 EVVADAILYAAEHP 231 (334)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999874
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-20 Score=154.52 Aligned_cols=220 Identities=17% Similarity=0.166 Sum_probs=149.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
|+++++|||||||+||+++++.|+++| ++|+++ .|+++....+... .+..+.++.+|++|++++..+++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEG---AKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999 889888 7876554433322 23457778999999998766554
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.++++|+|||++|...... ..+.++..+++|+.+++ ++++.+.. .+.+++|++||...+.+...
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~------- 151 (247)
T PRK05565 80 KFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVM-LLTRYALPYMIKRKSGVIVNISSIWGLIGASC------- 151 (247)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEECCHhhccCCCC-------
Confidence 3467999999999763321 22335677899999986 66666543 45678999999776544332
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.+|.+.+.+++.++ .+++++||+.+..+.... .......... . ......+..
T Consensus 152 ---~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~-----~~~~~~~~~~-~-------~~~~~~~~~ 215 (247)
T PRK05565 152 ---EVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSS-----FSEEDKEGLA-E-------EIPLGRLGK 215 (247)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccc-----cChHHHHHHH-h-------cCCCCCCCC
Confidence 5689999999888776653 256789998886543211 1111111111 1 112234678
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++|+++.+++++...... ..++.+++.++.
T Consensus 216 ~~~va~~~~~l~~~~~~~--~~g~~~~~~~~~ 245 (247)
T PRK05565 216 PEEIAKVVLFLASDDASY--ITGQIITVDGGW 245 (247)
T ss_pred HHHHHHHHHHHcCCccCC--ccCcEEEecCCc
Confidence 999999999999764221 223477777653
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-20 Score=154.15 Aligned_cols=216 Identities=19% Similarity=0.166 Sum_probs=146.5
Q ss_pred CCCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCCC-----------chhhhh---hcCCCceeEEEeecCCc
Q 022280 1 MSKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHSTP-----------LPQLLL---DALPHSFVFFDVDLKSG 64 (300)
Q Consensus 1 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~~-----------~~~~~~---~~~~~~~~~~~~D~~~~ 64 (300)
|++++|||||||| +||.++++.|+++| ++|++++|++. ....+. ...+..+.++.+|+++.
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G---~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 79 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKG---IDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQP 79 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcC---CcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 3567899999995 79999999999999 89999988721 111111 12245678899999998
Q ss_pred hhHHHHHHh----cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccc
Q 022280 65 SGFDAVALK----FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVY 132 (300)
Q Consensus 65 ~~~~~~~~~----~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~ 132 (300)
+++...+++ ++++|+|||+||...... ..+.++..+++|+.+++ .+++++.. .+.+++|++||...+
T Consensus 80 ~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~ss~~~~ 158 (256)
T PRK12748 80 YAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATM-LLSSAFAKQYDGKAGGRIINLTSGQSL 158 (256)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHhhhcCCeEEEEECCcccc
Confidence 887665543 568999999999754322 22345677899999996 88777653 244699999998877
Q ss_pred cCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCce
Q 022280 133 EGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKV 205 (300)
Q Consensus 133 ~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (300)
.+..+ ...|+.+|.+.+.+++.++. +++.++|+.+..+... ...... +....
T Consensus 159 ~~~~~----------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~--------~~~~~~-~~~~~-- 217 (256)
T PRK12748 159 GPMPD----------ELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWIT--------EELKHH-LVPKF-- 217 (256)
T ss_pred CCCCC----------chHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCC--------hhHHHh-hhccC--
Confidence 65433 56899999999998877543 4677888776543211 011111 10110
Q ss_pred eeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 206 EFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 206 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
....+..++|+++++.+++...... ..+.++++.++
T Consensus 218 -----~~~~~~~~~~~a~~~~~l~~~~~~~--~~g~~~~~d~g 253 (256)
T PRK12748 218 -----PQGRVGEPVDAARLIAFLVSEEAKW--ITGQVIHSEGG 253 (256)
T ss_pred -----CCCCCcCHHHHHHHHHHHhCccccc--ccCCEEEecCC
Confidence 1123456899999999888753221 11338888765
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=153.08 Aligned_cols=219 Identities=17% Similarity=0.178 Sum_probs=146.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
|.+|+++||||+|+||+++++.|+++| ++|++..++ ........+. .+..+..+.+|++|.+++..+++
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G---~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDG---FKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKA 77 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcC---CEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 677899999999999999999999999 788775443 2222222222 23345667899999988766554
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.++++|+||||||..... ...+.++..+++|+.+++ .+.+. +.+.+.+++|++||.....+..
T Consensus 78 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------- 148 (246)
T PRK12938 78 EVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLF-NVTKQVIDGMVERGWGRIINISSVNGQKGQF-------- 148 (246)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCeEEEEEechhccCCCC--------
Confidence 357899999999975421 123345678899999975 54444 4456677999999975543322
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
....|+.+|.+.+.+++.+.. ++.+++|+.+.++.... ....+..... ... ....+..
T Consensus 149 --~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~-----~~~~~~~~~~-~~~-------~~~~~~~ 213 (246)
T PRK12938 149 --GQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA-----IRPDVLEKIV-ATI-------PVRRLGS 213 (246)
T ss_pred --CChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhh-----cChHHHHHHH-hcC-------CccCCcC
Confidence 267899999999888776543 46789999887654221 1112222221 111 2234677
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
++|+++++.+++..... ...+.++.+.++
T Consensus 214 ~~~v~~~~~~l~~~~~~--~~~g~~~~~~~g 242 (246)
T PRK12938 214 PDEIGSIVAWLASEESG--FSTGADFSLNGG 242 (246)
T ss_pred HHHHHHHHHHHcCcccC--CccCcEEEECCc
Confidence 99999999998865321 122337777765
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-20 Score=155.90 Aligned_cols=220 Identities=13% Similarity=0.040 Sum_probs=148.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
+++++|||||+|+||+++++.|+++| ++|++++|+.+..+.+.+++ +..+..+.+|++|++++.++++ .+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG---AQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 89999999876555544332 3456678999999998766654 45
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|++|||||...... ..+.++..+++|+.+++ .+++++.. .+ .+++|++||....-... +
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~--------~ 155 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVF-LTAQAAAKAMVKQGQGGVIINTASMSGHIINV--------P 155 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHH-HHHHHHHHHHHhcCCCcEEEEECcHHhcCCCC--------C
Confidence 78999999999764322 22345677899999996 77666543 22 24799999865431110 0
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
.....|+.+|.+++.+.+.++. ++..++|+.+-.+... ... .+... .... .....+..+
T Consensus 156 ~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~-----~~~-~~~~~-~~~~-------~~~~r~~~p 221 (253)
T PRK05867 156 QQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVE-----PYT-EYQPL-WEPK-------IPLGRLGRP 221 (253)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccc-----cch-HHHHH-HHhc-------CCCCCCcCH
Confidence 1246899999999999987754 3456777776443211 011 11111 1111 122357889
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+|+++++++...... ..+.++.+.+|.
T Consensus 222 ~~va~~~~~L~s~~~~~--~tG~~i~vdgG~ 250 (253)
T PRK05867 222 EELAGLYLYLASEASSY--MTGSDIVIDGGY 250 (253)
T ss_pred HHHHHHHHHHcCcccCC--cCCCeEEECCCc
Confidence 99999999999753211 113378887764
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=164.90 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=125.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
.+++++||||+|+||.++++.|+++| ++|++++|+.++...+...+ +..+.++++|++|.++++.+++. .
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRG---WHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999 89999999866554444333 23577889999999988776654 2
Q ss_pred CCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhhh----cc--CCeEEEeeccccccCC-CC-----
Q 022280 75 GQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFTE----NK--ENLLIHLSTDQVYEGV-KS----- 137 (300)
Q Consensus 75 ~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~--~~~~v~~SS~~~~~~~-~~----- 137 (300)
+++|+|||+||+... ..+.+.++..+++|+.|++ .+++++.. .+ .+|||++||...+... ..
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~ 160 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHF-LLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIP 160 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHH-HHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCC
Confidence 469999999997532 1133456788999999996 76665543 33 3599999997764321 00
Q ss_pred -CCC------------------CCCCCCCCChhHHHHHHHHHHHHHHc--------CCceeEeeeeeeCCC
Q 022280 138 -FYK------------------EEDEIAPVNVYGKSKVAAEKFIYEKC--------SNFAILRSSIIYGPQ 181 (300)
Q Consensus 138 -~~~------------------E~~~~~p~~~Y~~sK~~~e~~~~~~~--------~~~~ilR~~~v~G~~ 181 (300)
+.+ +..+..|...|+.||.+.+.+.+.++ ..+..+|||.|++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 161 APADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred CccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 001 11234567899999998876655443 245779999998643
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=155.11 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=150.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
.+++++||||+|+||.+++++|+++| ++|+++.|+.+........+ +.++.++++|++|.++++.++++ +
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G---~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAG---ATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999 88999988876554443332 34577889999999987776653 5
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+|||+||..... ...+.+...+++|+.+++ .+.+.+. +.+.++||++||.....+..
T Consensus 86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 154 (265)
T PRK07097 86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPF-IVSKAVIPSMIKKGHGKIINICSMMSELGRE---------- 154 (265)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHhcCCcEEEEEcCccccCCCC----------
Confidence 6799999999986532 223345677899999886 5555543 45667999999965432222
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCC---CCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVP---KSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
+...|+.+|.+++.+++.++. ++..++|+.+..+....... ......+..... .. .....+.
T Consensus 155 ~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~ 226 (265)
T PRK07097 155 TVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFII-AK-------TPAARWG 226 (265)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHH-hc-------CCccCCc
Confidence 267899999999999987754 45778999887764211000 000001111111 10 1123467
Q ss_pred eHHHHHHHHHHHHhccc--cccccccceeeecCCC
Q 022280 217 YVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPD 249 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~ 249 (300)
.++|++..+.+++.... ..|+ ++.+.++.
T Consensus 227 ~~~dva~~~~~l~~~~~~~~~g~----~~~~~gg~ 257 (265)
T PRK07097 227 DPEDLAGPAVFLASDASNFVNGH----ILYVDGGI 257 (265)
T ss_pred CHHHHHHHHHHHhCcccCCCCCC----EEEECCCc
Confidence 89999999999997632 2233 67776654
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-20 Score=153.41 Aligned_cols=214 Identities=18% Similarity=0.150 Sum_probs=144.9
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-Cchhhhhh---cCCCceeEEEeecCCchhHHHHHHh----cCCC
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK----FGQP 77 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~----~~~~ 77 (300)
+||||++|+||+++++.|+++| ++|+++.|+. +....+.. ..+..+.++.+|++|.+++..+++. ++++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEG---AKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPI 77 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 5899999999999999999999 8999998875 22222222 2233567789999999987776653 4679
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+|||+||..... ...+.++..+++|+.+++ .+++.+.. .+.++++++||...+...+. ..
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~~----------~~ 146 (239)
T TIGR01830 78 DILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVF-NLTQAVLRIMIKQRSGRIINISSVVGLMGNAG----------QA 146 (239)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCeEEEEECCccccCCCCC----------Cc
Confidence 9999999975421 123456778899999996 88777764 45569999999654333222 56
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.+|.+.+.+++.+. .++.++||+.+.++... . .......... ...+ ...+.+++|++
T Consensus 147 ~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~-~----~~~~~~~~~~-~~~~-------~~~~~~~~~~a 213 (239)
T TIGR01830 147 NYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTD-K----LSEKVKKKIL-SQIP-------LGRFGTPEEVA 213 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhh-h----cChHHHHHHH-hcCC-------cCCCcCHHHHH
Confidence 89999999988776653 35677888877554211 1 1111111111 1111 22467899999
Q ss_pred HHHHHHHhccccccccccceeeecCC
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
++++.++..... ...+++||++++
T Consensus 214 ~~~~~~~~~~~~--~~~g~~~~~~~g 237 (239)
T TIGR01830 214 NAVAFLASDEAS--YITGQVIHVDGG 237 (239)
T ss_pred HHHHHHhCcccC--CcCCCEEEeCCC
Confidence 999988855322 122448999765
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-20 Score=156.05 Aligned_cols=225 Identities=17% Similarity=0.166 Sum_probs=152.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCce-eeecCCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHHh---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATHHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK--- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~-v~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~--- 73 (300)
|++++++||||+|+||+.+++.|+++| ++ |++++|+.++...... ..+..+.++.+|+++++++.++++.
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G---~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERG---AAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCC---CCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999 77 9999988654443322 2244566789999999887766653
Q ss_pred -cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCC
Q 022280 74 -FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 74 -~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
++++|+|||+||...... ..+.++..+++|+.+++ ++++++.+ .+ .+++|++||...+++...
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~------ 153 (260)
T PRK06198 81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPF-FLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPF------ 153 (260)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCCEEEEECCcccccCCCC------
Confidence 468999999999754221 22234567899999986 77766643 22 358999999888766543
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCC--CCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPV--PKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.+|.+.|.+.+.++. +++.++|+.+.++...... .......+..... .. .....
T Consensus 154 ----~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~ 221 (260)
T PRK06198 154 ----LAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAA-AT-------QPFGR 221 (260)
T ss_pred ----cchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHh-cc-------CCccC
Confidence 67899999999999887653 3466888888776431100 0001112222111 11 12345
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++++|+++++.+++..... ...++++++.++.
T Consensus 222 ~~~~~~~a~~~~~l~~~~~~--~~~G~~~~~~~~~ 254 (260)
T PRK06198 222 LLDPDEVARAVAFLLSDESG--LMTGSVIDFDQSV 254 (260)
T ss_pred CcCHHHHHHHHHHHcChhhC--CccCceEeECCcc
Confidence 78999999999999875422 1223477777653
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=152.56 Aligned_cols=220 Identities=13% Similarity=0.087 Sum_probs=144.5
Q ss_pred CCCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|++|+++||||+ +.||++++++|+++| ++|++.+|+. +.....+++ ...+.++++|++|+++++++++ +
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G---~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQG---ATVIYTYQND-RMKKSLQKLVDEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCC---CEEEEecCch-HHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 356899999999 799999999999999 8999998873 332222222 3456678999999998766554 4
Q ss_pred cCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
++++|++|||||.... ....+.++..+++|+.+.+ .+.+.+... +.+++|++||.....+.+.
T Consensus 81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~-~l~~~~~~~~~~~g~Iv~iss~~~~~~~~~------ 153 (252)
T PRK06079 81 VGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLI-AVAKYARPLLNPGASIVTLTYFGSERAIPN------ 153 (252)
T ss_pred hCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHH-HHHHHHHHhcccCceEEEEeccCccccCCc------
Confidence 5789999999997532 1123345678899999986 666555431 2358999999765433222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+.+.+.+.++. ++..+.|+.|-.+.... .. . ....... ..... ....+.
T Consensus 154 ----~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~-~~-~-~~~~~~~-~~~~~-------p~~r~~ 218 (252)
T PRK06079 154 ----YNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTG-IK-G-HKDLLKE-SDSRT-------VDGVGV 218 (252)
T ss_pred ----chhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccc-CC-C-hHHHHHH-HHhcC-------cccCCC
Confidence 56899999999999987654 34567777664432110 00 0 1111111 11111 123578
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
.++|+++++.+++...... ..+.++.+.++
T Consensus 219 ~pedva~~~~~l~s~~~~~--itG~~i~vdgg 248 (252)
T PRK06079 219 TIEEVGNTAAFLLSDLSTG--VTGDIIYVDKG 248 (252)
T ss_pred CHHHHHHHHHHHhCccccc--ccccEEEeCCc
Confidence 8999999999999753211 11236666665
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-20 Score=154.19 Aligned_cols=220 Identities=20% Similarity=0.216 Sum_probs=146.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
.++++|||||+|+||++++++|+++| ++|++.+++... ........+..+..+++|++|.+++..+++ ++++
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G---~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAG---CDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999 889887765321 111122234456778999999888766654 3578
Q ss_pred CCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 77 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+|++|||||..... ...++++..+++|+.+++ .+++++.. .+ .+++|++||...+.+...
T Consensus 86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 154 (253)
T PRK08993 86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVF-FMSQAAAKHFIAQGNGGKIINIASMLSFQGGIR---------- 154 (253)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhCCCCeEEEEECchhhccCCCC----------
Confidence 99999999975432 223457788999999996 77666543 22 258999999887765443
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.+|.+.+.+.+.++. ++..++|+.+--+......+ ......... . .+ +...+..++|
T Consensus 155 ~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~---~~~~~~~~~-~--~~-----p~~r~~~p~e 223 (253)
T PRK08993 155 VPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRA---DEQRSAEIL-D--RI-----PAGRWGLPSD 223 (253)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhcc---chHHHHHHH-h--cC-----CCCCCcCHHH
Confidence 46899999999998887654 35667777775432110000 001111111 1 11 1235778999
Q ss_pred HHHHHHHHHhccccccccccceeeecCC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
+++.+.+++...... ..+.++.+.+|
T Consensus 224 va~~~~~l~s~~~~~--~~G~~~~~dgg 249 (253)
T PRK08993 224 LMGPVVFLASSASDY--INGYTIAVDGG 249 (253)
T ss_pred HHHHHHHHhCccccC--ccCcEEEECCC
Confidence 999999999764221 11236666554
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-20 Score=155.94 Aligned_cols=222 Identities=18% Similarity=0.180 Sum_probs=147.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
+++++|||||+|+||.++++.|+++| ++|++++|+++........ .+..+.++.+|+++.+++..+++. +
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAG---ANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999 8999999986554433222 234556789999998887766654 4
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhc---cCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTEN---KENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+++|+|||+|+..... ...+.++..+++|+.+++ ++++++... ..++||++||...+.+...
T Consensus 85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~l~~~~~~~l~~~~g~iv~iss~~~~~~~~~---------- 153 (264)
T PRK07576 85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTF-NVLKAAYPLLRRPGASIIQISAPQAFVPMPM---------- 153 (264)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCEEEEECChhhccCCCC----------
Confidence 6799999999854321 123345677899999996 777766541 2259999999776544333
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.+|.+.+.+++.+.. ++..++|+.+.+.... ....+........... ...+.+..++|
T Consensus 154 ~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~~~d 223 (264)
T PRK07576 154 QAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGM---ARLAPSPELQAAVAQS-------VPLKRNGTKQD 223 (264)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHH---hhcccCHHHHHHHHhc-------CCCCCCCCHHH
Confidence 67899999999999987654 3466788776542210 0000101111111111 12345778999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++++++++++.... ...+..+.+.++.
T Consensus 224 va~~~~~l~~~~~~--~~~G~~~~~~gg~ 250 (264)
T PRK07576 224 IANAALFLASDMAS--YITGVVLPVDGGW 250 (264)
T ss_pred HHHHHHHHcChhhc--CccCCEEEECCCc
Confidence 99999999975321 1112256666654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-20 Score=158.88 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=137.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.+++++||||+|+||.++++.|+++| ++|++++|+.+..+.+.+.+ +..+.++++|++|.+++..+++ .+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G---~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRG---ATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999 89999999866554443322 3456678999999998777665 46
Q ss_pred CCCCEEEEcccccCcccc------ccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccC-CCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRVC------ENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEG-VKSFYKEED 143 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~------~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~-~~~~~~E~~ 143 (300)
+++|+||||||....... ....+..+++|+.|++ .+++++ ++.+.+++|++||..++.. .+
T Consensus 116 g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~p------- 187 (293)
T PRK05866 116 GGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPL-RLIRGLAPGMLERGDGHIINVATWGVLSEASP------- 187 (293)
T ss_pred CCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcEEEEECChhhcCCCCC-------
Confidence 789999999997643221 1234567899999986 655544 4566779999999766542 11
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
....|+.||.+.+.+++.++. ++.+++|+.+-.+... .... .. ....+
T Consensus 188 ---~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~-----------------~~~~--~~---~~~~~ 242 (293)
T PRK05866 188 ---LFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIA-----------------PTKA--YD---GLPAL 242 (293)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCcccc-----------------cccc--cc---CCCCC
Confidence 256899999999998877643 3455666655332110 0000 00 01236
Q ss_pred eHHHHHHHHHHHHhc
Q 022280 217 YVRDVVKIILALTNR 231 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~ 231 (300)
.++++|+.++.++++
T Consensus 243 ~pe~vA~~~~~~~~~ 257 (293)
T PRK05866 243 TADEAAEWMVTAART 257 (293)
T ss_pred CHHHHHHHHHHHHhc
Confidence 799999999999987
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=153.01 Aligned_cols=221 Identities=11% Similarity=0.107 Sum_probs=148.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----cC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
+|+++||||+|+||+++++.|+++| ++|++++|+.+....+.+. .+..+.++++|++|+++++++++. ++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEG---ANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999 8999999986554444332 235677899999999887765543 57
Q ss_pred CCCEEEEcccccCc----cccccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVP----RVCENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 76 ~~d~vih~a~~~~~----~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++|+|||+||.... ..+.+.++..+++|+.+++ ++++++.+ .+ .+++|++||...+.+...
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~--------- 147 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTF-YCSQAVGKYWIEKGIKGNIINMVATYAWDAGPG--------- 147 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHH-HHHHHHHHHHHhcCCCEEEEEEcChhhccCCCC---------
Confidence 89999999986432 1233345778999999996 88777743 22 358999999765543322
Q ss_pred CCChhHHHHHHHHHHHHHHcC--------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS--------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~--------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+.+.+.+.++. ++..++|+.+..+....... .......... +.. ....+..+
T Consensus 148 -~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~--~~~~~~~~~~-~~~-------~~~~~~~~ 216 (252)
T PRK07677 148 -VIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLW--ESEEAAKRTI-QSV-------PLGRLGTP 216 (252)
T ss_pred -CcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeeccccccccccccc--CCHHHHHHHh-ccC-------CCCCCCCH
Confidence 56799999999998876432 45668888776432110000 0111222211 111 12346789
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+++++.+++..... ...+.++.+.++.
T Consensus 217 ~~va~~~~~l~~~~~~--~~~g~~~~~~gg~ 245 (252)
T PRK07677 217 EEIAGLAYFLLSDEAA--YINGTCITMDGGQ 245 (252)
T ss_pred HHHHHHHHHHcCcccc--ccCCCEEEECCCe
Confidence 9999999998865321 1123367777664
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=154.34 Aligned_cols=221 Identities=17% Similarity=0.222 Sum_probs=147.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~ 76 (300)
|.++++|||||+|+||+++++.|+++| ++|++.++++.... ...+.++.+|++|+++++.+++. +++
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G---~~v~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 77 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANG---ANVVNADIHGGDGQ------HENYQFVPTDVSSAEEVNHTVAEIIEKFGR 77 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCccccc------cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 346899999999999999999999999 89999988765432 13566789999999987766554 478
Q ss_pred CCEEEEcccccCcc-------------ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCC
Q 022280 77 PDVVVNCAALSVPR-------------VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFY 139 (300)
Q Consensus 77 ~d~vih~a~~~~~~-------------~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~ 139 (300)
+|+|||+||..... ...+.++..+++|+.+++ .+++++.. .+.++||++||...+.+...
T Consensus 78 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-- 154 (266)
T PRK06171 78 IDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVF-LMSQAVARQMVKQHDGVIVNMSSEAGLEGSEG-- 154 (266)
T ss_pred CCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHH-HHHHHHHHHHHhcCCcEEEEEccccccCCCCC--
Confidence 99999999975321 123345678899999996 77766653 34468999999877654433
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCC-CCC-------CCchHHHHHHHHhcCCc
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTIS-PVP-------KSLPIQWIDSVLSKGEK 204 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~-~~~-------~~~~~~~~~~~~~~~~~ 204 (300)
...|+.+|.+.+.+++.++. ++.+++|+.+--..-.. ... ......+ .+.......
T Consensus 155 --------~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 225 (266)
T PRK06171 155 --------QSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQL-RAGYTKTST 225 (266)
T ss_pred --------CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHH-Hhhhccccc
Confidence 67899999999999887654 45667777663111000 000 0000011 111100001
Q ss_pred eeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 205 VEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 205 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.....+..++|++.++.+++...... ..+.++++.+|.
T Consensus 226 -----~p~~r~~~~~eva~~~~fl~s~~~~~--itG~~i~vdgg~ 263 (266)
T PRK06171 226 -----IPLGRSGKLSEVADLVCYLLSDRASY--ITGVTTNIAGGK 263 (266)
T ss_pred -----ccCCCCCCHHHhhhheeeeecccccc--ceeeEEEecCcc
Confidence 12345778999999999998753221 113377777653
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=153.43 Aligned_cols=226 Identities=12% Similarity=0.094 Sum_probs=147.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----C-CceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----P-HSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
++++++||||+|+||+++++.|+++| ++|++++|++++.....+.+ + ..+..+.+|++|.++++++++
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAG---ASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999 89999999876554433322 2 356678999999998766554
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHH----hhhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLS----SFTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.++++|+||||||...... ..+.++..+++|+.+.+ .+.+ .+++.+.++||++||...+.+.+.
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 155 (265)
T PRK07062 84 RFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVI-NPTRAFLPLLRASAAASIVCVNSLLALQPEPH------- 155 (265)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhccCCcEEEEeccccccCCCCC-------
Confidence 4578999999999754221 22345677889988875 4444 444455679999999877655433
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCC-----CCCchHHHHHHHHhcCCceeeccCcc
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPV-----PKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.+|.+.+.+.+.++. ++..++|+.+-.+...... +......+..... ... +-+.
T Consensus 156 ---~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~p~ 226 (265)
T PRK07062 156 ---MVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALA-RKK-----GIPL 226 (265)
T ss_pred ---chHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHh-hcC-----CCCc
Confidence 56899999999988876543 4566777776543210000 0000001111100 000 1123
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
..+..++|+++++.+++..... -..+.++.+.+|.
T Consensus 227 ~r~~~p~~va~~~~~L~s~~~~--~~tG~~i~vdgg~ 261 (265)
T PRK07062 227 GRLGRPDEAARALFFLASPLSS--YTTGSHIDVSGGF 261 (265)
T ss_pred CCCCCHHHHHHHHHHHhCchhc--ccccceEEEcCce
Confidence 4577899999999999875221 1123377777763
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=9e-20 Score=169.49 Aligned_cols=222 Identities=15% Similarity=0.160 Sum_probs=155.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
.++++|||||+|+||.++++.|+++| ++|++++|+.+....+.+..+.....+.+|++|+++++.+++ .++++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAG---DRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 36899999999999999999999999 899999998776666665555566678999999998766664 45789
Q ss_pred CEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 78 DVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 78 d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
|++|||||.... ..+.+.++..+++|+.+++ .+.+.+.. .+.++||++||...+.+... ...
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~~ 413 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAF-ACARAAARLMSQGGVIVNLGSIASLLALPP----------RNA 413 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHH-HHHHHHHHHhccCCEEEEECchhhcCCCCC----------Cch
Confidence 999999997532 1223456788999999996 77777655 23469999999877655433 678
Q ss_pred hHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHH
Q 022280 151 YGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 223 (300)
|+.+|...+.+++.++. ++..+.|+.+..+....... . ...... .+.+.. ....+..++|+|+
T Consensus 414 Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~-~-~~~~~~-~~~~~~-------~~~~~~~~~dia~ 483 (520)
T PRK06484 414 YCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKA-S-GRADFD-SIRRRI-------PLGRLGDPEEVAE 483 (520)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhcc-c-cHHHHH-HHHhcC-------CCCCCcCHHHHHH
Confidence 99999999998887653 45678888776553211000 0 000111 111111 1234678999999
Q ss_pred HHHHHHhccccccccccceeeecCCC
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++++++..... ...++++.+.+|.
T Consensus 484 ~~~~l~s~~~~--~~~G~~i~vdgg~ 507 (520)
T PRK06484 484 AIAFLASPAAS--YVNGATLTVDGGW 507 (520)
T ss_pred HHHHHhCcccc--CccCcEEEECCCc
Confidence 99999975321 1123378887764
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-20 Score=158.93 Aligned_cols=200 Identities=14% Similarity=0.143 Sum_probs=140.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----cC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
+++++||||+|+||+++++.|+++| ++|+++.|+.+....+.+. .+..+.++.+|++|+++++.+++. ++
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G---~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRG---ARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999 8999999987665544432 244566789999999987776643 47
Q ss_pred CCCEEEEcccccCcccc----ccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRVC----ENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|++|||||....... .+.++..+++|+.+++ .+.+++ ++.+.+++|++||...+.+.+.
T Consensus 84 ~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~-~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p~---------- 152 (330)
T PRK06139 84 RIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYM-RDAHAALPIFKKQGHGIFINMISLGGFAAQPY---------- 152 (330)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHHcCCCEEEEEcChhhcCCCCC----------
Confidence 89999999997644322 2234567999999986 655543 4455579999999887655433
Q ss_pred CChhHHHHHHHHHHHHHHcC--------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS--------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~--------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+.+.+.+.+.. +++.+.|+.+..|...... .+. +... .....+.+++
T Consensus 153 ~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~------~~~------~~~~----~~~~~~~~pe 216 (330)
T PRK06139 153 AAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGA------NYT------GRRL----TPPPPVYDPR 216 (330)
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccc------ccc------cccc----cCCCCCCCHH
Confidence 57899999988877765533 3455666666554321000 000 0000 0112357899
Q ss_pred HHHHHHHHHHhcc
Q 022280 220 DVVKIILALTNRW 232 (300)
Q Consensus 220 D~a~~~~~~~~~~ 232 (300)
|+|++++.+++++
T Consensus 217 ~vA~~il~~~~~~ 229 (330)
T PRK06139 217 RVAKAVVRLADRP 229 (330)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999874
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-20 Score=158.26 Aligned_cols=208 Identities=16% Similarity=0.115 Sum_probs=145.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC--CceeEEEeecCCchhHHHHHHh----cC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
.++++|||||+|+||.++++.|+++| ++|++++|+.+....+.+.++ ..+..+.+|++|.+++..++++ ++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARG---AKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999 899999998766665555443 2344567999999987666543 57
Q ss_pred CCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 76 ~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
++|+||||||..... .+.+.++..+++|+.+++ .+++.+.. .+.++||++||...+.+.+. .
T Consensus 85 ~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~-~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~ 153 (296)
T PRK05872 85 GIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVF-HTVRATLPALIERRGYVLQVSSLAAFAAAPG----------M 153 (296)
T ss_pred CCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCEEEEEeCHhhcCCCCC----------c
Confidence 899999999976432 122345678899999996 77776653 23358999999887766544 6
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.||.+++.+.+.+.. .+.++.|+.+..+....... . . ....... ...+ .....++.++|+
T Consensus 154 ~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~-~-~-~~~~~~~-~~~~-----~p~~~~~~~~~v 224 (296)
T PRK05872 154 AAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADA-D-L-PAFRELR-ARLP-----WPLRRTTSVEKC 224 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccc-c-c-hhHHHHH-hhCC-----CcccCCCCHHHH
Confidence 7899999999999886643 45667777765442111000 0 0 1111111 1111 112356789999
Q ss_pred HHHHHHHHhcc
Q 022280 222 VKIILALTNRW 232 (300)
Q Consensus 222 a~~~~~~~~~~ 232 (300)
++++.++++..
T Consensus 225 a~~i~~~~~~~ 235 (296)
T PRK05872 225 AAAFVDGIERR 235 (296)
T ss_pred HHHHHHHHhcC
Confidence 99999999873
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=151.96 Aligned_cols=207 Identities=15% Similarity=0.129 Sum_probs=139.7
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhhhcC----CC-ceeEEEeecCCchhHHHHHH----hc
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDAL----PH-SFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~~~~----~~-~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
+++||||+|+||+++++.|+++| ++|++++|+ .+....+.+.+ .. .+..+++|++|.+++.++++ .+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQG---AKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAM 77 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999999 899999987 44444443322 11 23457899999998766554 45
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccch---HHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSL---VNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~---~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+++|+|||+||...... ..+.++..+++|+.+.+ ..+++.+++.+.++||++||...+.+...
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~---------- 147 (251)
T PRK07069 78 GGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEPD---------- 147 (251)
T ss_pred CCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCCC----------
Confidence 78999999999764321 12234567889988442 26677777777789999999888766544
Q ss_pred CChhHHHHHHHHHHHHHHcC---------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS---------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~---------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.+|.+.+.+++.++. ++..++|+.+.++................... ++ .+...+.++
T Consensus 148 ~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~ 219 (251)
T PRK07069 148 YTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLA-RG-------VPLGRLGEP 219 (251)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHh-cc-------CCCCCCcCH
Confidence 56899999999998886532 34667788777664211000000000111111 11 122346789
Q ss_pred HHHHHHHHHHHhcc
Q 022280 219 RDVVKIILALTNRW 232 (300)
Q Consensus 219 ~D~a~~~~~~~~~~ 232 (300)
+|+++++++++..+
T Consensus 220 ~~va~~~~~l~~~~ 233 (251)
T PRK07069 220 DDVAHAVLYLASDE 233 (251)
T ss_pred HHHHHHHHHHcCcc
Confidence 99999999987653
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.9e-20 Score=152.48 Aligned_cols=192 Identities=16% Similarity=0.120 Sum_probs=140.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~vi 81 (300)
|++++||||||+||++++++|+++| ++|++++|+++....+... ...+.++.+|++|.++++.+++.. ..+|.++
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G---~~V~~~~r~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i 76 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQG---WQVIACGRNQSVLDELHTQ-SANIFTLAFDVTDHPGTKAALSQLPFIPELWI 76 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHh-cCCCeEEEeeCCCHHHHHHHHHhcccCCCEEE
Confidence 4789999999999999999999999 8999999986655544433 245677899999999998888764 2589999
Q ss_pred EcccccCcc----ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHH
Q 022280 82 NCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSK 155 (300)
Q Consensus 82 h~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK 155 (300)
|+||..... ...+.++..+++|+.+++ ++++++... +.+++|++||.....+... ...|+.+|
T Consensus 77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~iv~isS~~~~~~~~~----------~~~Y~asK 145 (240)
T PRK06101 77 FNAGDCEYMDDGKVDATLMARVFNVNVLGVA-NCIEGIQPHLSCGHRVVIVGSIASELALPR----------AEAYGASK 145 (240)
T ss_pred EcCcccccCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCCeEEEEechhhccCCCC----------CchhhHHH
Confidence 999864321 122234578999999997 888887752 3358999998654322222 56899999
Q ss_pred HHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHH
Q 022280 156 VAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 156 ~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 228 (300)
.+++.+.+.++ .+++++||+.++++...... .. ....+.++|+++.++..
T Consensus 146 ~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~----------------~~-------~~~~~~~~~~a~~i~~~ 202 (240)
T PRK06101 146 AAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNT----------------FA-------MPMIITVEQASQEIRAQ 202 (240)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCC----------------CC-------CCcccCHHHHHHHHHHH
Confidence 99999887653 35688999999876421100 00 00136799999999999
Q ss_pred Hhcc
Q 022280 229 TNRW 232 (300)
Q Consensus 229 ~~~~ 232 (300)
++..
T Consensus 203 i~~~ 206 (240)
T PRK06101 203 LARG 206 (240)
T ss_pred HhcC
Confidence 9873
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=152.35 Aligned_cols=195 Identities=14% Similarity=0.116 Sum_probs=137.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhcC----CCceeEEEeecCCchhHHHHHHh---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDAL----PHSFVFFDVDLKSGSGFDAVALK--- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~--- 73 (300)
+.++|+||||+|+||++++++|+++|. ++|++++|++++ ...+.+.+ ...+.++.+|++|.+++.+.++.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg--~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAP--ARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCC--CeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 357899999999999999999999843 789999998765 44333322 23678899999998876555443
Q ss_pred cCCCCEEEEcccccCccc-cccCh---hhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV-CENDP---DSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~-~~~~~---~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
.+++|++||++|...... ...++ .+.+++|+.+++. .+++.+.+.+.++||++||...+.+..
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~~~---------- 154 (253)
T PRK07904 85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERVRR---------- 154 (253)
T ss_pred cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCCCC----------
Confidence 358999999999764321 11122 2468999998862 367777777778999999976543322
Q ss_pred CCChhHHHHHHHHHHHHHH-------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEK-------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~-------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
+...|+.||++...+.+.+ +.++.+++|+.+..+-.. .... ....+.++
T Consensus 155 ~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~-----------------~~~~-------~~~~~~~~ 210 (253)
T PRK07904 155 SNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSA-----------------HAKE-------APLTVDKE 210 (253)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhc-----------------cCCC-------CCCCCCHH
Confidence 2567999999998776554 346788999988753210 0000 01136799
Q ss_pred HHHHHHHHHHhcc
Q 022280 220 DVVKIILALTNRW 232 (300)
Q Consensus 220 D~a~~~~~~~~~~ 232 (300)
|+|+.++.+++++
T Consensus 211 ~~A~~i~~~~~~~ 223 (253)
T PRK07904 211 DVAKLAVTAVAKG 223 (253)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999873
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-20 Score=160.71 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=117.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHHh---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVALK--- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~--- 73 (300)
.+++|+||||+|+||++++++|+++| ++|++++|+.++.....+.+ +..+.++++|++|.+++..+++.
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G---~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKG---AHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999999999 89999999865443322211 23567789999999987776653
Q ss_pred -cCCCCEEEEcccccCcc--ccccChhhhhhcccccch---HHHHHhhhhccCCeEEEeeccccccCCCC---CCCCCCC
Q 022280 74 -FGQPDVVVNCAALSVPR--VCENDPDSAMSINVPSSL---VNWLSSFTENKENLLIHLSTDQVYEGVKS---FYKEEDE 144 (300)
Q Consensus 74 -~~~~d~vih~a~~~~~~--~~~~~~~~~~~~nv~~~~---~~l~~~~~~~~~~~~v~~SS~~~~~~~~~---~~~E~~~ 144 (300)
++++|+||||||..... ...+.++..+++|+.|++ ..+++.+++.+.++||++||...+..... ...++.+
T Consensus 92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~ 171 (306)
T PRK06197 92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQWERR 171 (306)
T ss_pred hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccccCcccC
Confidence 46899999999975432 223455778999999953 15666666666679999999765432111 1222223
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS 167 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~ 167 (300)
..+...|+.||.+.+.+.+.++.
T Consensus 172 ~~~~~~Y~~SK~a~~~~~~~la~ 194 (306)
T PRK06197 172 YNRVAAYGQSKLANLLFTYELQR 194 (306)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999998887654
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=152.57 Aligned_cols=193 Identities=14% Similarity=0.149 Sum_probs=139.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CCCceeEEEeecCCchhHHHHHHhc-CCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LPHSFVFFDVDLKSGSGFDAVALKF-GQP 77 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~-~~~ 77 (300)
||+++||||+|+||+++++.|+++| ++|++++|++++.....+. ...++.++++|++|.++++..++.. .++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG---ARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 5799999999999999999999999 8999999987654443322 2346788999999999888877653 257
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+|||+||...... +.+.+...+++|+.+++ .+++++.. .+.+++|++||.....+... ..
T Consensus 78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------~~ 146 (243)
T PRK07102 78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPI-ALLTLLANRFEARGSGTIVGISSVAGDRGRAS----------NY 146 (243)
T ss_pred CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHhCCCCEEEEEecccccCCCCC----------Cc
Confidence 99999998754321 22334567899999986 77666543 46679999999754333222 45
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.+|...+.+++.++. ++..++|+.+.++.... .. . .......++|++
T Consensus 147 ~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~-----------------~~---~---~~~~~~~~~~~a 203 (243)
T PRK07102 147 VYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAG-----------------LK---L---PGPLTAQPEEVA 203 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhc-----------------cC---C---CccccCCHHHHH
Confidence 799999999998877632 46778888887652110 00 0 011246799999
Q ss_pred HHHHHHHhcc
Q 022280 223 KIILALTNRW 232 (300)
Q Consensus 223 ~~~~~~~~~~ 232 (300)
+.++.+++++
T Consensus 204 ~~i~~~~~~~ 213 (243)
T PRK07102 204 KDIFRAIEKG 213 (243)
T ss_pred HHHHHHHhCC
Confidence 9999999873
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=150.95 Aligned_cols=222 Identities=16% Similarity=0.123 Sum_probs=145.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
.+++++||||+|+||+++++.|+++| ++|+++.|+.+ .....+ .....+.++.+|+++.+++..+++. +
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G---~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHG---ANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999 89999998753 222211 1234566789999999887666553 5
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccc-cCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVY-EGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~-~~~~~~~~E~~~~ 145 (300)
+++|+|||+||...... ..+.++..+++|+.+++ .+++.+.. .+.+++|++||.... .+..
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 150 (263)
T PRK08226 81 GRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVW-NVTKAVLPEMIARKDGRIVMMSSVTGDMVADP--------- 150 (263)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCcEEEEECcHHhcccCCC---------
Confidence 78999999999754322 12234567899999996 77776543 445689999986542 2221
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCC----CCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISP----VPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
....|+.+|.+.+.+++.++. ++..++|+.+.++-.... .+.. ......... .. .+...
T Consensus 151 -~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~-~~~~~~~~~-~~-------~p~~~ 220 (263)
T PRK08226 151 -GETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPED-PESVLTEMA-KA-------IPLRR 220 (263)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCC-cHHHHHHHh-cc-------CCCCC
Confidence 256899999999998887643 456788888876532100 0000 111111111 11 12335
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+..++|+++++.+++..... ...+.++-+.+|.
T Consensus 221 ~~~~~~va~~~~~l~~~~~~--~~~g~~i~~dgg~ 253 (263)
T PRK08226 221 LADPLEVGELAAFLASDESS--YLTGTQNVIDGGS 253 (263)
T ss_pred CCCHHHHHHHHHHHcCchhc--CCcCceEeECCCc
Confidence 67899999999998864321 1112266666653
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=142.08 Aligned_cols=280 Identities=19% Similarity=0.159 Sum_probs=203.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
.+|||||+-|.+|..++..|..+-.+ -.|+..+-..... .. -+.-.++..|+.|...++++.-.. ++|-+||.
T Consensus 45 PrvLITG~LGQLG~~~A~LLR~~yGs-~~VILSDI~KPp~-~V----~~~GPyIy~DILD~K~L~eIVVn~-RIdWL~Hf 117 (366)
T KOG2774|consen 45 PRVLITGSLGQLGRGLASLLRYMYGS-ECVILSDIVKPPA-NV----TDVGPYIYLDILDQKSLEEIVVNK-RIDWLVHF 117 (366)
T ss_pred CeEEEecchHHHhHHHHHHHHHHhCC-ccEehhhccCCch-hh----cccCCchhhhhhccccHHHhhccc-ccceeeeH
Confidence 58999999999999999999886433 3465554442221 11 123456889999999998887665 99999998
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC--CCCCCCCCCCCChhHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS--FYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~--~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
.+..+.. .+.+-....++|+.|.- |+++.+++.+. ++...|+++.||+... |-..-+...|.+.||.||.-+|-+
T Consensus 118 SALLSAv-GE~NVpLA~~VNI~GvH-Nil~vAa~~kL-~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSKVHAEL~ 194 (366)
T KOG2774|consen 118 SALLSAV-GETNVPLALQVNIRGVH-NILQVAAKHKL-KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSKVHAELL 194 (366)
T ss_pred HHHHHHh-cccCCceeeeecchhhh-HHHHHHHHcCe-eEeecccccccCCCCCCCCCCCeeeecCceeechhHHHHHHH
Confidence 7765432 24455567899999995 99999999988 7777899999999654 444455667899999999999876
Q ss_pred HHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCc-eeeccCcccCceeHHHHHHHHHHHHhcccccc
Q 022280 162 IYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK-VEFFHDECRCPVYVRDVVKIILALTNRWLSED 236 (300)
Q Consensus 162 ~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~ 236 (300)
-+.+ +..+..+|++.++.....+.............++.+++. ..+-++.+-.+.|.+|+.++++.++..++..
T Consensus 195 GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~~~~~~~~a~~~~- 273 (366)
T KOG2774|consen 195 GEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMASVIQLLAADSQS- 273 (366)
T ss_pred HHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHHHHHHHHHhCCHHH-
Confidence 6544 457788999998876655555555555555566655543 2233456677899999999999999886433
Q ss_pred ccccceeeecCCCccCHHHHHH----------hhcc------CCCCCccccChHHHHHhcCCCc-CCHHHHHHHHHh
Q 022280 237 KQMQLLLNVGGPDRVSRVQMAE----------VDRG------VQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLA 296 (300)
Q Consensus 237 ~~~~~i~ni~~~~~~s~~e~~~----------~~~~------~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~ 296 (300)
..+++||+.+ -..|-+|++. +.+. ..+.+.+.+|-+.+|++..|+- ..+-..+.-++.
T Consensus 274 -lkrr~ynvt~-~sftpee~~~~~~~~~p~~~i~y~~~srq~iad~wp~~~dds~ar~~wh~~h~~~l~~~i~~~i~ 348 (366)
T KOG2774|consen 274 -LKRRTYNVTG-FSFTPEEIADAIRRVMPGFEIDYDICTRQSIADSWPMSLDDSEARTEWHEKHSLHLLSIISTVVA 348 (366)
T ss_pred -hhhheeeece-eccCHHHHHHHHHhhCCCceeecccchhhhhhhhcccccCchhHhhHHHHhhhhhHHHHHHHHHH
Confidence 3367999966 5888899887 1111 1234567789999999999998 777666655553
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=153.34 Aligned_cols=199 Identities=17% Similarity=0.190 Sum_probs=138.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc--CCCceeEEEeecCCchhHHHHHHh---cCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA--LPHSFVFFDVDLKSGSGFDAVALK---FGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~---~~~ 76 (300)
.++++|||||+|+||+++++.|+++| ++|++++|+++....+... .+..+.++.+|++|++++..+++. +++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG---ARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999999 8999999986655444433 245677889999999987766553 468
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+|||+||...... ..+..+..+++|+.|+. .+++.+.+ .+.+++|++||...+.+... .
T Consensus 81 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----------~ 149 (263)
T PRK09072 81 INVLINNAGVNHFALLEDQDPEAIERLLALNLTAPM-QLTRALLPLLRAQPSAMVVNVGSTFGSIGYPG----------Y 149 (263)
T ss_pred CCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCCEEEEecChhhCcCCCC----------c
Confidence 999999999754321 12234577889999986 77776643 34468999998665433322 5
Q ss_pred ChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.+|.+.+.+++.++.+ ++.+.|+.+..+... .... .........+..++|+
T Consensus 150 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~---------~~~~---------~~~~~~~~~~~~~~~v 211 (263)
T PRK09072 150 ASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNS---------EAVQ---------ALNRALGNAMDDPEDV 211 (263)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchh---------hhcc---------cccccccCCCCCHHHH
Confidence 68999999998888776542 344555555332110 0000 0000011235789999
Q ss_pred HHHHHHHHhcc
Q 022280 222 VKIILALTNRW 232 (300)
Q Consensus 222 a~~~~~~~~~~ 232 (300)
|+++++++++.
T Consensus 212 a~~i~~~~~~~ 222 (263)
T PRK09072 212 AAAVLQAIEKE 222 (263)
T ss_pred HHHHHHHHhCC
Confidence 99999999974
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=150.12 Aligned_cols=219 Identities=17% Similarity=0.148 Sum_probs=141.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC-CCCchhhhhh---cCCCceeEEEeecCCchhHHHHHHh----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-STPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r-~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
|+|+||||||+|+||+++++.|+++| ++|+++.+ +++....... ..+.++.++++|+++.+++.++++.
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG---WSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSA 77 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHh
Confidence 36799999999999999999999999 88877654 4333333322 2234677899999999887666543
Q ss_pred cCCCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhh----cc---CCeEEEeecccc-ccCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTE----NK---ENLLIHLSTDQV-YEGVKSFYK 140 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~---~~~~v~~SS~~~-~~~~~~~~~ 140 (300)
++++|+|||+||..... ...+.++..+++|+.+++ .+++++.+ .+ -++||++||... ++....
T Consensus 78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~--- 153 (248)
T PRK06947 78 FGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAY-LCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNE--- 153 (248)
T ss_pred cCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHH-HHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCCC---
Confidence 46899999999975331 122234567899999986 66544332 11 236999999654 333211
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+++.+++.++ .+++++||+.+..+..... ..+ ..... ... . ....
T Consensus 154 -------~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~---~~~-~~~~~-~~~--~-----~~~~ 214 (248)
T PRK06947 154 -------YVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASG---GQP-GRAAR-LGA--Q-----TPLG 214 (248)
T ss_pred -------CcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCccccccccc---CCH-HHHHH-Hhh--c-----CCCC
Confidence 3579999999998876554 3578899999887642110 011 11111 100 0 0112
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
.+..++|+++.+++++..... ...+.++.+.++
T Consensus 215 ~~~~~e~va~~~~~l~~~~~~--~~~G~~~~~~gg 247 (248)
T PRK06947 215 RAGEADEVAETIVWLLSDAAS--YVTGALLDVGGG 247 (248)
T ss_pred CCcCHHHHHHHHHHHcCcccc--CcCCceEeeCCC
Confidence 356799999999999887532 112336666554
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=151.73 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=148.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
.+++++||||+|+||+++++.|+++| ++|++++|++++...+.+.+ +..+.++.+|++|.+++..+++.++++
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEG---CHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 45899999999999999999999999 89999999866554433322 345677899999999999998888899
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|++|||||..... ...+.++..+++|+.+.+ .+.+.+ .+.+.+++|++||.....+.. ...
T Consensus 83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~g~iv~iss~~~~~~~~----------~~~ 151 (259)
T PRK06125 83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYI-DLTRLAYPRMKARGSGVIVNVIGAAGENPDA----------DYI 151 (259)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCcEEEEecCccccCCCC----------Cch
Confidence 9999999975422 123345677899999985 655554 444446899999865432221 256
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCC----CCc-hHHHHHHHHhcCCceeeccCcccCcee
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVP----KSL-PIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
.|+.+|.+.+.+.+.++. ++..+.|+.+..+......+ ..+ ......... . ......+..
T Consensus 152 ~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~ 223 (259)
T PRK06125 152 CGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELL-A-------GLPLGRPAT 223 (259)
T ss_pred HhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHh-c-------cCCcCCCcC
Confidence 789999999998887643 45667776665432000000 000 000000000 0 012235778
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++|+++++++++...... ..+.++.+.+|.
T Consensus 224 ~~~va~~~~~l~~~~~~~--~~G~~i~vdgg~ 253 (259)
T PRK06125 224 PEEVADLVAFLASPRSGY--TSGTVVTVDGGI 253 (259)
T ss_pred HHHHHHHHHHHcCchhcc--ccCceEEecCCe
Confidence 999999999998653211 113377777664
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=152.12 Aligned_cols=193 Identities=15% Similarity=0.122 Sum_probs=138.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHH----h
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
+++++||||+|+||++++++|+++| ++|++.+|+++....+...+ +..+.++.+|+++++++..+++ .
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG---RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999 89999999876554443322 2356778999999988766555 3
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+|||+||+..... ..+.++..+++|+.+++ .+++.+ ++.+.+++|++||.....+..
T Consensus 79 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--------- 148 (248)
T PRK08251 79 LGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAAL-AQCEAAMEIFREQGSGHLVLISSVSAVRGLP--------- 148 (248)
T ss_pred cCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCeEEEEeccccccCCC---------
Confidence 568999999999764322 12234567899999986 666655 345677999999966543321
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
.+...|+.||.+++.+.+.+.. +++.++|+.+.++.... .+. ....+..
T Consensus 149 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~-----------------~~~-------~~~~~~~ 204 (248)
T PRK08251 149 GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK-----------------AKS-------TPFMVDT 204 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc-----------------ccc-------CCccCCH
Confidence 1256899999999988876543 45667777775442110 000 1124779
Q ss_pred HHHHHHHHHHHhcc
Q 022280 219 RDVVKIILALTNRW 232 (300)
Q Consensus 219 ~D~a~~~~~~~~~~ 232 (300)
+|.|++++.++++.
T Consensus 205 ~~~a~~i~~~~~~~ 218 (248)
T PRK08251 205 ETGVKALVKAIEKE 218 (248)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999873
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-20 Score=152.77 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=118.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh----hhcCCCc-eeEEEeecCCchhHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL----LDALPHS-FVFFDVDLKSGSGFDAVA---- 71 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~----~~~~~~~-~~~~~~D~~~~~~~~~~~---- 71 (300)
|.+|.|+|||||++||.+++.+|+++| ..++.+.|+.++++.. .+..+.. +..+++|++|.+++...+
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G---~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~ 86 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRG---AKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI 86 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCC---CceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH
Confidence 357899999999999999999999999 7666677765555443 3334444 778999999999866554
Q ss_pred HhcCCCCEEEEcccccCcccc----ccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 72 LKFGQPDVVVNCAALSVPRVC----ENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 72 ~~~~~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.+++++|++|||||+...... ..+....+++|+.|+.. .++..+++.+-++||.+||++.+-+.+-
T Consensus 87 ~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~------- 159 (282)
T KOG1205|consen 87 RHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPF------- 159 (282)
T ss_pred HhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCc-------
Confidence 678999999999998763221 12334689999999962 4455566677679999999887766543
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCC
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCSN 168 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~~ 168 (300)
...|.+||.+++.+...+..|
T Consensus 160 ---~~~Y~ASK~Al~~f~etLR~E 180 (282)
T KOG1205|consen 160 ---RSIYSASKHALEGFFETLRQE 180 (282)
T ss_pred ---ccccchHHHHHHHHHHHHHHH
Confidence 458999999999999877664
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=151.99 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=141.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-Cchhhhhh----cCCCceeEEEeecCCchhHHHHHHh--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLD----ALPHSFVFFDVDLKSGSGFDAVALK-- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~-- 73 (300)
|++|++|||||+++||++++++|+++| ++|++..|+. +....... ..+..+.++.+|++|+++++.+++.
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSG---VNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999 8888876643 33332222 2234577889999999987766654
Q ss_pred --cCCCCEEEEcccccCc------c----ccccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccCCCC
Q 022280 74 --FGQPDVVVNCAALSVP------R----VCENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEGVKS 137 (300)
Q Consensus 74 --~~~~d~vih~a~~~~~------~----~~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~ 137 (300)
++++|++|||||.... . ...+.....+++|+.+.+ .+ +..+++.+.++||++||.....+.+.
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~ 161 (260)
T PRK08416 83 EDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFV-VGAQEAAKRMEKVGGGSIISLSSTGNLVYIEN 161 (260)
T ss_pred HhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHH-HHHHHHHHhhhccCCEEEEEEeccccccCCCC
Confidence 5789999999986421 0 112234567888888775 43 33344445569999999765433322
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC
Q 022280 138 FYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD 210 (300)
Q Consensus 138 ~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
...|+.||.+++.+++.++.+ +..+.|+.+--+.. ...+. . .... ...... .
T Consensus 162 ----------~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~-~~~~~-~-~~~~-~~~~~~-------~ 220 (260)
T PRK08416 162 ----------YAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDAL-KAFTN-Y-EEVK-AKTEEL-------S 220 (260)
T ss_pred ----------cccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhh-hhccC-C-HHHH-HHHHhc-------C
Confidence 568999999999999876553 45566665532210 00000 0 0111 111011 1
Q ss_pred cccCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 211 ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 211 ~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
....+..++|++.++++++...... ..+..+.+.++.
T Consensus 221 ~~~r~~~p~~va~~~~~l~~~~~~~--~~G~~i~vdgg~ 257 (260)
T PRK08416 221 PLNRMGQPEDLAGACLFLCSEKASW--LTGQTIVVDGGT 257 (260)
T ss_pred CCCCCCCHHHHHHHHHHHcChhhhc--ccCcEEEEcCCe
Confidence 1235778999999999998753211 112367776653
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=157.71 Aligned_cols=175 Identities=17% Similarity=0.159 Sum_probs=127.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHHh--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVALK-- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~-- 73 (300)
|++++++|||||++||.+++++|+++| ++|++++|+.++.....+.+ ...+.++++|++|.++++.+++.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G---~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAG---AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999 89999999866544433322 23577889999999987776654
Q ss_pred --cCCCCEEEEcccccCcc---ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCC-C-CCCCCCC
Q 022280 74 --FGQPDVVVNCAALSVPR---VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGV-K-SFYKEED 143 (300)
Q Consensus 74 --~~~~d~vih~a~~~~~~---~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~-~-~~~~E~~ 143 (300)
++++|++|||||..... ...+.++..+.+|+.|.+ .+.+.+.. .+.+++|++||...+... . ..++++.
T Consensus 89 ~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~-~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~~ 167 (313)
T PRK05854 89 AEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHF-ALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWER 167 (313)
T ss_pred HhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHH-HHHHHHHHHHHhCCCCeEEEechhhcCCCcCcccccccc
Confidence 46799999999986432 233567788999999985 55555442 234599999997654332 1 1344444
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC---------CceeEeeeeeeC
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS---------NFAILRSSIIYG 179 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~---------~~~ilR~~~v~G 179 (300)
...+...|+.||.+.+.+.++++. .+..+.||.+-.
T Consensus 168 ~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T 212 (313)
T PRK05854 168 SYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPT 212 (313)
T ss_pred cCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceecc
Confidence 455677899999999998876642 345577777643
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=152.16 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=134.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-CchhhhhhcCCCceeEEEeecCCchhHHHHHHhc----CC-
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF----GQ- 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~- 76 (300)
||++|||||+|+||++++++|+++| ++|++++|++ +....+.+..+..+.++.+|++|.++++.+++.. +.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKG---THVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQED 77 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcC---CEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCcc
Confidence 4789999999999999999999999 8999999986 3334444444456778999999999887777542 21
Q ss_pred ---CCEEEEcccccCc-----cccccChhhhhhcccccchHHHHH----hhhhc-cCCeEEEeeccccccCCCCCCCCCC
Q 022280 77 ---PDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLS----SFTEN-KENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 77 ---~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~----~~~~~-~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
..++||+||...+ ..+.+.+...+++|+.+.+ .+++ .+++. +.++||++||..++.+.+
T Consensus 78 ~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------- 149 (251)
T PRK06924 78 NVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPM-ILTSTFMKHTKDWKVDKRVINISSGAAKNPYF------- 149 (251)
T ss_pred cCCceEEEEcceecccCcccccCCHHHHHHHhccceehHH-HHHHHHHHHHhccCCCceEEEecchhhcCCCC-------
Confidence 2289999997533 1223445677899999875 4444 34343 346899999977654432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcCC---------ceeEeeeeeeCCCCCC--CCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCSN---------FAILRSSIIYGPQTIS--PVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~~---------~~ilR~~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
+...|+.+|.+.+.+++.++.+ +..++|+.+-.+.... ....... ....... . . ...
T Consensus 150 ---~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~-~~~~~~~-~-----~--~~~ 217 (251)
T PRK06924 150 ---GWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDF-TNLDRFI-T-----L--KEE 217 (251)
T ss_pred ---CcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccc-hHHHHHH-H-----H--hhc
Confidence 3678999999999999876532 3445665553321000 0000000 0000000 0 0 012
Q ss_pred cCceeHHHHHHHHHHHHhc
Q 022280 213 RCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~ 231 (300)
..+..++|+|+.++.+++.
T Consensus 218 ~~~~~~~dva~~~~~l~~~ 236 (251)
T PRK06924 218 GKLLSPEYVAKALRNLLET 236 (251)
T ss_pred CCcCCHHHHHHHHHHHHhc
Confidence 2468899999999999986
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=149.81 Aligned_cols=219 Identities=17% Similarity=0.142 Sum_probs=143.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
++++||||+|+||.++++.|+++| ++|+++.|+.+....+... .+..+.++.+|++|++++.++++ .+++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDG---FAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999 8999999886544433322 24457778999999998766544 4567
Q ss_pred CCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hcc-CCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENK-ENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 77 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+|+|||+|+..... .+.+.++..+++|+.+++ .+++.+. +.+ .+++|++||.....+.+.
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 146 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVL-FGIQAAARQFKKQGHGGKIINAASIAGHEGNPI---------- 146 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhCCCCeEEEEecchhhcCCCCC----------
Confidence 99999999975432 122345678999999985 5555443 333 269999999665444333
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeec------c--Ccc
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF------H--DEC 212 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~ 212 (300)
...|+.+|.+.+.+++.+.. .+.+++|+.+..+... .+..... ........ . ...
T Consensus 147 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 216 (254)
T TIGR02415 147 LSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWE---------EIDEETS-EIAGKPIGEGFEEFSSEIAL 216 (254)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhh---------hhhhhhh-hcccCchHHHHHHHHhhCCC
Confidence 67899999999998876543 4566777766433210 0000000 00000000 0 012
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
..+.+++|+++++.++++..... ..+.++.+.++
T Consensus 217 ~~~~~~~~~a~~~~~l~~~~~~~--~~g~~~~~d~g 250 (254)
T TIGR02415 217 GRPSEPEDVAGLVSFLASEDSDY--ITGQSILVDGG 250 (254)
T ss_pred CCCCCHHHHHHHHHhhcccccCC--ccCcEEEecCC
Confidence 35788999999999999875322 11225555554
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-19 Score=148.83 Aligned_cols=196 Identities=18% Similarity=0.179 Sum_probs=135.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecCCc--hhHHH----H
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLKSG--SGFDA----V 70 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~--~~~~~----~ 70 (300)
|.+++++||||+|+||+++++.|+++| ++|++++|+++....+.+.+ .....++.+|+++. +++.. +
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i 80 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAG---ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATI 80 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHH
Confidence 346899999999999999999999999 89999999876555443332 22355678999763 33433 3
Q ss_pred HHhc-CCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCC
Q 022280 71 ALKF-GQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 71 ~~~~-~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
.+.+ +++|+|||+||.... ....+.+...+++|+.+++ .+++++.+ .+.+++|++||.....+..
T Consensus 81 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~-~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~---- 155 (239)
T PRK08703 81 AEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPM-GLTRALFPLLKQSPDASVIFVGESHGETPKA---- 155 (239)
T ss_pred HHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHH-HHHHHHHHHHHhCCCCEEEEEeccccccCCC----
Confidence 3334 579999999996432 1122344567899999986 76666543 4456999999865433222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcC--------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCS--------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~--------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
....|+.||.+++.+++.++. ++.+++||.|.+|......+ +...
T Consensus 156 ------~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~~---------------------~~~~ 208 (239)
T PRK08703 156 ------YWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHP---------------------GEAK 208 (239)
T ss_pred ------CccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccCC---------------------CCCc
Confidence 256899999999998876543 35678888888764211000 1111
Q ss_pred cCceeHHHHHHHHHHHHhc
Q 022280 213 RCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~ 231 (300)
..+...+|++..+.+++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 209 SERKSYGDVLPAFVWWASA 227 (239)
T ss_pred cccCCHHHHHHHHHHHhCc
Confidence 2346799999999999973
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=152.07 Aligned_cols=219 Identities=17% Similarity=0.138 Sum_probs=142.6
Q ss_pred CCCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCCC---chhhhhhcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTP---LPQLLLDALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|.+|+++||||+ +.||+++++.|+++| ++|++.+|+.+ ....+...++.. ..+.+|++|.++++.+++
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G---~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~ 78 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQG---AELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLK 78 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCC---CEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHH
Confidence 356899999997 799999999999999 89999888742 223333333333 568999999998766654
Q ss_pred -hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
.++++|++|||||.... ..+.+.++..+++|+.+++ .+.+.+.. ..-++||++||.....+.+.
T Consensus 79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~p~m~~~g~Iv~isS~~~~~~~~~---- 153 (274)
T PRK08415 79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLI-ELTRALLPLLNDGASVLTLSYLGGVKYVPH---- 153 (274)
T ss_pred HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHH-HHHHHHHHHhccCCcEEEEecCCCccCCCc----
Confidence 45789999999997532 1123346778999999986 66655543 12258999999764433222
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+.+.+.+.++.+ +..+.|+.+..+.... .+ ......... . .. .+...
T Consensus 154 ------~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~---~~~~~~~~~-~-~~-----~pl~r 216 (274)
T PRK08415 154 ------YNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASG-IG---DFRMILKWN-E-IN-----APLKK 216 (274)
T ss_pred ------chhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhc-cc---hhhHHhhhh-h-hh-----Cchhc
Confidence 567999999999999877653 3445666554321100 00 000000000 0 00 12345
Q ss_pred ceeHHHHHHHHHHHHhccc--cccccccceeeecCCC
Q 022280 215 PVYVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPD 249 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~ 249 (300)
+..++|+++++++++.... ..|+ ++.+.+|.
T Consensus 217 ~~~pedva~~v~fL~s~~~~~itG~----~i~vdGG~ 249 (274)
T PRK08415 217 NVSIEEVGNSGMYLLSDLSSGVTGE----IHYVDAGY 249 (274)
T ss_pred cCCHHHHHHHHHHHhhhhhhccccc----EEEEcCcc
Confidence 6789999999999997532 2333 67776664
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-19 Score=147.47 Aligned_cols=217 Identities=18% Similarity=0.191 Sum_probs=144.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hcC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KFG 75 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~~ 75 (300)
|++|||||+|+||+++++.|+++| ++|+++.|+ ++........ .+..+.++.+|++|++++.++++ .++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDG---YRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELG 77 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999 889888883 3222222221 23467788999999988766554 356
Q ss_pred CCCEEEEcccccCccc----cccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|+|||+||...... ..+.+...+.+|+.+++ .+ +..+++.+.+++|++||.....+...
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~iss~~~~~~~~~---------- 146 (242)
T TIGR01829 78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVF-NVTQPVIDGMRERGWGRIINISSVNGQKGQFG---------- 146 (242)
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEEcchhhcCCCCC----------
Confidence 7999999999754321 22345667889999875 54 44455567779999999654433222
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.+|.+.+.+++.+.. ++.+++|+.+.++... .....+..... ... ....+..++|
T Consensus 147 ~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~-----~~~~~~~~~~~-~~~-------~~~~~~~~~~ 213 (242)
T TIGR01829 147 QTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVM-----AMREDVLNSIV-AQI-------PVGRLGRPEE 213 (242)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCcccc-----ccchHHHHHHH-hcC-------CCCCCcCHHH
Confidence 56899999988887776532 4577888888765421 11122222211 111 1223567899
Q ss_pred HHHHHHHHHhccccccccccceeeecCCC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++++.+++..+.. ...++++.+.++.
T Consensus 214 ~a~~~~~l~~~~~~--~~~G~~~~~~gg~ 240 (242)
T TIGR01829 214 IAAAVAFLASEEAG--YITGATLSINGGL 240 (242)
T ss_pred HHHHHHHHcCchhc--CccCCEEEecCCc
Confidence 99999888765321 1123478887763
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=172.22 Aligned_cols=226 Identities=12% Similarity=0.182 Sum_probs=148.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+.+........+ ...+..+++|++|.+++..+++
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~G---a~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~ 489 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEG---AHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL 489 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999 89999999865544433222 1245678999999998766655
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHH----HhhhhccC-CeEEEeeccccccCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWL----SSFTENKE-NLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~----~~~~~~~~-~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
.++++|+||||||...... ..+.++..+++|+.+.+ .+. ..+++.+. ++||++||...+.+.+.
T Consensus 490 ~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~-~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~------ 562 (676)
T TIGR02632 490 AYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYF-LVAREAFRQMREQGLGGNIVFIASKNAVYAGKN------ 562 (676)
T ss_pred hcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCC------
Confidence 4578999999999754322 12234567888988875 443 33444443 58999999765444332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeee-CCCCCCCCCC--C-----chHHHHHHHHhcCCceeec
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIY-GPQTISPVPK--S-----LPIQWIDSVLSKGEKVEFF 208 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~-G~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~ 208 (300)
...|+.||.+.+.+++.++. ++..++|+.|+ |.+....... . ....-...... .
T Consensus 563 ----~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 631 (676)
T TIGR02632 563 ----ASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEHYA-------K 631 (676)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHHHH-------h
Confidence 67899999999999987643 45678888776 3221110000 0 00000000000 0
Q ss_pred cCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 209 HDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 209 ~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
....+.+++++|+|+++.+++...... ..+.++++++|..
T Consensus 632 r~~l~r~v~peDVA~av~~L~s~~~~~--~TG~~i~vDGG~~ 671 (676)
T TIGR02632 632 RTLLKRHIFPADIAEAVFFLASSKSEK--TTGCIITVDGGVP 671 (676)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCcccC--CcCcEEEECCCch
Confidence 123456789999999999998653221 1233899988754
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-19 Score=149.27 Aligned_cols=206 Identities=16% Similarity=0.146 Sum_probs=142.3
Q ss_pred CCCCeEEEEcCCc-cchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CC-CceeEEEeecCCchhHHHHHHh-
Q 022280 1 MSKKRVLVVGGTG-YLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LP-HSFVFFDVDLKSGSGFDAVALK- 73 (300)
Q Consensus 1 ~~~~~ilItGatG-~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~-~~~~~~~~D~~~~~~~~~~~~~- 73 (300)
|.+++++||||+| .||+++++.|+++| ++|++.+|+.+......+. .+ ..+.++++|+++++++..+++.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEG---ARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 3468999999997 79999999999999 8899998876554443322 22 3577789999999887766653
Q ss_pred ---cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hcc-CCeEEEeeccccccCCCCCCCC
Q 022280 74 ---FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENK-ENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 74 ---~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~E 141 (300)
++++|+||||||...... ..+.++..+++|+.+++ .+++.+. ..+ .+++|++||...+.+..
T Consensus 92 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~----- 165 (262)
T PRK07831 92 VERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTF-RATRAALRYMRARGHGGVIVNNASVLGWRAQH----- 165 (262)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCcEEEEeCchhhcCCCC-----
Confidence 478999999999753221 22345677889999986 6655544 333 45899998866543332
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
+...|+.+|.+.+.+++.++. ++..++|+.+..+..... ........ +.... ....
T Consensus 166 -----~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~----~~~~~~~~-~~~~~-------~~~r 228 (262)
T PRK07831 166 -----GQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKV----TSAELLDE-LAARE-------AFGR 228 (262)
T ss_pred -----CCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccc----cCHHHHHH-HHhcC-------CCCC
Confidence 266899999999999987653 456788888876532111 11122222 21111 1235
Q ss_pred ceeHHHHHHHHHHHHhcc
Q 022280 215 PVYVRDVVKIILALTNRW 232 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~ 232 (300)
+..++|+++++++++...
T Consensus 229 ~~~p~~va~~~~~l~s~~ 246 (262)
T PRK07831 229 AAEPWEVANVIAFLASDY 246 (262)
T ss_pred CcCHHHHHHHHHHHcCch
Confidence 678999999999999764
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=153.41 Aligned_cols=209 Identities=12% Similarity=0.008 Sum_probs=136.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
+++||||||||+||+++++.|+++| ++|+++.|+++....+.+ ..+..+.++++|++|++++...+. .++|+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~id~ 76 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG---HNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAE--WDVDV 76 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhc--CCCCE
Confidence 5789999999999999999999999 899999998654443332 223457778999999988777654 38999
Q ss_pred EEEcccccCcccc----ccChhhhhhcccccchHHHH----HhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 80 VVNCAALSVPRVC----ENDPDSAMSINVPSSLVNWL----SSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 80 vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~~l~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
||||||....... .+.++..+++|+.+++ .+. +.+.+.+.++||++||...+..... ...|
T Consensus 77 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~----------~~~Y 145 (257)
T PRK09291 77 LLNNAGIGEAGAVVDIPVELVRELFETNVFGPL-ELTQGFVRKMVARGKGKVVFTSSMAGLITGPF----------TGAY 145 (257)
T ss_pred EEECCCcCCCcCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCceEEEEcChhhccCCCC----------cchh
Confidence 9999997643221 2234567889999875 444 4445566689999999765433222 5689
Q ss_pred HHHHHHHHHHHHHH-------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeec-cCcccCceeHHHHHH
Q 022280 152 GKSKVAAEKFIYEK-------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF-HDECRCPVYVRDVVK 223 (300)
Q Consensus 152 ~~sK~~~e~~~~~~-------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~a~ 223 (300)
+.||.++|.+.+.+ +.+++++||+.+.-+.. . .....+....-.....+... +.....+.+++|+++
T Consensus 146 ~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
T PRK09291 146 CASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFN-D----TMAETPKRWYDPARNFTDPEDLAFPLEQFDPQEMID 220 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccch-h----hhhhhhhhhcchhhHHHhhhhhhccccCCCHHHHHH
Confidence 99999999877654 34678899887632211 0 00000000000000000000 112234578999999
Q ss_pred HHHHHHhcc
Q 022280 224 IILALTNRW 232 (300)
Q Consensus 224 ~~~~~~~~~ 232 (300)
.++.++..+
T Consensus 221 ~~~~~l~~~ 229 (257)
T PRK09291 221 AMVEVIPAD 229 (257)
T ss_pred HHHHHhcCC
Confidence 888888653
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=147.50 Aligned_cols=222 Identities=14% Similarity=0.091 Sum_probs=145.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhh---cCCCceeEEEeecCCchhHHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
|+++++|||||+|+||.++++.|+++| +.|++..|+... ...+.+ ..+..+.++.+|++|.+++.++++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G---~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEK---AKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999 888888875432 222222 223456678999999988766554
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHH----HHhhhhcc-CCeEEEeeccccccCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNW----LSSFTENK-ENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l----~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
.++++|++||+||...... ..+.++..+++|+.+++ .+ ++.+.+.+ .+++|++||...+.+.+
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~------- 153 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAF-LGSREAIKYFVEHDIKGNIINMSSVHEQIPWP------- 153 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCcEEEEEccccccCCCC-------
Confidence 3568999999999754322 12345677899998885 44 44445544 35999999976554432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
+...|+.+|.+.+.+.+.++. ++..++|+.+..+......+. .... ....... ....+.
T Consensus 154 ---~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~---~~~~-~~~~~~~-------~~~~~~ 219 (261)
T PRK08936 154 ---LFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFAD---PKQR-ADVESMI-------PMGYIG 219 (261)
T ss_pred ---CCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCC---HHHH-HHHHhcC-------CCCCCc
Confidence 267899999998887776543 467788988876642211111 1111 1111111 123567
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.++|+++++.+++..... ...+..+.+.++.
T Consensus 220 ~~~~va~~~~~l~s~~~~--~~~G~~i~~d~g~ 250 (261)
T PRK08936 220 KPEEIAAVAAWLASSEAS--YVTGITLFADGGM 250 (261)
T ss_pred CHHHHHHHHHHHcCcccC--CccCcEEEECCCc
Confidence 899999999999875321 1112256666653
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-19 Score=148.64 Aligned_cols=222 Identities=11% Similarity=0.036 Sum_probs=141.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
|++|||||+|+||++++++|+++| ++|++++|+++......+.+ ...+.++.+|++|+++++++++ .++++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG---ARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 589999999999999999999999 89999999866554444332 1356678999999998776664 45789
Q ss_pred CEEEEcccccCcc------ccccChhhhhhcccccchH---HHHHhhh-hccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR------VCENDPDSAMSINVPSSLV---NWLSSFT-ENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 78 d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~---~l~~~~~-~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
|+|||+||..... ...+++...+.+|+.++.. .++..+. +.+.++||++||.....+.+.
T Consensus 78 d~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~~---------- 147 (259)
T PRK08340 78 DALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMPP---------- 147 (259)
T ss_pred CEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCCC----------
Confidence 9999999974311 1122344567888887641 2233333 234569999999877644332
Q ss_pred CChhHHHHHHHHHHHHHHcCCc-------eeEeeeeeeCCCCCCCCC------CCchHHHHHHHHhcCCceeeccCcccC
Q 022280 148 VNVYGKSKVAAEKFIYEKCSNF-------AILRSSIIYGPQTISPVP------KSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~~~-------~ilR~~~v~G~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.+|.+.+.+.+.++.++ ..+.|+.+-.+....... ...........+.. ..+.+.
T Consensus 148 ~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~p~~r 220 (259)
T PRK08340 148 LVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLE-------RTPLKR 220 (259)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhc-------cCCccC
Confidence 5689999999999998876543 334444443221100000 00000000000000 012345
Q ss_pred ceeHHHHHHHHHHHHhcc--ccccccccceeeecCCC
Q 022280 215 PVYVRDVVKIILALTNRW--LSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~--~~~~~~~~~i~ni~~~~ 249 (300)
+..++|+++++.+++... ...|+ ++.+.+|.
T Consensus 221 ~~~p~dva~~~~fL~s~~~~~itG~----~i~vdgg~ 253 (259)
T PRK08340 221 TGRWEELGSLIAFLLSENAEYMLGS----TIVFDGAM 253 (259)
T ss_pred CCCHHHHHHHHHHHcCcccccccCc----eEeecCCc
Confidence 788999999999999753 22333 67776664
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-19 Score=150.08 Aligned_cols=221 Identities=18% Similarity=0.128 Sum_probs=143.3
Q ss_pred CCCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCCCch---hhhhhcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHSTPLP---QLLLDALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|+++++|||||++ .||++++++|+++| ++|++.+|+.+.. ..+.+..+. ..++++|++|.++++.+++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~G---a~V~~~~r~~~~~~~~~~~~~~~g~-~~~~~~Dv~d~~~v~~~~~~~~ 80 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQG---AELAFTYQGEALGKRVKPLAESLGS-DFVLPCDVEDIASVDAVFEALE 80 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCC---CEEEEecCchHHHHHHHHHHHhcCC-ceEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999997 99999999999999 8999988874322 222222222 2458899999998766654
Q ss_pred -hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
.++++|++|||||.... ..+.+.++..+++|+.+++ .+++++.. ...++||++||.....+.+.
T Consensus 81 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~-~l~~~~~~~m~~~G~Iv~isS~~~~~~~~~---- 155 (271)
T PRK06505 81 KKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFT-EIAKRAAKLMPDGGSMLTLTYGGSTRVMPN---- 155 (271)
T ss_pred HHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHH-HHHHHHHHhhccCceEEEEcCCCccccCCc----
Confidence 45789999999997532 1233456778899999986 66655443 12258999999765433222
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+++.+.+.++.+ +..+.|+.+-.+... ... ............. ....
T Consensus 156 ------~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~-~~~---~~~~~~~~~~~~~-------p~~r 218 (271)
T PRK06505 156 ------YNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGA-GIG---DARAIFSYQQRNS-------PLRR 218 (271)
T ss_pred ------cchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccc-cCc---chHHHHHHHhhcC-------Cccc
Confidence 568999999999998877553 455677666443210 000 0000111111111 1234
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+..++|+++++++++...... ..+.++.+.+|.
T Consensus 219 ~~~peeva~~~~fL~s~~~~~--itG~~i~vdgG~ 251 (271)
T PRK06505 219 TVTIDEVGGSALYLLSDLSSG--VTGEIHFVDSGY 251 (271)
T ss_pred cCCHHHHHHHHHHHhCccccc--cCceEEeecCCc
Confidence 678999999999999753211 112367777664
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=153.75 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=121.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~~d 78 (300)
||++|||||+|+||+++++.|+++| ++|++++|+.+....+.. ..+.++.+|+++.+++.++++. ++++|
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 74 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG---YEVWATARKAEDVEALAA---AGFTAVQLDVNDGAALARLAEELEAEHGGLD 74 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH---CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 5789999999999999999999999 899999998655444332 2456789999999887766653 46899
Q ss_pred EEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 79 VVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 79 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
+|||+||...... +.+.++..+++|+.+++ .+++.+.. .+.+++|++||...+.+... ...|
T Consensus 75 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~~Y 143 (274)
T PRK05693 75 VLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVV-GVTRALFPLLRRSRGLVVNIGSVSGVLVTPF----------AGAY 143 (274)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhhcCCEEEEECCccccCCCCC----------ccHH
Confidence 9999999754321 22345678899999986 77776543 34468999999765544322 5689
Q ss_pred HHHHHHHHHHHHHHc-------CCceeEeeeeeeCC
Q 022280 152 GKSKVAAEKFIYEKC-------SNFAILRSSIIYGP 180 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~ 180 (300)
+.+|.+.+.+.+.+. .++.+++|+.+..+
T Consensus 144 ~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~ 179 (274)
T PRK05693 144 CASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQ 179 (274)
T ss_pred HHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccc
Confidence 999999999876543 35678999988654
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-19 Score=147.36 Aligned_cols=213 Identities=14% Similarity=0.061 Sum_probs=143.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHHh----cC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
++++||||||+|+||+++++.|+++| ++|++++|+++....+.... ...+.++++|++++++++.++++ ++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEG---AQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999 89999999876554443222 13567789999999987776653 45
Q ss_pred CCCEEEEcccccCcc--ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeecccc-ccCCCCCCCCCCCCCCCCh
Q 022280 76 QPDVVVNCAALSVPR--VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQV-YEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 76 ~~d~vih~a~~~~~~--~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~-~~~~~~~~~E~~~~~p~~~ 150 (300)
++|.+||+++..... ...+..+..++.|+.+.+ .+++.+.+. ..+++|++||... +++.. +...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~----------~~~~ 149 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPL-YAVNASLRFLKEGSSIVLVSSMSGIYKASP----------DQLS 149 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHH-HHHHHHHHHHhcCCEEEEEecchhcccCCC----------CchH
Confidence 689999999864321 111234567899999885 666665442 2258999998654 32221 3567
Q ss_pred hHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHH
Q 022280 151 YGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 223 (300)
|+.+|.+.+.+++.+. .+++++||+.++++-... ..+ . .. . .....++..+|+++
T Consensus 150 Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~-------~~~-~-~~------~---~~~~~~~~~~~va~ 211 (238)
T PRK05786 150 YAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPE-------RNW-K-KL------R---KLGDDMAPPEDFAK 211 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCch-------hhh-h-hh------c---cccCCCCCHHHHHH
Confidence 9999999987776543 367899999999863210 001 0 00 0 00113577899999
Q ss_pred HHHHHHhccccccccccceeeecCC
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
++++++...... ..+..+.+.++
T Consensus 212 ~~~~~~~~~~~~--~~g~~~~~~~~ 234 (238)
T PRK05786 212 VIIWLLTDEADW--VDGVVIPVDGG 234 (238)
T ss_pred HHHHHhcccccC--ccCCEEEECCc
Confidence 999999753321 11235555543
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-19 Score=150.46 Aligned_cols=219 Identities=14% Similarity=0.163 Sum_probs=143.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC---------CchhhhhhcC---CCceeEEEeecCCchhHHH
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST---------PLPQLLLDAL---PHSFVFFDVDLKSGSGFDA 69 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~---------~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~ 69 (300)
+++++|||||+++||+++++.|+++| ++|++.+++. +....+.+.+ +..+.++.+|++|.+++++
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G---~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEG---ARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAAN 81 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHH
Confidence 56899999999999999999999999 8898887764 3333333322 3456678999999988766
Q ss_pred HHH----hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hcc------CCeEEEeecccc
Q 022280 70 VAL----KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENK------ENLLIHLSTDQV 131 (300)
Q Consensus 70 ~~~----~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~------~~~~v~~SS~~~ 131 (300)
+++ .++++|++|||||..... ...+.++..+++|+.+++ .+++++. +.+ .++||++||...
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~ 160 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHF-ATLRHAAAYWRAESKAGRAVDARIINTSSGAG 160 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHH-HHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence 554 457899999999975422 223456788999999986 6665553 211 248999999776
Q ss_pred ccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCc
Q 022280 132 YEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK 204 (300)
Q Consensus 132 ~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (300)
..+... ...|+.||.+++.+.+.++.+ +..+.|+ + ..... ........ ...
T Consensus 161 ~~~~~~----------~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~-----~T~~~----~~~~~~~~-~~~- 218 (286)
T PRK07791 161 LQGSVG----------QGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-A-----RTRMT----ETVFAEMM-AKP- 218 (286)
T ss_pred CcCCCC----------chhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-C-----CCCcc----hhhHHHHH-hcC-
Confidence 544433 678999999999998876553 3444443 2 11110 11111111 100
Q ss_pred eeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 205 VEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 205 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
......+..++|+++++++++..... ...+.++.+.+|....
T Consensus 219 ----~~~~~~~~~pedva~~~~~L~s~~~~--~itG~~i~vdgG~~~~ 260 (286)
T PRK07791 219 ----EEGEFDAMAPENVSPLVVWLGSAESR--DVTGKVFEVEGGKISV 260 (286)
T ss_pred ----cccccCCCCHHHHHHHHHHHhCchhc--CCCCcEEEEcCCceEE
Confidence 01112356799999999999875321 1123378887775543
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-19 Score=149.40 Aligned_cols=199 Identities=14% Similarity=0.115 Sum_probs=134.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch-------hhhhh---cCCCceeEEEeecCCchhHHHHHH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-------QLLLD---ALPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-------~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
+++++||||+|+||+++++.|+++| ++|++++|+.+.. ....+ ..+..+.++++|+++++++..+++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDG---ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 5799999999999999999999999 8999999875431 11111 223457778999999998766654
Q ss_pred ----hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCC
Q 022280 73 ----KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 73 ----~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
.++++|+|||+||...... ..+.++..+++|+.+++ ++++++.. .+.+++|++||.....+.
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~-~l~~~~~~~~~~~~~g~iv~iss~~~~~~~----- 156 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTF-LVSQACLPHLKKSENPHILTLSPPLNLDPK----- 156 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHH-HHHHHHHHHHHhcCCCEEEEECCchhcccc-----
Confidence 3478999999999754322 22345678899999996 88777754 334589999885432221
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcCCc-------eeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCSNF-------AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-------~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...+...|+.||.++|.+++.++.++ ..+.|+.+.. . .+..... .+. ....
T Consensus 157 ---~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~----t--------~~~~~~~-~~~------~~~~ 214 (273)
T PRK08278 157 ---WFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIA----T--------AAVRNLL-GGD------EAMR 214 (273)
T ss_pred ---ccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccc----c--------HHHHhcc-ccc------cccc
Confidence 01236789999999999998876543 3344431110 0 1111111 111 1223
Q ss_pred CceeHHHHHHHHHHHHhcc
Q 022280 214 CPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~ 232 (300)
.+..++|+++++++++...
T Consensus 215 ~~~~p~~va~~~~~l~~~~ 233 (273)
T PRK08278 215 RSRTPEIMADAAYEILSRP 233 (273)
T ss_pred ccCCHHHHHHHHHHHhcCc
Confidence 4678999999999999764
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-19 Score=148.23 Aligned_cols=195 Identities=15% Similarity=0.168 Sum_probs=132.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecC--CchhHHHH----H
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLK--SGSGFDAV----A 71 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~--~~~~~~~~----~ 71 (300)
.++++|||||+|+||.++++.|+++| ++|++++|+.+....+...+ ...+.++.+|++ +.+++..+ .
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G---~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHG---ATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 89999999866544443322 234566778886 44444443 3
Q ss_pred HhcCCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCC
Q 022280 72 LKFGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 72 ~~~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
+.++++|+|||+|+.... ....+.++..+++|+.+++ ++++++ .+.+.++||++||.....+...
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~-~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~~~----- 161 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATF-MLTQALLPLLLKSPAASLVFTSSSVGRQGRAN----- 161 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHH-HHHHHHHHHHHhCCCCEEEEEccHhhcCCCCC-----
Confidence 445689999999987532 1122345678999999986 776665 3456789999999765543322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|+.||.+.+.+++.+..+ +.+++|+.+-.+... ... .. .....+
T Consensus 162 -----~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~-------------~~~-~~-------~~~~~~ 215 (247)
T PRK08945 162 -----WGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRA-------------SAF-PG-------EDPQKL 215 (247)
T ss_pred -----CcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchh-------------hhc-Cc-------ccccCC
Confidence 568999999999988876542 344555544322100 000 00 011235
Q ss_pred eeHHHHHHHHHHHHhc
Q 022280 216 VYVRDVVKIILALTNR 231 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~ 231 (300)
..++|+++++++++..
T Consensus 216 ~~~~~~~~~~~~~~~~ 231 (247)
T PRK08945 216 KTPEDIMPLYLYLMGD 231 (247)
T ss_pred CCHHHHHHHHHHHhCc
Confidence 7799999999998865
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=147.40 Aligned_cols=218 Identities=16% Similarity=0.208 Sum_probs=140.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhhhcC----CCceeEEEeecCCchhH----HHH----
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDAL----PHSFVFFDVDLKSGSGF----DAV---- 70 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~~~~----~~~~~~~~~D~~~~~~~----~~~---- 70 (300)
+.++||||+|+||++++++|+++| ++|+++.|+ ++....+.+.+ +....++.+|++|.+++ +.+
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G---~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~ 78 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEG---YRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDAC 78 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCC---CeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHH
Confidence 579999999999999999999999 889987765 33443333322 23455689999998743 233
Q ss_pred HHhcCCCCEEEEcccccCcccc----cc-----------ChhhhhhcccccchHHHHHhhhhc----------cCCeEEE
Q 022280 71 ALKFGQPDVVVNCAALSVPRVC----EN-----------DPDSAMSINVPSSLVNWLSSFTEN----------KENLLIH 125 (300)
Q Consensus 71 ~~~~~~~d~vih~a~~~~~~~~----~~-----------~~~~~~~~nv~~~~~~l~~~~~~~----------~~~~~v~ 125 (300)
.+.++++|+||||||....... .. .....+++|+.+++ .+.+++... +..++|+
T Consensus 79 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~~~~~~~~iv~ 157 (267)
T TIGR02685 79 FRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPY-FLIKAFAQRQAGTRAEQRSTNLSIVN 157 (267)
T ss_pred HHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHH-HHHHHHHHHhhhcccccCCCCeEEEE
Confidence 2345789999999997543111 11 24467899999986 776654321 1236888
Q ss_pred eeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHH
Q 022280 126 LSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSV 198 (300)
Q Consensus 126 ~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~ 198 (300)
+||.....+.+ +...|+.||.+++.+++.++. ++..++|+.+..+... + .... ..
T Consensus 158 ~~s~~~~~~~~----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~---~----~~~~-~~ 219 (267)
T TIGR02685 158 LCDAMTDQPLL----------GFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAM---P----FEVQ-ED 219 (267)
T ss_pred ehhhhccCCCc----------ccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCcccc---c----hhHH-HH
Confidence 88865543322 367899999999999987643 4677888887654321 1 1111 11
Q ss_pred HhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 199 LSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 199 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
.....+ + ...+..++|+++++++++...... ..+.++.+.++..+
T Consensus 220 ~~~~~~--~----~~~~~~~~~va~~~~~l~~~~~~~--~~G~~~~v~gg~~~ 264 (267)
T TIGR02685 220 YRRKVP--L----GQREASAEQIADVVIFLVSPKAKY--ITGTCIKVDGGLSL 264 (267)
T ss_pred HHHhCC--C----CcCCCCHHHHHHHHHHHhCcccCC--cccceEEECCceec
Confidence 111111 0 123568999999999999763211 12337777776544
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=148.69 Aligned_cols=221 Identities=18% Similarity=0.125 Sum_probs=143.3
Q ss_pred CCCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCC---CchhhhhhcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHST---PLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~---~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|.++++|||||+ +.||.+++++|+++| ++|++..|+. +....+.++++ ....+++|++|+++++.+++
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G---~~V~l~~r~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~ 83 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAG---AELAFTYQGDALKKRVEPLAAELG-AFVAGHCDVTDEASIDAVFETLE 83 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEcCchHHHHHHHHHHHhcC-CceEEecCCCCHHHHHHHHHHHH
Confidence 456899999997 899999999999999 8998888763 22233333333 24458999999998777654
Q ss_pred -hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
+++++|++|||||+... +.+.+.++..+++|+.+++ .+++.+... +-+++|++||.....+.+.
T Consensus 84 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~-~l~~~~~~~~~~~g~Iv~iss~~~~~~~p~---- 158 (272)
T PRK08159 84 KKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFT-AVAQRAEKLMTDGGSILTLTYYGAEKVMPH---- 158 (272)
T ss_pred HhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHH-HHHHHHHHhcCCCceEEEEeccccccCCCc----
Confidence 45789999999997532 1123356788999999986 777665541 2369999998655433222
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+.+.+.+.++.+ +..+.|+.+..+-.. ..+. . .......... .+...
T Consensus 159 ------~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~-~~~~-~--~~~~~~~~~~-------~p~~r 221 (272)
T PRK08159 159 ------YNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAAS-GIGD-F--RYILKWNEYN-------APLRR 221 (272)
T ss_pred ------chhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHh-cCCc-c--hHHHHHHHhC-------Ccccc
Confidence 568999999999999877553 344555555322100 0000 0 0011100000 11234
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+..++|+|+++++++...... ..+.++.+.+|.
T Consensus 222 ~~~peevA~~~~~L~s~~~~~--itG~~i~vdgG~ 254 (272)
T PRK08159 222 TVTIEEVGDSALYLLSDLSRG--VTGEVHHVDSGY 254 (272)
T ss_pred cCCHHHHHHHHHHHhCccccC--ccceEEEECCCc
Confidence 678999999999999753211 123377777764
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=150.25 Aligned_cols=221 Identities=17% Similarity=0.218 Sum_probs=142.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhhhc---CCCceeEEEeecCCchhHHHHHHh---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK--- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~--- 73 (300)
+.+++++||||+|+||++++++|+++| ++|++.+++.. ......+. .+..+.++.+|++|.+++..+++.
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~G---a~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLG---ATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999 88998887532 23333222 245677889999999887766543
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----c-------cCCeEEEeeccccccCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----N-------KENLLIHLSTDQVYEGVKSF 138 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~-------~~~~~v~~SS~~~~~~~~~~ 138 (300)
++++|+||||||..... ...+.++..+++|+.+++ .+++++.. . ..+++|++||...+.+...
T Consensus 87 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~-~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~- 164 (306)
T PRK07792 87 LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHF-LLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPVG- 164 (306)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCCC-
Confidence 57899999999986532 223456778999999996 77776542 1 1258999999776544333
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHcCCce--eEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 139 YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFA--ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 139 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~--ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.+|.+++.+++.++.++. -+|.. .+.|+..... ..... .... . ......+++
T Consensus 165 ---------~~~Y~asKaal~~l~~~la~e~~~~gI~vn-~i~Pg~~t~~--------~~~~~-~~~~-~-~~~~~~~~~ 223 (306)
T PRK07792 165 ---------QANYGAAKAGITALTLSAARALGRYGVRAN-AICPRARTAM--------TADVF-GDAP-D-VEAGGIDPL 223 (306)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHhhhcCeEEE-EECCCCCCch--------hhhhc-cccc-h-hhhhccCCC
Confidence 56899999999999887765321 12322 2344321110 10000 0000 0 001123456
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++|++.++.+++...... ..+.+|.+.++.
T Consensus 224 ~pe~va~~v~~L~s~~~~~--~tG~~~~v~gg~ 254 (306)
T PRK07792 224 SPEHVVPLVQFLASPAAAE--VNGQVFIVYGPM 254 (306)
T ss_pred CHHHHHHHHHHHcCccccC--CCCCEEEEcCCe
Confidence 8999999999988653211 112377776653
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-19 Score=148.11 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=117.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh-----c---
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK-----F--- 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-----~--- 74 (300)
||++|||||||+||++++++|+++| ++|++++|+.+.. +....+.++.++++|+++.++++.+++. +
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G---~~v~~~~r~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPG---IAVLGVARSRHPS--LAAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDG 75 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCC---CEEEEEecCcchh--hhhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccC
Confidence 4689999999999999999999999 8999999875432 2222344677889999999988774432 2
Q ss_pred CCCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|++|||||..... .+.+.++..+++|+.+++ .+.+.+ .+.+.++||++||...+.+...
T Consensus 76 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 146 (243)
T PRK07023 76 ASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPL-MLTAALAQAASDAAERRILHISSGAARNAYAG-------- 146 (243)
T ss_pred CCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHH-HHHHHHHHHhhccCCCEEEEEeChhhcCCCCC--------
Confidence 3689999999975431 122345678899999975 544443 3445579999999887765443
Q ss_pred CCCChhHHHHHHHHHHHHHHcC------CceeEeeeee
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS------NFAILRSSII 177 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v 177 (300)
...|+.+|.++|.+++.+.. ++.+++|+.+
T Consensus 147 --~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~ 182 (243)
T PRK07023 147 --WSVYCATKAALDHHARAVALDANRALRIVSLAPGVV 182 (243)
T ss_pred --chHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCcc
Confidence 67899999999999987653 3445565554
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=146.15 Aligned_cols=220 Identities=14% Similarity=0.073 Sum_probs=141.2
Q ss_pred CCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCC---CchhhhhhcC-CCceeEEEeecCCchhHHHHHH---
Q 022280 2 SKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHST---PLPQLLLDAL-PHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 2 ~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~---~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
.+|+++||||+ +.||.+++++|+++| ++|++.+|+. +....+.++. +.++.++++|++|+++++.+++
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAG---AKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC---CEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence 46899999997 899999999999999 8999887753 2334444443 3456678999999998766654
Q ss_pred -hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
.++++|++|||||.... ..+.+.+...+++|+.+.+ .+.+++.. ...++||++||....-+.+.
T Consensus 83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~---- 157 (257)
T PRK08594 83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLT-AVAREAKKLMTEGGSIVTLTYLGGERVVQN---- 157 (257)
T ss_pred HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHH-HHHHHHHHhcccCceEEEEcccCCccCCCC----
Confidence 46789999999997531 1122234567889998875 55555443 12358999999765433222
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+++.+.+.++.+ +..+.|+.+-.+.... .+ .. .... ...... .....
T Consensus 158 ------~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~-~~-~~-~~~~-~~~~~~-------~p~~r 220 (257)
T PRK08594 158 ------YNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKG-VG-GF-NSIL-KEIEER-------APLRR 220 (257)
T ss_pred ------CchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhh-hc-cc-cHHH-HHHhhc-------CCccc
Confidence 568999999999999877543 4456666554321000 00 00 0000 001000 12335
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
+..++|+++++++++...... ..+.++.+.+|
T Consensus 221 ~~~p~~va~~~~~l~s~~~~~--~tG~~~~~dgg 252 (257)
T PRK08594 221 TTTQEEVGDTAAFLFSDLSRG--VTGENIHVDSG 252 (257)
T ss_pred cCCHHHHHHHHHHHcCccccc--ccceEEEECCc
Confidence 678999999999999753221 11226777665
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=145.97 Aligned_cols=226 Identities=14% Similarity=0.131 Sum_probs=145.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHh---cC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALK---FG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~---~~ 75 (300)
|+|+++|||| |+||+++++.|. +| ++|++++|+.+......+++ +..+.++++|++|.++++.+++. ++
T Consensus 1 ~~k~~lItGa-~gIG~~la~~l~-~G---~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 1 MKEVVVVIGA-GGIGQAIARRVG-AG---KKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred CCCEEEEECC-ChHHHHHHHHHh-CC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 4678999997 799999999996 78 89999999865544443322 33567789999999987777654 46
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCC------CC---CCCCC-
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVK------SF---YKEED- 143 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~------~~---~~E~~- 143 (300)
++|+||||||.... ...++.++++|+.+++ .+++.+... ..+++|++||........ .. ++.++
T Consensus 76 ~id~li~nAG~~~~---~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (275)
T PRK06940 76 PVTGLVHTAGVSPS---QASPEAILKVDLYGTA-LVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEEL 151 (275)
T ss_pred CCCEEEECCCcCCc---hhhHHHHHHHhhHHHH-HHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccc
Confidence 89999999997532 2467889999999996 877776652 224678888865433210 00 01110
Q ss_pred -------C---CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCcee
Q 022280 144 -------E---IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVE 206 (300)
Q Consensus 144 -------~---~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (300)
+ ..+...|+.||++.+.+.+.++. ++..+.||.+..+-........ ......... ..
T Consensus 152 ~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~-~~~~~~~~~-~~---- 225 (275)
T PRK06940 152 LSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGP-RGDGYRNMF-AK---- 225 (275)
T ss_pred cccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCC-chHHHHHHh-hh----
Confidence 0 02356899999999988876543 3566778777554211100000 001111111 11
Q ss_pred eccCcccCceeHHHHHHHHHHHHhccc--cccccccceeeecCCC
Q 022280 207 FFHDECRCPVYVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPD 249 (300)
Q Consensus 207 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~ 249 (300)
.....+..++|+|+++.+++.... ..|+ ++.+.+|.
T Consensus 226 ---~p~~r~~~peeia~~~~fL~s~~~~~itG~----~i~vdgg~ 263 (275)
T PRK06940 226 ---SPAGRPGTPDEIAALAEFLMGPRGSFITGS----DFLVDGGA 263 (275)
T ss_pred ---CCcccCCCHHHHHHHHHHHcCcccCcccCc----eEEEcCCe
Confidence 112357889999999999986422 2333 67776664
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-18 Score=143.45 Aligned_cols=215 Identities=15% Similarity=0.118 Sum_probs=140.5
Q ss_pred CCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCC-----------Cchhhhh---hcCCCceeEEEeecCCch
Q 022280 2 SKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHST-----------PLPQLLL---DALPHSFVFFDVDLKSGS 65 (300)
Q Consensus 2 ~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~-----------~~~~~~~---~~~~~~~~~~~~D~~~~~ 65 (300)
.++++|||||+| +||++++++|+++| ++|+++.|+. +....+. ...+..+.++++|++|.+
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~ 81 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAG---ADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQND 81 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCC---CeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 468999999995 89999999999999 8888865321 0111111 122445677899999999
Q ss_pred hHHHHHH----hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHH----HHhhhhccCCeEEEeecccccc
Q 022280 66 GFDAVAL----KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYE 133 (300)
Q Consensus 66 ~~~~~~~----~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~ 133 (300)
++.+++. .++++|+|||+||..... .+.+.++..+++|+.+.+ .+ +..+++.+.++||++||.....
T Consensus 82 ~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~ 160 (256)
T PRK12859 82 APKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATT-LLSSQFARGFDKKSGGRIINMTSGQFQG 160 (256)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhhcCCeEEEEEcccccCC
Confidence 8776664 356799999999975432 223345677999999986 55 3444444456999999987654
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCcee
Q 022280 134 GVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVE 206 (300)
Q Consensus 134 ~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (300)
+... ...|+.+|.+++.+.++++. ++..++|+.+-.+... .. ....+....
T Consensus 161 ~~~~----------~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~--------~~-~~~~~~~~~--- 218 (256)
T PRK12859 161 PMVG----------ELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMT--------EE-IKQGLLPMF--- 218 (256)
T ss_pred CCCC----------chHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCC--------HH-HHHHHHhcC---
Confidence 4332 67899999999999877653 4566787776433110 11 111111111
Q ss_pred eccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 207 FFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 207 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
....+..++|+++++.+++..... ...++++.+.+|
T Consensus 219 ----~~~~~~~~~d~a~~~~~l~s~~~~--~~~G~~i~~dgg 254 (256)
T PRK12859 219 ----PFGRIGEPKDAARLIKFLASEEAE--WITGQIIHSEGG 254 (256)
T ss_pred ----CCCCCcCHHHHHHHHHHHhCcccc--CccCcEEEeCCC
Confidence 122456799999999998865321 111336666654
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=144.31 Aligned_cols=220 Identities=16% Similarity=0.166 Sum_probs=142.1
Q ss_pred CCCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCCCc---hhhhhhcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTPL---PQLLLDALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|.+|+++||||+ +.||.+++++|+++| ++|++++|+.+. ...+.+..+ ...++++|++|.++++.+++
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G---~~v~l~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~ 83 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALG---AELAVTYLNDKARPYVEPLAEELD-APIFLPLDVREPGQLEAVFARIA 83 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC---CEEEEEeCChhhHHHHHHHHHhhc-cceEEecCcCCHHHHHHHHHHHH
Confidence 356899999998 599999999999999 899998887532 233333332 24468999999998766654
Q ss_pred -hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
+++++|++|||||.... +.+.+.++..+++|+.+.+ .+.+.+.. ...+++|++||.....+.+.
T Consensus 84 ~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~-~~~~~~~p~m~~~g~Ii~iss~~~~~~~~~---- 158 (258)
T PRK07533 84 EEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFI-RMARLAEPLMTNGGSLLTMSYYGAEKVVEN---- 158 (258)
T ss_pred HHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHH-HHHHHHHHHhccCCEEEEEeccccccCCcc----
Confidence 45789999999997532 1123456788999999996 66665543 12258999998654332222
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+++.+.+.++. ++..+.|+.+-.+-... .. .. ..+..... .. .....
T Consensus 159 ------~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~-~~-~~-~~~~~~~~-~~-------~p~~r 221 (258)
T PRK07533 159 ------YNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASG-ID-DF-DALLEDAA-ER-------APLRR 221 (258)
T ss_pred ------chhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhc-cC-Cc-HHHHHHHH-hc-------CCcCC
Confidence 56899999999998887654 34556666654321100 00 00 11111111 11 12235
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
+..++|++.++++++..... ...+.++.+.++
T Consensus 222 ~~~p~dva~~~~~L~s~~~~--~itG~~i~vdgg 253 (258)
T PRK07533 222 LVDIDDVGAVAAFLASDAAR--RLTGNTLYIDGG 253 (258)
T ss_pred CCCHHHHHHHHHHHhChhhc--cccCcEEeeCCc
Confidence 77899999999999875311 111236666665
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=143.66 Aligned_cols=199 Identities=16% Similarity=0.121 Sum_probs=137.7
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhhhc---CCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
||||||+|+||.++++.|+++| ++|+++.|+.+ ....+.+. .+.++.++.+|++|.+++..+++ .++++
T Consensus 1 vlItGas~giG~~~a~~l~~~G---~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 77 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADG---FEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAY 77 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999 88988887643 23333322 24567889999999998766554 35689
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh-----hccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT-----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
|++||+||..... ...+.++..+++|+.+++ .+++++. +.+.+++|++||...+.+.+. .
T Consensus 78 ~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~----------~ 146 (239)
T TIGR01831 78 YGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFY-NVIHPCTMPMIRARQGGRIITLASVSGVMGNRG----------Q 146 (239)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhhcCCeEEEEEcchhhccCCCC----------C
Confidence 9999999975432 123456778999999996 7776542 234569999999765444322 5
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.+|.+.+.+.+.++. ++..++|+.+..+.... .. ....... ..- +...+..++|+
T Consensus 147 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----~~-~~~~~~~-~~~-------~~~~~~~~~~v 212 (239)
T TIGR01831 147 VNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAE-----VE-HDLDEAL-KTV-------PMNRMGQPAEV 212 (239)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchh-----hh-HHHHHHH-hcC-------CCCCCCCHHHH
Confidence 6899999999888776543 45668888876553211 11 1111111 111 22346789999
Q ss_pred HHHHHHHHhcc
Q 022280 222 VKIILALTNRW 232 (300)
Q Consensus 222 a~~~~~~~~~~ 232 (300)
++++.+++...
T Consensus 213 a~~~~~l~~~~ 223 (239)
T TIGR01831 213 ASLAGFLMSDG 223 (239)
T ss_pred HHHHHHHcCch
Confidence 99999999863
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-19 Score=149.47 Aligned_cols=205 Identities=14% Similarity=0.098 Sum_probs=138.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CC-ceeEEEeecCCchhHHHHHH----hcC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PH-SFVFFDVDLKSGSGFDAVAL----KFG 75 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~~~~~~~----~~~ 75 (300)
|+++||||+|+||.++++.|+++| ++|++++|+++......+.+ +. ...++.+|++|++++..+++ .++
T Consensus 1 k~vlItGas~giG~~la~~la~~G---~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG---AELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHG 77 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999 88999998865544433222 22 23457899999988666554 356
Q ss_pred CCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----c-cCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----N-KENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~-~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++|+|||+||...... ..+.++..+++|+.+++ .+++++.. . ..++||++||...+.+.+.
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~--------- 147 (272)
T PRK07832 78 SMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPI-HVIETFVPPMVAAGRGGHLVNVSSAAGLVALPW--------- 147 (272)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCCcEEEEEccccccCCCCC---------
Confidence 7999999999754321 23345678999999996 77777542 2 2359999999765443322
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCC--chHHHHHHHHhcCCceeeccCcccCcee
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKS--LPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.+|.+.+.+.+.+. .++++++|+.+.++......... .......... .......+.
T Consensus 148 -~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 217 (272)
T PRK07832 148 -HAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWV---------DRFRGHAVT 217 (272)
T ss_pred -CcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHH---------HhcccCCCC
Confidence 5679999998888776543 35688999998876421100000 0000000000 001123578
Q ss_pred HHHHHHHHHHHHhc
Q 022280 218 VRDVVKIILALTNR 231 (300)
Q Consensus 218 v~D~a~~~~~~~~~ 231 (300)
++|+|+.+++++.+
T Consensus 218 ~~~vA~~~~~~~~~ 231 (272)
T PRK07832 218 PEKAAEKILAGVEK 231 (272)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999975
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-18 Score=143.33 Aligned_cols=212 Identities=18% Similarity=0.173 Sum_probs=155.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+||||||||++|++++++|+++| ++|++..|+++....+. ..+.+..+|+.+++++...++ +.|.++++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~r~~~~~~~~~----~~v~~~~~d~~~~~~l~~a~~---G~~~~~~i 70 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG---HEVRAAVRNPEAAAALA----GGVEVVLGDLRDPKSLVAGAK---GVDGVLLI 70 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC---CEEEEEEeCHHHHHhhc----CCcEEEEeccCCHhHHHHHhc---cccEEEEE
Confidence 579999999999999999999999 89999999987776655 567778999999988887777 99999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY 163 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~ 163 (300)
.+... .. . ........... +..+++. .++++++++|+....... ...|..+|..+|+.+.
T Consensus 71 ~~~~~-~~---~--~~~~~~~~~~~-~~a~~a~-~~~~~~~~~s~~~~~~~~------------~~~~~~~~~~~e~~l~ 130 (275)
T COG0702 71 SGLLD-GS---D--AFRAVQVTAVV-RAAEAAG-AGVKHGVSLSVLGADAAS------------PSALARAKAAVEAALR 130 (275)
T ss_pred ecccc-cc---c--chhHHHHHHHH-HHHHHhc-CCceEEEEeccCCCCCCC------------ccHHHHHHHHHHHHHH
Confidence 87553 21 1 11111111111 3333333 446788888876654322 5689999999999999
Q ss_pred HHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccccccccccee
Q 022280 164 EKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243 (300)
Q Consensus 164 ~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ 243 (300)
+.+.+++++|+..+|..... .+.......+.+....+....+++..+|++.++..++..+...++ +|
T Consensus 131 ~sg~~~t~lr~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~d~a~~~~~~l~~~~~~~~----~~ 197 (275)
T COG0702 131 SSGIPYTTLRRAAFYLGAGA---------AFIEAAEAAGLPVIPRGIGRLSPIAVDDVAEALAAALDAPATAGR----TY 197 (275)
T ss_pred hcCCCeEEEecCeeeeccch---------hHHHHHHhhCCceecCCCCceeeeEHHHHHHHHHHHhcCCcccCc----EE
Confidence 99999999997666644321 112233323444444444567899999999999999988654444 99
Q ss_pred eecCCCccCHHHHHH
Q 022280 244 NVGGPDRVSRVQMAE 258 (300)
Q Consensus 244 ni~~~~~~s~~e~~~ 258 (300)
.+.+++..+..++++
T Consensus 198 ~l~g~~~~~~~~~~~ 212 (275)
T COG0702 198 ELAGPEALTLAELAS 212 (275)
T ss_pred EccCCceecHHHHHH
Confidence 999998999999888
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=162.52 Aligned_cols=164 Identities=18% Similarity=0.222 Sum_probs=125.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
.++++|||||+|+||++++++|+++| ++|++++|+.+....+... .+..+.++.+|++|++++.++++. +
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREG---AEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999 8999999986555444332 234677889999999987776654 5
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hcc-CCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENK-ENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|+||||||...... ..+.++..+++|+.|++ ++.+++. +.+ .++||++||...|.+...
T Consensus 391 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-------- 461 (582)
T PRK05855 391 GVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVI-HGCRLFGRQMVERGTGGHIVNVASAAAYAPSRS-------- 461 (582)
T ss_pred CCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCcEEEEECChhhccCCCC--------
Confidence 67999999999864321 23345678899999996 7666543 334 259999999998876544
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeC
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYG 179 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G 179 (300)
...|+.||.+++.+.+.++. ++++++|+.|-.
T Consensus 462 --~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t 500 (582)
T PRK05855 462 --LPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDT 500 (582)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcc
Confidence 67899999999988876543 467778877744
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-18 Score=142.97 Aligned_cols=221 Identities=16% Similarity=0.147 Sum_probs=141.5
Q ss_pred CCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCCC--chhhhhhcC---CCceeEEEeecCCchhHHHHHH--
Q 022280 2 SKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTP--LPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL-- 72 (300)
Q Consensus 2 ~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~--~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~-- 72 (300)
++++++||||+ +.||++++++|+++| ++|++..|+.+ +.....+++ .....++++|++|+++++++++
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAG---AELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCC---CEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 46899999986 899999999999999 88888766533 112222111 2235568999999998776654
Q ss_pred --hcCCCCEEEEcccccCc-----c---ccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCC
Q 022280 73 --KFGQPDVVVNCAALSVP-----R---VCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 73 --~~~~~d~vih~a~~~~~-----~---~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
+++++|++|||||.... . .+.+.++..+++|+.+++ .+.+.+.. ...++||++||.....+.+.
T Consensus 82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~-~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~--- 157 (258)
T PRK07370 82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLA-PLCKAAKPLMSEGGSIVTLTYLGGVRAIPN--- 157 (258)
T ss_pred HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHH-HHHHHHHHHHhhCCeEEEEeccccccCCcc---
Confidence 45789999999997531 1 123345788999999986 66665543 12259999999765433222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+.+.+.+.++.+ +..+.|+.+-.+-... .. .. ...... .... ....
T Consensus 158 -------~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~-~~-~~-~~~~~~-~~~~-------~p~~ 219 (258)
T PRK07370 158 -------YNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSA-VG-GI-LDMIHH-VEEK-------APLR 219 (258)
T ss_pred -------cchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhc-cc-cc-hhhhhh-hhhc-------CCcC
Confidence 568999999999999877643 4556676664331100 00 00 011111 1010 1233
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+..++|++.++.+++...... ..++++.+.+|.
T Consensus 220 r~~~~~dva~~~~fl~s~~~~~--~tG~~i~vdgg~ 253 (258)
T PRK07370 220 RTVTQTEVGNTAAFLLSDLASG--ITGQTIYVDAGY 253 (258)
T ss_pred cCCCHHHHHHHHHHHhChhhcc--ccCcEEEECCcc
Confidence 5778999999999999753211 112366666653
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=146.32 Aligned_cols=221 Identities=13% Similarity=0.056 Sum_probs=141.0
Q ss_pred CCCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCCC---chhhhhhcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHSTP---LPQLLLDALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|.+|+++||||++ .||.++++.|+++| ++|++.+|+.. ....+....+. ..++++|++|+++++++++
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G---~~v~~~~r~~~~~~~~~~l~~~~g~-~~~~~~Dv~~~~~v~~~~~~~~ 81 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHG---AELWFTYQSEVLEKRVKPLAEEIGC-NFVSELDVTNPKSISNLFDDIK 81 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcC---CEEEEEeCchHHHHHHHHHHHhcCC-ceEEEccCCCHHHHHHHHHHHH
Confidence 4568999999997 89999999999999 88998887632 12222222222 2347899999998766664
Q ss_pred -hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
+++++|++||+|+.... +.+.+.++..+++|+.+.+ .+++++.. ..-++||++||.....+.+.
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~-~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~---- 156 (260)
T PRK06603 82 EKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLL-ELSRSAEALMHDGGSIVTLTYYGAEKVIPN---- 156 (260)
T ss_pred HHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHH-HHHHHHHhhhccCceEEEEecCccccCCCc----
Confidence 46789999999997431 1123456778999999986 66665432 12259999999765433222
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+++.+.+.++.+ +..+.|+.+-.+.... .+ . ......... .. .....
T Consensus 157 ------~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~-~-~~~~~~~~~-~~-------~p~~r 219 (260)
T PRK06603 157 ------YNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSA-IG-D-FSTMLKSHA-AT-------APLKR 219 (260)
T ss_pred ------ccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhc-CC-C-cHHHHHHHH-hc-------CCcCC
Confidence 568999999999998876643 3456666553321000 00 0 011111111 11 12335
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+..++|+++++++++...... ..+..+.+.+|.
T Consensus 220 ~~~pedva~~~~~L~s~~~~~--itG~~i~vdgG~ 252 (260)
T PRK06603 220 NTTQEDVGGAAVYLFSELSKG--VTGEIHYVDCGY 252 (260)
T ss_pred CCCHHHHHHHHHHHhCccccc--CcceEEEeCCcc
Confidence 678999999999999753211 112367776663
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=146.10 Aligned_cols=221 Identities=16% Similarity=0.116 Sum_probs=139.9
Q ss_pred CCCCeEEEEcC--CccchHHHHHhhhhccCCCceeeecCCCCCc---hhhhhhcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGG--TGYLGQHLLQGLSEIEGKPYDVAATHHSTPL---PQLLLDALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGa--tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|++++++|||| ++.||++++++|+++| ++|++..|+... ...+....+ ....+++|++|+++++.+++
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~ 79 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQG---AELAFTYVVDKLEERVRKMAAELD-SELVFRCDVASDDEINQVFADLG 79 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEcCcHHHHHHHHHHHhccC-CceEEECCCCCHHHHHHHHHHHH
Confidence 35689999997 6799999999999999 889888775321 222222222 23468999999998776654
Q ss_pred -hcCCCCEEEEcccccCcc---------ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVPR---------VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFY 139 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~~---------~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~ 139 (300)
+++++|++|||||+.... ...+.++..+++|+.+.+ .+.+.+.. .+.++||++||.....+.+.
T Consensus 80 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~-~l~~~~~p~m~~~~g~Iv~iss~~~~~~~~~-- 156 (261)
T PRK08690 80 KHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLP-ALAKAARPMMRGRNSAIVALSYLGAVRAIPN-- 156 (261)
T ss_pred HHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHH-HHHHHHHHHhhhcCcEEEEEcccccccCCCC--
Confidence 467899999999986421 111234566789998875 55554332 22358999999776543322
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.||.+.+.+.+.++. ++..+.|+.+--+-... .. -......... .. .+.
T Consensus 157 --------~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~-~~--~~~~~~~~~~-~~-------~p~ 217 (261)
T PRK08690 157 --------YNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASG-IA--DFGKLLGHVA-AH-------NPL 217 (261)
T ss_pred --------cccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhc-CC--chHHHHHHHh-hc-------CCC
Confidence 56899999999998887653 34556666654321100 00 0011111111 11 123
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
..+..++|+|+++.+++...... ..+.++-+.+|.
T Consensus 218 ~r~~~peevA~~v~~l~s~~~~~--~tG~~i~vdgG~ 252 (261)
T PRK08690 218 RRNVTIEEVGNTAAFLLSDLSSG--ITGEITYVDGGY 252 (261)
T ss_pred CCCCCHHHHHHHHHHHhCcccCC--cceeEEEEcCCc
Confidence 45788999999999999853221 112367776664
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-18 Score=142.65 Aligned_cols=221 Identities=17% Similarity=0.120 Sum_probs=139.0
Q ss_pred CCCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCCC---chhhhhhcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHSTP---LPQLLLDALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|++|+++||||++ .||+++++.|+++| ++|++.+|+.. ..+.+.... .....+.+|++|+++++.+++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G---~~vil~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~ 79 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREG---AELAFTYQNDKLKGRVEEFAAQL-GSDIVLPCDVAEDASIDAMFAELG 79 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCC---CEEEEEecchhHHHHHHHHHhcc-CCceEeecCCCCHHHHHHHHHHHH
Confidence 3568899999985 99999999999999 88988888631 122222222 234568899999998777664
Q ss_pred -hcCCCCEEEEcccccCcc---------ccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVPR---------VCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~~---------~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
.++++|++|||||+.... .+.+.++..+++|+.+.+ .+.+.+.. .+-++||++||.....+.+.
T Consensus 80 ~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~g~Iv~iss~~~~~~~~~--- 155 (262)
T PRK07984 80 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFV-AMAKACRSMLNPGSALLTLSYLGAERAIPN--- 155 (262)
T ss_pred hhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHH-HHHHHHHHHhcCCcEEEEEecCCCCCCCCC---
Confidence 457899999999975321 122345567899999875 55555432 12258999998765433222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+.+.+.+.++.+ +..+-|+.+--+-. ...+ . ....... .... ....
T Consensus 156 -------~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~-~~~~-~-~~~~~~~-~~~~-------~p~~ 217 (262)
T PRK07984 156 -------YNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAA-SGIK-D-FRKMLAH-CEAV-------TPIR 217 (262)
T ss_pred -------cchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHH-hcCC-c-hHHHHHH-HHHc-------CCCc
Confidence 568999999999999877653 33445554432100 0000 0 0011111 1000 1233
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+..++|++.++++++...... ..+.++.+.++.
T Consensus 218 r~~~pedva~~~~~L~s~~~~~--itG~~i~vdgg~ 251 (262)
T PRK07984 218 RTVTIEDVGNSAAFLCSDLSAG--ISGEVVHVDGGF 251 (262)
T ss_pred CCCCHHHHHHHHHHHcCccccc--ccCcEEEECCCc
Confidence 5778999999999999753211 113367776664
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=164.14 Aligned_cols=195 Identities=16% Similarity=0.212 Sum_probs=142.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|.+|+++||||||+||+++++.|+++| ++|++++|+++....+.+.+ +..+.++.+|++|.++++++++ .
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAG---ATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 356899999999999999999999999 89999999866554443322 3467788999999998776665 4
Q ss_pred cCCCCEEEEcccccCccc---c---ccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV---C---ENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~---~---~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
++++|+||||||...... . .+.++..+++|+.|++ .+.++ +++.+.++||++||..++.+...
T Consensus 446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 518 (657)
T PRK07201 446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAV-RLILGLLPHMRERRFGHVVNVSSIGVQTNAPR------ 518 (657)
T ss_pred cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCEEEEECChhhcCCCCC------
Confidence 578999999999753211 1 1245678899999985 55444 45566779999999988876543
Q ss_pred CCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+++.+.+.++ .++++++|+.+..+..... ... .....+
T Consensus 519 ----~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~-----------------~~~-----~~~~~~ 572 (657)
T PRK07201 519 ----FSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPT-----------------KRY-----NNVPTI 572 (657)
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcc-----------------ccc-----cCCCCC
Confidence 6789999999999887654 3567788888865432100 000 011246
Q ss_pred eHHHHHHHHHHHHhc
Q 022280 217 YVRDVVKIILALTNR 231 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~ 231 (300)
.++++|+.++..+..
T Consensus 573 ~~~~~a~~i~~~~~~ 587 (657)
T PRK07201 573 SPEEAADMVVRAIVE 587 (657)
T ss_pred CHHHHHHHHHHHHHh
Confidence 799999999988765
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-18 Score=156.64 Aligned_cols=206 Identities=13% Similarity=0.143 Sum_probs=143.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
.++++|||||+++||.++++.|+++| ++|++++|+.+....+...++..+.++.+|++++++++.+++ .++++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAG---DQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRI 80 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999 899999998777666666555667778999999998766654 35789
Q ss_pred CEEEEcccccCc------cccccChhhhhhcccccchHHHHHhhhh----ccCC-eEEEeeccccccCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVP------RVCENDPDSAMSINVPSSLVNWLSSFTE----NKEN-LLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 78 d~vih~a~~~~~------~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~-~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
|++|||||.... ..+.+.++..+++|+.+++ .+++++.. .+.+ ++|++||.....+...
T Consensus 81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~--------- 150 (520)
T PRK06484 81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAY-LVAREALRLMIEQGHGAAIVNVASGAGLVALPK--------- 150 (520)
T ss_pred CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCCeEEEECCcccCCCCCC---------
Confidence 999999997321 1223456788999999996 66666554 3433 8999999776655433
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.+|.+.+.+.+.++. ++..+.|+.+-.+......... ......... .+ ....+..++
T Consensus 151 -~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~---~~~~~~~~~--~~-----~~~~~~~~~ 219 (520)
T PRK06484 151 -RTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAG---KLDPSAVRS--RI-----PLGRLGRPE 219 (520)
T ss_pred -CchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccc---hhhhHHHHh--cC-----CCCCCcCHH
Confidence 56899999999998887654 3455666665433211000000 000000000 00 122456899
Q ss_pred HHHHHHHHHHhc
Q 022280 220 DVVKIILALTNR 231 (300)
Q Consensus 220 D~a~~~~~~~~~ 231 (300)
|+++++.+++..
T Consensus 220 ~va~~v~~l~~~ 231 (520)
T PRK06484 220 EIAEAVFFLASD 231 (520)
T ss_pred HHHHHHHHHhCc
Confidence 999999998875
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-18 Score=142.33 Aligned_cols=221 Identities=14% Similarity=0.073 Sum_probs=140.6
Q ss_pred CCCCeEEEEcC--CccchHHHHHhhhhccCCCceeeecCCC---CCchhhhhhcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGG--TGYLGQHLLQGLSEIEGKPYDVAATHHS---TPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGa--tG~iG~~l~~~L~~~g~~~~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|++++++|||| ++.||.+++++|+++| ++|++.+|. .+....+.+..+. ...+.+|++|+++++.+++
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~ 79 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREG---AELAFTYVGDRFKDRITEFAAEFGS-DLVFPCDVASDEQIDALFASLG 79 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCC---CeEEEEccchHHHHHHHHHHHhcCC-cceeeccCCCHHHHHHHHHHHH
Confidence 45689999996 6899999999999999 888887654 2223333333332 2357899999998776664
Q ss_pred -hcCCCCEEEEcccccCcc---------ccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVPR---------VCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~~---------~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
+++++|++|||||..... .+.+.++..+++|+.+++ .+.+++.. .+.+++|++||.....+.+.
T Consensus 80 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~-~l~~~~lp~m~~~g~Ii~iss~~~~~~~~~--- 155 (260)
T PRK06997 80 QHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFP-ALAKAALPMLSDDASLLTLSYLGAERVVPN--- 155 (260)
T ss_pred HHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHH-HHHHHHHHhcCCCceEEEEeccccccCCCC---
Confidence 457899999999975321 122345678899999986 66555543 22358999999765433222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+.+.+.+.++. ++..+.|+.+--+-... .. . ....... +... .+..
T Consensus 156 -------~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-~~-~-~~~~~~~-~~~~-------~p~~ 217 (260)
T PRK06997 156 -------YNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASG-IK-D-FGKILDF-VESN-------APLR 217 (260)
T ss_pred -------cchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhcc-cc-c-hhhHHHH-HHhc-------Cccc
Confidence 56799999999999887654 33456666553321100 00 0 0111111 1011 1223
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+..++|+++++.++++.... ...+.++.+.++.
T Consensus 218 r~~~pedva~~~~~l~s~~~~--~itG~~i~vdgg~ 251 (260)
T PRK06997 218 RNVTIEEVGNVAAFLLSDLAS--GVTGEITHVDSGF 251 (260)
T ss_pred ccCCHHHHHHHHHHHhCcccc--CcceeEEEEcCCh
Confidence 567899999999999975321 1113377776654
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=136.87 Aligned_cols=187 Identities=18% Similarity=0.172 Sum_probs=133.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcC--CCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFG--QPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~d~v 80 (300)
|++++||||+|+||+++++.|+++| ++|++++|+++....+... .+.++.+|+++.++++.+.+... ++|+|
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G---~~v~~~~r~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~~d~v 74 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADG---WRVIATARDAAALAALQAL---GAEALALDVADPASVAGLAWKLDGEALDAA 74 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCC---CEEEEEECCHHHHHHHHhc---cceEEEecCCCHHHHHHHHHHhcCCCCCEE
Confidence 5789999999999999999999999 8999999986655544332 35578999999998888765442 59999
Q ss_pred EEcccccCcc------ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccc-cccCCCCCCCCCCCCCCCCh
Q 022280 81 VNCAALSVPR------VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQ-VYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 81 ih~a~~~~~~------~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~-~~~~~~~~~~E~~~~~p~~~ 150 (300)
||++|..... .+.+.++..+++|+.+++ ++++++.. .+.++++++||.. .++.... .+...
T Consensus 75 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------~~~~~ 145 (222)
T PRK06953 75 VYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPM-QLLPILLPLVEAAGGVLAVLSSRMGSIGDATG--------TTGWL 145 (222)
T ss_pred EECCCcccCCCCCcccCCHHHHHHHHhhhhhhHH-HHHHHHHHhhhccCCeEEEEcCcccccccccC--------CCccc
Confidence 9999976321 133456788999999996 88877764 2235799998864 4443211 12246
Q ss_pred hHHHHHHHHHHHHHHcCCc-----eeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHH
Q 022280 151 YGKSKVAAEKFIYEKCSNF-----AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKII 225 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~~~-----~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 225 (300)
|+.+|...+.+++.++.++ ..++|+.+.-+... . ..++..+|.++.+
T Consensus 146 Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~------------------~----------~~~~~~~~~~~~~ 197 (222)
T PRK06953 146 YRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG------------------A----------QAALDPAQSVAGM 197 (222)
T ss_pred cHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC------------------C----------CCCCCHHHHHHHH
Confidence 9999999999999876643 44555554322100 0 1135688888888
Q ss_pred HHHHhcc
Q 022280 226 LALTNRW 232 (300)
Q Consensus 226 ~~~~~~~ 232 (300)
+.++...
T Consensus 198 ~~~~~~~ 204 (222)
T PRK06953 198 RRVIAQA 204 (222)
T ss_pred HHHHHhc
Confidence 8887764
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-18 Score=129.66 Aligned_cols=203 Identities=19% Similarity=0.234 Sum_probs=143.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCC--ceeEEEeecCCchhHHH----HHHhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH--SFVFFDVDLKSGSGFDA----VALKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~----~~~~~~ 75 (300)
+.+.++||||+..||+++++.|.+.| ++|.+.+++....++....++. .-..+.+|++++.++.. ..+.++
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~G---arv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g 89 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKG---ARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLG 89 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcC---cEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999 8999999987777666666644 33348999999987555 445578
Q ss_pred CCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----ccC--CeEEEeeccccccCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NKE--NLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 76 ~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~--~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
.|++++||||++... ...++|++.+.+|+.|.+ ..-+++.+ .+. .+||.+||+-.--.+-+
T Consensus 90 ~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvf-l~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~G-------- 160 (256)
T KOG1200|consen 90 TPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVF-LVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFG-------- 160 (256)
T ss_pred CCcEEEEcCccccccceeeccHHHHHHHHHhhchhhH-HHHHHHHHHHHHhcCCCceEEeehhhhccccccc--------
Confidence 999999999998642 356789999999999985 44444332 222 38999999654333333
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
.+.|+++|.-.--+.+..+ .++.++-|+.|--|- ....++..+.+++ +.- +++.+-..
T Consensus 161 --QtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpM-----T~~mp~~v~~ki~-~~i-------Pmgr~G~~ 225 (256)
T KOG1200|consen 161 --QTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPM-----TEAMPPKVLDKIL-GMI-------PMGRLGEA 225 (256)
T ss_pred --chhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChh-----hhhcCHHHHHHHH-ccC-------CccccCCH
Confidence 6778888876544433332 255667777765442 3334555666555 222 23456679
Q ss_pred HHHHHHHHHHHhc
Q 022280 219 RDVVKIILALTNR 231 (300)
Q Consensus 219 ~D~a~~~~~~~~~ 231 (300)
+|+|..++++...
T Consensus 226 EevA~~V~fLAS~ 238 (256)
T KOG1200|consen 226 EEVANLVLFLASD 238 (256)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999854
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-18 Score=149.27 Aligned_cols=191 Identities=13% Similarity=0.130 Sum_probs=132.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----C-CceeEEEeecCC--chhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----P-HSFVFFDVDLKS--GSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~-~~~~~~~~D~~~--~~~~~~~~~~~~ 75 (300)
+++++||||||+||++++++|+++| ++|++++|++++.+.+.+++ + ..+..+.+|+++ .+.++.+.+.++
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G---~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~ 129 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKG---LNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIE 129 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhc
Confidence 6789999999999999999999999 89999999977665544332 1 346667899985 344555555554
Q ss_pred C--CCEEEEcccccCc------cccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeecccccc-C-CCCCCCC
Q 022280 76 Q--PDVVVNCAALSVP------RVCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYE-G-VKSFYKE 141 (300)
Q Consensus 76 ~--~d~vih~a~~~~~------~~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~-~-~~~~~~E 141 (300)
+ +|++|||||.... +.+.+..+..+++|+.|++ .+.+.+ .+.+.+++|++||...+. + .+.
T Consensus 130 ~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~~p~---- 204 (320)
T PLN02780 130 GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTT-KVTQAVLPGMLKRKKGAIINIGSGAAIVIPSDPL---- 204 (320)
T ss_pred CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHH-HHHHHHHHHHHhcCCcEEEEEechhhccCCCCcc----
Confidence 4 5699999997532 1122334578999999986 666554 345667999999987653 2 122
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+.+.+.+.++. ++..+.|+.+-.+-.. . ....+ -
T Consensus 205 ------~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~---------------~-~~~~~--------~ 254 (320)
T PLN02780 205 ------YAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS---------------I-RRSSF--------L 254 (320)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccc---------------c-cCCCC--------C
Confidence 57899999999998887654 3456777766432110 0 00000 0
Q ss_pred ceeHHHHHHHHHHHHhc
Q 022280 215 PVYVRDVVKIILALTNR 231 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~ 231 (300)
...++++|+.++..+..
T Consensus 255 ~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 255 VPSSDGYARAALRWVGY 271 (320)
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 24689999999988864
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.6e-18 Score=139.43 Aligned_cols=200 Identities=18% Similarity=0.156 Sum_probs=137.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcC-CCCEEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFG-QPDVVVN 82 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~~d~vih 82 (300)
|+++||||+|+||+++++.|+++| ++|++..|+.++...+.+.. .+.++++|++|+++++++++.+. ++|++||
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g---~~v~~~~r~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~ 75 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG---HKVTLVGARRDDLEVAAKEL--DVDAIVCDNTDPASLEEARGLFPHHLDTIVN 75 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHhc--cCcEEecCCCCHHHHHHHHHHHhhcCcEEEE
Confidence 479999999999999999999999 89999999866555444432 35568899999999888877542 6999999
Q ss_pred cccccC----cc-----ccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 83 CAALSV----PR-----VCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 83 ~a~~~~----~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
||+... +. ...+.++..+++|+.+++ .+++++.. ...+++|++||.. .+ ....|
T Consensus 76 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~~~~~~~~~g~Iv~isS~~--~~------------~~~~Y 140 (223)
T PRK05884 76 VPAPSWDAGDPRTYSLADTANAWRNALDATVLSAV-LTVQSVGDHLRSGGSIISVVPEN--PP------------AGSAE 140 (223)
T ss_pred CCCccccCCCCcccchhcCHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCeEEEEecCC--CC------------Ccccc
Confidence 998521 10 023456788999999996 77777654 1235999999865 11 24689
Q ss_pred HHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 152 GKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
+.||.+.+.+.+.++.+ +..+.|+.+..+ .... . ... ....++|++++
T Consensus 141 ~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~-------------~~~~-~-~~~----------p~~~~~~ia~~ 195 (223)
T PRK05884 141 AAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQP-------------GYDG-L-SRT----------PPPVAAEIARL 195 (223)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCch-------------hhhh-c-cCC----------CCCCHHHHHHH
Confidence 99999999999877653 344555554321 0110 0 000 01268999999
Q ss_pred HHHHHhccccccccccceeeecCCCc
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+.+++...... ..+.++.+.+|..
T Consensus 196 ~~~l~s~~~~~--v~G~~i~vdgg~~ 219 (223)
T PRK05884 196 ALFLTTPAARH--ITGQTLHVSHGAL 219 (223)
T ss_pred HHHHcCchhhc--cCCcEEEeCCCee
Confidence 99998753211 1123777776643
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-18 Score=136.63 Aligned_cols=178 Identities=17% Similarity=0.162 Sum_probs=127.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+++||||+|+||.++++.|+++ ++|++.+|+.. .+++|++|.++++.+++.++++|+|||+
T Consensus 1 ~~vlItGas~giG~~la~~l~~~----~~vi~~~r~~~--------------~~~~D~~~~~~~~~~~~~~~~id~lv~~ 62 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR----HEVITAGRSSG--------------DVQVDITDPASIRALFEKVGKVDAVVSA 62 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc----CcEEEEecCCC--------------ceEecCCChHHHHHHHHhcCCCCEEEEC
Confidence 58999999999999999999987 36888888642 2689999999999999888899999999
Q ss_pred ccccCccc----cccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHH
Q 022280 84 AALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVA 157 (300)
Q Consensus 84 a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~ 157 (300)
||...... ..+.++..+++|+.+++ ++.+++.. .+.++|+++||.....+.+. ...|+.+|.+
T Consensus 63 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~g~iv~iss~~~~~~~~~----------~~~Y~~sK~a 131 (199)
T PRK07578 63 AGKVHFAPLAEMTDEDFNVGLQSKLMGQV-NLVLIGQHYLNDGGSFTLTSGILSDEPIPG----------GASAATVNGA 131 (199)
T ss_pred CCCCCCCchhhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCeEEEEcccccCCCCCC----------chHHHHHHHH
Confidence 99754321 23345677899999996 88877664 23358999998765433332 6689999999
Q ss_pred HHHHHHHHcCCc------eeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhc
Q 022280 158 AEKFIYEKCSNF------AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 158 ~e~~~~~~~~~~------~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 231 (300)
.+.+.+.++.++ ..+.|+.+-.+ + .. ....+ ....++.++|+|+++..+++.
T Consensus 132 ~~~~~~~la~e~~~gi~v~~i~Pg~v~t~-------------~-~~---~~~~~-----~~~~~~~~~~~a~~~~~~~~~ 189 (199)
T PRK07578 132 LEGFVKAAALELPRGIRINVVSPTVLTES-------------L-EK---YGPFF-----PGFEPVPAARVALAYVRSVEG 189 (199)
T ss_pred HHHHHHHHHHHccCCeEEEEEcCCcccCc-------------h-hh---hhhcC-----CCCCCCCHHHHHHHHHHHhcc
Confidence 999988765543 33444433110 0 00 00000 112468899999999999986
Q ss_pred c
Q 022280 232 W 232 (300)
Q Consensus 232 ~ 232 (300)
.
T Consensus 190 ~ 190 (199)
T PRK07578 190 A 190 (199)
T ss_pred c
Confidence 4
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=138.33 Aligned_cols=219 Identities=16% Similarity=0.165 Sum_probs=139.5
Q ss_pred CCCeEEEEcC--CccchHHHHHhhhhccCCCceeeecCCCC--CchhhhhhcCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGG--TGYLGQHLLQGLSEIEGKPYDVAATHHST--PLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGa--tG~iG~~l~~~L~~~g~~~~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.+++++|||| ++.||.++++.|+++| ++|++++|+. +..+.+.+.++..+.++.+|++|+++++.+++ .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G---~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 82 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQG---AEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREH 82 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCC---CEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHH
Confidence 3578999999 8999999999999999 8999998764 22344444444556678999999998766654 4
Q ss_pred cCCCCEEEEcccccCc-----c---ccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP-----R---VCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~-----~---~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
++++|++|||||+... . .+.+.++..+++|+.+++ .+.+.+.. ...+++|++||....+.
T Consensus 83 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~-~l~~~~~~~m~~~g~Iv~is~~~~~~~--------- 152 (256)
T PRK07889 83 VDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLK-SLAKALLPLMNEGGSIVGLDFDATVAW--------- 152 (256)
T ss_pred cCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHhcccCceEEEEeecccccC---------
Confidence 5789999999997632 1 122344567899999986 66555543 12258999886432111
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc-Cc
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR-CP 215 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 215 (300)
.....|+.||.+.+.+.+.++.+ +..+.|+.+--+-.. ..+. .... ...+.... ... .+
T Consensus 153 --~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~-~~~~--~~~~-~~~~~~~~-------p~~~~~ 219 (256)
T PRK07889 153 --PAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAK-AIPG--FELL-EEGWDERA-------PLGWDV 219 (256)
T ss_pred --CccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhh-cccC--cHHH-HHHHHhcC-------cccccc
Confidence 11456899999999999877553 344555555332110 0000 0011 11111111 112 46
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
..++|+|+++++++...... ..+.++.+.++
T Consensus 220 ~~p~evA~~v~~l~s~~~~~--~tG~~i~vdgg 250 (256)
T PRK07889 220 KDPTPVARAVVALLSDWFPA--TTGEIVHVDGG 250 (256)
T ss_pred CCHHHHHHHHHHHhCccccc--ccceEEEEcCc
Confidence 78999999999999763221 11236777665
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=138.32 Aligned_cols=163 Identities=15% Similarity=0.190 Sum_probs=117.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
|++++||||+|+||+++++.|+++| ++|++++|+++....+... .++.++.+|++|.++++.+.+.+ +++|+|
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~id~v 75 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERG---WQVTATVRGPQQDTALQAL--PGVHIEKLDMNDPASLDQLLQRLQGQRFDLL 75 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCC---CEEEEEeCCCcchHHHHhc--cccceEEcCCCCHHHHHHHHHHhhcCCCCEE
Confidence 5789999999999999999999999 8999999987665444322 34566889999999888877764 369999
Q ss_pred EEcccccCcc------ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 81 VNCAALSVPR------VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 81 ih~a~~~~~~------~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
||+||..... ...+.....+.+|+.+++ .+++.+.. .+.++++++||........ +..+...|
T Consensus 76 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~-------~~~~~~~Y 147 (225)
T PRK08177 76 FVNAGISGPAHQSAADATAAEIGQLFLTNAIAPI-RLARRLLGQVRPGQGVLAFMSSQLGSVELP-------DGGEMPLY 147 (225)
T ss_pred EEcCcccCCCCCCcccCCHHHHhhheeeeeeHHH-HHHHHHHHhhhhcCCEEEEEccCccccccC-------CCCCccch
Confidence 9999976321 122334567889999986 77776653 2335788888853221110 11234579
Q ss_pred HHHHHHHHHHHHHHcCC-------ceeEeeeeee
Q 022280 152 GKSKVAAEKFIYEKCSN-------FAILRSSIIY 178 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~~-------~~ilR~~~v~ 178 (300)
+.+|.+.+.+++.++.+ +..++|+.+-
T Consensus 148 ~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~ 181 (225)
T PRK08177 148 KASKAALNSMTRSFVAELGEPTLTVLSMHPGWVK 181 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCcee
Confidence 99999999999877543 3456666654
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-18 Score=141.51 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=144.3
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc--hhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|+||||.+|+++++.|++.+ ++|.++.|+++. ...+.. .+++.+++|+.|.+++.++++ ++|.||++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~---~~V~~l~R~~~~~~~~~l~~---~g~~vv~~d~~~~~~l~~al~---g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG---FSVRALVRDPSSDRAQQLQA---LGAEVVEADYDDPESLVAALK---GVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---GCEEEEESSSHHHHHHHHHH---TTTEEEES-TT-HHHHHHHHT---TCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCC---CCcEEEEeccchhhhhhhhc---ccceEeecccCCHHHHHHHHc---CCceEEee
Confidence 7999999999999999999988 899999998632 222222 355678999999988888887 99999998
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY 163 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~ 163 (300)
.+.... .. +... .+++++++++|+++||+.|....+... ....|....-..|...|+.++
T Consensus 72 ~~~~~~-----~~-------~~~~-~~li~Aa~~agVk~~v~ss~~~~~~~~-------~~~~p~~~~~~~k~~ie~~l~ 131 (233)
T PF05368_consen 72 TPPSHP-----SE-------LEQQ-KNLIDAAKAAGVKHFVPSSFGADYDES-------SGSEPEIPHFDQKAEIEEYLR 131 (233)
T ss_dssp SSCSCC-----CH-------HHHH-HHHHHHHHHHT-SEEEESEESSGTTTT-------TTSTTHHHHHHHHHHHHHHHH
T ss_pred cCcchh-----hh-------hhhh-hhHHHhhhccccceEEEEEeccccccc-------ccccccchhhhhhhhhhhhhh
Confidence 764321 00 1111 389999999999999976554444211 112233445578999999999
Q ss_pred HHcCCceeEeeeeeeCCCCCCCCCCCchHHHHH-HHHhcC-CceeeccC--cccCce-eHHHHHHHHHHHHhcccccccc
Q 022280 164 EKCSNFAILRSSIIYGPQTISPVPKSLPIQWID-SVLSKG-EKVEFFHD--ECRCPV-YVRDVVKIILALTNRWLSEDKQ 238 (300)
Q Consensus 164 ~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~i-~v~D~a~~~~~~~~~~~~~~~~ 238 (300)
+.+.+++++|++..+...... +.. ...... ..+.+.++ ....++ +.+|+++++..++..+...+
T Consensus 132 ~~~i~~t~i~~g~f~e~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~~-- 200 (233)
T PF05368_consen 132 ESGIPYTIIRPGFFMENLLPP---------FAPVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKHN-- 200 (233)
T ss_dssp HCTSEBEEEEE-EEHHHHHTT---------THHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGTT--
T ss_pred hccccceeccccchhhhhhhh---------hcccccccccceEEEEccCCCccccccccHHHHHHHHHHHHcChHHhc--
Confidence 999999999999877432100 000 001111 23455543 345665 99999999999999965441
Q ss_pred ccceeeecCCCccCHHHHHH
Q 022280 239 MQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 239 ~~~i~ni~~~~~~s~~e~~~ 258 (300)
.+..+++++ +.+|+.|+++
T Consensus 201 ~~~~~~~~~-~~~t~~eia~ 219 (233)
T PF05368_consen 201 NGKTIFLAG-ETLTYNEIAA 219 (233)
T ss_dssp EEEEEEEGG-GEEEHHHHHH
T ss_pred CCEEEEeCC-CCCCHHHHHH
Confidence 234777766 7899999987
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=144.57 Aligned_cols=219 Identities=15% Similarity=0.098 Sum_probs=138.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHh----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
+++++++||||+++||.++++.|+++|. ++|++++|+.++...+.+.+ +..+.++.+|++|.++++.+++.
T Consensus 1 ~~~k~vlITGas~GIG~aia~~L~~~G~--~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 78 (314)
T TIGR01289 1 QQKPTVIITGASSGLGLYAAKALAATGE--WHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRES 78 (314)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999999993 47888888866554444333 23566788999999987766654
Q ss_pred cCCCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHh----hhhcc--CCeEEEeeccccccCCC-----C
Q 022280 74 FGQPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSS----FTENK--ENLLIHLSTDQVYEGVK-----S 137 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~--~~~~v~~SS~~~~~~~~-----~ 137 (300)
++++|++|||||+.... .+.+.++..+++|+.+++ .+.+. +++.+ .++||++||...+.... .
T Consensus 79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~-~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~ 157 (314)
T TIGR01289 79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHF-LLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPP 157 (314)
T ss_pred CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHH-HHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCC
Confidence 46799999999975321 123345678999999985 55444 43332 36999999987654210 0
Q ss_pred CC------------------CCCCCCCCCChhHHHHHHHHHHHHHHcC--------CceeEeeeeeeCCCCCCCCCCCch
Q 022280 138 FY------------------KEEDEIAPVNVYGKSKVAAEKFIYEKCS--------NFAILRSSIIYGPQTISPVPKSLP 191 (300)
Q Consensus 138 ~~------------------~E~~~~~p~~~Y~~sK~~~e~~~~~~~~--------~~~ilR~~~v~G~~~~~~~~~~~~ 191 (300)
+. .+..+..+...|+.||.+...+.+.+.. .++.++||.|....-..... . .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~-~-~ 235 (314)
T TIGR01289 158 KANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHV-P-L 235 (314)
T ss_pred cccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCccccccc-H-H
Confidence 01 1122234567899999997776655432 34667888774322111000 0 0
Q ss_pred HHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 192 IQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
.......+.. .. ...+..+++.++.++.++...
T Consensus 236 ~~~~~~~~~~---~~-----~~~~~~~~~~a~~l~~~~~~~ 268 (314)
T TIGR01289 236 FRTLFPPFQK---YI-----TKGYVSEEEAGERLAQVVSDP 268 (314)
T ss_pred HHHHHHHHHH---HH-----hccccchhhhhhhhHHhhcCc
Confidence 0001000000 00 012567999999999888764
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=138.55 Aligned_cols=191 Identities=16% Similarity=0.198 Sum_probs=129.4
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---C-CceeEEEeecCCchhHHHHHH----hcC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---P-HSFVFFDVDLKSGSGFDAVAL----KFG 75 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~----~~~ 75 (300)
|+++||||+++||.+++++|+ +| ++|++++|+.++.+.+.+.+ + ..+.++.+|++|+++++.+++ .++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g---~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG---EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC---CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 679999999999999999998 58 89999999876665554433 2 246678999999998776554 357
Q ss_pred CCCEEEEcccccCccc----cccChhhhhhcccccchHHHH----Hhhhhcc-CCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWL----SSFTENK-ENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~----~~~~~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++|++|||||...... ......+.+.+|+.+.+ .++ +.+.+.+ -++||++||...+-+.+.
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~--------- 146 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQV-SMLTVLADELRAQTAPAAIVAFSSIAGWRARRA--------- 146 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHH-HHHHHHHHHHHhcCCCCEEEEEeccccccCCcC---------
Confidence 8999999999764321 12223455677887774 433 3344433 369999999766544322
Q ss_pred CCChhHHHHHHHHHHHHHHcCCc-------eeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCSNF-------AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~~~-------~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+.+.+.+.++.++ ..+.||.+..+- .. ...+.. -...++
T Consensus 147 -~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~-------------~~----~~~~~~-------~~~~pe 201 (246)
T PRK05599 147 -NYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSM-------------TT----GMKPAP-------MSVYPR 201 (246)
T ss_pred -CcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchh-------------hc----CCCCCC-------CCCCHH
Confidence 5689999999999888776532 334444443211 10 000000 024689
Q ss_pred HHHHHHHHHHhccc
Q 022280 220 DVVKIILALTNRWL 233 (300)
Q Consensus 220 D~a~~~~~~~~~~~ 233 (300)
|+|+++++++++..
T Consensus 202 ~~a~~~~~~~~~~~ 215 (246)
T PRK05599 202 DVAAAVVSAITSSK 215 (246)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998843
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=147.89 Aligned_cols=216 Identities=15% Similarity=0.145 Sum_probs=142.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC--chhhhhhcCCCceeEEEeecCCchhHHHHHHh----cC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP--LPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
.++++|||||+|+||..+++.|+++| ++|++++++.. ....+...++ ..++.+|++|.++++.+++. ++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~G---a~vi~~~~~~~~~~l~~~~~~~~--~~~~~~Dv~~~~~~~~~~~~~~~~~g 283 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDG---AHVVCLDVPAAGEALAAVANRVG--GTALALDITAPDAPARIAEHLAERHG 283 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCCccHHHHHHHHHHcC--CeEEEEeCCCHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999 89999888532 2223333322 34678999999887766653 45
Q ss_pred CCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhcc----CCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTENK----ENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~----~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|+|||+||..... ...+.++..+++|+.+++ ++.+++.... .++||++||...+.+...
T Consensus 284 ~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~-~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~~---------- 352 (450)
T PRK08261 284 GLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPL-RITEALLAAGALGDGGRIVGVSSISGIAGNRG---------- 352 (450)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHhhhhcCCCEEEEECChhhcCCCCC----------
Confidence 799999999976432 123345678899999997 8888876532 268999999776544333
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.+|...+.+++.++. .+..+.|+.+--+- ...++. ...+.... + ........++|
T Consensus 353 ~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~-----~~~~~~-~~~~~~~~---~----~~l~~~~~p~d 419 (450)
T PRK08261 353 QTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQM-----TAAIPF-ATREAGRR---M----NSLQQGGLPVD 419 (450)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchh-----hhccch-hHHHHHhh---c----CCcCCCCCHHH
Confidence 67899999988888776643 34566666653211 011111 01111101 0 11223345789
Q ss_pred HHHHHHHHHhccccccccccceeeecCC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
+++++.+++...... ..+.+++++++
T Consensus 420 va~~~~~l~s~~~~~--itG~~i~v~g~ 445 (450)
T PRK08261 420 VAETIAWLASPASGG--VTGNVVRVCGQ 445 (450)
T ss_pred HHHHHHHHhChhhcC--CCCCEEEECCC
Confidence 999999998653221 12337788764
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-17 Score=144.96 Aligned_cols=186 Identities=19% Similarity=0.221 Sum_probs=121.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++|+++||||+|+||++++++|+++| ++|++++|++++...........+..+.+|++|.+++.+.+. ++|++|
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G---~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~---~IDiLI 250 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQG---AKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLE---KVDILI 250 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhC---CCCEEE
Confidence 57899999999999999999999999 899999987654432222212235568899999887666554 899999
Q ss_pred EcccccCc-cccccChhhhhhcccccchHHHHHhhhh----ccC---C-eEEEeeccccccCCCCCCCCCCCCCCCChhH
Q 022280 82 NCAALSVP-RVCENDPDSAMSINVPSSLVNWLSSFTE----NKE---N-LLIHLSTDQVYEGVKSFYKEEDEIAPVNVYG 152 (300)
Q Consensus 82 h~a~~~~~-~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~---~-~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~ 152 (300)
||||.... +.+.+.++..+++|+.|++ .+++++.. .+. + .+|.+|+.. ..+. ....|+
T Consensus 251 nnAGi~~~~~~s~e~~~~~~~vNv~g~i-~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~-~~~~-----------~~~~Y~ 317 (406)
T PRK07424 251 INHGINVHGERTPEAINKSYEVNTFSAW-RLMELFFTTVKTNRDKATKEVWVNTSEAE-VNPA-----------FSPLYE 317 (406)
T ss_pred ECCCcCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCCeEEEEEcccc-ccCC-----------CchHHH
Confidence 99997532 2233356788999999996 77776543 221 2 345554422 1110 134799
Q ss_pred HHHHHHHHHHHHHcCCc-eeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhc
Q 022280 153 KSKVAAEKFIYEKCSNF-AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 153 ~sK~~~e~~~~~~~~~~-~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 231 (300)
.||.+.+.+..-...+. ..+| ..+.||.... . .+ ...+.++|+|+.++.++++
T Consensus 318 ASKaAl~~l~~l~~~~~~~~I~-~i~~gp~~t~-~----------------~~--------~~~~spe~vA~~il~~i~~ 371 (406)
T PRK07424 318 LSKRALGDLVTLRRLDAPCVVR-KLILGPFKSN-L----------------NP--------IGVMSADWVAKQILKLAKR 371 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCceE-EEEeCCCcCC-C----------------Cc--------CCCCCHHHHHHHHHHHHHC
Confidence 99999988653221111 1222 2333443210 0 00 1136799999999999988
Q ss_pred c
Q 022280 232 W 232 (300)
Q Consensus 232 ~ 232 (300)
+
T Consensus 372 ~ 372 (406)
T PRK07424 372 D 372 (406)
T ss_pred C
Confidence 4
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-18 Score=135.34 Aligned_cols=152 Identities=19% Similarity=0.272 Sum_probs=119.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC--CCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----c
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS--TPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~--~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
|+++||||++.||..+++.|+++|. +.|++..|+ .+....+... ....+.++++|++++++++.+++. +
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~--~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA--RVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc--eEEEEeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999999964 688888888 3334444322 246788899999999987776654 4
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
+.+|++|||||...... ..+..+..+++|+.+.+ .+.+++...+.++||++||.....+.+. ...
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~g~iv~~sS~~~~~~~~~----------~~~ 147 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPF-LLAKALLPQGGGKIVNISSIAGVRGSPG----------MSA 147 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHH-HHHHHHHHHTTEEEEEEEEGGGTSSSTT----------BHH
T ss_pred ccccccccccccccccccccccchhhhhccccccceee-eeeehheeccccceEEecchhhccCCCC----------Chh
Confidence 68999999999876332 22345678999999996 8888877766679999999887766554 679
Q ss_pred hHHHHHHHHHHHHHHcCC
Q 022280 151 YGKSKVAAEKFIYEKCSN 168 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~~ 168 (300)
|+.+|.+++.+++.++.+
T Consensus 148 Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 148 YSASKAALRGLTQSLAAE 165 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999887654
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-17 Score=134.65 Aligned_cols=203 Identities=15% Similarity=0.160 Sum_probs=141.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC--CceeEEEeecCCchhHHHHH----HhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLKSGSGFDAVA----LKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~----~~~~ 75 (300)
.++.||||||++++|+.++.+++++| .++++.+.+.+...+..+... +.+..+.+|+++++++.... +..|
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg---~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG---AKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC---CeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999 788888888766554443332 36778999999999866554 3468
Q ss_pred CCCEEEEcccccCcccc----ccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRVC----ENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
.+|++||+||+...... .+.-+..+++|+.|.+. +++..+.+.+-+++|.++|...+-+... .
T Consensus 114 ~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~g----------l 183 (300)
T KOG1201|consen 114 DVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAG----------L 183 (300)
T ss_pred CceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCcc----------c
Confidence 89999999998765332 22345789999998853 5677777777789999999887666554 6
Q ss_pred ChhHHHHHHHHHHHHHHcCCc-----eeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCSNF-----AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~-----~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 223 (300)
..|..||.++.-+.+++..|. --++.+.++ |.-.. .+++.. ..+... ....+.++.+|+
T Consensus 184 ~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~-P~~i~-------Tgmf~~---~~~~~~-----l~P~L~p~~va~ 247 (300)
T KOG1201|consen 184 ADYCASKFAAVGFHESLSMELRALGKDGIKTTLVC-PYFIN-------TGMFDG---ATPFPT-----LAPLLEPEYVAK 247 (300)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEe-eeecc-------ccccCC---CCCCcc-----ccCCCCHHHHHH
Confidence 789999999988877665321 113333332 11100 011111 001111 223578999999
Q ss_pred HHHHHHhccc
Q 022280 224 IILALTNRWL 233 (300)
Q Consensus 224 ~~~~~~~~~~ 233 (300)
.++.+++.+.
T Consensus 248 ~Iv~ai~~n~ 257 (300)
T KOG1201|consen 248 RIVEAILTNQ 257 (300)
T ss_pred HHHHHHHcCC
Confidence 9998888743
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=133.08 Aligned_cols=194 Identities=16% Similarity=0.183 Sum_probs=128.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|+||||+|+||++++++|+++|.. +.|+...|+.... . ....+.++++|+++.++++.+.++++++|+||||
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~-~~v~~~~~~~~~~--~---~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~ 74 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPD-ATVHATYRHHKPD--F---QHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINC 74 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCC-CEEEEEccCCccc--c---ccCceEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence 58999999999999999999999643 5666666653321 1 1245677899999999988888888899999999
Q ss_pred ccccCccc----------cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 84 AALSVPRV----------CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 84 a~~~~~~~----------~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
||...... ..+.+...+.+|+.+.+ .+.+.+. +.+.++++++||... ... +. +..+..
T Consensus 75 aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~-~~~~~~~~~~~~~~~~~i~~iss~~~--~~~----~~-~~~~~~ 146 (235)
T PRK09009 75 VGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSL-LLAKHFTPKLKQSESAKFAVISAKVG--SIS----DN-RLGGWY 146 (235)
T ss_pred CccccccccCcccccccCCHHHHHHHHHHHhHHHH-HHHHHHHhhccccCCceEEEEeeccc--ccc----cC-CCCCcc
Confidence 99864210 11223467889998885 5554443 344568999987432 110 00 112356
Q ss_pred hhHHHHHHHHHHHHHHcCC---------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 150 VYGKSKVAAEKFIYEKCSN---------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~~---------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
.|+.+|.+++.+++.++.+ +..+.|+.+-.+... .+. .. .....++.++|
T Consensus 147 ~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~---------~~~-----~~-------~~~~~~~~~~~ 205 (235)
T PRK09009 147 SYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSK---------PFQ-----QN-------VPKGKLFTPEY 205 (235)
T ss_pred hhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCc---------chh-----hc-------cccCCCCCHHH
Confidence 8999999999999876643 233445544332110 000 00 11234678999
Q ss_pred HHHHHHHHHhcc
Q 022280 221 VVKIILALTNRW 232 (300)
Q Consensus 221 ~a~~~~~~~~~~ 232 (300)
+++.+++++...
T Consensus 206 ~a~~~~~l~~~~ 217 (235)
T PRK09009 206 VAQCLLGIIANA 217 (235)
T ss_pred HHHHHHHHHHcC
Confidence 999999999874
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=138.71 Aligned_cols=200 Identities=14% Similarity=0.107 Sum_probs=131.8
Q ss_pred eEEEEcCCccchHHHHHhhhh----ccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHHhc-
Q 022280 5 RVLVVGGTGYLGQHLLQGLSE----IEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVALKF- 74 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~----~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~- 74 (300)
.++||||+++||.+++++|++ .| ++|+++.|+.+....+.+.+ +..+.++.+|++|+++++.+++..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g---~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~ 78 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG---SVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALR 78 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC---cEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHH
Confidence 689999999999999999997 68 89999999876655544332 235677899999999877766432
Q ss_pred ---CC----CCEEEEcccccCcc---c----cccChhhhhhcccccchHHHHHhhh----hc-c-CCeEEEeeccccccC
Q 022280 75 ---GQ----PDVVVNCAALSVPR---V----CENDPDSAMSINVPSSLVNWLSSFT----EN-K-ENLLIHLSTDQVYEG 134 (300)
Q Consensus 75 ---~~----~d~vih~a~~~~~~---~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~-~-~~~~v~~SS~~~~~~ 134 (300)
+. .|+||||||..... . ..+.++..+++|+.+++ .+.+.+. +. + .++||++||...+.+
T Consensus 79 ~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~-~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~ 157 (256)
T TIGR01500 79 ELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSML-CLTSSVLKAFKDSPGLNRTVVNISSLCAIQP 157 (256)
T ss_pred hccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHH-HHHHHHHHHHhhcCCCCCEEEEECCHHhCCC
Confidence 21 36999999974321 1 12345678999999986 5544433 32 2 258999999876554
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhc-CCce-
Q 022280 135 VKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSK-GEKV- 205 (300)
Q Consensus 135 ~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~- 205 (300)
.+. ...|+.||.+.+.+.+.++.+ +..+.||.+-.+. ....... ..+.
T Consensus 158 ~~~----------~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~-------------~~~~~~~~~~~~~ 214 (256)
T TIGR01500 158 FKG----------WALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDM-------------QQQVREESVDPDM 214 (256)
T ss_pred CCC----------chHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchH-------------HHHHHHhcCChhH
Confidence 333 568999999999999877543 2334455443211 1110000 0000
Q ss_pred -eec-c-CcccCceeHHHHHHHHHHHHhc
Q 022280 206 -EFF-H-DECRCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 206 -~~~-~-~~~~~~i~v~D~a~~~~~~~~~ 231 (300)
... . .....+..++|+|..+++++++
T Consensus 215 ~~~~~~~~~~~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 215 RKGLQELKAKGKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Confidence 000 0 1233578899999999999964
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=134.26 Aligned_cols=142 Identities=17% Similarity=0.157 Sum_probs=97.4
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++++++||||+|+||++++++|+++| ++|++++|++........ ......+.+|++|.+++.+. ++++|++
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G---~~Vi~~~r~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~---~~~iDil 83 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKG---AKVIGLTHSKINNSESND--ESPNEWIKWECGKEESLDKQ---LASLDVL 83 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEECCchhhhhhhc--cCCCeEEEeeCCCHHHHHHh---cCCCCEE
Confidence 356899999999999999999999999 899998887522111111 11124578999998776544 4589999
Q ss_pred EEcccccCcc-ccccChhhhhhcccccchHHHHHhhhhc-------cCCeEEEeeccccccCCCCCCCCCCCCCCCChhH
Q 022280 81 VNCAALSVPR-VCENDPDSAMSINVPSSLVNWLSSFTEN-------KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYG 152 (300)
Q Consensus 81 ih~a~~~~~~-~~~~~~~~~~~~nv~~~~~~l~~~~~~~-------~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~ 152 (300)
|||||..... .+.++++..+++|+.+++ .+++++... +.+.++..||.....+. ....|+
T Consensus 84 VnnAG~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~~-----------~~~~Y~ 151 (245)
T PRK12367 84 ILNHGINPGGRQDPENINKALEINALSSW-RLLELFEDIALNNNSQIPKEIWVNTSEAEIQPA-----------LSPSYE 151 (245)
T ss_pred EECCccCCcCCCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcccCCCeEEEEEecccccCCC-----------CCchhH
Confidence 9999975332 234467788999999996 777765441 12234444554333221 145799
Q ss_pred HHHHHHHHHH
Q 022280 153 KSKVAAEKFI 162 (300)
Q Consensus 153 ~sK~~~e~~~ 162 (300)
.||.+.+.+.
T Consensus 152 aSKaal~~~~ 161 (245)
T PRK12367 152 ISKRLIGQLV 161 (245)
T ss_pred HHHHHHHHHH
Confidence 9999986543
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-17 Score=128.63 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=117.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh------hhcCCCceeEEEeecCCchhHHHHHHh----
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL------LDALPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
++++||||+|+||.+++++|+++|. +.|+++.|+++..... ....+..+.++.+|+++.++++..++.
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGA--RHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPAR 78 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhC--CeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4799999999999999999999993 3577778875443221 112234566789999998877666543
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
++.+|+|||+|+..... ...+.++..+++|+.++. .+++++.+.+.+++|++||....-+... ..
T Consensus 79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~ii~~ss~~~~~~~~~----------~~ 147 (180)
T smart00822 79 LGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAW-NLHELTRDLPLDFFVLFSSVAGVLGNPG----------QA 147 (180)
T ss_pred cCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHH-HHHHHhccCCcceEEEEccHHHhcCCCC----------ch
Confidence 46789999999975422 123455678999999996 9999998878889999999655333222 56
Q ss_pred hhHHHHHHHHHHHHHHc---CCceeEeeeee
Q 022280 150 VYGKSKVAAEKFIYEKC---SNFAILRSSII 177 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~---~~~~ilR~~~v 177 (300)
.|+.+|...+.+++... .+.+.+.|+.+
T Consensus 148 ~y~~sk~~~~~~~~~~~~~~~~~~~~~~g~~ 178 (180)
T smart00822 148 NYAAANAFLDALAAHRRARGLPATSINWGAW 178 (180)
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEeeccc
Confidence 89999999999986543 35555665544
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=132.94 Aligned_cols=213 Identities=15% Similarity=0.099 Sum_probs=143.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC------CCceeEEEeecCCchhHHHH----H
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL------PHSFVFFDVDLKSGSGFDAV----A 71 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~----~ 71 (300)
.+|++|||||+..||++++++|++.| .+|++.+|+.+........+ +..+..+.+|+++.++.+++ .
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~G---a~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAG---AKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 89999999977654443321 23567789999988765444 4
Q ss_pred Hh-cCCCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCC
Q 022280 72 LK-FGQPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 72 ~~-~~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
++ ++++|++||+||..... .+++.++..+.+|+.|....+..++.. .+...++++||...+.....
T Consensus 84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~---- 159 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPG---- 159 (270)
T ss_pred HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCC----
Confidence 45 68899999999986532 345567889999999754355444433 35568999998776655322
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
+...|+.+|.+++++.+.++.+ +..+-|+.|..+........... ....+.. ..+.. .....
T Consensus 160 -----~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~-~~~~~~~-~~~~~----~p~gr 228 (270)
T KOG0725|consen 160 -----SGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEM-EEFKEAT-DSKGA----VPLGR 228 (270)
T ss_pred -----CcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchh-hHHhhhh-ccccc----cccCC
Confidence 1268999999999999987654 45566666665541111000000 0111100 00000 12346
Q ss_pred ceeHHHHHHHHHHHHhcc
Q 022280 215 PVYVRDVVKIILALTNRW 232 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~ 232 (300)
+..++|++..+.+++...
T Consensus 229 ~g~~~eva~~~~fla~~~ 246 (270)
T KOG0725|consen 229 VGTPEEVAEAAAFLASDD 246 (270)
T ss_pred ccCHHHHHHhHHhhcCcc
Confidence 788999999999988774
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=131.77 Aligned_cols=161 Identities=11% Similarity=0.098 Sum_probs=114.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++++++||||++.||.+++++|+++| ++|++..|+.+..+.+.+.+ +..+..+.+|++++++++++++ .+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G---~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLG---ATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 89999999876655543322 3456668899999998766554 45
Q ss_pred C-CCCEEEEcccccCcc-c----cccChhhhhhcccccchHHHH----Hhhhhcc-CCeEEEeeccccccCCCCCCCCCC
Q 022280 75 G-QPDVVVNCAALSVPR-V----CENDPDSAMSINVPSSLVNWL----SSFTENK-ENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 75 ~-~~d~vih~a~~~~~~-~----~~~~~~~~~~~nv~~~~~~l~----~~~~~~~-~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
+ ++|++||+||..... . ..+.+...+++|+.+.+ .++ ..+.+.+ .+++|++||...+.
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~m~~~~~~g~Iv~isS~~~~~---------- 149 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLF-TYGQVAAERMRKRNKKGVIVNVISHDDHQ---------- 149 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCceEEEEecCCCCC----------
Confidence 7 899999999853221 1 11233456777887764 443 3343433 46999999965331
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeC
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYG 179 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G 179 (300)
+...|+.+|.+.+.+.+.++. ++..+.|+.+-.
T Consensus 150 ---~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t 189 (227)
T PRK08862 150 ---DLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSA 189 (227)
T ss_pred ---CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcC
Confidence 156799999999999887654 344566665543
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=131.05 Aligned_cols=224 Identities=16% Similarity=0.101 Sum_probs=133.4
Q ss_pred CCCCeEEEEcC--CccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----------C-----CceeEEEeec-
Q 022280 1 MSKKRVLVVGG--TGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----------P-----HSFVFFDVDL- 61 (300)
Q Consensus 1 ~~~~~ilItGa--tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----------~-----~~~~~~~~D~- 61 (300)
|++|++||||| +.+||.++++.|+++| .+|++ .|+.+.++.+.... . .....+.+|+
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~G---a~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 82 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAG---AEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV 82 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCC---CEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence 46899999999 8999999999999999 88888 55544332222111 0 1134577888
Q ss_pred -CCch------------------hHHHHH----HhcCCCCEEEEcccccCc------cccccChhhhhhcccccchHHHH
Q 022280 62 -KSGS------------------GFDAVA----LKFGQPDVVVNCAALSVP------RVCENDPDSAMSINVPSSLVNWL 112 (300)
Q Consensus 62 -~~~~------------------~~~~~~----~~~~~~d~vih~a~~~~~------~~~~~~~~~~~~~nv~~~~~~l~ 112 (300)
++.+ +++.++ +.++++|++|||||.... ..+.+.++..+++|+.+.+ .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~-~l~ 161 (303)
T PLN02730 83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFV-SLL 161 (303)
T ss_pred cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHH-HHH
Confidence 4333 444444 456889999999975321 1234467788999999996 666
Q ss_pred Hhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCCce---eEeeeeeeCCCCC-CCC
Q 022280 113 SSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFA---ILRSSIIYGPQTI-SPV 186 (300)
Q Consensus 113 ~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~---ilR~~~v~G~~~~-~~~ 186 (300)
+++... .-+++|++||.....+.+. ....|+.||.+++.+.+.++.++. -+|...|. |+.. .+.
T Consensus 162 ~~~~p~m~~~G~II~isS~a~~~~~p~---------~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~-PG~v~T~~ 231 (303)
T PLN02730 162 QHFGPIMNPGGASISLTYIASERIIPG---------YGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTIS-AGPLGSRA 231 (303)
T ss_pred HHHHHHHhcCCEEEEEechhhcCCCCC---------CchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEe-eCCccCch
Confidence 555441 1269999999765433221 023799999999999987765432 13443332 2211 111
Q ss_pred CCCc--hHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 187 PKSL--PIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 187 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.... ...... ...... ....+..++|++.++++++...... ..+.++.+.++.
T Consensus 232 ~~~~~~~~~~~~-~~~~~~-------pl~r~~~peevA~~~~fLaS~~a~~--itG~~l~vdGG~ 286 (303)
T PLN02730 232 AKAIGFIDDMIE-YSYANA-------PLQKELTADEVGNAAAFLASPLASA--ITGATIYVDNGL 286 (303)
T ss_pred hhcccccHHHHH-HHHhcC-------CCCCCcCHHHHHHHHHHHhCccccC--ccCCEEEECCCc
Confidence 0000 001111 110110 1234678999999999999753221 112266666553
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=137.41 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=108.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC----------chhhhh---hcCCCceeEEEeecCCchhHH
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP----------LPQLLL---DALPHSFVFFDVDLKSGSGFD 68 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~----------~~~~~~---~~~~~~~~~~~~D~~~~~~~~ 68 (300)
.+|+++||||+++||.+++++|++.| ++|++.+|+.. ....+. ...+..+.++++|++|+++++
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G---~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~ 83 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAG---ATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVR 83 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 46899999999999999999999999 89999998732 222222 222345667899999999876
Q ss_pred HHHH----hcCCCCEEEEcc-cccC-----cc---ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeecccc
Q 022280 69 AVAL----KFGQPDVVVNCA-ALSV-----PR---VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQV 131 (300)
Q Consensus 69 ~~~~----~~~~~d~vih~a-~~~~-----~~---~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~ 131 (300)
.+++ .++++|++|||| |... .. ...+.++..+++|+.+.+ .+.+++. +.+-++||++||...
T Consensus 84 ~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~lp~m~~~~~g~IV~isS~~~ 162 (305)
T PRK08303 84 ALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHL-ITSHFALPLLIRRPGGLVVEITDGTA 162 (305)
T ss_pred HHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHH-HHHHHHHHHhhhCCCcEEEEECCccc
Confidence 6554 457899999999 6421 11 112335567889999886 5544443 334469999998543
Q ss_pred -ccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCC
Q 022280 132 -YEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN 168 (300)
Q Consensus 132 -~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~ 168 (300)
+.... ......|+.||.++..+.+.++.+
T Consensus 163 ~~~~~~--------~~~~~~Y~asKaal~~lt~~La~e 192 (305)
T PRK08303 163 EYNATH--------YRLSVFYDLAKTSVNRLAFSLAHE 192 (305)
T ss_pred cccCcC--------CCCcchhHHHHHHHHHHHHHHHHH
Confidence 22111 012457999999999999877654
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-16 Score=120.77 Aligned_cols=203 Identities=16% Similarity=0.166 Sum_probs=148.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.++.|++||+.-+||+.+++.|...| .+|+++.|.+..+..+-...+..+..+.+|+++-+.+...+.....+|.++
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aG---A~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLV 82 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAG---AQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLV 82 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcC---CEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhh
Confidence 47899999999999999999999999 899999999888888877767777789999999777666666566899999
Q ss_pred EcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccC-CeEEEeeccccccCCCCCCCCCCCCCCCChhH
Q 022280 82 NCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKE-NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYG 152 (300)
Q Consensus 82 h~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~-~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~ 152 (300)
|+||..... .....++..+++|+.+.+ ++.+.. ...++ +.||.+||.+.-.+-.. ++.|.
T Consensus 83 NNAgvA~~~pf~eiT~q~fDr~F~VNvravi-~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~n----------HtvYc 151 (245)
T KOG1207|consen 83 NNAGVATNHPFGEITQQSFDRTFAVNVRAVI-LVAQLVARNLVDRQIKGAIVNVSSQASIRPLDN----------HTVYC 151 (245)
T ss_pred ccchhhhcchHHHHhHHhhcceeeeeeeeee-eHHHHHHHhhhhccCCceEEEecchhcccccCC----------ceEEe
Confidence 999976432 234567888999999986 666653 23343 47999999887655544 78999
Q ss_pred HHHHHHHHHHHHHcC-------CceeEeeeeeeCC---CCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 153 KSKVAAEKFIYEKCS-------NFAILRSSIIYGP---QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 153 ~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.+|.+.+.+.+.++. ++..+.|+.|+-. ..++ .|... -.++. .-+...|..|++++
T Consensus 152 atKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWS-DP~K~-k~mL~------------riPl~rFaEV~eVV 217 (245)
T KOG1207|consen 152 ATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWS-DPDKK-KKMLD------------RIPLKRFAEVDEVV 217 (245)
T ss_pred ecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccC-Cchhc-cchhh------------hCchhhhhHHHHHH
Confidence 999999988776654 3455667766633 2111 11000 00111 11334678899999
Q ss_pred HHHHHHHhcc
Q 022280 223 KIILALTNRW 232 (300)
Q Consensus 223 ~~~~~~~~~~ 232 (300)
.++.+++...
T Consensus 218 nA~lfLLSd~ 227 (245)
T KOG1207|consen 218 NAVLFLLSDN 227 (245)
T ss_pred hhheeeeecC
Confidence 9999999763
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-16 Score=132.90 Aligned_cols=206 Identities=21% Similarity=0.256 Sum_probs=140.1
Q ss_pred cCC--ccchHHHHHhhhhccCCCceeeecCCCCCc----hhhhhhcCCCceeEEEeecCCchhHHHHHH----hc-CCCC
Q 022280 10 GGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTPL----PQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KF-GQPD 78 (300)
Q Consensus 10 Gat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~-~~~d 78 (300)
|++ +.||++++++|+++| ++|++++|+.+. ...+.++.+.. .+++|++++++++.+++ .+ +++|
T Consensus 1 g~~~s~GiG~aia~~l~~~G---a~V~~~~~~~~~~~~~~~~l~~~~~~~--~~~~D~~~~~~v~~~~~~~~~~~~g~iD 75 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEG---ANVILTDRNEEKLADALEELAKEYGAE--VIQCDLSDEESVEALFDEAVERFGGRID 75 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTT---EEEEEEESSHHHHHHHHHHHHHHTTSE--EEESCTTSHHHHHHHHHHHHHHHCSSES
T ss_pred CCCCCCChHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHHHHHHcCCc--eEeecCcchHHHHHHHHHHHhhcCCCeE
Confidence 666 999999999999999 999999999765 34445554544 58999999998766654 47 8999
Q ss_pred EEEEcccccCc----cc----cccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 79 VVVNCAALSVP----RV----CENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 79 ~vih~a~~~~~----~~----~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
++||+++.... .. +.+.++..+++|+.+.+ .+++.+.+ ..-+++|++||.....+.+. .
T Consensus 76 ~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gsii~iss~~~~~~~~~----------~ 144 (241)
T PF13561_consen 76 ILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPF-LLAQAALPLMKKGGSIINISSIAAQRPMPG----------Y 144 (241)
T ss_dssp EEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHEEEEEEEEEGGGTSBSTT----------T
T ss_pred EEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCcccccchhhcccCcc----------c
Confidence 99999997654 11 22345678899999986 77666644 12258999999876555433 5
Q ss_pred ChhHHHHHHHHHHHHHHcCCc--------eeEeeeeeeCCCCCCCCCCCc--hHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 149 NVYGKSKVAAEKFIYEKCSNF--------AILRSSIIYGPQTISPVPKSL--PIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~--------~ilR~~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
..|+.+|.+++.+.+.++.++ ..+.||.+..+.. ..+ ...+... ... ..+...+..+
T Consensus 145 ~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~-----~~~~~~~~~~~~-~~~-------~~pl~r~~~~ 211 (241)
T PF13561_consen 145 SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMT-----ERIPGNEEFLEE-LKK-------RIPLGRLGTP 211 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHH-----HHHHTHHHHHHH-HHH-------HSTTSSHBEH
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccch-----hccccccchhhh-hhh-------hhccCCCcCH
Confidence 589999999999998776543 3344444432210 000 0011111 100 1234567899
Q ss_pred HHHHHHHHHHHhcc--ccccccccceeeecCC
Q 022280 219 RDVVKIILALTNRW--LSEDKQMQLLLNVGGP 248 (300)
Q Consensus 219 ~D~a~~~~~~~~~~--~~~~~~~~~i~ni~~~ 248 (300)
+|+|.++.+|+... ...|+ ++.+.+|
T Consensus 212 ~evA~~v~fL~s~~a~~itG~----~i~vDGG 239 (241)
T PF13561_consen 212 EEVANAVLFLASDAASYITGQ----VIPVDGG 239 (241)
T ss_dssp HHHHHHHHHHHSGGGTTGTSE----EEEESTT
T ss_pred HHHHHHHHHHhCccccCccCC----eEEECCC
Confidence 99999999999864 23333 7888776
|
... |
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=120.76 Aligned_cols=218 Identities=17% Similarity=0.208 Sum_probs=144.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh---hhcC-CCceeEEEeecCCchhHHHHH----Hh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL---LDAL-PHSFVFFDVDLKSGSGFDAVA----LK 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~---~~~~-~~~~~~~~~D~~~~~~~~~~~----~~ 73 (300)
++|++++|||.|+||..+.++|+++| ..+.+...+.+.++.. .... ...+.|+++|+++..++++.+ ..
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kg---ik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~ 80 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKG---IKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT 80 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcC---chheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHH
Confidence 58999999999999999999999999 7888888876655433 2222 346778999999988766555 45
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchH---HHHHhhhhcc---CCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLV---NWLSSFTENK---ENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~---~l~~~~~~~~---~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++.+|++||.||+.. +.+++.++.+|+.|.+. ..+..+.+.+ .+-+|.+||.....|.+-
T Consensus 81 fg~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~---------- 146 (261)
T KOG4169|consen 81 FGTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPV---------- 146 (261)
T ss_pred hCceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCcccc----------
Confidence 789999999999875 34789999999887642 3556665532 247999999665544432
Q ss_pred CChhHHHHHHHHHHHHHHcCCcee----EeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC-----cccCceeH
Q 022280 148 VNVYGKSKVAAEKFIYEKCSNFAI----LRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD-----ECRCPVYV 218 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~~~~i----lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~v 218 (300)
...|++||+..--+-|+++...-. +|+-. ..|+-. -..++...-.++..+..... ....--..
T Consensus 147 ~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~a-vCPG~t-------~t~l~~~~~~~~~~~e~~~~~~~~l~~~~~q~~ 218 (261)
T KOG4169|consen 147 FPVYAASKAGVVGFTRSLADLAYYQRSGVRFNA-VCPGFT-------RTDLAENIDASGGYLEYSDSIKEALERAPKQSP 218 (261)
T ss_pred chhhhhcccceeeeehhhhhhhhHhhcCEEEEE-ECCCcc-------hHHHHHHHHhcCCcccccHHHHHHHHHcccCCH
Confidence 568999999988877776553211 22211 233311 11223322222222221110 01123468
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+++..++.++|.+. +|. +|-+.++.
T Consensus 219 ~~~a~~~v~aiE~~~-NGa----iw~v~~g~ 244 (261)
T KOG4169|consen 219 ACCAINIVNAIEYPK-NGA----IWKVDSGS 244 (261)
T ss_pred HHHHHHHHHHHhhcc-CCc----EEEEecCc
Confidence 899999999999943 333 88887765
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=118.97 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=116.7
Q ss_pred CCeEEEEcC-CccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh-----cCC
Q 022280 3 KKRVLVVGG-TGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK-----FGQ 76 (300)
Q Consensus 3 ~~~ilItGa-tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-----~~~ 76 (300)
.++|||||+ .|+||.+|++++.++| |.|+++.|+.++...+..+. ++...+.|+++++.+..+... .|+
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G---~~V~AtaR~~e~M~~L~~~~--gl~~~kLDV~~~~~V~~v~~evr~~~~Gk 81 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNG---YLVYATARRLEPMAQLAIQF--GLKPYKLDVSKPEEVVTVSGEVRANPDGK 81 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCC---eEEEEEccccchHhhHHHhh--CCeeEEeccCChHHHHHHHHHHhhCCCCc
Confidence 478999987 5999999999999999 99999999988888776543 456689999999987665543 467
Q ss_pred CCEEEEcccccCcccc----ccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRVC----ENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
.|+++|+||..=.... .+.-+..+++|+.|.+ ++.++..+ ...+.||+++|..+|-+-+- .+
T Consensus 82 ld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~i-rM~~a~~h~likaKGtIVnvgSl~~~vpfpf----------~~ 150 (289)
T KOG1209|consen 82 LDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHI-RMCRALSHFLIKAKGTIVNVGSLAGVVPFPF----------GS 150 (289)
T ss_pred eEEEEcCCCCCcccccccCCHHHHHhhhccceeeee-hHHHHHHHHHHHccceEEEecceeEEeccch----------hh
Confidence 9999999997532111 1223567899999996 77776654 22348999999998877543 56
Q ss_pred hhHHHHHHHHHHHHHHcCC
Q 022280 150 VYGKSKVAAEKFIYEKCSN 168 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~~ 168 (300)
.|.+||++..++.+.+..+
T Consensus 151 iYsAsKAAihay~~tLrlE 169 (289)
T KOG1209|consen 151 IYSASKAAIHAYARTLRLE 169 (289)
T ss_pred hhhHHHHHHHHhhhhcEEe
Confidence 8999999999988877653
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=118.30 Aligned_cols=163 Identities=14% Similarity=0.190 Sum_probs=119.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHH----HHHhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDA----VALKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~----~~~~~~~~ 77 (300)
.+.+||||||+.+||.+|++++.+.| -+|++.+|+...+.+.....+. +....+|+.|.++.++ +.+.++..
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elg---N~VIi~gR~e~~L~e~~~~~p~-~~t~v~Dv~d~~~~~~lvewLkk~~P~l 79 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELG---NTVIICGRNEERLAEAKAENPE-IHTEVCDVADRDSRRELVEWLKKEYPNL 79 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhC---CEEEEecCcHHHHHHHHhcCcc-hheeeecccchhhHHHHHHHHHhhCCch
Confidence 46789999999999999999999999 8999999998877776666544 4448899999986544 44566789
Q ss_pred CEEEEcccccCccc------cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV------CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 78 d~vih~a~~~~~~~------~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+++|||||+..... ..+..+..+.+|+.+++ .+..+ ..++.-.-+|.+||.-.+-+...
T Consensus 80 NvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API-~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~---------- 148 (245)
T COG3967 80 NVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPI-RLTALLLPHLLRQPEATIINVSSGLAFVPMAS---------- 148 (245)
T ss_pred heeeecccccchhhccCCcchhhHHHHHHHHhhhhHH-HHHHHHHHHHHhCCCceEEEeccccccCcccc----------
Confidence 99999999875321 11223456789999996 55444 33444458999999888777554
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeC
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYG 179 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G 179 (300)
...|-.+|++...+..++.. ++.=+-|+.|--
T Consensus 149 ~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t 187 (245)
T COG3967 149 TPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDT 187 (245)
T ss_pred cccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceec
Confidence 55799999999876655432 333355666654
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=132.66 Aligned_cols=212 Identities=15% Similarity=0.108 Sum_probs=132.6
Q ss_pred EEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHh----cCCCCE
Q 022280 7 LVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALK----FGQPDV 79 (300)
Q Consensus 7 lItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~----~~~~d~ 79 (300)
+||||+++||.+++++|+++|. ++|++..|+.+........+ +..+.++.+|++|.++++++++. ++++|+
T Consensus 1 lITGas~GIG~aia~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~ 78 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGK--WHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDV 78 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCE
Confidence 6999999999999999999994 57888888866555444433 23566789999999987776654 367999
Q ss_pred EEEcccccCcc-----ccccChhhhhhcccccchHHHH----Hhhhhcc--CCeEEEeeccccccCC-----CC------
Q 022280 80 VVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWL----SSFTENK--ENLLIHLSTDQVYEGV-----KS------ 137 (300)
Q Consensus 80 vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~----~~~~~~~--~~~~v~~SS~~~~~~~-----~~------ 137 (300)
+|||||+.... .+.+.++..+++|+.|++ .+. ..+.+.+ .++||++||...+-.. ..
T Consensus 79 lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~ 157 (308)
T PLN00015 79 LVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHF-LLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 157 (308)
T ss_pred EEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhh
Confidence 99999975321 123345688999999985 554 4444444 4699999997654210 00
Q ss_pred ---------------CCCCCCCCCCCChhHHHHHHHHHHHHHHc--------CCceeEeeeeeeCCCCCCCCCCCchHHH
Q 022280 138 ---------------FYKEEDEIAPVNVYGKSKVAAEKFIYEKC--------SNFAILRSSIIYGPQTISPVPKSLPIQW 194 (300)
Q Consensus 138 ---------------~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~--------~~~~ilR~~~v~G~~~~~~~~~~~~~~~ 194 (300)
++++ ....+...|+.||.+.+.+.+.+. ..+..+.||.|......... .. ....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~-~~-~~~~ 234 (308)
T PLN00015 158 LRGLAGGLNGLNSSAMIDG-GEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREH-IP-LFRL 234 (308)
T ss_pred hhhhhcccCCccchhhccc-cCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccc-cH-HHHH
Confidence 0001 112345689999999666554332 23566888887532211100 00 0000
Q ss_pred HHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 195 IDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
....+. .. ....+..+++.|+.+++++...
T Consensus 235 ~~~~~~---~~-----~~~~~~~pe~~a~~~~~l~~~~ 264 (308)
T PLN00015 235 LFPPFQ---KY-----ITKGYVSEEEAGKRLAQVVSDP 264 (308)
T ss_pred HHHHHH---HH-----HhcccccHHHhhhhhhhhcccc
Confidence 000000 00 0112567999999999988763
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-15 Score=116.37 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=110.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeee-cCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHhc--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA-THHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALKF-- 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~-~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~-- 74 (300)
|..+.++||||+.+||..|+++|++.-. .++++ +.|+++.+....+. .+.+++.++.|+++.+++....++.
T Consensus 1 Mspksv~ItGaNRGIGlgLVk~llk~~~--i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~ 78 (249)
T KOG1611|consen 1 MSPKSVFITGANRGIGLGLVKELLKDKG--IEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEK 78 (249)
T ss_pred CCCccEEEeccCcchhHHHHHHHhcCCC--cEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHh
Confidence 6788999999999999999999997543 55554 45546653322222 2678999999999988877766543
Q ss_pred ----CCCCEEEEcccccCccccc-----cChhhhhhcccccchH---HHHHhhhhccCC-----------eEEEeecccc
Q 022280 75 ----GQPDVVVNCAALSVPRVCE-----NDPDSAMSINVPSSLV---NWLSSFTENKEN-----------LLIHLSTDQV 131 (300)
Q Consensus 75 ----~~~d~vih~a~~~~~~~~~-----~~~~~~~~~nv~~~~~---~l~~~~~~~~~~-----------~~v~~SS~~~ 131 (300)
.+.|.+++|||+...-... ..+.+.+++|+.|++. .++...++...+ .||++||.+.
T Consensus 79 iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~ 158 (249)
T KOG1611|consen 79 IVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAG 158 (249)
T ss_pred hcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeecccc
Confidence 4789999999987542211 1245678999999852 222222222222 7999998664
Q ss_pred ccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCC
Q 022280 132 YEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN 168 (300)
Q Consensus 132 ~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~ 168 (300)
-.. ...+.+...|..||.++..+.++...+
T Consensus 159 s~~-------~~~~~~~~AYrmSKaAlN~f~ksls~d 188 (249)
T KOG1611|consen 159 SIG-------GFRPGGLSAYRMSKAALNMFAKSLSVD 188 (249)
T ss_pred ccC-------CCCCcchhhhHhhHHHHHHHHHHhhhh
Confidence 311 122345789999999999999988753
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=125.82 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=125.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHHh---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVALK--- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~--- 73 (300)
.+++++|||||++||.+++++|+.+| .+|+.+.|+.++.....+++ ...+.++++|+++.+++....+.
T Consensus 34 ~~~~~vVTGansGIG~eta~~La~~G---a~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 34 SGKVALVTGATSGIGFETARELALRG---AHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred CCcEEEEECCCCchHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999999999 89999999975544443332 35677799999999987766654
Q ss_pred -cCCCCEEEEcccccCccc--cccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCC--CC-CCCCCCC
Q 022280 74 -FGQPDVVVNCAALSVPRV--CENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGV--KS-FYKEEDE 144 (300)
Q Consensus 74 -~~~~d~vih~a~~~~~~~--~~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~--~~-~~~E~~~ 144 (300)
+.+.|++||+||++.... ..+..+..+.+|..|... .+++.++.....|||++||... +.. -. .-.|...
T Consensus 111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~~~~ 189 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGEKAK 189 (314)
T ss_pred cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccchhcc
Confidence 357999999999986543 334578889999999841 3445555554469999999765 111 11 1122221
Q ss_pred -CCCCChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCC
Q 022280 145 -IAPVNVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQT 182 (300)
Q Consensus 145 -~~p~~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~ 182 (300)
......|+.||.+...+..++.+ ....+.||.+...+-
T Consensus 190 ~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l 234 (314)
T KOG1208|consen 190 LYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGL 234 (314)
T ss_pred CccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccce
Confidence 22233699999999877766654 345577887776543
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-14 Score=109.33 Aligned_cols=198 Identities=11% Similarity=0.105 Sum_probs=140.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|.|+||||-+|++++++++++| ++|++..|++.+...+ +.+...+.|+.|++++.+.+. +.|+||..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivRn~~K~~~~-----~~~~i~q~Difd~~~~a~~l~---g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVRNASKLAAR-----QGVTILQKDIFDLTSLASDLA---GHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEeChHhcccc-----ccceeecccccChhhhHhhhc---CCceEEEe
Confidence 689999999999999999999999 8999999997766533 345568999999988766666 89999997
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHH--HH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAE--KF 161 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e--~~ 161 (300)
-+...++ .++... .. ...+++..+.++++|++.++.+...-..++..-.+.|..|...|..++...| +.
T Consensus 70 ~~~~~~~-----~~~~~~---k~-~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~~A~~~ae~L~~ 140 (211)
T COG2910 70 FGAGASD-----NDELHS---KS-IEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKPEALAQAEFLDS 140 (211)
T ss_pred ccCCCCC-----hhHHHH---HH-HHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHHHHHHHHHHHHHH
Confidence 6644221 111111 11 1367777777899999999876554333333334566677778888888888 34
Q ss_pred HHHH-cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccc
Q 022280 162 IYEK-CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 162 ~~~~-~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 233 (300)
++.. +..|+.+-|+..|-|+......+ -++.....+...-++|..+|.|-+++--++++.
T Consensus 141 Lr~~~~l~WTfvSPaa~f~PGerTg~yr------------lggD~ll~n~~G~SrIS~aDYAiA~lDe~E~~~ 201 (211)
T COG2910 141 LRAEKSLDWTFVSPAAFFEPGERTGNYR------------LGGDQLLVNAKGESRISYADYAIAVLDELEKPQ 201 (211)
T ss_pred HhhccCcceEEeCcHHhcCCccccCceE------------eccceEEEcCCCceeeeHHHHHHHHHHHHhccc
Confidence 4443 34899999999998876432211 122222233445689999999999999999864
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=122.61 Aligned_cols=161 Identities=19% Similarity=0.236 Sum_probs=113.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc--hhhhhhcCC----CceeEEEeecCC-chhHHHHHH-
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQLLLDALP----HSFVFFDVDLKS-GSGFDAVAL- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~--~~~~~~~~~----~~~~~~~~D~~~-~~~~~~~~~- 72 (300)
|++|+||||||++.||.++++.|+++| +.|++..++.+. ......... ..+.+...|+++ .++++.+++
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~ 79 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREG---ARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAA 79 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHH
Confidence 457899999999999999999999999 888888877553 233333223 356667899998 776555443
Q ss_pred ---hcCCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhhhc-cCCeEEEeeccccccCCCCCCCCCC
Q 022280 73 ---KFGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 ---~~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
.++++|++||+||.... ....+.++..+.+|+.+.+ .+.+.+... ..++||++||.... .....
T Consensus 80 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~-~~~~~~~~~~~~~~Iv~isS~~~~-~~~~~----- 152 (251)
T COG1028 80 AEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAF-LLTRAALPLMKKQRIVNISSVAGL-GGPPG----- 152 (251)
T ss_pred HHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHH-HHHHHHHHhhhhCeEEEECCchhc-CCCCC-----
Confidence 46779999999998642 1223456788999999885 555533221 11199999998876 43320
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeee
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSS 175 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~ 175 (300)
...|+.||.+.+.+.+.+.. ++..+-|+
T Consensus 153 ----~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG 187 (251)
T COG1028 153 ----QAAYAASKAALIGLTKALALELAPRGIRVNAVAPG 187 (251)
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEec
Confidence 37899999999998876653 34455566
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-14 Score=121.46 Aligned_cols=220 Identities=15% Similarity=0.060 Sum_probs=126.9
Q ss_pred CCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCC---------Cchh--hhhh-cCCC-----ceeEEEeecC
Q 022280 2 SKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHST---------PLPQ--LLLD-ALPH-----SFVFFDVDLK 62 (300)
Q Consensus 2 ~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~---------~~~~--~~~~-~~~~-----~~~~~~~D~~ 62 (300)
.+|+++||||+ .+||+++++.|+++| ++|++.++.+ +... .... ..+. .+..+..|+.
T Consensus 7 ~gk~alITGa~~~~GIG~a~A~~la~~G---a~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~ 83 (299)
T PRK06300 7 TGKIAFIAGIGDDQGYGWGIAKALAEAG---ATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFD 83 (299)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCC---CEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcC
Confidence 47899999995 999999999999999 8898865431 0000 0000 0000 0001223443
Q ss_pred Cch------------------h----HHHHHHhcCCCCEEEEcccccC--c----cccccChhhhhhcccccchHHHHHh
Q 022280 63 SGS------------------G----FDAVALKFGQPDVVVNCAALSV--P----RVCENDPDSAMSINVPSSLVNWLSS 114 (300)
Q Consensus 63 ~~~------------------~----~~~~~~~~~~~d~vih~a~~~~--~----~~~~~~~~~~~~~nv~~~~~~l~~~ 114 (300)
+++ + ++.+.++++++|++|||||... . ..+.+.++..+++|+.|.+ .+.++
T Consensus 84 ~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~-~l~~a 162 (299)
T PRK06300 84 TPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFV-SLLSH 162 (299)
T ss_pred CCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHH-HHHHH
Confidence 332 2 3445556789999999998642 1 1233456788999999996 77666
Q ss_pred hhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCCC-hhHHHHHHHHHHHHHHcCCc--------eeEeeeeeeCCCCC
Q 022280 115 FTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPVN-VYGKSKVAAEKFIYEKCSNF--------AILRSSIIYGPQTI 183 (300)
Q Consensus 115 ~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~-~Y~~sK~~~e~~~~~~~~~~--------~ilR~~~v~G~~~~ 183 (300)
+... ..+++|++||.....+.+. .. .|+.||.+++.+.+.++.++ ..+.|+.+--+...
T Consensus 163 ~~p~m~~~G~ii~iss~~~~~~~p~----------~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~ 232 (299)
T PRK06300 163 FGPIMNPGGSTISLTYLASMRAVPG----------YGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGK 232 (299)
T ss_pred HHHHhhcCCeEEEEeehhhcCcCCC----------ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhh
Confidence 5541 2358999998665433221 22 79999999999888765433 33444444322100
Q ss_pred CCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
. . ......... ..... ....+..++|++.++.+++...... ..+.++.+.++
T Consensus 233 ~-~--~~~~~~~~~-~~~~~-------p~~r~~~peevA~~v~~L~s~~~~~--itG~~i~vdGG 284 (299)
T PRK06300 233 A-I--GFIERMVDY-YQDWA-------PLPEPMEAEQVGAAAAFLVSPLASA--ITGETLYVDHG 284 (299)
T ss_pred c-c--cccHHHHHH-HHhcC-------CCCCCcCHHHHHHHHHHHhCccccC--CCCCEEEECCC
Confidence 0 0 000111111 10111 1234678999999999998753211 11236777665
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=118.91 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=122.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-CCceeEEEeecCCchhHHHHHHhc------
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKF------ 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~------ 74 (300)
..+-|||||+-.+.|..|+++|.++| +.|.+..-.++....+.... .++...++.|++++++++++.+..
T Consensus 28 ~~k~VlITGCDSGfG~~LA~~L~~~G---f~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~ 104 (322)
T KOG1610|consen 28 SDKAVLITGCDSGFGRLLAKKLDKKG---FRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGE 104 (322)
T ss_pred CCcEEEEecCCcHHHHHHHHHHHhcC---CEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccc
Confidence 35679999999999999999999999 99999997777777777666 677888999999999987766532
Q ss_pred CCCCEEEEcccccCccc-----cccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV-----CENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
.+.=.||||||+..... ..+++...+++|+.|++. .++...+++. +|+|++||+..--+.+.
T Consensus 105 ~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar-GRvVnvsS~~GR~~~p~--------- 174 (322)
T KOG1610|consen 105 DGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR-GRVVNVSSVLGRVALPA--------- 174 (322)
T ss_pred ccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-CeEEEecccccCccCcc---------
Confidence 35789999999764321 233567889999999972 3344444433 49999999775333322
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeC
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYG 179 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G 179 (300)
..+|..||.++|.+..... ..+.++-|| +|-
T Consensus 175 -~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~ 212 (322)
T KOG1610|consen 175 -LGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFK 212 (322)
T ss_pred -cccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-ccc
Confidence 5689999999999876544 456778887 443
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=119.34 Aligned_cols=205 Identities=12% Similarity=0.070 Sum_probs=133.4
Q ss_pred HHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEEEEcccccCccccccChh
Q 022280 19 LLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVVVNCAALSVPRVCENDPD 97 (300)
Q Consensus 19 l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~vih~a~~~~~~~~~~~~~ 97 (300)
++++|+++| ++|++.+|+.+... ...++++|++|.+++.++++.. +++|+||||||.... ..++
T Consensus 1 ~a~~l~~~G---~~Vv~~~r~~~~~~--------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~~----~~~~ 65 (241)
T PRK12428 1 TARLLRFLG---ARVIGVDRREPGMT--------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPGT----APVE 65 (241)
T ss_pred ChHHHHhCC---CEEEEEeCCcchhh--------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCCC----CCHH
Confidence 478899999 89999999865432 1235789999999988888764 479999999997532 3578
Q ss_pred hhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCC-CCCCC----------------CCCCCCChhHHHHHHH
Q 022280 98 SAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKS-FYKEE----------------DEIAPVNVYGKSKVAA 158 (300)
Q Consensus 98 ~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~-~~~E~----------------~~~~p~~~Y~~sK~~~ 158 (300)
..+++|+.+++ .+++.+... ..++||++||...|+.... +..|. .+..+...|+.||.++
T Consensus 66 ~~~~vN~~~~~-~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~ 144 (241)
T PRK12428 66 LVARVNFLGLR-HLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEAL 144 (241)
T ss_pred HhhhhchHHHH-HHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHH
Confidence 89999999996 777777652 2369999999988863221 11111 2333467899999999
Q ss_pred HHHHHHHc-C-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHh
Q 022280 159 EKFIYEKC-S-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 159 e~~~~~~~-~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 230 (300)
+.+.+.++ . ++..++||.+.++-.....+ ..-...... . ......+..++|+|+++++++.
T Consensus 145 ~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~-----~~~~~~~~~-~-----~~~~~~~~~pe~va~~~~~l~s 213 (241)
T PRK12428 145 ILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRS-----MLGQERVDS-D-----AKRMGRPATADEQAAVLVFLCS 213 (241)
T ss_pred HHHHHHHHHHhhhccCeEEEEeecCCccCcccccchh-----hhhhHhhhh-c-----ccccCCCCCHHHHHHHHHHHcC
Confidence 98887655 2 45678888887663211000 000000100 0 0123346789999999999886
Q ss_pred ccccccccccceeeecCCCccC
Q 022280 231 RWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~~~~s 252 (300)
.... ...+..+.+.+|....
T Consensus 214 ~~~~--~~~G~~i~vdgg~~~~ 233 (241)
T PRK12428 214 DAAR--WINGVNLPVDGGLAAT 233 (241)
T ss_pred hhhc--CccCcEEEecCchHHH
Confidence 4321 1112356666654333
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.2e-14 Score=115.75 Aligned_cols=207 Identities=18% Similarity=0.218 Sum_probs=142.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC-----CceeEEEeecCCchhHHHHHHhc----
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP-----HSFVFFDVDLKSGSGFDAVALKF---- 74 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~---- 74 (300)
.+|+||||+..||..++.++..+| .+|.++.|+.++..++...+. ..+.+.-+|+.|.++++.+++..
T Consensus 34 ~hi~itggS~glgl~la~e~~~~g---a~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~ 110 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREG---ADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLE 110 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHcc---CceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhcc
Confidence 489999999999999999999999 789999999877766655442 22557789999999988888776
Q ss_pred CCCCEEEEcccccCcccccc----ChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRVCEN----DPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~----~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+.+|.+|||||...+...++ .....+++|..|++ +.+.++.. .. .++|+.+||...--+-.+
T Consensus 111 ~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~-~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~G-------- 181 (331)
T KOG1210|consen 111 GPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTV-NVAKAAARAMKKREHLGRIILVSSQLAMLGIYG-------- 181 (331)
T ss_pred CCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhH-HHHHHHHHHhhccccCcEEEEehhhhhhcCccc--------
Confidence 68999999999876543333 23567899999997 76665443 22 348999988665333333
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCce--eEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCSNFA--ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~~~~--ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 223 (300)
.+.|+.+|.+...+.....+|.. -++.+..|-+.-..++ +-.+-. ........-++..+.+..+++|.
T Consensus 182 --ysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpG-------fE~En~-tkP~~t~ii~g~ss~~~~e~~a~ 251 (331)
T KOG1210|consen 182 --YSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPG-------FERENK-TKPEETKIIEGGSSVIKCEEMAK 251 (331)
T ss_pred --ccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCc-------cccccc-cCchheeeecCCCCCcCHHHHHH
Confidence 57899999999888877766543 3444444433222211 111100 11112222345556788999999
Q ss_pred HHHHHHhcc
Q 022280 224 IILALTNRW 232 (300)
Q Consensus 224 ~~~~~~~~~ 232 (300)
+++.=+.+.
T Consensus 252 ~~~~~~~rg 260 (331)
T KOG1210|consen 252 AIVKGMKRG 260 (331)
T ss_pred HHHhHHhhc
Confidence 998887773
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-14 Score=113.91 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=109.5
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC--C-chhhhh---hcCCCceeEEEeecCCchhHHHHHHhc----
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST--P-LPQLLL---DALPHSFVFFDVDLKSGSGFDAVALKF---- 74 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~--~-~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~---- 74 (300)
++|||||+|.||..+++.|+++|. .+++++.|++ . ...... +..+..+.++.+|++|++++.++++..
T Consensus 2 tylitGG~gglg~~la~~La~~~~--~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGA--RRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCC--CEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhcc
Confidence 589999999999999999999985 6899999982 1 222222 223567888999999999998888764
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
++++.|||+|+..... .+.+..+..+...+.|.. ++.+.+.....+.+|.+||+...-...+ ...
T Consensus 80 ~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~-~L~~~~~~~~l~~~i~~SSis~~~G~~g----------q~~ 148 (181)
T PF08659_consen 80 GPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLW-NLHEALENRPLDFFILFSSISSLLGGPG----------QSA 148 (181)
T ss_dssp S-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHH-HHHHHHTTTTTSEEEEEEEHHHHTT-TT----------BHH
T ss_pred CCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHH-HHHHHhhcCCCCeEEEECChhHhccCcc----------hHh
Confidence 5789999999986432 122334567788888885 9999888888899999999775444434 678
Q ss_pred hHHHHHHHHHHHHHHc---CCceeEeee
Q 022280 151 YGKSKVAAEKFIYEKC---SNFAILRSS 175 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~---~~~~ilR~~ 175 (300)
|+.+-..++.+.+... .++..+..+
T Consensus 149 YaaAN~~lda~a~~~~~~g~~~~sI~wg 176 (181)
T PF08659_consen 149 YAAANAFLDALARQRRSRGLPAVSINWG 176 (181)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 9999999999886543 355555543
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-14 Score=108.71 Aligned_cols=158 Identities=20% Similarity=0.175 Sum_probs=115.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|.+|..+|.||||..|+.+++.+++.+.= .+|++..|+.....+. ...+.-.+.|... +++..+.+-++|+.
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~F-SKV~~i~RR~~~d~at----~k~v~q~~vDf~K---l~~~a~~~qg~dV~ 87 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQF-SKVYAILRRELPDPAT----DKVVAQVEVDFSK---LSQLATNEQGPDVL 87 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccc-eeEEEEEeccCCCccc----cceeeeEEechHH---HHHHHhhhcCCceE
Confidence 56889999999999999999999999864 5788888884322211 1233335666665 44444444599999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
|+|-|.+..... .+..+.++-+-.+ .+++++++.||++|+.+||...-..+ ...|...|...|+
T Consensus 88 FcaLgTTRgkaG---adgfykvDhDyvl-~~A~~AKe~Gck~fvLvSS~GAd~sS------------rFlY~k~KGEvE~ 151 (238)
T KOG4039|consen 88 FCALGTTRGKAG---ADGFYKVDHDYVL-QLAQAAKEKGCKTFVLVSSAGADPSS------------RFLYMKMKGEVER 151 (238)
T ss_pred EEeecccccccc---cCceEeechHHHH-HHHHHHHhCCCeEEEEEeccCCCccc------------ceeeeeccchhhh
Confidence 999987764322 2333333333334 88899999999999999998764333 4579999999999
Q ss_pred HHHHHcC-CceeEeeeeeeCCCC
Q 022280 161 FIYEKCS-NFAILRSSIIYGPQT 182 (300)
Q Consensus 161 ~~~~~~~-~~~ilR~~~v~G~~~ 182 (300)
-+.++.. ++.|+|||.+.|...
T Consensus 152 ~v~eL~F~~~~i~RPG~ll~~R~ 174 (238)
T KOG4039|consen 152 DVIELDFKHIIILRPGPLLGERT 174 (238)
T ss_pred hhhhccccEEEEecCcceecccc
Confidence 8888764 799999999999764
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-14 Score=106.54 Aligned_cols=219 Identities=21% Similarity=0.256 Sum_probs=148.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~d 78 (300)
+-..|||||.+.+|.+.++.|.++| ..|++++-+.++-....+++++++.|...|++..++++..+. ++++.|
T Consensus 9 glvalvtggasglg~ataerlakqg---asv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld 85 (260)
T KOG1199|consen 9 GLVALVTGGASGLGKATAERLAKQG---ASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLD 85 (260)
T ss_pred CeeEEeecCcccccHHHHHHHHhcC---ceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhcccee
Confidence 3468999999999999999999999 889999988777777778888999999999999887766554 578999
Q ss_pred EEEEcccccCc----------cccccChhhhhhcccccchHHHHHhhh----h----c-cC-CeEEEeeccccccCCCCC
Q 022280 79 VVVNCAALSVP----------RVCENDPDSAMSINVPSSLVNWLSSFT----E----N-KE-NLLIHLSTDQVYEGVKSF 138 (300)
Q Consensus 79 ~vih~a~~~~~----------~~~~~~~~~~~~~nv~~~~~~l~~~~~----~----~-~~-~~~v~~SS~~~~~~~~~~ 138 (300)
..+||||+... ....++++..+++|+.|++ |++.... + + |. +-+|...|.+.|...-+
T Consensus 86 ~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtf-nvirl~aglmg~nepdq~gqrgviintasvaafdgq~g- 163 (260)
T KOG1199|consen 86 ALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTF-NVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTG- 163 (260)
T ss_pred eeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeee-eeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCccc-
Confidence 99999997532 1234566788999999996 7655432 1 1 22 24677778777777655
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHcCCc--eeEeeeeeeCCCCC-CCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 139 YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF--AILRSSIIYGPQTI-SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 139 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~--~ilR~~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|++||.+.--+..-.+..+ .-+|+..| .|+.. .+.-.++|. -+...+.+.-+++ ...
T Consensus 164 ---------qaaysaskgaivgmtlpiardla~~gir~~ti-apglf~tpllsslpe-kv~~fla~~ipfp------srl 226 (260)
T KOG1199|consen 164 ---------QAAYSASKGAIVGMTLPIARDLAGDGIRFNTI-APGLFDTPLLSSLPE-KVKSFLAQLIPFP------SRL 226 (260)
T ss_pred ---------hhhhhcccCceEeeechhhhhcccCceEEEee-cccccCChhhhhhhH-HHHHHHHHhCCCc------hhc
Confidence 7899999987654433222221 11343333 23321 111222222 2333332222221 145
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGG 247 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~ 247 (300)
-|+.+.+..+...++++.-+|+ ++-+.+
T Consensus 227 g~p~eyahlvqaiienp~lnge----vir~dg 254 (260)
T KOG1199|consen 227 GHPHEYAHLVQAIIENPYLNGE----VIRFDG 254 (260)
T ss_pred CChHHHHHHHHHHHhCcccCCe----EEEecc
Confidence 6899999999999999877776 666654
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-13 Score=115.52 Aligned_cols=212 Identities=16% Similarity=0.110 Sum_probs=135.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh-cC-CCceeEEEeecCCch-hHHHHHHhcC-CC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD-AL-PHSFVFFDVDLKSGS-GFDAVALKFG-QP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~-~~-~~~~~~~~~D~~~~~-~~~~~~~~~~-~~ 77 (300)
+.+.|||+||||.+|+.+++.|+++| +.|.++.|+.++...+.. .. .....-+..|...+. .+..+.+... ..
T Consensus 78 ~~~~VlVvGatG~vG~~iv~~llkrg---f~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~ 154 (411)
T KOG1203|consen 78 KPTTVLVVGATGKVGRRIVKILLKRG---FSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGV 154 (411)
T ss_pred CCCeEEEecCCCchhHHHHHHHHHCC---CeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccccc
Confidence 45789999999999999999999999 999999999776665544 11 122333555554433 3444444331 23
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHH
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~ 156 (300)
.+++-|++-... +++-..-+.+...|+. |++++|+.+|++|++++||+..--.... ++... ...+-.+|.
T Consensus 155 ~~v~~~~ggrp~---~ed~~~p~~VD~~g~k-nlvdA~~~aGvk~~vlv~si~~~~~~~~~~~~~~-----~~~~~~~k~ 225 (411)
T KOG1203|consen 155 VIVIKGAGGRPE---EEDIVTPEKVDYEGTK-NLVDACKKAGVKRVVLVGSIGGTKFNQPPNILLL-----NGLVLKAKL 225 (411)
T ss_pred eeEEecccCCCC---cccCCCcceecHHHHH-HHHHHHHHhCCceEEEEEeecCcccCCCchhhhh-----hhhhhHHHH
Confidence 455555553221 1112233567778885 9999999999999999998776444322 00000 123448999
Q ss_pred HHHHHHHHHcCCceeEeeeeeeCCCCC-CCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccc
Q 022280 157 AAEKFIYEKCSNFAILRSSIIYGPQTI-SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235 (300)
Q Consensus 157 ~~e~~~~~~~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~ 235 (300)
.+|+++.+.+.+++|+|++...-.... ...+ . .+.+....++..--.+.-.|+|+.++.++.++...
T Consensus 226 ~~e~~~~~Sgl~ytiIR~g~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~i~r~~vael~~~all~~~~~ 293 (411)
T KOG1203|consen 226 KAEKFLQDSGLPYTIIRPGGLEQDTGGQREVV-------V-----DDEKELLTVDGGAYSISRLDVAELVAKALLNEAAT 293 (411)
T ss_pred hHHHHHHhcCCCcEEEeccccccCCCCcceec-------c-----cCccccccccccceeeehhhHHHHHHHHHhhhhhc
Confidence 999999999999999999987643221 1100 0 11111111111123578899999999999887766
Q ss_pred cc
Q 022280 236 DK 237 (300)
Q Consensus 236 ~~ 237 (300)
..
T Consensus 294 ~~ 295 (411)
T KOG1203|consen 294 FK 295 (411)
T ss_pred cc
Confidence 53
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-13 Score=107.64 Aligned_cols=204 Identities=16% Similarity=0.106 Sum_probs=144.9
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEcc
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCA 84 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a 84 (300)
+.++.|+.||.|+++++...+.+ ..|-.+.|+.. .++.+..+..+.++++|....+-+..... ++..++-++
T Consensus 54 ~tlvlggnpfsgs~vlk~A~~vv---~svgilsen~~--k~~l~sw~~~vswh~gnsfssn~~k~~l~---g~t~v~e~~ 125 (283)
T KOG4288|consen 54 WTLVLGGNPFSGSEVLKNATNVV---HSVGILSENEN--KQTLSSWPTYVSWHRGNSFSSNPNKLKLS---GPTFVYEMM 125 (283)
T ss_pred HHhhhcCCCcchHHHHHHHHhhc---eeeeEeecccC--cchhhCCCcccchhhccccccCcchhhhc---CCcccHHHh
Confidence 57899999999999999999999 78988888854 45566667788888888765443444443 888888888
Q ss_pred cccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 022280 85 ALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYE 164 (300)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~ 164 (300)
+.+. +...+..+|-+..+ +.++++.++|+++|+|+|-... |..+ .-...|-.+|..+|..+..
T Consensus 126 ggfg------n~~~m~~ing~ani-~a~kaa~~~gv~~fvyISa~d~-~~~~---------~i~rGY~~gKR~AE~Ell~ 188 (283)
T KOG4288|consen 126 GGFG------NIILMDRINGTANI-NAVKAAAKAGVPRFVYISAHDF-GLPP---------LIPRGYIEGKREAEAELLK 188 (283)
T ss_pred cCcc------chHHHHHhccHhhH-HHHHHHHHcCCceEEEEEhhhc-CCCC---------ccchhhhccchHHHHHHHH
Confidence 7543 33445567776665 8899999999999999996442 2211 1134799999999986654
Q ss_pred -HcCCceeEeeeeeeCCCCCCCC--CCCchHHHHH---HHH-hcCCceeeccCcccCceeHHHHHHHHHHHHhccc
Q 022280 165 -KCSNFAILRSSIIYGPQTISPV--PKSLPIQWID---SVL-SKGEKVEFFHDECRCPVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 165 -~~~~~~ilR~~~v~G~~~~~~~--~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 233 (300)
+..+-.++|||.+||....... |-.+...-+. +.+ +.-.++++.|.-.+.++.++++|.+.+.+++.+.
T Consensus 189 ~~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~ 264 (283)
T KOG4288|consen 189 KFRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPD 264 (283)
T ss_pred hcCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCC
Confidence 4557899999999998532211 1111111111 111 2234566667778889999999999999998853
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-13 Score=106.28 Aligned_cols=260 Identities=13% Similarity=0.094 Sum_probs=159.2
Q ss_pred CeEEEEcCCccchHHHHHhhh-----hcc--CCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLS-----EIE--GKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~-----~~g--~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
.+.++-+++|+|+..|..... +.+ ++ ++|.++.|++.+. ++.+.+.|..--- ..
T Consensus 13 r~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~-h~vtv~sR~pg~~---------ritw~el~~~Gip---------~s 73 (315)
T KOG3019|consen 13 RDAVSNWSNGIIRENLGSETSCCHDTNVHSADN-HAVTVLSRSPGKA---------RITWPELDFPGIP---------IS 73 (315)
T ss_pred ccCCCCccccchhccccCcccccccCCCCcccc-cceEEEecCCCCc---------ccccchhcCCCCc---------ee
Confidence 356778899999988876432 111 11 7888888886543 2333333322100 02
Q ss_pred CCEEEEccccc----CccccccChhhhhhcccccchHHHHHhhhhcc--CCeEEEeeccccccCCCC-CCCCCCCCCCCC
Q 022280 77 PDVVVNCAALS----VPRVCENDPDSAMSINVPSSLVNWLSSFTENK--ENLLIHLSTDQVYEGVKS-FYKEEDEIAPVN 149 (300)
Q Consensus 77 ~d~vih~a~~~----~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~ 149 (300)
++++++.++.. ...++++-.++.+-..+..+- .++++...+. .+.+|.+|..++|-++.. .++|+++-...+
T Consensus 74 c~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~-~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~~~qgfd 152 (315)
T KOG3019|consen 74 CVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTS-KLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKIVHQGFD 152 (315)
T ss_pred hHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHH-HHHHHHhcCCCCCCCeEEEEeeEEeccccccccccccccCChH
Confidence 34444444432 223333333344444444442 6677766543 468999999999999876 788888876666
Q ss_pred hhHHHHHHHHHHHHHHcC--CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS--NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILA 227 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~--~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 227 (300)
....--..-|...+..+. +.+++|.+.|.|.+........++.++- -+.+ .-.|.|.+.|||++|++..+..
T Consensus 153 ~~srL~l~WE~aA~~~~~~~r~~~iR~GvVlG~gGGa~~~M~lpF~~g-----~GGP-lGsG~Q~fpWIHv~DL~~li~~ 226 (315)
T KOG3019|consen 153 ILSRLCLEWEGAALKANKDVRVALIRIGVVLGKGGGALAMMILPFQMG-----AGGP-LGSGQQWFPWIHVDDLVNLIYE 226 (315)
T ss_pred HHHHHHHHHHHHhhccCcceeEEEEEEeEEEecCCcchhhhhhhhhhc-----cCCc-CCCCCeeeeeeehHHHHHHHHH
Confidence 555444444554444443 6799999999998764322111111110 1222 2234578899999999999999
Q ss_pred HHhccccccccccceeeecCCCccCHHHHHH-----hhccC------------CCC-------CccccChHHHHHhcCCC
Q 022280 228 LTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRGV------------QSP-------ADISMDITKLVQTLNID 283 (300)
Q Consensus 228 ~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~~------------~~~-------~~~~~~~~k~~~~lg~~ 283 (300)
+++++...| ++|-..++..+..|+++ +.+.. ..+ ....+-.+|+ ..+||+
T Consensus 227 ale~~~v~G-----ViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA~~vLeGqKV~Pqra-l~~Gf~ 300 (315)
T KOG3019|consen 227 ALENPSVKG-----VINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERATVVLEGQKVLPQRA-LELGFE 300 (315)
T ss_pred HHhcCCCCc-----eecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccceeEEeeCCcccchhH-hhcCce
Confidence 999966555 89999999999999998 11111 111 1223456677 558999
Q ss_pred c--CCHHHHHHHHH
Q 022280 284 P--VTYKDGVKLTL 295 (300)
Q Consensus 284 p--~~~~~~l~~~~ 295 (300)
+ ..+.+++++.+
T Consensus 301 f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 301 FKYPYVKDALRAIM 314 (315)
T ss_pred eechHHHHHHHHHh
Confidence 8 47899988765
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=142.84 Aligned_cols=163 Identities=13% Similarity=0.051 Sum_probs=120.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc----------------------------------------
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL---------------------------------------- 42 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~---------------------------------------- 42 (300)
++++|||||+++||..++++|+++|. .+|++++|++..
T Consensus 1997 g~vvLVTGGarGIG~aiA~~LA~~~g--a~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~ 2074 (2582)
T TIGR02813 1997 DDVFLVTGGAKGVTFECALELAKQCQ--AHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVR 2074 (2582)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhcC--CEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhccc
Confidence 57899999999999999999999832 789999988210
Q ss_pred -------hhhh---hhcCCCceeEEEeecCCchhHHHHHHhc---CCCCEEEEcccccCcc----ccccChhhhhhcccc
Q 022280 43 -------PQLL---LDALPHSFVFFDVDLKSGSGFDAVALKF---GQPDVVVNCAALSVPR----VCENDPDSAMSINVP 105 (300)
Q Consensus 43 -------~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~ 105 (300)
.... ....+..+.++.+|++|.+++..+++.. +++|.|||+||..... .+.+.++..+++|+.
T Consensus 2075 ~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~ 2154 (2582)
T TIGR02813 2075 PVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVD 2154 (2582)
T ss_pred ccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHH
Confidence 0000 1122456778999999999877766543 4799999999975432 234467788999999
Q ss_pred cchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCC-----ceeEeeeeee
Q 022280 106 SSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN-----FAILRSSIIY 178 (300)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~-----~~ilR~~~v~ 178 (300)
|.. ++++++.....++||++||...+.+..+ ...|+.+|..++.+.+.+..+ +..+.+|.+-
T Consensus 2155 G~~-~Ll~al~~~~~~~IV~~SSvag~~G~~g----------qs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wd 2221 (2582)
T TIGR02813 2155 GLL-SLLAALNAENIKLLALFSSAAGFYGNTG----------QSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWD 2221 (2582)
T ss_pred HHH-HHHHHHHHhCCCeEEEEechhhcCCCCC----------cHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeec
Confidence 996 9999988777779999999876544434 678999999999888766543 3445555443
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-13 Score=112.93 Aligned_cols=164 Identities=13% Similarity=0.221 Sum_probs=119.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecCCchh-HHHHHHhcC--C
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLKSGSG-FDAVALKFG--Q 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~-~~~~~~~~~--~ 76 (300)
.-+.|||||.+||++.+++|+++| ++|++..|++++++...+++ +-.+.++..|+++++. ++.+.+.+. .
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG---~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~ 126 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRG---FNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLD 126 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCc
Confidence 458999999999999999999999 99999999998887766554 4457788999998775 455544443 5
Q ss_pred CCEEEEcccccCc--ccccc----ChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVP--RVCEN----DPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 77 ~d~vih~a~~~~~--~~~~~----~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+-++|||+|+... ....+ ..+..+.+|+.++.. -++..+.+.+-+-+|++||.+..-+.+.
T Consensus 127 VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~---------- 196 (312)
T KOG1014|consen 127 VGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPL---------- 196 (312)
T ss_pred eEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccChh----------
Confidence 7799999998752 11111 224567888888631 3455555666678999999877665544
Q ss_pred CChhHHHHHHHHHHHHHHcCCc-------eeEeeeeeeCC
Q 022280 148 VNVYGKSKVAAEKFIYEKCSNF-------AILRSSIIYGP 180 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~~~-------~ilR~~~v~G~ 180 (300)
.+.|+.||...+.+...+..|+ ..+-|..|-.+
T Consensus 197 ~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTk 236 (312)
T KOG1014|consen 197 LSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATK 236 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecc
Confidence 7899999999998887665532 34555555554
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-12 Score=102.76 Aligned_cols=208 Identities=13% Similarity=0.085 Sum_probs=131.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~~ 77 (300)
+++.||+||++..||..++..+.+++.+ ..+++..|...+...+.-..++...+..+|++....+.+.. .+.++-
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e-~~r~g~~r~~a~~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~gkr 83 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDE-ALRYGVARLLAELEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKGGKR 83 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchH-HHHHhhhcccccccceEEEecCCcceechHHHHHHHHHHHHhhhhhcCCce
Confidence 3578999999999999999999999865 44555555544444443333434444566776655433333 334679
Q ss_pred CEEEEcccccCc-------cccccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVP-------RVCENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 78 d~vih~a~~~~~-------~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
|.||||||...+ ..+.+.+..+|+.|+.+.+ .+...+.. .. .+-+|++||.+...+-.+
T Consensus 84 ~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~V-sL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~~-------- 154 (253)
T KOG1204|consen 84 DIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMV-SLVQWALPKLKKSPVNGNVVNVSSLAAVRPFSS-------- 154 (253)
T ss_pred eEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHH-hhHHHHHHHhcCCCccCeEEEecchhhhccccH--------
Confidence 999999997543 1233457889999999886 55544443 32 268999999887666555
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-C-----ceeEeeeeeeCCCC--CCCCCCCchH--HHHHHHHhcCCceeeccCcccCc
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-N-----FAILRSSIIYGPQT--ISPVPKSLPI--QWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-~-----~~ilR~~~v~G~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
+..|..+|++.+.+++.++. + ...++||.+=-+-. .....+..+. .++.+.. +..+.
T Consensus 155 --wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~-----------~~~~l 221 (253)
T KOG1204|consen 155 --WAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELK-----------ESGQL 221 (253)
T ss_pred --HHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHH-----------hcCCc
Confidence 78999999999999987765 2 23344443321100 0000001111 1111111 22357
Q ss_pred eeHHHHHHHHHHHHhcc
Q 022280 216 VYVRDVVKIILALTNRW 232 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~ 232 (300)
+++.+.++.+..++++.
T Consensus 222 l~~~~~a~~l~~L~e~~ 238 (253)
T KOG1204|consen 222 LDPQVTAKVLAKLLEKG 238 (253)
T ss_pred CChhhHHHHHHHHHHhc
Confidence 88999999999999984
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.5e-12 Score=98.19 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHH----Hhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVA----LKF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~----~~~ 74 (300)
.+++++||||+|+||.++++.|+++| ++|++.+|+.+........ .+....++.+|+++.+++.+++ +.+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G---~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQG---AKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999 8999999886544333222 2344566899999988766644 456
Q ss_pred CCCCEEEEcccccCccccc-c-ChhhhhhcccccchH---HHHHhhhh-------ccCCeEEEeecccc
Q 022280 75 GQPDVVVNCAALSVPRVCE-N-DPDSAMSINVPSSLV---NWLSSFTE-------NKENLLIHLSTDQV 131 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~-~-~~~~~~~~nv~~~~~---~l~~~~~~-------~~~~~~v~~SS~~~ 131 (300)
+++|++|||||........ . ..+..-..|+.++.. .+...+.+ ++.+||..+||.+.
T Consensus 92 G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 92 SRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred CCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 7999999999976532211 1 111223555555431 22222222 23457777777553
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=93.80 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=113.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCC--CceeeecCCCCCchhhhhhcC----C---CceeEEEeecCCchhHHHH-
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGK--PYDVAATHHSTPLPQLLLDAL----P---HSFVFFDVDLKSGSGFDAV- 70 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~--~~~v~~~~r~~~~~~~~~~~~----~---~~~~~~~~D~~~~~~~~~~- 70 (300)
|+.|.+||||+++.||.+||.+|++..++ +.++++++|+.+++++...++ + -.+.++..|++|..++..+
T Consensus 1 ~~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~ 80 (341)
T KOG1478|consen 1 MMRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRAS 80 (341)
T ss_pred CCceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHH
Confidence 67789999999999999999999998764 277899999977766544332 3 2466789999998875443
Q ss_pred ---HHhcCCCCEEEEcccccCccc-------------------------------cccChhhhhhcccccchHHHHHhh-
Q 022280 71 ---ALKFGQPDVVVNCAALSVPRV-------------------------------CENDPDSAMSINVPSSLVNWLSSF- 115 (300)
Q Consensus 71 ---~~~~~~~d~vih~a~~~~~~~-------------------------------~~~~~~~~~~~nv~~~~~~l~~~~- 115 (300)
.+++.+.|+|+-+||+...+. +.+.-.+.++.||.|.. -++...
T Consensus 81 ~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhf-yli~~l~ 159 (341)
T KOG1478|consen 81 KDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHF-YLIRELE 159 (341)
T ss_pred HHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchh-hhHhhhh
Confidence 345678999999999876421 11233467899999985 443333
Q ss_pred ---hhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC
Q 022280 116 ---TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS 167 (300)
Q Consensus 116 ---~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~ 167 (300)
....-.++|.+||...-...-+ .+.-.......+|..||.+.+-+-.....
T Consensus 160 pll~~~~~~~lvwtSS~~a~kk~ls-leD~q~~kg~~pY~sSKrl~DlLh~A~~~ 213 (341)
T KOG1478|consen 160 PLLCHSDNPQLVWTSSRMARKKNLS-LEDFQHSKGKEPYSSSKRLTDLLHVALNR 213 (341)
T ss_pred hHhhcCCCCeEEEEeecccccccCC-HHHHhhhcCCCCcchhHHHHHHHHHHHhc
Confidence 3333448999999664322111 11111223456899999999987765543
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.4e-11 Score=93.11 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=76.9
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHHh----cCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALK----FGQP 77 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~----~~~~ 77 (300)
|+++|||||||+|. +++.|+++| ++|++..|+++....+...+ ...+.++.+|++|++++..+++. ++++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G---~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~i 76 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKG---FHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPF 76 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCc---CEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 58999999998875 999999999 89999998866554444322 24566788999999987766653 4678
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC----eEEEee
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN----LLIHLS 127 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~----~~v~~S 127 (300)
|.+|+.+ ++.++ .++..+|++.+++ +++|+=
T Consensus 77 d~lv~~v------------------h~~~~-~~~~~~~~~~gv~~~~~~~~h~~ 111 (177)
T PRK08309 77 DLAVAWI------------------HSSAK-DALSVVCRELDGSSETYRLFHVL 111 (177)
T ss_pred eEEEEec------------------cccch-hhHHHHHHHHccCCCCceEEEEe
Confidence 8888753 23344 3899999999988 899984
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=86.16 Aligned_cols=227 Identities=19% Similarity=0.178 Sum_probs=132.1
Q ss_pred CCCCeEEEEcC--CccchHHHHHhhhhccCCCceeeecCCCCC---chhhhhhcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGG--TGYLGQHLLQGLSEIEGKPYDVAATHHSTP---LPQLLLDALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGa--tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|.+|++||+|- ..-|+..+++.|.++| .++..+...+. +..++.+.++... .+++|+++.+++.++++
T Consensus 4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~G---AeL~fTy~~e~l~krv~~la~~~~s~~-v~~cDV~~d~~i~~~f~~i~ 79 (259)
T COG0623 4 LEGKRILIMGVANNRSIAWGIAKALAEQG---AELAFTYQGERLEKRVEELAEELGSDL-VLPCDVTNDESIDALFATIK 79 (259)
T ss_pred cCCceEEEEEecccccHHHHHHHHHHHcC---CEEEEEeccHHHHHHHHHHHhhccCCe-EEecCCCCHHHHHHHHHHHH
Confidence 57899999997 4789999999999999 88888887742 2334444443322 48999999998776665
Q ss_pred -hcCCCCEEEEcccccCcc--------ccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVPR--------VCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~~--------~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
+++++|.++|+.++..-. .+.+.+...+++..-+.. .++++++. .+-+.+|.++=.. ...-
T Consensus 80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~-~lak~a~~lM~~ggSiltLtYlg---s~r~---- 151 (259)
T COG0623 80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFT-ALAKAARPLMNNGGSILTLTYLG---SERV---- 151 (259)
T ss_pred HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHH-HHHHHHHHhcCCCCcEEEEEecc---ceee----
Confidence 467899999999976522 122233334444444433 55666554 2233555554221 1110
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcCCc--eeEeeeee-eCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCSNF--AILRSSII-YGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~~--~ilR~~~v-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
.| ..+.-+.+|+..|.-+|.++.+. --+|.-.| -||-.. .-..-+.. +..+++.... ..+.+.-+..
T Consensus 152 --vP-nYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrT--LAasgI~~-f~~~l~~~e~----~aPl~r~vt~ 221 (259)
T COG0623 152 --VP-NYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRT--LAASGIGD-FRKMLKENEA----NAPLRRNVTI 221 (259)
T ss_pred --cC-CCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHH--HHhhcccc-HHHHHHHHHh----hCCccCCCCH
Confidence 01 14567899999999888765431 12343332 233110 00000001 1222211110 1245667789
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
+||....++++.....+-. +.+.++.+|-.+
T Consensus 222 eeVG~tA~fLlSdLssgiT--Gei~yVD~G~~i 252 (259)
T COG0623 222 EEVGNTAAFLLSDLSSGIT--GEIIYVDSGYHI 252 (259)
T ss_pred HHhhhhHHHHhcchhcccc--cceEEEcCCcee
Confidence 9999999999877544322 337777776543
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=95.68 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=81.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
||+|||.|+ |+||+.++..|+++|. .+|++++|+.++..++......+++..+.|+.|.+++.++++ +.|+|||
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d--~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~---~~d~VIn 74 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD--GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK---DFDLVIN 74 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh---cCCEEEE
Confidence 689999997 9999999999999997 799999999888888877666688899999999998888888 6699999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEee
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLS 127 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~S 127 (300)
++.++.. .+++++|.+.|+ +++-+|
T Consensus 75 ~~p~~~~-------------------~~i~ka~i~~gv-~yvDts 99 (389)
T COG1748 75 AAPPFVD-------------------LTILKACIKTGV-DYVDTS 99 (389)
T ss_pred eCCchhh-------------------HHHHHHHHHhCC-CEEEcc
Confidence 9875421 266777777776 555444
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=91.99 Aligned_cols=171 Identities=14% Similarity=0.112 Sum_probs=109.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh--hhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ--LLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
+|+||.|+|++|.||+.++..|+.++.- .++++.++...... .+.+... .....+.+|+.++.+.++ +.|+
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~-~elvL~Di~~~~g~a~Dl~~~~~---~~~v~~~td~~~~~~~l~---gaDv 79 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHV-SELSLYDIVGAPGVAADLSHIDT---PAKVTGYADGELWEKALR---GADL 79 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCC-CEEEEEecCCCcccccchhhcCc---CceEEEecCCCchHHHhC---CCCE
Confidence 5789999999999999999999966643 68888888321111 1111111 223456667555344445 9999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC---CCCCCCCCCCCChhHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS---FYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~---~~~E~~~~~p~~~Y~~sK~ 156 (300)
||++||..... .......+..|+.... ++++++++++++++|+++|--+.....- .+.+....+|...||.+-+
T Consensus 80 VVitaG~~~~~--~~tR~dll~~N~~i~~-~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~L 156 (321)
T PTZ00325 80 VLICAGVPRKP--GMTRDDLFNTNAPIVR-DLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTL 156 (321)
T ss_pred EEECCCCCCCC--CCCHHHHHHHHHHHHH-HHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhH
Confidence 99999975432 1245678899999985 9999999999999999998654332211 1223444455667777632
Q ss_pred HHHHHH----HHHcCCceeEeeeeeeCCCCC
Q 022280 157 AAEKFI----YEKCSNFAILRSSIIYGPQTI 183 (300)
Q Consensus 157 ~~e~~~----~~~~~~~~ilR~~~v~G~~~~ 183 (300)
..-++- +.++.....++ +.|+|.+..
T Consensus 157 Ds~R~r~~la~~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 157 DVVRARKFVAEALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred HHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence 222222 23333434455 777887654
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-08 Score=86.64 Aligned_cols=81 Identities=22% Similarity=0.159 Sum_probs=60.3
Q ss_pred CCeEEEEcCCccchHH--HHHhhhhccCCCceeeecCCCCCc---------------hhhhhhcCCCceeEEEeecCCch
Q 022280 3 KKRVLVVGGTGYLGQH--LLQGLSEIEGKPYDVAATHHSTPL---------------PQLLLDALPHSFVFFDVDLKSGS 65 (300)
Q Consensus 3 ~~~ilItGatG~iG~~--l~~~L~~~g~~~~~v~~~~r~~~~---------------~~~~~~~~~~~~~~~~~D~~~~~ 65 (300)
+|++|||||++.||.+ +++.| +.| .+|+++.+..++ .....+..+..+..+.+|+++++
T Consensus 41 gK~aLVTGaSsGIGlA~~IA~al-~~G---A~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E 116 (398)
T PRK13656 41 PKKVLVIGASSGYGLASRIAAAF-GAG---ADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE 116 (398)
T ss_pred CCEEEEECCCchHhHHHHHHHHH-HcC---CeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 5899999999999999 89999 999 777777743211 12222333344556899999998
Q ss_pred hHHHHH----HhcCCCCEEEEccccc
Q 022280 66 GFDAVA----LKFGQPDVVVNCAALS 87 (300)
Q Consensus 66 ~~~~~~----~~~~~~d~vih~a~~~ 87 (300)
++.+++ +.++++|+|||++|..
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccC
Confidence 765555 4568899999999976
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.4e-09 Score=85.64 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCCCeEEEEcCC----------------ccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCc
Q 022280 1 MSKKRVLVVGGT----------------GYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64 (300)
Q Consensus 1 ~~~~~ilItGat----------------G~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (300)
|.+|+||||+|. ||+|++|+++|+++| ++|+++.+........... ......++.|....
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~G---a~V~li~g~~~~~~~~~~~-~~~~~~V~s~~d~~ 76 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKG---AHVIYLHGYFAEKPNDINN-QLELHPFEGIIDLQ 76 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCC---CeEEEEeCCCcCCCcccCC-ceeEEEEecHHHHH
Confidence 578999999885 999999999999999 8888776532211100000 11122344422222
Q ss_pred hhHHHHHHhcCCCCEEEEcccccCcc
Q 022280 65 SGFDAVALKFGQPDVVVNCAALSVPR 90 (300)
Q Consensus 65 ~~~~~~~~~~~~~d~vih~a~~~~~~ 90 (300)
+.+.++++.. ++|+|||+|+..++.
T Consensus 77 ~~l~~~~~~~-~~D~VIH~AAvsD~~ 101 (229)
T PRK09620 77 DKMKSIITHE-KVDAVIMAAAGSDWV 101 (229)
T ss_pred HHHHHHhccc-CCCEEEECcccccee
Confidence 3455555433 799999999997654
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.8e-08 Score=88.21 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=60.8
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhc-CCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDA-LPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|.|| |++|+.+++.|++++. . +|++.+|+.++...+.+. ...++..++.|+.|.+++.++++ +.|+||||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~--~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~---~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGP--FEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR---GCDVVINC 74 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTC--E-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT---TSSEEEE-
T ss_pred CEEEcC-cHHHHHHHHHHhcCCC--CCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh---cCCEEEEC
Confidence 799999 9999999999999975 4 899999998887777665 46788899999999998888877 88999999
Q ss_pred cccc
Q 022280 84 AALS 87 (300)
Q Consensus 84 a~~~ 87 (300)
++.+
T Consensus 75 ~gp~ 78 (386)
T PF03435_consen 75 AGPF 78 (386)
T ss_dssp SSGG
T ss_pred Cccc
Confidence 9865
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=82.29 Aligned_cols=170 Identities=14% Similarity=0.088 Sum_probs=107.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
..||.|+|++|.||+.++..|+.++.- .++++.+.++ ......+..+........++++.+++.+.++ +.|+|||
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~-~el~L~Di~~-~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~---~aDiVVi 92 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLV-SELHLYDIAN-TPGVAADVSHINTPAQVRGFLGDDQLGDALK---GADLVII 92 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC-CEEEEEecCC-CCeeEchhhhCCcCceEEEEeCCCCHHHHcC---CCCEEEE
Confidence 368999999999999999999977742 4788888765 1111111101111113335544444555555 9999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccC---CCCCCCCCCCCCCCChhHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEG---VKSFYKEEDEIAPVNVYGKSKVAAE 159 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~---~~~~~~E~~~~~p~~~Y~~sK~~~e 159 (300)
+||....+ ....++.+..|+.... ++++.+.+.++..+|+++|-=+-+. -...+.......|...||.++...+
T Consensus 93 tAG~~~~~--g~~R~dll~~N~~i~~-~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~ 169 (323)
T PLN00106 93 PAGVPRKP--GMTRDDLFNINAGIVK-TLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVV 169 (323)
T ss_pred eCCCCCCC--CCCHHHHHHHHHHHHH-HHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHH
Confidence 99976432 2356778899999885 9999999999988888887332110 0001223344556778888887777
Q ss_pred HHHHHHc----CCceeEeeeeeeCCC
Q 022280 160 KFIYEKC----SNFAILRSSIIYGPQ 181 (300)
Q Consensus 160 ~~~~~~~----~~~~ilR~~~v~G~~ 181 (300)
++-..++ .+..-++ +.|+|.+
T Consensus 170 Rl~~~lA~~lgv~~~~V~-~~ViGeH 194 (323)
T PLN00106 170 RANTFVAEKKGLDPADVD-VPVVGGH 194 (323)
T ss_pred HHHHHHHHHhCCChhheE-EEEEEeC
Confidence 6554443 3333343 4455654
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-07 Score=80.62 Aligned_cols=170 Identities=13% Similarity=0.087 Sum_probs=91.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCC----CceeeecCCCCCc--hhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGK----PYDVAATHHSTPL--PQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~----~~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
.+|+||||+|++|++++..|+..+.- .+++++.++++.. .......+.+.......|+....++.+.++ ++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~---~a 79 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK---DV 79 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC---CC
Confidence 57999999999999999999985520 0489999886432 111000000000011223333334444444 99
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CC-eEEEeeccc-cccCCCCCCCCCCCCCC-C----C
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-EN-LLIHLSTDQ-VYEGVKSFYKEEDEIAP-V----N 149 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~-~~v~~SS~~-~~~~~~~~~~E~~~~~p-~----~ 149 (300)
|+|||+||..... .....+.++.|+.-. ..+.+.+.+.. .. .+|.+|... +.. ....|..+..| . .
T Consensus 80 DiVI~tAG~~~~~--~~~R~~l~~~N~~i~-~~i~~~i~~~~~~~~iiivvsNPvD~~t---~~~~k~~~~~~~~~ig~g 153 (325)
T cd01336 80 DVAILVGAMPRKE--GMERKDLLKANVKIF-KEQGEALDKYAKKNVKVLVVGNPANTNA---LILLKYAPSIPKENFTAL 153 (325)
T ss_pred CEEEEeCCcCCCC--CCCHHHHHHHHHHHH-HHHHHHHHHhCCCCeEEEEecCcHHHHH---HHHHHHcCCCCHHHEEee
Confidence 9999999976432 224567788898765 37777777763 33 455555311 000 00111111011 1 1
Q ss_pred hhHHHHHHHHHHHHHHcCCceeEeeeeeeCCCC
Q 022280 150 VYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQT 182 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~~~~ilR~~~v~G~~~ 182 (300)
.+-.+..+-..+.+.++.+...++-..|+|.+.
T Consensus 154 t~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG 186 (325)
T cd01336 154 TRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHS 186 (325)
T ss_pred ehHHHHHHHHHHHHHhCcChhhceEeEEEEcCC
Confidence 233444444555556665555555556677653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-07 Score=79.57 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=65.1
Q ss_pred eEEEEcCCccchHHHHHhhhh----ccCCCceeeecCCCCCchhhhhhcC--------CCceeEEEeecCCchhHHHHHH
Q 022280 5 RVLVVGGTGYLGQHLLQGLSE----IEGKPYDVAATHHSTPLPQLLLDAL--------PHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~----~g~~~~~v~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
-++|.|||||-|..++++++. .| ...-+.+|++.++.+.++.. +..+ ++.+|.+|++++.++.+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~---~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~emak 82 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEG---LSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMAK 82 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccC---ceEEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHHh
Confidence 378999999999999999999 66 78888999988776655433 2234 68999999999999988
Q ss_pred hcCCCCEEEEcccccCc
Q 022280 73 KFGQPDVVVNCAALSVP 89 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~ 89 (300)
++.+|+||+|++..
T Consensus 83 ---~~~vivN~vGPyR~ 96 (423)
T KOG2733|consen 83 ---QARVIVNCVGPYRF 96 (423)
T ss_pred ---hhEEEEecccccee
Confidence 88999999998764
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-07 Score=76.39 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=58.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|||+||||. |+.|++.|.++| ++|++..++......+... ....+..+..|.+++.+.++.. ++|+||+.
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s~~t~~~~~~~~~~---g~~~v~~g~l~~~~l~~~l~~~-~i~~VIDA 72 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVTVTTSEGKHLYPIH---QALTVHTGALDPQELREFLKRH-SIDILVDA 72 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEEEccCCcccccccc---CCceEEECCCCHHHHHHHHHhc-CCCEEEEc
Confidence 68999999999 999999999999 8999999886544333221 1222566777878887777765 89999998
Q ss_pred cccc
Q 022280 84 AALS 87 (300)
Q Consensus 84 a~~~ 87 (300)
+.++
T Consensus 73 tHPf 76 (256)
T TIGR00715 73 THPF 76 (256)
T ss_pred CCHH
Confidence 7644
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.9e-07 Score=80.56 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=60.9
Q ss_pred CCCCeEEEEcC----------------CccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCc
Q 022280 1 MSKKRVLVVGG----------------TGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64 (300)
Q Consensus 1 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (300)
|.+++|||||| +|.+|.+++++|..+| ++|++..++.+ .. .+.. ....|+++.
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~G---a~V~~v~~~~~-~~-----~~~~--~~~~dv~~~ 254 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRG---ADVTLVSGPVN-LP-----TPAG--VKRIDVESA 254 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCC---CEEEEeCCCcc-cc-----CCCC--cEEEccCCH
Confidence 46789999999 8999999999999999 89998887642 11 1122 246789988
Q ss_pred hhHHHHHH-hcCCCCEEEEcccccCcc
Q 022280 65 SGFDAVAL-KFGQPDVVVNCAALSVPR 90 (300)
Q Consensus 65 ~~~~~~~~-~~~~~d~vih~a~~~~~~ 90 (300)
+++.+.+. .++++|++||+||+.+..
T Consensus 255 ~~~~~~v~~~~~~~DilI~~Aav~d~~ 281 (399)
T PRK05579 255 QEMLDAVLAALPQADIFIMAAAVADYR 281 (399)
T ss_pred HHHHHHHHHhcCCCCEEEEcccccccc
Confidence 87666554 467899999999987654
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.5e-07 Score=74.47 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=45.3
Q ss_pred CCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchh-HHHHHHhcCCCCEEEEcccccCc
Q 022280 11 GTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSG-FDAVALKFGQPDVVVNCAALSVP 89 (300)
Q Consensus 11 atG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~~d~vih~a~~~~~ 89 (300)
+|||+|++|+++|+++| ++|+++.|+..... . .+..+.++..+ ..++ .+.+.+.++++|+|||+||..+.
T Consensus 24 SSG~iG~aLA~~L~~~G---~~V~li~r~~~~~~-~---~~~~v~~i~v~--s~~~m~~~l~~~~~~~DivIh~AAvsd~ 94 (229)
T PRK06732 24 STGQLGKIIAETFLAAG---HEVTLVTTKTAVKP-E---PHPNLSIIEIE--NVDDLLETLEPLVKDHDVLIHSMAVSDY 94 (229)
T ss_pred cchHHHHHHHHHHHhCC---CEEEEEECcccccC-C---CCCCeEEEEEe--cHHHHHHHHHHHhcCCCEEEeCCccCCc
Confidence 47999999999999999 89998877532111 0 12344544433 2222 22333444589999999998753
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.2e-07 Score=71.47 Aligned_cols=78 Identities=24% Similarity=0.176 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCC--ceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH--SFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
.+++++|+||+|.+|+.+++.|++.| .+|++..|+.++...+.+.+.. .......|..+.+++.+.+. +.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~di 100 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREG---ARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK---GADV 100 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh---cCCE
Confidence 46899999999999999999999999 8899999987666555443321 23344567777666666665 8999
Q ss_pred EEEccc
Q 022280 80 VVNCAA 85 (300)
Q Consensus 80 vih~a~ 85 (300)
||++..
T Consensus 101 Vi~at~ 106 (194)
T cd01078 101 VFAAGA 106 (194)
T ss_pred EEECCC
Confidence 999754
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.6e-07 Score=74.76 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=64.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
..++|.|||||.|.-++++|+.+| .+-.+..|+..++..+...++.....+ ++-+++.++++.+ +.++|+||
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g---~~~aLAgRs~~kl~~l~~~LG~~~~~~--p~~~p~~~~~~~~---~~~VVlnc 78 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREG---LTAALAGRSSAKLDALRASLGPEAAVF--PLGVPAALEAMAS---RTQVVLNC 78 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcC---CchhhccCCHHHHHHHHHhcCcccccc--CCCCHHHHHHHHh---cceEEEec
Confidence 358999999999999999999999 677889999988888888877665533 3445777888877 89999999
Q ss_pred ccccCc
Q 022280 84 AALSVP 89 (300)
Q Consensus 84 a~~~~~ 89 (300)
+|++..
T Consensus 79 vGPyt~ 84 (382)
T COG3268 79 VGPYTR 84 (382)
T ss_pred cccccc
Confidence 998753
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.2e-06 Score=75.16 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=73.3
Q ss_pred CCCCeEEEEcC----------------CccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCc
Q 022280 1 MSKKRVLVVGG----------------TGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64 (300)
Q Consensus 1 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (300)
|.+++|||||| ||.+|.+++++|..+| ++|++..++.... .+..+ ...|+++.
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G---a~V~~~~g~~~~~------~~~~~--~~~~v~~~ 251 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG---ADVTLITGPVSLL------TPPGV--KSIKVSTA 251 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC---CEEEEeCCCCccC------CCCCc--EEEEeccH
Confidence 45789999998 3679999999999999 8998877664321 12222 46788888
Q ss_pred hhH-HHHHH-hcCCCCEEEEcccccCccccc---cCh---hhhhhcccccchHHHHHhhhhcc
Q 022280 65 SGF-DAVAL-KFGQPDVVVNCAALSVPRVCE---NDP---DSAMSINVPSSLVNWLSSFTENK 119 (300)
Q Consensus 65 ~~~-~~~~~-~~~~~d~vih~a~~~~~~~~~---~~~---~~~~~~nv~~~~~~l~~~~~~~~ 119 (300)
+++ +.+++ .++++|++||+||+.++.... .+. ...+.+|+..+- .++...++..
T Consensus 252 ~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~p-dil~~l~~~~ 313 (390)
T TIGR00521 252 EEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNP-DIIAEVRKIK 313 (390)
T ss_pred HHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCc-HHHHHHHhhC
Confidence 877 65663 345799999999998653211 111 123456666664 7777776543
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-06 Score=76.51 Aligned_cols=72 Identities=25% Similarity=0.245 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.+++|+||||+|+||+.+++.|+++ |. .++++..|+.++...+..++. .+|+.+ +.+.+. ++|+|
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv--~~lilv~R~~~rl~~La~el~------~~~i~~---l~~~l~---~aDiV 219 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGV--AELLLVARQQERLQELQAELG------GGKILS---LEEALP---EADIV 219 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCC--CEEEEEcCCHHHHHHHHHHhc------cccHHh---HHHHHc---cCCEE
Confidence 5689999999999999999999865 42 578888888666655544321 233332 344444 89999
Q ss_pred EEccccc
Q 022280 81 VNCAALS 87 (300)
Q Consensus 81 ih~a~~~ 87 (300)
||+++..
T Consensus 220 v~~ts~~ 226 (340)
T PRK14982 220 VWVASMP 226 (340)
T ss_pred EECCcCC
Confidence 9999864
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.3e-06 Score=71.87 Aligned_cols=116 Identities=19% Similarity=0.169 Sum_probs=73.8
Q ss_pred CeEEEEcCCccchHHHHHhhhh-ccCCCceeeecCCCCCchhhhhhcCC-CceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHHSTPLPQLLLDALP-HSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~-~g~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
|+|+|+||||.+|++++..|+. .+.. +++++.++++.......+..+ .....+.+ .+.+++.+.++ ++|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~-~el~L~d~~~~~~g~alDl~~~~~~~~i~~--~~~~d~~~~l~---~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAG-SELSLYDIAPVTPGVAVDLSHIPTAVKIKG--FSGEDPTPALE---GADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCc-cEEEEEecCCCCcceehhhhcCCCCceEEE--eCCCCHHHHcC---CCCEEE
Confidence 6899999999999999988854 2321 577777776432110011101 11111222 22233333333 899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
.++|..... .......+..|..... ++++++.+.+.+++|.+.|
T Consensus 75 itaG~~~~~--~~~R~dll~~N~~i~~-~ii~~i~~~~~~~ivivvs 118 (312)
T PRK05086 75 ISAGVARKP--GMDRSDLFNVNAGIVK-NLVEKVAKTCPKACIGIIT 118 (312)
T ss_pred EcCCCCCCC--CCCHHHHHHHHHHHHH-HHHHHHHHhCCCeEEEEcc
Confidence 999975432 1245567888888874 9999999999888888876
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=71.45 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=48.0
Q ss_pred CCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCCCCEEEEcccc
Q 022280 11 GTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQPDVVVNCAAL 86 (300)
Q Consensus 11 atG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~~d~vih~a~~ 86 (300)
+||+||.+++++|+++| ++|++..+... .. ..+ ...+|+.+.+++++++ +.++++|++||+||+
T Consensus 23 SSGgIG~AIA~~la~~G---a~Vvlv~~~~~-l~----~~~----~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv 90 (227)
T TIGR02114 23 STGHLGKIITETFLSAG---HEVTLVTTKRA-LK----PEP----HPNLSIREIETTKDLLITLKELVQEHDILIHSMAV 90 (227)
T ss_pred cccHHHHHHHHHHHHCC---CEEEEEcChhh-cc----ccc----CCcceeecHHHHHHHHHHHHHHcCCCCEEEECCEe
Confidence 48999999999999999 88988765311 10 000 1357888877665544 446789999999997
Q ss_pred cCc
Q 022280 87 SVP 89 (300)
Q Consensus 87 ~~~ 89 (300)
...
T Consensus 91 ~d~ 93 (227)
T TIGR02114 91 SDY 93 (227)
T ss_pred ccc
Confidence 654
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=8e-06 Score=70.13 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCce-eeecCCCC---CchhhhhhcCC---CceeEEEeecCCchhHHHHHHhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATHHST---PLPQLLLDALP---HSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~-v~~~~r~~---~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
++++++|+|| |++|++++..|++.| ++ |++..|+. ++...+.+.+. ..+.....|+.+.+++...++
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G---~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-- 198 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDG---AKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIA-- 198 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC---CCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhc--
Confidence 4678999998 899999999999999 65 99999986 44444444332 233345678877666655554
Q ss_pred CCCCEEEEcccc
Q 022280 75 GQPDVVVNCAAL 86 (300)
Q Consensus 75 ~~~d~vih~a~~ 86 (300)
..|+|||+-..
T Consensus 199 -~~DilINaTp~ 209 (289)
T PRK12548 199 -SSDILVNATLV 209 (289)
T ss_pred -cCCEEEEeCCC
Confidence 68999998544
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.6e-05 Score=66.97 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=70.2
Q ss_pred eEEEEcCCccchHHHHHhhhhccCC----CceeeecCCCCCchhhhhhcCCCceeEEEeecCCchh-------H-HHHHH
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGK----PYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSG-------F-DAVAL 72 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~----~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~-~~~~~ 72 (300)
+|.|+||+|.+|+.++..|+.+|.- .+++++.++++.. +.......|+.|... + ....+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~---------~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~ 72 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM---------KALEGVVMELQDCAFPLLKGVVITTDPEE 72 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc---------CccceeeeehhhhcccccCCcEEecChHH
Confidence 7999999999999999999987631 0358888876510 011223445544310 0 11223
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhc-cCC-eEEEee
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-KEN-LLIHLS 127 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~-~~v~~S 127 (300)
.+.++|+|||+||..... .....+.+..|+.-. +++.+.+.+. +.. .++.+|
T Consensus 73 ~~~~aDiVVitAG~~~~~--g~tR~dll~~N~~i~-~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 73 AFKDVDVAILVGAFPRKP--GMERADLLRKNAKIF-KEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred HhCCCCEEEEeCCCCCCc--CCcHHHHHHHhHHHH-HHHHHHHHHhCCCCeEEEEeC
Confidence 334999999999975432 224556788888776 3888888887 354 444444
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.8e-05 Score=68.87 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=97.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCC----CceeeecCCCCCc--hhhhhhcCCCce-eEE-EeecCCchhHHHHHHhc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGK----PYDVAATHHSTPL--PQLLLDALPHSF-VFF-DVDLKSGSGFDAVALKF 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~----~~~v~~~~r~~~~--~~~~~~~~~~~~-~~~-~~D~~~~~~~~~~~~~~ 74 (300)
.+||.|+|++|.+|+.++-.|+..|.- ..++++.+..++. +......+.+.. .+. ...++. ++ .+.+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~-~~----~~~~ 76 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITD-DP----NVAF 76 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEec-Cc----HHHh
Confidence 468999999999999999999988731 0168888875322 221111111100 000 001111 11 1223
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC-C-eEEEeeccc-cccCCCCCCCCCCC-CCCCCh
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE-N-LLIHLSTDQ-VYEGVKSFYKEEDE-IAPVNV 150 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~-~-~~v~~SS~~-~~~~~~~~~~E~~~-~~p~~~ 150 (300)
.+.|+||.+||..... .....+.+..|+.-. ..+.+.+.+.+. . .+|.+|-.. +.. ...-+... ..+...
T Consensus 77 ~daDivvitaG~~~k~--g~tR~dll~~N~~i~-~~i~~~i~~~~~~~~iiivvsNPvD~~t---~~~~k~sg~~p~~~V 150 (322)
T cd01338 77 KDADWALLVGAKPRGP--GMERADLLKANGKIF-TAQGKALNDVASRDVKVLVVGNPCNTNA---LIAMKNAPDIPPDNF 150 (322)
T ss_pred CCCCEEEEeCCCCCCC--CCcHHHHHHHHHHHH-HHHHHHHHhhCCCCeEEEEecCcHHHHH---HHHHHHcCCCChHhe
Confidence 3899999999975432 124456678887766 378888877663 4 455555211 000 00011111 234568
Q ss_pred hHHHHHHHHHHHHHHc----CCceeEeeeeeeCCCC
Q 022280 151 YGKSKVAAEKFIYEKC----SNFAILRSSIIYGPQT 182 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~----~~~~ilR~~~v~G~~~ 182 (300)
||.+++..+++...++ .+...+|..+|||++.
T Consensus 151 iG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG 186 (322)
T cd01338 151 TAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS 186 (322)
T ss_pred EEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc
Confidence 8889998888776554 4556688889999874
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.6e-05 Score=65.37 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=71.6
Q ss_pred eEEEEcCCccchHHHHHhhhhccCC----CceeeecCCCCCchhhhhhcCCCceeEEEeecCCch-hH-------HHHHH
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGK----PYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS-GF-------DAVAL 72 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~----~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~-------~~~~~ 72 (300)
+|.|+|++|.+|+.++..|+..+.- -+++++.++.++.. .......|+.|.. .+ ....+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~---------~a~g~~~Dl~d~~~~~~~~~~~~~~~~~ 71 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK---------VLEGVVMELMDCAFPLLDGVVPTHDPAV 71 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc---------ccceeEeehhcccchhcCceeccCChHH
Confidence 5899999999999999999986630 02588888764321 1122455665554 11 01123
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CC-eEEEee
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-EN-LLIHLS 127 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~-~~v~~S 127 (300)
.+.+.|+|||+||..... .....+.+..|+.-. +.+.+...+.. .. .++.+|
T Consensus 72 ~~~~aDiVVitAG~~~~~--~~tr~~ll~~N~~i~-k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 72 AFTDVDVAILVGAFPRKE--GMERRDLLSKNVKIF-KEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred HhCCCCEEEEcCCCCCCC--CCcHHHHHHHHHHHH-HHHHHHHHhhCCCCeEEEEeC
Confidence 345899999999975432 223567788888776 38888888873 54 444444
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.6e-05 Score=65.85 Aligned_cols=96 Identities=20% Similarity=0.106 Sum_probs=59.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
|++|+|.||||++|+.|++.|.++++.+.++..+.+..+..+.+. +.. ......|+.+ . .++ ++|+||.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~--~~g-~~i~v~d~~~----~-~~~---~vDvVf~ 69 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS--FKG-KELKVEDLTT----F-DFS---GVDIALF 69 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee--eCC-ceeEEeeCCH----H-HHc---CCCEEEE
Confidence 579999999999999999999999865456677766533322221 111 2223334432 1 123 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecc
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTD 129 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (300)
+++.... ..++....+.|+ .+|=.||.
T Consensus 70 A~g~g~s-------------------~~~~~~~~~~G~-~VIDlS~~ 96 (334)
T PRK14874 70 SAGGSVS-------------------KKYAPKAAAAGA-VVIDNSSA 96 (334)
T ss_pred CCChHHH-------------------HHHHHHHHhCCC-EEEECCch
Confidence 8763211 255555555666 66666664
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=2e-05 Score=50.59 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=25.2
Q ss_pred ccCCCCCccccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 261 RGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 261 ~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
++..++...+.|++|++++|||+| ++|+++|+++.+|+.
T Consensus 17 rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~ 56 (62)
T PF13950_consen 17 RRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQK 56 (62)
T ss_dssp --TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHH
T ss_pred CCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHH
Confidence 345566778899999999999999 999999999999874
|
... |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.1e-05 Score=66.30 Aligned_cols=103 Identities=23% Similarity=0.241 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEE-EeecCCchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFF-DVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+|++|+|+||||++|+.+++.|.+... ++++++.++.+....+.+..+ .+... ..++.+.+.. .. .++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~--~elv~v~~~~~~g~~l~~~~~-~~~~~~~~~~~~~~~~--~~---~~vD~V 72 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPE--VEIVAVTSRSSAGKPLSDVHP-HLRGLVDLVLEPLDPE--IL---AGADVV 72 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCC--ceEEEEECccccCcchHHhCc-ccccccCceeecCCHH--Hh---cCCCEE
Confidence 358999999999999999999998632 777666654333222222211 11111 2233333321 22 279999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccc
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVY 132 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~ 132 (300)
|.|..... . .+++..+.+.|+ ++|=.|+..-+
T Consensus 73 f~alP~~~-----------~--------~~~v~~a~~aG~-~VID~S~~fR~ 104 (343)
T PRK00436 73 FLALPHGV-----------S--------MDLAPQLLEAGV-KVIDLSADFRL 104 (343)
T ss_pred EECCCcHH-----------H--------HHHHHHHHhCCC-EEEECCcccCC
Confidence 99754210 0 366666666665 78888875544
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.7e-05 Score=73.66 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=58.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCC-----------CceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGK-----------PYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~-----------~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (300)
+++|+|.|+ |++|+..++.|++...- +..|.+.+++.+..+.+.+.+ .++..++.|++|.+++.+.+
T Consensus 569 ~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~-~~~~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 569 SQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI-ENAEAVQLDVSDSESLLKYV 646 (1042)
T ss_pred CCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc-CCCceEEeecCCHHHHHHhh
Confidence 679999995 99999999999876420 023777787766666665544 24556899999987776665
Q ss_pred HhcCCCCEEEEcccc
Q 022280 72 LKFGQPDVVVNCAAL 86 (300)
Q Consensus 72 ~~~~~~d~vih~a~~ 86 (300)
+ ++|+||.|...
T Consensus 647 ~---~~DaVIsalP~ 658 (1042)
T PLN02819 647 S---QVDVVISLLPA 658 (1042)
T ss_pred c---CCCEEEECCCc
Confidence 5 79999999754
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.9e-05 Score=68.31 Aligned_cols=75 Identities=21% Similarity=0.204 Sum_probs=52.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-CchhhhhhcCC-CceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLDALP-HSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
|++++|+|+|+++ +|..+++.|+++| ++|++.++.. +......+.+. .++.++..|..+ .. .+++|
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G---~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~---~~~~d 70 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLG---AKVILTDEKEEDQLKEALEELGELGIELVLGEYPE-----EF---LEGVD 70 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCC---CEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch-----hH---hhcCC
Confidence 3568999999888 9999999999999 8999998874 22222222221 234556666655 11 23799
Q ss_pred EEEEccccc
Q 022280 79 VVVNCAALS 87 (300)
Q Consensus 79 ~vih~a~~~ 87 (300)
+||++++..
T Consensus 71 ~vv~~~g~~ 79 (450)
T PRK14106 71 LVVVSPGVP 79 (450)
T ss_pred EEEECCCCC
Confidence 999998863
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=54.86 Aligned_cols=146 Identities=21% Similarity=0.195 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeec--CCch-h-HHHHHHhc--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL--KSGS-G-FDAVALKF-- 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~--~~~~-~-~~~~~~~~-- 74 (300)
|.--||+|.||-|-+|+++++.+..++ |-|.-.+-+..+.. ...+ .+..|- +..+ + +++.-+.+
T Consensus 1 msagrVivYGGkGALGSacv~~Fkann---ywV~siDl~eNe~A------d~sI-~V~~~~swtEQe~~v~~~vg~sL~g 70 (236)
T KOG4022|consen 1 MSAGRVIVYGGKGALGSACVEFFKANN---YWVLSIDLSENEQA------DSSI-LVDGNKSWTEQEQSVLEQVGSSLQG 70 (236)
T ss_pred CCCceEEEEcCcchHhHHHHHHHHhcC---eEEEEEeecccccc------cceE-EecCCcchhHHHHHHHHHHHHhhcc
Confidence 455689999999999999999999999 77766555432211 0111 123321 1111 1 22222222
Q ss_pred CCCCEEEEcccccCccc-----cccChhhhhhcccc-cchHHHHHhhhhccCCeEEEeec-cccccCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV-----CENDPDSAMSINVP-SSLVNWLSSFTENKENLLIHLST-DQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~-~~~~~l~~~~~~~~~~~~v~~SS-~~~~~~~~~~~~E~~~~~p 147 (300)
.++|.||+.||-..... ...+.+.++.-.+- +++ ...-+..+.+.+-++.+.. -...++.++
T Consensus 71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaI-sa~lAt~HLK~GGLL~LtGAkaAl~gTPg---------- 139 (236)
T KOG4022|consen 71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAI-SAKLATTHLKPGGLLQLTGAKAALGGTPG---------- 139 (236)
T ss_pred cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHH-HHHHHHhccCCCceeeecccccccCCCCc----------
Confidence 37999999998543211 11122333322221 111 1111122233344444443 334555544
Q ss_pred CChhHHHHHHHHHHHHHHcC
Q 022280 148 VNVYGKSKVAAEKFIYEKCS 167 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~ 167 (300)
.-.|+.+|.++.++.++++.
T Consensus 140 MIGYGMAKaAVHqLt~SLaa 159 (236)
T KOG4022|consen 140 MIGYGMAKAAVHQLTSSLAA 159 (236)
T ss_pred ccchhHHHHHHHHHHHHhcc
Confidence 56899999999999998754
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.3e-05 Score=56.20 Aligned_cols=99 Identities=26% Similarity=0.342 Sum_probs=55.2
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
||.|+||||++|+.|++.|++.-+ ++++.+..+.+ .-..+....+..-.+....+.+. +.+. +. ++|+||.|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~--~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~-~~---~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD--FELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDA-DPEE-LS---DVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST--EEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEET-SGHH-HT---TESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC--ccEEEeeeeccccCCeeehhccccccccceeEeec-chhH-hh---cCCEEEec
Confidence 689999999999999999999432 67655554433 22222222220000112222221 1122 23 89999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
.+... ...+.+.+.+.|+ ++|=.|+..
T Consensus 74 ~~~~~-------------------~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 74 LPHGA-------------------SKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp SCHHH-------------------HHHHHHHHHHTTS-EEEESSSTT
T ss_pred CchhH-------------------HHHHHHHHhhCCc-EEEeCCHHH
Confidence 64210 0366666677787 666666543
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.2e-05 Score=59.43 Aligned_cols=75 Identities=17% Similarity=0.348 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCC-ceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH-SFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.+++++|.|+ |..|+.++..|.+.|. -+|+++.|+.++...+.+.++. .+. ..++.+ +.+... ..|+|
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~--~~i~i~nRt~~ra~~l~~~~~~~~~~--~~~~~~---~~~~~~---~~Div 79 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGA--KEITIVNRTPERAEALAEEFGGVNIE--AIPLED---LEEALQ---EADIV 79 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTS--SEEEEEESSHHHHHHHHHHHTGCSEE--EEEGGG---HCHHHH---TESEE
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHcCccccc--eeeHHH---HHHHHh---hCCeE
Confidence 5789999995 8899999999999993 2499999998888887776522 233 223333 334445 88999
Q ss_pred EEccccc
Q 022280 81 VNCAALS 87 (300)
Q Consensus 81 ih~a~~~ 87 (300)
|++.+..
T Consensus 80 I~aT~~~ 86 (135)
T PF01488_consen 80 INATPSG 86 (135)
T ss_dssp EE-SSTT
T ss_pred EEecCCC
Confidence 9986643
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.2e-05 Score=58.93 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=47.7
Q ss_pred CCCCeEEEEcC----------------CccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCc
Q 022280 1 MSKKRVLVVGG----------------TGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64 (300)
Q Consensus 1 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (300)
|.+++||||+| ||-.|.+|++.++.+| ++|+....+.. .. .+..+..+. +...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~G---a~V~li~g~~~-~~-----~p~~~~~i~--v~sa 69 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRG---AEVTLIHGPSS-LP-----PPPGVKVIR--VESA 69 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT----EEEEEE-TTS----------TTEEEEE---SSH
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCC---CEEEEEecCcc-cc-----ccccceEEE--ecch
Confidence 56899999965 6999999999999999 78887766522 11 133454333 4554
Q ss_pred hhHH-HHHHhcCCCCEEEEcccccCccc
Q 022280 65 SGFD-AVALKFGQPDVVVNCAALSVPRV 91 (300)
Q Consensus 65 ~~~~-~~~~~~~~~d~vih~a~~~~~~~ 91 (300)
+++. .+.+.+...|++||+|++.++..
T Consensus 70 ~em~~~~~~~~~~~Di~I~aAAVsDf~p 97 (185)
T PF04127_consen 70 EEMLEAVKELLPSADIIIMAAAVSDFRP 97 (185)
T ss_dssp HHHHHHHHHHGGGGSEEEE-SB--SEEE
T ss_pred hhhhhhhccccCcceeEEEecchhheee
Confidence 4433 33344456899999999987643
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00016 Score=63.21 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=58.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
|++|.|+||||++|+.|++.|.++++...++..+. +.+...+... +.. ...++.+.+.. . ++ ++|+||-
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~-s~~~aG~~l~-~~~----~~l~~~~~~~~-~-~~---~vD~vFl 72 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLA-SSESAGHSVP-FAG----KNLRVREVDSF-D-FS---QVQLAFF 72 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE-CcccCCCeec-cCC----cceEEeeCChH-H-hc---CCCEEEE
Confidence 47999999999999999999998886544544443 3222211111 111 23444444322 1 23 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecccc
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQV 131 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~ 131 (300)
+.+.. .+ ..+++.+.+.|+ ++|=.||..-
T Consensus 73 a~p~~---~s----------------~~~v~~~~~~G~-~VIDlS~~fR 101 (336)
T PRK05671 73 AAGAA---VS----------------RSFAEKARAAGC-SVIDLSGALP 101 (336)
T ss_pred cCCHH---HH----------------HHHHHHHHHCCC-eEEECchhhc
Confidence 76521 00 256666766777 6777777554
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00016 Score=63.84 Aligned_cols=38 Identities=34% Similarity=0.467 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
|++++|+|+||||++|+.|++.|.+... .++.++.++.
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~--~el~~~~~s~ 38 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPW--FEVTALAASE 38 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCC--ceEEEEEcCh
Confidence 6789999999999999999999997653 5777774543
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0002 Score=69.81 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=100.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc--hhhhh----hcCCCceeEEEeecCCchhHHHHHH---hc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQLLL----DALPHSFVFFDVDLKSGSGFDAVAL---KF 74 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~--~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~---~~ 74 (300)
|..+|+||-|+.|-.|++.|.++|. -.++.+.|+.-+ -+.+. ..-+..+..-..|++..+....+++ ++
T Consensus 1769 ksYii~GGLGGFGLELaqWLi~RGa--r~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl 1846 (2376)
T KOG1202|consen 1769 KSYIIVGGLGGFGLELAQWLIQRGA--RKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKL 1846 (2376)
T ss_pred ceEEEeccccchhHHHHHHHHhcCc--eEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhc
Confidence 5789999999999999999999996 356677777422 11111 1112233333445665555444444 45
Q ss_pred CCCCEEEEcccccCc----cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVP----RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 75 ~~~d~vih~a~~~~~----~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+.+-.|||+|..... +....++++..+....||+ ++-...++. -.+-||.+||.+.=..+.+ .
T Consensus 1847 ~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti-~LD~~sRe~C~~LdyFv~FSSvscGRGN~G----------Q 1915 (2376)
T KOG1202|consen 1847 GPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTI-NLDRVSREICPELDYFVVFSSVSCGRGNAG----------Q 1915 (2376)
T ss_pred ccccchhhHHHHHHhhhhcccChhHHHhhhccceeeee-ehhhhhhhhCcccceEEEEEeecccCCCCc----------c
Confidence 678999999987643 2344456677788888886 776666652 3467899998654333333 7
Q ss_pred ChhHHHHHHHHHHHHHH
Q 022280 149 NVYGKSKVAAEKFIYEK 165 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~ 165 (300)
+.||.+..++|+++.+-
T Consensus 1916 tNYG~aNS~MERiceqR 1932 (2376)
T KOG1202|consen 1916 TNYGLANSAMERICEQR 1932 (2376)
T ss_pred cccchhhHHHHHHHHHh
Confidence 78999999999999764
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.59 E-value=1.8e-05 Score=60.37 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=70.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCcee-EEEeecCCchhHHHHHHhcCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFV-FFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~-~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
|||.|+|++|.+|++++-.|+..+.- .++++.+++.+........+ ..... .+.. .+.+ .+.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~-~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~~~-------~~~~a 70 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA-DEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS--GDYE-------ALKDA 70 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE--SSGG-------GGTTE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-CceEEeccCcccceeeehhhhhhhhhccccccccc--cccc-------ccccc
Confidence 68999999999999999999999753 57888888754333221111 11111 1111 2222 22389
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCe-EEEee
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL-LIHLS 127 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~-~v~~S 127 (300)
|+||.+||...... ....+.++.|..-.. ++.+.+.+.+... ++.+|
T Consensus 71 Divvitag~~~~~g--~sR~~ll~~N~~i~~-~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 71 DIVVITAGVPRKPG--MSRLDLLEANAKIVK-EIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp SEEEETTSTSSSTT--SSHHHHHHHHHHHHH-HHHHHHHHHSTTSEEEE-S
T ss_pred cEEEEecccccccc--ccHHHHHHHhHhHHH-HHHHHHHHhCCccEEEEeC
Confidence 99999999754321 235567788877663 8888888877653 44443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00013 Score=64.81 Aligned_cols=105 Identities=19% Similarity=0.345 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++|+|.|.||||++|+.|++.|.++-+ .++..+.++...-+.+....+ .....|+.+.++++.. .+.++|+||
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~--~el~~l~s~~saG~~i~~~~~---~l~~~~~~~~~~~~~~--~~~~~DvVf 109 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD--FEITVMTADRKAGQSFGSVFP---HLITQDLPNLVAVKDA--DFSDVDAVF 109 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC--CeEEEEEChhhcCCCchhhCc---cccCccccceecCCHH--HhcCCCEEE
Confidence 357999999999999999999999833 788877765333222211111 1122343333222221 123899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccC
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEG 134 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~ 134 (300)
-+.+.. .. .+++..+ +.++ ++|-.|+..-+.+
T Consensus 110 ~Alp~~------------------~s-~~i~~~~-~~g~-~VIDlSs~fRl~~ 141 (381)
T PLN02968 110 CCLPHG------------------TT-QEIIKAL-PKDL-KIVDLSADFRLRD 141 (381)
T ss_pred EcCCHH------------------HH-HHHHHHH-hCCC-EEEEcCchhccCC
Confidence 976521 01 3666665 3454 8999998775544
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0056 Score=56.39 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=88.4
Q ss_pred CCeEEEEcCC-ccchHHHHHhhhhccCCCceeeecCCCCC-chhhhhhcC-------CCceeEEEeecCCchhHHHHHHh
Q 022280 3 KKRVLVVGGT-GYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLLDAL-------PHSFVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 3 ~~~ilItGat-G~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 73 (300)
.+.+|||||+ |-||..+++.|++.| .+|+++.-+-+ ....+...+ +.....+.++...+.+++.+++-
T Consensus 396 d~valVTGA~~gSIaa~Vv~~LL~gG---AtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIew 472 (866)
T COG4982 396 DKVALVTGASKGSIAAAVVARLLAGG---ATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEW 472 (866)
T ss_pred cceEEEecCCCcchHHHHHHHHHhCC---cEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHH
Confidence 4678999996 999999999999999 78888776633 222222211 23344567788877777766642
Q ss_pred c------------------CCCCEEEEcccccCcc-ccccChhh--hhhcccccchHHHHHhhhhc----cCC---eEEE
Q 022280 74 F------------------GQPDVVVNCAALSVPR-VCENDPDS--AMSINVPSSLVNWLSSFTEN----KEN---LLIH 125 (300)
Q Consensus 74 ~------------------~~~d~vih~a~~~~~~-~~~~~~~~--~~~~nv~~~~~~l~~~~~~~----~~~---~~v~ 125 (300)
. -.+|.+|-+|++.... .....++. .+++=+-..+ .++-..++. ++. ++|.
T Consensus 473 Ig~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~-Rliggl~~~~s~r~v~~R~hVVL 551 (866)
T COG4982 473 IGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVL-RLIGGLKKQGSSRGVDTRLHVVL 551 (866)
T ss_pred hccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHH-HHHHHhhhhccccCcccceEEEe
Confidence 1 0378999998875432 11222221 1222111111 333333332 231 4565
Q ss_pred eeccc--cccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC
Q 022280 126 LSTDQ--VYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS 167 (300)
Q Consensus 126 ~SS~~--~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~ 167 (300)
..|.. .||. .-.|+.||+..|.++..|..
T Consensus 552 PgSPNrG~FGg-------------DGaYgEsK~aldav~~RW~s 582 (866)
T COG4982 552 PGSPNRGMFGG-------------DGAYGESKLALDAVVNRWHS 582 (866)
T ss_pred cCCCCCCccCC-------------CcchhhHHHHHHHHHHHhhc
Confidence 56532 3333 34799999999999987765
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00067 Score=58.87 Aligned_cols=118 Identities=12% Similarity=0.135 Sum_probs=68.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC--CchhhhhhcCCCceeE--EEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST--PLPQLLLDALPHSFVF--FDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~--~~~~~~~~~~~~~~~~--~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|+|.|+|+||.+|..++..|+..|.. .+|++.++.. +........+.+.... ....++-..+.+. + .+.|+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~-~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l---~~aDi 75 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV-KEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-V---AGSDI 75 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-CEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-h---CCCCE
Confidence 68999999999999999999999853 4688888853 2221111000000000 0011211111232 3 38999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEeecc
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLSTD 129 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (300)
||-++|..... .....+.+..|+.-.. .+++.+.+.... .+|.+++.
T Consensus 76 Viitag~p~~~--~~~r~dl~~~n~~i~~-~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 76 VIITAGVPRKE--GMSRLDLAKKNAKIVK-KYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred EEEecCCCCCC--CCCHHHHHHHHHHHHH-HHHHHHHHHCCCeEEEEeCCc
Confidence 99999864321 1123455677776653 777776665443 56666653
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00034 Score=54.13 Aligned_cols=76 Identities=13% Similarity=0.267 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++++++|+|+ |.+|+.+++.|++.|. .+|++.+|+++....+.+.+... .+..+..+. .+.. .++|+||
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~--~~v~v~~r~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~---~~~Dvvi 86 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGA--AKIVIVNRTLEKAKALAERFGEL--GIAIAYLDL---EELL---AEADLII 86 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHhhc--ccceeecch---hhcc---ccCCEEE
Confidence 4578999996 9999999999999852 67888898876666555443221 012233332 2223 3899999
Q ss_pred EcccccC
Q 022280 82 NCAALSV 88 (300)
Q Consensus 82 h~a~~~~ 88 (300)
++.....
T Consensus 87 ~~~~~~~ 93 (155)
T cd01065 87 NTTPVGM 93 (155)
T ss_pred eCcCCCC
Confidence 9976543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00043 Score=61.04 Aligned_cols=102 Identities=22% Similarity=0.254 Sum_probs=58.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhhcCCCceeEE-EeecCCchhHHHHHHhcCCCCEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDALPHSFVFF-DVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
|+|.|.||||++|+.+++.|.+.-. ++++.+ .++......+.+..+ .+... ..++.+. +.+++.+ ++|+||
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~--~el~~l~~s~~sagk~~~~~~~-~l~~~~~~~~~~~-~~~~~~~---~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE--VEITYLVSSRESAGKPVSEVHP-HLRGLVDLNLEPI-DEEEIAE---DADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC--ceEEEEeccchhcCCChHHhCc-cccccCCceeecC-CHHHhhc---CCCEEE
Confidence 5899999999999999999997622 677743 433222222222121 11101 1122221 1233333 799999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccc
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVY 132 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~ 132 (300)
.|..... . ..++..+.+.|+ ++|=.|+..-+
T Consensus 74 ~alP~~~------------------s-~~~~~~~~~~G~-~VIDlS~~fR~ 104 (346)
T TIGR01850 74 LALPHGV------------------S-AELAPELLAAGV-KVIDLSADFRL 104 (346)
T ss_pred ECCCchH------------------H-HHHHHHHHhCCC-EEEeCChhhhc
Confidence 9864210 0 366777766775 88888876543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=57.71 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+.++|+|.| .|.+|+++++.|+..|. -++++.+++
T Consensus 23 ~~~~VlIiG-~GglGs~va~~La~aGv--g~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVG-AGALGAANAEALVRAGI--GKLTIADRD 57 (338)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCC--CEEEEEcCC
Confidence 467899999 57799999999999993 267777775
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0032 Score=47.05 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=66.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
++++++.| +| -|.++++.|.+.| ++|++++.++...+...+. .+..+..|+.+++ .++-+ +.|.|+-
T Consensus 17 ~~kileIG-~G-fG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~---~~~~v~dDlf~p~--~~~y~---~a~liys 83 (134)
T PRK04148 17 NKKIVELG-IG-FYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL---GLNAFVDDLFNPN--LEIYK---NAKLIYS 83 (134)
T ss_pred CCEEEEEE-ec-CCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh---CCeEEECcCCCCC--HHHHh---cCCEEEE
Confidence 46899999 66 8999999999999 8999999997765544433 4567899999986 22333 7888876
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEe
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHL 126 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~ 126 (300)
+= .|.+.+ ..+++.+++.++.-+|..
T Consensus 84 ir----------pp~el~--------~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 84 IR----------PPRDLQ--------PFILELAKKINVPLIIKP 109 (134)
T ss_pred eC----------CCHHHH--------HHHHHHHHHcCCCEEEEc
Confidence 51 222322 367777877787654443
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00085 Score=58.93 Aligned_cols=71 Identities=18% Similarity=0.091 Sum_probs=44.4
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEcc
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCA 84 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a 84 (300)
+|+|.||||++|+.|++.|.++++.+.++..+.+..+.-..+. +.. ......|+.. . .++ ++|+||.++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~--~~~-~~~~~~~~~~----~-~~~---~~D~v~~a~ 69 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT--FKG-KELEVNEAKI----E-SFE---GIDIALFSA 69 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee--eCC-eeEEEEeCCh----H-Hhc---CCCEEEECC
Confidence 5899999999999999999998865455554444432222221 111 2334444431 1 223 899999998
Q ss_pred cc
Q 022280 85 AL 86 (300)
Q Consensus 85 ~~ 86 (300)
+.
T Consensus 70 g~ 71 (339)
T TIGR01296 70 GG 71 (339)
T ss_pred CH
Confidence 74
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=57.51 Aligned_cols=77 Identities=23% Similarity=0.232 Sum_probs=51.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcC--CCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFG--QPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~d~v 80 (300)
+.+|||+||+|.+|+..++-+...| +.++++..++++.+ +...++.. +..|..+.+-.+.+.+..+ ++|+|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G---~~~v~~~~s~~k~~-~~~~lGAd---~vi~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALG---ATVVAVVSSSEKLE-LLKELGAD---HVINYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcC---CcEEEEecCHHHHH-HHHhcCCC---EEEcCCcccHHHHHHHHcCCCCceEE
Confidence 5789999999999999999999999 77777777766666 44444332 2223344332233323222 59999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
+.+.|.
T Consensus 216 ~D~vG~ 221 (326)
T COG0604 216 LDTVGG 221 (326)
T ss_pred EECCCH
Confidence 998773
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=58.01 Aligned_cols=77 Identities=26% Similarity=0.217 Sum_probs=54.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh-cCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK-FGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~~~d~vi 81 (300)
+++|||.||+|.+|++.++-+...| ...+++.++.+..+ +.+.++. . ...|..+++..+...+. .+++|+|+
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~~~---~~~v~t~~s~e~~~-l~k~lGA--d-~vvdy~~~~~~e~~kk~~~~~~DvVl 230 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAKHAG---AIKVVTACSKEKLE-LVKKLGA--D-EVVDYKDENVVELIKKYTGKGVDVVL 230 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHhcC---CcEEEEEcccchHH-HHHHcCC--c-EeecCCCHHHHHHHHhhcCCCccEEE
Confidence 5789999999999999999999998 55666666655444 3334332 1 45677775544444332 34799999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
+|.|.
T Consensus 231 D~vg~ 235 (347)
T KOG1198|consen 231 DCVGG 235 (347)
T ss_pred ECCCC
Confidence 99884
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0018 Score=56.90 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+.++|+|.| .|++|+++++.|+..|. -++++.+++
T Consensus 23 ~~~~VlVvG-~GglGs~va~~La~aGv--g~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIG-AGALGTANAEMLVRAGV--GKVTIVDRD 57 (339)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence 467899999 59999999999999993 277777775
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0015 Score=56.19 Aligned_cols=103 Identities=20% Similarity=0.249 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+|+||.|.||+|+.|..|++.|..+-+ +++.....+...-..+.+..+.-...+...+...+ .+.+ ..+++|+||
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~--ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~-~~~~--~~~~~DvvF 75 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD--VELILISSRERAGKPVSDVHPNLRGLVDLPFQTID-PEKI--ELDECDVVF 75 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC--eEEEEeechhhcCCchHHhCcccccccccccccCC-hhhh--hcccCCEEE
Confidence 478999999999999999999999875 67665554432333333322221111112122211 1222 123799999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecc
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTD 129 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (300)
-+---.. + ..++....+.|+ ++|=+|..
T Consensus 76 lalPhg~---s----------------~~~v~~l~~~g~-~VIDLSad 103 (349)
T COG0002 76 LALPHGV---S----------------AELVPELLEAGC-KVIDLSAD 103 (349)
T ss_pred EecCchh---H----------------HHHHHHHHhCCC-eEEECCcc
Confidence 8742110 0 366666666677 47777754
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0012 Score=56.53 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++++|+|+ |.+|++++..|+..|. .+|++..|+.++...+.+.+..... +..++ +....+ ...|+||
T Consensus 122 ~~k~vlVlGa-Gg~a~ai~~aL~~~g~--~~V~v~~R~~~~a~~l~~~~~~~~~-~~~~~----~~~~~~---~~~DivI 190 (278)
T PRK00258 122 KGKRILILGA-GGAARAVILPLLDLGV--AEITIVNRTVERAEELAKLFGALGK-AELDL----ELQEEL---ADFDLII 190 (278)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhhhccc-eeecc----cchhcc---ccCCEEE
Confidence 4578999995 9999999999999994 4799999987777666655432110 11111 111222 3789999
Q ss_pred Eccccc
Q 022280 82 NCAALS 87 (300)
Q Consensus 82 h~a~~~ 87 (300)
++....
T Consensus 191 naTp~g 196 (278)
T PRK00258 191 NATSAG 196 (278)
T ss_pred ECCcCC
Confidence 986543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00062 Score=62.46 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=56.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|+|.|+ |.+|+++++.|.+.| ++|++.+++++....+.+. ..+.++.+|.++.+.++.+- ..++|.||-+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g---~~v~vid~~~~~~~~~~~~--~~~~~~~gd~~~~~~l~~~~--~~~a~~vi~~ 72 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGEN---NDVTVIDTDEERLRRLQDR--LDVRTVVGNGSSPDVLREAG--AEDADLLIAV 72 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhh--cCEEEEEeCCCCHHHHHHcC--CCcCCEEEEe
Confidence 58999996 999999999999999 8899999887665555432 24667889998876655541 2378888887
Q ss_pred cc
Q 022280 84 AA 85 (300)
Q Consensus 84 a~ 85 (300)
..
T Consensus 73 ~~ 74 (453)
T PRK09496 73 TD 74 (453)
T ss_pred cC
Confidence 43
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0015 Score=55.20 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=43.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+++|.|+|++|.+|+.+++.+.+... .++++...+ ++..... -..++...++++++++ .+|+|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~--~elvav~d~~~~~~~~~----------~~~~i~~~~dl~~ll~---~~DvVi 65 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED--LELVAAVDRPGSPLVGQ----------GALGVAITDDLEAVLA---DADVLI 65 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC--CEEEEEEecCCcccccc----------CCCCccccCCHHHhcc---CCCEEE
Confidence 47999999999999999998886422 677765443 3222111 1123333344566654 789999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
++..
T Consensus 66 d~t~ 69 (257)
T PRK00048 66 DFTT 69 (257)
T ss_pred ECCC
Confidence 8863
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0025 Score=56.05 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceee
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVA 34 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~ 34 (300)
+.++|.|.||||++|+.|++.|.++++...++.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~ 38 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLK 38 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEE
Confidence 357899999999999999999999886434443
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0014 Score=56.95 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=70.4
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC-------CceeEEEeecCCchhHHHHHHhcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP-------HSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
++|.|.| +|.+|+.++..|+..|.. .++++.+++++....+...+. .... +.. .+ .+. + .+
T Consensus 1 ~kI~IIG-aG~vG~~~a~~l~~~g~~-~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~-i~~--~~---~~~-l---~~ 68 (306)
T cd05291 1 RKVVIIG-AGHVGSSFAYSLVNQGIA-DELVLIDINEEKAEGEALDLEDALAFLPSPVK-IKA--GD---YSD-C---KD 68 (306)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCC-CEEEEEeCCcchhhHhHhhHHHHhhccCCCeE-EEc--CC---HHH-h---CC
Confidence 4799999 599999999999999853 478999998766554433221 1111 111 12 222 2 38
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
.|+||+++|..... .....+.++.|+.-.. .+.+.+++.+.. .++.+|
T Consensus 69 aDIVIitag~~~~~--g~~R~dll~~N~~i~~-~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 69 ADIVVITAGAPQKP--GETRLDLLEKNAKIMK-SIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCEEEEccCCCCCC--CCCHHHHHHHHHHHHH-HHHHHHHHhCCCeEEEEec
Confidence 99999999875332 1234566777876653 788888776654 455555
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0037 Score=50.71 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
..++|+|.| .|.+|+++++.|+..|- -++++.+++
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv--~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGV--GTIVIVDDD 54 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCC--CeEEEecCC
Confidence 457899999 89999999999999993 267777765
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0018 Score=59.39 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|.|+ |.+|+.+++.|.+.| ++|++.+++++....+.+.. ..+..+.+|.++++.+++.- ..++|.||
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~---~~v~vid~~~~~~~~~~~~~-~~~~~i~gd~~~~~~L~~~~--~~~a~~vi 302 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEG---YSVKLIERDPERAEELAEEL-PNTLVLHGDGTDQELLEEEG--IDEADAFI 302 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHC-CCCeEEECCCCCHHHHHhcC--CccCCEEE
Confidence 3678999996 999999999999999 88999998877666555442 34566899999987655432 23788888
Q ss_pred Ecc
Q 022280 82 NCA 84 (300)
Q Consensus 82 h~a 84 (300)
-+.
T Consensus 303 ~~~ 305 (453)
T PRK09496 303 ALT 305 (453)
T ss_pred ECC
Confidence 653
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0017 Score=55.25 Aligned_cols=73 Identities=14% Similarity=0.263 Sum_probs=49.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+++++|+|+ |.+|++++..|++.| ++|++..|+.++...+.+.+...-.....++. .. ...++|+||+
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g---~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~------~~--~~~~~DivIn 184 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKAD---CNVIIANRTVSKAEELAERFQRYGEIQAFSMD------EL--PLHRVDLIIN 184 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHhhcCceEEechh------hh--cccCccEEEE
Confidence 578999997 899999999999999 88999999876666555443211000111111 11 1237899999
Q ss_pred ccccc
Q 022280 83 CAALS 87 (300)
Q Consensus 83 ~a~~~ 87 (300)
+.+..
T Consensus 185 atp~g 189 (270)
T TIGR00507 185 ATSAG 189 (270)
T ss_pred CCCCC
Confidence 98754
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0036 Score=54.52 Aligned_cols=117 Identities=14% Similarity=0.038 Sum_probs=69.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-----eeeecCCCCC--chhhhhhcCCCce-eEEE-eecCCchhHHHHHHh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-----DVAATHHSTP--LPQLLLDALPHSF-VFFD-VDLKSGSGFDAVALK 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-----~v~~~~r~~~--~~~~~~~~~~~~~-~~~~-~D~~~~~~~~~~~~~ 73 (300)
..||.|+|++|.+|+.++-.|+..|.- - ++++.+..+. ........+.+.. .... ..++ .++ .+.
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~-~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~----~~~ 76 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELF-GKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TDP----EEA 76 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcc-cCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cCh----HHH
Confidence 458999999999999999999988731 2 6888887542 1221111111110 0000 0011 111 222
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC-CeEEEeec
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE-NLLIHLST 128 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~-~~~v~~SS 128 (300)
+.+.|+||.+||..... .....+.+..|+.-. ..+.+.+.+... ..++.+-|
T Consensus 77 ~~daDvVVitAG~~~k~--g~tR~dll~~Na~i~-~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 77 FKDVDAALLVGAFPRKP--GMERADLLSKNGKIF-KEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred hCCCCEEEEeCCCCCCC--CCcHHHHHHHHHHHH-HHHHHHHHhhCCCCeEEEEeC
Confidence 33899999999975322 224556778887766 388888888765 44444433
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0017 Score=60.57 Aligned_cols=45 Identities=27% Similarity=0.318 Sum_probs=37.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL 50 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~ 50 (300)
.+++++|+|+ |.+|++++..|++.| ++|+++.|+.++...+.+.+
T Consensus 378 ~~k~vlIlGa-GGagrAia~~L~~~G---~~V~i~nR~~e~a~~la~~l 422 (529)
T PLN02520 378 AGKLFVVIGA-GGAGKALAYGAKEKG---ARVVIANRTYERAKELADAV 422 (529)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHh
Confidence 3578999997 899999999999999 88999999876666665554
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0021 Score=58.88 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-CCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.+++|+|||++| +|...++.|++.| ++|++.+++........+.+ ..++.+..+. ++.. ... .++|.|
T Consensus 4 ~~k~v~v~G~g~-~G~s~a~~l~~~G---~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~--~~~~---~~~--~~~d~v 72 (447)
T PRK02472 4 QNKKVLVLGLAK-SGYAAAKLLHKLG---ANVTVNDGKPFSENPEAQELLEEGIKVICGS--HPLE---LLD--EDFDLM 72 (447)
T ss_pred CCCEEEEEeeCH-HHHHHHHHHHHCC---CEEEEEcCCCccchhHHHHHHhcCCEEEeCC--CCHH---Hhc--CcCCEE
Confidence 468999999988 9999999999999 89999987653322221111 1123322221 2211 222 148999
Q ss_pred EEccccc
Q 022280 81 VNCAALS 87 (300)
Q Consensus 81 ih~a~~~ 87 (300)
|..+|+.
T Consensus 73 V~s~gi~ 79 (447)
T PRK02472 73 VKNPGIP 79 (447)
T ss_pred EECCCCC
Confidence 9999865
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0028 Score=55.17 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=71.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEE-EeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFF-DVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++||.|+|+ |.+|+.++-.|+..|.- .++++.+++.+........+.+...+. ...+.. ++++. ++ +.|+||
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~-~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~-~~~~~-~~---~adivI 78 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQGIA-DELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA-GDYSD-CK---DADLVV 78 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCC-CEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe-CCHHH-hC---CCCEEE
Confidence 468999997 99999999999999832 378888887665443322221111100 111211 12232 33 899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
-+||...... ....+.+..|+.-.. .+++.+.+.+.. .++.+|
T Consensus 79 itag~~~k~g--~~R~dll~~N~~i~~-~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 79 ITAGAPQKPG--ETRLDLVEKNLKIFK-SIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EecCCCCCCC--CCHHHHHHHHHHHHH-HHHHHHHHhCCCeEEEEcc
Confidence 9999754321 234566778877663 778888876664 455555
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0022 Score=54.95 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|.| +|+.|++++..|+..|. -+|++..|+.++...+.+.+......... ...+++.+.+ ...|+||
T Consensus 126 ~~k~vlIlG-aGGaaraia~aL~~~G~--~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~---~~aDiVI 197 (284)
T PRK12549 126 SLERVVQLG-AGGAGAAVAHALLTLGV--ERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAAL---AAADGLV 197 (284)
T ss_pred cCCEEEEEC-CcHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhh---CCCCEEE
Confidence 357899999 67799999999999993 27999999877777666544221110111 1111222223 3799999
Q ss_pred Ecc
Q 022280 82 NCA 84 (300)
Q Consensus 82 h~a 84 (300)
++-
T Consensus 198 naT 200 (284)
T PRK12549 198 HAT 200 (284)
T ss_pred ECC
Confidence 993
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0039 Score=53.95 Aligned_cols=113 Identities=18% Similarity=0.081 Sum_probs=69.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh----hhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ----LLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|+|.|+|++|.+|+.++-.|+..+.- .++++.+.+ ... .+.+.. .... +.+ ....+++. +.+.+.|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~-~elvLiDi~--~a~g~alDL~~~~-~~~~-i~~-~~~~~~~y---~~~~daDi 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLV-SELALYDIV--NTPGVAADLSHIN-TPAK-VTG-YLGPEELK---KALKGADV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC-cEEEEEecC--ccceeehHhHhCC-Ccce-EEE-ecCCCchH---HhcCCCCE
Confidence 58999999999999999999888743 467777765 211 111111 0011 111 10111122 23348999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEeec
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLST 128 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS 128 (300)
||-+||....+ .....+.++.|..-.. .+++...+.+.. .++.+|-
T Consensus 72 vvitaG~~~k~--g~tR~dll~~N~~i~~-~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 72 VVIPAGVPRKP--GMTRDDLFNINAGIVR-DLATAVAKACPKALILIISN 118 (310)
T ss_pred EEEeCCCCCCC--CCCHHHHHHHHHHHHH-HHHHHHHHhCCCeEEEEccC
Confidence 99999975322 1245567888887764 888888877664 5555554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.002 Score=53.23 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=56.4
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+++|.| .|-+|+.+++.|.++| ++|++..++++........ ......+.+|-++++.++++- ....|+++-+
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g---~~Vv~Id~d~~~~~~~~~~-~~~~~~v~gd~t~~~~L~~ag--i~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEG---HNVVLIDRDEERVEEFLAD-ELDTHVVIGDATDEDVLEEAG--IDDADAVVAA 73 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCC---CceEEEEcCHHHHHHHhhh-hcceEEEEecCCCHHHHHhcC--CCcCCEEEEe
Confidence 6788888 8999999999999999 8899999987766553321 124556889999987766552 1278998876
Q ss_pred cc
Q 022280 84 AA 85 (300)
Q Consensus 84 a~ 85 (300)
-+
T Consensus 74 t~ 75 (225)
T COG0569 74 TG 75 (225)
T ss_pred eC
Confidence 44
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0023 Score=55.84 Aligned_cols=73 Identities=27% Similarity=0.338 Sum_probs=50.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+.+++|+||+|.+|..+++.+...| .+|+++.++++....+ ..+.. . ...|..+ +.+.+....++|.|++
T Consensus 163 ~~~vlI~ga~g~vG~~~~~~a~~~g---~~v~~~~~~~~~~~~~-~~~~~--~-~~~~~~~---~~~~~~~~~~~d~v~~ 232 (332)
T cd08259 163 GDTVLVTGAGGGVGIHAIQLAKALG---ARVIAVTRSPEKLKIL-KELGA--D-YVIDGSK---FSEDVKKLGGADVVIE 232 (332)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC---CeEEEEeCCHHHHHHH-HHcCC--c-EEEecHH---HHHHHHhccCCCEEEE
Confidence 5689999999999999999999999 8898888776544433 22221 1 1112222 3344444447999999
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+++
T Consensus 233 ~~g 235 (332)
T cd08259 233 LVG 235 (332)
T ss_pred CCC
Confidence 986
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0016 Score=52.69 Aligned_cols=69 Identities=20% Similarity=0.186 Sum_probs=48.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|.+|+|+|+|. |-+|+++++.|.+.| ++|++.+++++....+.+.++ .. ..| . +++... .+|++
T Consensus 26 l~gk~v~I~G~-G~vG~~~A~~L~~~G---~~Vvv~D~~~~~~~~~~~~~g--~~--~v~---~---~~l~~~--~~Dv~ 89 (200)
T cd01075 26 LEGKTVAVQGL-GKVGYKLAEHLLEEG---AKLIVADINEEAVARAAELFG--AT--VVA---P---EEIYSV--DADVF 89 (200)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHcC--CE--EEc---c---hhhccc--cCCEE
Confidence 35789999995 689999999999999 889988887655555444321 11 112 1 223321 79999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
+.+|.
T Consensus 90 vp~A~ 94 (200)
T cd01075 90 APCAL 94 (200)
T ss_pred Eeccc
Confidence 98875
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0035 Score=50.29 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=42.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
||++.|.| +|-||+.|++.|...| ++|++..|+.++ .....+.+...+. ..+.++..+ ..|+||
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag---~eV~igs~r~~~~~~a~a~~l~~~i~--------~~~~~dA~~---~aDVVv 65 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAG---HEVIIGSSRGPKALAAAAAALGPLIT--------GGSNEDAAA---LADVVV 65 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCC---CeEEEecCCChhHHHHHHHhhccccc--------cCChHHHHh---cCCEEE
Confidence 45666655 9999999999999999 888888666443 3333333323211 111233444 688888
Q ss_pred Ecc
Q 022280 82 NCA 84 (300)
Q Consensus 82 h~a 84 (300)
-..
T Consensus 66 LAV 68 (211)
T COG2085 66 LAV 68 (211)
T ss_pred Eec
Confidence 753
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0031 Score=46.90 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=28.0
Q ss_pred CeEEEEcCCccchHHHHHhhhh-ccCCCceeeecCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHHS 39 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~-~g~~~~~v~~~~r~ 39 (300)
|||.|.|++|-+|+.+++.+.+ .+ +++.+...+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~---~~lv~~v~~ 34 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG---FELVGAVDR 34 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT---EEEEEEEET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC---cEEEEEEec
Confidence 5899999999999999999999 56 776666544
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0033 Score=54.63 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=33.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ 44 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~ 44 (300)
+|+|.|+| +|.+|..++..|+++| ++|++.+++++...
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G---~~V~v~d~~~~~~~ 39 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAG---HEVRLWDADPAAAA 39 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCC---CeeEEEeCCHHHHH
Confidence 46899999 9999999999999999 89999999865444
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.01 Score=50.58 Aligned_cols=101 Identities=19% Similarity=0.139 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecC-CchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK-SGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~d~v 80 (300)
.++++.|+|+.| ||+--++...+-| ++|++.+++..+.++..+.++. + ...|.+ |++.++++.. ..|.+
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG---~rV~vis~~~~kkeea~~~LGA--d-~fv~~~~d~d~~~~~~~---~~dg~ 250 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMG---MRVTVISTSSKKKEEAIKSLGA--D-VFVDSTEDPDIMKAIMK---TTDGG 250 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhC---cEEEEEeCCchhHHHHHHhcCc--c-eeEEecCCHHHHHHHHH---hhcCc
Confidence 468999999988 9999999999999 8999999997666666665533 2 345566 7777777766 45666
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
+|++.... . .+ +..+++.++..| ++|+++=..
T Consensus 251 ~~~v~~~a-~----~~-----------~~~~~~~lk~~G--t~V~vg~p~ 282 (360)
T KOG0023|consen 251 IDTVSNLA-E----HA-----------LEPLLGLLKVNG--TLVLVGLPE 282 (360)
T ss_pred ceeeeecc-c----cc-----------hHHHHHHhhcCC--EEEEEeCcC
Confidence 66543210 0 00 125555555444 788887533
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0049 Score=54.22 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+|||+||+|.+|..+++.+...| .+|+++.+++++.+.+.+.++. . ...|..+.+++.+.+... +++|+|
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~G---~~Vi~~~~~~~~~~~~~~~lGa--~-~vi~~~~~~~~~~~i~~~~~~gvd~v 225 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLKG---CYVVGSAGSDEKVDLLKNKLGF--D-DAFNYKEEPDLDAALKRYFPNGIDIY 225 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHhcCC--c-eeEEcCCcccHHHHHHHhCCCCcEEE
Confidence 5789999999999999999999999 8899888886655544432322 1 122322222233222221 378999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|++.|
T Consensus 226 ~d~~g 230 (338)
T cd08295 226 FDNVG 230 (338)
T ss_pred EECCC
Confidence 99876
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0096 Score=49.32 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+.++|+|.| .|.+|+++++.|+..|- -++++.+..
T Consensus 20 ~~~~VlivG-~GglGs~va~~La~~Gv--g~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVG-AGGLGSPAAEYLAAAGV--GKLGLVDDD 54 (228)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCC--CEEEEEcCC
Confidence 467899999 88999999999999994 355555543
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0065 Score=52.23 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=68.9
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEE--EeecCCchhHHHHHHhcCCCCEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFF--DVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~--~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+||.|+|+ |.||+.++-.|+.++.- -++++.+...+.+......+.+...+. ...+....+ .+.+.+.|+|+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~-~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~----y~~~~~aDiVv 74 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLG-SELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGD----YEDLKGADIVV 74 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhccccc-ceEEEEEcccccccchhcchhhcchhccCceEEecCCC----hhhhcCCCEEE
Confidence 58999999 99999999999888752 378888887444332221111111111 111111111 12233899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEee
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLS 127 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~S 127 (300)
-.||...-+. ..-.+.+..|..-. ..+.+...+.+..-++.+-
T Consensus 75 itAG~prKpG--mtR~DLl~~Na~I~-~~i~~~i~~~~~d~ivlVv 117 (313)
T COG0039 75 ITAGVPRKPG--MTRLDLLEKNAKIV-KDIAKAIAKYAPDAIVLVV 117 (313)
T ss_pred EeCCCCCCCC--CCHHHHHHhhHHHH-HHHHHHHHhhCCCeEEEEe
Confidence 9998764332 23456678887666 3778887777665444443
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.011 Score=51.64 Aligned_cols=76 Identities=22% Similarity=0.108 Sum_probs=52.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+++|+|+++.+|..+++.+...| .+|+++.++.++...+. .... . ...|..+.+..+.+.+.. .++|.+
T Consensus 167 ~~~vlI~g~~~~iG~~~~~~~~~~g---~~v~~~~~~~~~~~~~~-~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~d~~ 239 (342)
T cd08266 167 GETVLVHGAGSGVGSAAIQIAKLFG---ATVIATAGSEDKLERAK-ELGA--D-YVIDYRKEDFVREVRELTGKRGVDVV 239 (342)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHH-HcCC--C-eEEecCChHHHHHHHHHhCCCCCcEE
Confidence 5689999999999999999999999 88988888765544332 2221 1 224555544444443322 268999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
+++++
T Consensus 240 i~~~g 244 (342)
T cd08266 240 VEHVG 244 (342)
T ss_pred EECCc
Confidence 99987
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=50.81 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=67.4
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh--hhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ--LLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
||.|+|++|.+|+.++-.|+.++.- .++++.+.++.... .+.+. ..... +.+ .++.+++. +.+.+.|+||-
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~-~elvL~Di~~a~g~a~DL~~~-~~~~~-i~~-~~~~~~~~---~~~~daDivvi 73 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV-SELSLYDIAGAAGVAADLSHI-PTAAS-VKG-FSGEEGLE---NALKGADVVVI 73 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC-cEEEEecCCCCcEEEchhhcC-CcCce-EEE-ecCCCchH---HHcCCCCEEEE
Confidence 5899999999999999999888742 46887777641100 01110 00011 111 00111122 23349999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEeec
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLST 128 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS 128 (300)
+||..... .....+.+..|..-.. .+.+...+.+.. .++.+|-
T Consensus 74 taG~~~~~--g~~R~dll~~N~~I~~-~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 74 PAGVPRKP--GMTRDDLFNVNAGIVK-DLVAAVAESCPKAMILVITN 117 (312)
T ss_pred eCCCCCCC--CccHHHHHHHhHHHHH-HHHHHHHHhCCCeEEEEecC
Confidence 99975432 1234566788877653 788888777665 4555553
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0061 Score=52.64 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+|.+|.|.||||++|..|++.|.++.+ .++.....+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~--~~l~~~~s~ 36 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSD--IELLSIPEA 36 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCC--eEEEEEecC
Confidence 467999999999999999999988874 666665544
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0056 Score=53.54 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeec
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT 36 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~ 36 (300)
++++|.|.||||++|+.|++.|.++.+...++..+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~l 37 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYAL 37 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEE
Confidence 46799999999999999999999976544565544
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.016 Score=43.69 Aligned_cols=105 Identities=15% Similarity=0.228 Sum_probs=59.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh-------------------h---hcCCC--ceeEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL-------------------L---DALPH--SFVFFD 58 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~-------------------~---~~~~~--~~~~~~ 58 (300)
.++|+|.| .|.+|+.+++.|+..|- -++++.+...=....+ . .++.+ .+..+.
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv--~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGV--GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP 78 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTT--SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCC--CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee
Confidence 46899999 88999999999999994 2566655541111100 0 11112 233333
Q ss_pred eecCCchhHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecccccc
Q 022280 59 VDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYE 133 (300)
Q Consensus 59 ~D~~~~~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~ 133 (300)
.++ +.+.....++ ++|+||.+... ... . ..+.+.|++.+. .+|+.++...+|
T Consensus 79 ~~~-~~~~~~~~~~---~~d~vi~~~d~---------~~~--------~-~~l~~~~~~~~~-p~i~~~~~g~~G 130 (135)
T PF00899_consen 79 EKI-DEENIEELLK---DYDIVIDCVDS---------LAA--------R-LLLNEICREYGI-PFIDAGVNGFYG 130 (135)
T ss_dssp SHC-SHHHHHHHHH---TSSEEEEESSS---------HHH--------H-HHHHHHHHHTT--EEEEEEEETTEE
T ss_pred ccc-cccccccccc---CCCEEEEecCC---------HHH--------H-HHHHHHHHHcCC-CEEEEEeecCEE
Confidence 344 2233455554 78988887431 111 1 255667777777 788888765554
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.013 Score=52.31 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+.++|+|.| .|.+|+.+++.|+..|- -++++++++
T Consensus 134 ~~~~VlvvG-~GG~Gs~ia~~La~~Gv--g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIG-AGGLGSPAALYLAAAGV--GTLGIVDHD 168 (376)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence 457899997 68899999999999994 257777765
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0032 Score=46.05 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=52.9
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEccc
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAA 85 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a~ 85 (300)
|+|.| .|-+|+.+++.|.+.+ ++|++..++++....+.+. .+.++.+|.++++.++++- ..+.+.|+-+..
T Consensus 1 vvI~G-~g~~~~~i~~~L~~~~---~~vvvid~d~~~~~~~~~~---~~~~i~gd~~~~~~l~~a~--i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKEGG---IDVVVIDRDPERVEELREE---GVEVIYGDATDPEVLERAG--IEKADAVVILTD 71 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHT---TSEEEES-TTSHHHHHHTT--GGCESEEEEESS
T ss_pred eEEEc-CCHHHHHHHHHHHhCC---CEEEEEECCcHHHHHHHhc---ccccccccchhhhHHhhcC--ccccCEEEEccC
Confidence 57778 5789999999999977 7899999987766666544 3677899999988766542 237888887643
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0072 Score=51.12 Aligned_cols=70 Identities=23% Similarity=0.431 Sum_probs=56.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
+||+++| +|=+|+.++-++..-| .+|++++|-...+.- +..+ . -+..|+.|.++++.+.++. +||+||--
T Consensus 13 ~kvmLLG-SGELGKEvaIe~QRLG---~eViAVDrY~~APAm---qVAh-r-s~Vi~MlD~~al~avv~re-kPd~IVpE 82 (394)
T COG0027 13 TKVMLLG-SGELGKEVAIEAQRLG---VEVIAVDRYANAPAM---QVAH-R-SYVIDMLDGDALRAVVERE-KPDYIVPE 82 (394)
T ss_pred eEEEEec-CCccchHHHHHHHhcC---CEEEEecCcCCChhh---hhhh-h-eeeeeccCHHHHHHHHHhh-CCCeeeeh
Confidence 5799999 9999999999999999 999999997544321 1111 1 2578999999999999988 99999874
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.017 Score=48.31 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+|++|||.|||+ =|+.|++.|.+.| +.|++..-..... .. ......+.+-+.+.+++.+.+.+. +++.||
T Consensus 1 ~~~~IlvlgGT~-egr~la~~L~~~g---~~v~~Svat~~g~---~~--~~~~~v~~G~l~~~~~l~~~l~~~-~i~~VI 70 (248)
T PRK08057 1 MMPRILLLGGTS-EARALARALAAAG---VDIVLSLAGRTGG---PA--DLPGPVRVGGFGGAEGLAAYLREE-GIDLVI 70 (248)
T ss_pred CCceEEEEechH-HHHHHHHHHHhCC---CeEEEEEccCCCC---cc--cCCceEEECCCCCHHHHHHHHHHC-CCCEEE
Confidence 467899999986 6899999999999 6666655543222 11 123444566676888888888776 999999
Q ss_pred Ecc
Q 022280 82 NCA 84 (300)
Q Consensus 82 h~a 84 (300)
+..
T Consensus 71 DAT 73 (248)
T PRK08057 71 DAT 73 (248)
T ss_pred ECC
Confidence 963
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0071 Score=52.84 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=51.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+|||+||+|.+|..+++.+...| .+|+++.+++++...+ ..++. . ...|..+.+.+.+..... +++|+|
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G---~~Vi~~~~s~~~~~~~-~~lGa--~-~vi~~~~~~~~~~~~~~~~~~gvdvv 211 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKG---CKVVGAAGSDEKVAYL-KKLGF--D-VAFNYKTVKSLEETLKKASPDGYDCY 211 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHH-HHcCC--C-EEEeccccccHHHHHHHhCCCCeEEE
Confidence 5789999999999999999999999 8899888876655444 33332 2 223333332333333322 268999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|++.|
T Consensus 212 ~d~~G 216 (325)
T TIGR02825 212 FDNVG 216 (325)
T ss_pred EECCC
Confidence 99876
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.022 Score=47.20 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
...+|+|.| .|.+|+++++.|+..|- -++++++..
T Consensus 26 ~~~~VlIiG-~GGlGs~ia~~La~~Gv--g~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVG-VGGLGSPVAYYLAAAGV--GRILLIDEQ 60 (231)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCC--CEEEEEcCC
Confidence 457899999 88999999999999995 356666654
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0084 Score=50.82 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=68.1
Q ss_pred EEEEcCCccchHHHHHhhhhcc--CCCceeeecCCCCCchhhhhhcCCCceeEE-EeecCCchhHHHHHHhcCCCCEEEE
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIE--GKPYDVAATHHSTPLPQLLLDALPHSFVFF-DVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g--~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
|.|+||+|.+|..++..|+..| .. .++++.+.+++.+......+.+-.... ...++-.+++.+.++ +.|+||.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~-~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~---~aDiVv~ 76 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLA-IELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFK---DADVVII 76 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcc-eEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhC---CCCEEEE
Confidence 5799999999999999999887 32 578888887655443322221111100 112221222333444 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
+++...... .........|+.-.. .+++.+.+.... .++.+|
T Consensus 77 t~~~~~~~g--~~r~~~~~~n~~i~~-~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 77 TAGVGRKPG--MGRLDLLKRNVPIVK-EIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CCCCCCCcC--CCHHHHHHHHHHHHH-HHHHHHHHHCCCeEEEEec
Confidence 998654321 123345566666553 778887776554 444444
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0071 Score=52.13 Aligned_cols=25 Identities=48% Similarity=0.574 Sum_probs=23.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhcc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIE 27 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g 27 (300)
+++|.|.||||-+|+.+++.|.++.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~ 25 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH 25 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC
Confidence 5789999999999999999999975
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0052 Score=54.10 Aligned_cols=75 Identities=19% Similarity=0.114 Sum_probs=50.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
.+|||+||+|.+|..+++.+...| . +|+++.+++++...+.+.++. . ...|..+.+ +.+.+... +++|+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G---~~~Vi~~~~s~~~~~~~~~~lGa--~-~vi~~~~~~-~~~~i~~~~~~gvd~v 228 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLG---CSRVVGICGSDEKCQLLKSELGF--D-AAINYKTDN-VAERLRELCPEGVDVY 228 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CCEEEEEcCCHHHHHHHHHhcCC--c-EEEECCCCC-HHHHHHHHCCCCceEE
Confidence 789999999999999999999999 7 799888876655544443432 2 122333322 22222211 369999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|++.+
T Consensus 229 id~~g 233 (345)
T cd08293 229 FDNVG 233 (345)
T ss_pred EECCC
Confidence 99876
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0056 Score=56.43 Aligned_cols=70 Identities=16% Similarity=0.295 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++++|+|+ |.+|++++..|.+.| ++|++..|+.++...+.+..+.. ..++.+ +. .+..+|+||
T Consensus 331 ~~k~vlIiGa-GgiG~aia~~L~~~G---~~V~i~~R~~~~~~~la~~~~~~----~~~~~~---~~----~l~~~DiVI 395 (477)
T PRK09310 331 NNQHVAIVGA-GGAAKAIATTLARAG---AELLIFNRTKAHAEALASRCQGK----AFPLES---LP----ELHRIDIII 395 (477)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhccc----eechhH---hc----ccCCCCEEE
Confidence 4689999994 899999999999999 88888888766555554432211 111111 11 123799999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
+|...
T Consensus 396 natP~ 400 (477)
T PRK09310 396 NCLPP 400 (477)
T ss_pred EcCCC
Confidence 99654
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=53.99 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=52.1
Q ss_pred CCCCeEEEEcC----------------CccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCc
Q 022280 1 MSKKRVLVVGG----------------TGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64 (300)
Q Consensus 1 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (300)
|.+++||||+| ||-.|.+|++++..+| .+|++..-+.. . ..+..+.++. +...
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~G---A~VtlI~Gp~~-~-----~~p~~v~~i~--V~ta 322 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAG---AEVTLISGPVD-L-----ADPQGVKVIH--VESA 322 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCC---CcEEEEeCCcC-C-----CCCCCceEEE--ecCH
Confidence 46789999965 6899999999999999 67766543211 1 1234454343 4444
Q ss_pred hhHHHHH-HhcCCCCEEEEcccccCcc
Q 022280 65 SGFDAVA-LKFGQPDVVVNCAALSVPR 90 (300)
Q Consensus 65 ~~~~~~~-~~~~~~d~vih~a~~~~~~ 90 (300)
+++.+.+ +.+ ..|++|++|++.++.
T Consensus 323 ~eM~~av~~~~-~~Di~I~aAAVaDyr 348 (475)
T PRK13982 323 RQMLAAVEAAL-PADIAIFAAAVADWR 348 (475)
T ss_pred HHHHHHHHhhC-CCCEEEEecccccee
Confidence 4444444 334 589999999988764
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.003 Score=52.01 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=35.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL 47 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~ 47 (300)
|+|.|+||+|.+|+.+++.|++.| ++|++..|+++....+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~r~~~~~~~l~ 41 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGSRDLEKAEEAA 41 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEEcCHHHHHHHH
Confidence 589999999999999999999999 78888888876655443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0056 Score=52.51 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++++|+|. |.+|+.+++.|...| .+|++..|+++....... . ... . ...+++.+.++ +.|+||
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~G---~~V~v~~R~~~~~~~~~~-~--g~~--~---~~~~~l~~~l~---~aDiVi 214 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSALG---ARVFVGARSSADLARITE-M--GLI--P---FPLNKLEEKVA---EIDIVI 214 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH-C--CCe--e---ecHHHHHHHhc---cCCEEE
Confidence 4689999995 889999999999999 889999988654333221 1 111 1 11222344444 899999
Q ss_pred Ecc
Q 022280 82 NCA 84 (300)
Q Consensus 82 h~a 84 (300)
++.
T Consensus 215 nt~ 217 (287)
T TIGR02853 215 NTI 217 (287)
T ss_pred ECC
Confidence 975
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.011 Score=53.28 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEe--ecCCc----hhHHHHHHhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV--DLKSG----SGFDAVALKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~--D~~~~----~~~~~~~~~~~ 75 (300)
++|+|||||++..+|..+++.|.+.| ++|++++..+.......... .. ++.. .-.+. +.+.++.++.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G---~~Vi~~d~~~~~~~~~s~~~-d~--~~~~p~p~~d~~~~~~~L~~i~~~~- 75 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAG---HTVILADSLKYPLSRFSRAV-DG--FYTIPSPRWDPDAYIQALLSIVQRE- 75 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCchHHHHHHHhh-hh--eEEeCCCCCCHHHHHHHHHHHHHHc-
Confidence 46899999999999999999999999 89999887754332211111 11 1222 11222 2344555555
Q ss_pred CCCEEEEccc
Q 022280 76 QPDVVVNCAA 85 (300)
Q Consensus 76 ~~d~vih~a~ 85 (300)
++|+||-+..
T Consensus 76 ~id~vIP~~e 85 (389)
T PRK06849 76 NIDLLIPTCE 85 (389)
T ss_pred CCCEEEECCh
Confidence 7999998765
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.014 Score=50.67 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=66.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCcee--EEEeecCCchhHHHHHHhcCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFV--FFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
||||.|+|+ |.+|+.++..++..| . +|++.+++++........+.+... .....++...+++. ++ +.|+
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~---~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~---~aDi 73 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKE---LGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IA---GSDV 73 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HC---CCCE
Confidence 579999997 999999999999988 5 899999876554322211101000 00111111112322 33 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
||.+++..... ...-.+.+.-|+.-.. .+++.+.+...+ .+|.+|
T Consensus 74 Vii~~~~p~~~--~~~r~~~~~~n~~i~~-~i~~~i~~~~~~~~viv~t 119 (307)
T PRK06223 74 VVITAGVPRKP--GMSRDDLLGINAKIMK-DVAEGIKKYAPDAIVIVVT 119 (307)
T ss_pred EEECCCCCCCc--CCCHHHHHHHHHHHHH-HHHHHHHHHCCCeEEEEec
Confidence 99998864321 1123344555655443 677777665544 455555
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.025 Score=45.77 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+.++|+|.|++| +|.++++.|+..|- -++++.+..
T Consensus 18 ~~s~VlviG~gg-lGsevak~L~~~GV--g~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGA-LGAEIAKNLVLAGI--DSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEECC
Confidence 457899999666 99999999999994 235555554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.006 Score=53.16 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=59.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCch-hHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS-GFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~d~v 80 (300)
++++||+.| +||+.+..+..|.++++ .+|++..|.....+++.+.. ++..+..|+.+.+ .++...+ ..|.|
T Consensus 1 ~~~~vlllg-sg~v~~p~~d~ls~~~d--v~vtva~~~~~~~~~~~~~~--~~~av~ldv~~~~~~L~~~v~---~~D~v 72 (445)
T KOG0172|consen 1 TKKGVLLLG-SGFVSRPVADFLSRKKD--VNVTVASRTLKDAEALVKGI--NIKAVSLDVADEELALRKEVK---PLDLV 72 (445)
T ss_pred CCcceEEec-CccccchHHHHHhhcCC--ceEEEehhhHHHHHHHhcCC--CccceEEEccchHHHHHhhhc---cccee
Confidence 367899999 99999999999999887 78999988877777666543 3666899999987 6666665 67888
Q ss_pred EEcc
Q 022280 81 VNCA 84 (300)
Q Consensus 81 ih~a 84 (300)
+-+-
T Consensus 73 iSLl 76 (445)
T KOG0172|consen 73 ISLL 76 (445)
T ss_pred eeec
Confidence 7764
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0068 Score=54.69 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|.| +|.+|+.+++.|.+.|. -++++..|+.++...+.+.++. .. ....+++... +...|+||
T Consensus 180 ~~kkvlviG-aG~~a~~va~~L~~~g~--~~I~V~nRt~~ra~~La~~~~~-~~-----~~~~~~l~~~---l~~aDiVI 247 (414)
T PRK13940 180 SSKNVLIIG-AGQTGELLFRHVTALAP--KQIMLANRTIEKAQKITSAFRN-AS-----AHYLSELPQL---IKKADIII 247 (414)
T ss_pred cCCEEEEEc-CcHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHhcC-Ce-----EecHHHHHHH---hccCCEEE
Confidence 468999999 59999999999999994 3688899987777777666432 11 1122223333 34899999
Q ss_pred Eccccc
Q 022280 82 NCAALS 87 (300)
Q Consensus 82 h~a~~~ 87 (300)
++-+..
T Consensus 248 ~aT~a~ 253 (414)
T PRK13940 248 AAVNVL 253 (414)
T ss_pred ECcCCC
Confidence 997643
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0055 Score=53.28 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|.|+ |-+|+.+++.|...|. .+|++..|++++...+...++. . ..+.+++.+.+. ..|+||
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~--~~V~v~~r~~~ra~~la~~~g~--~-----~~~~~~~~~~l~---~aDvVi 243 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGV--AEITIANRTYERAEELAKELGG--N-----AVPLDELLELLN---EADVVI 243 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHcCC--e-----EEeHHHHHHHHh---cCCEEE
Confidence 4689999995 9999999999998764 5788889887776666666543 1 122233444444 789999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.+.+.
T Consensus 244 ~at~~ 248 (311)
T cd05213 244 SATGA 248 (311)
T ss_pred ECCCC
Confidence 98763
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.012 Score=51.34 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=67.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCC----CceeeecCCCCCc--hhhhhhcCCCce-eEE-EeecCCchhHHHHHHh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGK----PYDVAATHHSTPL--PQLLLDALPHSF-VFF-DVDLKSGSGFDAVALK 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~----~~~v~~~~r~~~~--~~~~~~~~~~~~-~~~-~~D~~~~~~~~~~~~~ 73 (300)
+++||.|+|++|.+|+.++-.|+..|.- ..++++.+.++.. .......+.+.. .+. ...++. + ..+.
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~----~y~~ 77 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITD-D----PNVA 77 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEec-C----hHHH
Confidence 4579999999999999999999887731 0167877775321 111110000000 000 001111 1 1233
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CC-eEEEee
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-EN-LLIHLS 127 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~-~~v~~S 127 (300)
+.+.|+||-+||..... .....+.+..|+.-. .++.+...+.. .. .++.+|
T Consensus 78 ~~daDiVVitaG~~~k~--g~tR~dll~~Na~i~-~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 78 FKDADVALLVGARPRGP--GMERKDLLEANGAIF-TAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred hCCCCEEEEeCCCCCCC--CCcHHHHHHHHHHHH-HHHHHHHHHhCCCCeEEEEeC
Confidence 34899999999965322 224556778887766 37888887743 33 555555
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.027 Score=47.18 Aligned_cols=35 Identities=31% Similarity=0.230 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
..++|+|.|+ |.+|+.+++.|+..|- -++++++..
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gv--g~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGV--GTLTLVDFD 65 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCC
Confidence 4678999996 9999999999999994 255555554
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0065 Score=53.56 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=27.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
++|.|+|+||++|++|++.|.++.. .++..+..+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~--~~l~~v~~~ 34 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPY--FELAKVVAS 34 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--ceEEEEEEC
Confidence 5899999999999999998888653 577766443
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.021 Score=49.80 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeE--EEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVF--FDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
..++|.|+|| |.+|+.++..|+..|. .++++.+.+++......-.+...... ....+....+++ .++ +.|+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~--~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~---~ADi 76 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL--GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIK---DSDV 76 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC--CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhC---CCCE
Confidence 4579999996 9999999999988884 47888888765432211101000000 001111112234 334 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCe-EEEeec
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL-LIHLST 128 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~-~v~~SS 128 (300)
||.+++...... ....+.+..|..-. ..+++.+.+...+. ++.+|-
T Consensus 77 VVitag~~~~~g--~~r~dll~~n~~i~-~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 77 VVITAGVQRKEE--MTREDLLTINGKIM-KSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred EEECCCCCCCCC--CCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecC
Confidence 999998654321 13345666776544 37888887766554 666653
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.015 Score=50.51 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=69.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEE-eecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD-VDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+||.|+|+ |.+|+.++-.|+..|.- .++++.+.+.+........+.+...+.. ..+....+++. ++ +.|+||
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~-~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~---~adivv 76 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLA-DELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TA---NSKVVI 76 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCC-CEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hC---CCCEEE
Confidence 468999995 99999999999888753 5788888776543322211111110000 01111112332 33 899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
-+||..... ...-.+.+..|+.-. ..+.+.+.+.+.+ .++.+|
T Consensus 77 itaG~~~k~--g~~R~dll~~N~~i~-~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 77 VTAGARQNE--GESRLDLVQRNVDIF-KGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred ECCCCCCCC--CCCHHHHHHHHHHHH-HHHHHHHHHhCCCcEEEEcc
Confidence 999975432 123456677787665 3788888887654 455555
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0032 Score=49.27 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=46.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
||+|.+.| .|-+|+.+++.|+++| ++|++.+|++++.+.+.+. .+. . .++..++.+ ..|+||-
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g---~~v~~~d~~~~~~~~~~~~---g~~--~-----~~s~~e~~~---~~dvvi~ 63 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAG---YEVTVYDRSPEKAEALAEA---GAE--V-----ADSPAEAAE---QADVVIL 63 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTT---TEEEEEESSHHHHHHHHHT---TEE--E-----ESSHHHHHH---HBSEEEE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcC---CeEEeeccchhhhhhhHHh---hhh--h-----hhhhhhHhh---cccceEe
Confidence 68999999 7999999999999999 8999999987777666544 111 1 123455666 6799988
Q ss_pred cc
Q 022280 83 CA 84 (300)
Q Consensus 83 ~a 84 (300)
|-
T Consensus 64 ~v 65 (163)
T PF03446_consen 64 CV 65 (163)
T ss_dssp -S
T ss_pred ec
Confidence 74
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.032 Score=46.56 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
...+|+|.| .|.+|+.+++.|+..|- -++++.+.+
T Consensus 23 ~~~~VlvvG-~GglGs~va~~La~~Gv--g~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVG-LGGLGCAASQYLAAAGV--GNLTLLDFD 57 (240)
T ss_pred hCCcEEEEC-cCHHHHHHHHHHHHcCC--CEEEEEeCC
Confidence 356899999 88999999999999994 356655654
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0084 Score=54.67 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=46.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|.|+||+|.+|..+++.|.+.| ++|++.+|+++.........+ +. .. .+..+..+ ..|+||-+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~r~~~~~~~~a~~~g--v~-----~~--~~~~e~~~---~aDvVIla 65 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTGRDPKKGKEVAKELG--VE-----YA--NDNIDAAK---DADIVIIS 65 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEECChHHHHHHHHHcC--Ce-----ec--cCHHHHhc---cCCEEEEe
Confidence 589999999999999999999999 889999988655433333321 11 11 11233333 78888887
Q ss_pred cc
Q 022280 84 AA 85 (300)
Q Consensus 84 a~ 85 (300)
..
T Consensus 66 vp 67 (437)
T PRK08655 66 VP 67 (437)
T ss_pred cC
Confidence 54
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.039 Score=41.97 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=26.0
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+|+|.| .|.+|+++++.|+..|. -++++.+..
T Consensus 1 ~VliiG-~GglGs~ia~~L~~~Gv--~~i~ivD~d 32 (143)
T cd01483 1 RVLLVG-LGGLGSEIALNLARSGV--GKITLIDFD 32 (143)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCC--CEEEEEcCC
Confidence 589999 59999999999999994 256666654
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.015 Score=51.45 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=50.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+|||+||+|.+|..+++.+...| .+|+++.+++++...+...++. . ...|..+.+++.+.+... +++|+|
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G---~~Vi~~~~~~~k~~~~~~~lGa--~-~vi~~~~~~~~~~~i~~~~~~gvD~v 232 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHG---CYVVGSAGSSQKVDLLKNKLGF--D-EAFNYKEEPDLDAALKRYFPEGIDIY 232 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHHhcCC--C-EEEECCCcccHHHHHHHHCCCCcEEE
Confidence 5789999999999999999999999 8898888776554444323332 1 122333222233322221 268999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|.+.|
T Consensus 233 ~d~vG 237 (348)
T PLN03154 233 FDNVG 237 (348)
T ss_pred EECCC
Confidence 99876
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.012 Score=53.20 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=70.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhc-------cCCCceeeecCCCCCchhhhhhcCCCce-eEE-EeecCCchhHHHHHHhc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEI-------EGKPYDVAATHHSTPLPQLLLDALPHSF-VFF-DVDLKSGSGFDAVALKF 74 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~-------g~~~~~v~~~~r~~~~~~~~~~~~~~~~-~~~-~~D~~~~~~~~~~~~~~ 74 (300)
-+|.|+|++|.+|.+++-.|+.. +.- .+++..+++.+.+......+.+.. .+. ...+.. ++. +.+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~-~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~-~~y----e~~ 174 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIA-LKLLGSERSKQALEGVAMELEDSLYPLLREVSIGI-DPY----EVF 174 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcc-cEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEec-CCH----HHh
Confidence 37999999999999999999988 521 378888887665543322221111 000 011111 111 223
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhh-ccCC-eEEEee
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE-NKEN-LLIHLS 127 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~-~~~~-~~v~~S 127 (300)
.+.|+||-.||..... ...-.+.++.|+.-. ..+.+...+ ++.. .+|.+|
T Consensus 175 kdaDiVVitAG~prkp--G~tR~dLl~~N~~I~-k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 175 QDAEWALLIGAKPRGP--GMERADLLDINGQIF-AEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred CcCCEEEECCCCCCCC--CCCHHHHHHHHHHHH-HHHHHHHHHhcCCCeEEEEcC
Confidence 3899999999975432 124456778887766 378888877 4654 555555
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.031 Score=45.17 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+.++|+|.|++| +|.++++.|+..|- -++++.+..
T Consensus 20 ~~s~VlIiG~gg-lG~evak~La~~GV--g~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKG-LGAEIAKNLVLSGI--GSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCH-HHHHHHHHHHHcCC--CEEEEEECC
Confidence 457899999555 99999999999994 245555544
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.019 Score=50.13 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=68.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh-hhhcC------CCceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL-LLDAL------PHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~-~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
++||.|+| +|.+|+.++..++..|. .++++.+.+++.... ..+.. +.... +.. .+| ++ .++
T Consensus 6 ~~KI~IIG-aG~vG~~ia~~la~~gl--~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~-I~~-~~d---~~-~l~--- 73 (321)
T PTZ00082 6 RRKISLIG-SGNIGGVMAYLIVLKNL--GDVVLFDIVKNIPQGKALDISHSNVIAGSNSK-VIG-TNN---YE-DIA--- 73 (321)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC--CeEEEEeCCCchhhHHHHHHHhhhhccCCCeE-EEE-CCC---HH-HhC---
Confidence 46899999 69999999999999984 378888887664321 11110 11111 221 022 32 233
Q ss_pred CCCEEEEcccccCcccc---ccChhhhhhcccccchHHHHHhhhhccCC-eEEEeec
Q 022280 76 QPDVVVNCAALSVPRVC---ENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLST 128 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~---~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS 128 (300)
+.|+||.+++....... +....+.+..|+.-. ..+++.+.+...+ .++.+|-
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~-~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIM-DEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecC
Confidence 89999999987542211 002345566676554 3788888776665 5666663
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.016 Score=50.02 Aligned_cols=76 Identities=22% Similarity=0.161 Sum_probs=52.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+++++|+|++|.+|..+++.+...| .+|+++.++++..+.+. .++ +. ...|..+.+..+.+.+.. .++|.|
T Consensus 145 g~~vlI~g~~~~~g~~~~~~a~~~g---~~v~~~~~~~~~~~~~~-~~g--~~-~~~~~~~~~~~~~~~~~~~~~~~d~v 217 (325)
T cd08253 145 GETVLVHGGSGAVGHAAVQLARWAG---ARVIATASSAEGAELVR-QAG--AD-AVFNYRAEDLADRILAATAGQGVDVI 217 (325)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHH-HcC--CC-EEEeCCCcCHHHHHHHHcCCCceEEE
Confidence 5789999999999999999999999 88999988765544442 222 22 234555544444433321 269999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
+++++
T Consensus 218 i~~~~ 222 (325)
T cd08253 218 IEVLA 222 (325)
T ss_pred EECCc
Confidence 99876
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.016 Score=52.15 Aligned_cols=72 Identities=24% Similarity=0.394 Sum_probs=53.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
.|+|+|+| +|.+|..+++.+.+.| ++|++.+.++....... .+ .++..|..|.+.+.++.++. ++|.|+-
T Consensus 12 ~~~ilIiG-~g~~~~~~~~a~~~~G---~~v~~~~~~~~~~~~~~---ad--~~~~~~~~d~~~l~~~~~~~-~id~vi~ 81 (395)
T PRK09288 12 ATRVMLLG-SGELGKEVAIEAQRLG---VEVIAVDRYANAPAMQV---AH--RSHVIDMLDGDALRAVIERE-KPDYIVP 81 (395)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEeCCCCCchHHh---hh--heEECCCCCHHHHHHHHHHh-CCCEEEE
Confidence 46899998 5789999999999999 89998887754322111 11 13567888888887777765 8999986
Q ss_pred cc
Q 022280 83 CA 84 (300)
Q Consensus 83 ~a 84 (300)
..
T Consensus 82 ~~ 83 (395)
T PRK09288 82 EI 83 (395)
T ss_pred ee
Confidence 53
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.017 Score=50.33 Aligned_cols=76 Identities=18% Similarity=0.045 Sum_probs=51.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~vi 81 (300)
+.++||+||+|.+|..+++.+...| .+|+++.+++++.+.+.+ ++. . ...|..+.+..+.+.+.. +++|+|+
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G---~~vi~~~~s~~~~~~l~~-~Ga--~-~vi~~~~~~~~~~v~~~~~~gvd~vl 216 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKG---CKVIGCAGSDDKVAWLKE-LGF--D-AVFNYKTVSLEEALKEAAPDGIDCYF 216 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHH-cCC--C-EEEeCCCccHHHHHHHHCCCCcEEEE
Confidence 5789999999999999999999999 889988887665554433 332 2 223433333222222211 3689999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
++.|
T Consensus 217 d~~g 220 (329)
T cd08294 217 DNVG 220 (329)
T ss_pred ECCC
Confidence 9876
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.015 Score=51.88 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=50.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
||+|+|.|| |.+|+.+++.+.+.| ++|++++.+++..... +.+ .++.+|..|.+.+.++.+ .+|+|.
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG---~~v~~~d~~~~~pa~~---~ad--~~~~~~~~D~~~l~~~a~---~~dvit 68 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLG---YKVIVLDPDPDSPAAQ---VAD--EVIVADYDDVAALRELAE---QCDVIT 68 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CEEEEEeCCCCCchhH---hCc--eEEecCCCCHHHHHHHHh---cCCEEE
Confidence 578999995 799999999999999 9999998765432211 111 235678888888888777 788764
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0084 Score=51.36 Aligned_cols=77 Identities=21% Similarity=0.176 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++++|.| +|..|++++..|++.|. -+|++..|+.++...+.+.++....... +...+++... ....|+||
T Consensus 124 ~~k~vlvlG-aGGaarai~~aL~~~G~--~~i~I~nRt~~ka~~La~~~~~~~~~~~--~~~~~~~~~~---~~~~DiVI 195 (282)
T TIGR01809 124 AGFRGLVIG-AGGTSRAAVYALASLGV--TDITVINRNPDKLSRLVDLGVQVGVITR--LEGDSGGLAI---EKAAEVLV 195 (282)
T ss_pred CCceEEEEc-CcHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhhhcCccee--ccchhhhhhc---ccCCCEEE
Confidence 357899998 69999999999999994 3688899998777777665432211111 1111112222 23799999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
|+-..
T Consensus 196 naTp~ 200 (282)
T TIGR01809 196 STVPA 200 (282)
T ss_pred ECCCC
Confidence 98654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.019 Score=48.79 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=45.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhc--cCCCceeee-cCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEI--EGKPYDVAA-THHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~--g~~~~~v~~-~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
|++++|.|.| .|.||+.+++.|.+. + +++.+ .+|++++...+.+.++.. .-.++++++++ .+
T Consensus 4 m~~irIGIIG-~G~IG~~~a~~L~~~~~~---~el~aV~dr~~~~a~~~a~~~g~~--------~~~~~~eell~---~~ 68 (271)
T PRK13302 4 RPELRVAIAG-LGAIGKAIAQALDRGLPG---LTLSAVAVRDPQRHADFIWGLRRP--------PPVVPLDQLAT---HA 68 (271)
T ss_pred CCeeEEEEEC-ccHHHHHHHHHHHhcCCC---eEEEEEECCCHHHHHHHHHhcCCC--------cccCCHHHHhc---CC
Confidence 4567899999 899999999999874 5 77764 455544444443332210 01123455554 78
Q ss_pred CEEEEcccc
Q 022280 78 DVVVNCAAL 86 (300)
Q Consensus 78 d~vih~a~~ 86 (300)
|+|+-|+..
T Consensus 69 D~Vvi~tp~ 77 (271)
T PRK13302 69 DIVVEAAPA 77 (271)
T ss_pred CEEEECCCc
Confidence 999999763
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.014 Score=52.03 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=52.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
..+|+|+|+ |-+|...++.|...| .+|++.+|++++...+...++.. +..+..+.+.+.+.+. ..|+||+
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~lG---a~V~v~d~~~~~~~~l~~~~g~~---v~~~~~~~~~l~~~l~---~aDvVI~ 236 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANGLG---ATVTILDINIDRLRQLDAEFGGR---IHTRYSNAYEIEDAVK---RADLLIG 236 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcCce---eEeccCCHHHHHHHHc---cCCEEEE
Confidence 357999985 899999999999999 78999998866555444433221 2234445555555544 8999999
Q ss_pred cccc
Q 022280 83 CAAL 86 (300)
Q Consensus 83 ~a~~ 86 (300)
+++.
T Consensus 237 a~~~ 240 (370)
T TIGR00518 237 AVLI 240 (370)
T ss_pred cccc
Confidence 8754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.01 Score=50.79 Aligned_cols=79 Identities=22% Similarity=0.197 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++++|.| +|+.|++++-.|++.|. -++++..|+.++...+.+.+............+..++..... .+|.||
T Consensus 126 ~~k~vlilG-aGGaarAi~~aL~~~g~--~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~---~~divI 199 (283)
T PRK14027 126 KLDSVVQVG-AGGVGNAVAYALVTHGV--QKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIA---AADGVV 199 (283)
T ss_pred CCCeEEEEC-CcHHHHHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHh---hcCEEE
Confidence 357899999 59999999999999994 368888998777777665432111000001112112222233 789999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
|+-..
T Consensus 200 NaTp~ 204 (283)
T PRK14027 200 NATPM 204 (283)
T ss_pred EcCCC
Confidence 98543
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.017 Score=45.30 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
.+++|+|+|+++.+|..+++.|.++| .+|++..|+
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC---CEEEEEECC
Confidence 57899999987788999999999999 778777765
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0083 Score=54.54 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|.| +|-+|+.+++.|...|. -+|++..|++++...+...++. +..+.+++...+. +.|+||
T Consensus 181 ~~~~vlViG-aG~iG~~~a~~L~~~G~--~~V~v~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~---~aDvVI 247 (423)
T PRK00045 181 SGKKVLVIG-AGEMGELVAKHLAEKGV--RKITVANRTLERAEELAEEFGG-------EAIPLDELPEALA---EADIVI 247 (423)
T ss_pred cCCEEEEEC-chHHHHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHHHcCC-------cEeeHHHHHHHhc---cCCEEE
Confidence 467999998 59999999999999983 2788889887666666655432 1112233333333 899999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.+.+.
T Consensus 248 ~aT~s 252 (423)
T PRK00045 248 SSTGA 252 (423)
T ss_pred ECCCC
Confidence 98653
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0094 Score=47.33 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|.|.| .|-||+++++.|..-| .+|++.+|+.......... . + ...+++++++ +.|+|+
T Consensus 35 ~g~tvgIiG-~G~IG~~vA~~l~~fG---~~V~~~d~~~~~~~~~~~~---~---~-----~~~~l~ell~---~aDiv~ 96 (178)
T PF02826_consen 35 RGKTVGIIG-YGRIGRAVARRLKAFG---MRVIGYDRSPKPEEGADEF---G---V-----EYVSLDELLA---QADIVS 96 (178)
T ss_dssp TTSEEEEES-TSHHHHHHHHHHHHTT----EEEEEESSCHHHHHHHHT---T---E-----EESSHHHHHH---H-SEEE
T ss_pred CCCEEEEEE-EcCCcCeEeeeeecCC---ceeEEecccCChhhhcccc---c---c-----eeeehhhhcc---hhhhhh
Confidence 578999999 8999999999999999 8999999986543311110 0 1 1224667777 789998
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.+...
T Consensus 97 ~~~pl 101 (178)
T PF02826_consen 97 LHLPL 101 (178)
T ss_dssp E-SSS
T ss_pred hhhcc
Confidence 87654
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.041 Score=44.96 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
...+|+|.| .|.+|+.+++.|+..|- -++++.+.+
T Consensus 27 ~~~~V~ViG-~GglGs~ia~~La~~Gv--g~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAG-AGGLGSNIAVALARSGV--GNLKLVDFD 61 (212)
T ss_pred hCCCEEEEC-cCHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence 457899999 79999999999999994 347666665
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.028 Score=49.54 Aligned_cols=115 Identities=15% Similarity=0.171 Sum_probs=68.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEE-EeecCCchhHHHHHHhcCCCCEEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFF-DVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+||.|+|+ |.+|+.++-.|+..+.- .++++.+.+++........+.+...+. ...+....+++. + .+.|+||-
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~-~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~---~daDiVVi 111 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLA-DELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-T---AGSDLCIV 111 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCC-CEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-h---CCCCEEEE
Confidence 69999995 99999999999988753 468888877654432221111111000 012221111222 3 38999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
+||...... ..-.+.+..|+.-. ..+++.+.+.+.+ .++.+|
T Consensus 112 tAG~~~k~g--~tR~dll~~N~~I~-~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 112 TAGARQIPG--ESRLNLLQRNVALF-RKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCCCCCCcC--CCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEec
Confidence 999753321 23445677776655 3777777776654 455555
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.037 Score=49.08 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+..+|+|.| .|.+|+.+++.|+..|- -++++.+..
T Consensus 27 ~~~~VlivG-~GGlGs~~a~~La~~Gv--g~i~lvD~D 61 (355)
T PRK05597 27 FDAKVAVIG-AGGLGSPALLYLAGAGV--GHITIIDDD 61 (355)
T ss_pred hCCeEEEEC-CCHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence 457899999 68999999999999994 345555554
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.013 Score=54.29 Aligned_cols=74 Identities=24% Similarity=0.332 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|.|+ |-+|+.+++.|+..|. -+|++..|+.++...+...++. .... ....+++...+. ..|+||
T Consensus 265 ~~kkVlVIGA-G~mG~~~a~~L~~~G~--~~V~V~nRs~era~~La~~~~g-~~i~---~~~~~dl~~al~---~aDVVI 334 (519)
T PLN00203 265 ASARVLVIGA-GKMGKLLVKHLVSKGC--TKMVVVNRSEERVAALREEFPD-VEII---YKPLDEMLACAA---EADVVF 334 (519)
T ss_pred CCCEEEEEeC-HHHHHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHhCC-CceE---eecHhhHHHHHh---cCCEEE
Confidence 3689999996 9999999999999993 2689999998777777665432 1111 112222333443 899999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+-+
T Consensus 335 sAT~ 338 (519)
T PLN00203 335 TSTS 338 (519)
T ss_pred EccC
Confidence 8754
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.012 Score=53.20 Aligned_cols=117 Identities=11% Similarity=0.075 Sum_probs=65.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhc---cCC-CceeeecCCC--CCchhhhhhcCCCce-eEEE-eecCCchhHHHHHHhcC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEI---EGK-PYDVAATHHS--TPLPQLLLDALPHSF-VFFD-VDLKSGSGFDAVALKFG 75 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~---g~~-~~~v~~~~r~--~~~~~~~~~~~~~~~-~~~~-~D~~~~~~~~~~~~~~~ 75 (300)
-+|+||||+|.||.+|+-.++.- |.+ ...+++.+.. .+.+....-.+.+.. .+.. ..++. +. .+.++
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~-~~-~ea~~--- 198 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT-DL-DVAFK--- 198 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE-CC-HHHhC---
Confidence 37999999999999999998773 321 2556666653 222221111110100 0000 11111 11 22333
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC--CeEEEeec
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE--NLLIHLST 128 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~--~~~v~~SS 128 (300)
+.|+||-+||...... ..-.+.++.|+.-. ..+.++..+... .+++.+.|
T Consensus 199 daDvvIitag~prk~G--~~R~DLL~~N~~If-k~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 199 DAHVIVLLDDFLIKEG--EDLEGCIRSRVAIC-QLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred CCCEEEECCCCCCCcC--CCHHHHHHHHHHHH-HHHHHHHHHhCCCCCeEEEEeC
Confidence 8999999999754322 23456677887665 377777777554 46666664
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.058 Score=45.93 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
...+|+|.| .|.+|+.+++.|+..|- -++.+.+.+
T Consensus 26 ~~s~VlIvG-~GGLGs~va~~LA~aGV--G~i~lvD~D 60 (287)
T PRK08223 26 RNSRVAIAG-LGGVGGIHLLTLARLGI--GKFTIADFD 60 (287)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 457899999 78899999999999994 345555554
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.026 Score=49.07 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=53.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+++|+|+|+. .+|..-++.+...| .+|++.+|++++.+...+ ++. . +..|.+|++..+.+.+ ..|+++.
T Consensus 167 G~~V~I~G~G-GlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~-lGA--d-~~i~~~~~~~~~~~~~---~~d~ii~ 235 (339)
T COG1064 167 GKWVAVVGAG-GLGHMAVQYAKAMG---AEVIAITRSEEKLELAKK-LGA--D-HVINSSDSDALEAVKE---IADAIID 235 (339)
T ss_pred CCEEEEECCc-HHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHH-hCC--c-EEEEcCCchhhHHhHh---hCcEEEE
Confidence 6789999966 99999999999999 899999999776654433 222 1 3344446665666554 4899999
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+++
T Consensus 236 tv~ 238 (339)
T COG1064 236 TVG 238 (339)
T ss_pred CCC
Confidence 987
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.034 Score=46.55 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=50.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|||.|||+ =|+.|++.|.++| + |++..-..- ...+............+-+.+.+.+.+.+++. +++.||..
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g---~-v~~sv~t~~-g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~-~i~~vIDA 73 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAG---Y-VIVSVATSY-GGELLKPELPGLEVRVGRLGDEEGLAEFLREN-GIDAVIDA 73 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcC---C-EEEEEEhhh-hHhhhccccCCceEEECCCCCHHHHHHHHHhC-CCcEEEEC
Confidence 7999999986 6899999999999 6 443333211 11122111133454566666888888888776 99999996
Q ss_pred c
Q 022280 84 A 84 (300)
Q Consensus 84 a 84 (300)
.
T Consensus 74 T 74 (249)
T PF02571_consen 74 T 74 (249)
T ss_pred C
Confidence 3
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.014 Score=52.99 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|.|+ |-+|+.+++.|...|. .+|++..|+.++...+...++.. .+ + .+++.+.+. +.|+||
T Consensus 179 ~~~~VlViGa-G~iG~~~a~~L~~~G~--~~V~v~~rs~~ra~~la~~~g~~--~i--~---~~~l~~~l~---~aDvVi 245 (417)
T TIGR01035 179 KGKKALLIGA-GEMGELVAKHLLRKGV--GKILIANRTYERAEDLAKELGGE--AV--K---FEDLEEYLA---EADIVI 245 (417)
T ss_pred cCCEEEEECC-hHHHHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHcCCe--Ee--e---HHHHHHHHh---hCCEEE
Confidence 4679999995 9999999999999884 46888888876665565554321 11 1 123444444 899999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.+.+.
T Consensus 246 ~aT~s 250 (417)
T TIGR01035 246 SSTGA 250 (417)
T ss_pred ECCCC
Confidence 98653
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.014 Score=41.07 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=46.6
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
||.|.| +|-+|++|++.|++.|....+|... .|++++..++.++++..+. . .+..++.+ ..|+||-+
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~--~------~~~~~~~~---~advvila 68 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQAT--A------DDNEEAAQ---EADVVILA 68 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEE--S------EEHHHHHH---HTSEEEE-
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccc--c------CChHHhhc---cCCEEEEE
Confidence 577785 9999999999999998322578744 8887777777766542211 1 11344555 78999998
Q ss_pred cc
Q 022280 84 AA 85 (300)
Q Consensus 84 a~ 85 (300)
.-
T Consensus 69 v~ 70 (96)
T PF03807_consen 69 VK 70 (96)
T ss_dssp S-
T ss_pred EC
Confidence 53
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.05 Score=46.02 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
...+|+|.| .|.+|+++++.|+..|- -++++.+.+
T Consensus 29 ~~s~VlVvG-~GGVGs~vae~Lar~GV--g~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVG-IGGVGSWAAEALARTGI--GAITLIDMD 63 (268)
T ss_pred cCCCEEEEC-cCHHHHHHHHHHHHcCC--CEEEEEeCC
Confidence 457899999 88999999999999994 245555544
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.04 Score=47.86 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=65.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEE-EeecCCchhHHHHHHhcCCCCEEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFF-DVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
|+|.|.|+ |.+|..++..|+.+|.- .+|++.+++++........+.+...+. ...+.. .+++. + .+.|+||.
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~-~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~-~d~~~-l---~~aDiVii 73 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLA-SEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA-GDYAD-C---KGADVVVI 73 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCC-CEEEEEECCchhhhhHHHHHHccccccCCeEEee-CCHHH-h---CCCCEEEE
Confidence 47999996 99999999999999842 478888887654432111110000000 001111 12222 3 38999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEee
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLS 127 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~S 127 (300)
+++..... ..........|+.-. ..+++.+.+.+.+-++.+-
T Consensus 74 ta~~~~~~--~~~r~dl~~~n~~i~-~~~~~~l~~~~~~giiiv~ 115 (308)
T cd05292 74 TAGANQKP--GETRLDLLKRNVAIF-KEIIPQILKYAPDAILLVV 115 (308)
T ss_pred ccCCCCCC--CCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEe
Confidence 99864322 123344566666554 3677777776554333333
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.021 Score=51.00 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=31.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+++|.|.||.|.+|..+++.|.+.| ++|++.+|+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC---CeEEEeCCC
Confidence 4789999999999999999999999 889888875
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.025 Score=50.65 Aligned_cols=70 Identities=24% Similarity=0.425 Sum_probs=52.9
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEcc
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCA 84 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~a 84 (300)
||+|+| +|.+|..+++.+.+.| ++|++++.++...... +.+ ..+..|..|++.+.++.+++ ++|+|+-..
T Consensus 1 kililG-~g~~~~~l~~aa~~~G---~~v~~~d~~~~~~~~~---~ad--~~~~~~~~d~~~l~~~~~~~-~id~v~~~~ 70 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQRLG---VEVIAVDRYANAPAMQ---VAH--RSYVINMLDGDALRAVIERE-KPDYIVPEI 70 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcC---CEEEEEeCCCCCchhh---hCc--eEEEcCCCCHHHHHHHHHHh-CCCEEEecc
Confidence 689999 6999999999999999 8999998875432211 111 23567888888888887766 899998653
|
This enzyme is an alternative to PurN (TIGR00639) |
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.049 Score=46.23 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=60.2
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh-------------------hhhhcCCCceeEEEeec----
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ-------------------LLLDALPHSFVFFDVDL---- 61 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~-------------------~~~~~~~~~~~~~~~D~---- 61 (300)
=|.|.| .|.+|++++.-|++.|. -++.+++-..-... -+.+.+..-..+.+.|.
T Consensus 76 yVVVVG-~GgVGSwv~nmL~RSG~--qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l 152 (430)
T KOG2018|consen 76 YVVVVG-AGGVGSWVANMLLRSGV--QKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNML 152 (430)
T ss_pred EEEEEe-cCchhHHHHHHHHHhcC--ceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhh
Confidence 366677 78899999999999995 23444443211111 11111122233444442
Q ss_pred CCchhHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCC
Q 022280 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135 (300)
Q Consensus 62 ~~~~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~ 135 (300)
.++++-+.++. ++||.|+.|. -|+...+ .|++.|-.+|.+ .+||+++-..+
T Consensus 153 ~~~~s~edll~--gnPdFvvDci-----------------DNidtKV-dLL~y~~~~~l~---Viss~Gaaaks 203 (430)
T KOG2018|consen 153 WTSSSEEDLLS--GNPDFVVDCI-----------------DNIDTKV-DLLEYCYNHGLK---VISSTGAAAKS 203 (430)
T ss_pred cCCCchhhhhc--CCCCeEeEhh-----------------hhhhhhh-HHHHHHHHcCCc---eEeccCccccC
Confidence 23333344443 4788888884 2444444 999999998884 35666654443
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.03 Score=48.21 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=26.4
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH 37 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~ 37 (300)
-+|.|.|||||.|..|++.|...-+ .++..+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~--~el~~l~ 33 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD--IELLSIA 33 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC--eEEEEEe
Confidence 3799999999999999999999864 5665543
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.15 Score=44.99 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=80.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchh--------HHHHHH--
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSG--------FDAVAL-- 72 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~~~~-- 72 (300)
|.+|||.| ||=.+-.|+.-+.+.+. .+|=+..|...+-+.+++.+...-..++..+-+... ++..++
T Consensus 1 m~~VLI~G-tGPvAiQLAv~lk~~~~--~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~ 77 (429)
T PF10100_consen 1 MGNVLIVG-TGPVAIQLAVILKKHGN--CRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDY 77 (429)
T ss_pred CCceEEEc-CCHHHHHHHHHHHhccC--ceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCH
Confidence 56899999 99999999999887774 568778887666666665553322334555444331 222221
Q ss_pred --hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhh---hccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 73 --KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT---ENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 73 --~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~---~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
-.+.+|.+|-+-. .+.+ ..+++... -.++|++|.+|+.-.
T Consensus 78 ~~i~g~WdtlILavt----------aDAY---------~~VL~ql~~~~L~~vk~iVLvSPtfG---------------- 122 (429)
T PF10100_consen 78 EEIEGEWDTLILAVT----------ADAY---------LDVLQQLPWEVLKRVKSIVLVSPTFG---------------- 122 (429)
T ss_pred HHhcccccEEEEEec----------hHHH---------HHHHHhcCHHHHhhCCEEEEECcccc----------------
Confidence 1246777776521 0111 13333322 257889999997432
Q ss_pred CChhHHHHHHHHHHHHHHcCCceeEeeeeeeCCC
Q 022280 148 VNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQ 181 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~~~~ilR~~~v~G~~ 181 (300)
|-..++.++...+...-|+-+++-||.+
T Consensus 123 ------S~~lv~~~l~~~~~~~EVISFStY~gdT 150 (429)
T PF10100_consen 123 ------SHLLVKGFLNDLGPDAEVISFSTYYGDT 150 (429)
T ss_pred ------hHHHHHHHHHhcCCCceEEEeecccccc
Confidence 3445556666666666667777777765
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.026 Score=48.94 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=67.2
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCC--------ceeEEEeecCCchhHHHHHHhcCC
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH--------SFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
||.|.|+ |.+|+.++-.|+.++.- -++++.+...+........+.+ .+.. .. .+ ++ .+.+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~-~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i-~~--~~---y~----~~~~ 68 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLF-SEIVLIDVNEGVAEGEALDFHHATALTYSTNTKI-RA--GD---YD----DCAD 68 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCC-CEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEE-EE--CC---HH----HhCC
Confidence 5889997 99999999999988742 3688888765543322211111 2221 11 12 22 2238
Q ss_pred CCEEEEcccccCccccccC-hhhhhhcccccchHHHHHhhhhccCCeEEEee
Q 022280 77 PDVVVNCAALSVPRVCEND-PDSAMSINVPSSLVNWLSSFTENKENLLIHLS 127 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~-~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~S 127 (300)
.|+||-+||....+. ... -.+.+..|+.-. ..+.+.+.+++...++.+-
T Consensus 69 aDivvitaG~~~kpg-~tr~R~dll~~N~~I~-~~i~~~i~~~~p~~i~ivv 118 (307)
T cd05290 69 ADIIVITAGPSIDPG-NTDDRLDLAQTNAKII-REIMGNITKVTKEAVIILI 118 (307)
T ss_pred CCEEEECCCCCCCCC-CCchHHHHHHHHHHHH-HHHHHHHHHhCCCeEEEEe
Confidence 999999999753321 111 356677887766 3888888887765444443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.016 Score=50.00 Aligned_cols=76 Identities=20% Similarity=0.176 Sum_probs=50.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+++|+|++|.+|..+++.+...| .+|+++.++.+....+ ..++. . ...|..+.+....+.+.. +++|.+
T Consensus 140 ~~~vlv~g~~~~ig~~~~~~~~~~g---~~v~~~~~~~~~~~~~-~~~g~--~-~~~~~~~~~~~~~~~~~~~~~~~d~v 212 (323)
T cd05276 140 GETVLIHGGASGVGTAAIQLAKALG---ARVIATAGSEEKLEAC-RALGA--D-VAINYRTEDFAEEVKEATGGRGVDVI 212 (323)
T ss_pred CCEEEEEcCcChHHHHHHHHHHHcC---CEEEEEcCCHHHHHHH-HHcCC--C-EEEeCCchhHHHHHHHHhCCCCeEEE
Confidence 5689999999999999999999999 8899888875544433 22221 1 223333333223222221 369999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|++++
T Consensus 213 i~~~g 217 (323)
T cd05276 213 LDMVG 217 (323)
T ss_pred EECCc
Confidence 99987
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.018 Score=49.63 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++++|+|. |.+|+.+++.|...| .+|++..|+++...... ..+ ..++ ..+++.+.+ .+.|+||
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~G---a~V~v~~r~~~~~~~~~-~~G--~~~~-----~~~~l~~~l---~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALG---ANVTVGARKSAHLARIT-EMG--LSPF-----HLSELAEEV---GKIDIIF 215 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHH-HcC--Ceee-----cHHHHHHHh---CCCCEEE
Confidence 4689999995 789999999999999 88999998855433222 221 1211 112233333 3899999
Q ss_pred Ecc
Q 022280 82 NCA 84 (300)
Q Consensus 82 h~a 84 (300)
++.
T Consensus 216 ~t~ 218 (296)
T PRK08306 216 NTI 218 (296)
T ss_pred ECC
Confidence 975
|
|
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.1 Score=47.94 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEE-----eecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD-----VDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~-----~D~~~~~~~~~~~~~~~~ 76 (300)
|||+|||.| +|.+|..+++.+.+.| +++++++..++...... .+.+....+. -+..|.+.+.++.+.. +
T Consensus 1 ~~k~iLi~g-~g~~a~~i~~aa~~~G---~~vv~~~~~~d~~a~~~-~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~-~ 74 (451)
T PRK08591 1 MFDKILIAN-RGEIALRIIRACKELG---IKTVAVHSTADRDALHV-QLADEAVCIGPAPSKKSYLNIPAIISAAEIT-G 74 (451)
T ss_pred CcceEEEEC-CCHHHHHHHHHHHHcC---CeEEEEcChhhccCCCH-hHCCEEEEeCCCCcccccCCHHHHHHHHHHh-C
Confidence 378999997 8999999999999999 88888765533211110 1111111110 1344555555565555 8
Q ss_pred CCEEEEccc
Q 022280 77 PDVVVNCAA 85 (300)
Q Consensus 77 ~d~vih~a~ 85 (300)
+|+|+-..+
T Consensus 75 id~I~p~~~ 83 (451)
T PRK08591 75 ADAIHPGYG 83 (451)
T ss_pred CCEEEECCC
Confidence 999988654
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.014 Score=43.39 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=43.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecC-CCCCchhhhhhcCCC-----------ceeEEEeecCCchhHHHH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH-HSTPLPQLLLDALPH-----------SFVFFDVDLKSGSGFDAV 70 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~-r~~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~ 70 (300)
.++|-|.| +|-+|++|.+.|.+.| ++|.... |+....+.+...++. ....+..-+.|. .+..+
T Consensus 10 ~l~I~iIG-aGrVG~~La~aL~~ag---~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~v 84 (127)
T PF10727_consen 10 RLKIGIIG-AGRVGTALARALARAG---HEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEV 84 (127)
T ss_dssp --EEEEEC-TSCCCCHHHHHHHHTT---SEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHH
T ss_pred ccEEEEEC-CCHHHHHHHHHHHHCC---CeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHH
Confidence 46899999 5999999999999999 7887764 443333333322211 122222223332 35555
Q ss_pred HHhcC------CCCEEEEccccc
Q 022280 71 ALKFG------QPDVVVNCAALS 87 (300)
Q Consensus 71 ~~~~~------~~d~vih~a~~~ 87 (300)
.+++. .=..|+||.|-.
T Consensus 85 a~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 85 AEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp HHHHHCC--S-TT-EEEES-SS-
T ss_pred HHHHHHhccCCCCcEEEECCCCC
Confidence 54431 235999998854
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.057 Score=42.67 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=26.6
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+|+|.| .|.+|+.+++.|+..|- -++++.+.+
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gv--g~i~lvD~D 32 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGV--GNLKLVDFD 32 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence 589999 69999999999999993 247777765
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.031 Score=47.95 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC---chhhhhhcCCCce--eEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP---LPQLLLDALPHSF--VFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~---~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
.+++++|.|+ |+.+++++-.|+..|. -++++..|+++ +...+.+.++... .....++.+.+.+.+ ...+
T Consensus 123 ~~k~vlvlGa-GGaarAi~~~l~~~g~--~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~---~~~~ 196 (288)
T PRK12749 123 KGKTMVLLGA-GGASTAIGAQGAIEGL--KEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE---ALAS 196 (288)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh---hccc
Confidence 4578999995 6669999999999884 37888899853 5555555443211 101112211111222 2237
Q ss_pred CCEEEEccc
Q 022280 77 PDVVVNCAA 85 (300)
Q Consensus 77 ~d~vih~a~ 85 (300)
.|+|||+-.
T Consensus 197 aDivINaTp 205 (288)
T PRK12749 197 ADILTNGTK 205 (288)
T ss_pred CCEEEECCC
Confidence 899999743
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.073 Score=44.08 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
...+|+|.| .|.+|+++++.|+..|- -++++.+..
T Consensus 10 ~~~~VlVvG-~GGvGs~va~~Lar~GV--g~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVG-LGGVGSWAAEALARSGV--GKLTLIDFD 44 (231)
T ss_pred hCCCEEEEC-CCHHHHHHHHHHHHcCC--CEEEEECCC
Confidence 467899999 88999999999999994 356666654
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.034 Score=56.60 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCcc-chH---------HHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH
Q 022280 2 SKKRVLVVGGTGY-LGQ---------HLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 2 ~~~~ilItGatG~-iG~---------~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (300)
.+++|||+|++.. ||+ +++++|.+.| ++|++++.+++....-.+ ..+. +..+-.+.+.+.++.
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G---~~vi~v~~npetvs~~~~-~aD~---~y~e~~~~e~v~~i~ 625 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAG---YETIMVNCNPETVSTDYD-TSDR---LYFEPLTLEDVLEII 625 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCC---CEEEEEeCCccccccccc-hhhh---eeecCCCHHHHHHHH
Confidence 3579999998765 775 4699999999 899999888655321110 0111 223444566677777
Q ss_pred HhcCCCCEEEEccc
Q 022280 72 LKFGQPDVVVNCAA 85 (300)
Q Consensus 72 ~~~~~~d~vih~a~ 85 (300)
++. ++|.|+-..|
T Consensus 626 ~~e-~~dgVi~~~g 638 (1066)
T PRK05294 626 EKE-KPKGVIVQFG 638 (1066)
T ss_pred HHc-CCCEEEEEeC
Confidence 776 8999887544
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.04 Score=55.97 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=48.3
Q ss_pred CCeEEEEcCCcc-chH---------HHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH
Q 022280 3 KKRVLVVGGTGY-LGQ---------HLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 3 ~~~ilItGatG~-iG~---------~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
.++|||+|++.. ||+ ++++.|.+.| ++|+++..+++....-.+ ..+. ...|-.+.+.+.++.+
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G---~~vI~v~~npetvs~d~~-~~D~---ly~ep~~~e~vl~i~~ 626 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELG---YETIMINYNPETVSTDYD-TSDR---LYFEPLTFEDVMNIIE 626 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCC---CEEEEEecCCcccccccc-ccce---EEEecCCHHHHHHHHh
Confidence 468999997755 666 6799999999 899998887655321111 1111 1223334555666666
Q ss_pred hcCCCCEEEEcc
Q 022280 73 KFGQPDVVVNCA 84 (300)
Q Consensus 73 ~~~~~d~vih~a 84 (300)
+. ++|.|+-..
T Consensus 627 ~e-~idgVI~~~ 637 (1050)
T TIGR01369 627 LE-KPEGVIVQF 637 (1050)
T ss_pred hc-CCCEEEEcc
Confidence 66 899998543
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.035 Score=48.95 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=49.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+.+|+|+|+ |.+|...++.+...| . +|+++++++++.+.+ .+++.. ...|..+. ++.+..+..+++|+||
T Consensus 170 g~~VlV~G~-G~vG~~aiqlak~~G---~~~Vi~~~~~~~~~~~a-~~lGa~---~vi~~~~~-~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 170 GKRVFVSGV-GPIGCLIVAAVKTLG---AAEIVCADVSPRSLSLA-REMGAD---KLVNPQND-DLDHYKAEKGYFDVSF 240 (343)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CcEEEEEeCCHHHHHHH-HHcCCc---EEecCCcc-cHHHHhccCCCCCEEE
Confidence 578999985 999999999999999 6 588888886655433 334322 12343332 2344333334589999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+.|
T Consensus 241 d~~G 244 (343)
T PRK09880 241 EVSG 244 (343)
T ss_pred ECCC
Confidence 9987
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.04 Score=48.73 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=21.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhcc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIE 27 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g 27 (300)
|++|.|.||||++|+.|++.|+++-
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~ 25 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN 25 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999555544
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.036 Score=48.60 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=22.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhh-cc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSE-IE 27 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~-~g 27 (300)
.++|.|.||||++|+.+++.|.+ ..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~ 30 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETK 30 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCC
Confidence 46899999999999999999995 55
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.091 Score=48.21 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=26.9
Q ss_pred EEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 8 VVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 8 ItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
|+||+|.+|.++++.|...| .+|+++.+.+.
T Consensus 43 l~~~~~g~~~~~~~~~~~~g---~~v~~~~~~~~ 73 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLG---YDVVANNDGGL 73 (450)
T ss_pred EEccCchhHHHHHHHHhhCC---CeeeecCcccc
Confidence 88889999999999999999 88988766543
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.071 Score=47.49 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+..+|+|.| .|.+|..+++.|+..|- -++++.+.+
T Consensus 40 ~~~~VliiG-~GglG~~v~~~La~~Gv--g~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIG-AGGLGCPAMQSLASAGV--GTITLIDDD 74 (370)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCC--CEEEEEeCC
Confidence 457899999 78999999999999994 366666665
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.042 Score=47.91 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=49.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
|++|.|+| +|.+|+.++.+-..-| ++|++++-.++...... .+ ..+..+..|+++++++.+ ++|+|=
T Consensus 1 ~~tvgIlG-GGQLgrMm~~aa~~lG---~~v~vLdp~~~~PA~~v---a~--~~i~~~~dD~~al~ela~---~~DViT 67 (375)
T COG0026 1 MKTVGILG-GGQLGRMMALAAARLG---IKVIVLDPDADAPAAQV---AD--RVIVAAYDDPEALRELAA---KCDVIT 67 (375)
T ss_pred CCeEEEEc-CcHHHHHHHHHHHhcC---CEEEEecCCCCCchhhc---cc--ceeecCCCCHHHHHHHHh---hCCEEE
Confidence 57899999 8999999999999999 89999987654332111 11 125666678888888777 677764
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.072 Score=47.91 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+..+|+|.| .|.+|..+++.|+..|- -++++.+..
T Consensus 41 ~~~~VlviG-~GGlGs~va~~La~~Gv--g~i~lvD~D 75 (392)
T PRK07878 41 KNARVLVIG-AGGLGSPTLLYLAAAGV--GTLGIVEFD 75 (392)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHcCC--CeEEEECCC
Confidence 457899999 88999999999999994 245555554
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.14 Score=43.51 Aligned_cols=103 Identities=15% Similarity=0.072 Sum_probs=69.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh-c-CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK-F-GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~-~~~d~v 80 (300)
+.+++|+||+|-+|+-..+-..-+| .+|++..-++++...+.+.++-. .-.|..+.+ +.+.+++ . .++|+.
T Consensus 151 GetvvVSaAaGaVGsvvgQiAKlkG---~rVVGiaGg~eK~~~l~~~lGfD---~~idyk~~d-~~~~L~~a~P~GIDvy 223 (340)
T COG2130 151 GETVVVSAAAGAVGSVVGQIAKLKG---CRVVGIAGGAEKCDFLTEELGFD---AGIDYKAED-FAQALKEACPKGIDVY 223 (340)
T ss_pred CCEEEEEecccccchHHHHHHHhhC---CeEEEecCCHHHHHHHHHhcCCc---eeeecCccc-HHHHHHHHCCCCeEEE
Confidence 5789999999999999998888889 89999988877777666544221 223444443 3333333 2 378999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhh-ccC-CeEEEeeccccccCC
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE-NKE-NLLIHLSTDQVYEGV 135 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~-~~~-~~~v~~SS~~~~~~~ 135 (300)
|.|.|- .+++++.. .+. .|++.++-++.|...
T Consensus 224 feNVGg-----------------------~v~DAv~~~ln~~aRi~~CG~IS~YN~~ 257 (340)
T COG2130 224 FENVGG-----------------------EVLDAVLPLLNLFARIPVCGAISQYNAP 257 (340)
T ss_pred EEcCCc-----------------------hHHHHHHHhhccccceeeeeehhhcCCC
Confidence 998773 22222222 122 389999988888765
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.05 Score=52.45 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc--eeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY--DVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~--~v~~~~r~ 39 (300)
...+|+|.|. | +|++++..|+..| . ++++++..
T Consensus 106 ~~~~V~IvG~-G-lGs~~a~~LaraG---vvG~l~lvD~D 140 (722)
T PRK07877 106 GRLRIGVVGL-S-VGHAIAHTLAAEG---LCGELRLADFD 140 (722)
T ss_pred hcCCEEEEEe-c-HHHHHHHHHHHcc---CCCeEEEEcCC
Confidence 4578999999 7 9999999999998 4 56666654
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.027 Score=47.28 Aligned_cols=75 Identities=24% Similarity=0.199 Sum_probs=49.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH-HhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA-LKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~~~d~vi 81 (300)
+.+|+|+|+++ +|+.+++.+...| .+|+++.+++++.+.+. ..+. . ...|..+.+....+. ...+++|.+|
T Consensus 135 ~~~vli~g~~~-~G~~~~~~a~~~g---~~v~~~~~~~~~~~~~~-~~g~--~-~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 135 GDTVLVLGAGG-VGLLAAQLAKAAG---ARVIVTDRSDEKLELAK-ELGA--D-HVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHcC---CeEEEEcCCHHHHHHHH-HhCC--c-eeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 56899999999 9999999999999 88999988765444332 2221 1 122333333222221 1123799999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
++++
T Consensus 207 ~~~~ 210 (271)
T cd05188 207 DAVG 210 (271)
T ss_pred ECCC
Confidence 9876
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.11 Score=45.07 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=26.1
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+|||.| .|.+|.++++.|+..|- -++.+++..
T Consensus 1 kVlIVG-aGGlG~EiaKnLal~Gv--g~ItIvD~D 32 (312)
T cd01489 1 KVLVVG-AGGIGCELLKNLVLTGF--GEIHIIDLD 32 (312)
T ss_pred CEEEEC-CCHHHHHHHHHHHHhcC--CeEEEEcCC
Confidence 589999 59999999999999995 356666654
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.049 Score=48.00 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhhhcCC--------Ccee-EEEeecCCchhHHHHHH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLLDALP--------HSFV-FFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~~~~~--------~~~~-~~~~D~~~~~~~~~~~~ 72 (300)
|+||.|.|. |-||+.+++.+.++.+ .++++...+.. ....+....+ .... +-..++.-....+.+++
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d--~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPD--MELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCC--cEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 568999998 9999999999887533 78877665422 1122222111 0000 00001111112344443
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecc
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTD 129 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (300)
++|+||.|.+.... ...++.+.++| +++|.-|+.
T Consensus 78 ---~vDVVIdaT~~~~~-------------------~e~a~~~~~aG-k~VI~~~~~ 111 (341)
T PRK04207 78 ---KADIVVDATPGGVG-------------------AKNKELYEKAG-VKAIFQGGE 111 (341)
T ss_pred ---cCCEEEECCCchhh-------------------HHHHHHHHHCC-CEEEEcCCC
Confidence 79999999753211 25666777778 477777764
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.017 Score=54.49 Aligned_cols=71 Identities=13% Similarity=0.063 Sum_probs=55.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
.+++|.| .|-+|+++++.|.++| ++|++.+.++++.+.+.+ .....+.+|.+|++.++++- ..++|.|+-+
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~~~g---~~vvvId~d~~~~~~~~~---~g~~~i~GD~~~~~~L~~a~--i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLLAAG---IPLVVIETSRTRVDELRE---RGIRAVLGNAANEEIMQLAH--LDCARWLLLT 488 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHH---CCCeEEEcCCCCHHHHHhcC--ccccCEEEEE
Confidence 4688888 8999999999999999 789999988777666653 35667899999987665532 2377877665
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.036 Score=47.35 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
.+++|+|.|++|.+|+.++..|+++| .+|++..|
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~g---atVtv~~~ 191 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNAN---ATVTICHS 191 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCC---CEEEEEeC
Confidence 57899999999999999999999999 77766544
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.035 Score=47.13 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=35.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD 48 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~ 48 (300)
|||+|.|.| .|-+|+.+++.|.+.|..+++|.+.+|+++..+.+.+
T Consensus 1 ~mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~ 46 (267)
T PRK11880 1 MMKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAE 46 (267)
T ss_pred CCCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHH
Confidence 367899999 6999999999999988433578888888665554443
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.062 Score=45.79 Aligned_cols=121 Identities=13% Similarity=0.164 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|.| .|.||..+++.|.++| +.+.+.+++......... .+.++.|.-......+.....|+||
T Consensus 2 ~~~~v~IvG-~GliG~s~a~~l~~~g---~~v~i~g~d~~~~~~~~a--------~~lgv~d~~~~~~~~~~~~~aD~Vi 69 (279)
T COG0287 2 ASMKVGIVG-LGLMGGSLARALKEAG---LVVRIIGRDRSAATLKAA--------LELGVIDELTVAGLAEAAAEADLVI 69 (279)
T ss_pred CCcEEEEEC-CchHHHHHHHHHHHcC---CeEEEEeecCcHHHHHHH--------hhcCcccccccchhhhhcccCCEEE
Confidence 456777777 9999999999999999 667666665433221111 1233333211011122222689998
Q ss_pred EcccccCccc-----cccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccC
Q 022280 82 NCAALSVPRV-----CENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEG 134 (300)
Q Consensus 82 h~a~~~~~~~-----~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~ 134 (300)
-+.-+..... ...-+....-+.+.++....++++.+...+..-+++..=.+|+
T Consensus 70 vavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~ 127 (279)
T COG0287 70 VAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGP 127 (279)
T ss_pred EeccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCC
Confidence 8754322110 0011223344556666557788888766543355565555555
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.031 Score=48.76 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=50.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~vi 81 (300)
+.++||.|++|.+|..+++.+...| .+|+++.+++++...+.+.++. . ...|..+.+..+.+.+.. +++|+++
T Consensus 146 ~~~vlI~g~~g~ig~~~~~~a~~~G---~~vi~~~~~~~~~~~~~~~~g~--~-~~~~~~~~~~~~~v~~~~~~~~d~vi 219 (329)
T cd05288 146 GETVVVSAAAGAVGSVVGQIAKLLG---ARVVGIAGSDEKCRWLVEELGF--D-AAINYKTPDLAEALKEAAPDGIDVYF 219 (329)
T ss_pred CCEEEEecCcchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHhhcCC--c-eEEecCChhHHHHHHHhccCCceEEE
Confidence 4689999999999999999999999 8898888776554433322321 1 122333322222222211 3799999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
++.|
T Consensus 220 ~~~g 223 (329)
T cd05288 220 DNVG 223 (329)
T ss_pred Ecch
Confidence 9876
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.033 Score=48.19 Aligned_cols=76 Identities=18% Similarity=0.076 Sum_probs=49.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+++|+|++|.+|+.+++.+...| .+|+++.++.++...+ ...+ +. ...|....+..+.+.+.. .++|.+
T Consensus 145 ~~~vli~g~~~~~g~~~~~~~~~~g---~~v~~~~~~~~~~~~~-~~~g--~~-~~~~~~~~~~~~~~~~~~~~~~~d~v 217 (328)
T cd08268 145 GDSVLITAASSSVGLAAIQIANAAG---ATVIATTRTSEKRDAL-LALG--AA-HVIVTDEEDLVAEVLRITGGKGVDVV 217 (328)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcC---CEEEEEcCCHHHHHHH-HHcC--CC-EEEecCCccHHHHHHHHhCCCCceEE
Confidence 4689999999999999999999999 8899988876554444 2222 11 122322222222222222 269999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
+++++
T Consensus 218 i~~~~ 222 (328)
T cd08268 218 FDPVG 222 (328)
T ss_pred EECCc
Confidence 99876
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.032 Score=48.48 Aligned_cols=76 Identities=12% Similarity=-0.019 Sum_probs=50.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.++||.|++|.+|..+++.+...| .+|+++.++.+....+.+ ++ +. ...+..+.+..+.+.+.. .++|.|
T Consensus 140 g~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~~~~~~~~~~~-~g--~~-~~~~~~~~~~~~~i~~~~~~~~~d~v 212 (324)
T cd08292 140 GQWLIQNAAGGAVGKLVAMLAAARG---INVINLVRRDAGVAELRA-LG--IG-PVVSTEQPGWQDKVREAAGGAPISVA 212 (324)
T ss_pred CCEEEEcccccHHHHHHHHHHHHCC---CeEEEEecCHHHHHHHHh-cC--CC-EEEcCCCchHHHHHHHHhCCCCCcEE
Confidence 5689999999999999999999999 889888887665554443 22 22 122333322223332222 269999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|++.|
T Consensus 213 ~d~~g 217 (324)
T cd08292 213 LDSVG 217 (324)
T ss_pred EECCC
Confidence 99876
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.12 Score=41.74 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~ 39 (300)
..++|+|.| .|.+|+.+++.|+..| + ++++.+++
T Consensus 20 ~~~~V~IvG-~GglGs~ia~~La~~G---vg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICG-LGGLGSNVAINLARAG---IGKLILVDFD 54 (200)
T ss_pred hCCcEEEEC-cCHHHHHHHHHHHHcC---CCEEEEECCC
Confidence 457899999 5889999999999999 5 68888876
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.056 Score=45.83 Aligned_cols=71 Identities=25% Similarity=0.298 Sum_probs=41.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
|+||.|.|. |.||+.+++.|.+... .++.+...+..............+. + ..| ++++ . .++|+|+-
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~--~~l~~v~~~~~~~~~~~~~~~~~~~-~---~~d---~~~l-~--~~~DvVve 67 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPD--LRVDWVIVPEHSIDAVRRALGEAVR-V---VSS---VDAL-P--QRPDLVVE 67 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCC--ceEEEEEEcCCCHHHHhhhhccCCe-e---eCC---HHHh-c--cCCCEEEE
Confidence 479999996 9999999999987632 5555544332222222211111111 1 122 3333 2 27999999
Q ss_pred cccc
Q 022280 83 CAAL 86 (300)
Q Consensus 83 ~a~~ 86 (300)
|++.
T Consensus 68 ~t~~ 71 (265)
T PRK13303 68 CAGH 71 (265)
T ss_pred CCCH
Confidence 9874
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.07 Score=45.82 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCch-hhhhhcCCCceeEEEeecCCchhHHHHHHh--cCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLP-QLLLDALPHSFVFFDVDLKSGSGFDAVALK--FGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~~ 76 (300)
|++.+|.|.| +|.||+.+...+++... .++.++... ++.. ....++++ +. ...++++.+++. +.+
T Consensus 2 m~klrVAIIG-tG~IGt~hm~~l~~~~~--velvAVvdid~es~gla~A~~~G--i~------~~~~~ie~LL~~~~~~d 70 (302)
T PRK08300 2 MSKLKVAIIG-SGNIGTDLMIKILRSEH--LEPGAMVGIDPESDGLARARRLG--VA------TSAEGIDGLLAMPEFDD 70 (302)
T ss_pred CCCCeEEEEc-CcHHHHHHHHHHhcCCC--cEEEEEEeCChhhHHHHHHHHcC--CC------cccCCHHHHHhCcCCCC
Confidence 4467899999 99999998888886432 677655433 3211 12222221 11 112335666654 347
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
+|+||.+.+... . ......+.+.|+ ++|-.++..
T Consensus 71 IDiVf~AT~a~~-----------H--------~e~a~~a~eaGk-~VID~sPA~ 104 (302)
T PRK08300 71 IDIVFDATSAGA-----------H--------VRHAAKLREAGI-RAIDLTPAA 104 (302)
T ss_pred CCEEEECCCHHH-----------H--------HHHHHHHHHcCC-eEEECCccc
Confidence 999999865210 0 256666677776 777777766
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.051 Score=55.26 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCcc-chHHH---------HHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH
Q 022280 2 SKKRVLVVGGTGY-LGQHL---------LQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 2 ~~~~ilItGatG~-iG~~l---------~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (300)
.+++|||+|+..+ ||+.+ ++.|.+.| +++++++.+++....-.. ..+. ...+-.+.+.+.++.
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G---~~vI~vn~npetvs~~~~-~aD~---~y~ep~~~e~vl~I~ 626 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEG---YETIMINNNPETVSTDYD-TADR---LYFEPLTLEDVLNVA 626 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcC---CEEEEEeCCccccccccc-cCce---EEEccCCHHHHHHHH
Confidence 3689999998754 77644 99999999 899999888754332111 0111 122333456666777
Q ss_pred HhcCCCCEEEEc
Q 022280 72 LKFGQPDVVVNC 83 (300)
Q Consensus 72 ~~~~~~d~vih~ 83 (300)
++. +||.||-.
T Consensus 627 ~~e-~~dgVI~~ 637 (1068)
T PRK12815 627 EAE-NIKGVIVQ 637 (1068)
T ss_pred hhc-CCCEEEEe
Confidence 666 89999874
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.056 Score=46.95 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|.|.| .|-||+.+++.|..-| ++|++.+++.+... .+. . ....++++++++ +.|+|+
T Consensus 135 ~g~tvgIvG-~G~IG~~vA~~l~afG---~~V~~~~~~~~~~~--------~~~--~--~~~~~~l~e~l~---~aDvvv 195 (312)
T PRK15469 135 EDFTIGILG-AGVLGSKVAQSLQTWG---FPLRCWSRSRKSWP--------GVQ--S--FAGREELSAFLS---QTRVLI 195 (312)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEeCCCCCCC--------Cce--e--ecccccHHHHHh---cCCEEE
Confidence 468999999 9999999999999999 89998887643211 111 1 112345677776 899999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+..
T Consensus 196 ~~lP 199 (312)
T PRK15469 196 NLLP 199 (312)
T ss_pred ECCC
Confidence 8864
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.025 Score=48.83 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=46.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+|+|.|.| .|.+|+.+++.|++.| ++|++.+|+++....+... ++. . .++..++++ ++|+||-
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g---~~v~~~d~~~~~~~~~~~~---g~~-----~--~~~~~e~~~---~~d~vi~ 64 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAG---YSLVVYDRNPEAVAEVIAA---GAE-----T--ASTAKAVAE---QCDVIIT 64 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCC---CeEEEEcCCHHHHHHHHHC---CCe-----e--cCCHHHHHh---cCCEEEE
Confidence 57899998 8999999999999999 8899888886555443321 111 1 112344444 7898888
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+..
T Consensus 65 ~vp 67 (296)
T PRK11559 65 MLP 67 (296)
T ss_pred eCC
Confidence 754
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.094 Score=45.46 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=65.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh-hhcCCCc-eeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL-LDALPHS-FVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~-~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
|+|-|.|+ |.+|..++..|+..|. .+|++.+...+..... .+..... .......++-..++++ + ...|+||
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~--~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~---~~aDiVI 74 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKEL--ADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-T---ANSDIVV 74 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCC--CeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-h---CCCCEEE
Confidence 68999995 9999999999999983 2788888864432211 1111110 0000111211112333 2 3899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEeec
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLST 128 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS 128 (300)
-++|..... .....+.+..|+.-.. .+++.+.+.+.. .+|.+|-
T Consensus 75 itag~p~~~--~~sR~~l~~~N~~iv~-~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 75 ITAGLPRKP--GMSREDLLSMNAGIVR-EVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred EcCCCCCCc--CCCHHHHHHHHHHHHH-HHHHHHHHHCCCeEEEEecC
Confidence 999964321 1123345666766553 677777665543 5555553
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.063 Score=45.76 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
+.+++|+|+|+++.+|+.++..|+++| .+|++..+
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~g---atVtv~~s 190 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKN---ASVTILHS 190 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC---CeEEEEeC
Confidence 358999999999999999999999999 77876654
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.057 Score=48.14 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=65.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCC----ceeeec--CCCCCchhhhhhcCCCce-eEE-EeecCCchhHHHHHHhcC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP----YDVAAT--HHSTPLPQLLLDALPHSF-VFF-DVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~----~~v~~~--~r~~~~~~~~~~~~~~~~-~~~-~~D~~~~~~~~~~~~~~~ 75 (300)
-||.|+|++|.+|++++-.|+..|.-- +.++++ +++.+........+.+.. .+. ..-++. ++. +.+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~-~~y----~~~k 119 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGI-DPY----EVFE 119 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEec-CCH----HHhC
Confidence 379999999999999999999888410 123333 555444332221111111 000 001111 111 2233
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CC-eEEEee
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-EN-LLIHLS 127 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~-~~v~~S 127 (300)
+.|+||-+||..... .....+.+..|+.-. ..+.+.+.+.. .. .+|.+|
T Consensus 120 daDIVVitAG~prkp--g~tR~dll~~N~~I~-k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 120 DADWALLIGAKPRGP--GMERADLLDINGQIF-ADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred CCCEEEECCCCCCCC--CCCHHHHHHHHHHHH-HHHHHHHHHhCCCCeEEEEcC
Confidence 899999999975332 224456778887766 37777777733 43 455555
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.028 Score=49.14 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=34.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD 48 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~ 48 (300)
||+|.|.| .|.+|..++..|++.| ++|.+.+|+++..+.+..
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~ 42 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNG---HDVTLWARDPEQAAEINA 42 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHH
Confidence 46899999 6999999999999999 889988887665554443
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.051 Score=48.15 Aligned_cols=51 Identities=20% Similarity=0.340 Sum_probs=36.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecC--CCCCchhhhhhcCCCce
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH--HSTPLPQLLLDALPHSF 54 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~--r~~~~~~~~~~~~~~~~ 54 (300)
||+|.|.|+||.||+..++.+.+.-.. ++|+++. ++.+...+...++++..
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~-f~VvaLaa~~n~~~l~~q~~~f~p~~ 53 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDR-FRVVALSAGKNVELLAEQAREFRPKY 53 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccc-cEEEEEEcCCCHHHHHHHHHHhCCCE
Confidence 579999999999999999888765333 8888875 33444555555555443
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.019 Score=51.97 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=37.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL 46 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~ 46 (300)
|.+|+|.|.| .|++|..++..|+++| ++|++.++++++...+
T Consensus 1 m~~~kI~VIG-lG~~G~~~A~~La~~G---~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 1 MSFETISVIG-LGYIGLPTAAAFASRQ---KQVIGVDINQHAVDTI 42 (415)
T ss_pred CCccEEEEEC-cchhhHHHHHHHHhCC---CEEEEEeCCHHHHHHH
Confidence 7789999998 8999999999999999 8999999987766654
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.033 Score=41.12 Aligned_cols=29 Identities=48% Similarity=0.846 Sum_probs=25.3
Q ss_pred eEEEEcCCccchHHHHHhhhhc-cCCCceeeec
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAAT 36 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~ 36 (300)
++.|+|++|.+|..+++.|.+. + +++.++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~---~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD---FEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC---ceEEEE
Confidence 5889999999999999999995 6 777776
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.076 Score=46.63 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=48.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCce-eeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~ 79 (300)
+.+|||+|+ |.+|..+++.+...| .+ |+++.+++++.+.+ .+++. . ...|..+.+ .+.+.+.. .++|+
T Consensus 164 g~~vlV~G~-G~vG~~~~~~ak~~G---~~~vi~~~~~~~~~~~~-~~~ga--~-~~i~~~~~~-~~~~~~~~~~~~~d~ 234 (339)
T cd08239 164 RDTVLVVGA-GPVGLGALMLARALG---AEDVIGVDPSPERLELA-KALGA--D-FVINSGQDD-VQEIRELTSGAGADV 234 (339)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CCEEEEECCCHHHHHHH-HHhCC--C-EEEcCCcch-HHHHHHHhCCCCCCE
Confidence 578999985 999999999999999 77 88888776554433 33332 1 223333332 33333222 26999
Q ss_pred EEEccc
Q 022280 80 VVNCAA 85 (300)
Q Consensus 80 vih~a~ 85 (300)
||.+.+
T Consensus 235 vid~~g 240 (339)
T cd08239 235 AIECSG 240 (339)
T ss_pred EEECCC
Confidence 999876
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.04 Score=45.16 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
|++++|.|.| -|-+|+++++.|.+.| ..|+++..+
T Consensus 21 l~g~~vaIqG-fGnVG~~~a~~L~~~G---~~vV~vsD~ 55 (217)
T cd05211 21 LEGLTVAVQG-LGNVGWGLAKKLAEEG---GKVLAVSDP 55 (217)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 4578999999 8999999999999999 656555444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.16 Score=42.67 Aligned_cols=116 Identities=21% Similarity=0.193 Sum_probs=65.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-CchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+-+|.|.||.|+||+.|.-.|. ....+.+..+.+-.. +....-..++..+.. ....+-++.++..++ +.|+|+
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~--V~g~~g~~~L~~al~---~advVv 101 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINTNSS--VVGFTGADGLENALK---GADVVV 101 (345)
T ss_pred cceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCCCCc--eeccCChhHHHHHhc---CCCEEE
Confidence 3579999999999999987665 443322222222211 111111111111111 122333445666666 999999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
-=||...-+.+ ..++.+.+|..-. ..+..++.+.-.+ .+.++|
T Consensus 102 IPAGVPRKPGM--TRDDLFn~NAgIv-~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 102 IPAGVPRKPGM--TRDDLFNINAGIV-KTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred ecCCCCCCCCC--cHHHhhhcchHHH-HHHHHHHHhhCccceeEeec
Confidence 99997654433 3467788886655 3777776664443 444554
|
|
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.086 Score=45.73 Aligned_cols=76 Identities=25% Similarity=0.205 Sum_probs=51.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+++|+|++|.+|..+++.+...| .+|+++.++++....+ ..++. . ...|..+.+..+.+.+.. .++|.|
T Consensus 143 ~~~vlI~g~~~~~g~~~~~la~~~g---~~v~~~~~~~~~~~~~-~~~g~--~-~~~~~~~~~~~~~~~~~~~~~~~d~v 215 (324)
T cd08244 143 GDVVLVTAAAGGLGSLLVQLAKAAG---ATVVGAAGGPAKTALV-RALGA--D-VAVDYTRPDWPDQVREALGGGGVTVV 215 (324)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHH-HHcCC--C-EEEecCCccHHHHHHHHcCCCCceEE
Confidence 4689999999999999999999999 8899988876554443 33322 2 223444443333333322 259999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
+++.+
T Consensus 216 l~~~g 220 (324)
T cd08244 216 LDGVG 220 (324)
T ss_pred EECCC
Confidence 99876
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.18 Score=46.30 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEE-----EeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFF-----DVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~-----~~D~~~~~~~~~~~~~~~~ 76 (300)
.+|||||.| .|.++-.+++.+.+.| +++++++..++...... ...+....+ .-+..|.+.+.++.++. +
T Consensus 3 ~~k~ili~~-~g~~~~~~~~~~~~~G---~~~v~~~~~~d~~~~~~-~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~-~ 76 (445)
T PRK08462 3 EIKRILIAN-RGEIALRAIRTIQEMG---KEAIAIYSTADKDALYL-KYADAKICIGGAKSSESYLNIPAIISAAEIF-E 76 (445)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHcC---CCEEEEechhhcCCchh-hhCCEEEEeCCCchhcccCCHHHHHHHHHHc-C
Confidence 468999999 8899999999999999 88888876544321111 111111111 11556666677777766 8
Q ss_pred CCEEEEccc
Q 022280 77 PDVVVNCAA 85 (300)
Q Consensus 77 ~d~vih~a~ 85 (300)
+|+|+-..+
T Consensus 77 ~D~i~pg~g 85 (445)
T PRK08462 77 ADAIFPGYG 85 (445)
T ss_pred CCEEEECCC
Confidence 999998865
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.03 Score=47.72 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=51.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEe-ecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV-DLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+++++|.| +|+.+++++-.|++.|. .+++++.|+.++..++.+.++.....+.. ++.+.+ .. + ..|.||
T Consensus 126 ~~~vlilG-AGGAarAv~~aL~~~g~--~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~---~~-~---~~dliI 195 (283)
T COG0169 126 GKRVLILG-AGGAARAVAFALAEAGA--KRITVVNRTRERAEELADLFGELGAAVEAAALADLE---GL-E---EADLLI 195 (283)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhhhcccccccccccccc---cc-c---ccCEEE
Confidence 57899999 78899999999999994 47999999988888777665432211111 122211 11 1 479999
Q ss_pred Eccccc
Q 022280 82 NCAALS 87 (300)
Q Consensus 82 h~a~~~ 87 (300)
|+-...
T Consensus 196 NaTp~G 201 (283)
T COG0169 196 NATPVG 201 (283)
T ss_pred ECCCCC
Confidence 985543
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.079 Score=44.13 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+|++|.|.|++|-.|+.+++.+.+..+ .++.+..-+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~--~~L~aa~~~ 36 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPD--LELVAAFDR 36 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCC--ceEEEEEec
Confidence 478999999999999999999998874 565554443
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.061 Score=48.03 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+|+|.|.| .|-||+.+++.|..-| .+|++.+|+..... .... .++.-..+++++++ ..|+|+
T Consensus 191 ~gktVGIvG-~G~IG~~vA~~l~~fG---~~V~~~dr~~~~~~-~~~~---------~g~~~~~~l~ell~---~aDvV~ 253 (385)
T PRK07574 191 EGMTVGIVG-AGRIGLAVLRRLKPFD---VKLHYTDRHRLPEE-VEQE---------LGLTYHVSFDSLVS---VCDVVT 253 (385)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEECCCCCchh-hHhh---------cCceecCCHHHHhh---cCCEEE
Confidence 578999999 7999999999999999 89999988753221 1111 11111234666766 899998
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+..
T Consensus 254 l~lP 257 (385)
T PRK07574 254 IHCP 257 (385)
T ss_pred EcCC
Confidence 8754
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.095 Score=46.49 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=48.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCce-eeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~ 79 (300)
+.+|||.|+ |.+|...++.+...| .+ |+++++++++.+.+ +.++. . ...|..+.+..+.+.+.. .++|+
T Consensus 177 g~~VlV~G~-g~vG~~a~~~ak~~G---~~~Vi~~~~~~~~~~~~-~~~Ga--~-~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 177 GDSVAVIGC-GGVGDAAIAGAALAG---ASKIIAVDIDDRKLEWA-REFGA--T-HTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHH-HHcCC--c-eEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 578999984 999999999999999 64 88887776554433 33332 2 223444433233333322 25899
Q ss_pred EEEccc
Q 022280 80 VVNCAA 85 (300)
Q Consensus 80 vih~a~ 85 (300)
||.+.|
T Consensus 249 vid~~g 254 (358)
T TIGR03451 249 VIDAVG 254 (358)
T ss_pred EEECCC
Confidence 999977
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.098 Score=43.89 Aligned_cols=71 Identities=27% Similarity=0.430 Sum_probs=44.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
-+||.|.| .|.||+.+++.|...+...+++..+.++.. ....+... ++. .+++++++. .++|+|+
T Consensus 2 ~~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~---------~~~--~~~l~~ll~--~~~DlVV 67 (267)
T PRK13301 2 THRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR---------VAL--LDGLPGLLA--WRPDLVV 67 (267)
T ss_pred ceEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc---------Ccc--cCCHHHHhh--cCCCEEE
Confidence 36899999 999999999998765432266666655532 33222211 111 122444433 2899999
Q ss_pred Eccccc
Q 022280 82 NCAALS 87 (300)
Q Consensus 82 h~a~~~ 87 (300)
-||+..
T Consensus 68 E~A~~~ 73 (267)
T PRK13301 68 EAAGQQ 73 (267)
T ss_pred ECCCHH
Confidence 999864
|
|
| >TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.19 Score=46.18 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEE-----EeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFF-----DVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~-----~~D~~~~~~~~~~~~~~~~ 76 (300)
|||||||.| .|.++..+++++.+.| ++|++++..++...... .+.+....+ .-+..|.+.+.++.... +
T Consensus 1 ~~kkili~g-~g~~~~~~~~aa~~lG---~~vv~~~~~~d~~a~~~-~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~-~ 74 (449)
T TIGR00514 1 MLDKILIAN-RGEIALRILRACKELG---IKTVAVHSTADRDALHV-LLADEAVCIGPAPSAKSYLNIPNIISAAEIT-G 74 (449)
T ss_pred CcceEEEeC-CCHHHHHHHHHHHHcC---CeEEEEEChhhhccccc-ccCCEEEEcCCCCchhchhCHHHHHHHHHHh-C
Confidence 378999997 8999999999999999 88888865432111000 011111101 11334444555555555 8
Q ss_pred CCEEEEccc
Q 022280 77 PDVVVNCAA 85 (300)
Q Consensus 77 ~d~vih~a~ 85 (300)
+|+|+-..+
T Consensus 75 id~I~pg~g 83 (449)
T TIGR00514 75 ADAIHPGYG 83 (449)
T ss_pred CCEEEeCCC
Confidence 999998754
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.052 Score=47.23 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=49.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCc--hhHHHHHHhcCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG--SGFDAVALKFGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~~~~~~~~d~v 80 (300)
+.+|||.|++|.+|..+++.+...| .+|+++.+++++.+.+ ..++. . ...|..+. +.+... . -+++|.|
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~~~~~~~~~-~~~g~--~-~v~~~~~~~~~~~~~~-~-~~~~d~v 217 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLG---YEVVASTGKADAADYL-KKLGA--K-EVIPREELQEESIKPL-E-KQRWAGA 217 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC---CeEEEEecCHHHHHHH-HHcCC--C-EEEcchhHHHHHHHhh-c-cCCcCEE
Confidence 3589999999999999999999999 8899888887665544 33322 2 12222222 112222 1 1368999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
+++.+
T Consensus 218 ld~~g 222 (326)
T cd08289 218 VDPVG 222 (326)
T ss_pred EECCc
Confidence 99875
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.054 Score=47.55 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|.|.| .|-||+.+++.|...| .+|++.+|+++... .... .. . ..+++++++ ..|+|+
T Consensus 149 ~gktvgIiG-~G~IG~~vA~~l~~~G---~~V~~~d~~~~~~~--~~~~--~~-----~---~~~l~ell~---~aDiV~ 209 (333)
T PRK13243 149 YGKTIGIIG-FGRIGQAVARRAKGFG---MRILYYSRTRKPEA--EKEL--GA-----E---YRPLEELLR---ESDFVS 209 (333)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCC---CEEEEECCCCChhh--HHHc--CC-----E---ecCHHHHHh---hCCEEE
Confidence 578999999 7999999999999999 89998888754321 1110 01 1 123566666 789998
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+..
T Consensus 210 l~lP 213 (333)
T PRK13243 210 LHVP 213 (333)
T ss_pred EeCC
Confidence 8864
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.053 Score=47.29 Aligned_cols=76 Identities=21% Similarity=0.179 Sum_probs=49.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~vi 81 (300)
+.+++|.|++|.+|+.+++.+...| .+|+++.++++....+ ..++. . ...|..+.+..+.+.... .++|.||
T Consensus 140 ~~~vlI~ga~g~ig~~~~~~a~~~g---~~v~~~~~~~~~~~~~-~~~g~--~-~v~~~~~~~~~~~~~~~~~~~vd~v~ 212 (329)
T cd08250 140 GETVLVTAAAGGTGQFAVQLAKLAG---CHVIGTCSSDEKAEFL-KSLGC--D-RPINYKTEDLGEVLKKEYPKGVDVVY 212 (329)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHH-HHcCC--c-eEEeCCCccHHHHHHHhcCCCCeEEE
Confidence 5789999999999999999999999 8898888876555444 33332 1 112322222112221111 3689999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
++.+
T Consensus 213 ~~~g 216 (329)
T cd08250 213 ESVG 216 (329)
T ss_pred ECCc
Confidence 9866
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.11 Score=45.52 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=45.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEee-cCCc---hhHHHHHHhcCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD-LKSG---SGFDAVALKFGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D-~~~~---~~~~~~~~~~~~~d 78 (300)
||+|||||+++.+ .+++.|.+.|.. ++|++.+.++...... ..+. ++..+ ..+. +.+.++.+.. ++|
T Consensus 1 ~~~vLv~g~~~~~--~~~~~l~~~~~g-~~vi~~d~~~~~~~~~---~~d~--~~~~p~~~~~~~~~~l~~~~~~~-~id 71 (326)
T PRK12767 1 MMNILVTSAGRRV--QLVKALKKSLLK-GRVIGADISELAPALY---FADK--FYVVPKVTDPNYIDRLLDICKKE-KID 71 (326)
T ss_pred CceEEEecCCccH--HHHHHHHHhccC-CEEEEECCCCcchhhH---hccC--cEecCCCCChhHHHHHHHHHHHh-CCC
Confidence 6899999997666 899999998421 8899988774332211 1111 12222 3333 2344555555 899
Q ss_pred EEEEcc
Q 022280 79 VVVNCA 84 (300)
Q Consensus 79 ~vih~a 84 (300)
+|+-+.
T Consensus 72 ~ii~~~ 77 (326)
T PRK12767 72 LLIPLI 77 (326)
T ss_pred EEEECC
Confidence 998763
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.085 Score=44.76 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=43.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceee-ecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-ATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~-~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
||+|.|.| .|.||+.+++.|.+.+.. +++. +.+++++....+.+..+. . -.+++++++. ++|+|+
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~~-~elv~v~d~~~~~a~~~a~~~~~--~-------~~~~~~ell~---~~DvVv 66 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRIN-AELYAFYDRNLEKAENLASKTGA--K-------ACLSIDELVE---DVDLVV 66 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCCC-eEEEEEECCCHHHHHHHHHhcCC--e-------eECCHHHHhc---CCCEEE
Confidence 46899999 699999999999876311 5644 445554444444332211 1 1123455553 899999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.|+.
T Consensus 67 i~a~ 70 (265)
T PRK13304 67 ECAS 70 (265)
T ss_pred EcCC
Confidence 9975
|
|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.054 Score=49.27 Aligned_cols=71 Identities=17% Similarity=0.042 Sum_probs=45.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|+|+|+ |..+..|++.+.+.| +.+.+...+........ ....++..|..|.+.+.++.++. ++|.||-.
T Consensus 1 ~kiliiG~-G~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~l~~~~~~~-~id~vi~~ 71 (423)
T TIGR00877 1 MKVLVIGN-GGREHALAWKLAQSP---LVKYVYVAPGNAGTARL----AKNKNVAISITDIEALVEFAKKK-KIDLAVIG 71 (423)
T ss_pred CEEEEECC-ChHHHHHHHHHHhCC---CccEEEEECCCHHHhhh----cccccccCCCCCHHHHHHHHHHh-CCCEEEEC
Confidence 68999995 555999999999987 43333322221111111 11123456888888888888876 89999854
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.18 Score=47.25 Aligned_cols=79 Identities=11% Similarity=0.187 Sum_probs=52.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch------hhhhhcCCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP------QLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
..+|+|.| .|.+|++++..|+..|...++.+.+++-.... .+....+...+.+-..|.+..+++.++++ +
T Consensus 129 ~akVlVlG-~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~---~ 204 (637)
T TIGR03693 129 NAKILAAG-SGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFE---P 204 (637)
T ss_pred cccEEEEe-cCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhc---C
Confidence 35899999 88899999999999996323333334443322 22233344556555566666667777776 8
Q ss_pred CCEEEEccc
Q 022280 77 PDVVVNCAA 85 (300)
Q Consensus 77 ~d~vih~a~ 85 (300)
.|.|++.+-
T Consensus 205 ~DiVi~vsD 213 (637)
T TIGR03693 205 ADWVLYVSD 213 (637)
T ss_pred CcEEEEECC
Confidence 899999864
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.047 Score=47.14 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=50.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+++|+|++|.+|..+++.+...| ++|+++.++++....+ ..++. . ...+..+.+....+.... .++|.+
T Consensus 140 ~~~vlv~g~~~~~g~~~~~~a~~~g---~~v~~~~~~~~~~~~~-~~~g~--~-~~~~~~~~~~~~~~~~~~~~~~~d~~ 212 (325)
T TIGR02824 140 GETVLIHGGASGIGTTAIQLAKAFG---ARVFTTAGSDEKCAAC-EALGA--D-IAINYREEDFVEVVKAETGGKGVDVI 212 (325)
T ss_pred CCEEEEEcCcchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHH-HHcCC--c-EEEecCchhHHHHHHHHcCCCCeEEE
Confidence 5689999999999999999999999 8898888875544433 33221 1 122333333333333222 259999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
+++++
T Consensus 213 i~~~~ 217 (325)
T TIGR02824 213 LDIVG 217 (325)
T ss_pred EECCc
Confidence 99876
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.16 Score=45.62 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
...+|+|.| .|.+|..+++.|+..|- -++++.+.+
T Consensus 37 ~~~~VlivG-~GGlG~~va~~La~~Gv--g~l~lvD~D 71 (390)
T PRK07411 37 KAASVLCIG-TGGLGSPLLLYLAAAGI--GRIGIVDFD 71 (390)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCC--CEEEEECCC
Confidence 357899999 78899999999999994 245555554
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.068 Score=47.13 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.6
Q ss_pred CeEEEEcCCccchHHHHHhhh-hcc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLS-EIE 27 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~-~~g 27 (300)
|+|.|.||||.+|+.+++.|. ++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~ 25 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD 25 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC
Confidence 579999999999999999999 555
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.17 Score=41.94 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=25.7
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+|||.| .|.+|..+++.|+..|- -++++.+.+
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gv--g~i~ivD~D 32 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGF--GQIHVIDMD 32 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence 588998 88999999999999995 345555554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.081 Score=50.05 Aligned_cols=70 Identities=21% Similarity=0.201 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++|+|+|+| +|.+|+.+++.+.+.| ++|++++.+++..... +.+ ..+.+|..|.+.+.++.+ ++|+|
T Consensus 20 ~~~k~IgIIG-gGqlg~mla~aA~~lG---~~Vi~ld~~~~apa~~---~AD--~~~v~~~~D~~~l~~~a~---~~dvI 87 (577)
T PLN02948 20 VSETVVGVLG-GGQLGRMLCQAASQMG---IKVKVLDPLEDCPASS---VAA--RHVVGSFDDRAAVREFAK---RCDVL 87 (577)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEeCCCCCchhh---hCc--eeeeCCCCCHHHHHHHHH---HCCEE
Confidence 4678999999 6699999999999999 8999998765422211 111 125577888877777766 57776
Q ss_pred EE
Q 022280 81 VN 82 (300)
Q Consensus 81 ih 82 (300)
..
T Consensus 88 t~ 89 (577)
T PLN02948 88 TV 89 (577)
T ss_pred EE
Confidence 43
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.12 Score=41.96 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=42.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeee-cCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA-THHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~-~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
++|.|.| .|.||..+++.+.+.-.+ .+.++ .+|+.++...+....+... .++ +.++.+ .+|.|+-
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~~-~e~v~v~D~~~ek~~~~~~~~~~~~------~s~---ide~~~---~~DlvVE 66 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRVD-FELVAVYDRDEEKAKELEASVGRRC------VSD---IDELIA---EVDLVVE 66 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCcc-eeEEEEecCCHHHHHHHHhhcCCCc------ccc---HHHHhh---ccceeee
Confidence 4688888 999999999998765222 55444 4555555555544332211 122 333443 7788888
Q ss_pred cccc
Q 022280 83 CAAL 86 (300)
Q Consensus 83 ~a~~ 86 (300)
||++
T Consensus 67 aAS~ 70 (255)
T COG1712 67 AASP 70 (255)
T ss_pred eCCH
Confidence 8764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 300 | ||||
| 2ydx_A | 315 | Crystal Structure Of Human S-Adenosylmethionine Syn | 2e-21 | ||
| 2ydy_A | 315 | Crystal Structure Of Human S-Adenosylmethionine Syn | 5e-20 | ||
| 2ggs_A | 273 | Crystal Structure Of Hypothetical Dtdp-4-Dehydrorha | 2e-14 | ||
| 1kbz_A | 299 | Crystal Structure Of Apo-dtdp-6-deoxy-l-lyxo-4-hexu | 7e-12 | ||
| 3sc6_A | 287 | 2.65 Angstrom Resolution Crystal Structure Of Dtdp- | 1e-11 | ||
| 1vl0_A | 292 | Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reduc | 1e-09 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 5e-06 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 6e-06 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 6e-06 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 1e-05 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 8e-05 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 2e-04 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 4e-04 |
| >pdb|2YDX|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase 2, Beta Subunit Length = 315 | Back alignment and structure |
|
| >pdb|2YDY|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase 2, Beta Subunit In Orthorhombic Crystal Form Length = 315 | Back alignment and structure |
|
| >pdb|2GGS|A Chain A, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose Reductase From Sulfolobus Tokodaii Length = 273 | Back alignment and structure |
|
| >pdb|1KBZ|A Chain A, Crystal Structure Of Apo-dtdp-6-deoxy-l-lyxo-4-hexulose Reductase (rmld) From Salmonella Enterica Serovar Typhimurium Length = 299 | Back alignment and structure |
|
| >pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus Anthracis Str. Ames In Complex With Nadp Length = 287 | Back alignment and structure |
|
| >pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase, Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum Atcc 824 At 2.05 A Resolution Length = 292 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 8e-39
Identities = 80/318 (25%), Positives = 138/318 (43%), Gaps = 44/318 (13%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
M+++ VLV G TG LG+ + + + + P+ V+
Sbjct: 1 MNRR-VLVTGATGLLGRAVHKEFQQ---NNWHAVGCGFRRARPKFE-----------QVN 45
Query: 61 LKSGSGFDAV--ALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
L +AV + QP V+V+CAA P V EN PD+A +NV + L+
Sbjct: 46 L---LDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDA--SGNLAKEAAA 100
Query: 119 KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
LI++S+D V++G Y+EED AP+N+YGK+K+ EK + E A+LR I+Y
Sbjct: 101 VGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILY 160
Query: 179 GPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQ 238
G + + +S D V + H + R P +V+DV + L + + D
Sbjct: 161 GE--VEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPS 217
Query: 239 MQLLLNVGGPDRVSRVQMAE-------VD------------RGVQSPADISMDITKLVQT 279
++ + G +++++ +MA + G Q P + +D +KL
Sbjct: 218 IKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL 277
Query: 280 LNIDPVTYKDGVKLTLAA 297
++ G+K +L
Sbjct: 278 GIGQRTPFRIGIKESLWP 295
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 3e-34
Identities = 73/299 (24%), Positives = 125/299 (41%), Gaps = 56/299 (18%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
R L+ G +G LG L + LSE + + + S LD L
Sbjct: 2 RTLITGASGQLGIELSRLLSE---RHEVIKVYNSSEIQGGYKLD------------LTDF 46
Query: 65 SGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ +K +PDV++N AA+ V + CE + + A IN + V + + ++ +
Sbjct: 47 PRLEDFIIKK-RPDVIINAAAMTDVDK-CEIEKEKAYKINAEA--VRHIVRAGKVIDSYI 102
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
+H+STD V++G K YKEED P+N YG SK+ E F + I+R+S I+ +
Sbjct: 103 VHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFA--LQDDSLIIRTSGIFRNKGF 160
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
++ L +G+ V F P+ R + IL L + ++
Sbjct: 161 --------PIYVYKTLKEGKTVFAF-KGYYSPISARKLASAILELLELRKTG------II 205
Query: 244 NVGGPDRVSR-------VQMAEVDRGVQS-----------PADISMDITKLVQTLNIDP 284
+V G +R+SR + + V+ P D S+D ++ + L+ D
Sbjct: 206 HVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDF 263
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-28
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 37/185 (20%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV--- 59
K+RV++ G G LG+ L Q L+ + FD
Sbjct: 5 KERVIITGANGQLGKQL------------------------QEELNPEEYDIYPFDKKLL 40
Query: 60 DLKSGSGFDAV--ALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
D+ + V ++ +P ++++CAA V + E + D A IN ++ +
Sbjct: 41 DI---TNISQVQQVVQEIRPHIIIHCAAYTKVDQ-AEKERDLAYVINAIG--ARNVAVAS 94
Query: 117 ENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSS 175
+ L+++STD V++G + Y E AP+N+YG SK A E+F+ E + + I+R+S
Sbjct: 95 QLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTS 154
Query: 176 IIYGP 180
+YG
Sbjct: 155 WLYGK 159
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-27
Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 37/183 (20%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV---DL 61
++L+ G G LG+ + Q L + DV D+
Sbjct: 14 KILITGANGQLGREI------------------------QKQLKGKNVEVIPTDVQDLDI 49
Query: 62 KSGSGFDAV--ALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
+ AV +P+VV+NCAA +V + CE D A IN L++ +
Sbjct: 50 ---TNVLAVNKFFNEKKPNVVINCAAHTAVDK-CEEQYDLAYKINAIG--PKNLAAAAYS 103
Query: 119 KENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSII 177
++ +STD V++G E DE+ P + YGK+K+ E F+ + I+R++ +
Sbjct: 104 VGAEIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPKYYIVRTAWL 163
Query: 178 YGP 180
YG
Sbjct: 164 YGD 166
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* Length = 299 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-26
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 28/180 (15%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
+L+ G TG +G L + L+ +A HS +
Sbjct: 2 NILLFGKTGQVGWELQRSLAP---VGNLIALDVHSKEFCGDFSNP--------------- 43
Query: 65 SGFDAV--ALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
V ++ +PDV+VN AA +V + E++P+ A +N S V ++
Sbjct: 44 ---KGVAETVRKLRPDVIVNAAAHTAVDK-AESEPELAQLLNATS--VEAIAKAANETGA 97
Query: 122 LLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
++H STD V+ G ++E D +P+NVYGK+K+A EK + + C I R+S +Y
Sbjct: 98 WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAG 157
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 7e-22
Identities = 60/323 (18%), Positives = 117/323 (36%), Gaps = 40/323 (12%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA-----THHSTPLPQLLLDALPHSFV 55
+ + +L+ GG G++G +L E V ++ + + +
Sbjct: 8 LENQTILITGGAGFVGSNLAFHFQE-NHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLI 66
Query: 56 FFDVDLKSGSGFDAVALK---FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWL 112
F ++ + + + L+ D + + AA+S + + M N + L N L
Sbjct: 67 GFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVS--DTTMLNQELVMKTNYQAFL-NLL 123
Query: 113 SSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF--A 170
K + I+ S+ VY K+ +P NVYG SK+ ++F+ ++
Sbjct: 124 EIARSKKAKV-IYASSAGVYGNTKAPNVVGKNESPENVYGFSKLCMDEFVLSHSNDNVQV 182
Query: 171 ILRSSIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILA 227
LR +YGP + S+ +Q + ++V+ F + R VY+ DV++ +
Sbjct: 183 GLRYFNVYGPREFYKEKTASMVLQLALGAM-AFKEVKLFEFGEQLRDFVYIEDVIQANVK 241
Query: 228 LTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDR---GVQSPADISM-----------DI 273
S + NVG S ++ + + G I I
Sbjct: 242 AMKAQKSG------VYNVGYSQARSYNEIVSILKEHLGDFKVTYIKNPYAFFQKHTQAHI 295
Query: 274 TKLVQTLNIDP-VTYKDGVKLTL 295
+ L+ P + G+K L
Sbjct: 296 EPTILDLDYTPLYDLESGIKDYL 318
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 3e-21
Identities = 49/316 (15%), Positives = 106/316 (33%), Gaps = 41/316 (12%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
+LV G +G +G L+ L+E GK +V A+ F +D+ +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGK-KNVIASDIVQR--------DTGGIKFITLDVSNRD 52
Query: 66 GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIH 125
D K+ D + + A + + E DP A +N+ + N L + +++ ++
Sbjct: 53 EIDRAVEKYS-IDAIFHLAGILSAK-GEKDPALAYKVNM-NGTYNILEAAKQHRVEKVVI 109
Query: 126 LSTDQVY--EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCS--NFAILRSSIIYG 179
ST V+ E K+ P ++G +K+AAE Y + + LR I
Sbjct: 110 PSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIIS 169
Query: 180 P-QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP-VYVRDVVK-IILALTNRWLSED 236
+ ++ + + + + P +Y+ D +K ++ +
Sbjct: 170 YKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEAD--RDK 227
Query: 237 KQMQLLLNVGGPDRVSRVQMAE----------VDRGVQSPADI------SMDITKLVQTL 280
++ NV + ++ ++ I S+D ++
Sbjct: 228 LVLRNGYNVTA-YTFTPSELYSKIKERIPEFEIEYKEDFRDKIAATWPESLDSSEASNEW 286
Query: 281 NIDP-VTYKDGVKLTL 295
+ +
Sbjct: 287 GFSIEYDLDRTIDDMI 302
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-18
Identities = 72/334 (21%), Positives = 125/334 (37%), Gaps = 51/334 (15%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-----ATHHSTPLPQLLLDALPHS-- 53
K L+ G G++G +LL+ L + V AT H L ++
Sbjct: 25 AQPKVWLITGVAGFIGSNLLETLLK-LD--QKVVGLDNFATGHQRNLDEVRSLVSEKQWS 81
Query: 54 -FVFFDVDLKSGSGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNW 111
F F D+++ D D V++ AAL SVPR DP ++ + N+ +N
Sbjct: 82 NFKFIQGDIRN---LDDCNNACAGVDYVLHQAALGSVPRSIN-DPITSNATNI-DGFLNM 136
Query: 112 LSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEI-APVNVYGKSKVAAEKF--IYEKCSN 168
L + + K + ++ Y K ED I P++ Y +K E + ++ +C
Sbjct: 137 LIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYG 196
Query: 169 F--AILRSSIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVK 223
F LR ++G Q + ++ +W S++ +G+ V D R Y+ + V+
Sbjct: 197 FSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMI-QGDDVYINGDGETSRDFCYIENTVQ 255
Query: 224 -IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV------DRGVQSPADISM----- 271
+LA T + + N+ R S Q+ + GV +
Sbjct: 256 ANLLAAT----AGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFRE 311
Query: 272 --------DITKLVQTLNIDP-VTYKDGVKLTLA 296
DI+K + L P GV L +
Sbjct: 312 GDVRHSLADISKAAKLLGYAPKYDVSAGVALAMP 345
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-18
Identities = 57/329 (17%), Positives = 112/329 (34%), Gaps = 55/329 (16%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATHHSTPLPQLLLDALPHSFVFFDV 59
M+ K +L++G G +G L Q L ++ G + V A+ ++ +S F V
Sbjct: 1 MNPK-ILIIGACGQIGTELTQKLRKLYG--TENVIASDIRKLNTDVV-----NSGPFEVV 52
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAA-LSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
+ + + + + + AA LS E +P A +N+ +SL + L+
Sbjct: 53 NALDFNQIEHLVEVH-KITDIYLMAALLSA--TAEKNPAFAWDLNM-NSLFHVLNLAKAK 108
Query: 119 KENLLIHLSTDQVY-EGVKSFYKEEDEI-APVNVYGKSKVAAEKFI--YEKCSN--FAIL 172
K + S+ V+ + I P VYG SK A E++ Y +
Sbjct: 109 KIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSI 168
Query: 173 RSSIIYGPQTISPVPKSLP--------IQWIDSVLSKGEKVEFFHD-ECRCP-VYVRDVV 222
R + + P + + +K E F E + P +Y+ D +
Sbjct: 169 RYPGLIS-------WSTPPGGGTTDYAVDIFYKAI-ADKKYECFLSSETKMPMMYMDDAI 220
Query: 223 KIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGV------------QSPADI- 269
+ + E ++ N+ E+ + + Q AD
Sbjct: 221 DATINIMK-APVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSW 279
Query: 270 --SMDITKLVQTLNIDP-VTYKDGVKLTL 295
S+D ++ + + + K +
Sbjct: 280 PASIDDSQAREDWDWKHTFDLESMTKDMI 308
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 2e-18
Identities = 52/274 (18%), Positives = 104/274 (37%), Gaps = 42/274 (15%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-----ATHHSTPLPQLLLDALPHSFVFFD 58
++V GG G++G H++ L E ++ ++ + + + +
Sbjct: 2 SLIVVTGGAGFIGSHVVDKL--SES--NEIVVIDNLSSGN--------EEFVNEAARLVK 49
Query: 59 VDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
DL + D + + V + AA R+ +PD NV ++ L + +
Sbjct: 50 ADLAA----DDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATY-RLLEAMRKA 104
Query: 119 KENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFI--YEKCSNF--AILR 173
+ ++ ST VY K E+ P+++YG SK+A E I Y + I R
Sbjct: 105 GVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYR 164
Query: 174 SSIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHD-EC-RCPVYVRDVVK-IILALT 229
+ + G T + I + E++E + E + +Y+ D V ++ L
Sbjct: 165 FANVIGRRSTHGVIY---DF--IMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLR 219
Query: 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGV 263
+ N+G D++ ++AE+
Sbjct: 220 GDERVN------IFNIGSEDQIKVKRIAEIVCEE 247
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 5e-18
Identities = 74/325 (22%), Positives = 123/325 (37%), Gaps = 59/325 (18%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-----ATHHSTPLPQLLLDALPHSFVFFDV 59
R++V GG G++G HL+ L E G Y+V ++ + + S
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVE-LG--YEVVVVDNLSSGR--------REFVNPSAELHVR 50
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
DLK D + DVV + AA R+ +P + NV ++ N L +
Sbjct: 51 DLK-----DYSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATF-NVLEWARQTG 104
Query: 120 ENLLIHLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCSNF--AILRS 174
++ S+ VY + EE+ P++VYG +K A E Y + +R
Sbjct: 105 VRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRY 164
Query: 175 SIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHD-EC-RCPVYVRDVVK-IILALTN 230
+ + GP + +I + +E D + +YVRD V+ + A
Sbjct: 165 ANVVGPRLRHGVIYD-----FIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWK- 218
Query: 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAEV-----------------DRGVQSPADIS--- 270
E L LNVG D V + +A++ G P D+
Sbjct: 219 -KFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMT 277
Query: 271 MDITKLVQTLNIDP-VTYKDGVKLT 294
+ +TKL++ P +T + VK T
Sbjct: 278 LAVTKLMKLTGWRPTMTSAEAVKKT 302
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 1e-17
Identities = 60/324 (18%), Positives = 109/324 (33%), Gaps = 44/324 (13%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDALPHSFVFFDV 59
+ + ++V GG G++G ++++ L++ +G D+ + + L L +
Sbjct: 44 IEGRMIIVTGGAGFIGSNIVKALND-KGI-TDILVVDNLKDGTKFVNLVDLNIADYMDKE 101
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
D +FG + + + A S E D M N S L E +
Sbjct: 102 DFLI---QIMAGEEFGDVEAIFHEGACS--STTEWDGKYMMDNNYQYSK-ELLHYCLERE 155
Query: 120 ENLLIHLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF----AILRS 174
++ S+ Y F + + P+NV+G SK ++++ + R
Sbjct: 156 IPF-LYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPEANSQIVGFRY 214
Query: 175 SIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFH--DEC-RCPVYVRDVVKIILALTN 230
+YGP + S+ + GE + F + R VYV DV + L
Sbjct: 215 FNVYGPREGHKGSMASVAFHLNTQLN-NGESPKLFEGSENFKRDFVYVGDVADVNLWFLE 273
Query: 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGVQSPADISM-----------------DI 273
+S + N+G S +A+ I D+
Sbjct: 274 NGVSG------IFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADL 327
Query: 274 TKLVQTLNIDP-VTYKDGVKLTLA 296
T L P T +GV +A
Sbjct: 328 TNLRAAGYDKPFKTVAEGVTEYMA 351
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 2e-17
Identities = 60/324 (18%), Positives = 116/324 (35%), Gaps = 61/324 (18%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFD 58
MS K + V GGTG+LGQ++++ + +G ++L + ++
Sbjct: 1 MSLK-IAVTGGTGFLGQYVVESIKN-DG--NTP-----------IILTRSIGNKAINDYE 45
Query: 59 VDLKSGSGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSFTE 117
+ + D + D VV+ AA S N N + E
Sbjct: 46 YRVSDYTLEDLINQLND-VDAVVHLAATRGSQG-----KISEFHDNE-ILTQNLYDACYE 98
Query: 118 NKENLLIHLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCSNF--AIL 172
N + +++ ST Y + + E++ P +YG SK+A E Y + L
Sbjct: 99 NNISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYSRKKGLCIKNL 158
Query: 173 RSSIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVK-IILAL 228
R + +YG + + + + + GE++ + R +Y +D K +I AL
Sbjct: 159 RFAHLYGFNEKNNYM---INR-FFRQAF-HGEQLTLHANSVAKREFLYAKDAAKSVIYAL 213
Query: 229 TNRWLSEDKQMQLLLNVGGPDRVSRVQMAE------------VDRGVQSPADI---SMDI 273
+S N+G D ++ ++A + + + I MD
Sbjct: 214 KQEKVSG------TFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDS 267
Query: 274 TKLVQTLNIDP-VTYKDGVKLTLA 296
+K + L+ + V+
Sbjct: 268 SKAKELLDFSTDYNFATAVEEIHL 291
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 3e-17
Identities = 69/327 (21%), Positives = 122/327 (37%), Gaps = 62/327 (18%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFF 57
K R+L+ GG G++G HL + L G +V LD L P
Sbjct: 5 TLKHRILITGGAGFIGGHLARALVA-SG--EEVTV-----------LDDLRVPPMIPPEG 50
Query: 58 DVDLKSGSGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
+ +V + A+ SVPR + P + NV S + L+ T
Sbjct: 51 TGKFLEKPVLELEERDLSDVRLVYHLASHKSVPRSFK-QPLDYLD-NVDSGR-HLLALCT 107
Query: 117 ENKENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEK--FIYEKCSNF---A 170
++ ST +VY + E+ ++P + Y SKV E +++ S
Sbjct: 108 SVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVG 167
Query: 171 ILRSSIIYGP-QTISP---VPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKI 224
I+R +YGP + P VP+ ++L ++ D + R Y+ DVV
Sbjct: 168 IVRFFNVYGPGE--RPDALVPR-----LCANLL-TRNELPVEGDGEQRRDFTYITDVVDK 219
Query: 225 ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGVQSPADISM------------- 271
++AL NR L ++N G +S + + + A+++
Sbjct: 220 LVALANRPLPS------VVNFGSGQSLSVNDVIRILQATSPAAEVARKQPRPNEITEFRA 273
Query: 272 DITKLVQTLNIDP--VTYKDGVKLTLA 296
D + + + ++G++LTL
Sbjct: 274 DTALQTRQIGERSGGIGIEEGIRLTLE 300
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 3e-16
Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 31/192 (16%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
M+ KR+LV G G LG+ + + L+ + S LD + D
Sbjct: 1 MAMKRLLVTGAAGQLGRVMRERLAP-MA--EILRLADLSP------LDPAGPNEECVQCD 51
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
L +AV D +V+ +SV + + + N+ N + + +
Sbjct: 52 LAD---ANAVNAMVAGCDGIVHLGGISVEK----PFEQILQGNIIGLY-NLYEAARAHGQ 103
Query: 121 NLLIHLSTDQVY--EGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFA-------- 170
++ S++ + P +YG SK E +
Sbjct: 104 PRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENL----ARMYFDKFGQETA 159
Query: 171 ILRSSIIYGPQT 182
++R
Sbjct: 160 LVRIGSCTPEPN 171
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 3e-16
Identities = 68/335 (20%), Positives = 127/335 (37%), Gaps = 53/335 (15%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-----ATHHSTPLPQLLLDALPHS-- 53
S K L+ G G++G +LL+ L + V +T H L ++
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEKLLK-LN--QVVIGLDNFSTGHQYNLDEVKTLVSTEQWS 79
Query: 54 -FVFFDVDLKSGSGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNW 111
F F + D++ D V++ AAL SVPR + P + + N+ L N
Sbjct: 80 RFCFIEGDIRD---LTTCEQVMKGVDHVLHQAALGSVPRSIVD-PITTNATNITGFL-NI 134
Query: 112 LSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEI-APVNVYGKSKVAAEKF--IYEKCSN 168
L + + + ++ Y + K E+ I P++ Y +K E + +Y +
Sbjct: 135 LHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYG 194
Query: 169 F--AILRSSIIYGP--QTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVV 222
F LR ++G +P W ++L KG+ V D R Y+ +V+
Sbjct: 195 FKTIGLRYFNVFGRRQDPNGAYAAVIPK-WTAAML-KGDDVYINGDGETSRDFCYIDNVI 252
Query: 223 K-IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV------DRGVQSPADISM---- 271
+ IL+ + ++D + NV DR + +++ I
Sbjct: 253 QMNILSALAKDSAKDN----IYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFR 308
Query: 272 ---------DITKLVQTLNIDP-VTYKDGVKLTLA 296
D+TK + L P + ++G++L++
Sbjct: 309 SGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMP 343
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 8e-16
Identities = 57/353 (16%), Positives = 101/353 (28%), Gaps = 87/353 (24%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--------PH 52
++ V+VVGG G++G +L++ L +E V ++D L P
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRL--LELGVNQV-----------HVVDNLLSAEKINVPD 76
Query: 53 S--FVFFDVDLKSGSGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLV 109
F + + +A + D V + A DP + N ++L
Sbjct: 77 HPAVRFSETSITD---DALLASLQDEYDYVFHLATYHGNQSSIH-DPLADHENNTLTTL- 131
Query: 110 NWL-SSFTENKENLLIHLSTDQVYEGVKSFYKEEDE-------IAPVNVYGKSKVAAEK- 160
+ +++ + + E + Y SK+ E
Sbjct: 132 KLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFY 191
Query: 161 -FIYEKCSNF--AILRSSIIYGP-----------QTISPVPKSLPIQWIDSVLSKGEKVE 206
Y K R +YGP + P +I L KG +
Sbjct: 192 SVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPT-FIYKAL-KGMPLP 249
Query: 207 FFHD--ECRCPVYVRDVVK-IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV---- 259
+ R ++V DV +I + + N+ S +A
Sbjct: 250 LENGGVATRDFIFVEDVANGLIACAADGTPGG------VYNIASGKETSIADLATKINEI 303
Query: 260 -----------DRGVQSPADISM----DITKLVQTLNIDP-VTYKDGVKLTLA 296
R P D S K + L V+ DG++ T+
Sbjct: 304 TGNNTELDRLPKR----PWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIE 352
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 9e-16
Identities = 56/312 (17%), Positives = 104/312 (33%), Gaps = 49/312 (15%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
MS ++L+ G G LG L + L+ +G ++V S +P D
Sbjct: 1 MSLSKILIAG-CGDLGLELARRLTA-QG--HEVTGLRRSA-------QPMPAGVQTLIAD 49
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+ ++ +P+++V C A S E + V L N LS+
Sbjct: 50 VTRPDTLASIVH--LRPEILVYCVAAS-----EYSDEHYRLSYV-EGLRNTLSALEGAPL 101
Query: 121 NLLIHLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
+ +S+ VY + V+ + E+ + GK + AE + ILR S IYG
Sbjct: 102 QHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEAEALLAAYS--STILRFSGIYG 159
Query: 180 PQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQM 239
P + + ++ + + ++ D I L +
Sbjct: 160 PGRLRMIR-----------QAQTPEQWPARNAWTNRIHRDDGAAFIAYLIQQRS--HAVP 206
Query: 240 QLLLNVGGPDRVSR---VQMAEVDRGVQSPADIS--------MDITKLVQTLNIDPV--T 286
+ L V + ++ +G+ PA + + +L+ +
Sbjct: 207 ERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATPPVQGNKKLSNARLLA-SGYQLIYPD 265
Query: 287 YKDGVKLTLAAE 298
Y G LAA
Sbjct: 266 YVSGYGALLAAM 277
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 9e-16
Identities = 40/241 (16%), Positives = 78/241 (32%), Gaps = 25/241 (10%)
Query: 5 RVLVVGGTGYLGQHLLQGLSE---IEGKPYD--VAATHHSTPLPQLLLDALPHSFVFFDV 59
+ ++G G +G+ L Q L + + GKP + P +
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAP----AGFSGAVDARAA 71
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWL-----SS 114
DL + + + +PDV+ + AA+ E D D IN+ ++
Sbjct: 72 DLSAPGEAEKLV--EARPDVIFHLAAIVSGE-AELDFDKGYRINL-DGTRYLFDAIRIAN 127
Query: 115 FTENKENLLIHLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCS--NF 169
+ + ++ S+ V+ + +E P+ YG K E + Y + +
Sbjct: 128 GKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDG 187
Query: 170 AILR-SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP-VYVRDVVKIILA 227
+R +I P + + L E V + R R V ++
Sbjct: 188 IGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIH 247
Query: 228 L 228
Sbjct: 248 G 248
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-15
Identities = 31/251 (12%), Positives = 73/251 (29%), Gaps = 50/251 (19%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
+ + V+G TG LG H + + G +D+ H + Q L + +
Sbjct: 11 GAHVKYAVLGATGLLGHHAARAIRA-AG--HDLVLIHRPSSQIQRLAYL--------EPE 59
Query: 61 LKSGSGFDAVALK--FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
+ D L+ D V+ A ++ + T
Sbjct: 60 CRVAEMLDHAGLERALRGLDGVIFSAG--YYPSRPRRWQEEVASALGQ---------TNP 108
Query: 119 ------KENL--LIHLSTDQVYEGVKSFYKEEDEIAP-------VNVYGKSKVAAEKFIY 163
+ + ++++ + E + Y K A ++
Sbjct: 109 FYAACLQARVPRILYVGSAYAM-PRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAR 167
Query: 164 EKCS---NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220
E+ I ++ G I P + I ++ + ++ + R + +
Sbjct: 168 EQARNGLPVVIGIPGMVLGELDIGPTTGRV----ITAIGNG--EMTHYVAGQRNVIDAAE 221
Query: 221 VVK-IILALTN 230
+ +++AL
Sbjct: 222 AGRGLLMALER 232
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 62/319 (19%), Positives = 107/319 (33%), Gaps = 44/319 (13%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDALPHSFVFFDVDLKSG 64
++V GG G++G ++++ L++ +G D+ + + L L + D
Sbjct: 2 IIVTGGAGFIGSNIVKALND-KGI-TDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLI- 58
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+FG + + + A S E D M N S L E + +
Sbjct: 59 --QIMAGEEFGDVEAIFHEGACS--STTEWDGKYMMDNNYQYSK-ELLHYCLEREIPF-L 112
Query: 125 HLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKC--SNFAILRSSIIYG 179
+ S+ Y F + + P+NVYG SK ++++ S R +YG
Sbjct: 113 YASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYG 172
Query: 180 P-QTISPVPKSLPIQWIDSVLSKGEKVEFFH--DEC-RCPVYVRDVVKIILALTNRWLSE 235
P + S+ + GE + F + R VYV DV + L +S
Sbjct: 173 PREGHKGSMASVAFHLNTQLN-NGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSG 231
Query: 236 DKQMQLLLNVGGPDRVSRVQMAEVDRGVQSPADISM-----------------DITKLVQ 278
+ N+G S +A+ I D+T L
Sbjct: 232 ------IFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRA 285
Query: 279 TLNIDP-VTYKDGVKLTLA 296
P T +GV +A
Sbjct: 286 AGYDKPFKTVAEGVTEYMA 304
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 4e-14
Identities = 56/330 (16%), Positives = 109/330 (33%), Gaps = 75/330 (22%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-----ATHHSTPLPQLLLDALPH--SFVF 56
K+V + G G +G H+ + L E G V AT + L + F
Sbjct: 22 KKVFITGICGQIGSHIAELLLE-RG--DKVVGIDNFATGR--------REHLKDHPNLTF 70
Query: 57 FDVDLKSGSGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSF 115
+ + + + + QPD VV+ AA P D + N N + +
Sbjct: 71 VEGSIADHALVNQLIGDL-QPDAVVHTAASYKDPD----DWYNDTLTNCVGGS-NVVQAA 124
Query: 116 TENKENLLIHLSTDQVY--EGVKSFYKEEDEIAPVN-VYGKSKVAAEKFIYEKCSNFAIL 172
+N ++ T Y + ++ + + P N Y SK A E ++ +F
Sbjct: 125 KKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSGLDFVTF 184
Query: 173 RSSIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVE-------FFHDECRCPVYVRDVVK- 223
R + + GP P+P + + +G+K F V+V+D+ +
Sbjct: 185 RLANVVGPRNVSGPLPI-----FFQRLS-EGKKCFVTKARRDF--------VFVKDLARA 230
Query: 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDR---GVQSPADISM--------- 271
+ A+ D + V+ ++ + + S + +
Sbjct: 231 TVRAV-------DGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAP 283
Query: 272 ----DITKLVQTLNIDP-VTYKDGVKLTLA 296
D ++ +Q K+ V +A
Sbjct: 284 SILLDPSRTIQDFGKIEFTPLKETVAAAVA 313
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 1e-13
Identities = 74/285 (25%), Positives = 113/285 (39%), Gaps = 54/285 (18%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-----ATHHSTPLPQLLLDALPHSFVFFDV 59
RVLV GG G++G H+++ L G +VA AT + +P FF V
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLA-RG--LEVAVLDNLATGK--------RENVPKGVPFFRV 50
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
DL+ G + + +P V + AA SV E DP +N+ L N L + +
Sbjct: 51 DLRDKEGVERA-FREFRPTHVSHQAAQASVKVSVE-DPVLDFEVNLLGGL-NLLEACRQY 107
Query: 119 KENLLIHLSTDQ-VY----EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCS--NF 169
L+ ST +Y EG ++ +E P + Y SK A E ++ Y + +
Sbjct: 108 GVEKLVFASTGGAIYGEVPEGERA--EETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKW 165
Query: 170 AILRSSIIYGP-QTISPVPKS--LPIQWIDSVLSKGEKVEFFHD------EC-RCPVYVR 219
LR +YGP Q P ++ + I + KG V + C R VYV
Sbjct: 166 VSLRYGNVYGPRQ--DPHGEAGVVAI--FAERVLKGLPVTLYARKTPGDEGCVRDYVYVG 221
Query: 220 DVVK-IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGV 263
DV + LAL L + NVG + + ++
Sbjct: 222 DVAEAHALAL--FSLEG------IYNVGTGEGHTTREVLMAVAEA 258
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 25/184 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDALPHSFVFFDVDLK 62
R+LV G G +G + L ++V + +A DL
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGT-LA--HEVRLSDIVDLG----AAEAHEE---IVACDLA 52
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
AV D +++ +SV R + + N+ + N + +
Sbjct: 53 D---AQAVHDLVKDCDGIIHLGGVSVER----PWNDILQANIIGAY-NLYEAARNLGKPR 104
Query: 123 LIHLSTDQVYEGVKSFYK--EEDEIAPVNVYGKSKVAAEKFI--YEKCSNF--AILRSSI 176
++ S++ + E P ++YG SK E Y + +R
Sbjct: 105 IVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGS 164
Query: 177 IYGP 180
+
Sbjct: 165 CFPK 168
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-11
Identities = 60/330 (18%), Positives = 114/330 (34%), Gaps = 58/330 (17%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA--THHSTPLPQLLLDALPHSFVFFD 58
++ + G G++ H+ + L EG + V A + + + + F D
Sbjct: 27 SENLKISITGAGGFIASHIARRLKH-EG--HYVIASDWKKNEHMTEDMFC---DEFHLVD 80
Query: 59 VDLKSGSGFDAVALKFGQPDVVVNCAA-LSVPRVCENDPDSAMSINVPSSLVNWLSSFTE 117
+ + + D V N AA + +++ M N S N + +
Sbjct: 81 LRVM-----ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISF-NMIEAARI 134
Query: 118 NKENLLIHLSTDQVY-----EGVKSFYKEEDEIAPVN---VYGKSKVAAEK--FIYEKCS 167
N + S+ +Y + +E + P +G K+A E+ Y K
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF 194
Query: 168 NF--AILRSSIIYGPQTI-----SPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYV 218
I R IYGP P + + ++ E + D + R ++
Sbjct: 195 GIECRIGRFHNIYGPFGTWKGGREKAPAAF----CRKAQTSTDRFEMWGDGLQTRSFTFI 250
Query: 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-VDRGVQSPADI-------- 269
+ V+ +L LT E +N+G + VS +MAE V + I
Sbjct: 251 DECVEGVLRLTKSDFRE------PVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEG 304
Query: 270 ----SMDITKLVQTLNIDP-VTYKDGVKLT 294
+ D + + L P + K+G+++T
Sbjct: 305 VRGRNSDNNLIKEKLGWAPNMRLKEGLRIT 334
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 5e-11
Identities = 56/271 (20%), Positives = 95/271 (35%), Gaps = 43/271 (15%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-----ATHHSTPLPQLLLDALPHS--FVFF 57
R+L+ GG G LG +L++ +G +++ AT + LP
Sbjct: 22 RILITGGAGCLGSNLIEHWLP-QG--HEILVIDNFATGK--------REVLPPVAGLSVI 70
Query: 58 DVDLKSGSGFDAVALKFGQPDVVVNCAAL-SVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
+ + + F +P VV+ AA P D + NV S+ N + +
Sbjct: 71 EGSVTDAGLLERAFDSF-KPTHVVHSAAAYKDPD----DWAEDAATNVQGSI-NVAKAAS 124
Query: 117 ENKENLLIHLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSS 175
+ L++ T Y + AP YG SK A E F+ LR +
Sbjct: 125 KAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLMMSDVPVVSLRLA 184
Query: 176 IIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC-RCPVYVRDVVK-IILALTNRW 232
+ GP I P+P L G+K F + R + + D + L+L
Sbjct: 185 NVTGPRLAIGPIPTFY------KRLKAGQKC--FCSDTVRDFLDMSDFLAIADLSLQEGR 236
Query: 233 LSEDKQMQLLLNVGGPDRVSRVQMAEVDRGV 263
+ + NV + S ++ +V
Sbjct: 237 PTG------VFNVSTGEGHSIKEVFDVVLDY 261
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 5e-11
Identities = 41/259 (15%), Positives = 85/259 (32%), Gaps = 55/259 (21%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
+++ G G++G++L L+ + + F+V ++
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTD--HHI-----------------------FEVHRQTK 36
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ + + D +V+ A ++ P NV S L + L T N + I
Sbjct: 37 --EEELESALLKADFIVHLAGVNRPE----HDKEFSLGNV-SYLDHVLDILTRNTKKPAI 89
Query: 125 HLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCSN--FAILRSSIIYGP 180
LS+ N YG+SK+ E+ + Y + I R ++G
Sbjct: 90 LLSSSIQAT-------------QDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGK 136
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC-RCPVYVRDVVKIILALTNRWLSEDKQM 239
P S+ + + + E+++ YV D+V I
Sbjct: 137 WC-KPNYNSVIATFCYKIA-RNEEIQVNDRNVELTLNYVDDIVAEIKRA---IEGTPTIE 191
Query: 240 QLLLNVGGPDRVSRVQMAE 258
+ V +V+ ++ +
Sbjct: 192 NGVPTVPNVFKVTLGEIVD 210
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 45/220 (20%), Positives = 65/220 (29%), Gaps = 45/220 (20%)
Query: 4 KRVLVVGGTGYLGQH-----------------LLQGLSEIEGKPYDVAATHHSTPLPQLL 46
RV+V+GG GY G L++ L + + +
Sbjct: 12 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 71
Query: 47 LDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALS-VPRVCENDPDSAM---SI 102
S + D+ F +PD VV+ P D A+
Sbjct: 72 KALTGKSIELYVGDICDFEFLAESFKSF-EPDSVVHFGEQRSAPYSMI-DRSRAVYTQHN 129
Query: 103 NVPSSLVNWLSSFTENKENL-LIHLSTDQVYEGVKSFYKEEDEI---------------A 146
NV +L N L + E E L+ L T Y G + EE I
Sbjct: 130 NVIGTL-NVLFAIKEFGEECHLVKLGTMGEY-GTPNIDIEEGYITITHNGRTDTLPYPKQ 187
Query: 147 PVNVYGKSKVAAEKFIYEKCSN----FAILRSSIIYGPQT 182
+ Y SKV I C L ++YG +T
Sbjct: 188 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT 227
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 4e-09
Identities = 60/350 (17%), Positives = 118/350 (33%), Gaps = 70/350 (20%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH-----SFV 55
M K+VL++G G++G HL + + + T + D L
Sbjct: 22 MKAKKVLILGVNGFIGHHLSKRI---------LETTDWEVFGMDMQTDRLGDLVKHERMH 72
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
FF+ D+ + V + DV++ A++ P P ++ ++L + S
Sbjct: 73 FFEGDIT--INKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANL-PIVRSA 129
Query: 116 TENKENLLIHLSTDQVY-EGVKSFYKEEDE---IAPVN----VYGKSKVAAEKFIY---E 164
+ ++L+ ST +VY + + P+N +Y SK ++ I+
Sbjct: 130 VKYGKHLV-FPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGM 188
Query: 165 KCSNFAILRSSIIYGPQTISPVPKSLPI-----QWIDSVLSKGEKVEFFHD--ECRCPVY 217
+ NF + R GP S Q++ ++ +GE + + R Y
Sbjct: 189 EGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIV-RGENISLVDGGSQKRAFTY 247
Query: 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR-VSRVQMAE--------VDRGVQSPAD 268
V D + ++ + S + N+G P+ S ++A S
Sbjct: 248 VDDGISALMKIIEN--SNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKR 305
Query: 269 ISM---------------------DITKLVQTLNIDP-VTYKDGVKLTLA 296
+ + I +Q L P T+ D ++
Sbjct: 306 VKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFE 355
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 2e-08
Identities = 52/312 (16%), Positives = 91/312 (29%), Gaps = 44/312 (14%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSE--IEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL 61
L+VG TG +G L + L G P+ V P D + D+
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARR-TRPAWHEDN---PINYVQCDI 57
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
S D K V + ++ + N N L + N N
Sbjct: 58 ---SDPDDSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSK-MFRNVLDAVIPNCPN 111
Query: 122 L--LIHLSTDQVYEGVKSFYKEE-------DEIAPVNVYGKSKVAAEKFIYEKCS----- 167
L + + + Y G Y + E P Y E + E+
Sbjct: 112 LKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKEGL 171
Query: 168 NFAILRSSIIYGPQTISPVPKSLPIQWIDSVL-SKGEKVEFFHDECRCPVYVRDVVKIIL 226
+++ R I+G S + + ++ +G+ + F + Y ++
Sbjct: 172 TWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLI 231
Query: 227 ALTNRWLSEDKQ-MQLLLNVGGPDRVSRVQMAEVDRGVQSPADISMDITKLVQTLNIDPV 285
A + W + D NV D +V L + ++
Sbjct: 232 AEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKV----------------LAEQFGVECG 275
Query: 286 TYKDGVKLTLAA 297
Y++GV L L
Sbjct: 276 EYEEGVDLKLQD 287
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 45/176 (25%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGL------SEI------EGKPYDVAATHHSTPLPQLLLD 48
+ + +L+ GGTG G+ ++ + +I E K ++A + +
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRM------ 72
Query: 49 ALPHSFVFFDV-DLKSGSGFDAVALKFGQPDVVVNCAALS-VPRVCENDPDSAMSINVPS 106
F DV D + + D+ ++ AAL VP + E +P + N+
Sbjct: 73 ----RFFIGDVRD------LERLNYALEGVDICIHAAALKHVP-IAEYNPLECIKTNIMG 121
Query: 107 SLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFI 162
+ N +++ +N + +I LSTD K+ P+N+YG +K+ ++K
Sbjct: 122 A-SNVINACLKNAISQVIALSTD------KAAN-------PINLYGATKLCSDKLF 163
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 9e-08
Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 27/182 (14%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-----ATHHSTPLPQLLLDALPHSFVFFD 58
+L+ GG GY+G H ++ L + EG V T H DA+ F++
Sbjct: 2 NSILICGGAGYIGSHAVKKLVD-EG--LSVVVVDNLQTGHE--------DAITEGAKFYN 50
Query: 59 VDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCE--NDPDSAMSINVPSSLVNWLSSFT 116
DL+ + V + V++ AA S+ V P + NV +L L
Sbjct: 51 GDLRDKAFLRDV-FTQENIEAVMHFAADSL--VGVSMEKPLQYYNNNVYGAL-CLLEVMD 106
Query: 117 ENKENLLIHLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCS--NFAI 171
E K + I ST Y E EE P N YG++K+A EK + Y + S + I
Sbjct: 107 EFKVDKFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKI 166
Query: 172 LR 173
R
Sbjct: 167 FR 168
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 34/233 (14%), Positives = 61/233 (26%), Gaps = 34/233 (14%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFV-FFDV 59
M K V ++G +G G+ LL+ + E + + V F
Sbjct: 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK- 74
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
D A F DV C + + + +
Sbjct: 75 -------LDDYASAFQGHDVGFCCLGTTRGKAGAEGFV-RVDRDYVLKSAELAK---AGG 123
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYE-KCSNFAILRSSIIY 178
LS+ + Y + K E + E K +++ R ++
Sbjct: 124 CKHFNLLSSKGADKSSNFL------------YLQVKGEVEAKVEELKFDRYSVFRPGVLL 171
Query: 179 GPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 231
+ S + L ++ L V V VV+ +L R
Sbjct: 172 CDRQESRPGEWL-VRKFFGSLPDSWASGH-------SVPVVTVVRAMLNNVVR 216
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 30/237 (12%), Positives = 63/237 (26%), Gaps = 37/237 (15%)
Query: 1 MSK-KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDALPHSFVFFD 58
M K K+++++G +G++G LL G ++V A H +
Sbjct: 1 MEKVKKIVLIGASGFVGSALLNEALN-RG--FEVTAVVRHPEKIK-----IENEHLKVKK 52
Query: 59 VDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
D+ S D V D V++ D + + + + +
Sbjct: 53 ADVSS---LDEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTI-------IDGVKKA 102
Query: 119 KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS----NFAILRS 174
N + + + P N+ K E ++ ++
Sbjct: 103 GVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSP 162
Query: 175 SIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK-IILALTN 230
+ P + G+ + V D +I L +
Sbjct: 163 AADMRPGVRTG------------RYRLGKDDMIVDIVGNSHISVEDYAAAMIDELEH 207
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-07
Identities = 45/270 (16%), Positives = 79/270 (29%), Gaps = 58/270 (21%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT----HHSTPLPQLLLDALPHSFVFF 57
VLV G G++ H+++ L E Y V T L + P F
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLE---HGYKVRGTARSASKLANLQKRWDAKYPGRFETA 66
Query: 58 DV-DLKSGSGFDAVALKFGQPDVVVNCA-------------------ALSVPRVCENDPD 97
V D+ +D +K V + A L+ R P
Sbjct: 67 VVEDMLKQGAYDE-VIK--GAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPS 123
Query: 98 --------SAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149
S +S +P V + E N + + K+ + + + +
Sbjct: 124 VKRFVLTSSTVSALIPKPNVEGIY-LDEKSWN-------LESIDKAKTLPESDPQ-KSLW 174
Query: 150 VYGKSKVAAEK----FIYEKCSNFAILRSSI----IYGPQTISPVPKSLPIQWIDSVLSK 201
VY SK AE F+ E +F + +++ G W+ S+ +
Sbjct: 175 VYAASKTEAELAAWKFMDENKPHFTL--NAVLPNYTIGTIFDPETQSGSTSGWMMSLFNG 232
Query: 202 GEKVEFFHDECRCPVYVRDVVKI-ILALTN 230
+ V D+ + + L
Sbjct: 233 EVSPALALMPPQYYVSAVDIGLLHLGCLVL 262
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 2e-06
Identities = 44/263 (16%), Positives = 84/263 (31%), Gaps = 64/263 (24%)
Query: 29 KPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSV 88
Y+V+ L Q LL+ P V +D GSG K V LS
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVL--IDGVLGSG------K----TWVALDVCLSY 174
Query: 89 PRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148
C+ D + WL+ N ++ + +Y+ ++ D + +
Sbjct: 175 KVQCKMDFK-----------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 149 NVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF 208
K ++ + + + + P L + + +V + + F
Sbjct: 224 ----KLRIHSIQ---AELRRLLKSK-----------PYENCLLV--LLNVQNA-KAWNAF 262
Query: 209 HDECRCPVYVRD-----------VVKIILALTNRWLSEDKQMQLLLNVGG--PDRVSRVQ 255
+ C+ + R I L + L+ D+ LLL P + R
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-- 320
Query: 256 MAEVDRGVQSPADISMDITKLVQ 278
EV +P +S+ I + ++
Sbjct: 321 --EVLTT--NPRRLSI-IAESIR 338
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 60/320 (18%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+L G GY + L + L+ +G + + T + + + + + + +
Sbjct: 5 TGTLLSFGH-GYTARVLSRALAP-QG--WRIIGTSRNPDQMEAIRASGAEPLL-WPGEEP 59
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S D V ++ +S DP V ++L + +++
Sbjct: 60 S---LDGV-------THLL----ISTAPDSGGDP-------VLAALGDQIAARAAQFRW- 97
Query: 123 LIHLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEK-FIYEKCSNFAILRSSIIYGP 180
+ +LST VY + ++ E + P G+ +V AE+ + + R + IYGP
Sbjct: 98 VGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAVPNLPLHVFRLAGIYGP 157
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW-------L 233
+ G + + ++V D+ +++ A R +
Sbjct: 158 GR----------GPFSKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAASMARPDPGAVYNV 207
Query: 234 SEDKQMQL---------LLNVGGPDRVSRVQMAEVDRGVQSPADIS--MDITKLVQTLNI 282
+D+ + L + P V + A++ +S + + ++ + L +
Sbjct: 208 CDDEPVPPQDVIAYAAELQGLPLPPAVDFDK-ADLTPMARSFYSENKRVRNDRIKEELGV 266
Query: 283 DPV--TYKDGVKLTLAAEAT 300
Y+ G++ A T
Sbjct: 267 RLKYPNYRVGLEALQADAET 286
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 4e-06
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
S+ R+L++G TGY+G+H+ + ++ ST L SF +
Sbjct: 2 GSRSRILLIGATGYIGRHVAKAS--LDLGHPTFLLVRESTASSNSEKAQLLESFKASGAN 59
Query: 61 LKSGSGFDAVALK--FGQPDVVVNCAA 85
+ GS D +L DVV++
Sbjct: 60 IVHGSIDDHASLVEAVKNVDVVISTVG 86
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-06
Identities = 35/235 (14%), Positives = 65/235 (27%), Gaps = 46/235 (19%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
+ KRVL+ G TG G+HLL + E V A LD
Sbjct: 3 STPKRVLLAGATGLTGEHLLDRILS-EPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQ 61
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF-TENK 119
L D C L + V L + E
Sbjct: 62 LDGS------------IDTAFCC--LGTTI--KEAGSEEAFRAVDFDLPLAVGKRALEMG 105
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF---AILRSSI 176
+ +S F Y + K E+ + + + I R S+
Sbjct: 106 ARHYLVVSALGADAKSSIF------------YNRVKGELEQAL--QEQGWPQLTIARPSL 151
Query: 177 IYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 231
++GP+ + + + + +++ ++ + D+ + + L
Sbjct: 152 LFGPRE-----EFRLAEILAAPIARILPGKYH------GIEACDLARALWRLALE 195
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 7e-06
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLDALPHSFV-FFDV 59
K RVL+ G TG++GQ + + +P + A P + AL
Sbjct: 9 PKGRVLIAGATGFIGQFVATASLD-AHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYG 67
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAA 85
+ + LK + D+VV+
Sbjct: 68 LINEQEAMEK-ILKEHEIDIVVSTVG 92
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 62/267 (23%), Positives = 89/267 (33%), Gaps = 66/267 (24%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ---LLLDALPHS---FVF 56
K RV V GGTG+LG +++ L E G Y V T + P + L LP + F
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLE-NG--YSVNTTIRADPERKRDVSFLTNLPGASEKLHF 57
Query: 57 FDVDLKSGSGFDA----------VA--LKFGQPD---VVVNCA---ALSVPRVCENDPD- 97
F+ DL + F A A + F + +V AL + + C N
Sbjct: 58 FNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTV 117
Query: 98 ---------SAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148
SA+S N V E+ S + VK
Sbjct: 118 KRFIYTSSGSAVSFNGKDKDV-----LDES------DWSDVDLLRSVKP---------FG 157
Query: 149 NVYGKSKVAAEK----FIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK 204
Y SK AEK F + + L I G +P S I+ ++ ++
Sbjct: 158 WNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDS--IEKALVLVLGKKE 215
Query: 205 VEFFHDECRCPVYVRDVVKI-ILALTN 230
V+V DV + I L N
Sbjct: 216 Q--IGVTRFHMVHVDDVARAHIYLLEN 240
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 46/199 (23%)
Query: 1 MS-KKRVLVVGGTGYLGQH----LLQGLSEIEGKPYDVAAT---HHSTPLPQLLLDALP- 51
MS K +LV GG GY+G H LL G YDV +S +A+
Sbjct: 2 MSTKGTILVTGGAGYIGSHTAVELLA-----HG--YDVVIADNLVNSKR------EAIAR 48
Query: 52 ------HSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAAL-----SVPRVCENDPDSAM 100
+ F + D+ + ++ AAL SV P
Sbjct: 49 IEKITGKTPAFHETDVSDERALARI-FDAHPITAAIHFAALKAVGESV-----AKPIEYY 102
Query: 101 SINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAE 159
N+ SL++ L E ++ S+ VY + E ++ N YG++K+ AE
Sbjct: 103 RNNL-DSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAE 161
Query: 160 KFIYEKCS-----NFAILR 173
+ + + + A LR
Sbjct: 162 QILRDVEAADPSWRVATLR 180
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL 61
++ ++L++G TG +G+H++ + G P T + L ++ V L
Sbjct: 1 TENKILILGPTGAIGRHIVWASIK-AGNPTYALVRKTITAANPETKEELIDNYQSLGVIL 59
Query: 62 KSGSGFDAVALK--FGQPDVVVNCAA 85
G D L Q D+V+ A
Sbjct: 60 LEGDINDHETLVKAIKQVDIVICAAG 85
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 43/275 (15%), Positives = 84/275 (30%), Gaps = 54/275 (19%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL 61
+ VLV G +G GQ + + L E + L+ A + + D+
Sbjct: 3 NLPTVLVTGASGRTGQIVYKKLKE-GSDKFVAKG---------LVRSAQGKEKIGGEADV 52
Query: 62 KSGSGFDAVALK--FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSL------VNWLS 113
G DA ++ F D +V + DP V+W+
Sbjct: 53 FIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIG 112
Query: 114 SFTENKENLLIHLSTDQVYEGVK-----SFYKEEDEIAPVNV-----YGKSKVAAEKFIY 163
+N I + GVK + P+N K AE+++
Sbjct: 113 --QKN----QIDAAKVA---GVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLA 163
Query: 164 EKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223
+ + + I+R+ + + + L + D +L K V DV +
Sbjct: 164 DSGTPYTIIRAGGLLDKEGGV---RELLVGKDDELLQTDTK----------TVPRADVAE 210
Query: 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
+ + L ++ ++G + +
Sbjct: 211 VCIQA----LLFEEAKNKAFDLGSKPEGTSTPTKD 241
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 6e-05
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA-THHSTPLPQLLLDALPHSFVFFDV 59
K ++L+ GGTGY+G H+++G + + T ++ LL + +
Sbjct: 9 GMKSKILIFGGTGYIGNHMVKGSLK---LGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKG 65
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAA 85
+L +K DVV++ A
Sbjct: 66 ELDEHEKLVE-LMK-KV-DVVISALA 88
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 6e-05
Identities = 41/204 (20%), Positives = 65/204 (31%), Gaps = 35/204 (17%)
Query: 2 SKKRVLVVGGTGYLGQH----LLQ--------------GLSEIEGKPYDVAATHHSTPLP 43
S RVLV GG GY+G H LL+ + +
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 44 QLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCE--NDPDSAMS 101
D+++ + V + G D VV+ A V E DP
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLA--VGESVRDPLKYYD 118
Query: 102 INVPSSLVNWLSSFTENKENLLIHLSTDQVY--------EGVKSFYKEEDEIAPVNVYGK 153
NV L L + +K + +I S+ ++ + +P + YG+
Sbjct: 119 NNVVGIL-RLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGE 177
Query: 154 SKVAAEKFIYEKCS----NFAILR 173
SK+ AE+ I + LR
Sbjct: 178 SKLIAERMIRDCAEAYGIKGICLR 201
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 7e-05
Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 48/223 (21%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGL---SEIEGKPY---------------DVAATHHSTPLP 43
+ VL+ G TG+LG++L+ L +++G+ + L
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELL 131
Query: 44 QLLLDALPHSFVFFDVDLK------SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPD 97
+ + D + +A D++V+ AA V
Sbjct: 132 RHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLA---ETVDLIVDSAA----MVNAFPYH 184
Query: 98 SAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV--------- 148
NV + + K ++ST V ++ ED V
Sbjct: 185 ELFGPNV-AGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDG 243
Query: 149 ---NVYGKSKVAAEKFIYE--KCSNF--AILRSSIIYGPQTIS 184
YG SK A E + E A+ R +I + +
Sbjct: 244 GWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYA 286
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 10/161 (6%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP--LPQLLLDALPHSFVFFDV-D 60
KRV V G TG+ G L L + + T + P + S D+ D
Sbjct: 10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQS-EIGDIRD 68
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+++ QP++V + AA + R+ ++P S NV ++ +
Sbjct: 69 QNKLLE----SIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGV 124
Query: 121 NLLIHLSTDQVYE--GVKSFYKEEDEIAPVNVYGKSKVAAE 159
++++++D+ Y+ Y+E + + + Y SK AE
Sbjct: 125 KAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAE 165
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 52/196 (26%), Positives = 76/196 (38%), Gaps = 38/196 (19%)
Query: 2 SKKRVLVVGGTGYLGQH----LLQGLSEIEGKPYDVAAT---HHSTPLPQLLLDALP-HS 53
+ K VLV GG GY+G H L++ G YD +ST L+ L H
Sbjct: 10 TSKIVLVTGGAGYIGSHTVVELIE-----NG--YDCVVADNLSNSTYDSVARLEVLTKHH 62
Query: 54 FVFFDVDLKSGSGFDAVALKFGQPDVVVNCAAL-----SVPRVCENDPDSAMSINVPSSL 108
F++VDL G + V ++ + D V++ A L S P N+
Sbjct: 63 IPFYEVDLCDRKGLEKVFKEY-KIDSVIHFAGLKAVGEST-----QIPLRYYHNNI-LGT 115
Query: 109 VNWLSSFTENKENLLIHLSTDQVYEGVKSF-----YKEEDEIAPVNVYGKSKVAAEKFIY 163
V L + + + S+ VY F EE + P N YG +K A E +
Sbjct: 116 VVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILN 175
Query: 164 EKCS------NFAILR 173
+ + FAILR
Sbjct: 176 DLYNSDKKSWKFAILR 191
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 50/267 (18%), Positives = 83/267 (31%), Gaps = 64/267 (23%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT----HHSTPLPQLL-LDALPHSFVF 56
+ V V G +G++G L+ L E G Y V AT + + LL L
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLE-RG--YTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 57 FDVDLKSGSGFDA----------VA--LKFGQPDVVVNC------AALSVPRVCENDPD- 97
+ DL FD VA + F D L + + C
Sbjct: 61 WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120
Query: 98 ---------SAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148
++I V + E+ S D + K
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPV-----YDES------CWS-DMEFCRAKK--------MTA 160
Query: 149 NVYGKSKVAAEK----FIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK 204
+Y SK AE+ + E +F + +++ GP +S +P S + S + G +
Sbjct: 161 WMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPS--LITALSPI-TGNE 217
Query: 205 VEFFHDECRCPVYVRDVVKI-ILALTN 230
+ V++ D+ I N
Sbjct: 218 AHYSIIRQGQFVHLDDLCNAHIYLFEN 244
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDV---AATHHSTPLPQLLLDALPHSFV-FF 57
+++++ GGTGY+G+ +++ P + T STP L + V
Sbjct: 3 HMEKIIIYGGTGYIGKFMVRASLS-FSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTII 61
Query: 58 DVDLKSGSGFDAVALKFGQPDVVVNCAA 85
+ +++ + LK D+V++
Sbjct: 62 EGEMEEHEKMVS-VLK-QV-DIVISALP 86
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 1 MS-KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDV---AATHHSTPLPQLLLDALPHSFVF 56
M K RVL+VGGTGY+G+ ++ G P V + Q+LL
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKL 59
Query: 57 FDVDLKSGSGFDAVALKFGQPDVVVNCAALSVP 89
+ L ALK DVV++ A V
Sbjct: 60 IEASLDDHQRLVD-ALK-QV-DVVISALAGGVL 89
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 4e-04
Identities = 45/197 (22%), Positives = 72/197 (36%), Gaps = 78/197 (39%)
Query: 1 MSKKRVLVVGGTGYLGQHL------------------------LQGLSEIEGKPYDVAAT 36
M ++LV GG G++G + L ++E P
Sbjct: 1 MHSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPR----- 55
Query: 37 HHSTPLPQLLLDALPHSFVFFDV-DLKSGSGFDAVALKFGQPDVVVNCAALS-VPRVCEN 94
++FV DV D ++ V + D VV+ AA S V R
Sbjct: 56 ---------------YTFVKGDVAD------YELVKELVRKVDGVVHLAAESHVDR---- 90
Query: 95 DPDSAMSINVPSSLV--NWLSSFT-------ENKENLLIHLSTDQVY----EGVKSFYKE 141
SI+ P + N + ++T EN E +H+STD+VY +G + E
Sbjct: 91 ------SISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKG---SFTE 141
Query: 142 EDEIAPVNVYGKSKVAA 158
D + P + Y +K A+
Sbjct: 142 NDRLMPSSPYSATKAAS 158
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 4e-04
Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 28/168 (16%)
Query: 1 MSKKRVLVVGGTG----YLGQHLLQGLSEIEGKPYDVAAT--HHSTPLPQLLLDALPHSF 54
R L+ G G YL HL + + +V T ++ LP + + S
Sbjct: 10 HGSMRALITGVAGFVGKYLANHLTE-------QNVEVFGTSRNNEAKLPNVEM----ISL 58
Query: 55 VFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSS 114
D+ V + +PD + + AA S + + S NV +L + L +
Sbjct: 59 -----DIMDSQRVKKV-ISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTL-HVLDA 111
Query: 115 FTENKENLLIHL-STDQVYEGV---KSFYKEEDEIAPVNVYGKSKVAA 158
++ + I + + Y + +S EE+++ P++ YG SK +
Sbjct: 112 VRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASV 159
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 12/115 (10%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
MS V+V G +G L+Q L + + + AT L +
Sbjct: 1 MSPGSVVVTGANRGIGLGLVQQLVK-DKNIRHIIATARDVEKATELKSIKDSRVHVLPLT 59
Query: 61 LKSGSGFDAVALKFGQP------DVVVNCAALSVPRVCENDPDSA-----MSINV 104
+ D K G+ +++N A + + +P+ A + +N
Sbjct: 60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNT 114
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 62/345 (17%), Positives = 131/345 (37%), Gaps = 67/345 (19%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDALPHSFVFFDVDLKS 63
RVL++G G++G HL + L + Y+V S + + L PH F F + D+
Sbjct: 2 RVLILGVNGFIGNHLTERL--LREDHYEVYGLDIGSDAISRFL--NHPH-FHFVEGDISI 56
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
S + + + DVV+ A++ P +P ++ +L + + ++ ++
Sbjct: 57 HS--EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENL-RIIRYCVKYRKRII 113
Query: 124 IHLSTDQVYEGVKSFYKEEDE------IAPVN----VYGKSKVAAEKFIY----EKCSNF 169
ST +VY G K DE + PVN +Y SK ++ I+ ++ F
Sbjct: 114 -FPSTSEVY-G-MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 170
Query: 170 AILRSSIIYGPQTISPVPKSLPI-----QWIDSVLSKGEKVEFFHD--ECRCPVYVRDVV 222
+ R GP+ + + Q I +++ +G ++ + RC +RD +
Sbjct: 171 TLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLV-EGSPIKLIDGGKQKRCFTDIRDGI 229
Query: 223 KIILALTNRWLSEDKQMQLLLNVGGPDR-VSRVQMAE-VDRGVQSPADISM--------- 271
+ + + + ++ ++N+G P+ S ++ E + +
Sbjct: 230 EALYRIIEN--AGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV 287
Query: 272 -------------------DITKLVQTLNIDP-VTYKDGVKLTLA 296
I + L+ +P + ++ + TL
Sbjct: 288 VESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLD 332
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 67/324 (20%), Positives = 127/324 (39%), Gaps = 50/324 (15%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDALPHS-FVFFDV 59
+KR+L+ GG G++G HL L ++V + T + + + H F +
Sbjct: 26 DRKRILITGGAGFVGSHLTDKLMM---DGHEVTVVDNFFTGRKRNVEHWIGHENFELINH 82
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
D+ + + ++ D + + A+ + P +P + N +L N L
Sbjct: 83 DVV-----EPLYIEV---DQIYHLASPASPPNYMYNPIKTLKTNTIGTL-NMLGLAKRVG 133
Query: 120 ENLLIHLSTDQVY-EGVKSFYKEEDE-----IAPVNVYGKSKVAAEKFIY----EKCSNF 169
LL+ ST +VY + E+ I P Y + K AE Y ++
Sbjct: 134 ARLLL-ASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEV 192
Query: 170 AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILA 227
+ R +GP+ + + +I L +GE + + + R YV D+V ++A
Sbjct: 193 RVARIFNTFGPRMHMNDGRVVS-NFILQAL-QGEPLTVYGSGSQTRAFQYVSDLVNGLVA 250
Query: 228 LTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-VDRGVQSPADISM-------------DI 273
L N +S +N+G P+ + ++ A+ + V S ++I DI
Sbjct: 251 LMNSNVSS------PVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDI 304
Query: 274 TKLVQTLNIDP-VTYKDGVKLTLA 296
K L +P V ++G+ +
Sbjct: 305 KKAKLMLGWEPVVPLEEGLNKAIH 328
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 38.8 bits (90), Expect = 8e-04
Identities = 20/176 (11%), Positives = 46/176 (26%), Gaps = 22/176 (12%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
+ ++G G + Q L L + + ++
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTD--MHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNP 64
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ A+ +VV A+ + + N+ +I
Sbjct: 65 GXLEQ-AVT-NA-EVVF-VGAMESGSDMASIVKALSRXNIRR----------------VI 104
Query: 125 HLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
+S + ++ Y + + A + E N+ ILR + +Y
Sbjct: 105 GVSMAGLSGEFPVALEKWTFDNLPISYVQGERQARNVLRESNLNYTILRLTWLYND 160
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.98 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.98 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.97 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.97 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.97 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.96 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.96 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.96 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.96 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.96 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.96 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.96 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.96 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.95 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.95 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.95 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.95 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.95 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.95 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.95 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.95 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.95 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.95 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.95 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.95 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.94 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.94 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.94 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.94 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.94 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.94 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.94 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.94 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.94 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.94 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.94 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.94 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.94 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.94 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.94 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.94 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.94 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.94 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.94 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.94 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.94 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.94 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.94 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.94 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.94 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.94 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.94 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.94 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.94 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.94 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.94 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.94 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.94 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.94 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.94 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.94 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.94 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.94 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.94 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.94 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.94 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.94 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.93 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.93 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.93 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.93 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.93 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.93 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.93 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.93 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.93 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.93 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.93 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.93 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.93 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.93 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.93 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.93 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.93 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.93 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.93 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.93 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.93 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.93 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.93 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.93 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.93 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.93 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.93 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.93 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.93 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.93 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.93 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.93 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.93 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.93 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.93 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.93 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.93 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.93 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.93 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.93 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.93 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.93 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.93 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.93 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.93 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.93 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.93 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.93 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.93 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.93 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.93 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.92 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.92 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.92 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.92 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.92 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.92 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.92 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.92 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.92 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.92 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.92 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.92 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.92 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.92 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.92 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.92 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.92 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.92 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.92 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.92 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.92 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.92 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.92 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.92 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.92 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.92 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.92 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.92 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.92 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.92 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.92 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.92 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.92 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.92 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.92 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.92 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.92 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.92 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.92 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.92 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.91 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.91 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.91 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.91 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.91 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.91 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.91 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.91 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.91 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.91 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.91 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.91 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.91 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.91 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.91 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.91 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.91 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.91 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.91 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.91 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.91 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.91 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.91 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.91 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.91 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.91 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.91 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.9 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.9 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.9 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.9 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.9 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.9 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.9 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.9 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.9 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.9 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.9 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.9 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.9 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.9 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.9 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.89 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.89 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.89 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.89 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.88 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.88 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.88 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.88 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.88 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.87 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.87 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.87 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.87 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.86 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.85 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.85 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.85 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.84 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.83 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.83 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.81 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.79 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.78 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.77 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.76 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.74 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.74 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.72 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.7 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.68 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.66 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.65 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.65 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.64 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.63 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.6 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.43 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.41 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.24 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.11 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.0 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.97 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.92 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.88 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.84 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.78 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.74 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.74 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.69 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.64 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.64 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.62 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.61 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.57 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.48 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.43 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.27 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.21 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.19 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 98.14 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 98.05 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.96 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.94 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.93 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.93 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 97.92 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.92 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.92 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.92 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.9 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.87 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.87 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.87 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.87 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.86 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.86 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.83 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 97.83 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.82 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.82 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.77 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.75 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.69 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.69 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.68 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.67 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.65 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.64 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.63 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.61 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.59 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.59 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.59 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.54 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.52 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.49 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.47 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.46 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.45 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.45 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.44 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.42 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.38 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.38 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.38 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.37 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.33 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.33 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.29 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.27 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.26 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.22 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.22 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.21 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.21 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.2 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.19 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.19 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.19 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.17 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.13 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.13 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 97.12 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.11 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.1 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.09 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.09 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.06 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.05 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.03 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.03 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.99 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.95 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.95 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.95 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.94 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.92 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.91 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.9 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.89 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.88 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.86 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.85 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.83 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.83 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.82 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.82 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.8 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.79 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.78 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.77 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.77 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.76 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.76 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.76 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.75 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 96.72 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.72 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.7 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.69 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.68 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.66 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 96.65 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 96.62 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.59 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.59 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.58 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 96.58 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.56 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.56 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.54 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 96.53 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.53 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.53 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.52 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.51 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.51 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.5 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.49 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 96.49 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.48 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.46 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.46 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.45 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.44 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.43 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.41 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.41 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.4 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.4 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.4 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.4 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 96.4 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.38 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 96.38 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.37 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.37 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.34 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.33 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 96.31 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.31 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.31 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 96.3 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.3 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.3 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 96.3 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.3 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.3 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.29 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.28 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.27 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.24 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.24 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.24 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.22 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 96.22 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.21 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.2 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.19 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.19 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 96.18 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 96.16 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 96.14 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=337.61 Aligned_cols=287 Identities=20% Similarity=0.258 Sum_probs=234.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----C----CceeEEEeecCCchhHHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----P----HSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~----~~~~~~~~D~~~~~~~~~~~~ 72 (300)
|++|+|||||||||||++|+++|+++| ++|++++|+..........+ . .++.++++|++|++++..+++
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 99 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLN---QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK 99 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence 357899999999999999999999999 89999999865433222211 1 568889999999988888776
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChh
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVY 151 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y 151 (300)
++|+|||||+......+..++...+++|+.++. +++++|++.++++|||+||..+|+.... +++|+++..|.+.|
T Consensus 100 ---~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~-~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y 175 (351)
T 3ruf_A 100 ---GVDHVLHQAALGSVPRSIVDPITTNATNITGFL-NILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPY 175 (351)
T ss_dssp ---TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHH-HHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHH
T ss_pred ---CCCEEEECCccCCcchhhhCHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCCCCCCCChh
Confidence 899999999976655556678889999999996 9999999999999999999999998765 89999999999999
Q ss_pred HHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCC-CchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHH
Q 022280 152 GKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPK-SLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKI 224 (300)
Q Consensus 152 ~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~ 224 (300)
+.+|..+|++++.+ +.+++++||+++|||+....... .+...++..+. .+..+.++| ++.++|+|++|+|++
T Consensus 176 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~g~~~~~~i~v~Dva~a 254 (351)
T 3ruf_A 176 AVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAML-KGDDVYINGDGETSRDFCYIDNVIQM 254 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHH-HTCCCEEESSSCCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHH-cCCCcEEeCCCCeEEeeEEHHHHHHH
Confidence 99999999998765 56899999999999986432222 34445555555 566666665 468999999999999
Q ss_pred HHHHHhc-cccccccccceeeecCCCccCHHHHHH-----hhc--------------cCCCCCccccChHHHHHhcCCCc
Q 022280 225 ILALTNR-WLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDR--------------GVQSPADISMDITKLVQTLNIDP 284 (300)
Q Consensus 225 ~~~~~~~-~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~--------------~~~~~~~~~~~~~k~~~~lg~~p 284 (300)
++.+++. +...+ ++||+++++.+|+.|+++ ... ......+..+|++|++++|||+|
T Consensus 255 ~~~~~~~~~~~~~----~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 330 (351)
T 3ruf_A 255 NILSALAKDSAKD----NIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRP 330 (351)
T ss_dssp HHHHHTCCGGGCS----EEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHHCCCC
T ss_pred HHHHHhhccccCC----CEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHhCCCC
Confidence 9999987 33333 399999999999999988 111 11223456799999999999999
Q ss_pred -CCHHHHHHHHHhhhc
Q 022280 285 -VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 -~~~~~~l~~~~~~~~ 299 (300)
++++++|+++++||.
T Consensus 331 ~~~~~~~l~~~~~~~~ 346 (351)
T 3ruf_A 331 NIKIREGLRLSMPWYV 346 (351)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 799999999999984
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=329.52 Aligned_cols=286 Identities=21% Similarity=0.302 Sum_probs=226.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC--chhhhhhcC-CCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP--LPQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
++|+|||||||||||++|+++|+++|+. ++|++.+|... ....+.... ..++.++++|++|++++..+++.. ++|
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~-~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 100 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYET-YKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKER-DVQ 100 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTT-EEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH-TCC
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCC-cEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhc-CCC
Confidence 4689999999999999999999999966 78888877642 222222111 257888999999999999998855 699
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC--CCCCCCCCCCCCChhHHHHH
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK--SFYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~--~~~~E~~~~~p~~~Y~~sK~ 156 (300)
+|||+|+......+..++...+++|+.++. +++++|++.++++|||+||..+|+... .+++|+++..|.+.|+.+|.
T Consensus 101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~-~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~~~~~p~~~Y~~sK~ 179 (346)
T 4egb_A 101 VIVNFAAESHVDRSIENPIPFYDTNVIGTV-TLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKA 179 (346)
T ss_dssp EEEECCCCC---------CHHHHHHTHHHH-HHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTTSCCCCCSHHHHHHH
T ss_pred EEEECCcccchhhhhhCHHHHHHHHHHHHH-HHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCCCCCCCCChhHHHHH
Confidence 999999987665556678889999999996 999999999999999999999999873 38999999999999999999
Q ss_pred HHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHh
Q 022280 157 AAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 157 ~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~ 230 (300)
++|.+++.+ +.+++++||+.+|||+... ..+...++.... .+.++.++++ +.++|+|++|+|++++.+++
T Consensus 180 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 255 (346)
T 4egb_A 180 SADMIALAYYKTYQLPVIVTRCSNNYGPYQYP---EKLIPLMVTNAL-EGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLH 255 (346)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECEEESTTCCT---TSHHHHHHHHHH-TTCCCEEETTSCCEECEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEeecceeCcCCCc---cchHHHHHHHHH-cCCCceeeCCCCeEEeeEEHHHHHHHHHHHHh
Confidence 999999874 5688999999999998642 234444555444 6666777654 67999999999999999999
Q ss_pred ccccccccccceeeecCCCccCHHHHHHh-----h----------ccCCCCCccccChHHHHHhcCCCc-CCHHHHHHHH
Q 022280 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAEV-----D----------RGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLT 294 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~~~~s~~e~~~~-----~----------~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~ 294 (300)
++. .++ +||+++++.+|+.|+++. . ........+.+|++|++++|||+| ++++++|+++
T Consensus 256 ~~~-~g~----~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~ 330 (346)
T 4egb_A 256 KGR-VGE----VYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQGLQET 330 (346)
T ss_dssp HCC-TTC----EEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHH
T ss_pred cCC-CCC----EEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCCCCHHHHHHHH
Confidence 865 333 999999999999999981 0 111223456789999999999999 7999999999
Q ss_pred Hhhhc
Q 022280 295 LAAEA 299 (300)
Q Consensus 295 ~~~~~ 299 (300)
++||.
T Consensus 331 ~~~~~ 335 (346)
T 4egb_A 331 VQWYE 335 (346)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99984
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=330.30 Aligned_cols=287 Identities=20% Similarity=0.211 Sum_probs=231.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CCCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LPHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
+|+|||||||||||++++++|+++| ++|++++|+.+........ .+..+.++++|++|++++.++++.. ++|
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (341)
T 3enk_A 5 KGTILVTGGAGYIGSHTAVELLAHG---YDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAH-PIT 80 (341)
T ss_dssp SCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHS-CCC
T ss_pred CcEEEEecCCcHHHHHHHHHHHHCC---CcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhcc-CCc
Confidence 5799999999999999999999999 8999999986654433322 1456788999999999999988864 899
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHH
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVA 157 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~ 157 (300)
+|||+|+..........+...++.|+.++. +++++|++.++++|||+||.++|+.... +++|+++..|.+.|+.||.+
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (341)
T 3enk_A 81 AAIHFAALKAVGESVAKPIEYYRNNLDSLL-SLLRVMRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLM 159 (341)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHHHHHH-HHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTSCCBCSSHHHHHHHH
T ss_pred EEEECccccccCccccChHHHHHHHHHHHH-HHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCCCCCCCChhHHHHHH
Confidence 999999987655455677888999999996 9999999999999999999999988765 89999999999999999999
Q ss_pred HHHHHHHHc-----CCceeEeeeeeeCCCCCC---C----CCCCchHHHHHHHHhc-CCceeecc--------CcccCce
Q 022280 158 AEKFIYEKC-----SNFAILRSSIIYGPQTIS---P----VPKSLPIQWIDSVLSK-GEKVEFFH--------DECRCPV 216 (300)
Q Consensus 158 ~e~~~~~~~-----~~~~ilR~~~v~G~~~~~---~----~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~i 216 (300)
+|.+++.++ .+++++||+++|||+... . .+..+.. ++...... ...+.++| ++.++|+
T Consensus 160 ~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 238 (341)
T 3enk_A 160 AEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMP-YVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYI 238 (341)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHH-HHHHHHHTSSSCEEEECSCSSSTTSSCEECEE
T ss_pred HHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHH-HHHHHHhcCCCceEEeCCccCCCCCCeeEeeE
Confidence 999998763 578999999999996421 1 1122333 34443333 34555544 4679999
Q ss_pred eHHHHHHHHHHHHhcc--ccccccccceeeecCCCccCHHHHHH--------------hhccCCCCCccccChHHHHHhc
Q 022280 217 YVRDVVKIILALTNRW--LSEDKQMQLLLNVGGPDRVSRVQMAE--------------VDRGVQSPADISMDITKLVQTL 280 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~--~~~~~~~~~i~ni~~~~~~s~~e~~~--------------~~~~~~~~~~~~~~~~k~~~~l 280 (300)
|++|+|++++.++++. ...+ ++||+++++.+|+.|+++ ............+|++|++++|
T Consensus 239 ~v~Dva~a~~~~~~~~~~~~~~----~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 314 (341)
T 3enk_A 239 HVVDLARGHIAALDALERRDAS----LTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETI 314 (341)
T ss_dssp EHHHHHHHHHHHHHHHHHHTSC----EEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHHH
T ss_pred EHHHHHHHHHHHHHhhhcCCcc----eEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCCCCCccccccCHHHHHHHc
Confidence 9999999999999873 2233 399999999999999998 1112223445778999999999
Q ss_pred CCCc-CCHHHHHHHHHhhhc
Q 022280 281 NIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 281 g~~p-~~~~~~l~~~~~~~~ 299 (300)
||+| ++++++|+++++||.
T Consensus 315 G~~p~~~l~~~l~~~~~~~~ 334 (341)
T 3enk_A 315 GWKAERDLERMCADHWRWQE 334 (341)
T ss_dssp CCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 9999 999999999999985
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=333.51 Aligned_cols=284 Identities=20% Similarity=0.324 Sum_probs=231.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecC-CchhHHHHHHhcCCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK-SGSGFDAVALKFGQPD 78 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~d 78 (300)
|+||+|||||||||||++|+++|+++ | ++|++++|+++....+.. ..++.++.+|++ |.+.+..+++ ++|
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~~~~~--~~~v~~~~~Dl~~d~~~~~~~~~---~~d 93 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTD---WEVFGMDMQTDRLGDLVK--HERMHFFEGDITINKEWVEYHVK---KCD 93 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSS---CEEEEEESCCTTTGGGGG--STTEEEEECCTTTCHHHHHHHHH---HCS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC---CEEEEEeCChhhhhhhcc--CCCeEEEeCccCCCHHHHHHHhc---cCC
Confidence 56789999999999999999999999 8 899999998776655443 257888999999 8888888887 899
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCC-------CCCCh
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEI-------APVNV 150 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~-------~p~~~ 150 (300)
+|||||+......+..++...+++|+.++. +++++|++.+ ++|||+||..+|+.... +++|++++ .|.+.
T Consensus 94 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~-~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~ 171 (372)
T 3slg_A 94 VILPLVAIATPATYVKQPLRVFELDFEANL-PIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWI 171 (372)
T ss_dssp EEEECBCCCCHHHHHHCHHHHHHHHTTTTH-HHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHH
T ss_pred EEEEcCccccHHHHhhCHHHHHHHHHHHHH-HHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCc
Confidence 999999987665555678889999999996 9999999988 89999999999998765 78888755 56779
Q ss_pred hHHHHHHHHHHHHHH---cCCceeEeeeeeeCCCCCCC-----CCCCchHHHHHHHHhcCCceeecc--CcccCceeHHH
Q 022280 151 YGKSKVAAEKFIYEK---CSNFAILRSSIIYGPQTISP-----VPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD 220 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~---~~~~~ilR~~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D 220 (300)
|+.+|.++|++++.+ +.+++++||+++|||+.... ....+...++.... .+..+.+++ ++.++|+|++|
T Consensus 172 Y~~sK~~~E~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~i~v~D 250 (372)
T 3slg_A 172 YACSKQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIV-RGENISLVDGGSQKRAFTYVDD 250 (372)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHH-HTCCEEEGGGGCCEEECEEHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEccccccCCCcccccccccccchHHHHHHHHHH-cCCCcEEeCCCceEEEEEEHHH
Confidence 999999999999998 55799999999999985421 12223444555444 567777775 46899999999
Q ss_pred HHHHHHHHHhccc--cccccccceeeecC-CCccCHHHHHH-----hhcc------------------------CCCCCc
Q 022280 221 VVKIILALTNRWL--SEDKQMQLLLNVGG-PDRVSRVQMAE-----VDRG------------------------VQSPAD 268 (300)
Q Consensus 221 ~a~~~~~~~~~~~--~~~~~~~~i~ni~~-~~~~s~~e~~~-----~~~~------------------------~~~~~~ 268 (300)
+|++++.+++++. ..+ ++||+++ ++.+|+.|+++ .... ......
T Consensus 251 va~a~~~~~~~~~~~~~~----~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (372)
T 3slg_A 251 GISALMKIIENSNGVATG----KIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQN 326 (372)
T ss_dssp HHHHHHHHHHCGGGTTTT----EEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC-------------CC
T ss_pred HHHHHHHHHhcccCcCCC----ceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccCCccccce
Confidence 9999999999864 233 3999999 48999999988 0000 013345
Q ss_pred cccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 269 ISMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 269 ~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
..+|++|++++|||+| ++++++|+++++||.
T Consensus 327 ~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~ 358 (372)
T 3slg_A 327 RVPKIENTMQELGWAPQFTFDDALRQIFEAYR 358 (372)
T ss_dssp CCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHT
T ss_pred eecCHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999 799999999999985
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=320.04 Aligned_cols=271 Identities=19% Similarity=0.185 Sum_probs=224.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
|+|+|||||||||||++|+++|+++| ++|++++|++.... + .++.++++|++ ++++.++++ ++|+||
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~-~-----~~~~~~~~Dl~-~~~~~~~~~---~~d~Vi 67 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDG---NTPIILTRSIGNKA-I-----NDYEYRVSDYT-LEDLINQLN---DVDAVV 67 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCC-----------CCEEEECCCC-HHHHHHHTT---TCSEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC---CEEEEEeCCCCccc-C-----CceEEEEcccc-HHHHHHhhc---CCCEEE
Confidence 36899999999999999999999999 89999999843322 2 26778999999 888887776 999999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
|+|+..... ++...+++|+.++. +++++|++.++++|||+||..+|+.... +++|+++..|.+.|+.+|..+|+
T Consensus 68 h~a~~~~~~----~~~~~~~~n~~~~~-~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 142 (311)
T 3m2p_A 68 HLAATRGSQ----GKISEFHDNEILTQ-NLYDACYENNISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSKLACEH 142 (311)
T ss_dssp ECCCCCCSS----SCGGGTHHHHHHHH-HHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTSCCCCSSHHHHHHHHHHH
T ss_pred EccccCCCC----ChHHHHHHHHHHHH-HHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Confidence 999976543 67788999999996 9999999999999999999999998774 89999999999999999999999
Q ss_pred HHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHhcccc
Q 022280 161 FIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNRWLS 234 (300)
Q Consensus 161 ~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~~ 234 (300)
+++++ +.+++++||+.+|||+.... .+...++..+. .+..+.+++ ++.++|+|++|+|++++.+++++.
T Consensus 143 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~-~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~- 217 (311)
T 3m2p_A 143 IGNIYSRKKGLCIKNLRFAHLYGFNEKNN---YMINRFFRQAF-HGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEK- 217 (311)
T ss_dssp HHHHHHHHSCCEEEEEEECEEECSCC--C---CHHHHHHHHHH-TCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTT-
T ss_pred HHHHHHHHcCCCEEEEeeCceeCcCCCCC---CHHHHHHHHHH-cCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCC-
Confidence 99885 44789999999999986422 33444454444 677777765 467899999999999999999865
Q ss_pred ccccccceeeecCCCccCHHHHHHh--------------hc-cCCCCCccccChHHHHHhcCCCc-CCHHHHHHHHHhhh
Q 022280 235 EDKQMQLLLNVGGPDRVSRVQMAEV--------------DR-GVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLAAE 298 (300)
Q Consensus 235 ~~~~~~~i~ni~~~~~~s~~e~~~~--------------~~-~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~ 298 (300)
. +++||+++++.+|+.|+++. .. ......+..+|++|++++|||+| ++++++|+++++|+
T Consensus 218 ~----~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~ 293 (311)
T 3m2p_A 218 V----SGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLLM 293 (311)
T ss_dssp C----CEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHHHH
T ss_pred C----CCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence 2 33999999999999999981 11 12234567899999999999999 69999999999998
Q ss_pred c
Q 022280 299 A 299 (300)
Q Consensus 299 ~ 299 (300)
.
T Consensus 294 ~ 294 (311)
T 3m2p_A 294 R 294 (311)
T ss_dssp C
T ss_pred H
Confidence 5
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=316.92 Aligned_cols=279 Identities=25% Similarity=0.327 Sum_probs=226.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|||||||||||++|+++|+++| ++|++++|+++...... ...+.++.+|++|.+ +...++ + |+|||+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~---~~~~~~~~~Dl~d~~-~~~~~~---~-d~vih~ 69 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG---YEVVVVDNLSSGRREFV---NPSAELHVRDLKDYS-WGAGIK---G-DVVFHF 69 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEECCCSSCCGGGS---CTTSEEECCCTTSTT-TTTTCC---C-SEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCC---CEEEEEeCCCCCchhhc---CCCceEEECccccHH-HHhhcC---C-CEEEEC
Confidence 689999999999999999999999 89999999865543332 456788999999987 555544 4 999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
|+......+..++...+++|+.++. +++++|++.++++|||+||..+|+.... +++|+++..|.+.|+.||.++|.++
T Consensus 70 A~~~~~~~~~~~~~~~~~~n~~~~~-~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~ 148 (312)
T 3ko8_A 70 AANPEVRLSTTEPIVHFNENVVATF-NVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMC 148 (312)
T ss_dssp CSSCSSSGGGSCHHHHHHHHHHHHH-HHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred CCCCCchhhhhCHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 9976666667788899999999996 9999999999999999999999998775 8999999999999999999999998
Q ss_pred HHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHhcccccc
Q 022280 163 YEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNRWLSED 236 (300)
Q Consensus 163 ~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~~~~~~~ 236 (300)
+.+ +.+++++||+++|||+... .....++.........+...++ +.++|+|++|+|++++.+++++...
T Consensus 149 ~~~~~~~g~~~~~lrp~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~- 223 (312)
T 3ko8_A 149 ATYARLFGVRCLAVRYANVVGPRLRH----GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEM- 223 (312)
T ss_dssp HHHHHHHCCEEEEEEECEEECTTCCS----SHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHhCCCEEEEeeccccCcCCCC----ChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhcccc-
Confidence 875 4578999999999997532 3344566666655566666664 6799999999999999999882211
Q ss_pred ccccceeeecCCCccCHHHHHH-----hh------c---------cCCCCCccccChHHHHHhcCCCc-CCHHHHHHHHH
Q 022280 237 KQMQLLLNVGGPDRVSRVQMAE-----VD------R---------GVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTL 295 (300)
Q Consensus 237 ~~~~~i~ni~~~~~~s~~e~~~-----~~------~---------~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~ 295 (300)
...+++||+++++.+|+.|+++ .. . .........+|++|++++|||+| ++++++|++++
T Consensus 224 ~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~ 303 (312)
T 3ko8_A 224 DAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTA 303 (312)
T ss_dssp CCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCSSCHHHHHHHHH
T ss_pred CCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 1123499999999999999988 00 0 01123446799999999999999 79999999999
Q ss_pred hhhc
Q 022280 296 AAEA 299 (300)
Q Consensus 296 ~~~~ 299 (300)
+|+.
T Consensus 304 ~~~~ 307 (312)
T 3ko8_A 304 EDLA 307 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=317.63 Aligned_cols=286 Identities=23% Similarity=0.258 Sum_probs=225.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
||+|||||||||||++++++|+++| ++|++++|+..... +.+..++.++++|++|++++.++++.. ++|+|||
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~d~vih 73 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEG---LSVVVVDNLQTGHE---DAITEGAKFYNGDLRDKAFLRDVFTQE-NIEAVMH 73 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCG---GGSCTTSEEEECCTTCHHHHHHHHHHS-CEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC---CEEEEEeCCCcCch---hhcCCCcEEEECCCCCHHHHHHHHhhc-CCCEEEE
Confidence 5799999999999999999999999 89999998754332 223346778999999999888888764 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
+|+......+..+++..+++|+.++. +++++|.+.++++||++||..+|+.... +++|+++..|.+.|+.+|.++|.+
T Consensus 74 ~a~~~~~~~~~~~~~~~~~~n~~~~~-~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~ 152 (330)
T 2c20_A 74 FAADSLVGVSMEKPLQYYNNNVYGAL-CLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKM 152 (330)
T ss_dssp CCCCCCHHHHHHSHHHHHHHHHHHHH-HHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTSCCCCSSHHHHHHHHHHHH
T ss_pred CCcccCccccccCHHHHHHHHhHHHH-HHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCCCCCCCChHHHHHHHHHHH
Confidence 99976543344577889999999996 9999999999999999999999987654 899999999999999999999999
Q ss_pred HHHH----cCCceeEeeeeeeCCCCCCC------CCCCchHHHHHHHHh-cCCceeecc--------CcccCceeHHHHH
Q 022280 162 IYEK----CSNFAILRSSIIYGPQTISP------VPKSLPIQWIDSVLS-KGEKVEFFH--------DECRCPVYVRDVV 222 (300)
Q Consensus 162 ~~~~----~~~~~ilR~~~v~G~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~i~v~D~a 222 (300)
++.+ +.+++++||+++|||+.... ....+.. ++..... ....+.++| ++.++|+|++|+|
T Consensus 153 ~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva 231 (330)
T 2c20_A 153 LHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIP-LVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLV 231 (330)
T ss_dssp HHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHH-HHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHHH
T ss_pred HHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHH-HHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHHH
Confidence 9876 45789999999999963211 1122232 3333332 234455544 3578999999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCccCHHHHHHh--------------hccCCCCCccccChHHHHHhcCCCc-C-C
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV--------------DRGVQSPADISMDITKLVQTLNIDP-V-T 286 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~--------------~~~~~~~~~~~~~~~k~~~~lg~~p-~-~ 286 (300)
++++.+++++...+ .+++||+++++.+|+.|+++. ......+....+|++|++++|||+| + +
T Consensus 232 ~a~~~~~~~~~~~~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~ 309 (330)
T 2c20_A 232 AAHFLGLKDLQNGG--ESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVN 309 (330)
T ss_dssp HHHHHHHHHHHTTC--CCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCSCCC
T ss_pred HHHHHHHhccccCC--CCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCCcccccccCHHHHHHHhCCCCccCC
Confidence 99999998754321 134999999999999999881 0111223456789999999999999 6 9
Q ss_pred HHHHHHHHHhhhc
Q 022280 287 YKDGVKLTLAAEA 299 (300)
Q Consensus 287 ~~~~l~~~~~~~~ 299 (300)
++++|+++++|+.
T Consensus 310 l~~~l~~~~~~~~ 322 (330)
T 2c20_A 310 VKTIIEHAWNWHQ 322 (330)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999984
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=323.06 Aligned_cols=282 Identities=20% Similarity=0.236 Sum_probs=227.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhh--ccCCCceeeecCCCCCch----------hhhhhcCCCceeEEEeecCCchhHHH
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSE--IEGKPYDVAATHHSTPLP----------QLLLDALPHSFVFFDVDLKSGSGFDA 69 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~--~g~~~~~v~~~~r~~~~~----------~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (300)
++|+|||||||||||++|+++|++ +| ++|++++|+.... .......+..+.++.+|++|+++++.
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPK---AKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTT---SEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCC---CeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHH
Confidence 468999999999999999999999 89 8999999975411 11111223456789999999988887
Q ss_pred HHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 70 VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 70 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
+ ...++|+||||||.... +..+++..+++|+.++. +++++|++.+++ |||+||.++|+....+++|+++..|.+
T Consensus 86 ~--~~~~~D~vih~A~~~~~--~~~~~~~~~~~Nv~gt~-~ll~aa~~~~~~-~V~~SS~~vyg~~~~~~~E~~~~~p~~ 159 (362)
T 3sxp_A 86 L--EKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFL-NLLEIARSKKAK-VIYASSAGVYGNTKAPNVVGKNESPEN 159 (362)
T ss_dssp H--TTSCCSEEEECCCCCGG--GCCCHHHHHHHHTHHHH-HHHHHHHHTTCE-EEEEEEGGGGCSCCSSBCTTSCCCCSS
T ss_pred h--hccCCCEEEECCccCCc--cccCHHHHHHHHHHHHH-HHHHHHHHcCCc-EEEeCcHHHhCCCCCCCCCCCCCCCCC
Confidence 7 23489999999996543 45678899999999996 999999998885 999999999999888999999999999
Q ss_pred hhHHHHHHHHHHHHHHcC--CceeEeeeeeeCCCCCCCCC-CCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS--NFAILRSSIIYGPQTISPVP-KSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKI 224 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~--~~~ilR~~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~ 224 (300)
.|+.||.++|.+++.++. +++++||+++|||+...... ..+...++.... .+..+.++++ +.++|+|++|+|++
T Consensus 160 ~Y~~sK~~~E~~~~~~~~~~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~i~v~Dva~a 238 (362)
T 3sxp_A 160 VYGFSKLCMDEFVLSHSNDNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAM-AFKEVKLFEFGEQLRDFVYIEDVIQA 238 (362)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHH-TTSEEECSGGGCCEEECEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHH-hCCCeEEECCCCeEEccEEHHHHHHH
Confidence 999999999999999885 58999999999998642211 133444554444 6666666654 68999999999999
Q ss_pred HHHHHhccccccccccceeeecCCCccCHHHHHHh-----h--------cc-CCCCCccccChHHHHHhcCCCc-CCHHH
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV-----D--------RG-VQSPADISMDITKLVQTLNIDP-VTYKD 289 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~-----~--------~~-~~~~~~~~~~~~k~~~~lg~~p-~~~~~ 289 (300)
++.+++.+.. + +||+++++.+|+.|+++. . .. ........+|++|++++|||+| +++++
T Consensus 239 i~~~~~~~~~-----g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e 312 (362)
T 3sxp_A 239 NVKAMKAQKS-----G-VYNVGYSQARSYNEIVSILKEHLGDFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPLYDLES 312 (362)
T ss_dssp HHHHTTCSSC-----E-EEEESCSCEEEHHHHHHHHHHHHCCCEEECCC-------CCCCBCCHHHHHHHCCCCCCCHHH
T ss_pred HHHHHhcCCC-----C-EEEeCCCCCccHHHHHHHHHHHcCCCceEECCCCCcCcccceecCHHHHHHHhCCCCCCCHHH
Confidence 9999987532 2 899999999999999981 1 01 1223456799999999999999 79999
Q ss_pred HHHHHHhhhc
Q 022280 290 GVKLTLAAEA 299 (300)
Q Consensus 290 ~l~~~~~~~~ 299 (300)
+|+++++||.
T Consensus 313 ~l~~~~~~~~ 322 (362)
T 3sxp_A 313 GIKDYLPHIH 322 (362)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999999985
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-45 Score=311.50 Aligned_cols=259 Identities=25% Similarity=0.359 Sum_probs=223.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|||||||||||+++++.|+++| ++|++++|. ++|++|++++.++++.. ++|+|||+
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~------------------~~D~~d~~~~~~~~~~~-~~d~vi~~ 63 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEE---YDIYPFDKK------------------LLDITNISQVQQVVQEI-RPHIIIHC 63 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTT---EEEEEECTT------------------TSCTTCHHHHHHHHHHH-CCSEEEEC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC---CEEEEeccc------------------ccCCCCHHHHHHHHHhc-CCCEEEEC
Confidence 489999999999999999999999 999999982 47999999999888866 89999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
|+......+..+++..+++|+.++. +++++|++.++ +|||+||..+|+.... +++|+++..|.+.|+.+|..+|+++
T Consensus 64 a~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~ 141 (287)
T 3sc6_A 64 AAYTKVDQAEKERDLAYVINAIGAR-NVAVASQLVGA-KLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFV 141 (287)
T ss_dssp CCCCCHHHHTTCHHHHHHHHTHHHH-HHHHHHHHHTC-EEEEEEEGGGSCCCCSSCBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred CcccChHHHhcCHHHHHHHHHHHHH-HHHHHHHHcCC-eEEEEchhhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9987765556788999999999996 99999999988 7999999999988764 8999999999999999999999999
Q ss_pred HHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccce
Q 022280 163 YEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLL 242 (300)
Q Consensus 163 ~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i 242 (300)
+.++.+++++||+.+|||+.. .+...++ .....+..+.+.+++.++|+|++|+|++++.+++++. .++
T Consensus 142 ~~~~~~~~ilR~~~v~G~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~------~~~ 209 (287)
T 3sc6_A 142 KELHNKYFIVRTSWLYGKYGN-----NFVKTMI-RLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSL------YGT 209 (287)
T ss_dssp HHHCSSEEEEEECSEECSSSC-----CHHHHHH-HHHTTCSEEEEECSCEECCEEHHHHHHHHHHHHTSCC------CEE
T ss_pred HHhCCCcEEEeeeeecCCCCC-----cHHHHHH-HHHHcCCCeEeecCcccCceEHHHHHHHHHHHHhCCC------CCe
Confidence 999999999999999998742 2233333 3444677888888889999999999999999999855 239
Q ss_pred eeecCCCccCHHHHHH-----h--------------hccCCCCCccccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 243 LNVGGPDRVSRVQMAE-----V--------------DRGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 243 ~ni~~~~~~s~~e~~~-----~--------------~~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
||+++++.+|+.|+++ . ......+.+..+|++|++ +|||+| ++++++|+++++|+.
T Consensus 210 ~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~ 285 (287)
T 3sc6_A 210 YHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LNGFLQMPSWEEGLERFFIETK 285 (287)
T ss_dssp EECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HTTCCCCCBHHHHHHHHHHHTC
T ss_pred EEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hhCCCCCccHHHHHHHHHHHHh
Confidence 9999999999999988 0 112233456779999998 899999 999999999999875
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-45 Score=314.64 Aligned_cols=275 Identities=21% Similarity=0.287 Sum_probs=220.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
||+|||||||||||++|+++|+++| ..|.+..++...... ....+.++.+|+++ +++.++++ ++|+|||
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~~~----~~~~~~~~~~Dl~~-~~~~~~~~---~~d~vih 69 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNEEF----VNEAARLVKADLAA-DDIKDYLK---GAEEVWH 69 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCGGG----SCTTEEEECCCTTT-SCCHHHHT---TCSEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCChhh----cCCCcEEEECcCCh-HHHHHHhc---CCCEEEE
Confidence 5799999999999999999999999 556655555433322 24567889999999 88888877 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
+|+......+..+++..+++|+.++. +++++|++.++++|||+||..+|+.... +++|+++..|.+.|+.+|.++|.+
T Consensus 70 ~a~~~~~~~~~~~~~~~~~~nv~~~~-~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~ 148 (313)
T 3ehe_A 70 IAANPDVRIGAENPDEIYRNNVLATY-RLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEAL 148 (313)
T ss_dssp CCCCCCCC-CCCCHHHHHHHHHHHHH-HHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred CCCCCChhhhhhCHHHHHHHHHHHHH-HHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99976655566788999999999996 9999999999999999999999998765 899999999999999999999999
Q ss_pred HHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHhccccc
Q 022280 162 IYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNRWLSE 235 (300)
Q Consensus 162 ~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~~~~~~ 235 (300)
++.+ +.+++++||+++|||+... ..+..++.........+.++++ +.++|+|++|+|++++.+++... .
T Consensus 149 ~~~~~~~~g~~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~-~ 223 (313)
T 3ehe_A 149 IESYCHTFDMQAWIYRFANVIGRRSTH----GVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDE-R 223 (313)
T ss_dssp HHHHHHHTTCEEEEEECSCEESTTCCC----SHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCCS-S
T ss_pred HHHHHHhcCCCEEEEeeccccCcCCCc----ChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccCC-C
Confidence 9875 4478999999999997542 3344566666655566767765 67999999999999999998422 2
Q ss_pred cccccceeeecCCCccCHHHHHHhhc-----------------cCCCCCccccChHHHHHhcCCCc-CCHHHHHHHHHhh
Q 022280 236 DKQMQLLLNVGGPDRVSRVQMAEVDR-----------------GVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLAA 297 (300)
Q Consensus 236 ~~~~~~i~ni~~~~~~s~~e~~~~~~-----------------~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~ 297 (300)
+++||+++++.+|+.|+++... .........+|++|+ +.|||+| ++++++|+++++|
T Consensus 224 ----~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~-~~lG~~p~~~~~e~l~~~~~~ 298 (313)
T 3ehe_A 224 ----VNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKL-KRLGWKPRYNSEEAVRMAVRD 298 (313)
T ss_dssp ----EEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHH-HHHTCCCSCCHHHHHHHHHHH
T ss_pred ----CceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHH-HHcCCCCCCCHHHHHHHHHHH
Confidence 3399999999999999998100 011123456899999 5599999 7999999999999
Q ss_pred hc
Q 022280 298 EA 299 (300)
Q Consensus 298 ~~ 299 (300)
+.
T Consensus 299 ~~ 300 (313)
T 3ehe_A 299 LV 300 (313)
T ss_dssp HH
T ss_pred HH
Confidence 84
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=317.54 Aligned_cols=287 Identities=19% Similarity=0.195 Sum_probs=228.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc----hhhhhhcC----CCceeEEEeecCCchhHHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL----PQLLLDAL----PHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~----~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
|+||+|||||||||||++|+++|+++| ++|++++|++.. ...+.+.+ ..++.++.+|++|++++..+++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 101 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLD---QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA 101 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc
Confidence 357899999999999999999999999 899999997542 22222212 2467789999999988888877
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChh
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVY 151 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y 151 (300)
++|+|||+|+......+..+++..+++|+.++. +++++|.+.++++||++||..+|+.... +++|+++..|.+.|
T Consensus 102 ---~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~-~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~~~~~~~~Y 177 (352)
T 1sb8_A 102 ---GVDYVLHQAALGSVPRSINDPITSNATNIDGFL-NMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPY 177 (352)
T ss_dssp ---TCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHH-HHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHH
T ss_pred ---CCCEEEECCcccCchhhhhCHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCCCCCCCChh
Confidence 899999999976543344577889999999996 9999999999999999999999998765 89999999999999
Q ss_pred HHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCC-CCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHH
Q 022280 152 GKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPV-PKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKI 224 (300)
Q Consensus 152 ~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~ 224 (300)
+.+|.++|.+++.+ +.+++++||+.+|||+..... ...+...++..+. .+.++.++++ +.++|+|++|+|++
T Consensus 178 ~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~g~~~~~~i~v~Dva~a 256 (352)
T 1sb8_A 178 AVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMI-QGDDVYINGDGETSRDFCYIENTVQA 256 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHH-HTCCCEEESSSCCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHH-CCCCcEEeCCCCceEeeEEHHHHHHH
Confidence 99999999998765 568999999999999754221 1133444555444 4556665554 67899999999999
Q ss_pred HHHHHhcc-ccccccccceeeecCCCccCHHHHHH-----h---hccC-----------CCCCccccChHHHHHhcCCCc
Q 022280 225 ILALTNRW-LSEDKQMQLLLNVGGPDRVSRVQMAE-----V---DRGV-----------QSPADISMDITKLVQTLNIDP 284 (300)
Q Consensus 225 ~~~~~~~~-~~~~~~~~~i~ni~~~~~~s~~e~~~-----~---~~~~-----------~~~~~~~~~~~k~~~~lg~~p 284 (300)
++.+++.. ... +++||+++++.+|+.|+++ . .... .......+|++|++++|||+|
T Consensus 257 ~~~~~~~~~~~~----~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 332 (352)
T 1sb8_A 257 NLLAATAGLDAR----NQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAP 332 (352)
T ss_dssp HHHHHTCCGGGC----SEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCC
T ss_pred HHHHHhccccCC----CceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhccCCHHHHHHHhCCCC
Confidence 99998862 222 3499999999999999888 2 1111 112345689999999999999
Q ss_pred -CCHHHHHHHHHhhhc
Q 022280 285 -VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 -~~~~~~l~~~~~~~~ 299 (300)
++++++|+++++||.
T Consensus 333 ~~~~~e~l~~~~~~~~ 348 (352)
T 1sb8_A 333 KYDVSAGVALAMPWYI 348 (352)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 899999999999984
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=317.27 Aligned_cols=289 Identities=20% Similarity=0.219 Sum_probs=226.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc------hh----hhhhcCCCceeEEEeecCCchhHHHHH
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL------PQ----LLLDALPHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~------~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (300)
|+|+|||||||||||++++++|+++| ++|++++|+... .. .+....+.++.++.+|++|++++..++
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAG---YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLF 77 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT---CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHH
Confidence 36899999999999999999999999 899999886432 11 111111346778999999999988888
Q ss_pred HhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCC-CC
Q 022280 72 LKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAP-VN 149 (300)
Q Consensus 72 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p-~~ 149 (300)
+.. ++|+|||+|+......+..+++..+++|+.++. +++++|++.++++|||+||..+|+.... +++|+++..| .+
T Consensus 78 ~~~-~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~~~~p~~~ 155 (348)
T 1ek6_A 78 KKY-SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTI-QLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTN 155 (348)
T ss_dssp HHC-CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHH-HHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSS
T ss_pred Hhc-CCCEEEECCCCcCccchhhchHHHHHHHHHHHH-HHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCCCCCCCCC
Confidence 765 899999999976543344577889999999996 9999999999999999999999987554 8999998888 88
Q ss_pred hhHHHHHHHHHHHHHHc-----CCceeEeeeeeeCCCCC---CCC----CCCchHHHHHHHHh-cCCceeecc-------
Q 022280 150 VYGKSKVAAEKFIYEKC-----SNFAILRSSIIYGPQTI---SPV----PKSLPIQWIDSVLS-KGEKVEFFH------- 209 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-----~~~~ilR~~~v~G~~~~---~~~----~~~~~~~~~~~~~~-~~~~~~~~~------- 209 (300)
.|+.+|.++|.+++.++ .+++++||+++|||+.. ... +..+.. ++..... .+..+.++|
T Consensus 156 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 234 (348)
T 1ek6_A 156 PYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMP-YVSQVAIGRREALNVFGNDYDTED 234 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHH-HHHHHHHTSSSCEEEECSCSSSSS
T ss_pred chHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHH-HHHHHHHhcCCCeEEeCCcccCCC
Confidence 99999999999998763 57899999999999531 111 122333 3334443 455566654
Q ss_pred -CcccCceeHHHHHHHHHHHHhccc-cccccccceeeecCCCccCHHHHHHh-----h---------ccCCCCCccccCh
Q 022280 210 -DECRCPVYVRDVVKIILALTNRWL-SEDKQMQLLLNVGGPDRVSRVQMAEV-----D---------RGVQSPADISMDI 273 (300)
Q Consensus 210 -~~~~~~i~v~D~a~~~~~~~~~~~-~~~~~~~~i~ni~~~~~~s~~e~~~~-----~---------~~~~~~~~~~~~~ 273 (300)
++.++|+|++|+|++++.+++++. ..+ +++||+++++.+|+.|+++. . ..........+|+
T Consensus 235 g~~~~~~i~v~Dva~a~~~~~~~~~~~~g---~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~ 311 (348)
T 1ek6_A 235 GTGVRDYIHVVDLAKGHIAALRKLKEQCG---CRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANP 311 (348)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHTTTCC---EEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCC
T ss_pred CceEEeeEEHHHHHHHHHHHHhcccccCC---ceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCccchhhccCH
Confidence 457899999999999999998752 122 23999999999999999881 0 0111234567899
Q ss_pred HHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 274 TKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 274 ~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
+|++++|||+| ++++++|+++++|+.
T Consensus 312 ~k~~~~lG~~p~~~l~~~l~~~~~w~~ 338 (348)
T 1ek6_A 312 SLAQEELGWTAALGLDRMCEDLWRWQK 338 (348)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999 899999999999984
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-45 Score=320.47 Aligned_cols=290 Identities=18% Similarity=0.210 Sum_probs=228.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
.+|+|||||||||||++|+++|+++| ++|++++|+++....+...+ ..++.++++|++|++++..+++.. ++|+
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 83 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMG---ATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREF-QPEI 83 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCC---CeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhc-CCCE
Confidence 56899999999999999999999999 89999999866544333222 356788999999999999888865 7999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccccccCCCC--CCCCCCCCCCCChhHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGVKS--FYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~--~~~E~~~~~p~~~Y~~sK~ 156 (300)
|||+|+......+..+++..+++|+.++. +++++|.+.+ +++|||+||..+|+.... +++|+++..|.+.|+.+|.
T Consensus 84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~-~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~~~~~Y~~sK~ 162 (357)
T 1rkx_A 84 VFHMAAQPLVRLSYSEPVETYSTNVMGTV-YLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKG 162 (357)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHH-HHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHH
T ss_pred EEECCCCcccccchhCHHHHHHHHHHHHH-HHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCCCCCCccHHHHH
Confidence 99999965433345577889999999996 9999999876 789999999999998764 7889988889999999999
Q ss_pred HHHHHHHHH-------------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc-CcccCceeHHHHH
Q 022280 157 AAEKFIYEK-------------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH-DECRCPVYVRDVV 222 (300)
Q Consensus 157 ~~e~~~~~~-------------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~v~D~a 222 (300)
++|.+++.+ +.+++++||+.+|||+... ...+...++..+. .+..+.+.+ ++.++|+|++|+|
T Consensus 163 ~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~--~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~v~v~Dva 239 (357)
T 1rkx_A 163 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA--LDRIVPDILRAFE-QSQPVIIRNPHAIRPWQHVLEPL 239 (357)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC--SSCHHHHHHHHHH-TTCCEECSCTTCEECCEETHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCc--cccHHHHHHHHHh-cCCCEEECCCCCeeccEeHHHHH
Confidence 999999776 5578999999999997532 1234444555444 556655543 4678999999999
Q ss_pred HHHHHHHhccccccccccceeeecCC--CccCHHHHHH-----hhc----------cCCCCCccccChHHHHHhcCCCc-
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGP--DRVSRVQMAE-----VDR----------GVQSPADISMDITKLVQTLNIDP- 284 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~--~~~s~~e~~~-----~~~----------~~~~~~~~~~~~~k~~~~lg~~p- 284 (300)
++++.++++....+...+++||++++ +.+|+.|+++ ... .........+|++|++++|||+|
T Consensus 240 ~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 319 (357)
T 1rkx_A 240 SGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPR 319 (357)
T ss_dssp HHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCC
T ss_pred HHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCCHHHHHHHhCCCcC
Confidence 99999997521111112349999984 5899999888 100 01123446799999999999999
Q ss_pred CCHHHHHHHHHhhhc
Q 022280 285 VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 ~~~~~~l~~~~~~~~ 299 (300)
++++++|+++++||.
T Consensus 320 ~~l~e~l~~~~~~~~ 334 (357)
T 1rkx_A 320 WNLNTTLEYIVGWHK 334 (357)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 899999999999974
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=312.29 Aligned_cols=279 Identities=25% Similarity=0.342 Sum_probs=223.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|||||||||||++++++|+++| ++|++++|....... .+...+.++++|++|++++.++++.. ++|+|||+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~vi~~ 73 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARG---LEVAVLDNLATGKRE---NVPKGVPFFRVDLRDKEGVERAFREF-RPTHVSHQ 73 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEECCCSSCCGG---GSCTTCCEECCCTTCHHHHHHHHHHH-CCSEEEEC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC---CEEEEEECCCcCchh---hcccCeEEEECCCCCHHHHHHHHHhc-CCCEEEEC
Confidence 589999999999999999999999 899999885432211 12245677899999999888888765 89999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecc-ccccC-CC-CCCCCCCCCCCCChhHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTD-QVYEG-VK-SFYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~-~~~~~-~~-~~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
|+......+..++...+++|+.++. +++++|.+.++++||++||. .+|+. .. .+++|+++..|.+.|+.||.++|.
T Consensus 74 a~~~~~~~~~~~~~~~~~~N~~g~~-~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~ 152 (311)
T 2p5y_A 74 AAQASVKVSVEDPVLDFEVNLLGGL-NLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEH 152 (311)
T ss_dssp CSCCCHHHHHHCHHHHHHHHTHHHH-HHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCCSHHHHHHHHHHH
T ss_pred ccccCchhhhhCHHHHHHHHHHHHH-HHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCCCCCCCChHHHHHHHHHH
Confidence 9976544445577889999999996 99999999899999999998 89986 33 378999988899999999999999
Q ss_pred HHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeec-----cC--cccCceeHHHHHHHHHHHH
Q 022280 161 FIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF-----HD--ECRCPVYVRDVVKIILALT 229 (300)
Q Consensus 161 ~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~i~v~D~a~~~~~~~ 229 (300)
+++.+ +.+++++||+++|||+........+...++.... .+.++.++ ++ +.++|+|++|+|++++.++
T Consensus 153 ~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~ 231 (311)
T 2p5y_A 153 YLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVL-KGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALAL 231 (311)
T ss_dssp HHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHH-HTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHH-cCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHH
Confidence 98764 5689999999999997643222223334444444 45555555 43 5789999999999999999
Q ss_pred hccccccccccceeeecCCCccCHHHHHH-----hh---------ccCCCCCccccChHHHHHhcCCCc-CCHHHHHHHH
Q 022280 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VD---------RGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLT 294 (300)
Q Consensus 230 ~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~---------~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~ 294 (300)
+.+ ++ +||+++++.+|+.|+++ .. ..........+|++|+++ |||+| ++++++|+++
T Consensus 232 ~~~---~~----~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~ 303 (311)
T 2p5y_A 232 FSL---EG----IYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLMA-HGWRPKVGFQEGIRLT 303 (311)
T ss_dssp HHC---CE----EEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCTTCCSBCCBCCHHHHT-TTCCCSSCHHHHHHHH
T ss_pred hCC---CC----EEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCccchhhccCCHHHHHH-CCCCCCCCHHHHHHHH
Confidence 873 33 99999999999999988 10 011223457799999999 99999 8999999999
Q ss_pred Hhhhc
Q 022280 295 LAAEA 299 (300)
Q Consensus 295 ~~~~~ 299 (300)
++||.
T Consensus 304 ~~~~~ 308 (311)
T 2p5y_A 304 VDHFR 308 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=311.72 Aligned_cols=278 Identities=17% Similarity=0.205 Sum_probs=224.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++|+|||||||||||++|+++|+++| ++|++++|+++. .. + ++.++.+|++|++++..+++.. ++|+||
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~-~~----l--~~~~~~~Dl~d~~~~~~~~~~~-~~d~vi 79 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQN---VEVFGTSRNNEA-KL----P--NVEMISLDIMDSQRVKKVISDI-KPDYIF 79 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCTTC-CC----T--TEEEEECCTTCHHHHHHHHHHH-CCSEEE
T ss_pred CcceEEEECCCChHHHHHHHHHHHCC---CEEEEEecCCcc-cc----c--eeeEEECCCCCHHHHHHHHHhc-CCCEEE
Confidence 36899999999999999999999999 899999998654 21 1 5777899999999998888753 699999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhc-cCCeEEEeeccccccCC---CCCCCCCCCCCCCChhHHHHHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQVYEGV---KSFYKEEDEIAPVNVYGKSKVA 157 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~---~~~~~E~~~~~p~~~Y~~sK~~ 157 (300)
|||+......+..+++..+++|+.++. +++++|.+. ++++||++||..+|+.. ..+++|+++..|.+.|+.||.+
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~Nv~g~~-~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~sK~~ 158 (321)
T 2pk3_A 80 HLAAKSSVKDSWLNKKGTFSTNVFGTL-HVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKAS 158 (321)
T ss_dssp ECCSCCCHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHHHHH
T ss_pred EcCcccchhhhhhcHHHHHHHHHHHHH-HHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHHHHH
Confidence 999987654455678889999999996 999999775 68899999999999975 3489999998899999999999
Q ss_pred HHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh--cC--Cceeecc--CcccCceeHHHHHHHHHH
Q 022280 158 AEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLS--KG--EKVEFFH--DECRCPVYVRDVVKIILA 227 (300)
Q Consensus 158 ~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~--~~~~~~i~v~D~a~~~~~ 227 (300)
+|.+++.+ +.+++++||+++|||+... ..+...++..... .+ .++...+ ++.++|+|++|+|++++.
T Consensus 159 ~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~ 235 (321)
T 2pk3_A 159 VGMLARQYVKAYGMDIIHTRTFNHIGPGQSL---GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWL 235 (321)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEECTTCCT---TSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEeCcccCcCCCC---CchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHH
Confidence 99999876 5689999999999998642 2233344444432 14 4555555 367899999999999999
Q ss_pred HHhccccccccccceeeecCCCccCHHHHHHh--------------h--ccCCCCCccccChHHHHHhcCCCc-CCHHHH
Q 022280 228 LTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV--------------D--RGVQSPADISMDITKLVQTLNIDP-VTYKDG 290 (300)
Q Consensus 228 ~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~--------------~--~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~ 290 (300)
+++.+. .+ ++||+++++.+|+.|+++. + ..........+|++|++++|||+| ++++++
T Consensus 236 ~~~~~~-~g----~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~ 310 (321)
T 2pk3_A 236 LSQYGK-TG----DVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLEKS 310 (321)
T ss_dssp HHHHCC-TT----CEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHHHCCCCCSCHHHH
T ss_pred HHhCCC-CC----CeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHHcCCCcCCCHHHH
Confidence 998753 23 3999999999999999880 0 011123457789999999999999 699999
Q ss_pred HHHHHhhhc
Q 022280 291 VKLTLAAEA 299 (300)
Q Consensus 291 l~~~~~~~~ 299 (300)
|+++++||.
T Consensus 311 l~~~~~~~~ 319 (321)
T 2pk3_A 311 LFEILQSYR 319 (321)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999985
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=313.73 Aligned_cols=287 Identities=15% Similarity=0.082 Sum_probs=224.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh-hhhhcC--CCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ-LLLDAL--PHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~-~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
++|+|||||||||||++|+++|+++| ++|++++|+++... .....+ ..++.++.+|++|++++..+++.. ++|
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 88 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKG---YRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKA-QPQ 88 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHH-CCS
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCC---CeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHc-CCC
Confidence 46899999999999999999999999 89999999865421 111111 246778899999999999888865 799
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC-CeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHH
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE-NLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~-~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~ 156 (300)
+|||+|+......+..+++..+++|+.++. +++++|.+.++ ++||++||..+|+.... +++|+++..|.+.|+.+|.
T Consensus 89 ~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~-~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~ 167 (335)
T 1rpn_A 89 EVYNLAAQSFVGASWNQPVTTGVVDGLGVT-HLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKL 167 (335)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHH-HHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHH
T ss_pred EEEECccccchhhhhhChHHHHHHHHHHHH-HHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCCCCCChhHHHHH
Confidence 999999976544445678889999999996 99999999886 89999999999998765 8999999999999999999
Q ss_pred HHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHh
Q 022280 157 AAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 157 ~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~ 230 (300)
++|.+++.+ +.+++++||+++|||+............++.....+......++ ++.++|+|++|+|++++.+++
T Consensus 168 ~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~ 247 (335)
T 1rpn_A 168 YGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQ 247 (335)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHh
Confidence 999999875 56789999999999975321111112233444442332333444 468999999999999999998
Q ss_pred ccccccccccceeeecCCCccCHHHHHHh-----hcc-------------CCCCCccccChHHHHHhcCCCc-CCHHHHH
Q 022280 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAEV-----DRG-------------VQSPADISMDITKLVQTLNIDP-VTYKDGV 291 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~~~~s~~e~~~~-----~~~-------------~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l 291 (300)
++. + ++||+++++.+|+.|+++. ... ........+|++|++++|||+| ++++++|
T Consensus 248 ~~~--~----~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l 321 (335)
T 1rpn_A 248 QDK--A----DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELI 321 (335)
T ss_dssp SSS--C----CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHH
T ss_pred cCC--C----CEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCCCcCCCHHHHH
Confidence 753 1 3899999999999999881 110 1112345689999999999999 7999999
Q ss_pred HHHHhhhc
Q 022280 292 KLTLAAEA 299 (300)
Q Consensus 292 ~~~~~~~~ 299 (300)
+++++|+.
T Consensus 322 ~~~~~~~~ 329 (335)
T 1rpn_A 322 RMMVEADL 329 (335)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=312.35 Aligned_cols=284 Identities=23% Similarity=0.333 Sum_probs=223.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC--chhhhhhcC--CCceeEEEeecCCchhHHHHHHhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP--LPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~--~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|++|+|||||||||||++++++|+++|.. ++|++++|+.. ....+ ..+ ..++.++.+|++|++++.+++. +
T Consensus 1 M~~m~vlVTGatG~iG~~l~~~L~~~g~~-~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~ 75 (336)
T 2hun_A 1 MHSMKLLVTGGMGFIGSNFIRYILEKHPD-WEVINIDKLGYGSNPANL-KDLEDDPRYTFVKGDVADYELVKELVR---K 75 (336)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCGGGG-TTTTTCTTEEEEECCTTCHHHHHHHHH---T
T ss_pred CCCCeEEEECCCchHHHHHHHHHHHhCCC-CEEEEEecCcccCchhHH-hhhccCCceEEEEcCCCCHHHHHHHhh---C
Confidence 67789999999999999999999999633 78999988642 22222 112 3467889999999998888875 8
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC-CeEEEeeccccccCCC-CCCCCCCCCCCCChhHHH
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE-NLLIHLSTDQVYEGVK-SFYKEEDEIAPVNVYGKS 154 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~-~~~v~~SS~~~~~~~~-~~~~E~~~~~p~~~Y~~s 154 (300)
+|+|||||+......+..+++..+++|+.++. +++++|.+.+. ++|||+||..+||... .+++|+++..|.+.|+.|
T Consensus 76 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~-~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~s 154 (336)
T 2hun_A 76 VDGVVHLAAESHVDRSISSPEIFLHSNVIGTY-TLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSAT 154 (336)
T ss_dssp CSEEEECCCCCCHHHHHHCTHHHHHHHHHHHH-HHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCCCCCSHHHHH
T ss_pred CCEEEECCCCcChhhhhhCHHHHHHHHHHHHH-HHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCCCCCCccHHH
Confidence 99999999976543344577889999999996 99999998765 6999999999998764 489999998899999999
Q ss_pred HHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHH
Q 022280 155 KVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 155 K~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~ 228 (300)
|.++|.+++.+ +.+++++||+.+|||+.. +..+...++.... .+..+.++++ +.++|+|++|+|++++.+
T Consensus 155 K~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~ 230 (336)
T 2hun_A 155 KAASDMLVLGWTRTYNLNASITRCTNNYGPYQF---PEKLIPKTIIRAS-LGLKIPIYGTGKNVRDWLYVEDHVRAIELV 230 (336)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECEEESTTCC---TTSHHHHHHHHHH-TTCCEEEETC---CEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCC---cCchHHHHHHHHH-cCCCceEeCCCCceeeeEEHHHHHHHHHHH
Confidence 99999999875 457899999999999853 2233444554444 5666666554 678999999999999999
Q ss_pred HhccccccccccceeeecCCCccCHHHHHHh-----hcc----------CCCCCccccChHHHHHhcCCCc-CCHHHHHH
Q 022280 229 TNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV-----DRG----------VQSPADISMDITKLVQTLNIDP-VTYKDGVK 292 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~-----~~~----------~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~ 292 (300)
++.+. .+ ++||+++++.+|+.|+++. ... ......+.+|++|++++|||+| ++++++|+
T Consensus 231 ~~~~~-~g----~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~ 305 (336)
T 2hun_A 231 LLKGE-SR----EIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYTFDEGIK 305 (336)
T ss_dssp HHHCC-TT----CEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSSCHHHHHH
T ss_pred HhCCC-CC----CEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCCCCCHHHHHH
Confidence 98643 23 3999999999999999881 110 0111235689999999999999 89999999
Q ss_pred HHHhhhc
Q 022280 293 LTLAAEA 299 (300)
Q Consensus 293 ~~~~~~~ 299 (300)
++++||.
T Consensus 306 ~~~~~~~ 312 (336)
T 2hun_A 306 KTIDWYL 312 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999974
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=312.99 Aligned_cols=277 Identities=19% Similarity=0.135 Sum_probs=219.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|+||+|||||||||||++|+++|+++| + +.... ...+.++++|++|++++.++++.. ++|+|
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g---~------~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~~-~~d~V 65 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGA---G------LPGED--------WVFVSSKDADLTDTAQTRALFEKV-QPTHV 65 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTT---C------CTTCE--------EEECCTTTCCTTSHHHHHHHHHHS-CCSEE
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcC---C------ccccc--------ccccCceecccCCHHHHHHHHhhc-CCCEE
Confidence 678999999999999999999999999 5 11111 012334578999999999998865 79999
Q ss_pred EEcccccCc-cccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCC----CCCCCC-hhHH
Q 022280 81 VNCAALSVP-RVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEED----EIAPVN-VYGK 153 (300)
Q Consensus 81 ih~a~~~~~-~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~----~~~p~~-~Y~~ 153 (300)
||+|+.... ..+..++...+++|+.++. +++++|++.++++|||+||..+|+.... +++|++ ++.|.+ +|+.
T Consensus 66 ih~A~~~~~~~~~~~~~~~~~~~nv~gt~-~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~ 144 (319)
T 4b8w_A 66 IHLAAMVGGLFRNIKYNLDFWRKNVHMND-NVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSY 144 (319)
T ss_dssp EECCCCCCCHHHHTTCHHHHHHHHHHHHH-HHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHHHH
T ss_pred EECceecccccccccCHHHHHHHHHHHHH-HHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccCCCCCCcchHHH
Confidence 999998642 2345678889999999996 9999999999999999999999998765 899987 666666 6999
Q ss_pred HHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCC-CCCchHHHHHHH---HhcCCceeeccC--cccCceeHHHHHH
Q 022280 154 SKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPV-PKSLPIQWIDSV---LSKGEKVEFFHD--ECRCPVYVRDVVK 223 (300)
Q Consensus 154 sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~i~v~D~a~ 223 (300)
+|..+|++++.+ +.+++++||+++|||+..... ...+...++..+ ...+.++.++++ +.++|+|++|+|+
T Consensus 145 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ 224 (319)
T 4b8w_A 145 AKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQ 224 (319)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHH
Confidence 999999998764 557899999999999864322 223344445442 346677777664 6799999999999
Q ss_pred HHHHHHhccccccccccceeeecCCCccCHHHHHHh--------------hccCCCCCccccChHHHHHhcCCCc-CCHH
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV--------------DRGVQSPADISMDITKLVQTLNIDP-VTYK 288 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~--------------~~~~~~~~~~~~~~~k~~~~lg~~p-~~~~ 288 (300)
+++.+++++... .+++||+++++.+|+.|+++. ...........+|++|++++|||+| ++++
T Consensus 225 a~~~~~~~~~~~---~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~ 301 (319)
T 4b8w_A 225 LFIWVLREYNEV---EPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFK 301 (319)
T ss_dssp HHHHHHHHCCCS---SCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTSCCCCSCCCBCCHHHHHHCTTCCCCCHH
T ss_pred HHHHHHhccccC---CceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCCCcCcccccCCHHHHHHhcCCCCCCCHH
Confidence 999999884322 134999999999999999881 1112223456799999999999999 8999
Q ss_pred HHHHHHHhhhc
Q 022280 289 DGVKLTLAAEA 299 (300)
Q Consensus 289 ~~l~~~~~~~~ 299 (300)
++|+++++||.
T Consensus 302 ~~l~~~~~~~~ 312 (319)
T 4b8w_A 302 QAVKETCAWFT 312 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=311.89 Aligned_cols=282 Identities=21% Similarity=0.258 Sum_probs=222.6
Q ss_pred CC-CCeEEEEcCCccchHHHHHhhhhc--cCCCceeeecCCCCC--chhhhhhcCCCceeEEEeecCCchhHHHHHHhcC
Q 022280 1 MS-KKRVLVVGGTGYLGQHLLQGLSEI--EGKPYDVAATHHSTP--LPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 1 ~~-~~~ilItGatG~iG~~l~~~L~~~--g~~~~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
|+ ||+|||||||||||++|+++|+++ | ++|++++|+.. ....+......++.++.+|++|++++.++++
T Consensus 1 Ms~m~~vlVTGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--- 74 (348)
T 1oc2_A 1 MSQFKNIIVTGGAGFIGSNFVHYVYNNHPD---VHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA--- 74 (348)
T ss_dssp --CCSEEEEETTTSHHHHHHHHHHHHHCTT---CEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT---
T ss_pred CCcCcEEEEeCCccHHHHHHHHHHHHhCCC---CEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhh---
Confidence 44 689999999999999999999999 7 89999998753 1222221113567889999999988888877
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC-------------CCCCCC
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK-------------SFYKEE 142 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~-------------~~~~E~ 142 (300)
++|+|||||+......+..+++..+++|+.++. +++++|.+.++ +|||+||..+|+... .+++|+
T Consensus 75 ~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~-~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~ 152 (348)
T 1oc2_A 75 KADAIVHYAAESHNDNSLNDPSPFIHTNFIGTY-TLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAE 152 (348)
T ss_dssp TCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHH-HHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTT
T ss_pred cCCEEEECCcccCccchhhCHHHHHHHHHHHHH-HHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCC
Confidence 789999999976544344577889999999996 99999999888 999999999998652 578999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCce
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPV 216 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i 216 (300)
++..|.+.|+.+|..+|.+++.+ +.+++++||+.+|||+... ..+...++.... .+..+.+++ ++.++|+
T Consensus 153 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 228 (348)
T 1oc2_A 153 TNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI---EKFIPRQITNIL-AGIKPKLYGEGKNVRDWI 228 (348)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCT---TSHHHHHHHHHH-HTCCCEEETTSCCEEECE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCc---cchHHHHHHHHH-cCCCceEecCCCceEeeE
Confidence 98889999999999999998875 4578999999999998531 233444555544 455555554 3678999
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHh-----hcc----------CCCCCccccChHHHHHhcC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV-----DRG----------VQSPADISMDITKLVQTLN 281 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~-----~~~----------~~~~~~~~~~~~k~~~~lg 281 (300)
|++|+|++++.+++.+. .+ ++||+++++.+|+.|+++. ... ......+.+|++|++++||
T Consensus 229 ~v~Dva~~~~~~~~~~~-~g----~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 303 (348)
T 1oc2_A 229 HTNDHSTGVWAILTKGR-MG----ETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELG 303 (348)
T ss_dssp EHHHHHHHHHHHHHHCC-TT----CEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHC
T ss_pred EHHHHHHHHHHHhhCCC-CC----CeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccCHHHHHHHcC
Confidence 99999999999998643 23 3999999999999999881 110 0111335689999999999
Q ss_pred CCc-CC-HHHHHHHHHhhhc
Q 022280 282 IDP-VT-YKDGVKLTLAAEA 299 (300)
Q Consensus 282 ~~p-~~-~~~~l~~~~~~~~ 299 (300)
|+| ++ ++++|+++++|+.
T Consensus 304 ~~p~~~~~~~~l~~~~~~~~ 323 (348)
T 1oc2_A 304 WTPQFTDFSEGLEETIQWYT 323 (348)
T ss_dssp CCCSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHH
Confidence 999 77 9999999999874
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=316.67 Aligned_cols=293 Identities=20% Similarity=0.206 Sum_probs=225.8
Q ss_pred CCeEEEEcCCccchHHHHHhhh-hccCCCceeeecCCCCCc---------hhhhh---hcC-----CCc---eeEEEeec
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLS-EIEGKPYDVAATHHSTPL---------PQLLL---DAL-----PHS---FVFFDVDL 61 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~-~~g~~~~~v~~~~r~~~~---------~~~~~---~~~-----~~~---~~~~~~D~ 61 (300)
+|+|||||||||||++|+++|+ ++| ++|++++|+... ...+. ..+ ... +.++.+|+
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 78 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN---HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDV 78 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC---CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC---CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCC
Confidence 5799999999999999999999 999 899999987543 22221 111 123 77899999
Q ss_pred CCchhHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC-----
Q 022280 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK----- 136 (300)
Q Consensus 62 ~~~~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~----- 136 (300)
+|++++..+++.++++|+|||||+......+..+++..+++|+.++. +++++|.+.++++|||+||.++|+...
T Consensus 79 ~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~-~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~ 157 (397)
T 1gy8_A 79 RNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGIL-RLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVS 157 (397)
T ss_dssp TCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHH-HHHHHHHHTTCCEEEEEEEGGGTBSCCC----
T ss_pred CCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHH-HHHHHHHHhCCCEEEEECCHHHhCCCCccccc
Confidence 99999998888774599999999976543344577889999999996 999999999999999999999998765
Q ss_pred ---CCCCCCCCCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCC------CCCCchHHHH----HHHH
Q 022280 137 ---SFYKEEDEIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISP------VPKSLPIQWI----DSVL 199 (300)
Q Consensus 137 ---~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~------~~~~~~~~~~----~~~~ 199 (300)
.+++|+++..|.+.|+.||.++|.+++.+ +.+++++||+++|||+.... .+..+...++ ....
T Consensus 158 ~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
T 1gy8_A 158 TNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIA 237 (397)
T ss_dssp -CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHS
T ss_pred ccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHH
Confidence 48999999889999999999999998875 45789999999999974211 1223333222 1322
Q ss_pred hcC-----------Cceeecc--------CcccCceeHHHHHHHHHHHHhccccccc-ccc---ceeeecCCCccCHHHH
Q 022280 200 SKG-----------EKVEFFH--------DECRCPVYVRDVVKIILALTNRWLSEDK-QMQ---LLLNVGGPDRVSRVQM 256 (300)
Q Consensus 200 ~~~-----------~~~~~~~--------~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~---~i~ni~~~~~~s~~e~ 256 (300)
.+. ..+.++| ++.++|+|++|+|++++.+++++...+. ... ++||+++++.+|+.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~ 317 (397)
T 1gy8_A 238 PDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREV 317 (397)
T ss_dssp CC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHH
T ss_pred hcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHHHH
Confidence 222 2455554 4678999999999999999987543220 002 4999999999999999
Q ss_pred HHh-----h---------ccCCCCCccccChHHHHHhcCCCc-C-CHHHHHHHHHhhhc
Q 022280 257 AEV-----D---------RGVQSPADISMDITKLVQTLNIDP-V-TYKDGVKLTLAAEA 299 (300)
Q Consensus 257 ~~~-----~---------~~~~~~~~~~~~~~k~~~~lg~~p-~-~~~~~l~~~~~~~~ 299 (300)
++. . .....+....+|++|++++|||+| + +++++|+++++|+.
T Consensus 318 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~ 376 (397)
T 1gy8_A 318 IEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQR 376 (397)
T ss_dssp HHHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeeeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHH
Confidence 881 0 011223456789999999999999 6 99999999999985
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=305.70 Aligned_cols=268 Identities=22% Similarity=0.321 Sum_probs=222.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|||||||||||++++++|+ +| ++|++++|++. ++.+|++|++++.++++.. ++|+|||+
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g---~~V~~~~r~~~--------------~~~~D~~d~~~~~~~~~~~-~~d~vih~ 61 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PV---GNLIALDVHSK--------------EFCGDFSNPKGVAETVRKL-RPDVIVNA 61 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TT---SEEEEECTTCS--------------SSCCCTTCHHHHHHHHHHH-CCSEEEEC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cC---CeEEEeccccc--------------cccccCCCHHHHHHHHHhc-CCCEEEEC
Confidence 589999999999999999999 89 89999998752 2578999999888888754 69999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
|+......+..+++..+++|+.++. +++++|++.++ +|||+||..+|+.... +++|+++..|.+.|+.+|..+|+++
T Consensus 62 a~~~~~~~~~~~~~~~~~~n~~~~~-~l~~a~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~ 139 (299)
T 1n2s_A 62 AAHTAVDKAESEPELAQLLNATSVE-AIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKAL 139 (299)
T ss_dssp CCCCCHHHHTTCHHHHHHHHTHHHH-HHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHHH
T ss_pred cccCCHhhhhcCHHHHHHHHHHHHH-HHHHHHHHcCC-cEEEEecccEEeCCCCCCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 9976544455678889999999996 99999999888 8999999999998765 8999999999999999999999999
Q ss_pred HHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccce
Q 022280 163 YEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLL 242 (300)
Q Consensus 163 ~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i 242 (300)
+.++.+++++||+.+|||+.. .+...++.. ...+..+...+++.++|+|++|+|++++.+++++.... ..+++
T Consensus 140 ~~~~~~~~ilRp~~v~G~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~-~~~~~ 212 (299)
T 1n2s_A 140 QDNCPKHLIFRTSWVYAGKGN-----NFAKTMLRL-AKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKP-EVAGL 212 (299)
T ss_dssp HHHCSSEEEEEECSEECSSSC-----CHHHHHHHH-HHHCSEEEEECSCEECCEEHHHHHHHHHHHHHHHHHCG-GGCEE
T ss_pred HHhCCCeEEEeeeeecCCCcC-----cHHHHHHHH-HhcCCCEEeecCcccCCeeHHHHHHHHHHHHHHhcccc-ccCce
Confidence 999989999999999999753 233334433 33567777778888999999999999999998752100 01239
Q ss_pred eeecCCCccCHHHHHH-------hh-------c-c----------CCCCCccccChHHHHHhcCCCcCCHHHHHHHHHhh
Q 022280 243 LNVGGPDRVSRVQMAE-------VD-------R-G----------VQSPADISMDITKLVQTLNIDPVTYKDGVKLTLAA 297 (300)
Q Consensus 243 ~ni~~~~~~s~~e~~~-------~~-------~-~----------~~~~~~~~~~~~k~~~~lg~~p~~~~~~l~~~~~~ 297 (300)
||+++++.+|+.|+++ .. . . ...+....+|++|++++|||+|.+++++|+++++|
T Consensus 213 ~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~l~~~~~~ 292 (299)
T 1n2s_A 213 YHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQWELGVKRMLTE 292 (299)
T ss_dssp EECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCCBHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 9999999999999888 11 0 0 01234567899999999999998899999999999
Q ss_pred hc
Q 022280 298 EA 299 (300)
Q Consensus 298 ~~ 299 (300)
|.
T Consensus 293 ~~ 294 (299)
T 1n2s_A 293 MF 294 (299)
T ss_dssp HH
T ss_pred HH
Confidence 85
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=316.69 Aligned_cols=275 Identities=17% Similarity=0.161 Sum_probs=220.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++|+|||||||||||++|+++|+++| ++|++++|+++. .++.++.+|++|++++..+++ ++|+||
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~---------~~~~~~~~Dl~d~~~~~~~~~---~~d~vi 82 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQG---RTVRGFDLRPSG---------TGGEEVVGSLEDGQALSDAIM---GVSAVL 82 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTT---CCEEEEESSCCS---------SCCSEEESCTTCHHHHHHHHT---TCSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCC---CEEEEEeCCCCC---------CCccEEecCcCCHHHHHHHHh---CCCEEE
Confidence 46899999999999999999999999 899999998654 356678999999998888887 899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCC--C-CCCCCCCCCCCCChhHHHHHHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV--K-SFYKEEDEIAPVNVYGKSKVAA 158 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~--~-~~~~E~~~~~p~~~Y~~sK~~~ 158 (300)
|+|+...... ...+..+++|+.++. +++++|.+.++++|||+||..+|+.. . .+++|+++..|.+.|+.+|.++
T Consensus 83 h~A~~~~~~~--~~~~~~~~~nv~~~~-~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~Y~~sK~~~ 159 (347)
T 4id9_A 83 HLGAFMSWAP--ADRDRMFAVNVEGTR-RLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLG 159 (347)
T ss_dssp ECCCCCCSSG--GGHHHHHHHHTHHHH-HHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTSCCCCCSHHHHHHHHH
T ss_pred ECCcccCcch--hhHHHHHHHHHHHHH-HHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCCCCCCCChHHHHHHHH
Confidence 9999765432 234788999999996 99999999999999999999999983 3 3899999999999999999999
Q ss_pred HHHHHHH----cCCceeEeeeeee-------------CCCCCCCC--------CCCchHHHHHHHHhcCCceeecc--Cc
Q 022280 159 EKFIYEK----CSNFAILRSSIIY-------------GPQTISPV--------PKSLPIQWIDSVLSKGEKVEFFH--DE 211 (300)
Q Consensus 159 e~~~~~~----~~~~~ilR~~~v~-------------G~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~ 211 (300)
|++++.+ +.+++++||+.+| ||+..... ...+...++.. ...+.++.+++ ++
T Consensus 160 E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 238 (347)
T 4id9_A 160 EELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQS-RDIGEPSHILARNEN 238 (347)
T ss_dssp HHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHH-HCCSSCCEEEEECTT
T ss_pred HHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHH-HHcCCCeEEeCCCCc
Confidence 9999865 4578999999999 66532100 01222233333 33556656654 46
Q ss_pred ccCc----eeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhh-----------ccCCCCCccccChHHH
Q 022280 212 CRCP----VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD-----------RGVQSPADISMDITKL 276 (300)
Q Consensus 212 ~~~~----i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~-----------~~~~~~~~~~~~~~k~ 276 (300)
.++| +|++|+|++++.+++++...++ +||+++++.+|+.|+++.. .....+....+|++|+
T Consensus 239 ~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~----~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~d~~k~ 314 (347)
T 4id9_A 239 GRPFRMHITDTRDMVAGILLALDHPEAAGG----TFNLGADEPADFAALLPKIAALTGLPIVTVDFPGDGVYYHTSNERI 314 (347)
T ss_dssp CCBCEECEEEHHHHHHHHHHHHHCGGGTTE----EEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSCCCBCCBCCHHH
T ss_pred ccCCccCcEeHHHHHHHHHHHhcCcccCCC----eEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCcccccccCHHHH
Confidence 7899 9999999999999998754444 9999999999999999811 1122233677899999
Q ss_pred HHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 277 VQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 277 ~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
+++|||+| ++++++|+++++|+.
T Consensus 315 ~~~lG~~p~~~~~~~l~~~~~~~~ 338 (347)
T 4id9_A 315 RNTLGFEAEWTMDRMLEEAATARR 338 (347)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99999999 799999999999974
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=308.86 Aligned_cols=287 Identities=20% Similarity=0.204 Sum_probs=218.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc----hhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL----PQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|+|||||||||||++++++|+++| ++|++++|.... ...+....+..+.++.+|++|++++.++++.. ++|+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~D~ 76 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDH-AIDT 76 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHT-TCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhcc-CCCE
Confidence 589999999999999999999999 899988764322 11111111345677899999999988888765 7999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCC-CChhHHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAP-VNVYGKSKVA 157 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p-~~~Y~~sK~~ 157 (300)
||||||..........+...+++|+.++. +++++|++.++++||++||..+|+.... +++|+++..| .+.|+.||.+
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~ 155 (338)
T 1udb_A 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTL-RLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLM 155 (338)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHHHHHH-HHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHH
T ss_pred EEECCccCccccchhcHHHHHHHHHHHHH-HHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHH
Confidence 99999976443334567788999999996 9999999889999999999999987554 7889887755 7899999999
Q ss_pred HHHHHHHHc-----CCceeEeeeeeeCCCCC---CCC----CCCchHHHHHHHHh-cCCceeecc--------CcccCce
Q 022280 158 AEKFIYEKC-----SNFAILRSSIIYGPQTI---SPV----PKSLPIQWIDSVLS-KGEKVEFFH--------DECRCPV 216 (300)
Q Consensus 158 ~e~~~~~~~-----~~~~ilR~~~v~G~~~~---~~~----~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~i 216 (300)
+|.+++.++ .+++++||+++|||+.. ... +..+.. ++..... ....+.+++ ++.++|+
T Consensus 156 ~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 234 (338)
T 1udb_A 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMP-YIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234 (338)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHH-HHHHHHHTSSSCEEEECSCSSSSSSSCEECEE
T ss_pred HHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHH-HHHHHHHhcCCCcEEecCcccCCCCceeeeeE
Confidence 999998753 46799999999998531 111 122333 3333333 344454443 3578999
Q ss_pred eHHHHHHHHHHHHhccc-cccccccceeeecCCCccCHHHHHHh-----h---------ccCCCCCccccChHHHHHhcC
Q 022280 217 YVRDVVKIILALTNRWL-SEDKQMQLLLNVGGPDRVSRVQMAEV-----D---------RGVQSPADISMDITKLVQTLN 281 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~-~~~~~~~~i~ni~~~~~~s~~e~~~~-----~---------~~~~~~~~~~~~~~k~~~~lg 281 (300)
|++|+|++++.+++... ..+ .++||+++++.+|+.|+++. . ..........+|++|++++||
T Consensus 235 ~v~Dva~a~~~~l~~~~~~~~---~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 311 (338)
T 1udb_A 235 HVMDLADGHVVAMEKLANKPG---VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELN 311 (338)
T ss_dssp EHHHHHHHHHHHHHHHTTCCE---EEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHC
T ss_pred EHHHHHHHHHHHHhhhhccCC---CcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCCCCchhhhhcCHHHHHHHcC
Confidence 99999999999998642 111 23999999999999999881 0 011123456789999999999
Q ss_pred CCc-CCHHHHHHHHHhhhc
Q 022280 282 IDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 282 ~~p-~~~~~~l~~~~~~~~ 299 (300)
|+| ++++++|+++++|+.
T Consensus 312 ~~p~~~l~~~l~~~~~w~~ 330 (338)
T 1udb_A 312 WRVTRTLDEMAQDTWHWQS 330 (338)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHH
Confidence 999 899999999999984
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=303.65 Aligned_cols=261 Identities=21% Similarity=0.308 Sum_probs=219.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
.|+|||||||||||++|+++|+++| ++|++++|+ ++|++|++++.++++.. ++|+|||
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~------------------~~Dl~d~~~~~~~~~~~-~~d~vih 69 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKN---VEVIPTDVQ------------------DLDITNVLAVNKFFNEK-KPNVVIN 69 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSS---EEEEEECTT------------------TCCTTCHHHHHHHHHHH-CCSEEEE
T ss_pred cceEEEECCCChHHHHHHHHHHhCC---CeEEeccCc------------------cCCCCCHHHHHHHHHhc-CCCEEEE
Confidence 3789999999999999999999999 899999885 37999999888888765 7999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
||+......+..+++..+++|+.++. +++++|.+.++ +|||+||..+|+.... +++|+++..|.+.|+.+|..+|.+
T Consensus 70 ~A~~~~~~~~~~~~~~~~~~nv~~~~-~l~~a~~~~~~-~iv~~SS~~v~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~ 147 (292)
T 1vl0_A 70 CAAHTAVDKCEEQYDLAYKINAIGPK-NLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENF 147 (292)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHTHHHH-HHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred CCccCCHHHHhcCHHHHHHHHHHHHH-HHHHHHHHcCC-eEEEechHHeECCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Confidence 99976544345678889999999996 99999999888 9999999999998764 899999999999999999999999
Q ss_pred HHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccc
Q 022280 162 IYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQL 241 (300)
Q Consensus 162 ~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~ 241 (300)
++.++.+++++||+.+||| .. .+...++.. ...+..+...+++.++|+|++|+|++++.+++++ . ++
T Consensus 148 ~~~~~~~~~~lR~~~v~G~-~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~--~----~~ 214 (292)
T 1vl0_A 148 VKALNPKYYIVRTAWLYGD-GN-----NFVKTMINL-GKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEK--N----YG 214 (292)
T ss_dssp HHHHCSSEEEEEECSEESS-SS-----CHHHHHHHH-HHHCSEEEEESSCEECCEEHHHHHHHHHHHHHHT--C----CE
T ss_pred HHhhCCCeEEEeeeeeeCC-Cc-----ChHHHHHHH-HhcCCcEEeecCeeeCCccHHHHHHHHHHHHhcC--C----Cc
Confidence 9999999999999999998 21 223333333 3356677777888899999999999999999885 2 33
Q ss_pred eeeecCCCccCHHHHHH-----hhc--------------cCCCCCccccChHHHHHhcCCCcCCHHHHHHHHHhhhcC
Q 022280 242 LLNVGGPDRVSRVQMAE-----VDR--------------GVQSPADISMDITKLVQTLNIDPVTYKDGVKLTLAAEAT 300 (300)
Q Consensus 242 i~ni~~~~~~s~~e~~~-----~~~--------------~~~~~~~~~~~~~k~~~~lg~~p~~~~~~l~~~~~~~~~ 300 (300)
+||+++++.+|+.|+++ ... ....+....+|++|++++|||+|.+++++|+++++||.+
T Consensus 215 ~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~l~~~~~~~~~ 292 (292)
T 1vl0_A 215 TFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITREWKESLKEYIDLLQM 292 (292)
T ss_dssp EEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHHHHHHTC
T ss_pred EEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999988 000 011234567999999999999999999999999999863
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=311.02 Aligned_cols=288 Identities=20% Similarity=0.285 Sum_probs=221.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhhhcC--CCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
||+|||||||||||++|+++|+++| ++|++++|+.. ........+ ..++.++.+|++|++++..+++.. ++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 76 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQG---IDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKY-MPDS 76 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCC---CEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhcc-CCCE
Confidence 5799999999999999999999999 89999988532 221111111 235778999999999999888854 6999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEeeccccccCCCC-----------------CCCC
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLSTDQVYEGVKS-----------------FYKE 141 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~-----------------~~~E 141 (300)
|||+|+......+..+++..+++|+.++. +++++|.+.+++ +||++||.++|+.... +++|
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~nv~~~~-~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e 155 (347)
T 1orr_A 77 CFHLAGQVAMTTSIDNPCMDFEINVGGTL-NLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDE 155 (347)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHH-HHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCT
T ss_pred EEECCcccChhhhhhCHHHHHHHHHHHHH-HHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccc
Confidence 99999976543344577889999999996 999999998885 9999999999987532 2677
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC----ceeecc--Cc
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE----KVEFFH--DE 211 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~ 211 (300)
+++..|.+.|+.+|.++|.+++.+ +.+++++||+.||||+............++...+.+.. ++..++ ++
T Consensus 156 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~ 235 (347)
T 1orr_A 156 STQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQ 235 (347)
T ss_dssp TSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCC
T ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecCCcc
Confidence 777778899999999999999876 45889999999999975432222234445555543332 455555 46
Q ss_pred ccCceeHHHHHHHHHHHHhc-cccccccccceeeecCCC--ccCHHHHHH-----hhc---------cCCCCCccccChH
Q 022280 212 CRCPVYVRDVVKIILALTNR-WLSEDKQMQLLLNVGGPD--RVSRVQMAE-----VDR---------GVQSPADISMDIT 274 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~-~~~~~~~~~~i~ni~~~~--~~s~~e~~~-----~~~---------~~~~~~~~~~~~~ 274 (300)
.++|+|++|+|++++.++++ ....++ +||+++++ .+|+.|+++ ... .........+|++
T Consensus 236 ~~~~i~v~Dva~a~~~~~~~~~~~~g~----~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~ 311 (347)
T 1orr_A 236 VRDVLHAEDMISLYFTALANVSKIRGN----AFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIK 311 (347)
T ss_dssp EEECEEHHHHHHHHHHHHHTHHHHTTC----EEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCH
T ss_pred eEeeEEHHHHHHHHHHHHhccccCCCC----EEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCCCCCcceeecCHH
Confidence 78999999999999999985 223334 99999987 499999888 110 1112234578999
Q ss_pred HHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 275 KLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 275 k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
|++++|||+| ++++++|+++++|+.
T Consensus 312 k~~~~lG~~p~~~~~e~l~~~~~~~~ 337 (347)
T 1orr_A 312 KITNAIDWSPKVSAKDGVQKMYDWTS 337 (347)
T ss_dssp HHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCccCCHHHHHHHHHHHHH
Confidence 9999999999 899999999999974
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=307.72 Aligned_cols=262 Identities=19% Similarity=0.203 Sum_probs=212.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|+||+||||| +||||++|++.|+++| ++|+++.|+++.. +.++.++.+|++|++++..+++. ++|+|
T Consensus 1 M~~~~ilVtG-aG~iG~~l~~~L~~~g---~~V~~~~r~~~~~-------~~~~~~~~~Dl~d~~~~~~~~~~--~~d~v 67 (286)
T 3gpi_A 1 MSLSKILIAG-CGDLGLELARRLTAQG---HEVTGLRRSAQPM-------PAGVQTLIADVTRPDTLASIVHL--RPEIL 67 (286)
T ss_dssp -CCCCEEEEC-CSHHHHHHHHHHHHTT---CCEEEEECTTSCC-------CTTCCEEECCTTCGGGCTTGGGG--CCSEE
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHHCC---CEEEEEeCCcccc-------ccCCceEEccCCChHHHHHhhcC--CCCEE
Confidence 7789999999 5999999999999999 8999999986542 35678899999999988877762 59999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAE 159 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e 159 (300)
||+|+... .++...+++|+.++. +++++|++.++++|||+||..+|+.... +++|+++..|.+.|+.+|..+|
T Consensus 68 ih~a~~~~-----~~~~~~~~~n~~~~~-~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 141 (286)
T 3gpi_A 68 VYCVAASE-----YSDEHYRLSYVEGLR-NTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEAE 141 (286)
T ss_dssp EECHHHHH-----HC-----CCSHHHHH-HHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTTSCCCCCSHHHHHHHHHH
T ss_pred EEeCCCCC-----CCHHHHHHHHHHHHH-HHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCCCCCCCCChhhHHHHHHH
Confidence 99998642 356778899999996 9999999999999999999999998775 7899999999999999999999
Q ss_pred HHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcc--ccccc
Q 022280 160 KFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW--LSEDK 237 (300)
Q Consensus 160 ~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~--~~~~~ 237 (300)
++ +++ .+++++||+.+|||+.. .++..+. . ......+++.++|+|++|+|++++.+++++ ...
T Consensus 142 ~~-~~~-~~~~ilR~~~v~G~~~~---------~~~~~~~-~-~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~-- 206 (286)
T 3gpi_A 142 AL-LAA-YSSTILRFSGIYGPGRL---------RMIRQAQ-T-PEQWPARNAWTNRIHRDDGAAFIAYLIQQRSHAVP-- 206 (286)
T ss_dssp HH-GGG-SSEEEEEECEEEBTTBC---------HHHHHTT-C-GGGSCSSBCEECEEEHHHHHHHHHHHHHHHTTSCC--
T ss_pred HH-Hhc-CCeEEEecccccCCCch---------hHHHHHH-h-cccCCCcCceeEEEEHHHHHHHHHHHHhhhccCCC--
Confidence 99 777 89999999999999753 2333333 3 322233456889999999999999999985 222
Q ss_pred cccceeeecCCCccCHHHHHHh-----h------ccCCCCCccccChHHHHHhcCCCc-C-CHHHHHHHHHhhhc
Q 022280 238 QMQLLLNVGGPDRVSRVQMAEV-----D------RGVQSPADISMDITKLVQTLNIDP-V-TYKDGVKLTLAAEA 299 (300)
Q Consensus 238 ~~~~i~ni~~~~~~s~~e~~~~-----~------~~~~~~~~~~~~~~k~~~~lg~~p-~-~~~~~l~~~~~~~~ 299 (300)
+++||+++++.+|+.|+++. . .......+..+|++|++ +|||+| + +|+++|+++++|+.
T Consensus 207 --~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~d~~k~~-~lG~~p~~~~l~e~l~~~~~~~~ 278 (286)
T 3gpi_A 207 --ERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATPPVQGNKKLSNARLL-ASGYQLIYPDYVSGYGALLAAMR 278 (286)
T ss_dssp --CSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCCCBCSSCEECCHHHH-HTTCCCSSCSHHHHHHHHHHHHT
T ss_pred --CceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCcccCCCeEeeHHHHH-HcCCCCcCCcHHHHHHHHHHHHh
Confidence 34999999999999999981 1 11122456779999997 899999 6 79999999999864
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=304.20 Aligned_cols=276 Identities=28% Similarity=0.434 Sum_probs=195.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
|+|+|||||||||||++++++|+++| ++|++++|+.+. ++ ++.+|++|++++.++++.. ++|+||
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~---------~~--~~~~Dl~d~~~~~~~~~~~-~~d~vi 65 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNN---WHAVGCGFRRAR---------PK--FEQVNLLDSNAVHHIIHDF-QPHVIV 65 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEC-----------------------------CHHHHHHH-CCSEEE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCC---CeEEEEccCCCC---------CC--eEEecCCCHHHHHHHHHhh-CCCEEE
Confidence 36899999999999999999999999 899999987543 11 5789999999888888755 799999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
|||+......+..+++..+++|+.++. +++++|.+.++ +|||+||..+|+....+++|+++..|.+.|+.+|..+|.+
T Consensus 66 h~A~~~~~~~~~~~~~~~~~~n~~~~~-~l~~a~~~~~~-~~v~~SS~~v~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~ 143 (315)
T 2ydy_A 66 HCAAERRPDVVENQPDAASQLNVDASG-NLAKEAAAVGA-FLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKA 143 (315)
T ss_dssp ECC-------------------CHHHH-HHHHHHHHHTC-EEEEEEEGGGSCSSSCSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred ECCcccChhhhhcCHHHHHHHHHHHHH-HHHHHHHHcCC-eEEEEchHHHcCCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 999986554445677889999999996 99999999887 9999999999998666899999999999999999999999
Q ss_pred HHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh-cCCceeeccCcccCceeHHHHHHHHHHHHhcccccccccc
Q 022280 162 IYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLS-KGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQ 240 (300)
Q Consensus 162 ~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~ 240 (300)
++.++.+++++||+.|||++.... ..+...++. .+. .+..+.+.+++.++|+|++|+|++++.++++.... ...+
T Consensus 144 ~~~~~~~~~~lR~~~v~G~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~ 219 (315)
T 2ydy_A 144 VLENNLGAAVLRIPILYGEVEKLE--ESAVTVMFD-KVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLD-PSIK 219 (315)
T ss_dssp HHHHCTTCEEEEECSEECSCSSGG--GSTTGGGHH-HHHCCSSCEEEECSSBBCCEEHHHHHHHHHHHHHHHHTC-TTCC
T ss_pred HHHhCCCeEEEeeeeeeCCCCccc--ccHHHHHHH-HHHhcCCCeeeccCceECcEEHHHHHHHHHHHHHhhccc-cCCC
Confidence 999999999999999999975411 011222232 333 45556666778899999999999999999874100 0123
Q ss_pred ceeeecCCCccCHHHHHHh-----hcc--------------CCCCCccccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 241 LLLNVGGPDRVSRVQMAEV-----DRG--------------VQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 241 ~i~ni~~~~~~s~~e~~~~-----~~~--------------~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
++||+++++.+|+.|+++. ... ...+.+..+|++|++++ ||+| ++++++|+++++||.
T Consensus 220 ~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~~~~ 297 (315)
T 2ydy_A 220 GTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL-GIGQRTPFRIGIKESLWPFL 297 (315)
T ss_dssp EEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT-TCCCCCCHHHHHHHHHGGGC
T ss_pred CeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc-CCCCCCCHHHHHHHHHHHHc
Confidence 4999999999999999881 000 11234567899999888 9999 899999999999985
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=306.07 Aligned_cols=282 Identities=20% Similarity=0.304 Sum_probs=223.9
Q ss_pred CeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCC--CchhhhhhcC-CCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHST--PLPQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~--~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|+|||||||||||++|+++|+++ | ++|++++|+. .....+.+.. ..++.++.+|++|++++.++++.. ++|+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 76 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQ---DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQY-QPDA 76 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS---CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCC---CeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhc-CCCE
Confidence 57999999999999999999998 7 8999999864 2222221111 346788999999999988888765 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhc--cCC-------eEEEeeccccccCCCC-----------CC
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN--KEN-------LLIHLSTDQVYEGVKS-----------FY 139 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~-------~~v~~SS~~~~~~~~~-----------~~ 139 (300)
|||||+......+..+++..+++|+.++. +++++|.+. +++ +||++||.++|+.... ++
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~-~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~ 155 (361)
T 1kew_A 77 VMHLAAESHVDRSITGPAAFIETNIVGTY-ALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLF 155 (361)
T ss_dssp EEECCSCCCHHHHHHCTHHHHHHHTHHHH-HHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCB
T ss_pred EEECCCCcChhhhhhCHHHHHHHHHHHHH-HHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCC
Confidence 99999976543344577889999999996 999999987 876 9999999999987542 78
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--ccc
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECR 213 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 213 (300)
+|+++..|.+.|+.||.++|.+++.+ +.+++++||+.||||+.. +..+...++.... .+..+.++++ +.+
T Consensus 156 ~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 231 (361)
T 1kew_A 156 TETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF---PEKLIPLVILNAL-EGKPLPIYGKGDQIR 231 (361)
T ss_dssp CTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC---TTSHHHHHHHHHH-HTCCEEEETTSCCEE
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCC---cccHHHHHHHHHH-cCCCceEcCCCceeE
Confidence 99998889999999999999998875 568899999999999853 2233444555444 4555666554 678
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH-------hhcc------------CC---CCCcccc
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-------VDRG------------VQ---SPADISM 271 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-------~~~~------------~~---~~~~~~~ 271 (300)
+|+|++|+|++++++++.+. .++ +||+++++.+|+.|+++ .... .. ....+.+
T Consensus 232 ~~i~v~Dva~a~~~~~~~~~-~g~----~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 306 (361)
T 1kew_A 232 DWLYVEDHARALHMVVTEGK-AGE----TYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAI 306 (361)
T ss_dssp EEEEHHHHHHHHHHHHHHCC-TTC----EEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCB
T ss_pred eeEEHHHHHHHHHHHHhCCC-CCC----EEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecCCCCcccceeec
Confidence 99999999999999998743 233 99999999999999887 1100 01 1123568
Q ss_pred ChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 272 DITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 272 ~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
|++|++++|||+| ++++++|+++++|+.
T Consensus 307 d~~k~~~~lG~~p~~~~~e~l~~~~~~~~ 335 (361)
T 1kew_A 307 DAGKISRELGWKPLETFESGIRKTVEWYL 335 (361)
T ss_dssp CCHHHHHHHCCCCSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 9999999999999 899999999999874
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=305.02 Aligned_cols=288 Identities=17% Similarity=0.095 Sum_probs=222.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh-hhhhcC--CCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ-LLLDAL--PHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~-~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
|++|+|||||||||||++++++|+++| ++|++++|+++... ...... ..++.++.+|++|++++.++++.. ++
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~ 76 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKG---YEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKV-QP 76 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHH-CC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhc-CC
Confidence 678999999999999999999999999 89999999865432 111222 235778899999999999888866 79
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC-CeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHH
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE-NLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSK 155 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~-~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK 155 (300)
|+|||||+......+..+++..+++|+.++. +++++|.+.++ ++||++||.++||.... +++|+++..|.+.|+.||
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~-~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~~~~~Y~~sK 155 (345)
T 2z1m_A 77 DEVYNLAAQSFVGVSFEQPILTAEVDAIGVL-RILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAK 155 (345)
T ss_dssp SEEEECCCCCCHHHHTTSHHHHHHHHTHHHH-HHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHH
T ss_pred CEEEECCCCcchhhhhhCHHHHHHHHHHHHH-HHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCCCCCChhHHHH
Confidence 9999999986544445678889999999996 99999998886 79999999999998765 889999988999999999
Q ss_pred HHHHHHHHHHc----CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHH
Q 022280 156 VAAEKFIYEKC----SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALT 229 (300)
Q Consensus 156 ~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~ 229 (300)
.++|.+++.++ .+++++|+.++|||+............++.....+.......+ .+.++|+|++|+|+++++++
T Consensus 156 ~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~ 235 (345)
T 2z1m_A 156 LFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMM 235 (345)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHH
Confidence 99999988764 4668899999999985321100111122333332222232344 35789999999999999999
Q ss_pred hccccccccccceeeecCCCccCHHHHHH-----hhcc------------------------------CCCCCccccChH
Q 022280 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRG------------------------------VQSPADISMDIT 274 (300)
Q Consensus 230 ~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~------------------------------~~~~~~~~~~~~ 274 (300)
+++.. ++||+++++.+|+.|+++ .... ........+|++
T Consensus 236 ~~~~~------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 309 (345)
T 2z1m_A 236 QQPEP------DDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPE 309 (345)
T ss_dssp TSSSC------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCH
T ss_pred hCCCC------ceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCcceeecCHH
Confidence 87431 389999999999999988 1100 001123457999
Q ss_pred HHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 275 KLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 275 k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
|++++|||+| ++++++|+++++|+.
T Consensus 310 k~~~~lG~~p~~~~~~~l~~~~~~~~ 335 (345)
T 2z1m_A 310 KAMKKLGWKPRTTFDELVEIMMEADL 335 (345)
T ss_dssp HHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999 899999999999974
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=302.59 Aligned_cols=283 Identities=20% Similarity=0.264 Sum_probs=221.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhc---cCCCceeeecCCCCC--chhhhhhc-CCCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEI---EGKPYDVAATHHSTP--LPQLLLDA-LPHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~---g~~~~~v~~~~r~~~--~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
|+|||||||||||++|+++|+++ |...++|++++|+.. ....+... ...++.++.+|++|++++.+++. ++
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~ 77 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR---GV 77 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT---TC
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhc---CC
Confidence 58999999999999999999996 410047888888642 12222111 13467889999999988777764 89
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC-CCCCCCCCCCCCChhHHHHH
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK-SFYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~-~~~~E~~~~~p~~~Y~~sK~ 156 (300)
|+|||||+......+..+++..+++|+.++. +++++|.+.++++|||+||.++|+... .+++|+++..|.+.|+.||.
T Consensus 78 d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~-~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~ 156 (337)
T 1r6d_A 78 DAIVHFAAESHVDRSIAGASVFTETNVQGTQ-TLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKA 156 (337)
T ss_dssp CEEEECCSCCCHHHHHHCCHHHHHHHTHHHH-HHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHHH
T ss_pred CEEEECCCccCchhhhhCHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCCCCCCCCCchHHHHH
Confidence 9999999976543344567889999999996 999999999999999999999998764 48899999889999999999
Q ss_pred HHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHh
Q 022280 157 AAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 157 ~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~ 230 (300)
++|.+++.+ +.+++++||+.+|||+.. +..+...++.... .+..+.++++ +.++|+|++|+|++++.+++
T Consensus 157 ~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 232 (337)
T 1r6d_A 157 GSDLVARAYHRTYGLDVRITRCCNNYGPYQH---PEKLIPLFVTNLL-DGGTLPLYGDGANVREWVHTDDHCRGIALVLA 232 (337)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECEEECTTCC---TTSHHHHHHHHHH-TTCCEEEETTSCCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEeeeeECCCCC---CCChHHHHHHHHh-cCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHh
Confidence 999998765 458999999999999853 2233444555444 5566666554 67899999999999999998
Q ss_pred ccccccccccceeeecCCCccCHHHHHH-----hhcc-------C---CCCCccccChHHHHHhcCCCc-CCHHHHHHHH
Q 022280 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRG-------V---QSPADISMDITKLVQTLNIDP-VTYKDGVKLT 294 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~-------~---~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~ 294 (300)
.+. .+ ++||+++++.+|+.|+++ .... . .....+.+|++|++++|||+| ++++++|+++
T Consensus 233 ~~~-~g----~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~ 307 (337)
T 1r6d_A 233 GGR-AG----EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLART 307 (337)
T ss_dssp HCC-TT----CEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHH
T ss_pred CCC-CC----CEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 743 22 399999999999999887 1110 0 111235689999999999999 8999999999
Q ss_pred Hhhhc
Q 022280 295 LAAEA 299 (300)
Q Consensus 295 ~~~~~ 299 (300)
++||.
T Consensus 308 ~~~~~ 312 (337)
T 1r6d_A 308 VRWYR 312 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99974
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=308.39 Aligned_cols=285 Identities=16% Similarity=0.097 Sum_probs=221.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-----hhhhhhc----CCCceeEEEeecCCchhHHHHHHhc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-----PQLLLDA----LPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-----~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
|+|||||||||||++++++|+++| ++|++++|+++. ...+... ...++.++.+|++|++++..+++..
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKG---YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV 101 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCC---CEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhc
Confidence 789999999999999999999999 899999998543 1222111 1245778899999999998888866
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC---CeEEEeeccccccCCCC-CCCCCCCCCCCCh
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE---NLLIHLSTDQVYEGVKS-FYKEEDEIAPVNV 150 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~---~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~ 150 (300)
++|+|||||+......+..+++..+++|+.++. +++++|.+.++ ++||++||..+|+.... +++|+++..|.+.
T Consensus 102 -~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~-~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~ 179 (375)
T 1t2a_A 102 -KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTL-RLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSP 179 (375)
T ss_dssp -CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHH-HHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSH
T ss_pred -CCCEEEECCCcccccccccCHHHHHHHHHHHHH-HHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCCCCCCh
Confidence 799999999976544344577888999999996 99999999887 79999999999997654 8999999889999
Q ss_pred hHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHH
Q 022280 151 YGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKI 224 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~ 224 (300)
|+.+|.++|.+++.+ +.+++++|++++|||+.........+..++..+..+.......+ ++.++|+|++|+|++
T Consensus 180 Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a 259 (375)
T 1t2a_A 180 YGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEA 259 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHH
Confidence 999999999998765 45788999999999975321111112233334443333333444 468999999999999
Q ss_pred HHHHHhccccccccccceeeecCCCccCHHHHHH-----hhcc------------------------------CCCCCcc
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRG------------------------------VQSPADI 269 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~------------------------------~~~~~~~ 269 (300)
++.+++++.. ++||+++++.+|+.|+++ .... .......
T Consensus 260 ~~~~~~~~~~------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (375)
T 1t2a_A 260 MWLMLQNDEP------EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFL 333 (375)
T ss_dssp HHHHHHSSSC------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBC
T ss_pred HHHHHhcCCC------ceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCcccchhh
Confidence 9999987531 389999999999999988 1000 0111234
Q ss_pred ccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 270 SMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 270 ~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
.+|++|++++|||+| ++++++|+++++|+.
T Consensus 334 ~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~ 364 (375)
T 1t2a_A 334 QGDCTKAKQKLNWKPRVAFDELVREMVHADV 364 (375)
T ss_dssp CBCCHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHhcCCCccCCHHHHHHHHHHHHH
Confidence 679999999999999 799999999999984
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-43 Score=310.48 Aligned_cols=284 Identities=18% Similarity=0.185 Sum_probs=215.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.||+|||||||||||++|+++|+++|. ++|++++|+.+....... ....+.++.+|++|++++.++++ ++|+||
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~l~-~~~~v~~~~~Dl~d~~~l~~~~~---~~d~Vi 104 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGV--NQVHVVDNLLSAEKINVP-DHPAVRFSETSITDDALLASLQD---EYDYVF 104 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--SEEEEECCCTTCCGGGSC-CCTTEEEECSCTTCHHHHHHCCS---CCSEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC--ceEEEEECCCCCchhhcc-CCCceEEEECCCCCHHHHHHHhh---CCCEEE
Confidence 468999999999999999999999983 579999987654322111 13567888999999887776665 899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhc-cCCeEEEeeccccccCCCC-CCC--CCC---CC-CCCChhHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQVYEGVKS-FYK--EED---EI-APVNVYGK 153 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~-~~~--E~~---~~-~p~~~Y~~ 153 (300)
|+|+......+..+++..+++|+.++. +++++|++. ++++||++||..+|+.... +++ |++ +. .|.+.|+.
T Consensus 105 h~A~~~~~~~~~~~~~~~~~~nv~~~~-~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~~ 183 (377)
T 2q1s_A 105 HLATYHGNQSSIHDPLADHENNTLTTL-KLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSM 183 (377)
T ss_dssp ECCCCSCHHHHHHCHHHHHHHHTHHHH-HHHHHHTTCSSCCEEEEEEEC--------------CCCCCCCSSCCCSHHHH
T ss_pred ECCCccCchhhhhCHHHHHHHHHHHHH-HHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccccccccccCCCCchHH
Confidence 999976544444577889999999996 999999998 8999999999999998665 788 887 66 78899999
Q ss_pred HHHHHHHHHHHH----cCCceeEeeeeeeCCCCCC------CCC----CCchHHHHHHHHhcCCceeecc--CcccCcee
Q 022280 154 SKVAAEKFIYEK----CSNFAILRSSIIYGPQTIS------PVP----KSLPIQWIDSVLSKGEKVEFFH--DECRCPVY 217 (300)
Q Consensus 154 sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~ 217 (300)
+|.++|.+++.+ +.+++++||+.+|||+... ..+ ..+...++.... .+.++.+++ ++.++|+|
T Consensus 184 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~g~g~~~~~~i~ 262 (377)
T 2q1s_A 184 SKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKAL-KGMPLPLENGGVATRDFIF 262 (377)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHH-TTCCCCCSGGGCCEECCEE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHH-cCCCeEEeCCCCeEEeeEE
Confidence 999999999875 4689999999999997510 011 233444454444 566666555 46899999
Q ss_pred HHHHHHH-HHHHHhccccccccccceeeecCCCccCHHHHHH-----hhc---------cCCCCC-ccccChHHHHHhcC
Q 022280 218 VRDVVKI-ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDR---------GVQSPA-DISMDITKLVQTLN 281 (300)
Q Consensus 218 v~D~a~~-~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~---------~~~~~~-~~~~~~~k~~~~lg 281 (300)
++|+|++ ++.+++++. .+ +||+++++.+|+.|+++ ... ...... ...+|++|++++||
T Consensus 263 v~Dva~a~i~~~~~~~~-----~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d~~k~~~~lG 336 (377)
T 2q1s_A 263 VEDVANGLIACAADGTP-----GG-VYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELG 336 (377)
T ss_dssp HHHHHHHHHHHHHHCCT-----TE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCC-----CC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccCHHHHHHHcC
Confidence 9999999 999998743 13 89999999999999988 111 011123 57789999999999
Q ss_pred CCc-CCHHHHHHHHHhhhc
Q 022280 282 IDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 282 ~~p-~~~~~~l~~~~~~~~ 299 (300)
|+| ++++++|+++++||.
T Consensus 337 ~~p~~~l~e~l~~~~~~~~ 355 (377)
T 2q1s_A 337 FSADVSIDDGLRKTIEWTK 355 (377)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 999 899999999999974
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-43 Score=302.48 Aligned_cols=283 Identities=16% Similarity=0.150 Sum_probs=220.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhc--cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEI--EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~--g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+|+|||||||||||++|+++|+++ | ++|++++|++.... +. ..+.++.+|++|++++.++++.. ++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~~-~~----~~~~~~~~D~~d~~~~~~~~~~~-~~d~v 72 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGT---ENVIASDIRKLNTD-VV----NSGPFEVVNALDFNQIEHLVEVH-KITDI 72 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCG---GGEEEEESCCCSCH-HH----HSSCEEECCTTCHHHHHHHHHHT-TCCEE
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCC---CEEEEEcCCCcccc-cc----CCCceEEecCCCHHHHHHHHhhc-CCCEE
Confidence 578999999999999999999999 8 89999999865432 21 24567899999999988888765 89999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC--CCCCCCCCCCCCChhHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK--SFYKEEDEIAPVNVYGKSKVAA 158 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~--~~~~E~~~~~p~~~Y~~sK~~~ 158 (300)
||+|+.... ....+++..+++|+.++. +++++|++.++++|||+||..+|+... .+++|+++..|.+.|+.+|.++
T Consensus 73 ih~a~~~~~-~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 150 (312)
T 2yy7_A 73 YLMAALLSA-TAEKNPAFAWDLNMNSLF-HVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAG 150 (312)
T ss_dssp EECCCCCHH-HHHHCHHHHHHHHHHHHH-HHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHHHHH
T ss_pred EECCccCCC-chhhChHHHHHHHHHHHH-HHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccccCcCCCCchhHHHHHHH
Confidence 999997543 233567888999999996 999999999999999999999998754 3788999888999999999999
Q ss_pred HHHHHHH----cCCceeEeeeeeeCCCCCCCC-CCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHhc
Q 022280 159 EKFIYEK----CSNFAILRSSIIYGPQTISPV-PKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 159 e~~~~~~----~~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~ 231 (300)
|.+++.+ +.+++++||+.+|||+..... .......++...+.. +.+..++ ++.++|+|++|+|++++.++++
T Consensus 151 e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 229 (312)
T 2yy7_A 151 ERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIAD-KKYECFLSSETKMPMMYMDDAIDATINIMKA 229 (312)
T ss_dssp HHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHT-SEEEESSCTTCCEEEEEHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcC-CCeEEecCCCceeeeeeHHHHHHHHHHHHhC
Confidence 9998765 458899999999998642111 112223334444433 4444444 4689999999999999999988
Q ss_pred cccccccccceeeecCCCccCHHHHHHhhcc----------CC------CCCccccChHHHHHhcCCCc-CCHHHHHHHH
Q 022280 232 WLSEDKQMQLLLNVGGPDRVSRVQMAEVDRG----------VQ------SPADISMDITKLVQTLNIDP-VTYKDGVKLT 294 (300)
Q Consensus 232 ~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~~----------~~------~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~ 294 (300)
+.... ..+++||+++ +.+|+.|+++.... .. ......+|++|++++|||+| ++++++|+++
T Consensus 230 ~~~~~-~~~~~~ni~~-~~~s~~e~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~ 307 (312)
T 2yy7_A 230 PVEKI-KIHSSYNLAA-MSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDLESMTKDM 307 (312)
T ss_dssp CGGGC-CCSSCEECCS-EEECHHHHHHHHHTTCTTCEEEECCCTHHHHHTTSCSSBCCHHHHHHHCCCCCCCHHHHHHHH
T ss_pred ccccc-ccCceEEeCC-CccCHHHHHHHHHHHCCCCceEeccCccccccccccccCCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 54310 0023899986 88999999881110 00 11224679999999999999 7999999999
Q ss_pred Hhhhc
Q 022280 295 LAAEA 299 (300)
Q Consensus 295 ~~~~~ 299 (300)
++|+.
T Consensus 308 ~~~~k 312 (312)
T 2yy7_A 308 IEHLS 312 (312)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 99974
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=307.67 Aligned_cols=282 Identities=21% Similarity=0.200 Sum_probs=223.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+||+|||||||||||++|+++|+++| ++|++++|+++...... ..++.++++|++|++++..+++ ++|+||
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~---~~~v~~~~~Dl~d~~~~~~~~~---~~d~Vi 98 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG---HYVIASDWKKNEHMTED---MFCDEFHLVDLRVMENCLKVTE---GVDHVF 98 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCSSSCGG---GTCSEEEECCTTSHHHHHHHHT---TCSEEE
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC---CeEEEEECCCccchhhc---cCCceEEECCCCCHHHHHHHhC---CCCEEE
Confidence 46899999999999999999999999 89999999865433221 2357788999999988888876 899999
Q ss_pred EcccccCccc-cccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC------CCCCCCC--CCCCCChhH
Q 022280 82 NCAALSVPRV-CENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK------SFYKEED--EIAPVNVYG 152 (300)
Q Consensus 82 h~a~~~~~~~-~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~------~~~~E~~--~~~p~~~Y~ 152 (300)
|+|+...... +..+++..+++|+.++. +++++|.+.++++|||+||..+|+... .+++|++ +..|.+.|+
T Consensus 99 h~A~~~~~~~~~~~~~~~~~~~Nv~g~~-~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~ 177 (379)
T 2c5a_A 99 NLAADMGGMGFIQSNHSVIMYNNTMISF-NMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFG 177 (379)
T ss_dssp ECCCCCCCHHHHTTCHHHHHHHHHHHHH-HHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHH
T ss_pred ECceecCcccccccCHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChhH
Confidence 9999764321 24578889999999996 999999999999999999999998643 2477877 667889999
Q ss_pred HHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCC-CCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHH
Q 022280 153 KSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVP-KSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKII 225 (300)
Q Consensus 153 ~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~ 225 (300)
.+|.++|.+++.+ +.+++++||+.+|||+...... ......++..+..+...+.++++ +.++|+|++|+|+++
T Consensus 178 ~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai 257 (379)
T 2c5a_A 178 LEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV 257 (379)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHH
Confidence 9999999998765 4678999999999997542211 12344556555534333666654 678999999999999
Q ss_pred HHHHhccccccccccceeeecCCCccCHHHHHHhhc-----c--------CCCCCccccChHHHHHhcCCCc-CCHHHHH
Q 022280 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDR-----G--------VQSPADISMDITKLVQTLNIDP-VTYKDGV 291 (300)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~-----~--------~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l 291 (300)
+.+++++ . .++||+++++.+|+.|+++... . ........+|++|++++|||+| ++++++|
T Consensus 258 ~~~l~~~--~----~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l 331 (379)
T 2c5a_A 258 LRLTKSD--F----REPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGL 331 (379)
T ss_dssp HHHHHSS--C----CSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHHH
T ss_pred HHHhhcc--C----CCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCCCcccccCCHHHHHHHhCCCCCCCHHHHH
Confidence 9999875 2 2389999999999999998110 0 1112345789999999999999 7999999
Q ss_pred HHHHhhhc
Q 022280 292 KLTLAAEA 299 (300)
Q Consensus 292 ~~~~~~~~ 299 (300)
+++++|+.
T Consensus 332 ~~~~~~~~ 339 (379)
T 2c5a_A 332 RITYFWIK 339 (379)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-43 Score=303.98 Aligned_cols=276 Identities=17% Similarity=0.178 Sum_probs=217.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++|+|||||||||||++|+++|+++| ++|+++.|+. .+|++|.+++..+++.. ++|+|
T Consensus 1 M~~~~ilVtGatG~iG~~l~~~L~~~g---~~v~~~~r~~-----------------~~D~~d~~~~~~~~~~~-~~d~v 59 (321)
T 1e6u_A 1 MAKQRVFIAGHRGMVGSAIRRQLEQRG---DVELVLRTRD-----------------ELNLLDSRAVHDFFASE-RIDQV 59 (321)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCT---TEEEECCCTT-----------------TCCTTCHHHHHHHHHHH-CCSEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCC---CeEEEEecCc-----------------cCCccCHHHHHHHHHhc-CCCEE
Confidence 677899999999999999999999999 8899887752 37999998888888766 89999
Q ss_pred EEcccccCc-cccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCC----CCCCC-ChhHH
Q 022280 81 VNCAALSVP-RVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEED----EIAPV-NVYGK 153 (300)
Q Consensus 81 ih~a~~~~~-~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~----~~~p~-~~Y~~ 153 (300)
||+|+.... ..+..++...+++|+.++. +++++|.+.++++|||+||..+|+.... +++|++ +..|. +.|+.
T Consensus 60 ih~a~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~ 138 (321)
T 1e6u_A 60 YLAAAKVGGIVANNTYPADFIYQNMMIES-NIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI 138 (321)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHH-HHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH
T ss_pred EEcCeecCCcchhhhCHHHHHHHHHHHHH-HHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHH
Confidence 999997642 1234567888999999996 9999999999999999999999997654 888887 55564 59999
Q ss_pred HHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCC-CCCchHHHHHHHHh---cC-Cceeecc--CcccCceeHHHHH
Q 022280 154 SKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPV-PKSLPIQWIDSVLS---KG-EKVEFFH--DECRCPVYVRDVV 222 (300)
Q Consensus 154 sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~~---~~-~~~~~~~--~~~~~~i~v~D~a 222 (300)
+|..+|.+++.+ +.+++++||+.+|||+..... ...+...++..+.. .+ .++.+++ ++.++|+|++|+|
T Consensus 139 sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva 218 (321)
T 1e6u_A 139 AKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMA 218 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHH
Confidence 999999999875 568999999999999764211 12334445554442 12 5666555 4679999999999
Q ss_pred HHHHHHHhccccc----cccccceeeecCCCccCHHHHHH-----h---------hccCCCCCccccChHHHHHhcCCCc
Q 022280 223 KIILALTNRWLSE----DKQMQLLLNVGGPDRVSRVQMAE-----V---------DRGVQSPADISMDITKLVQTLNIDP 284 (300)
Q Consensus 223 ~~~~~~~~~~~~~----~~~~~~i~ni~~~~~~s~~e~~~-----~---------~~~~~~~~~~~~~~~k~~~~lg~~p 284 (300)
++++.+++++... ....+++||+++++.+|+.|+++ . ...........+|++|+++ |||+|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p 297 (321)
T 1e6u_A 219 AASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQ-LGWYH 297 (321)
T ss_dssp HHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHH-TTCCC
T ss_pred HHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCCCCCcccccCCHHHHHh-cCCcc
Confidence 9999999886542 00012399999999999999988 1 1111223456799999999 99999
Q ss_pred -CCHHHHHHHHHhhhc
Q 022280 285 -VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 -~~~~~~l~~~~~~~~ 299 (300)
++++++|+++++||.
T Consensus 298 ~~~~~~~l~~~~~~~~ 313 (321)
T 1e6u_A 298 EISLEAGLASTYQWFL 313 (321)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 899999999999984
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=306.02 Aligned_cols=270 Identities=22% Similarity=0.272 Sum_probs=215.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc----hhhhhhcC-CCceeEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL----PQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~----~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
++|+|||||||||||++|+++|+++| ++|++++|+... ...+.... ...+.++.+|++ +
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------------~ 69 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASG---EEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-------------D 69 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT---CCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-------------T
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCC---CEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc-------------c
Confidence 37899999999999999999999999 899999998652 11111100 122333344433 7
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHH
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSK 155 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK 155 (300)
+|+|||+|+......+..++...++ |+.++. +++++|++.++++|||+||..+|+.... +++|+++..|.+.|+.+|
T Consensus 70 ~d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~-~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~~~~~p~~~Y~~sK 147 (321)
T 3vps_A 70 VRLVYHLASHKSVPRSFKQPLDYLD-NVDSGR-HLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASK 147 (321)
T ss_dssp EEEEEECCCCCCHHHHTTSTTTTHH-HHHHHH-HHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHH
T ss_pred CCEEEECCccCChHHHHhCHHHHHH-HHHHHH-HHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCCCCCCCCChhHHHH
Confidence 9999999998765545566777788 999996 9999999999999999999999998766 899999999999999999
Q ss_pred HHHHHHHHHH----cC-CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHH
Q 022280 156 VAAEKFIYEK----CS-NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 156 ~~~e~~~~~~----~~-~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~ 228 (300)
..+|++++.+ +. +++++||+.+|||+... ..+...++.... .++.+.++++ +.++|+|++|+|++++.+
T Consensus 148 ~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~ 223 (321)
T 3vps_A 148 VGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERP---DALVPRLCANLL-TRNELPVEGDGEQRRDFTYITDVVDKLVAL 223 (321)
T ss_dssp HHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCT---TSHHHHHHHHHH-HHSEEEEETTSCCEECEEEHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeccccCcCCCC---CChHHHHHHHHH-cCCCeEEeCCCCceEceEEHHHHHHHHHHH
Confidence 9999999886 44 88999999999998643 233444444444 5666666654 679999999999999999
Q ss_pred HhccccccccccceeeecCCCccCHHHHHHhhc-------------cCCCCCccccChHHHHHhcCCCc--CCHHHHHHH
Q 022280 229 TNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDR-------------GVQSPADISMDITKLVQTLNIDP--VTYKDGVKL 293 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~-------------~~~~~~~~~~~~~k~~~~lg~~p--~~~~~~l~~ 293 (300)
++++.. + +||+++++.+|+.|+++... ......+..+|++|++++|||+| ++++++|++
T Consensus 224 ~~~~~~-----g-~~~i~~~~~~s~~e~~~~i~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~ 297 (321)
T 3vps_A 224 ANRPLP-----S-VVNFGSGQSLSVNDVIRILQATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEGIRL 297 (321)
T ss_dssp GGSCCC-----S-EEEESCSCCEEHHHHHHHHHTTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCSCCCCHHHHHHH
T ss_pred HhcCCC-----C-eEEecCCCcccHHHHHHHHHHhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCCCcCCHHHHHHH
Confidence 998543 2 89999999999999998221 12233456799999999999999 899999999
Q ss_pred HHhhhc
Q 022280 294 TLAAEA 299 (300)
Q Consensus 294 ~~~~~~ 299 (300)
+++||.
T Consensus 298 ~~~~~~ 303 (321)
T 3vps_A 298 TLEWWQ 303 (321)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999985
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=306.69 Aligned_cols=285 Identities=19% Similarity=0.124 Sum_probs=219.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch--hhhh---hc---CCCceeEEEeecCCchhHHHHHHhc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP--QLLL---DA---LPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~--~~~~---~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
||+|||||||||||++++++|+++| ++|++++|+++.. ..+. .. .+.++.++.+|++|++++.++++..
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG---YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV 77 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999999 8999999985431 1111 11 0246777899999999999888866
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC---CeEEEeeccccccCCCC-CCCCCCCCCCCCh
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE---NLLIHLSTDQVYEGVKS-FYKEEDEIAPVNV 150 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~---~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~ 150 (300)
++|+|||||+......+..++...+++|+.++. +++++|.+.++ ++||++||..+|+.... +++|+++..|.+.
T Consensus 78 -~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~~~~~~ 155 (372)
T 1db3_A 78 -QPDEVYNLGAMSHVAVSFESPEYTADVDAMGTL-RLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSP 155 (372)
T ss_dssp -CCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHH-HHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSH
T ss_pred -CCCEEEECCcccCccccccCHHHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCCCCCCh
Confidence 799999999987655455677888999999996 99999999887 79999999999998665 8999999999999
Q ss_pred hHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC-ceeecc--CcccCceeHHHHHH
Q 022280 151 YGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE-KVEFFH--DECRCPVYVRDVVK 223 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~i~v~D~a~ 223 (300)
|+.||.++|.+++.+ +.+++++|++++|||+............++.... .+. .....+ ++.++|+|++|+|+
T Consensus 156 Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~-~g~~~~~~~g~~~~~~~~i~v~Dva~ 234 (372)
T 1db3_A 156 YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIA-QGLESCLYLGNMDSLRDWGHAKDYVK 234 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHH-TTSCCCEEESCTTCEECCEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHH-cCCCCceeecCCCceeeeeEHHHHHH
Confidence 999999999998765 4578899999999997532111111223333333 343 333444 46899999999999
Q ss_pred HHHHHHhccccccccccceeeecCCCccCHHHHHH-----hhcc------------------------------------
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRG------------------------------------ 262 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~------------------------------------ 262 (300)
+++.+++++. + ++||+++++.+|+.|+++ ....
T Consensus 235 a~~~~~~~~~--~----~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1db3_A 235 MQWMMLQQEQ--P----EDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDP 308 (372)
T ss_dssp HHHHTTSSSS--C----CCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECG
T ss_pred HHHHHHhcCC--C----ceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccceeeccc
Confidence 9999998743 2 389999999999999988 0000
Q ss_pred ----CCCCCccccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 263 ----VQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 263 ----~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
........+|++|++++|||+| ++++++|+++++||.
T Consensus 309 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~ 350 (372)
T 1db3_A 309 RYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDL 350 (372)
T ss_dssp GGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred cccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHH
Confidence 0011234579999999999999 899999999999984
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=302.01 Aligned_cols=281 Identities=20% Similarity=0.328 Sum_probs=219.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCc-hhHHHHHHhcCCCCEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG-SGFDAVALKFGQPDVVV 81 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~d~vi 81 (300)
|+|||||||||||++++++|+++ | ++|++++|+++....+.. ..++.++++|++|. +.++.+++ ++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~---~~d~vi 72 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH---YEVYGLDIGSDAISRFLN--HPHFHFVEGDISIHSEWIEYHVK---KCDVVL 72 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT---CEEEEEESCCGGGGGGTT--CTTEEEEECCTTTCSHHHHHHHH---HCSEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC---CEEEEEeCCcchHHHhhc--CCCeEEEeccccCcHHHHHhhcc---CCCEEE
Confidence 58999999999999999999998 8 899999998765443322 24678899999985 45777776 799999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCC-------CCCChhHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEI-------APVNVYGK 153 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~-------~p~~~Y~~ 153 (300)
|||+.........++...+++|+.++. +++++|.+.+ ++|||+||..+|+.... +++|+++. .|.+.|+.
T Consensus 73 h~A~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~ 150 (345)
T 2bll_A 73 PLVAIATPIEYTRNPLRVFELDFEENL-RIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSV 150 (345)
T ss_dssp ECBCCCCHHHHHHSHHHHHHHHTHHHH-HHHHHHHHTT-CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHH
T ss_pred EcccccCccchhcCHHHHHHHHHHHHH-HHHHHHHHhC-CeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHH
Confidence 999976543334567788999999996 9999999888 89999999999998665 78888753 34568999
Q ss_pred HHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCC-----CCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHH
Q 022280 154 SKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPV-----PKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVV 222 (300)
Q Consensus 154 sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a 222 (300)
+|..+|.+++.+ +.+++++||+.+|||+..... .......++.... .+.++.+++ ++.++|+|++|+|
T Consensus 151 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~i~v~Dva 229 (345)
T 2bll_A 151 SKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLV-EGSPIKLIDGGKQKRCFTDIRDGI 229 (345)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHH-HTCCEEEGGGSCCEEECEEHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHH-cCCCcEEECCCCEEEEEEEHHHHH
Confidence 999999998765 468999999999999853211 1123344555444 556666665 3678999999999
Q ss_pred HHHHHHHhccc--cccccccceeeecCCC-ccCHHHHHHh-----hcc-------C-----------------CCCCccc
Q 022280 223 KIILALTNRWL--SEDKQMQLLLNVGGPD-RVSRVQMAEV-----DRG-------V-----------------QSPADIS 270 (300)
Q Consensus 223 ~~~~~~~~~~~--~~~~~~~~i~ni~~~~-~~s~~e~~~~-----~~~-------~-----------------~~~~~~~ 270 (300)
++++.+++++. ..+ ++||+++++ .+|+.|+++. ... . ....+..
T Consensus 230 ~a~~~~~~~~~~~~~g----~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (345)
T 2bll_A 230 EALYRIIENAGNRCDG----EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRK 305 (345)
T ss_dssp HHHHHHHHCGGGTTTT----EEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCC
T ss_pred HHHHHHHhhccccCCC----ceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccchhhhc
Confidence 99999998753 223 399999986 8999998881 000 0 0123456
Q ss_pred cChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 271 MDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 271 ~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
+|++|++++|||+| ++++++|+++++||.
T Consensus 306 ~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~ 335 (345)
T 2bll_A 306 PSIRNAHRCLDWEPKIDMQETIDETLDFFL 335 (345)
T ss_dssp BCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHhcCCCccccHHHHHHHHHHHHH
Confidence 89999999999999 899999999999974
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=299.71 Aligned_cols=274 Identities=16% Similarity=0.150 Sum_probs=216.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+.||+|||||||||||++|+++|+++| ++|++++|+.+........+ .++.++.+|++|++++.++++.. ++|+|
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~l~~~-~~~~~~~~Dl~d~~~~~~~~~~~-~~D~v 93 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERG---DKVVGIDNFATGRREHLKDH-PNLTFVEGSIADHALVNQLIGDL-QPDAV 93 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCGGGSCCC-TTEEEEECCTTCHHHHHHHHHHH-CCSEE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC---CEEEEEECCCccchhhHhhc-CCceEEEEeCCCHHHHHHHHhcc-CCcEE
Confidence 357899999999999999999999999 89999999754322222111 46778999999999988888753 69999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecccccc----CCCCCCCCCCCCCCC-ChhHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYE----GVKSFYKEEDEIAPV-NVYGKSK 155 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~----~~~~~~~E~~~~~p~-~~Y~~sK 155 (300)
||||+..... +..+++ +++|+.++. +++++|.+.++++||++||..+|+ ....+++|++ .|. +.|+.+|
T Consensus 94 ih~A~~~~~~-~~~~~~--~~~N~~~~~-~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~~~~E~~--~p~~~~Y~~sK 167 (333)
T 2q1w_A 94 VHTAASYKDP-DDWYND--TLTNCVGGS-NVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRLDHPR--NPANSSYAISK 167 (333)
T ss_dssp EECCCCCSCT-TCHHHH--HHHHTHHHH-HHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSBCTTSCC--CCTTCHHHHHH
T ss_pred EECceecCCC-ccCChH--HHHHHHHHH-HHHHHHHHhCCCEEEEECcHHHhCCCcccCCCCcCCCC--CCCCCchHHHH
Confidence 9999976543 222333 899999996 999999999999999999999998 5444788887 667 8999999
Q ss_pred HHHHHHHHH-HcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccc
Q 022280 156 VAAEKFIYE-KCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLS 234 (300)
Q Consensus 156 ~~~e~~~~~-~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~ 234 (300)
.++|.+++. +. +++++||+++|||+.. ..+...++.... .+..+.. +++.++|+|++|+|++++.+++++.
T Consensus 168 ~~~E~~~~~s~~-~~~ilR~~~v~gp~~~----~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~v~Dva~ai~~~~~~~~- 239 (333)
T 2q1w_A 168 SANEDYLEYSGL-DFVTFRLANVVGPRNV----SGPLPIFFQRLS-EGKKCFV-TKARRDFVFVKDLARATVRAVDGVG- 239 (333)
T ss_dssp HHHHHHHHHHTC-CEEEEEESEEESTTCC----SSHHHHHHHHHH-TTCCCEE-EECEECEEEHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHhhhC-CeEEEeeceEECcCCc----CcHHHHHHHHHH-cCCeeeC-CCceEeeEEHHHHHHHHHHHHhcCC-
Confidence 999999999 87 8999999999999831 233445555544 3332222 5678899999999999999998754
Q ss_pred ccccccceeeecCCCccCHHHHHH-----hhccCC-------CC-----CccccChHHHHHhcCCCc-CCHHHHHHHHHh
Q 022280 235 EDKQMQLLLNVGGPDRVSRVQMAE-----VDRGVQ-------SP-----ADISMDITKLVQTLNIDP-VTYKDGVKLTLA 296 (300)
Q Consensus 235 ~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~~~-------~~-----~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~ 296 (300)
++ +||+++++.+|+.|+++ ...... .. .+..+|++|++++ ||+| ++++++|+++++
T Consensus 240 -g~----~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~ 313 (333)
T 2q1w_A 240 -HG----AYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDF-GKIEFTPLKETVAAAVA 313 (333)
T ss_dssp -CE----EEECSCSCCEEHHHHHHHHHHHTTCSSCCCCEEEECCTTSCCCCCBCCHHHHHHH-CCCCCCCHHHHHHHHHH
T ss_pred -CC----EEEeCCCCCccHHHHHHHHHHHhCCCCceeCCCCCcccccccccccCCHHHHHhc-CCCcCCCHHHHHHHHHH
Confidence 33 99999999999999988 111100 11 4567899999888 9999 899999999999
Q ss_pred hhc
Q 022280 297 AEA 299 (300)
Q Consensus 297 ~~~ 299 (300)
||.
T Consensus 314 ~~~ 316 (333)
T 2q1w_A 314 YFR 316 (333)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=308.02 Aligned_cols=285 Identities=16% Similarity=0.095 Sum_probs=221.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-----hhhhhhcC---CC-ceeEEEeecCCchhHHHHHHhc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-----PQLLLDAL---PH-SFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-----~~~~~~~~---~~-~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
|+|||||||||||++|+++|+++| ++|++++|+.+. ...+.... +. ++.++.+|++|++++.++++..
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 105 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG---YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI 105 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC---CEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhc
Confidence 689999999999999999999999 899999998653 22221111 12 6778899999999998888865
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-----eEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-----LLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-----~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
++|+|||||+......+..+++..+++|+.++. +++++|.+.+++ +||++||..+|+....+++|+++..|.+
T Consensus 106 -~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~-~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~~~~E~~~~~~~~ 183 (381)
T 1n7h_A 106 -KPDEVYNLAAQSHVAVSFEIPDYTADVVATGAL-RLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRS 183 (381)
T ss_dssp -CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHH-HHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCCS
T ss_pred -CCCEEEECCcccCccccccCHHHHHHHHHHHHH-HHHHHHHHhCCccCCccEEEEeCcHHHhCCCCCCCCCCCCCCCCC
Confidence 799999999976544345577889999999996 999999987765 9999999999998766899999999999
Q ss_pred hhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHH
Q 022280 150 VYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVK 223 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~ 223 (300)
.|+.+|.++|.+++.+ +.+++++|++++|||+............++.....+.......+ ++.++|+|++|+|+
T Consensus 184 ~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~ 263 (381)
T 1n7h_A 184 PYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVE 263 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHH
Confidence 9999999999999876 44678999999999975321110111223333333333333344 46789999999999
Q ss_pred HHHHHHhccccccccccceeeecCCCccCHHHHHH-----hhcc-------------CCCCCccccChHHHHHhcCCCc-
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRG-------------VQSPADISMDITKLVQTLNIDP- 284 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~-------------~~~~~~~~~~~~k~~~~lg~~p- 284 (300)
+++.+++.+. + ++||+++++.+|+.|+++ .... ........+|++|++++|||+|
T Consensus 264 a~~~~~~~~~--~----~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 337 (381)
T 1n7h_A 264 AMWLMLQQEK--P----DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQ 337 (381)
T ss_dssp HHHHHHTSSS--C----CEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCC
T ss_pred HHHHHHhCCC--C----CeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHHhcCCccc
Confidence 9999998753 1 389999999999999988 1110 1112335679999999999999
Q ss_pred CCHHHHHHHHHhhhc
Q 022280 285 VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 ~~~~~~l~~~~~~~~ 299 (300)
++++++|+++++||.
T Consensus 338 ~~l~e~l~~~~~~~~ 352 (381)
T 1n7h_A 338 VGFEKLVKMMVDEDL 352 (381)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 899999999999974
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=300.50 Aligned_cols=275 Identities=20% Similarity=0.205 Sum_probs=216.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++|+|||||||||||++|+++|+++| ++|++++|+.+........+ .++.++.+|++|++++..+++.. ++|+|
T Consensus 18 ~~~~~vlVTGasG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~l-~~v~~~~~Dl~d~~~~~~~~~~~-~~D~v 92 (330)
T 2pzm_A 18 GSHMRILITGGAGCLGSNLIEHWLPQG---HEILVIDNFATGKREVLPPV-AGLSVIEGSVTDAGLLERAFDSF-KPTHV 92 (330)
T ss_dssp TTCCEEEEETTTSHHHHHHHHHHGGGT---CEEEEEECCSSSCGGGSCSC-TTEEEEECCTTCHHHHHHHHHHH-CCSEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCccchhhhhcc-CCceEEEeeCCCHHHHHHHHhhc-CCCEE
Confidence 357899999999999999999999999 89999999754433222222 46778999999999988888766 89999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC---CCCCCCCCCCCChhHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS---FYKEEDEIAPVNVYGKSKVA 157 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~---~~~E~~~~~p~~~Y~~sK~~ 157 (300)
|||||..... +..+++ +++|+.++. +++++|.+.++++||++||..+|+.... +++|++ .|.+.|+.+|.+
T Consensus 93 ih~A~~~~~~-~~~~~~--~~~N~~~~~-~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~--~~~~~Y~~sK~~ 166 (330)
T 2pzm_A 93 VHSAAAYKDP-DDWAED--AATNVQGSI-NVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT--APFTSYGISKTA 166 (330)
T ss_dssp EECCCCCSCT-TCHHHH--HHHHTHHHH-HHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC--CCCSHHHHHHHH
T ss_pred EECCccCCCc-cccChh--HHHHHHHHH-HHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC--CCCChHHHHHHH
Confidence 9999976543 222344 899999996 9999999989999999999999987643 788887 678899999999
Q ss_pred HHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHH-HHHHHHhcccccc
Q 022280 158 AEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK-IILALTNRWLSED 236 (300)
Q Consensus 158 ~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~-~~~~~~~~~~~~~ 236 (300)
+|.+++.+..+++++||+++|||+. ...+...++.... .+..+...+. .++|+|++|+|+ +++++++.+. +
T Consensus 167 ~e~~~~~~~~~~~~iR~~~v~gp~~----~~~~~~~~~~~~~-~~~~~~~~~~-~~~~i~~~Dva~~a~~~~~~~~~--g 238 (330)
T 2pzm_A 167 GEAFLMMSDVPVVSLRLANVTGPRL----AIGPIPTFYKRLK-AGQKCFCSDT-VRDFLDMSDFLAIADLSLQEGRP--T 238 (330)
T ss_dssp HHHHHHTCSSCEEEEEECEEECTTC----CSSHHHHHHHHHH-TTCCCCEESC-EECEEEHHHHHHHHHHHTSTTCC--C
T ss_pred HHHHHHHcCCCEEEEeeeeeECcCC----CCCHHHHHHHHHH-cCCEEeCCCC-EecceeHHHHHHHHHHHHhhcCC--C
Confidence 9999999877899999999999984 1223334444443 3332222233 789999999999 9999998743 3
Q ss_pred ccccceeeecCCCccCHHHHHH-----hhccCC-------CCCccccChHHH-----HHhcCCCc-CCHHHHHHHHHhhh
Q 022280 237 KQMQLLLNVGGPDRVSRVQMAE-----VDRGVQ-------SPADISMDITKL-----VQTLNIDP-VTYKDGVKLTLAAE 298 (300)
Q Consensus 237 ~~~~~i~ni~~~~~~s~~e~~~-----~~~~~~-------~~~~~~~~~~k~-----~~~lg~~p-~~~~~~l~~~~~~~ 298 (300)
++||+++++.+|+.|+++ ...... ......+|++|+ ++ |||+| ++++++|+++++||
T Consensus 239 ----~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~d~~k~~~~~l~~-lG~~p~~~~~~~l~~~~~~~ 313 (330)
T 2pzm_A 239 ----GVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETE-FGWKAKVDFKDTITGQLAWY 313 (330)
T ss_dssp ----EEEEESCSCCEEHHHHHHHHHHHHTCCCSSCCCEECCCTTSCSEECBCCHHHHHH-HCCCCCCCHHHHHHHHHHHH
T ss_pred ----CEEEeCCCCCCCHHHHHHHHHHHhCCCCceeCCCCcchhhccCCHHHHhhchHHH-cCCcccCCHHHHHHHHHHHH
Confidence 399999999999999988 111100 233467888888 77 99999 89999999999997
Q ss_pred c
Q 022280 299 A 299 (300)
Q Consensus 299 ~ 299 (300)
.
T Consensus 314 ~ 314 (330)
T 2pzm_A 314 D 314 (330)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=298.84 Aligned_cols=278 Identities=22% Similarity=0.324 Sum_probs=216.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
|++|+|||||||||||++|+++|+++| ++|++++|+..........+ ...+.++.+|+.+.. +.++|
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d 93 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDG---HEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL--------YIEVD 93 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCC--------CCCCS
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCC---CEEEEEeCCCccchhhhhhhccCCceEEEeCccCChh--------hcCCC
Confidence 357899999999999999999999999 89999998754322111111 246778899998863 24899
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCC-----CCCCCCChhH
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEE-----DEIAPVNVYG 152 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~-----~~~~p~~~Y~ 152 (300)
+|||+|+......+..+++..+++|+.++. +++++|.+.++ +||++||..+|+.... +++|+ ++..|.+.|+
T Consensus 94 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~-~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~ 171 (343)
T 2b69_A 94 QIYHLASPASPPNYMYNPIKTLKTNTIGTL-NMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYD 171 (343)
T ss_dssp EEEECCSCCSHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHH
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHH-HHHHHHHHhCC-cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchH
Confidence 999999976544344577888999999996 99999999887 9999999999987654 78887 4566778899
Q ss_pred HHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHH
Q 022280 153 KSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIIL 226 (300)
Q Consensus 153 ~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~ 226 (300)
.+|.++|.+++.+ +.+++++||+.+|||+.... .......++...+ .++.+.++++ +.++|+|++|+|++++
T Consensus 172 ~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~Dva~a~~ 249 (343)
T 2b69_A 172 EGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN-DGRVVSNFILQAL-QGEPLTVYGSGSQTRAFQYVSDLVNGLV 249 (343)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTT-CCCHHHHHHHHHH-HTCCEEEESSSCCEEECEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCC-cccHHHHHHHHHH-cCCCceEcCCCCeEEeeEeHHHHHHHHH
Confidence 9999999998764 46899999999999975321 1233445555555 4556666554 6789999999999999
Q ss_pred HHHhccccccccccceeeecCCCccCHHHHHH-----hh---------ccCCCCCccccChHHHHHhcCCCc-CCHHHHH
Q 022280 227 ALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VD---------RGVQSPADISMDITKLVQTLNIDP-VTYKDGV 291 (300)
Q Consensus 227 ~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~---------~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l 291 (300)
.+++.+. .++||+++++.+|+.|+++ .. .....+....+|++|++++|||+| ++++++|
T Consensus 250 ~~~~~~~------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l 323 (343)
T 2b69_A 250 ALMNSNV------SSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGL 323 (343)
T ss_dssp HHHTSSC------CSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHH
T ss_pred HHHhcCC------CCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCCCCCceecCCHHHHHHHcCCCCCCCHHHHH
Confidence 9998642 2389999999999999988 10 111234456789999999999999 8999999
Q ss_pred HHHHhhhc
Q 022280 292 KLTLAAEA 299 (300)
Q Consensus 292 ~~~~~~~~ 299 (300)
+++++||.
T Consensus 324 ~~~~~~~~ 331 (343)
T 2b69_A 324 NKAIHYFR 331 (343)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=298.13 Aligned_cols=273 Identities=13% Similarity=0.088 Sum_probs=214.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+|+|||||||||||++|+++|+++| ++|++++|+++....+.. .++.++.+|++|++++.++++ ++|+|||
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~l~~---~~~~~~~~Dl~d~~~~~~~~~---~~d~vih 83 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAG---HDLVLIHRPSSQIQRLAY---LEPECRVAEMLDHAGLERALR---GLDGVIF 83 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECTTSCGGGGGG---GCCEEEECCTTCHHHHHHHTT---TCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEecChHhhhhhcc---CCeEEEEecCCCHHHHHHHHc---CCCEEEE
Confidence 4799999999999999999999999 899999998766544322 257788999999988887776 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC--CCCCCCCCCC----CChhHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS--FYKEEDEIAP----VNVYGKSKV 156 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~--~~~E~~~~~p----~~~Y~~sK~ 156 (300)
+|+.... +..+++..+++|+.++. +++++|.+.++++|||+||..+|+.... ..+|+++..| .+.|+.+|.
T Consensus 84 ~a~~~~~--~~~~~~~~~~~n~~~~~-~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~E~~~~~p~~~~~~~Y~~sK~ 160 (342)
T 2x4g_A 84 SAGYYPS--RPRRWQEEVASALGQTN-PFYAACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKW 160 (342)
T ss_dssp C--------------CHHHHHHHHHH-HHHHHHHHHTCSCEEEECCGGGSCCCTTSSCBCTTCCCSSCCTTSCHHHHHHH
T ss_pred CCccCcC--CCCCHHHHHHHHHHHHH-HHHHHHHHcCCCeEEEECCHHhhCcCCCCCCCCCCCCCCccccccChHHHHHH
Confidence 9997542 33467788999999996 9999999999999999999999987654 3489999888 889999999
Q ss_pred HHHHHHHHH---cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccc
Q 022280 157 AAEKFIYEK---CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 157 ~~e~~~~~~---~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 233 (300)
.+|.+++.+ +.+++++||+.+|||+... +. ...++.... .+..+.+ +++.++|+|++|+|++++.+++++.
T Consensus 161 ~~e~~~~~~~~~g~~~~ilrp~~v~g~~~~~--~~--~~~~~~~~~-~~~~~~~-~~~~~~~i~v~Dva~~~~~~~~~~~ 234 (342)
T 2x4g_A 161 ALDEQAREQARNGLPVVIGIPGMVLGELDIG--PT--TGRVITAIG-NGEMTHY-VAGQRNVIDAAEAGRGLLMALERGR 234 (342)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECEEECSCCSS--CS--TTHHHHHHH-TTCCCEE-ECCEEEEEEHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhcCCcEEEEeCCceECCCCcc--cc--HHHHHHHHH-cCCCccc-cCCCcceeeHHHHHHHHHHHHhCCC
Confidence 999999875 4689999999999997621 11 223444443 5555555 7788999999999999999998754
Q ss_pred cccccccceeeecCCCccCHHHHHH-----hhcc-----C--------------------------C----CCCccccCh
Q 022280 234 SEDKQMQLLLNVGGPDRVSRVQMAE-----VDRG-----V--------------------------Q----SPADISMDI 273 (300)
Q Consensus 234 ~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~-----~--------------------------~----~~~~~~~~~ 273 (300)
. ++ +||+++++ +|+.|+++ .... . . ...+..+|+
T Consensus 235 ~-g~----~~~v~~~~-~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 308 (342)
T 2x4g_A 235 I-GE----RYLLTGHN-LEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDG 308 (342)
T ss_dssp T-TC----EEEECCEE-EEHHHHHHHHHHHHTCCCCEEECHHHHHHHHHHHHC----------------CCTTCCCCBCC
T ss_pred C-Cc----eEEEcCCc-ccHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHhcCcccCh
Confidence 3 33 99999998 99999988 1000 0 0 013467899
Q ss_pred HHHHHhcCC-CcCCHHHHHHHHHhhhc
Q 022280 274 TKLVQTLNI-DPVTYKDGVKLTLAAEA 299 (300)
Q Consensus 274 ~k~~~~lg~-~p~~~~~~l~~~~~~~~ 299 (300)
+|++++||| +|++++++|+++++||.
T Consensus 309 ~k~~~~lG~~~p~~~~~~l~~~~~~~~ 335 (342)
T 2x4g_A 309 RKAREELGFFSTTALDDTLLRAIDWFR 335 (342)
T ss_dssp HHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999 99999999999999974
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-42 Score=305.57 Aligned_cols=288 Identities=20% Similarity=0.163 Sum_probs=218.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh-----------------hh---hhcCCCceeEEEeec
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ-----------------LL---LDALPHSFVFFDVDL 61 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~-----------------~~---~~~~~~~~~~~~~D~ 61 (300)
.|++|||||||||||++|+++|+++| ++|++++|...... .+ .......+.++.+|+
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl 86 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKN---YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDI 86 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCT
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCC---CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCC
Confidence 46899999999999999999999999 89999988632210 11 111135677899999
Q ss_pred CCchhHHHHHHhcCCCCEEEEcccccCccccccChh---hhhhcccccchHHHHHhhhhccC-CeEEEeeccccccCCCC
Q 022280 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPD---SAMSINVPSSLVNWLSSFTENKE-NLLIHLSTDQVYEGVKS 137 (300)
Q Consensus 62 ~~~~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~---~~~~~nv~~~~~~l~~~~~~~~~-~~~v~~SS~~~~~~~~~ 137 (300)
+|++++.++++.. ++|+|||+||......+..++. ..+++|+.|+. +++++|.+.++ ++||++||.++|+....
T Consensus 87 ~d~~~~~~~~~~~-~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~-~ll~a~~~~~~~~~~V~~SS~~vyg~~~~ 164 (404)
T 1i24_A 87 CDFEFLAESFKSF-EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTL-NVLFAIKEFGEECHLVKLGTMGEYGTPNI 164 (404)
T ss_dssp TSHHHHHHHHHHH-CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHH-HHHHHHHHHCTTCEEEEECCGGGGCCCSS
T ss_pred CCHHHHHHHHhcc-CCCEEEECCCCCCccchhhCccchhhhHHHHHHHHH-HHHHHHHHhCCCcEEEEeCcHHHhCCCCC
Confidence 9999998888855 6999999999765433333443 47899999996 99999999887 59999999999998766
Q ss_pred CCCCC--------------CCCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCC--------------
Q 022280 138 FYKEE--------------DEIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISP-------------- 185 (300)
Q Consensus 138 ~~~E~--------------~~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~-------------- 185 (300)
+++|+ .+..|.+.|+.||.++|.+++.+ +.+++++||+.||||+....
T Consensus 165 ~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~ 244 (404)
T 1i24_A 165 DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDA 244 (404)
T ss_dssp CBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCST
T ss_pred CCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCcccccccccccccccc
Confidence 77776 35677889999999999988765 56889999999999975310
Q ss_pred CCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhh---
Q 022280 186 VPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD--- 260 (300)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~--- 260 (300)
.....+..++..+. .++++.++++ +.++|+|++|+|++++.+++++...+. .++||+++ +.+|+.|+++..
T Consensus 245 ~~~~~~~~~~~~~~-~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~--~~~yni~~-~~~s~~e~~~~i~~~ 320 (404)
T 1i24_A 245 VFGTALNRFCVQAA-VGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGE--FRVFNQFT-EQFSVNELASLVTKA 320 (404)
T ss_dssp TTCCHHHHHHHHHH-HTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTC--EEEEEECS-EEEEHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHH-cCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCC--ceEEEECC-CCCcHHHHHHHHHHH
Confidence 00233445555555 4566666654 679999999999999999987543331 14999998 889999988811
Q ss_pred ---ccCC-------------CCCccccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 261 ---RGVQ-------------SPADISMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 261 ---~~~~-------------~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
.+.. ......+|++|++ +|||+| .+++++++++++|+.
T Consensus 321 ~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~~~~~~~ 375 (404)
T 1i24_A 321 GSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAV 375 (404)
T ss_dssp HHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHH
T ss_pred HHhhCCCccccccCcccCccccceEecCHHHHH-HcCCCcCcCHHHHHHHHHHHHH
Confidence 1100 1123457999997 799999 899999999999874
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=318.45 Aligned_cols=292 Identities=22% Similarity=0.262 Sum_probs=222.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhcCCCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDALPHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
++|+|||||||||||++|+++|+++| ++|++++|+...... +......++.++++|++|++++.++++.+ ++
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 85 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENG---YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY-KI 85 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS-CC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhC-CC
Confidence 46899999999999999999999999 899999987543211 11111346778899999999998888866 89
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC-----CCCCCCCCCCCCChhH
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK-----SFYKEEDEIAPVNVYG 152 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~-----~~~~E~~~~~p~~~Y~ 152 (300)
|+|||+|+..........+...+++|+.++. +++++|++.++++||++||.++|+... .+++|+++..|.+.|+
T Consensus 86 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~-~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~~~p~~~Y~ 164 (699)
T 1z45_A 86 DSVIHFAGLKAVGESTQIPLRYYHNNILGTV-VLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYG 164 (699)
T ss_dssp CEEEECCSCCCHHHHHHSHHHHHHHHHHHHH-HHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHH
T ss_pred CEEEECCcccCcCccccCHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccCCCCCCChHH
Confidence 9999999976543334456778999999996 999999999999999999999998643 3788998888999999
Q ss_pred HHHHHHHHHHHHH------cCCceeEeeeeeeCCCCCC---CC----CCCchHHHHHHHHhc-CCceeecc--------C
Q 022280 153 KSKVAAEKFIYEK------CSNFAILRSSIIYGPQTIS---PV----PKSLPIQWIDSVLSK-GEKVEFFH--------D 210 (300)
Q Consensus 153 ~sK~~~e~~~~~~------~~~~~ilR~~~v~G~~~~~---~~----~~~~~~~~~~~~~~~-~~~~~~~~--------~ 210 (300)
.||.++|++++.+ +.+++++||+++|||+... .. +..+. .++...... +.++.++| +
T Consensus 165 ~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~g~ 243 (699)
T 1z45_A 165 HTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLL-PYMAQVAVGRREKLYIFGDDYDSRDGT 243 (699)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHH-HHHHHHHTTSSSCCCCC------CCSS
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHH-HHHHHHHhcCCCceEEeCCcccCCCCC
Confidence 9999999999875 3478999999999986421 11 12222 234444422 23454443 4
Q ss_pred cccCceeHHHHHHHHHHHHhcccc--ccccccceeeecCCCccCHHHHHHh-----hc---------cCCCCCccccChH
Q 022280 211 ECRCPVYVRDVVKIILALTNRWLS--EDKQMQLLLNVGGPDRVSRVQMAEV-----DR---------GVQSPADISMDIT 274 (300)
Q Consensus 211 ~~~~~i~v~D~a~~~~~~~~~~~~--~~~~~~~i~ni~~~~~~s~~e~~~~-----~~---------~~~~~~~~~~~~~ 274 (300)
+.++|+|++|+|++++.+++.... ......++||+++++.+|+.|+++. .. .........+|++
T Consensus 244 ~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~ 323 (699)
T 1z45_A 244 PIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPD 323 (699)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCH
T ss_pred eeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCCCCCccccccCCHH
Confidence 678999999999999999986421 0011234999999999999998881 00 0112345678999
Q ss_pred HHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 275 KLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 275 k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
|++++|||+| ++++++|+++++|+.
T Consensus 324 ka~~~LG~~p~~~l~egl~~~~~w~~ 349 (699)
T 1z45_A 324 RAKRELKWQTELQVEDSCKDLWKWTT 349 (699)
T ss_dssp HHHHHTCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999 999999999999984
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=291.72 Aligned_cols=280 Identities=21% Similarity=0.270 Sum_probs=216.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh--cCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK--FGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~~~d~ 79 (300)
.+|+|||||||||||++|+++|+++|. ++|+++.|++.... . ..+. .+. +.+|++|.+.++.+++. ++++|+
T Consensus 45 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~-~-~~~~-~~~-~~~d~~~~~~~~~~~~~~~~~~~d~ 118 (357)
T 2x6t_A 45 EGRMIIVTGGAGFIGSNIVKALNDKGI--TDILVVDNLKDGTK-F-VNLV-DLN-IADYMDKEDFLIQIMAGEEFGDVEA 118 (357)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTC--CCEEEEECCSSGGG-G-GGTT-TSC-CSEEEEHHHHHHHHHTTCCCSSCCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--cEEEEEecCCCcch-h-hccc-Cce-EeeecCcHHHHHHHHhhcccCCCCE
Confidence 357899999999999999999999984 57888888754421 1 1111 233 67899998888877762 236999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAA 158 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~ 158 (300)
|||+|+.... ...+++..+++|+.++. +++++|.+.++ +||++||..+|+.... +++|+++..|.+.|+.+|.++
T Consensus 119 Vih~A~~~~~--~~~~~~~~~~~n~~~~~-~ll~a~~~~~~-r~V~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~ 194 (357)
T 2x6t_A 119 IFHEGACSST--TEWDGKYMMDNNYQYSK-ELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLF 194 (357)
T ss_dssp EEECCSCCCT--TCCCHHHHHHHTHHHHH-HHHHHHHHHTC-CEEEEEEGGGGCSCSSCCCSSGGGCCCSSHHHHHHHHH
T ss_pred EEECCcccCC--ccCCHHHHHHHHHHHHH-HHHHHHHHcCC-eEEEEcchHHhCCCCCCCcCCcCCCCCCChhHHHHHHH
Confidence 9999997654 34567889999999996 99999999899 9999999999998765 899999999999999999999
Q ss_pred HHHHHHHc----CCceeEeeeeeeCCCCCCCC-CCCchHHHHHHHHhcCCceeeccC--c-ccCceeHHHHHHHHHHHHh
Q 022280 159 EKFIYEKC----SNFAILRSSIIYGPQTISPV-PKSLPIQWIDSVLSKGEKVEFFHD--E-CRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 159 e~~~~~~~----~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~v~D~a~~~~~~~~ 230 (300)
|.+++.++ .+++++||+.+|||+..... .......++..+. .+..+.++++ + .++|+|++|+|++++.+++
T Consensus 195 E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~ 273 (357)
T 2x6t_A 195 DEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLN-NGESPKLFEGSENFKRDFVYVGDVADVNLWFLE 273 (357)
T ss_dssp HHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHH-TTCCCEEETTGGGCEECEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHH-cCCCcEEeCCCCcceEccEEHHHHHHHHHHHHh
Confidence 99998875 37899999999999754211 1123334444443 5666666554 5 7899999999999999998
Q ss_pred ccccccccccceeeecCCCccCHHHHHH-----hhcc-----C-------CCCCccccChHHHHHhcCC-Cc-CCHHHHH
Q 022280 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRG-----V-------QSPADISMDITKLVQTLNI-DP-VTYKDGV 291 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~-----~-------~~~~~~~~~~~k~~~~lg~-~p-~~~~~~l 291 (300)
++. ++ +||+++++.+|+.|+++ .... . .......+|++|+++ ||| .| ++++++|
T Consensus 274 ~~~--~~----~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-lG~~~~~~~l~e~l 346 (357)
T 2x6t_A 274 NGV--SG----IFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYDKPFKTVAEGV 346 (357)
T ss_dssp HCC--CE----EEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGGTTSCCSBCCCCCHHHHH-TTCCCCCCCHHHHH
T ss_pred cCC--CC----eEEecCCCcccHHHHHHHHHHHcCCCCceecCCCcccccccccccccCHHHHHH-cCCCCCCCCHHHHH
Confidence 854 33 99999999999999988 1111 0 011235679999976 999 67 8999999
Q ss_pred HHHHhhhc
Q 022280 292 KLTLAAEA 299 (300)
Q Consensus 292 ~~~~~~~~ 299 (300)
+++++|+.
T Consensus 347 ~~~~~~~~ 354 (357)
T 2x6t_A 347 TEYMAWLN 354 (357)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99999985
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=287.77 Aligned_cols=278 Identities=16% Similarity=0.164 Sum_probs=214.7
Q ss_pred eEEEEcCCccchHHHHHhhhhc--cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEI--EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~--g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+|||||||||||++|+++|+++ | ++|++++|+.+... .+.++.+|++|++++.++++.. ++|+|||
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~~--------~~~~~~~D~~d~~~~~~~~~~~-~~d~vih 68 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK---KNVIASDIVQRDTG--------GIKFITLDVSNRDEIDRAVEKY-SIDAIFH 68 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG---GGEEEEESSCCCCT--------TCCEEECCTTCHHHHHHHHHHT-TCCEEEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC---CEEEEecCCCcccc--------CceEEEecCCCHHHHHHHHhhc-CCcEEEE
Confidence 5899999999999999999999 8 89999988754321 3567899999999988888765 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC--CCCCCCCCCCCCChhHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK--SFYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~--~~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
+|+.... ....+++..+++|+.++. +++++|++.++++||++||..+|+... .+.+|+++..|.+.|+.+|.++|.
T Consensus 69 ~a~~~~~-~~~~~~~~~~~~n~~~~~-~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~ 146 (317)
T 3ajr_A 69 LAGILSA-KGEKDPALAYKVNMNGTY-NILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAEL 146 (317)
T ss_dssp CCCCCHH-HHHHCHHHHHHHHHHHHH-HHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHHHH
T ss_pred CCcccCC-ccccChHHHhhhhhHHHH-HHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHHHH
Confidence 9997542 233467888999999996 999999999999999999999999753 368888888899999999999999
Q ss_pred HHHHH----cCCceeEeeeeeeCCCCCCC-CCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHhccc
Q 022280 161 FIYEK----CSNFAILRSSIIYGPQTISP-VPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 161 ~~~~~----~~~~~ilR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~ 233 (300)
+++.+ +.+++++||+.+||+..... ........++...+.. +.+...+ ++.++|+|++|+|++++.+++++.
T Consensus 147 ~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 225 (317)
T 3ajr_A 147 LGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKR-EKYKCYLAPNRALPMMYMPDALKALVDLYEADR 225 (317)
T ss_dssp HHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTT-CCEEECSCTTCCEEEEEHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhC-CCceeecCccceeeeeEHHHHHHHHHHHHhCCc
Confidence 88765 45889999999999763211 1112222334444433 3444443 467899999999999999998754
Q ss_pred cccccccceeeecCCCccCHHHHHHhhccCC----------------CCCccccChHHHHHhcCCCc-CCHHHHHHHHHh
Q 022280 234 SEDKQMQLLLNVGGPDRVSRVQMAEVDRGVQ----------------SPADISMDITKLVQTLNIDP-VTYKDGVKLTLA 296 (300)
Q Consensus 234 ~~~~~~~~i~ni~~~~~~s~~e~~~~~~~~~----------------~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~ 296 (300)
... ..+++||+++ +.+|+.|+++...... ......+|++|++++|||+| ++++++|+++++
T Consensus 226 ~~~-~~g~~~~i~~-~~~s~~e~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~ 303 (317)
T 3ajr_A 226 DKL-VLRNGYNVTA-YTFTPSELYSKIKERIPEFEIEYKEDFRDKIAATWPESLDSSEASNEWGFSIEYDLDRTIDDMID 303 (317)
T ss_dssp GGC-SSCSCEECCS-EEECHHHHHHHHHTTCCSCCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCCCCCCHHHHHHHHHH
T ss_pred ccc-ccCceEecCC-ccccHHHHHHHHHHHCCccccccccccchhhccccccccCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 310 0124899986 5799999988111100 01123579999999999999 799999999999
Q ss_pred hhc
Q 022280 297 AEA 299 (300)
Q Consensus 297 ~~~ 299 (300)
|+.
T Consensus 304 ~~~ 306 (317)
T 3ajr_A 304 HIS 306 (317)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=282.25 Aligned_cols=252 Identities=16% Similarity=0.175 Sum_probs=202.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
|||+|||||| ||||++|+++|+++| ++|+++.|+++....+.. .+++++.+|++|.+ +.++|+||
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~---~~~~~~~~D~~d~~--------~~~~d~vi 68 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQG---WRIIGTSRNPDQMEAIRA---SGAEPLLWPGEEPS--------LDGVTHLL 68 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGT---CEEEEEESCGGGHHHHHH---TTEEEEESSSSCCC--------CTTCCEEE
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCC---CEEEEEEcChhhhhhHhh---CCCeEEEecccccc--------cCCCCEEE
Confidence 5689999998 999999999999999 899999998765554432 46788999999954 34899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAA 158 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~ 158 (300)
|+|+..... .+ .+ .++++++++ .++++|||+||..+|+.... +++|+++..|.+.|+.+|..+
T Consensus 69 ~~a~~~~~~----~~---------~~-~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 134 (286)
T 3ius_A 69 ISTAPDSGG----DP---------VL-AALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMA 134 (286)
T ss_dssp ECCCCBTTB----CH---------HH-HHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCCSHHHHHHHHH
T ss_pred ECCCccccc----cH---------HH-HHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 999965432 11 12 378888888 78899999999999998776 899999999999999999999
Q ss_pred HHHHHHH-cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc-CcccCceeHHHHHHHHHHHHhcccccc
Q 022280 159 EKFIYEK-CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH-DECRCPVYVRDVVKIILALTNRWLSED 236 (300)
Q Consensus 159 e~~~~~~-~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~v~D~a~~~~~~~~~~~~~~ 236 (300)
|++++++ +.+++++||+.+||++... . .. +..+....+.+ ++.++|+|++|+|++++.+++++.. +
T Consensus 135 E~~~~~~~~~~~~ilRp~~v~G~~~~~-~---------~~-~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-g 202 (286)
T 3ius_A 135 EQQWQAVPNLPLHVFRLAGIYGPGRGP-F---------SK-LGKGGIRRIIKPGQVFSRIHVEDIAQVLAASMARPDP-G 202 (286)
T ss_dssp HHHHHHSTTCCEEEEEECEEEBTTBSS-S---------TT-SSSSCCCEEECTTCCBCEEEHHHHHHHHHHHHHSCCT-T
T ss_pred HHHHHhhcCCCEEEEeccceECCCchH-H---------HH-HhcCCccccCCCCcccceEEHHHHHHHHHHHHhCCCC-C
Confidence 9999998 7899999999999997532 1 11 11445555554 4688999999999999999998653 2
Q ss_pred ccccceeeecCCCccCHHHHHH-----hhcc--------CC--C-------CCccccChHHHHHhcCCCc-C-CHHHHHH
Q 022280 237 KQMQLLLNVGGPDRVSRVQMAE-----VDRG--------VQ--S-------PADISMDITKLVQTLNIDP-V-TYKDGVK 292 (300)
Q Consensus 237 ~~~~~i~ni~~~~~~s~~e~~~-----~~~~--------~~--~-------~~~~~~~~~k~~~~lg~~p-~-~~~~~l~ 292 (300)
+ +||+++++.+|+.|+++ .... .. . ..+..+|++|++++|||+| + +++++|+
T Consensus 203 ~----~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~~e~l~ 278 (286)
T 3ius_A 203 A----VYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYRVGLE 278 (286)
T ss_dssp C----EEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSSHHHHHH
T ss_pred C----EEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCCHHHHHH
Confidence 3 99999999999999988 1000 00 0 1456689999999999999 6 7999999
Q ss_pred HHHhhh
Q 022280 293 LTLAAE 298 (300)
Q Consensus 293 ~~~~~~ 298 (300)
++++..
T Consensus 279 ~~~~~~ 284 (286)
T 3ius_A 279 ALQADA 284 (286)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 999864
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=284.86 Aligned_cols=276 Identities=22% Similarity=0.280 Sum_probs=208.9
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh-hhhhcCCCceeEEEeecCCchhHHHHHHh--cCCCCEEE
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ-LLLDALPHSFVFFDVDLKSGSGFDAVALK--FGQPDVVV 81 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~~~d~vi 81 (300)
+|||||||||||++|+++|+++|. ++|+++.|++.... .... .+. +.+|++|.+.++.+++. ++++|+||
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~----~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi 73 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGI--TDILVVDNLKDGTKFVNLV----DLN-IADYMDKEDFLIQIMAGEEFGDVEAIF 73 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTC--CCEEEEECCSSGGGGHHHH----TSC-CSEEEEHHHHHHHHHTTCCCSSCCEEE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCC--cEEEEEccCCCCchhhhcC----cce-eccccccHHHHHHHHhccccCCCcEEE
Confidence 589999999999999999999994 57888888755421 1111 122 67899998888877762 12599999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
|+|+.... +..+++..+++|+.++. +++++|.+.++ +|||+||..+|+.... +++|+++..|.+.|+.+|..+|.
T Consensus 74 ~~a~~~~~--~~~~~~~~~~~n~~~~~-~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~ 149 (310)
T 1eq2_A 74 HEGACSST--TEWDGKYMMDNNYQYSK-ELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDE 149 (310)
T ss_dssp ECCSCCCT--TCCCHHHHHHHTHHHHH-HHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHHHH
T ss_pred ECcccccC--cccCHHHHHHHHHHHHH-HHHHHHHHcCC-eEEEEeeHHHhCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Confidence 99997654 34567889999999996 99999999999 9999999999998765 89999999999999999999999
Q ss_pred HHHHHc----CCceeEeeeeeeCCCCCCCC-CCCchHHHHHHHHhcCCceeecc--Cc-ccCceeHHHHHHHHHHHHhcc
Q 022280 161 FIYEKC----SNFAILRSSIIYGPQTISPV-PKSLPIQWIDSVLSKGEKVEFFH--DE-CRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 161 ~~~~~~----~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~i~v~D~a~~~~~~~~~~ 232 (300)
++++++ .+++++||+.+|||+..... ...+...++..+ ..++.+.+++ ++ .++|+|++|+|++++.+++++
T Consensus 150 ~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~ 228 (310)
T 1eq2_A 150 YVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQL-NNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENG 228 (310)
T ss_dssp HHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHH-HC-------------CBCEEEHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHH-HcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcC
Confidence 998875 47899999999999753111 112333444443 3556555554 46 889999999999999999875
Q ss_pred ccccccccceeeecCCCccCHHHHHHhh-----cc---C---------CCCCccccChHHHHHhcCC-Cc-CCHHHHHHH
Q 022280 233 LSEDKQMQLLLNVGGPDRVSRVQMAEVD-----RG---V---------QSPADISMDITKLVQTLNI-DP-VTYKDGVKL 293 (300)
Q Consensus 233 ~~~~~~~~~i~ni~~~~~~s~~e~~~~~-----~~---~---------~~~~~~~~~~~k~~~~lg~-~p-~~~~~~l~~ 293 (300)
. + ++||+++++.+|+.|+++.. .. . .......+|++|+++ ||| +| ++++++|++
T Consensus 229 ~--~----~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~~~~~~l~~~l~~ 301 (310)
T 1eq2_A 229 V--S----GIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTE 301 (310)
T ss_dssp C--C----EEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHH-TTCCCCCCCHHHHHHH
T ss_pred C--C----CeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChhhhcccccccccchHHHHh-cCCCCCCCCHHHHHHH
Confidence 4 3 39999999999999999811 11 0 001235679999966 999 67 899999999
Q ss_pred HHhhhc
Q 022280 294 TLAAEA 299 (300)
Q Consensus 294 ~~~~~~ 299 (300)
+++||.
T Consensus 302 ~~~~~~ 307 (310)
T 1eq2_A 302 YMAWLN 307 (310)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 999985
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=289.24 Aligned_cols=288 Identities=13% Similarity=0.126 Sum_probs=216.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCC----CceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGK----PYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~----~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|++|+|||||||||||++|+++|+++|+. +++|++++|+.+.... ....++.++++|++|++++..+++ ++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~--~~ 86 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA---GFSGAVDARAADLSAPGEAEKLVE--AR 86 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT---TCCSEEEEEECCTTSTTHHHHHHH--TC
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc---ccCCceeEEEcCCCCHHHHHHHHh--cC
Confidence 45789999999999999999999999810 0278888887543321 123567788999999998888775 38
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-----CCeEEEeeccccccCC-CCCCCCCCCCCCCCh
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-----ENLLIHLSTDQVYEGV-KSFYKEEDEIAPVNV 150 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-----~~~~v~~SS~~~~~~~-~~~~~E~~~~~p~~~ 150 (300)
+|+|||+|+.... .+..+++..+++|+.++. +++++|.+.+ +++||++||..+|+.. ..+++|+++..|.+.
T Consensus 87 ~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~-~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~ 164 (342)
T 2hrz_A 87 PDVIFHLAAIVSG-EAELDFDKGYRINLDGTR-YLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTS 164 (342)
T ss_dssp CSEEEECCCCCHH-HHHHCHHHHHHHHTHHHH-HHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTCCCCCSSH
T ss_pred CCEEEECCccCcc-cccccHHHHHHHHHHHHH-HHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCCCCCCcch
Confidence 9999999997542 234567888999999996 9999998876 7899999999999986 458999999999999
Q ss_pred hHHHHHHHHHHHHHHcC----CceeEeeeeeeC-CCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHH
Q 022280 151 YGKSKVAAEKFIYEKCS----NFAILRSSIIYG-PQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVK 223 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~----~~~ilR~~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~ 223 (300)
|+.||.++|.++++++. +.+++|++.+|| |+........+...++.... .+....+++ +...+++|++|+|+
T Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~Dva~ 243 (342)
T 2hrz_A 165 YGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPL-VGQEAVLPVPESIRHWHASPRSAVG 243 (342)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHH-TTCCEEECSCTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHh-cCCCeeccCCCccceeeEehHHHHH
Confidence 99999999999988753 568899999998 66432211223334444444 455544443 34567899999999
Q ss_pred HHHHHHhccccccccccceeeecCCCccCHHHHHH-------hhc----cCC-C--------CCccccChHHHHHhcCCC
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-------VDR----GVQ-S--------PADISMDITKLVQTLNID 283 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-------~~~----~~~-~--------~~~~~~~~~k~~~~lg~~ 283 (300)
+++.+++.+... ...+++||++ ++.+|+.|+++ ... ... . .....+|++|+++ |||+
T Consensus 244 ~~~~~~~~~~~~-~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~ 320 (342)
T 2hrz_A 244 FLIHGAMIDVEK-VGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAPGFEAKRARE-LGFT 320 (342)
T ss_dssp HHHHHHHSCHHH-HCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSCCCBCCHHHHH-TTCC
T ss_pred HHHHHHhccccc-cCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccccccChHHHHH-cCCC
Confidence 999999875430 0012399995 57899999888 110 000 0 1112479999988 9999
Q ss_pred c-CCHHHHHHHHHhhhc
Q 022280 284 P-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 284 p-~~~~~~l~~~~~~~~ 299 (300)
| ++++++|+++++|+.
T Consensus 321 p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 321 AESSFEEIIQVHIEDEL 337 (342)
T ss_dssp CCSSHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 9 899999999999985
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=307.96 Aligned_cols=283 Identities=20% Similarity=0.334 Sum_probs=222.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchh-HHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSG-FDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~~d~ 79 (300)
++|+|||||||||||++|+++|+++ | ++|++++|+.+....+.. ..++.++.+|++|.++ ++.+++ ++|+
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g---~~V~~~~r~~~~~~~~~~--~~~v~~v~~Dl~d~~~~~~~~~~---~~D~ 385 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDH---YEVYGLDIGSDAISRFLN--HPHFHFVEGDISIHSEWIEYHVK---KCDV 385 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSS---EEEEEEESCCTTTGGGTT--CTTEEEEECCTTTCHHHHHHHHH---HCSE
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCC---CEEEEEEcCchhhhhhcc--CCceEEEECCCCCcHHHHHHhhc---CCCE
Confidence 5689999999999999999999998 8 899999998765443322 3467889999999865 666666 7999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCC-------CCCChh
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEI-------APVNVY 151 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~-------~p~~~Y 151 (300)
|||+|+.........++...+++|+.++. +++++|.+.+ ++|||+||..+|+.... +++|+++. .|.+.|
T Consensus 386 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~-~ll~aa~~~~-~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y 463 (660)
T 1z7e_A 386 VLPLVAIATPIEYTRNPLRVFELDFEENL-RIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 463 (660)
T ss_dssp EEECCCCCCTHHHHHSHHHHHHHHTHHHH-HHHHHHHHTT-CEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHH
T ss_pred EEECceecCccccccCHHHHHHhhhHHHH-HHHHHHHHhC-CEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCc
Confidence 99999976544344577889999999996 9999999888 89999999999988654 78888752 456689
Q ss_pred HHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCC-----CCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHH
Q 022280 152 GKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTIS-----PVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD 220 (300)
Q Consensus 152 ~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D 220 (300)
+.||.++|.+++.+ +.+++++||+++|||+... .........++.... .+.++.+++ ++.++|+|++|
T Consensus 464 ~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~g~g~~~~~~i~v~D 542 (660)
T 1z7e_A 464 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLV-EGSPIKLIDGGKQKRCFTDIRD 542 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHH-HTCCEEEEGGGCCEEECEEHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHH-cCCCcEEeCCCCeEEEEEEHHH
Confidence 99999999998654 4689999999999997531 011233444555554 456666654 46899999999
Q ss_pred HHHHHHHHHhccc--cccccccceeeecCCC-ccCHHHHHHh-----hc-------cC-----------------CCCCc
Q 022280 221 VVKIILALTNRWL--SEDKQMQLLLNVGGPD-RVSRVQMAEV-----DR-------GV-----------------QSPAD 268 (300)
Q Consensus 221 ~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~-~~s~~e~~~~-----~~-------~~-----------------~~~~~ 268 (300)
+|++++.+++++. ..+ ++||+++++ .+|+.|+++. .. .. .....
T Consensus 543 va~ai~~~l~~~~~~~~g----~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 618 (660)
T 1z7e_A 543 GIEALYRIIENAGNRCDG----EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEH 618 (660)
T ss_dssp HHHHHHHHHHCGGGTTTT----EEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCCCCSC
T ss_pred HHHHHHHHHhCccccCCC----eEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccccccccchhh
Confidence 9999999998754 233 399999986 8999998880 00 00 11234
Q ss_pred cccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 269 ISMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 269 ~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
..+|++|++++|||+| ++++++|+++++||.
T Consensus 619 ~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~ 650 (660)
T 1z7e_A 619 RKPSIRNAHRCLDWEPKIDMQETIDETLDFFL 650 (660)
T ss_dssp CCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHhcCCCccCcHHHHHHHHHHHHH
Confidence 5689999999999999 899999999999985
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=290.66 Aligned_cols=282 Identities=17% Similarity=0.137 Sum_probs=212.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CCCceeEE-EeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LPHSFVFF-DVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~~~~~~~-~~D~~~~~~~~~~~~~~~~ 76 (300)
++|+|||||||||||++++++|+++| ++|++++|+.+....+... .+.++.++ .+|++|++++.++++ +
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~---~ 83 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHG---YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK---G 83 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT---T
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc---C
Confidence 56899999999999999999999999 8999999985544333221 13567777 799999988777765 8
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhh-ccCCeEEEeeccccccCC-C----CCCCCCCC------
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE-NKENLLIHLSTDQVYEGV-K----SFYKEEDE------ 144 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~-~~~~~~v~~SS~~~~~~~-~----~~~~E~~~------ 144 (300)
+|+|||+|+..... .++...+++|+.++. +++++|.+ .++++||++||..+|+.. . .+++|+++
T Consensus 84 ~d~vih~A~~~~~~---~~~~~~~~~n~~g~~-~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~ 159 (342)
T 1y1p_A 84 AAGVAHIASVVSFS---NKYDEVVTPAIGGTL-NALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESID 159 (342)
T ss_dssp CSEEEECCCCCSCC---SCHHHHHHHHHHHHH-HHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHH
T ss_pred CCEEEEeCCCCCCC---CCHHHHHHHHHHHHH-HHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhh
Confidence 99999999976542 367889999999996 99999984 678899999999998543 2 46788772
Q ss_pred ----------CCCCChhHHHHHHHHHHHHHHc------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeec
Q 022280 145 ----------IAPVNVYGKSKVAAEKFIYEKC------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF 208 (300)
Q Consensus 145 ----------~~p~~~Y~~sK~~~e~~~~~~~------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
..|.+.|+.||.++|.+++.+. .+++++||+++|||.............++..+. .++...+.
T Consensus 160 ~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 238 (342)
T 1y1p_A 160 KAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLF-NGEVSPAL 238 (342)
T ss_dssp HHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHH-TTCCCHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHH-cCCCcccc
Confidence 3456789999999999998764 347899999999997543222223445555554 45555544
Q ss_pred cC-cccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH-----hhcc-C------CCCCccccChHH
Q 022280 209 HD-ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDRG-V------QSPADISMDITK 275 (300)
Q Consensus 209 ~~-~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~-~------~~~~~~~~~~~k 275 (300)
++ +.++|+|++|+|++++.+++++...+. .+ ++++..+|+.|+++ .... . .......+|++|
T Consensus 239 ~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~----~~-~~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~k 313 (342)
T 1y1p_A 239 ALMPPQYYVSAVDIGLLHLGCLVLPQIERR----RV-YGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAP 313 (342)
T ss_dssp HTCCSEEEEEHHHHHHHHHHHHHCTTCCSC----EE-EECCEEECHHHHHHHHHHHCTTSCCCCCCCCCCCCCCEECCHH
T ss_pred ccCCcCCEeEHHHHHHHHHHHHcCcccCCc----eE-EEeCCCCCHHHHHHHHHHHCCCccCCCCCCccccccccCChHH
Confidence 44 678999999999999999987543332 33 44567899999988 1110 0 011235689999
Q ss_pred HHHhcCC---Cc-CCHHHHHHHHHhhhc
Q 022280 276 LVQTLNI---DP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 276 ~~~~lg~---~p-~~~~~~l~~~~~~~~ 299 (300)
++++||| .+ ++++++|+++++||.
T Consensus 314 ~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 314 SLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp HHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred HHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 9999887 45 899999999999985
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=277.63 Aligned_cols=277 Identities=18% Similarity=0.205 Sum_probs=198.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh--hcCC---CceeEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL--DALP---HSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~--~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
++|+|||||||||||++|+++|+++| ++|+++.|+++...... ..++ .++.++++|++|++++..+++ +
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~ 77 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERG---YTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK---G 77 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT---T
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC---CEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc---C
Confidence 46899999999999999999999999 89999888865432211 1122 257788999999999888876 8
Q ss_pred CCEEEEcccccCccccccChh-hhhhcccccchHHHHHhhhhcc-CCeEEEeecccc-ccCCC--CCCCCCCCCC-----
Q 022280 77 PDVVVNCAALSVPRVCENDPD-SAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQV-YEGVK--SFYKEEDEIA----- 146 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~-~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~-~~~~~--~~~~E~~~~~----- 146 (300)
+|+|||+|+.... ...++. ..+++|+.|+. +++++|.+.+ +++|||+||..+ |+... .+++|+++..
T Consensus 78 ~d~Vih~A~~~~~--~~~~~~~~~~~~nv~gt~-~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~ 154 (337)
T 2c29_D 78 CTGVFHVATPMDF--ESKDPENEVIKPTIEGML-GIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCR 154 (337)
T ss_dssp CSEEEECCCCCCS--SCSSHHHHTHHHHHHHHH-HHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHH
T ss_pred CCEEEEeccccCC--CCCChHHHHHHHHHHHHH-HHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhc
Confidence 9999999986532 222343 57899999996 9999999877 899999999874 44322 2567775321
Q ss_pred ----CCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHH--HHHhcCCceeeccCcccCce
Q 022280 147 ----PVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWID--SVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 147 ----p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i 216 (300)
|.+.|+.||.++|.+++.+ +.+++++||++||||+..... ...+.. ..+ .+...........+|+
T Consensus 155 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~----~~~~~~~~~~~-~g~~~~~~~~~~~~~i 229 (337)
T 2c29_D 155 AKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSM----PPSLITALSPI-TGNEAHYSIIRQGQFV 229 (337)
T ss_dssp HHCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSC----CHHHHHHTHHH-HTCGGGHHHHTEEEEE
T ss_pred ccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCC----CchHHHHHHHH-cCCCccccccCCCCEE
Confidence 4457999999999988654 468999999999999753221 111111 112 2222211111234599
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhh---c-c--C--------CCCCccccChHHHHHhcCC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD---R-G--V--------QSPADISMDITKLVQTLNI 282 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~---~-~--~--------~~~~~~~~~~~k~~~~lg~ 282 (300)
|++|+|++++++++++...+ .|++++ ..+|+.|+++.. . . . .......+|++|+ ++|||
T Consensus 230 ~v~Dva~a~~~~~~~~~~~~-----~~~~~~-~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~-~~lG~ 302 (337)
T 2c29_D 230 HLDDLCNAHIYLFENPKAEG-----RYICSS-HDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKL-TDLGF 302 (337)
T ss_dssp EHHHHHHHHHHHHHCTTCCE-----EEEECC-EEEEHHHHHHHHHHHCTTSCCCSCCTTCCTTCCCCEECCHHH-HHHTC
T ss_pred EHHHHHHHHHHHhcCcccCc-----eEEEeC-CCCCHHHHHHHHHHHCCCccCCCCCCcccCCCccccccHHHH-HHcCC
Confidence 99999999999998743322 676655 568999988811 0 0 0 0123456899999 78999
Q ss_pred Cc-CCHHHHHHHHHhhhc
Q 022280 283 DP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 283 ~p-~~~~~~l~~~~~~~~ 299 (300)
+| ++++++|+++++|+.
T Consensus 303 ~p~~~l~e~l~~~~~~~~ 320 (337)
T 2c29_D 303 EFKYSLEDMFTGAVDTCR 320 (337)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHH
Confidence 99 899999999999974
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=266.33 Aligned_cols=252 Identities=29% Similarity=0.457 Sum_probs=205.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|||||||||||++++++|++ | ++|++++|+++.. .+ +.+|++|++++..+++.. ++|+||||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g---~~V~~~~r~~~~~--------~~---~~~Dl~~~~~~~~~~~~~-~~d~vi~~ 64 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-R---HEVIKVYNSSEIQ--------GG---YKLDLTDFPRLEDFIIKK-RPDVIINA 64 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-T---SCEEEEESSSCCT--------TC---EECCTTSHHHHHHHHHHH-CCSEEEEC
T ss_pred CEEEEECCCChhHHHHHHHHhc-C---CeEEEecCCCcCC--------CC---ceeccCCHHHHHHHHHhc-CCCEEEEC
Confidence 5799999999999999999994 8 8999999986421 11 789999999998888855 69999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY 163 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~ 163 (300)
||......+..+++..+++|+.++. ++++++.+.+. +||++||..+|+....+++|+++..|.+.|+.+|.++|.+++
T Consensus 65 a~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~-~iv~~SS~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~ 142 (273)
T 2ggs_A 65 AAMTDVDKCEIEKEKAYKINAEAVR-HIVRAGKVIDS-YIVHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFAL 142 (273)
T ss_dssp CCCCCHHHHHHCHHHHHHHHTHHHH-HHHHHHHHTTC-EEEEEEEGGGSCSSSCSBCTTSCCCCSSHHHHHHHHHHHHHC
T ss_pred CcccChhhhhhCHHHHHHHhHHHHH-HHHHHHHHhCC-eEEEEecceeEcCCCCCcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 9976544445578889999999996 99999998887 999999999998877789999999999999999999999998
Q ss_pred HHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccccccccccee
Q 022280 164 EKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243 (300)
Q Consensus 164 ~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ 243 (300)
. .+++++||+.+||+. .+.. ++......+..+...++ .++++|++|+|++++.+++++. .++|
T Consensus 143 ~--~~~~~iR~~~v~G~~-------~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~dva~~i~~~~~~~~------~g~~ 205 (273)
T 2ggs_A 143 Q--DDSLIIRTSGIFRNK-------GFPI-YVYKTLKEGKTVFAFKG-YYSPISARKLASAILELLELRK------TGII 205 (273)
T ss_dssp C--TTCEEEEECCCBSSS-------SHHH-HHHHHHHTTCCEEEESC-EECCCBHHHHHHHHHHHHHHTC------CEEE
T ss_pred C--CCeEEEecccccccc-------HHHH-HHHHHHHcCCCEEeecC-CCCceEHHHHHHHHHHHHhcCc------CCeE
Confidence 8 788999999999832 2222 23333445666666666 8899999999999999998743 2389
Q ss_pred eecCCCccCHHHHHH-----hhc-------------cCCCCCccccChHHHHHhcCCCc--CCHHHHH
Q 022280 244 NVGGPDRVSRVQMAE-----VDR-------------GVQSPADISMDITKLVQTLNIDP--VTYKDGV 291 (300)
Q Consensus 244 ni~~~~~~s~~e~~~-----~~~-------------~~~~~~~~~~~~~k~~~~lg~~p--~~~~~~l 291 (300)
|+++ +.+|+.|+++ ... ....+.+..+|++|++++|||+| .+++++|
T Consensus 206 ~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 206 HVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp ECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred EECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence 9999 9999999988 100 11224456899999999999999 4888764
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=280.27 Aligned_cols=277 Identities=19% Similarity=0.174 Sum_probs=194.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh---hhhc-CCCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL---LLDA-LPHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~---~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
+|+|||||||||||++|+++|+++| ++|+++.|+++.... +... ....+.++++|++|++++..+++ ++|
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~D 82 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKG---YAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIA---GCD 82 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTT---CEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHT---TCS
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC---CEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHc---CCC
Confidence 5799999999999999999999999 899988887553221 1110 12457788999999998888877 899
Q ss_pred EEEEcccccCccccccCh-hhhhhcccccchHHHHHhhhhcc-CCeEEEeecccc-ccCC--C--CCCCCCCCCC-----
Q 022280 79 VVVNCAALSVPRVCENDP-DSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQV-YEGV--K--SFYKEEDEIA----- 146 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~-~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~-~~~~--~--~~~~E~~~~~----- 146 (300)
+|||+|+.... ...++ ++.+++|+.|+. +++++|.+.+ +++|||+||.++ |+.. . .+++|+++..
T Consensus 83 ~Vih~A~~~~~--~~~~~~~~~~~~nv~gt~-~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (338)
T 2rh8_A 83 FVFHVATPVHF--ASEDPENDMIKPAIQGVV-NVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLT 159 (338)
T ss_dssp EEEEESSCCCC-----------CHHHHHHHH-HHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC----
T ss_pred EEEEeCCccCC--CCCCcHHHHHHHHHHHHH-HHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhcc
Confidence 99999986532 22234 348899999997 9999999885 899999999874 4321 1 2678876321
Q ss_pred ---C-CChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--------C
Q 022280 147 ---P-VNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--------D 210 (300)
Q Consensus 147 ---p-~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 210 (300)
| .+.|+.||.++|.+++.+ +.+++++||++||||+.....+.. . ..+...+ .+... .++ .
T Consensus 160 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~-~-~~~~~~~-~g~~~-~~~~~~~~~~~~ 235 (338)
T 2rh8_A 160 SAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSS-I-GLAMSLI-TGNEF-LINGMKGMQMLS 235 (338)
T ss_dssp ---CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHH-H-HHHHHHH-HTCHH-HHHHHHHHHHHH
T ss_pred ccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCch-H-HHHHHHH-cCCcc-cccccccccccc
Confidence 1 226999999999988654 568999999999999754322211 1 1111222 22222 111 1
Q ss_pred cccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhh---cc----C---C---CCCccccChHHHH
Q 022280 211 ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD---RG----V---Q---SPADISMDITKLV 277 (300)
Q Consensus 211 ~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~---~~----~---~---~~~~~~~~~~k~~ 277 (300)
+..+|+|++|+|++++++++++... +.||+++ ..+|+.|+++.. .. . . ......+|++|+
T Consensus 236 ~~~~~i~v~Dva~a~~~~~~~~~~~-----~~~~~~~-~~~s~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~k~- 308 (338)
T 2rh8_A 236 GSVSIAHVEDVCRAHIFVAEKESAS-----GRYICCA-ANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSKLIISSEKL- 308 (338)
T ss_dssp SSEEEEEHHHHHHHHHHHHHCTTCC-----EEEEECS-EEECHHHHHHHHHHHCTTSCCCCCCTTSCSSCSCCCCCHHH-
T ss_pred CcccEEEHHHHHHHHHHHHcCCCcC-----CcEEEec-CCCCHHHHHHHHHHhCCCCCCCCCCCCCCcCcceeechHHH-
Confidence 2238999999999999999874332 2688766 468999988811 00 0 0 011257899999
Q ss_pred HhcCCCc-CCHHHHHHHHHhhhc
Q 022280 278 QTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 278 ~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
++|||+| ++++++|+++++|+.
T Consensus 309 ~~lG~~p~~~l~~gl~~~~~~~~ 331 (338)
T 2rh8_A 309 VKEGFSFKYGIEEIYDESVEYFK 331 (338)
T ss_dssp HHHTCCCSCCHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHH
Confidence 6699999 799999999999974
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=272.03 Aligned_cols=276 Identities=22% Similarity=0.219 Sum_probs=194.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC-CCCc---hhhhhhcCC---CceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-STPL---PQLLLDALP---HSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r-~~~~---~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
+|+|||||||||||++++++|+++| ++|+++.| +++. ...+ ..++ ..+.++.+|++|++++..+++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--- 73 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENG---YSVNTTIRADPERKRDVSFL-TNLPGASEKLHFFNADLSNPDSFAAAIE--- 73 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEECCCC----CCCHHH-HTSTTHHHHEEECCCCTTCGGGGHHHHT---
T ss_pred CCEEEEECChhHHHHHHHHHHHHCC---CEEEEEEeCCccchhHHHHH-HhhhccCCceEEEecCCCCHHHHHHHHc---
Confidence 5799999999999999999999999 89999888 5422 2112 1121 246678899999999988887
Q ss_pred CCCEEEEcccccCccccccCh-hhhhhcccccchHHHHHhhhhc-cCCeEEEeeccccc-cCCC--CCCCCCCCC-----
Q 022280 76 QPDVVVNCAALSVPRVCENDP-DSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQVY-EGVK--SFYKEEDEI----- 145 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~-~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~~~-~~~~--~~~~E~~~~----- 145 (300)
++|+|||+|+... ....++ +..+++|+.|+. +++++|.+. ++++|||+||..++ +... .+++|+++.
T Consensus 74 ~~d~vih~A~~~~--~~~~~~~~~~~~~nv~gt~-~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~ 150 (322)
T 2p4h_X 74 GCVGIFHTASPID--FAVSEPEEIVTKRTVDGAL-GILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLL 150 (322)
T ss_dssp TCSEEEECCCCC----------CHHHHHHHHHHH-HHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHH
T ss_pred CCCEEEEcCCccc--CCCCChHHHHHHHHHHHHH-HHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhh
Confidence 8999999997542 222233 458899999996 999999987 78999999998754 3322 257777642
Q ss_pred ---CCCC-hhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 146 ---APVN-VYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 146 ---~p~~-~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
.|.. .|+.||.++|.+++++ +.+++++||+++|||......+. .. ..+...+ .+....+ +....+|+|
T Consensus 151 ~~~~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~-~~-~~~~~~~-~g~~~~~-~~~~~~~i~ 226 (322)
T 2p4h_X 151 RSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPD-SI-EKALVLV-LGKKEQI-GVTRFHMVH 226 (322)
T ss_dssp HHHCCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCH-HH-HHHTHHH-HSCGGGC-CEEEEEEEE
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCc-hH-HHHHHHH-hCCCccC-cCCCcCEEE
Confidence 2333 6999999999988764 45789999999999975322111 11 1111222 2322222 222338999
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhh---c-cC-------CC----CCccccChHHHHHhcCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD---R-GV-------QS----PADISMDITKLVQTLNI 282 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~---~-~~-------~~----~~~~~~~~~k~~~~lg~ 282 (300)
++|+|++++++++.+...+ .|| ++++.+|+.|+++.. . .. .. .....+|++|+ ++|||
T Consensus 227 v~Dva~a~~~~~~~~~~~g-----~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~-~~lG~ 299 (322)
T 2p4h_X 227 VDDVARAHIYLLENSVPGG-----RYN-CSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKL-VDAGF 299 (322)
T ss_dssp HHHHHHHHHHHHHSCCCCE-----EEE-CCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTCCCEECCEECCHHH-HHTTC
T ss_pred HHHHHHHHHHHhhCcCCCC-----CEE-EcCCCCCHHHHHHHHHHhCCCCCCCCCccccCCCCCcceecccHHH-HHhCC
Confidence 9999999999997643222 588 567889999988810 0 00 00 02356899999 66999
Q ss_pred Cc-CCHHHHHHHHHhhhc
Q 022280 283 DP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 283 ~p-~~~~~~l~~~~~~~~ 299 (300)
+| ++++++|+++++|+.
T Consensus 300 ~p~~~~~~~l~~~~~~~~ 317 (322)
T 2p4h_X 300 DFKYTIEDMFDDAIQCCK 317 (322)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 99 799999999999974
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=273.33 Aligned_cols=277 Identities=14% Similarity=0.112 Sum_probs=208.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccC--CCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEG--KPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~--~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+|+|||||||||||++|+++|+++|. ..++|++++|+++... + ...++.++.+|++|++++.++++...++|+|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~v 76 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-H---EDNPINYVQCDISDPDDSQAKLSPLTDVTHV 76 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-C---CSSCCEEEECCTTSHHHHHHHHTTCTTCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-c---ccCceEEEEeecCCHHHHHHHHhcCCCCCEE
Confidence 47999999999999999999999981 1147999999865432 1 1346778899999999888888754239999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhc--cCCeEE-------EeeccccccCCC---CCCCCCCCCCC-
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLI-------HLSTDQVYEGVK---SFYKEEDEIAP- 147 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v-------~~SS~~~~~~~~---~~~~E~~~~~p- 147 (300)
||+|+... .+++..+++|+.++. +++++|++. +++++| |+||..+||... .+++|+++..|
T Consensus 77 ih~a~~~~-----~~~~~~~~~n~~~~~-~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~~~~~ 150 (364)
T 2v6g_A 77 FYVTWANR-----STEQENCEANSKMFR-NVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKY 150 (364)
T ss_dssp EECCCCCC-----SSHHHHHHHHHHHHH-HHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSCCCSS
T ss_pred EECCCCCc-----chHHHHHHHhHHHHH-HHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccccCCcc
Confidence 99999653 357788999999996 999999987 788998 799999999853 47899987765
Q ss_pred CChhHHHHHHHHHHHHHH----c-CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHH--hcCCceeeccC-----cccCc
Q 022280 148 VNVYGKSKVAAEKFIYEK----C-SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVL--SKGEKVEFFHD-----ECRCP 215 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~----~-~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~ 215 (300)
.+.|. .+|++++++ + .+++++||+.+|||+... ....+...++...+ ..+.++.++++ ...++
T Consensus 151 ~~~y~----~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 225 (364)
T 2v6g_A 151 MNFYY----DLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYS-MMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDC 225 (364)
T ss_dssp CCHHH----HHHHHHHHHHTTSTTCEEEEEEESSEECCCTTC-SSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCC
T ss_pred chhhH----HHHHHHHHHhhcCCCceEEEECCCceeCCCCCc-ccchHHHHHHHHHHHHhcCCceecCCCcccccccCCC
Confidence 66784 356666554 3 678999999999998642 12222222233333 34566665664 23678
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH-----hhc--cCC------------------------
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-----VDR--GVQ------------------------ 264 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~--~~~------------------------ 264 (300)
+|++|+|++++.+++++...++ +||+++++.+|+.|+++ ... ...
T Consensus 226 ~~v~Dva~a~~~~~~~~~~~g~----~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 301 (364)
T 2v6g_A 226 SDADLIAEHHIWAAVDPYAKNE----AFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVWEEIVR 301 (364)
T ss_dssp EEHHHHHHHHHHHHHCGGGTTE----EEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCCCc----eEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHHHHHHHH
Confidence 8899999999999988654444 99999999999999987 110 000
Q ss_pred ----CC-----------------Cc-cccChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 265 ----SP-----------------AD-ISMDITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 265 ----~~-----------------~~-~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
.+ .+ ..+|++|+++ |||+| ++++++|+++++|+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~ 358 (364)
T 2v6g_A 302 ENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAK 358 (364)
T ss_dssp HTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHH
T ss_pred HhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHH
Confidence 00 22 4789999987 99999 999999999999974
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=256.03 Aligned_cols=258 Identities=15% Similarity=0.106 Sum_probs=189.4
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|||||||||||||++|+++|+++| ++|+++.|++... . +..|-. ..+.+.++|+|||+
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G---~~V~~l~R~~~~~---------~---~~~~~~-------~~~~l~~~d~vihl 58 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG---HEVTLVSRKPGPG---------R---ITWDEL-------AASGLPSCDAAVNL 58 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCTT---------E---EEHHHH-------HHHCCCSCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCCcC---------e---eecchh-------hHhhccCCCEEEEe
Confidence 689999999999999999999999 8999999975431 1 222211 12234589999999
Q ss_pred ccccCcc----ccccChhhhhhcccccchHHHHHhhhhccCC--eEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHH
Q 022280 84 AALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTENKEN--LLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 84 a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~--~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~ 156 (300)
|+..... ++.......++.|+.++. ++++++...+.+ ++|+.||..+|+.... +++|+++..|...|+..|.
T Consensus 59 a~~~i~~~~~~~~~~~~~~~~~~~v~~t~-~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~~~~~~~~~~~~ 137 (298)
T 4b4o_A 59 AGENILNPLRRWNETFQKEVLGSRLETTQ-LLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVT 137 (298)
T ss_dssp CCCCSSCTTSCCCHHHHHHHHHHHHHHHH-HHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCCSCSSHHHHHHH
T ss_pred ccCcccchhhhhhhhhhhhhhhHHHHHHH-HHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCccccchhHHHHH
Confidence 9854322 222334567889999995 999998886654 5889999999999776 8999999999999998888
Q ss_pred HHHHHHHH--HcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceee-ccCcccCceeHHHHHHHHHHHHhccc
Q 022280 157 AAEKFIYE--KCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEF-FHDECRCPVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 157 ~~e~~~~~--~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~D~a~~~~~~~~~~~ 233 (300)
..|..... .+.+++++|++.||||+.. .... +......+....+ .|++.++|||++|+|+++..+++++.
T Consensus 138 ~~e~~~~~~~~~~~~~~~r~~~v~g~~~~------~~~~-~~~~~~~~~~~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~ 210 (298)
T 4b4o_A 138 KWEAAARLPGDSTRQVVVRSGVVLGRGGG------AMGH-MLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANH 210 (298)
T ss_dssp HHHHHHCCSSSSSEEEEEEECEEECTTSH------HHHH-HHHHHHTTCCCCBTTSCSBCCEEEHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhccCCceeeeeeeeEEcCCCC------chhH-HHHHHhcCCcceecccCceeecCcHHHHHHHHHHHHhCCC
Confidence 88775432 2346799999999999742 1222 2222323333222 23578999999999999999999865
Q ss_pred cccccccceeeecCCCccCHHHHHH-----hhccCCCC-------------------CccccChHHHHHhcCCCc-C-CH
Q 022280 234 SEDKQMQLLLNVGGPDRVSRVQMAE-----VDRGVQSP-------------------ADISMDITKLVQTLNIDP-V-TY 287 (300)
Q Consensus 234 ~~~~~~~~i~ni~~~~~~s~~e~~~-----~~~~~~~~-------------------~~~~~~~~k~~~~lg~~p-~-~~ 287 (300)
..+ +||+++++++|+.|+++ +......+ .+..++++|++ ++||++ + ++
T Consensus 211 ~~g-----~yn~~~~~~~t~~e~~~~ia~~lgrp~~~pvP~~~~~~~~g~~~~~~~l~~~rv~~~kl~-~~Gf~f~yp~l 284 (298)
T 4b4o_A 211 VHG-----VLNGVAPSSATNAEFAQTFGAALGRRAFIPLPSAVVQAVFGRQRAIMLLEGQKVIPRRTL-ATGYQYSFPEL 284 (298)
T ss_dssp CCE-----EEEESCSCCCBHHHHHHHHHHHHTCCCCCCBCHHHHHHHHCHHHHHHHHCCCCBCCHHHH-HTTCCCSCCSH
T ss_pred CCC-----eEEEECCCccCHHHHHHHHHHHhCcCCcccCCHHHHHHHhcchhHHHhhCCCEEcHHHHH-HCCCCCCCCCH
Confidence 443 89999999999999888 11111111 12456789994 599999 4 79
Q ss_pred HHHHHHHHhh
Q 022280 288 KDGVKLTLAA 297 (300)
Q Consensus 288 ~~~l~~~~~~ 297 (300)
+++|+++++.
T Consensus 285 ~~al~~l~~~ 294 (298)
T 4b4o_A 285 GAALKEIAEN 294 (298)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999999874
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=267.59 Aligned_cols=278 Identities=15% Similarity=0.092 Sum_probs=203.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch---hhhhh------------cCCCceeEEEeecCCchh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP---QLLLD------------ALPHSFVFFDVDLKSGSG 66 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~---~~~~~------------~~~~~~~~~~~D~~~~~~ 66 (300)
.+|+|||||||||||++|+++|+++| ++|++++|+++.. ..+.+ ....++.++.+|++|+++
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 144 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGYS---HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD 144 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTTE---EEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcCC---CEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence 36799999999999999999999999 9999999997622 11111 113578889999999887
Q ss_pred HHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCC------CCCCC
Q 022280 67 FDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV------KSFYK 140 (300)
Q Consensus 67 ~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~------~~~~~ 140 (300)
+. .+.++|+|||||+.... ..++...+++|+.++. +++++|.+ +.++|||+||..+ |.. ..+++
T Consensus 145 l~----~~~~~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~-~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~ 214 (427)
T 4f6c_A 145 VV----LPENMDTIIHAGARTDH---FGDDDEFEKVNVQGTV-DVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFS 214 (427)
T ss_dssp CC----CSSCCSEEEECCCCC----------CHHHHHHHHHH-HHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEEC
T ss_pred CC----CcCCCCEEEECCcccCC---CCCHHHHHHHHHHHHH-HHHHHHHh-cCCcEEEECchHh-CCCccCCCCCcccc
Confidence 77 44599999999997643 2466788999999996 99999998 7789999999998 442 23788
Q ss_pred CCCC---CCCCChhHHHHHHHHHHHHHH---cCCceeEeeeeeeCCCCCCCCCC----CchHHHHHHHHhcCCceeec-c
Q 022280 141 EEDE---IAPVNVYGKSKVAAEKFIYEK---CSNFAILRSSIIYGPQTISPVPK----SLPIQWIDSVLSKGEKVEFF-H 209 (300)
Q Consensus 141 E~~~---~~p~~~Y~~sK~~~e~~~~~~---~~~~~ilR~~~v~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~ 209 (300)
|+++ ..|.+.|+.+|..+|.+++++ +.+++++||++|||+........ .....++.... ....++.. +
T Consensus 215 E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 293 (427)
T 4f6c_A 215 EADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLL-QLDCIGVSMA 293 (427)
T ss_dssp TTCSCSSCCCCSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHH-HSSEEEHHHH
T ss_pred ccccccCCCCCCchHHHHHHHHHHHHHHHHcCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHH-hcCCCCCccc
Confidence 8887 557899999999999999885 45899999999999986432211 12334454444 34444432 4
Q ss_pred CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhhccCC-------------------------
Q 022280 210 DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGVQ------------------------- 264 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~~~~------------------------- 264 (300)
+..++|+|++|+|++++.++..+. .++ +||+++++.+++.|+++......
T Consensus 294 ~~~~~~v~v~DvA~ai~~~~~~~~-~g~----~~~l~~~~~~s~~el~~~i~~~g~~~~~~~~~~~~l~~~~~~~~~~~~ 368 (427)
T 4f6c_A 294 EMPVDFSFVDTTARQIVALAQVNT-PQI----IYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLT 368 (427)
T ss_dssp TCEECCEEHHHHHHHHHHHTTSCC-CCS----EEEESCSCCEEHHHHHHHHHSSCCEEECHHHHHHHHHHTTCHHHHHHH
T ss_pred cceEEEeeHHHHHHHHHHHHcCCC-CCC----EEEecCCCCCcHHHHHHHHHHcCCcccCHHHHHHHHHhcCchhhhhhh
Confidence 678999999999999999998865 333 99999999999999988221100
Q ss_pred ----CCCccccChHHHH---HhcCCCcC-CHHHHHHHHHhhh
Q 022280 265 ----SPADISMDITKLV---QTLNIDPV-TYKDGVKLTLAAE 298 (300)
Q Consensus 265 ----~~~~~~~~~~k~~---~~lg~~p~-~~~~~l~~~~~~~ 298 (300)
......+|+++.. +.+||.+. .-++.++.+++++
T Consensus 369 ~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l 410 (427)
T 4f6c_A 369 SVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYI 410 (427)
T ss_dssp HHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHH
T ss_pred hccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 1123456777766 55699884 3355788877765
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=250.79 Aligned_cols=230 Identities=14% Similarity=0.063 Sum_probs=188.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
||+|||||||||||++++++|+++| ++|++++|++.... ..++.++.+|++|++++..+++ ++|+|||
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~------~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~ 69 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLA---HEVRLSDIVDLGAA------EAHEEIVACDLADAQAVHDLVK---DCDGIIH 69 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTE---EEEEECCSSCCCCC------CTTEEECCCCTTCHHHHHHHHT---TCSEEEE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCC---CEEEEEeCCCcccc------CCCccEEEccCCCHHHHHHHHc---CCCEEEE
Confidence 5799999999999999999999999 99999999865321 1356778999999988888876 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC--CCCCCCCCCCCCChhHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK--SFYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~--~~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
+|+... ...++..+++|+.++. ++++++.+.++++||++||..+|+... .+++|+++..|.+.|+.+|..+|.
T Consensus 70 ~a~~~~----~~~~~~~~~~n~~~~~-~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~ 144 (267)
T 3ay3_A 70 LGGVSV----ERPWNDILQANIIGAY-NLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGED 144 (267)
T ss_dssp CCSCCS----CCCHHHHHHHTHHHHH-HHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCCSHHHHHHHHHHH
T ss_pred CCcCCC----CCCHHHHHHHHHHHHH-HHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Confidence 999752 3356788999999996 999999998999999999999998754 389999999999999999999999
Q ss_pred HHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccccc
Q 022280 161 FIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSED 236 (300)
Q Consensus 161 ~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~ 236 (300)
+++.+ +.+++++||+.+|+.. . .+...++|+|++|+|++++.+++++....
T Consensus 145 ~~~~~~~~~gi~~~~lrp~~v~~~~------~-------------------~~~~~~~~~~~~dva~~~~~~~~~~~~~~ 199 (267)
T 3ay3_A 145 LASLYYHKFDIETLNIRIGSCFPKP------K-------------------DARMMATWLSVDDFMRLMKRAFVAPKLGC 199 (267)
T ss_dssp HHHHHHHTTCCCEEEEEECBCSSSC------C-------------------SHHHHHHBCCHHHHHHHHHHHHHSSCCCE
T ss_pred HHHHHHHHcCCCEEEEeceeecCCC------C-------------------CCCeeeccccHHHHHHHHHHHHhCCCCCc
Confidence 98765 4578999999998421 0 01124578999999999999998854332
Q ss_pred ccccceeeecCCCccCHHHHHHhhccCCCCCccccChHHHHHhcCCCc-CCHHHHHHHHHh
Q 022280 237 KQMQLLLNVGGPDRVSRVQMAEVDRGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLA 296 (300)
Q Consensus 237 ~~~~~i~ni~~~~~~s~~e~~~~~~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~ 296 (300)
.+||+.++.. ....|..++ +.|||+| .+++++++++.+
T Consensus 200 ----~~~~~~~~~~-----------------~~~~d~~~~-~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 200 ----TVVYGASANT-----------------ESWWDNDKS-AFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp ----EEEEECCSCS-----------------SCCBCCGGG-GGGCCCCCCCGGGGHHHHHH
T ss_pred ----eeEecCCCcc-----------------ccccCHHHH-HHcCCCCCCCHHHHHHHHHh
Confidence 3788866432 133577777 8899999 899999999876
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=251.70 Aligned_cols=246 Identities=14% Similarity=0.096 Sum_probs=191.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhc--cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEI--EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~--g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
|+|||||||||||++++++|+++ | ++|++++|++++...+.. .++.++.+|++|++++.++++ ++|+||
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~~~l~~---~~~~~~~~D~~d~~~l~~~~~---~~d~vi 71 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA---SQIIAIVRNVEKASTLAD---QGVEVRHGDYNQPESLQKAFA---GVSKLL 71 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG---GGEEEEESCTTTTHHHHH---TTCEEEECCTTCHHHHHHHTT---TCSEEE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC---CeEEEEEcCHHHHhHHhh---cCCeEEEeccCCHHHHHHHHh---cCCEEE
Confidence 57999999999999999999999 9 899999998766544432 356778999999988887776 899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
|+|+... .. ++|+.++. +++++|++.++++||++||..+|.. ...|+.+|..+|++
T Consensus 72 ~~a~~~~--------~~--~~n~~~~~-~l~~a~~~~~~~~~v~~Ss~~~~~~-------------~~~y~~~K~~~E~~ 127 (287)
T 2jl1_A 72 FISGPHY--------DN--TLLIVQHA-NVVKAARDAGVKHIAYTGYAFAEES-------------IIPLAHVHLATEYA 127 (287)
T ss_dssp ECCCCCS--------CH--HHHHHHHH-HHHHHHHHTTCSEEEEEEETTGGGC-------------CSTHHHHHHHHHHH
T ss_pred EcCCCCc--------Cc--hHHHHHHH-HHHHHHHHcCCCEEEEECCCCCCCC-------------CCchHHHHHHHHHH
Confidence 9998521 11 56888886 9999999999999999999988631 24799999999999
Q ss_pred HHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccc
Q 022280 162 IYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQL 241 (300)
Q Consensus 162 ~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~ 241 (300)
+++.+.+++++||+.++|+... .++...+..+......+++.++|+|++|+|++++.+++++...++
T Consensus 128 ~~~~~~~~~ilrp~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~---- 194 (287)
T 2jl1_A 128 IRTTNIPYTFLRNALYTDFFVN---------EGLRASTESGAIVTNAGSGIVNSVTRNELALAAATVLTEEGHENK---- 194 (287)
T ss_dssp HHHTTCCEEEEEECCBHHHHSS---------GGGHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHTSSSCTTE----
T ss_pred HHHcCCCeEEEECCEeccccch---------hhHHHHhhCCceeccCCCCccCccCHHHHHHHHHHHhcCCCCCCc----
Confidence 9998889999999988875411 122333333433333356788999999999999999987543333
Q ss_pred eeeecCCCccCHHHHHHh-----hcc------C-----------CCC----------------CccccChHHHHHhcCCC
Q 022280 242 LLNVGGPDRVSRVQMAEV-----DRG------V-----------QSP----------------ADISMDITKLVQTLNID 283 (300)
Q Consensus 242 i~ni~~~~~~s~~e~~~~-----~~~------~-----------~~~----------------~~~~~~~~k~~~~lg~~ 283 (300)
+||+++++.+|+.|+++. ... . ..+ ....+|++|++++|| .
T Consensus 195 ~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG-~ 273 (287)
T 2jl1_A 195 TYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSDDLQKLIG-S 273 (287)
T ss_dssp EEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHS-S
T ss_pred EEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCchHHHHHhC-C
Confidence 999999999999999880 000 0 001 124567899999999 5
Q ss_pred cCCHHHHHHHHHh
Q 022280 284 PVTYKDGVKLTLA 296 (300)
Q Consensus 284 p~~~~~~l~~~~~ 296 (300)
+++++++|+++++
T Consensus 274 ~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 274 LTPLKETVKQALK 286 (287)
T ss_dssp CCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHhc
Confidence 5999999999886
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=246.64 Aligned_cols=219 Identities=11% Similarity=0.109 Sum_probs=174.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
||+|||||||||||++++++|+++| ++|++++|+++.... +...+.++++|++|++++..+++ ++|+|||
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~ 73 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRG---FEVTAVVRHPEKIKI----ENEHLKVKKADVSSLDEVCEVCK---GADAVIS 73 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTT---CEEEEECSCGGGCCC----CCTTEEEECCCTTCHHHHHHHHT---TCSEEEE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC---CEEEEEEcCcccchh----ccCceEEEEecCCCHHHHHHHhc---CCCEEEE
Confidence 5899999999999999999999999 899999998654432 23578889999999998888887 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
+|+... .....+++|+.++. ++++++++.++++||++||..+|...+....|+++..|.+.|+.+|...|.++
T Consensus 74 ~a~~~~------~~~~~~~~n~~~~~-~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~e~~~ 146 (227)
T 3dhn_A 74 AFNPGW------NNPDIYDETIKVYL-TIIDGVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFYL 146 (227)
T ss_dssp CCCC------------CCSHHHHHHH-HHHHHHHHTTCSEEEEECCSTTSEEETTEEGGGTTCSCGGGHHHHHHHHHHHH
T ss_pred eCcCCC------CChhHHHHHHHHHH-HHHHHHHHhCCCEEEEeCChhhccCCCCCccccCCcchHHHHHHHHHHHHHHH
Confidence 998642 12237889999996 99999999999999999999988776665567777788999999999999888
Q ss_pred HHHc----CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccccccc
Q 022280 163 YEKC----SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQ 238 (300)
Q Consensus 163 ~~~~----~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~ 238 (300)
+.+. .+++++||+.+|||+..... +. .+....+.....++|+|++|+|++++.+++++...++
T Consensus 147 ~~~~~~~~~~~~ilrp~~v~g~~~~~~~---~~---------~~~~~~~~~~~~~~~i~~~Dva~ai~~~l~~~~~~g~- 213 (227)
T 3dhn_A 147 NFLMKEKEIDWVFFSPAADMRPGVRTGR---YR---------LGKDDMIVDIVGNSHISVEDYAAAMIDELEHPKHHQE- 213 (227)
T ss_dssp HTGGGCCSSEEEEEECCSEEESCCCCCC---CE---------EESSBCCCCTTSCCEEEHHHHHHHHHHHHHSCCCCSE-
T ss_pred HHHhhccCccEEEEeCCcccCCCccccc---ee---------ecCCCcccCCCCCcEEeHHHHHHHHHHHHhCccccCc-
Confidence 7765 36899999999999754221 10 1222222233348999999999999999999876666
Q ss_pred ccceeeecCCCccCHH
Q 022280 239 MQLLLNVGGPDRVSRV 254 (300)
Q Consensus 239 ~~~i~ni~~~~~~s~~ 254 (300)
+||++++++.++.
T Consensus 214 ---~~~~~~~~~~~~~ 226 (227)
T 3dhn_A 214 ---RFTIGYLEHHHHH 226 (227)
T ss_dssp ---EEEEECCSCCC--
T ss_pred ---EEEEEeehhcccC
Confidence 9999999988765
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=272.11 Aligned_cols=261 Identities=16% Similarity=0.099 Sum_probs=194.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+|+|||||||||||++|++.|+++| ++|++++|++.... .+.+|+.+.. ... +.++|+|||
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G---~~V~~l~R~~~~~~-----------~v~~d~~~~~--~~~---l~~~D~Vih 207 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG---HEVIQLVRKEPKPG-----------KRFWDPLNPA--SDL---LDGADVLVH 207 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESSSCCTT-----------CEECCTTSCC--TTT---TTTCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCCCcc-----------ceeecccchh--HHh---cCCCCEEEE
Confidence 7899999999999999999999999 89999999865431 1677876542 222 348999999
Q ss_pred cccccCcc-ccccChhhhhhcccccchHHHHHh-hhhccCCeEEEeeccccccC-CC-CCCCCCCCCCCCChhHHHHHHH
Q 022280 83 CAALSVPR-VCENDPDSAMSINVPSSLVNWLSS-FTENKENLLIHLSTDQVYEG-VK-SFYKEEDEIAPVNVYGKSKVAA 158 (300)
Q Consensus 83 ~a~~~~~~-~~~~~~~~~~~~nv~~~~~~l~~~-~~~~~~~~~v~~SS~~~~~~-~~-~~~~E~~~~~p~~~Y~~sK~~~ 158 (300)
||+..... .....+...+++|+.++. +++++ +++.++++|||+||.++|+. .. .+++|+++. |.+.|+.+|...
T Consensus 208 ~A~~~~~~~~~~~~~~~~~~~Nv~gt~-~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~-~~~~y~~~~~~~ 285 (516)
T 3oh8_A 208 LAGEPIFGRFNDSHKEAIRESRVLPTK-FLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESES-GDDFLAEVCRDW 285 (516)
T ss_dssp CCCC-----CCGGGHHHHHHHTHHHHH-HHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSCC-CSSHHHHHHHHH
T ss_pred CCCCccccccchhHHHHHHHHHHHHHH-HHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCCC-CcChHHHHHHHH
Confidence 99976432 234456788999999996 99998 56678899999999999993 33 378998877 788999999999
Q ss_pred HHHHH---HHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHhccc
Q 022280 159 EKFIY---EKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 159 e~~~~---~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~ 233 (300)
|.++. ..+.+++++||+++|||+.. .... +...+..+.. ...+ ++.++|+|++|+|++++.+++++.
T Consensus 286 E~~~~~~~~~gi~~~ilRp~~v~Gp~~~------~~~~-~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~ 357 (516)
T 3oh8_A 286 EHATAPASDAGKRVAFIRTGVALSGRGG------MLPL-LKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIVDAQ 357 (516)
T ss_dssp HHTTHHHHHTTCEEEEEEECEEEBTTBS------HHHH-HHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCEEEEEeeEEECCCCC------hHHH-HHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHhCcc
Confidence 87654 34568999999999998731 2222 2222222222 2333 467999999999999999999854
Q ss_pred cccccccceeeecCCCccCHHHHHHhhcc------------------CCC-------CCccccChHHHHHhcCCCc-CC-
Q 022280 234 SEDKQMQLLLNVGGPDRVSRVQMAEVDRG------------------VQS-------PADISMDITKLVQTLNIDP-VT- 286 (300)
Q Consensus 234 ~~~~~~~~i~ni~~~~~~s~~e~~~~~~~------------------~~~-------~~~~~~~~~k~~~~lg~~p-~~- 286 (300)
.. ++||+++++.+|+.|+++.... ... .....++++|++ .|||+| ++
T Consensus 358 ~~-----g~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~-~lG~~~~~~~ 431 (516)
T 3oh8_A 358 IS-----GPINAVAPNPVSNADMTKILATSMHRPAFIQIPSLGPKILLGSQGAEELALASQRTAPAALE-NLSHTFRYTD 431 (516)
T ss_dssp CC-----EEEEESCSCCEEHHHHHHHTTC---------------------CCGGGGGGCEEEECCHHHH-HTTCCCSCSS
T ss_pred cC-----CcEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhCCchhHHHhhcCCeechHHHH-HCCCCCCCCC
Confidence 33 3899999999999999981110 000 112346889996 699999 65
Q ss_pred HHHHHHHHHhhh
Q 022280 287 YKDGVKLTLAAE 298 (300)
Q Consensus 287 ~~~~l~~~~~~~ 298 (300)
++++|++++++.
T Consensus 432 l~e~l~~~l~~~ 443 (516)
T 3oh8_A 432 IGAAIAHELGYE 443 (516)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHhCcc
Confidence 999999998764
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=262.95 Aligned_cols=246 Identities=17% Similarity=0.175 Sum_probs=186.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhc---cCCCceeeecCCCCCchhh---hhhc---------------CCCceeEEEee
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEI---EGKPYDVAATHHSTPLPQL---LLDA---------------LPHSFVFFDVD 60 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~---g~~~~~v~~~~r~~~~~~~---~~~~---------------~~~~~~~~~~D 60 (300)
.+|+|||||||||||++|+++|+++ | ++|++++|+.+.... +.+. ...++.++.+|
T Consensus 72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g---~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 148 (478)
T 4dqv_A 72 ELRTVLLTGATGFLGRYLVLELLRRLDVD---GRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD 148 (478)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHHSCTT---CEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhcCCCC---CEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence 4789999999999999999999999 8 899999998654321 1111 13578889999
Q ss_pred cCCc------hhHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccC
Q 022280 61 LKSG------SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEG 134 (300)
Q Consensus 61 ~~~~------~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~ 134 (300)
++++ +.+..+++ ++|+|||||+.... .++...+++|+.++. +++++|.+.++++|||+||.++|+.
T Consensus 149 l~~~~~gld~~~~~~~~~---~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~-~ll~aa~~~~~~~~V~iSS~~v~~~ 220 (478)
T 4dqv_A 149 KSEPDLGLDQPMWRRLAE---TVDLIVDSAAMVNA----FPYHELFGPNVAGTA-ELIRIALTTKLKPFTYVSTADVGAA 220 (478)
T ss_dssp TTSGGGGCCHHHHHHHHH---HCCEEEECCSSCSB----SSCCEEHHHHHHHHH-HHHHHHTSSSCCCEEEEEEGGGGTT
T ss_pred CCCcccCCCHHHHHHHHc---CCCEEEECccccCC----cCHHHHHHHHHHHHH-HHHHHHHhCCCCeEEEEeehhhcCc
Confidence 9854 45666666 89999999998654 456778999999996 9999999999999999999999988
Q ss_pred CCC-CCCCCCCCCCCC-----------hhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCC--CCCCchHHHHH
Q 022280 135 VKS-FYKEEDEIAPVN-----------VYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISP--VPKSLPIQWID 196 (300)
Q Consensus 135 ~~~-~~~E~~~~~p~~-----------~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~--~~~~~~~~~~~ 196 (300)
... +++|+++..|.+ .|+.||..+|.+++++ +.+++++||++|||++.... ....++..++.
T Consensus 221 ~~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~ 300 (478)
T 4dqv_A 221 IEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVL 300 (478)
T ss_dssp SCTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHH
T ss_pred cCCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHH
Confidence 554 788887654443 4999999999999876 55899999999999864222 22233444444
Q ss_pred HHHhcCCceee-c-----c---CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCc--cCHHHHHH
Q 022280 197 SVLSKGEKVEF-F-----H---DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR--VSRVQMAE 258 (300)
Q Consensus 197 ~~~~~~~~~~~-~-----~---~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~--~s~~e~~~ 258 (300)
.....+..... . | +..++|+|++|+|++++.++.+........+++||+++++. +|+.|+++
T Consensus 301 ~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~ 373 (478)
T 4dqv_A 301 SLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVD 373 (478)
T ss_dssp HHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHH
T ss_pred HHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHH
Confidence 44433322111 1 1 35679999999999999999863211122345999999987 99999988
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=247.72 Aligned_cols=244 Identities=14% Similarity=0.129 Sum_probs=184.6
Q ss_pred eEEEEcCCccchHHHHHhhhhc--cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEI--EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~--g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+|||||||||||++++++|+++ | ++|++++|++++...+.. .++.++.+|++|++++..+++ ++|+|||
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~---~~d~vi~ 71 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA---SQIVAIVRNPAKAQALAA---QGITVRQADYGDEAALTSALQ---GVEKLLL 71 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG---GGEEEEESCTTTCHHHHH---TTCEEEECCTTCHHHHHHHTT---TCSEEEE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC---ceEEEEEcChHhhhhhhc---CCCeEEEcCCCCHHHHHHHHh---CCCEEEE
Confidence 5899999999999999999999 9 899999998766544432 356778999999988887776 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
+|+... ..|+.++. +++++|++.++++||++||..+|. . ...|+.+|..+|+++
T Consensus 72 ~a~~~~------------~~~~~~~~-~l~~a~~~~~~~~~v~~Ss~~~~~---~----------~~~y~~sK~~~e~~~ 125 (286)
T 2zcu_A 72 ISSSEV------------GQRAPQHR-NVINAAKAAGVKFIAYTSLLHADT---S----------PLGLADEHIETEKML 125 (286)
T ss_dssp CC--------------------CHHH-HHHHHHHHHTCCEEEEEEETTTTT---C----------CSTTHHHHHHHHHHH
T ss_pred eCCCCc------------hHHHHHHH-HHHHHHHHcCCCEEEEECCCCCCC---C----------cchhHHHHHHHHHHH
Confidence 998521 14778885 999999999999999999998872 1 247999999999999
Q ss_pred HHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeec-cCcccCceeHHHHHHHHHHHHhccccccccccc
Q 022280 163 YEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF-HDECRCPVYVRDVVKIILALTNRWLSEDKQMQL 241 (300)
Q Consensus 163 ~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~ 241 (300)
++.+.+++++||+.++++.. .++...+..+ .+... +++.++|+|++|+|++++.+++++...++
T Consensus 126 ~~~~~~~~ilrp~~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~---- 190 (286)
T 2zcu_A 126 ADSGIVYTLLRNGWYSENYL----------ASAPAALEHG-VFIGAAGDGKIASATRADYAAAAARVISEAGHEGK---- 190 (286)
T ss_dssp HHHCSEEEEEEECCBHHHHH----------TTHHHHHHHT-EEEESCTTCCBCCBCHHHHHHHHHHHHHSSSCTTC----
T ss_pred HHcCCCeEEEeChHHhhhhH----------HHhHHhhcCC-ceeccCCCCccccccHHHHHHHHHHHhcCCCCCCc----
Confidence 99889999999987665421 1123333233 33332 35788999999999999999987543333
Q ss_pred eeeecCCCccCHHHHHHh-----hcc-----------------CCCC----------------CccccChHHHHHhcCCC
Q 022280 242 LLNVGGPDRVSRVQMAEV-----DRG-----------------VQSP----------------ADISMDITKLVQTLNID 283 (300)
Q Consensus 242 i~ni~~~~~~s~~e~~~~-----~~~-----------------~~~~----------------~~~~~~~~k~~~~lg~~ 283 (300)
+||+++++.+|+.|+++. ... ...+ ....+|++|+++.|||+
T Consensus 191 ~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 270 (286)
T 2zcu_A 191 VYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTLSKLIGHP 270 (286)
T ss_dssp EEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCCHHHHHHTSC
T ss_pred eEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCchHHHHHhCcC
Confidence 999999999999999880 000 0001 12456789999999987
Q ss_pred cCCHHHHHHHHHhhh
Q 022280 284 PVTYKDGVKLTLAAE 298 (300)
Q Consensus 284 p~~~~~~l~~~~~~~ 298 (300)
|++++++|+++++||
T Consensus 271 ~~~~~e~l~~~~~~~ 285 (286)
T 2zcu_A 271 TTTLAESVSHLFNVN 285 (286)
T ss_dssp CCCHHHHHHGGGC--
T ss_pred CCCHHHHHHHHHhhc
Confidence 799999999999987
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=265.43 Aligned_cols=277 Identities=15% Similarity=0.098 Sum_probs=202.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh---hh------------hhcCCCceeEEEeecCCchhH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ---LL------------LDALPHSFVFFDVDLKSGSGF 67 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~---~~------------~~~~~~~~~~~~~D~~~~~~~ 67 (300)
+|+|||||||||||++|+++|+++| ++|+++.|+++... .+ ......++.++.+|+++++.+
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 226 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGYS---HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 226 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTTE---EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred CCeEEEECCccchHHHHHHHHHhcC---CEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence 5799999999999999999999999 99999999876321 11 112246788999999998777
Q ss_pred HHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCC------CCCCCC
Q 022280 68 DAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV------KSFYKE 141 (300)
Q Consensus 68 ~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~------~~~~~E 141 (300)
. ...++|+|||||+.... ...+...+++|+.++. +++++|.+ +.++|||+||..+ |.. ..+++|
T Consensus 227 ~----~~~~~D~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~-~ll~~a~~-~~~~~v~iSS~~v-G~~~~~~~~~~~~~E 296 (508)
T 4f6l_B 227 V----LPENMDTIIHAGARTDH---FGDDDEFEKVNVQGTV-DVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSE 296 (508)
T ss_dssp C----CSSCCSEEEECCCC-----------CCHHHHHHHHH-HHHHHHHT-TTCEEEEEEESCT-TSEECTTCSCCEECT
T ss_pred C----CccCCCEEEECCceecC---CCCHHHHhhhHHHHHH-HHHHHHHh-CCCcEEEeCChhh-ccCCccCCcCccccc
Confidence 6 33489999999997642 2356778899999996 99999988 6789999999998 432 237888
Q ss_pred CCC---CCCCChhHHHHHHHHHHHHHH---cCCceeEeeeeeeCCCCCCCCC----CCchHHHHHHHHhcCCceeec-cC
Q 022280 142 EDE---IAPVNVYGKSKVAAEKFIYEK---CSNFAILRSSIIYGPQTISPVP----KSLPIQWIDSVLSKGEKVEFF-HD 210 (300)
Q Consensus 142 ~~~---~~p~~~Y~~sK~~~e~~~~~~---~~~~~ilR~~~v~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~ 210 (300)
+++ ..|.+.|+.+|..+|++++.+ +.+++++||+.|||++...... ......++.... ....++.. ++
T Consensus 297 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~g~ 375 (508)
T 4f6l_B 297 ADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLL-QLDCIGVSMAE 375 (508)
T ss_dssp TCSCSSBCCCSHHHHHHHHHHHHHHHHHHTTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHT-TCSEEETTGGG
T ss_pred ccccccccCCCcHHHHHHHHHHHHHHHHHcCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHH-HcCCCCCCccC
Confidence 887 457889999999999999875 4589999999999997643211 112334444433 34444432 46
Q ss_pred cccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhhccC---------------------------
Q 022280 211 ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGV--------------------------- 263 (300)
Q Consensus 211 ~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~~~--------------------------- 263 (300)
+.++|+|++|+|++++.++.++. .+ ++||+++++.+++.|+++.....
T Consensus 376 ~~~~~v~v~DvA~ai~~~~~~~~-~~----~~~nl~~~~~~s~~el~~~i~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~ 450 (508)
T 4f6l_B 376 MPVDFSFVDTTARQIVALAQVNT-PQ----IIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTS 450 (508)
T ss_dssp SEEECEEHHHHHHHHHHHTTBCC-SC----SEEEESCSCEEEHHHHHHHHHSSCCEEECHHHHHHHHHTTCCHHHHHHHH
T ss_pred ceEEEEcHHHHHHHHHHHHhCCC-CC----CEEEeCCCCCCCHHHHHHHHHHcCCcccCHHHHHHHHHhcCCccchhccc
Confidence 78999999999999999998865 33 39999999999999988811100
Q ss_pred --CCCCccccChHHHH---HhcCCCc-CCHHHHHHHHHhhh
Q 022280 264 --QSPADISMDITKLV---QTLNIDP-VTYKDGVKLTLAAE 298 (300)
Q Consensus 264 --~~~~~~~~~~~k~~---~~lg~~p-~~~~~~l~~~~~~~ 298 (300)
.......+|+++.+ +.+||.+ ..-++.+.++++++
T Consensus 451 ~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~ 491 (508)
T 4f6l_B 451 VDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYI 491 (508)
T ss_dssp TGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHH
T ss_pred ccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Confidence 01123456777665 4569998 44477787777765
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=250.53 Aligned_cols=225 Identities=17% Similarity=0.294 Sum_probs=180.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhc-cCCCc-eeeecCCCCCchhhhhhcC-CCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEI-EGKPY-DVAATHHSTPLPQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~~~-~v~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
|++|+|||||||||||++++++|+++ | + +|++++|++.+...+...+ ..++.++.+|++|.+++..+++ ++
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g---~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---~~ 92 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTN---AKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE---GV 92 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCC---CSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTT---TC
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCC---CCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh---cC
Confidence 35689999999999999999999999 9 6 8999999865544443333 3468889999999988887776 89
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHH
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVA 157 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~ 157 (300)
|+|||+||......++.++...+++|+.|+. +++++|.+.++++||++||..++. |.+.|+.||.+
T Consensus 93 D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~-~l~~aa~~~~v~~~V~~SS~~~~~-------------p~~~Y~~sK~~ 158 (344)
T 2gn4_A 93 DICIHAAALKHVPIAEYNPLECIKTNIMGAS-NVINACLKNAISQVIALSTDKAAN-------------PINLYGATKLC 158 (344)
T ss_dssp SEEEECCCCCCHHHHHHSHHHHHHHHHHHHH-HHHHHHHHTTCSEEEEECCGGGSS-------------CCSHHHHHHHH
T ss_pred CEEEECCCCCCCCchhcCHHHHHHHHHHHHH-HHHHHHHhCCCCEEEEecCCccCC-------------CccHHHHHHHH
Confidence 9999999976544445577889999999996 999999999999999999977653 36789999999
Q ss_pred HHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC-ceeecc-CcccCceeHHHHHHHHHHH
Q 022280 158 AEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE-KVEFFH-DECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 158 ~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~v~D~a~~~~~~ 228 (300)
+|.+++.+. .+++++||++|||+.. ...+.+... +..++ ++.+.. +..++|+|++|+|++++.+
T Consensus 159 ~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~------~~i~~~~~~-~~~g~~~~~i~~~~~~r~~i~v~D~a~~v~~~ 231 (344)
T 2gn4_A 159 SDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG------SVVPFFKKL-VQNKASEIPITDIRMTRFWITLDEGVSFVLKS 231 (344)
T ss_dssp HHHHHHHGGGCCCSSCCEEEEECCCEETTCTT------SHHHHHHHH-HHHTCCCEEESCTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEeccEECCCC------CHHHHHHHH-HHcCCCceEEeCCCeEEeeEEHHHHHHHHHHH
Confidence 999998865 4679999999999863 223334433 33555 566553 4578899999999999999
Q ss_pred HhccccccccccceeeecCCCccCHHHHHH
Q 022280 229 TNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
+++.. .++ +||+.++ .+++.|+++
T Consensus 232 l~~~~-~g~----~~~~~~~-~~s~~el~~ 255 (344)
T 2gn4_A 232 LKRMH-GGE----IFVPKIP-SMKMTDLAK 255 (344)
T ss_dssp HHHCC-SSC----EEEECCC-EEEHHHHHH
T ss_pred Hhhcc-CCC----EEecCCC-cEEHHHHHH
Confidence 98753 333 8998776 699999998
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=239.30 Aligned_cols=207 Identities=16% Similarity=0.203 Sum_probs=171.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHhcCCCCEEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~d~vih 82 (300)
|+|||||||||||++++++|+++| ++|++++|++++...+ .++.++++|++| ++++.++++ ++|+|||
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~-----~~~~~~~~D~~d~~~~~~~~~~---~~d~vi~ 69 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD---YQIYAGARKVEQVPQY-----NNVKAVHFDVDWTPEEMAKQLH---GMDAIIN 69 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS---CEEEEEESSGGGSCCC-----TTEEEEECCTTSCHHHHHTTTT---TCSEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCccchhhc-----CCceEEEecccCCHHHHHHHHc---CCCEEEE
Confidence 589999999999999999999999 8999999986544322 568889999999 877777665 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
||+... ...+++|+.++. +++++|++.++++||++||..++++. +.+| +++.|.+.|+.+|.++|+++
T Consensus 70 ~ag~~~--------~~~~~~n~~~~~-~l~~a~~~~~~~~iv~~SS~~~~~~~--~~~e-~~~~~~~~Y~~sK~~~e~~~ 137 (219)
T 3dqp_A 70 VSGSGG--------KSLLKVDLYGAV-KLMQAAEKAEVKRFILLSTIFSLQPE--KWIG-AGFDALKDYYIAKHFADLYL 137 (219)
T ss_dssp CCCCTT--------SSCCCCCCHHHH-HHHHHHHHTTCCEEEEECCTTTTCGG--GCCS-HHHHHTHHHHHHHHHHHHHH
T ss_pred CCcCCC--------CCcEeEeHHHHH-HHHHHHHHhCCCEEEEECcccccCCC--cccc-cccccccHHHHHHHHHHHHH
Confidence 999754 236889999996 99999999999999999998776543 4556 55667889999999999999
Q ss_pred -HHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccc
Q 022280 163 -YEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQL 241 (300)
Q Consensus 163 -~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~ 241 (300)
+..+.+++++||+.+||+.... .+ ..++..++|++++|+|++++.+++++...++
T Consensus 138 ~~~~~i~~~ilrp~~v~g~~~~~-------------------~~-~~~~~~~~~i~~~Dva~~i~~~l~~~~~~g~---- 193 (219)
T 3dqp_A 138 TKETNLDYTIIQPGALTEEEATG-------------------LI-DINDEVSASNTIGDVADTIKELVMTDHSIGK---- 193 (219)
T ss_dssp HHSCCCEEEEEEECSEECSCCCS-------------------EE-EESSSCCCCEEHHHHHHHHHHHHTCGGGTTE----
T ss_pred HhccCCcEEEEeCceEecCCCCC-------------------cc-ccCCCcCCcccHHHHHHHHHHHHhCccccCc----
Confidence 6667799999999999985321 11 1246778999999999999999998665444
Q ss_pred eeeecCCCccCHHHHHH
Q 022280 242 LLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 242 i~ni~~~~~~s~~e~~~ 258 (300)
+||+++++ .++.|+.+
T Consensus 194 ~~~i~~g~-~~~~e~~~ 209 (219)
T 3dqp_A 194 VISMHNGK-TAIKEALE 209 (219)
T ss_dssp EEEEEECS-EEHHHHHH
T ss_pred EEEeCCCC-ccHHHHHH
Confidence 99998875 99999886
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=240.62 Aligned_cols=208 Identities=16% Similarity=0.119 Sum_probs=174.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|+||+|||||||||||++++++|+++| ++|++++|++.+.. ...+.++.+|++|++++..+++ ++|+|
T Consensus 1 m~~k~vlVTGasg~IG~~la~~L~~~G---~~V~~~~r~~~~~~------~~~~~~~~~Dl~d~~~~~~~~~---~~D~v 68 (267)
T 3rft_A 1 MAMKRLLVTGAAGQLGRVMRERLAPMA---EILRLADLSPLDPA------GPNEECVQCDLADANAVNAMVA---GCDGI 68 (267)
T ss_dssp CCEEEEEEESTTSHHHHHHHHHTGGGE---EEEEEEESSCCCCC------CTTEEEEECCTTCHHHHHHHHT---TCSEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcC---CEEEEEecCCcccc------CCCCEEEEcCCCCHHHHHHHHc---CCCEE
Confidence 678899999999999999999999999 89999999865433 3567889999999999888887 89999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC--CCCCCCCCCCCCChhHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK--SFYKEEDEIAPVNVYGKSKVAA 158 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~--~~~~E~~~~~p~~~Y~~sK~~~ 158 (300)
|||||.. ....++..+++|+.|+. ++++++++.+.++||++||..+|+... .+++|+.+..|.+.|+.||.+.
T Consensus 69 i~~Ag~~----~~~~~~~~~~~N~~g~~-~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 143 (267)
T 3rft_A 69 VHLGGIS----VEKPFEQILQGNIIGLY-NLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFG 143 (267)
T ss_dssp EECCSCC----SCCCHHHHHHHHTHHHH-HHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTTSCCCCCSHHHHHHHHH
T ss_pred EECCCCc----CcCCHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCCCCCCCCChHHHHHHHH
Confidence 9999974 33467889999999997 999999999999999999999997544 3899999999999999999999
Q ss_pred HHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccc
Q 022280 159 EKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLS 234 (300)
Q Consensus 159 e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~ 234 (300)
|.+++.+ +.+++++||+.|+|+... +...++|++++|+++++..+++.+..
T Consensus 144 e~~~~~~a~~~g~~~~~vr~~~v~~~~~~-------------------------~~~~~~~~~~~d~a~~~~~~~~~~~~ 198 (267)
T 3rft_A 144 ENLARMYFDKFGQETALVRIGSCTPEPNN-------------------------YRMLSTWFSHDDFVSLIEAVFRAPVL 198 (267)
T ss_dssp HHHHHHHHHHHCCCEEEEEECBCSSSCCS-------------------------TTHHHHBCCHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHhCCeEEEEEeecccCCCCC-------------------------CCceeeEEcHHHHHHHHHHHHhCCCC
Confidence 9988754 567899999999986321 11234689999999999999998665
Q ss_pred ccccccceeeecCCCccCHH
Q 022280 235 EDKQMQLLLNVGGPDRVSRV 254 (300)
Q Consensus 235 ~~~~~~~i~ni~~~~~~s~~ 254 (300)
++. ++++.+++..++.
T Consensus 199 ~~~----~~~~~s~~~~~~~ 214 (267)
T 3rft_A 199 GCP----VVWGASANDAGWW 214 (267)
T ss_dssp CSC----EEEECCCCTTCCB
T ss_pred Cce----EEEEeCCCCCCcc
Confidence 544 7888887654433
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=232.81 Aligned_cols=211 Identities=18% Similarity=0.202 Sum_probs=169.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCce-eEEEeecCCchhHHHHHHhcCCCCE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSF-VFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|++|+|||||||||||++++++|+++| ++|++++|+++....+.. .++ .++++|++ +++.+. ++++|+
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~~---~~~~~~~~~Dl~--~~~~~~---~~~~D~ 87 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKG---HEPVAMVRNEEQGPELRE---RGASDIVVANLE--EDFSHA---FASIDA 87 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHH---TTCSEEEECCTT--SCCGGG---GTTCSE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCC---CeEEEEECChHHHHHHHh---CCCceEEEcccH--HHHHHH---HcCCCE
Confidence 467999999999999999999999999 899999999776655543 256 78999999 444444 448999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAE 159 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e 159 (300)
|||+||.... ..++..+++|+.++. +++++|++.++++||++||...+.+. .++ .+.+.|+.+|.++|
T Consensus 88 vi~~ag~~~~----~~~~~~~~~n~~~~~-~l~~a~~~~~~~~iv~~SS~~~~~~~------~~~-~~~~~Y~~sK~~~e 155 (236)
T 3e8x_A 88 VVFAAGSGPH----TGADKTILIDLWGAI-KTIQEAEKRGIKRFIMVSSVGTVDPD------QGP-MNMRHYLVAKRLAD 155 (236)
T ss_dssp EEECCCCCTT----SCHHHHHHTTTHHHH-HHHHHHHHHTCCEEEEECCTTCSCGG------GSC-GGGHHHHHHHHHHH
T ss_pred EEECCCCCCC----CCccccchhhHHHHH-HHHHHHHHcCCCEEEEEecCCCCCCC------CCh-hhhhhHHHHHHHHH
Confidence 9999997542 468889999999996 99999999999999999996554332 111 45679999999999
Q ss_pred HHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeec--cCcccCceeHHHHHHHHHHHHhccccccc
Q 022280 160 KFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF--HDECRCPVYVRDVVKIILALTNRWLSEDK 237 (300)
Q Consensus 160 ~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 237 (300)
.+++..+.+++++||+.++|+.... .+... +.+.+++++++|+|++++++++++...++
T Consensus 156 ~~~~~~gi~~~~lrpg~v~~~~~~~-------------------~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~ 216 (236)
T 3e8x_A 156 DELKRSSLDYTIVRPGPLSNEESTG-------------------KVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGK 216 (236)
T ss_dssp HHHHHSSSEEEEEEECSEECSCCCS-------------------EEEEESSCSCCCCCEEHHHHHHHHHHHTTCGGGTTE
T ss_pred HHHHHCCCCEEEEeCCcccCCCCCC-------------------eEEeccCCCcccCcEeHHHHHHHHHHHhcCccccCC
Confidence 9999888899999999999985321 11222 23468999999999999999998754444
Q ss_pred cccceeeecCCCccCHHHHHH
Q 022280 238 QMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 238 ~~~~i~ni~~~~~~s~~e~~~ 258 (300)
+||++++ .+++.|+++
T Consensus 217 ----~~~v~~~-~~~~~e~~~ 232 (236)
T 3e8x_A 217 ----TFEVLNG-DTPIAKVVE 232 (236)
T ss_dssp ----EEEEEEC-SEEHHHHHH
T ss_pred ----eEEEeCC-CcCHHHHHH
Confidence 9999988 599999875
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=243.00 Aligned_cols=238 Identities=17% Similarity=0.192 Sum_probs=181.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
|+|||||||||||++|+++|+++| + +|++.+|+ +|++++..+++ ++|+|||
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g---~~~v~~~d~~----------------------~d~~~l~~~~~---~~d~Vih 52 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTT---DHHIFEVHRQ----------------------TKEEELESALL---KADFIVH 52 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHC---CCEEEECCTT----------------------CCHHHHHHHHH---HCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CCEEEEECCC----------------------CCHHHHHHHhc---cCCEEEE
Confidence 689999999999999999999999 6 77655543 66777888877 7999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
+|+.... .++...+++|+.++. +++++|++.+++ +|||+||..+|+ .+.|+.+|..+|++
T Consensus 53 ~a~~~~~----~~~~~~~~~n~~~~~-~l~~a~~~~~~~~~~v~~Ss~~~~~--------------~~~Y~~sK~~~E~~ 113 (369)
T 3st7_A 53 LAGVNRP----EHDKEFSLGNVSYLD-HVLDILTRNTKKPAILLSSSIQATQ--------------DNPYGESKLQGEQL 113 (369)
T ss_dssp CCCSBCT----TCSTTCSSSCCBHHH-HHHHHHTTCSSCCEEEEEEEGGGGS--------------CSHHHHHHHHHHHH
T ss_pred CCcCCCC----CCHHHHHHHHHHHHH-HHHHHHHHhCCCCeEEEeCchhhcC--------------CCCchHHHHHHHHH
Confidence 9997653 356778899999996 999999999987 999999999986 45899999999999
Q ss_pred HHH----HcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeec-cCcccCceeHHHHHHHHHHHHhcccccc
Q 022280 162 IYE----KCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF-HDECRCPVYVRDVVKIILALTNRWLSED 236 (300)
Q Consensus 162 ~~~----~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~a~~~~~~~~~~~~~~ 236 (300)
+++ .+.+++++||+++||++.... ...+...++.... .+..+.+. +++.++|+|++|+|++++.+++++...
T Consensus 114 ~~~~~~~~g~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~- 190 (369)
T 3st7_A 114 LREYAEEYGNTVYIYRWPNLFGKWCKPN-YNSVIATFCYKIA-RNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPTI- 190 (369)
T ss_dssp HHHHHHHHCCCEEEEEECEEECTTCCTT-SSCHHHHHHHHHH-TTCCCCCSCTTCEEEEEEHHHHHHHHHHHHHTCCCE-
T ss_pred HHHHHHHhCCCEEEEECCceeCCCCCCC-cchHHHHHHHHHH-cCCCeEecCCCeEEEEEEHHHHHHHHHHHHhCCccc-
Confidence 987 456899999999999976432 2334444554444 55555554 457899999999999999999986543
Q ss_pred ccccceeeecCCCccCHHHHHHhhc-------cCCC-CCccccChHHHHHhcCCCc-CCHHHHHHH
Q 022280 237 KQMQLLLNVGGPDRVSRVQMAEVDR-------GVQS-PADISMDITKLVQTLNIDP-VTYKDGVKL 293 (300)
Q Consensus 237 ~~~~~i~ni~~~~~~s~~e~~~~~~-------~~~~-~~~~~~~~~k~~~~lg~~p-~~~~~~l~~ 293 (300)
.+++||+++++.+|+.|+++... .... .....+........+||.| .+++.+++.
T Consensus 191 --~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~l~~ 254 (369)
T 3st7_A 191 --ENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYLSYLPSTDFSYPLLM 254 (369)
T ss_dssp --ETTEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHTSCTTCSCCCCCE
T ss_pred --CCceEEeCCCCceeHHHHHHHHHHHhCCCcccccCCCCCHHHHHHHHHHhcccCCcceeechhh
Confidence 02399999999999999998111 1111 1111222234445689998 676665543
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-31 Score=235.24 Aligned_cols=220 Identities=13% Similarity=0.131 Sum_probs=169.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch----hhhhhcCCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP----QLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|.+|+|||||||||||++|++.|+++| ++|+++.|++... ..+......++.++.+|++|.+++.++++.. +
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~-~ 83 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAH---RPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEH-E 83 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTT---CCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHT-T
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC---CCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhC-C
Confidence 445799999999999999999999999 8999999986221 1111111356888999999999999888876 8
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHH
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSK 155 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK 155 (300)
+|+|||+|+. .|+.++. +++++|++.+ +++||+ | +||. +.+|.++..|...|+.+|
T Consensus 84 ~d~Vi~~a~~---------------~n~~~~~-~l~~aa~~~g~v~~~v~-S---~~g~---~~~e~~~~~p~~~y~~sK 140 (346)
T 3i6i_A 84 IDIVVSTVGG---------------ESILDQI-ALVKAMKAVGTIKRFLP-S---EFGH---DVNRADPVEPGLNMYREK 140 (346)
T ss_dssp CCEEEECCCG---------------GGGGGHH-HHHHHHHHHCCCSEEEC-S---CCSS---CTTTCCCCTTHHHHHHHH
T ss_pred CCEEEECCch---------------hhHHHHH-HHHHHHHHcCCceEEee-c---ccCC---CCCccCcCCCcchHHHHH
Confidence 9999999985 2777885 9999999999 989886 3 4543 356777777888999999
Q ss_pred HHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHhccc
Q 022280 156 VAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 156 ~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~~~~ 233 (300)
..+|+++++.+.+++++||+.++|....... .... .....+.+.++++ +.++|+|++|+|++++.+++.+.
T Consensus 141 ~~~e~~l~~~g~~~tivrpg~~~g~~~~~~~------~~~~-~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~ 213 (346)
T 3i6i_A 141 RRVRQLVEESGIPFTYICCNSIASWPYYNNI------HPSE-VLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVR 213 (346)
T ss_dssp HHHHHHHHHTTCCBEEEECCEESSCCCSCC------------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHcCCCEEEEEecccccccCcccc------cccc-ccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999997532111 0000 1113445666654 57899999999999999999865
Q ss_pred cccccccceeeecC-CCccCHHHHHH
Q 022280 234 SEDKQMQLLLNVGG-PDRVSRVQMAE 258 (300)
Q Consensus 234 ~~~~~~~~i~ni~~-~~~~s~~e~~~ 258 (300)
..++ +||+++ ++.+|+.|+++
T Consensus 214 ~~~~----~~~i~g~~~~~s~~e~~~ 235 (346)
T 3i6i_A 214 TLNK----SVHFRPSCNCLNINELAS 235 (346)
T ss_dssp GTTE----EEECCCGGGEECHHHHHH
T ss_pred ccCe----EEEEeCCCCCCCHHHHHH
Confidence 4333 889875 57999999988
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-32 Score=223.95 Aligned_cols=214 Identities=13% Similarity=0.141 Sum_probs=143.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|||||||||||++++++|+++| ++|+++.|++++...+. ..+.++.+|++|+++ +.+ .++|+|||+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~----~~~~~~~~D~~d~~~--~~~---~~~d~vi~~ 68 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG---HEVTAIVRNAGKITQTH----KDINILQKDIFDLTL--SDL---SDQNVVVDA 68 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCSHHHHHHC----SSSEEEECCGGGCCH--HHH---TTCSEEEEC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC---CEEEEEEcCchhhhhcc----CCCeEEeccccChhh--hhh---cCCCEEEEC
Confidence 589999999999999999999999 89999999876554432 567889999999886 333 489999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC--CCCCCCCCCCCChhHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS--FYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~--~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
||.... ....|+.++. +++++|++.+++++|++||..++..... +..|+.+..|.+.|+.+|...|.+
T Consensus 69 ag~~~~---------~~~~~~~~~~-~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~ 138 (221)
T 3ew7_A 69 YGISPD---------EAEKHVTSLD-HLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQL 138 (221)
T ss_dssp CCSSTT---------TTTSHHHHHH-HHHHHHCSCCSSEEEEECCCC-------------------CCCSCCHHHHHHHH
T ss_pred CcCCcc---------ccchHHHHHH-HHHHHHHhcCCceEEEEecceEEEcCCCCccccccCCCCCHHHHHHHHHHHHHH
Confidence 997321 2456888885 9999999998899999999877655443 677777888888999999999987
Q ss_pred --HH--HHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccc
Q 022280 162 --IY--EKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDK 237 (300)
Q Consensus 162 --~~--~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 237 (300)
++ ..+.+++++||+.+||++.... .+. . ....+.+.++ ..++++++|+|++++.+++++...++
T Consensus 139 ~~~~~~~~gi~~~ivrp~~v~g~~~~~~-------~~~---~-~~~~~~~~~~-~~~~i~~~Dva~~~~~~l~~~~~~g~ 206 (221)
T 3ew7_A 139 EHLKSHQAEFSWTYISPSAMFEPGERTG-------DYQ---I-GKDHLLFGSD-GNSFISMEDYAIAVLDEIERPNHLNE 206 (221)
T ss_dssp HHHHTTTTTSCEEEEECSSCCCCC---------------------------------CCCHHHHHHHHHHHHHSCSCTTS
T ss_pred HHHHhhccCccEEEEeCcceecCCCccC-------ceE---e-ccccceecCC-CCceEeHHHHHHHHHHHHhCccccCC
Confidence 44 4556899999999999843211 011 0 1222333322 34799999999999999999766555
Q ss_pred cccceeeecCCCccCHHH
Q 022280 238 QMQLLLNVGGPDRVSRVQ 255 (300)
Q Consensus 238 ~~~~i~ni~~~~~~s~~e 255 (300)
.||++++...+.+|
T Consensus 207 ----~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 207 ----HFTVAGKLEHHHHH 220 (221)
T ss_dssp ----EEECCC--------
T ss_pred ----EEEECCCCcccccc
Confidence 99999988776554
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-32 Score=221.89 Aligned_cols=214 Identities=10% Similarity=0.066 Sum_probs=159.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|||||||||||++++++|+++| ++|+++.|+++....+ ....+.++.+|++|+++ ..+ .++|+|||+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~---~~~~~~~~~~D~~d~~~--~~~---~~~d~vi~~ 69 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG---HEVLAVVRDPQKAADR---LGATVATLVKEPLVLTE--ADL---DSVDAVVDA 69 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHH---TCTTSEEEECCGGGCCH--HHH---TTCSEEEEC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC---CEEEEEEecccccccc---cCCCceEEecccccccH--hhc---ccCCEEEEC
Confidence 579999999999999999999999 8999999986554433 24578889999999886 333 489999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC----CCCCCCCCCCCChhHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS----FYKEEDEIAPVNVYGKSKVAAE 159 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~----~~~E~~~~~p~~~Y~~sK~~~e 159 (300)
||.... ......|+.++. +++++|++.+ +++|++||.+++..... +.+|...+.|.+.|+.+|...|
T Consensus 70 ag~~~~-------~~~~~~n~~~~~-~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e 140 (224)
T 3h2s_A 70 LSVPWG-------SGRGYLHLDFAT-HLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYY 140 (224)
T ss_dssp CCCCTT-------SSCTHHHHHHHH-HHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGGSTTHHHHHHHHH
T ss_pred CccCCC-------cchhhHHHHHHH-HHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCCCCccchhhHHHHHHHH
Confidence 997511 112467899985 9999999999 89999999866554332 4556666667889999999999
Q ss_pred HHHH---HHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccccc
Q 022280 160 KFIY---EKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSED 236 (300)
Q Consensus 160 ~~~~---~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~ 236 (300)
.+.. ..+.+++++||+.+||++.... +. .....+. .++..+++++++|+|++++.+++++...+
T Consensus 141 ~~~~~~~~~~i~~~ivrp~~v~g~~~~~~----~~--------~~~~~~~-~~~~~~~~i~~~DvA~~~~~~l~~~~~~g 207 (224)
T 3h2s_A 141 EYQFLQMNANVNWIGISPSEAFPSGPATS----YV--------AGKDTLL-VGEDGQSHITTGNMALAILDQLEHPTAIR 207 (224)
T ss_dssp HHHHHTTCTTSCEEEEEECSBCCCCCCCC----EE--------EESSBCC-CCTTSCCBCCHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHHHhcCCCcEEEEcCccccCCCcccC----ce--------ecccccc-cCCCCCceEeHHHHHHHHHHHhcCccccC
Confidence 6522 2345899999999999854221 10 0112222 23456789999999999999999976665
Q ss_pred ccccceeeecCCCccCHH
Q 022280 237 KQMQLLLNVGGPDRVSRV 254 (300)
Q Consensus 237 ~~~~~i~ni~~~~~~s~~ 254 (300)
+ +|++++.+..+..
T Consensus 208 ~----~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 208 D----RIVVRDADLEHHH 221 (224)
T ss_dssp S----EEEEEECC-----
T ss_pred C----EEEEecCcchhcc
Confidence 5 9999987765543
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=225.85 Aligned_cols=245 Identities=11% Similarity=0.061 Sum_probs=181.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
|+|||||||||||+++++.|+++ | ++|+++.|++++...+. ..++.++.+|++|++++..+++ ++|+|||
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g---~~V~~~~R~~~~~~~~~---~~~v~~~~~D~~d~~~l~~~~~---~~d~vi~ 71 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI---DHFHIGVRNVEKVPDDW---RGKVSVRQLDYFNQESMVEAFK---GMDTVVF 71 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC---TTEEEEESSGGGSCGGG---BTTBEEEECCTTCHHHHHHHTT---TCSEEEE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC---CcEEEEECCHHHHHHhh---hCCCEEEEcCCCCHHHHHHHHh---CCCEEEE
Confidence 57999999999999999999998 8 89999999876544332 3568889999999988888776 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
+|+..... ..|+.++. +++++|++.++++||++||... ... . ...+...+..+|..+
T Consensus 72 ~a~~~~~~----------~~~~~~~~-~l~~aa~~~gv~~iv~~Ss~~~---~~~--------~-~~~~~~~~~~~e~~~ 128 (289)
T 3e48_A 72 IPSIIHPS----------FKRIPEVE-NLVYAAKQSGVAHIIFIGYYAD---QHN--------N-PFHMSPYFGYASRLL 128 (289)
T ss_dssp CCCCCCSH----------HHHHHHHH-HHHHHHHHTTCCEEEEEEESCC---STT--------C-CSTTHHHHHHHHHHH
T ss_pred eCCCCccc----------hhhHHHHH-HHHHHHHHcCCCEEEEEcccCC---CCC--------C-CCccchhHHHHHHHH
Confidence 99864321 23667774 9999999999999999999432 111 0 112334455788888
Q ss_pred HHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccce
Q 022280 163 YEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLL 242 (300)
Q Consensus 163 ~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i 242 (300)
+..+.+++++||+.++|+.. .++......+......+++.++|++++|+|++++.++..+...++ +
T Consensus 129 ~~~g~~~~ilrp~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~g~----~ 194 (289)
T 3e48_A 129 STSGIDYTYVRMAMYMDPLK----------PYLPELMNMHKLIYPAGDGRINYITRNDIARGVIAIIKNPDTWGK----R 194 (289)
T ss_dssp HHHCCEEEEEEECEESTTHH----------HHHHHHHHHTEECCCCTTCEEEEECHHHHHHHHHHHHHCGGGTTC----E
T ss_pred HHcCCCEEEEeccccccccH----------HHHHHHHHCCCEecCCCCceeeeEEHHHHHHHHHHHHcCCCcCCc----e
Confidence 88899999999999998631 234444433333333356788999999999999999998655444 9
Q ss_pred eeecCCCccCHHHHHHhh-----c--------------cCCCC----------------CccccChHHHHHhcCCCcCCH
Q 022280 243 LNVGGPDRVSRVQMAEVD-----R--------------GVQSP----------------ADISMDITKLVQTLNIDPVTY 287 (300)
Q Consensus 243 ~ni~~~~~~s~~e~~~~~-----~--------------~~~~~----------------~~~~~~~~k~~~~lg~~p~~~ 287 (300)
||++ ++.+|+.|+++.. . ....+ .......+.+++.+|++|+++
T Consensus 195 ~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~p~~~ 273 (289)
T 3e48_A 195 YLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLDQESNDFKQLVNDQPQTL 273 (289)
T ss_dssp EEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTCCCCSHHHHHHSSCCCCH
T ss_pred EEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCccccCchHHHHhCCCCCCH
Confidence 9999 9999999998800 0 00000 112345667788899999999
Q ss_pred HHHHHHHH
Q 022280 288 KDGVKLTL 295 (300)
Q Consensus 288 ~~~l~~~~ 295 (300)
++.+++.-
T Consensus 274 ~~~~~~~~ 281 (289)
T 3e48_A 274 QSFLQENI 281 (289)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 99887654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=219.83 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=167.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhc--cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEI--EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~--g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
|++|+|||||||||||++++++|+++ | ++|+++.|++++...+ ...+.++.+|++|++++.++++ ++|
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g---~~V~~~~r~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~---~~d 71 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDK---FVAKGLVRSAQGKEKI----GGEADVFIGDITDADSINPAFQ---GID 71 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTT---CEEEEEESCHHHHHHT----TCCTTEEECCTTSHHHHHHHHT---TCS
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCC---cEEEEEEcCCCchhhc----CCCeeEEEecCCCHHHHHHHHc---CCC
Confidence 46889999999999999999999999 7 8999999985443322 4567788999999988888876 899
Q ss_pred EEEEcccccCcc-------------ccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 79 VVVNCAALSVPR-------------VCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 79 ~vih~a~~~~~~-------------~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+|||+|+..... ...+.++..+++|+.++. ++++++++.++++||++||..++... .+.
T Consensus 72 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~iv~~SS~~~~~~~-------~~~ 143 (253)
T 1xq6_A 72 ALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQK-NQIDAAKVAGVKHIVVVGSMGGTNPD-------HPL 143 (253)
T ss_dssp EEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHH-HHHHHHHHHTCSEEEEEEETTTTCTT-------CGG
T ss_pred EEEEeccccccccccccccccccchhhccccccceeeeHHHHH-HHHHHHHHcCCCEEEEEcCccCCCCC-------Ccc
Confidence 999999975321 111222356799999996 99999999999999999998875321 111
Q ss_pred CC--CChhHHHHHHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHH
Q 022280 146 AP--VNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223 (300)
Q Consensus 146 ~p--~~~Y~~sK~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 223 (300)
.+ ...|+.+|..+|.+++..+.+++++||+.+||+..... . .. .+....+.+ ...++++++|+|+
T Consensus 144 ~~~~~~~y~~sK~~~e~~~~~~~i~~~~vrpg~v~~~~~~~~--~-~~---------~~~~~~~~~-~~~~~~~~~Dva~ 210 (253)
T 1xq6_A 144 NKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVR--E-LL---------VGKDDELLQ-TDTKTVPRADVAE 210 (253)
T ss_dssp GGGGGCCHHHHHHHHHHHHHTSSSCEEEEEECEEECSCSSSS--C-EE---------EESTTGGGG-SSCCEEEHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhCCCceEEEecceeecCCcchh--h-hh---------ccCCcCCcC-CCCcEEcHHHHHH
Confidence 11 23577899999999998888999999999999864210 0 00 000001111 2357999999999
Q ss_pred HHHHHHhccccccccccceeeecCCC---ccCHHHHHH
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPD---RVSRVQMAE 258 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~---~~s~~e~~~ 258 (300)
+++.+++++...++ +||+++++ .+|+.|+++
T Consensus 211 ~~~~~~~~~~~~g~----~~~i~~~~~~~~~s~~e~~~ 244 (253)
T 1xq6_A 211 VCIQALLFEEAKNK----AFDLGSKPEGTSTPTKDFKA 244 (253)
T ss_dssp HHHHHTTCGGGTTE----EEEEEECCTTTSCCCCCHHH
T ss_pred HHHHHHcCccccCC----EEEecCCCcCCCCCHHHHHH
Confidence 99999988654344 99999864 589999886
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=210.03 Aligned_cols=204 Identities=11% Similarity=0.102 Sum_probs=157.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++|+||||||||+||++++++|+++| ++|++++|+++....+ ...++.++.+|++|++++.++++ ++|+|
T Consensus 1 M~~~~ilVtGatG~iG~~l~~~l~~~g---~~V~~~~r~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~---~~d~v 71 (206)
T 1hdo_A 1 MAVKKIAIFGATGQTGLTTLAQAVQAG---YEVTVLVRDSSRLPSE---GPRPAHVVVGDVLQAADVDKTVA---GQDAV 71 (206)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCGGGSCSS---SCCCSEEEESCTTSHHHHHHHHT---TCSEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCC---CeEEEEEeChhhcccc---cCCceEEEEecCCCHHHHHHHHc---CCCEE
Confidence 666899999999999999999999999 8999999986543321 13567789999999988888876 89999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
||+|+..... ++ .++|+.++. ++++++++.++++||++||..+|+..... +.+...|+.+|..+|.
T Consensus 72 i~~a~~~~~~----~~---~~~n~~~~~-~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------~~~~~~y~~~K~~~e~ 137 (206)
T 1hdo_A 72 IVLLGTRNDL----SP---TTVMSEGAR-NIVAAMKAHGVDKVVACTSAFLLWDPTKV------PPRLQAVTDDHIRMHK 137 (206)
T ss_dssp EECCCCTTCC----SC---CCHHHHHHH-HHHHHHHHHTCCEEEEECCGGGTSCTTCS------CGGGHHHHHHHHHHHH
T ss_pred EECccCCCCC----Cc---cchHHHHHH-HHHHHHHHhCCCeEEEEeeeeeccCcccc------cccchhHHHHHHHHHH
Confidence 9999965431 11 347888885 99999999999999999999998765421 1146789999999999
Q ss_pred HHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcc-cCceeHHHHHHHHHHHHhccccccccc
Q 022280 161 FIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC-RCPVYVRDVVKIILALTNRWLSEDKQM 239 (300)
Q Consensus 161 ~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a~~~~~~~~~~~~~~~~~ 239 (300)
++++.+.+++++||+.+ +++.... .+ ....+... .++++++|+|++++.+++++...++
T Consensus 138 ~~~~~~i~~~~lrp~~~-~~~~~~~---~~--------------~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~-- 197 (206)
T 1hdo_A 138 VLRESGLKYVAVMPPHI-GDQPLTG---AY--------------TVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGH-- 197 (206)
T ss_dssp HHHHTCSEEEEECCSEE-ECCCCCS---CC--------------EEESSSCSSCSEEEHHHHHHHHHHTTSCSTTTTC--
T ss_pred HHHhCCCCEEEEeCCcc-cCCCCCc---ce--------------EecccCCCCCCccCHHHHHHHHHHHhcCcccccc--
Confidence 99988889999999997 4432211 00 00011111 5899999999999999988654444
Q ss_pred cceeeecCCC
Q 022280 240 QLLLNVGGPD 249 (300)
Q Consensus 240 ~~i~ni~~~~ 249 (300)
+||+++++
T Consensus 198 --~~~i~~g~ 205 (206)
T 1hdo_A 198 --STYPSHQY 205 (206)
T ss_dssp --EEEEECCC
T ss_pred --ceeeeccc
Confidence 99999874
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-32 Score=220.27 Aligned_cols=207 Identities=16% Similarity=0.091 Sum_probs=161.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc--eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY--DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
++|+||||||||+||++++++|+++| + +|++++|+++. ...++.++.+|++|++++.+.+ +|+
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g---~~~~V~~~~r~~~~-------~~~~~~~~~~D~~~~~~~~~~~-----~d~ 68 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEP---TLAKVIAPARKALA-------EHPRLDNPVGPLAELLPQLDGS-----IDT 68 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCT---TCCEEECCBSSCCC-------CCTTEECCBSCHHHHGGGCCSC-----CSE
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCC---CCCeEEEEeCCCcc-------cCCCceEEeccccCHHHHHHhh-----hcE
Confidence 45799999999999999999999999 6 99999998654 1245667889998876654432 999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAE 159 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e 159 (300)
|||+|+.... ....++..+++|+.++. ++++++++.++++||++||..+|+. |.+.|+.+|..+|
T Consensus 69 vi~~a~~~~~--~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~v~~Ss~~~~~~------------~~~~y~~sK~~~e 133 (215)
T 2a35_A 69 AFCCLGTTIK--EAGSEEAFRAVDFDLPL-AVGKRALEMGARHYLVVSALGADAK------------SSIFYNRVKGELE 133 (215)
T ss_dssp EEECCCCCHH--HHSSHHHHHHHHTHHHH-HHHHHHHHTTCCEEEEECCTTCCTT------------CSSHHHHHHHHHH
T ss_pred EEECeeeccc--cCCCHHHHHHhhHHHHH-HHHHHHHHcCCCEEEEECCcccCCC------------CccHHHHHHHHHH
Confidence 9999996532 23467888999999996 9999999999999999999999864 3568999999999
Q ss_pred HHHHHHcCC-ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccccccc
Q 022280 160 KFIYEKCSN-FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQ 238 (300)
Q Consensus 160 ~~~~~~~~~-~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~ 238 (300)
++++..+.+ ++++||+.+||+.... .+ ... +. ..... .+.+.++++|++|+|++++.+++++.
T Consensus 134 ~~~~~~~~~~~~~vrp~~v~g~~~~~----~~----~~~-~~-~~~~~-~~~~~~~~i~~~Dva~~~~~~~~~~~----- 197 (215)
T 2a35_A 134 QALQEQGWPQLTIARPSLLFGPREEF----RL----AEI-LA-APIAR-ILPGKYHGIEACDLARALWRLALEEG----- 197 (215)
T ss_dssp HHHTTSCCSEEEEEECCSEESTTSCE----EG----GGG-TT-CCCC-----CHHHHHHHHHHHHHHHHHHTCCC-----
T ss_pred HHHHHcCCCeEEEEeCceeeCCCCcc----hH----HHH-HH-Hhhhh-ccCCCcCcEeHHHHHHHHHHHHhcCC-----
Confidence 999998888 9999999999997531 11 111 10 11111 12336789999999999999998854
Q ss_pred ccceeeecCCCccCHHH
Q 022280 239 MQLLLNVGGPDRVSRVQ 255 (300)
Q Consensus 239 ~~~i~ni~~~~~~s~~e 255 (300)
.++||+++++.+++.+
T Consensus 198 -~~~~~i~~~~~~~~~~ 213 (215)
T 2a35_A 198 -KGVRFVESDELRKLGK 213 (215)
T ss_dssp -SEEEEEEHHHHHHHHH
T ss_pred -CCceEEcHHHHHHhhc
Confidence 2389999887666543
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-30 Score=212.31 Aligned_cols=208 Identities=15% Similarity=0.128 Sum_probs=158.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc--eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY--DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
++|+||||||||+||++++++|+++| + +|++++|+++...... ...+.++.+|++|++++.++++ ++|+
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G---~~~~V~~~~r~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~---~~d~ 87 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQG---LFSKVTLIGRRKLTFDEEA---YKNVNQEVVDFEKLDDYASAFQ---GHDV 87 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHT---CCSEEEEEESSCCCCCSGG---GGGCEEEECCGGGGGGGGGGGS---SCSE
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCC---CCCEEEEEEcCCCCccccc---cCCceEEecCcCCHHHHHHHhc---CCCE
Confidence 46899999999999999999999999 7 9999999876543322 1356778999999988877765 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAE 159 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e 159 (300)
||||||..... ..++..+++|+.++. ++++++++.++++||++||..+|+. +...|+.+|..+|
T Consensus 88 vi~~ag~~~~~---~~~~~~~~~n~~~~~-~~~~~~~~~~~~~iv~~SS~~~~~~------------~~~~Y~~sK~~~e 151 (242)
T 2bka_A 88 GFCCLGTTRGK---AGAEGFVRVDRDYVL-KSAELAKAGGCKHFNLLSSKGADKS------------SNFLYLQVKGEVE 151 (242)
T ss_dssp EEECCCCCHHH---HHHHHHHHHHTHHHH-HHHHHHHHTTCCEEEEECCTTCCTT------------CSSHHHHHHHHHH
T ss_pred EEECCCccccc---CCcccceeeeHHHHH-HHHHHHHHCCCCEEEEEccCcCCCC------------CcchHHHHHHHHH
Confidence 99999965322 235678899999996 9999999989899999999998864 2568999999999
Q ss_pred HHHHHHcCC-ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcccccccc
Q 022280 160 KFIYEKCSN-FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQ 238 (300)
Q Consensus 160 ~~~~~~~~~-~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~ 238 (300)
.+++.++.+ ++++||+.++|+.... . ....+........+ ..+ ...++++++|+|++++++++++...+
T Consensus 152 ~~~~~~~~~~~~~vrpg~v~~~~~~~----~-~~~~~~~~~~~~~~-~~~--~~~~~~~~~dva~~~~~~~~~~~~~~-- 221 (242)
T 2bka_A 152 AKVEELKFDRYSVFRPGVLLCDRQES----R-PGEWLVRKFFGSLP-DSW--ASGHSVPVVTVVRAMLNNVVRPRDKQ-- 221 (242)
T ss_dssp HHHHTTCCSEEEEEECCEEECTTGGG----S-HHHHHHHHHHCSCC-TTG--GGGTEEEHHHHHHHHHHHHTSCCCSS--
T ss_pred HHHHhcCCCCeEEEcCceecCCCCCC----c-HHHHHHHHhhcccC-ccc--cCCcccCHHHHHHHHHHHHhCccccC--
Confidence 999999985 9999999999986421 1 11222222212111 111 13469999999999999998865433
Q ss_pred ccceeeecC
Q 022280 239 MQLLLNVGG 247 (300)
Q Consensus 239 ~~~i~ni~~ 247 (300)
.+++.+
T Consensus 222 ---~~~~~~ 227 (242)
T 2bka_A 222 ---MELLEN 227 (242)
T ss_dssp ---EEEEEH
T ss_pred ---eeEeeH
Confidence 555544
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=212.32 Aligned_cols=256 Identities=13% Similarity=0.035 Sum_probs=183.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh--hhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ--LLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+|+||||||||+||++++++|+++|. ++|+++.|+++... .+. ..++.++++|++|++++..+++ ++|+|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~~V~~~~R~~~~~~~~~l~---~~~~~~~~~D~~d~~~l~~~~~---~~d~v 76 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGT--FKVRVVTRNPRKKAAKELR---LQGAEVVQGDQDDQVIMELALN---GAYAT 76 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCS--SEEEEEESCTTSHHHHHHH---HTTCEEEECCTTCHHHHHHHHT---TCSEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCC--ceEEEEEcCCCCHHHHHHH---HCCCEEEEecCCCHHHHHHHHh---cCCEE
Confidence 57999999999999999999999873 68999999876532 121 2357778999999998888877 89999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
||+++..... ..+.|+.++. +++++|++.++++||++||..+|+...+ .+...|+.+|..+|+
T Consensus 77 i~~a~~~~~~--------~~~~~~~~~~-~~~~aa~~~gv~~iv~~S~~~~~~~~~~--------~~~~~y~~sK~~~e~ 139 (299)
T 2wm3_A 77 FIVTNYWESC--------SQEQEVKQGK-LLADLARRLGLHYVVYSGLENIKKLTAG--------RLAAAHFDGKGEVEE 139 (299)
T ss_dssp EECCCHHHHT--------CHHHHHHHHH-HHHHHHHHHTCSEEEECCCCCHHHHTTT--------SCCCHHHHHHHHHHH
T ss_pred EEeCCCCccc--------cchHHHHHHH-HHHHHHHHcCCCEEEEEcCccccccCCC--------cccCchhhHHHHHHH
Confidence 9999853210 1334566664 9999999999999999888887764321 235789999999999
Q ss_pred HHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCc--eee-ccCcccCceeHHHHHHHHHHHHhccc-ccc
Q 022280 161 FIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK--VEF-FHDECRCPVYVRDVVKIILALTNRWL-SED 236 (300)
Q Consensus 161 ~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~i~v~D~a~~~~~~~~~~~-~~~ 236 (300)
++++.+.+++++||+.+||+......+ .....++. +.. .++..++|+|++|+|++++.+++++. ..+
T Consensus 140 ~~~~~gi~~~ilrp~~~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~g 210 (299)
T 2wm3_A 140 YFRDIGVPMTSVRLPCYFENLLSHFLP---------QKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVG 210 (299)
T ss_dssp HHHHHTCCEEEEECCEEGGGGGTTTCC---------EECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHHHTT
T ss_pred HHHHCCCCEEEEeecHHhhhchhhcCC---------cccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhhhCC
Confidence 999999999999999999974321011 00112221 222 25567899999999999999998742 223
Q ss_pred ccccceeeecCCCccCHHHHHHhh-----cc-------------CCCCC-------------ccccChHHHHHhcCCCcC
Q 022280 237 KQMQLLLNVGGPDRVSRVQMAEVD-----RG-------------VQSPA-------------DISMDITKLVQTLNIDPV 285 (300)
Q Consensus 237 ~~~~~i~ni~~~~~~s~~e~~~~~-----~~-------------~~~~~-------------~~~~~~~k~~~~lg~~p~ 285 (300)
+ +||+++ +.+|+.|+++.. .. ...+. ... ......+.+|.+|+
T Consensus 211 ~----~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~ 284 (299)
T 2wm3_A 211 Q----NIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKLGFPGARDLANMFRFYALRPD-RDIELTLRLNPKAL 284 (299)
T ss_dssp C----EEECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHHHHTTCSTTHHHHHHHHHHHTTCCC-CCHHHHHHHCTTCC
T ss_pred e----EEEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHHHHhcCCCcHHHHHHHHHHHHhcCC-CCHHHHHHhCCCCC
Confidence 3 899986 689999998800 00 00000 011 12234466888889
Q ss_pred CHHHHHHHHHhhh
Q 022280 286 TYKDGVKLTLAAE 298 (300)
Q Consensus 286 ~~~~~l~~~~~~~ 298 (300)
++++.+++....|
T Consensus 285 ~~~~~~~~~~~~~ 297 (299)
T 2wm3_A 285 TLDQWLEQHKGDF 297 (299)
T ss_dssp CHHHHHHHHGGGC
T ss_pred CHHHHHHhChhhc
Confidence 9999998876554
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=212.44 Aligned_cols=223 Identities=18% Similarity=0.207 Sum_probs=160.3
Q ss_pred CC-CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-----hhhhhhcCCCceeEEEeecCCchhHHHHHHhc
Q 022280 1 MS-KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-----PQLLLDALPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 1 ~~-~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
|+ +|+|||||||||||++++++|+++| ++|+++.|++.. ...+......++.++++|++|++++..+++
T Consensus 1 M~~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~-- 75 (313)
T 1qyd_A 1 MDKKSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK-- 75 (313)
T ss_dssp -CCCCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhCC---CcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHh--
Confidence 54 6899999999999999999999999 899999998542 111111113567889999999988888877
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccccccCCCCCCCCCCCCCC-CChhH
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGVKSFYKEEDEIAP-VNVYG 152 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p-~~~Y~ 152 (300)
++|+|||+++.... ..|+.++. +++++|++.+ +++||+ | +||...... +.+..| ...|
T Consensus 76 -~~d~vi~~a~~~~~-----------~~~~~~~~-~l~~aa~~~g~v~~~v~-S---~~g~~~~~~--~~~~~p~~~~y- 135 (313)
T 1qyd_A 76 -QVDVVISALAGGVL-----------SHHILEQL-KLVEAIKEAGNIKRFLP-S---EFGMDPDIM--EHALQPGSITF- 135 (313)
T ss_dssp -TCSEEEECCCCSSS-----------STTTTTHH-HHHHHHHHSCCCSEEEC-S---CCSSCTTSC--CCCCSSTTHHH-
T ss_pred -CCCEEEECCccccc-----------hhhHHHHH-HHHHHHHhcCCCceEEe-c---CCcCCcccc--ccCCCCCcchH-
Confidence 89999999986532 13677775 9999999998 999985 3 455432211 223334 4568
Q ss_pred HHHHHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHh
Q 022280 153 KSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 153 ~sK~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~ 230 (300)
.+|..+|+++++.+.+++++||+.++|+......... . .....++.+.+++ +..++|+|++|+|++++.+++
T Consensus 136 ~sK~~~e~~~~~~g~~~~ilrp~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~ 209 (313)
T 1qyd_A 136 IDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLD-G-----HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSID 209 (313)
T ss_dssp HHHHHHHHHHHHTTCCBCEEECCEEHHHHTTTSSCTT-C-----CSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCeEEEEeceecccccccccccc-c-----cccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHh
Confidence 9999999999998899999999998875321100000 0 0001233444444 457899999999999999998
Q ss_pred ccccccccccceeeecCC-CccCHHHHHH
Q 022280 231 RWLSEDKQMQLLLNVGGP-DRVSRVQMAE 258 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~-~~~s~~e~~~ 258 (300)
++...++ +|++.++ +.+|+.|+++
T Consensus 210 ~~~~~~~----~~~~~g~~~~~s~~e~~~ 234 (313)
T 1qyd_A 210 DPQTLNK----TMYIRPPMNILSQKEVIQ 234 (313)
T ss_dssp CGGGSSS----EEECCCGGGEEEHHHHHH
T ss_pred CcccCCc----eEEEeCCCCccCHHHHHH
Confidence 8644333 7777664 7899999988
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=209.38 Aligned_cols=235 Identities=17% Similarity=0.139 Sum_probs=167.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||++++++|+++| ++|++++|+.+....+....+..+.++.+|++|++++..+++ .++++
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 80 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAG---DTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRV 80 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999999999 899999999877777777777788889999999998766554 45789
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccch---HHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSL---VNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~---~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
|+||||||..... .+.+.++..+++|+.|++ ..+++.+++.+.++||++||...+.+.. +.+.
T Consensus 81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------~~~~ 150 (281)
T 3m1a_A 81 DVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFA----------GFSA 150 (281)
T ss_dssp SEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT----------TCHH
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCCC----------CchH
Confidence 9999999976432 233456678999999964 1455555667778999999988775543 3779
Q ss_pred hHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCC---CCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 151 YGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPV---PKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
|+.||.++|.+.+.++. ++.++||+.+.++...... ..... .+..... .... ...+....++.+++|
T Consensus 151 Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~~~~~~~~~d 227 (281)
T 3m1a_A 151 YSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENP-AYAEKVG-PTRQ-LVQGSDGSQPGDPAK 227 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCT-TTHHHHH-HHHH-HHHC-----CBCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcch-hhHHHhH-HHHH-HHhhccCCCCCCHHH
Confidence 99999999998876543 5688999999876422110 01111 1111111 0000 011224567889999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCccCHHHHH
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMA 257 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~ 257 (300)
+|++++++++.+..+. .||++++....+.+..
T Consensus 228 va~a~~~~~~~~~~~~-----~~~l~s~~~~~i~g~~ 259 (281)
T 3m1a_A 228 AAAAIRLALDTEKTPL-----RLALGGDAVDFLTGHL 259 (281)
T ss_dssp HHHHHHHHHHSSSCCS-----EEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCe-----EEecCchHHHHHHHHH
Confidence 9999999999865443 7999887655555444
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=205.80 Aligned_cols=235 Identities=13% Similarity=0.145 Sum_probs=171.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC--CceeEEEeecCCchhHHHHHH----hc
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
|++|+||||||+|+||++++++|+++| ++|++++|+.+....+.+.+. ..+.++.+|++|+++++.+++ .+
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYG---AKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH 90 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356899999999999999999999999 899999988654444433332 267889999999998776665 35
Q ss_pred CCCCEEEEcccccCcc------ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR------VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
+++|+||||||..... ...+.++..+++|+.+++ ++++++.. .+.++||++||..+|.+..
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------- 161 (278)
T 2bgk_A 91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF-LVAKHAARVMIPAKKGSIVFTASISSFTAGE-------- 161 (278)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHGGGTCEEEEEECCGGGTCCCT--------
T ss_pred CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHhhcCCCeEEEEeeccccCCCC--------
Confidence 7899999999975321 122345678999999996 77777665 4667999999999887643
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
.+...|+.||.+.+.+++.++ .++.++||+.++++........ ...+....... .+...+++++
T Consensus 162 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~ 232 (278)
T 2bgk_A 162 -GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGV--DSSRVEELAHQ------AANLKGTLLR 232 (278)
T ss_dssp -TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSC--CHHHHHHHHHH------TCSSCSCCCC
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhccc--chhHHHHhhhc------ccccccccCC
Confidence 136689999999999888764 3678999999999864321111 11222222111 0112356899
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
++|+|+++++++...... ..+++|++.+|..+++.|+++
T Consensus 233 ~~dva~~~~~l~~~~~~~--~~G~~~~v~gg~~~~~~e~~~ 271 (278)
T 2bgk_A 233 AEDVADAVAYLAGDESKY--VSGLNLVIDGGYTRTNPAFPT 271 (278)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGCCTHHHH
T ss_pred HHHHHHHHHHHcCccccc--CCCCEEEECCcccccCCccch
Confidence 999999999999764221 113389999999999999886
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=206.67 Aligned_cols=225 Identities=17% Similarity=0.163 Sum_probs=165.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|.+|+||||||+|+||++++++|+++| ++|++++|+++....+.+. .+..+.++.+|++|+++++.+++ .
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 85 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999999 8999999986554433322 24567788999999998777665 4
Q ss_pred cCCCCEEEEcccccCcc---ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR---VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~---~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++++|+||||||..... .+.+.++..+++|+.+++ ++++++. +.+.++||++||...+.+..
T Consensus 86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 154 (255)
T 1fmc_A 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFF-HLSQLVAPEMEKNGGGVILTITSMAAENKNI---------- 154 (255)
T ss_dssp HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTCCCT----------
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEEcchhhcCCCC----------
Confidence 56899999999976532 223345778999999996 7777764 45678999999998876543
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
+...|+.||.+.|.+++.++ .++.++||+.++++..... ....+..... .+. ....+++++
T Consensus 155 ~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~-~~~-------~~~~~~~~~ 222 (255)
T 1fmc_A 155 NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV----ITPEIEQKML-QHT-------PIRRLGQPQ 222 (255)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT----CCHHHHHHHH-HTC-------SSCSCBCHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhc----cChHHHHHHH-hcC-------CcccCCCHH
Confidence 36789999999999887764 3568899999998742211 1122222222 221 234688999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccCH
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSR 253 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~ 253 (300)
|+|+++++++...... ..+++||+++|..+|+
T Consensus 223 dva~~~~~l~~~~~~~--~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 223 DIANAALFLCSPAASW--VSGQILTVSGGGVQEL 254 (255)
T ss_dssp HHHHHHHHHHSGGGTT--CCSCEEEESTTSCCCC
T ss_pred HHHHHHHHHhCCcccc--CCCcEEEECCceeccC
Confidence 9999999999764221 1133899999987764
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=205.11 Aligned_cols=223 Identities=17% Similarity=0.109 Sum_probs=163.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+++....+.+.. ...+++.+|++|.++++++++.++++|+|
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASG---AKVVAVTRTNSDLVSLAKEC-PGIEPVCVDLGDWDATEKALGGIGPVDLL 80 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHS-TTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHhc-cCCCcEEecCCCHHHHHHHHHHcCCCCEE
Confidence 356899999999999999999999999 89999999865555444433 34566799999999999998877789999
Q ss_pred EEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 81 VNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 81 ih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
||+||...... ..+.++..+++|+.+++ ++++++.+ .+ .++||++||..++.+.+. ...|
T Consensus 81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------~~~Y 149 (244)
T 1cyd_A 81 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVF-QVSQMVARDMINRGVPGSIVNVSSMVAHVTFPN----------LITY 149 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTT----------BHHH
T ss_pred EECCcccCCCCcccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhCCCCeEEEEEcchhhcCCCCC----------cchh
Confidence 99999764321 23345678999999996 77777654 35 579999999988876433 6789
Q ss_pred HHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 152 GKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
+.||.+.|.+++.++ .++.++||+.++++....... ...++.... . +...+++++++|+|++
T Consensus 150 ~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~---~~~~~~~~~-~-------~~~~~~~~~~~dva~~ 218 (244)
T 1cyd_A 150 SSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSA---DPEFARKLK-E-------RHPLRKFAEVEDVVNS 218 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTC---CHHHHHHHH-H-------HSTTSSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcccccccc---CHHHHHHHH-h-------cCCccCCCCHHHHHHH
Confidence 999999999988654 356789999999874211000 112222222 1 1234689999999999
Q ss_pred HHHHHhccccccccccceeeecCCCcc
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
++++++.+... ..++.+++.+|...
T Consensus 219 ~~~l~~~~~~~--~~G~~~~v~gG~~~ 243 (244)
T 1cyd_A 219 ILFLLSDRSAS--TSGGGILVDAGYLA 243 (244)
T ss_dssp HHHHHSGGGTT--CCSSEEEESTTGGG
T ss_pred HHHHhCchhhc--ccCCEEEECCCccC
Confidence 99999864321 11338888887543
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=209.54 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=161.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~vi 81 (300)
||+||||||+||||++++++|+++| ++|++++|+++.... . +++|++|.++++.+++.+ +++|+||
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~---------~-~~~D~~~~~~~~~~~~~~~~~~d~vi 67 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAG---HTVIGIDRGQADIEA---------D-LSTPGGRETAVAAVLDRCGGVLDGLV 67 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSSSEEC---------C-TTSHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCC---CEEEEEeCChhHccc---------c-ccCCcccHHHHHHHHHHcCCCccEEE
Confidence 4689999999999999999999999 899999998654321 1 578999998888888776 6899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCC--CC-------CCCC-----
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKS--FY-------KEED----- 143 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~--~~-------~E~~----- 143 (300)
||||.... ...++..+++|+.++. ++++++.+ .+.++||++||..+|+.... +. +|+.
T Consensus 68 ~~Ag~~~~---~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (255)
T 2dkn_A 68 CCAGVGVT---AANSGLVVAVNYFGVS-ALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELA 143 (255)
T ss_dssp ECCCCCTT---SSCHHHHHHHHTHHHH-HHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHH
T ss_pred ECCCCCCc---chhHHHHHHHHhHHHH-HHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhc
Confidence 99997642 2357889999999996 88887665 35679999999999876421 11 1111
Q ss_pred --CCCCCChhHHHHHHHHHHHHHH-------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 144 --EIAPVNVYGKSKVAAEKFIYEK-------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 144 --~~~p~~~Y~~sK~~~e~~~~~~-------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...+.+.|+.||.++|.+++.+ +.+++++||+.++|+......+... ...... .+.+ ..++
T Consensus 144 ~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~~~~----~~~~~~-----~~~~-~~~~ 213 (255)
T 2dkn_A 144 EQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKADPR----YGESTR-----RFVA-PLGR 213 (255)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHHCTT----THHHHH-----SCCC-TTSS
T ss_pred cccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhcccchh----hHHHHH-----HHHH-HhcC
Confidence 1135678999999999988765 3477899999999874210000000 000010 0012 4568
Q ss_pred ceeHHHHHHHHHHHHhccc--cccccccceeeecCCCccCHHH
Q 022280 215 PVYVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPDRVSRVQ 255 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~~~s~~e 255 (300)
+++++|+|++++++++.+. ..|+ +||+++|..++++|
T Consensus 214 ~~~~~dva~~~~~l~~~~~~~~~G~----~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 214 GSEPREVAEAIAFLLGPQASFIHGS----VLFVDGGMDALMRA 252 (255)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSC----EEEESTTHHHHHCT
T ss_pred CCCHHHHHHHHHHHhCCCcccceee----EEEecCCeEeeeec
Confidence 9999999999999998752 2333 89999998877765
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=212.10 Aligned_cols=214 Identities=16% Similarity=0.073 Sum_probs=158.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch--hhhhhcCCCceeEEEee-cCCchhHHHHHHhcCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP--QLLLDALPHSFVFFDVD-LKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~d~ 79 (300)
+|+|||||||||||+++++.|+++| ++|++++|+++.. ..+.. ..++.++.+| ++|++++..+++ ++|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~l~~--~~~v~~v~~D~l~d~~~l~~~~~---~~d~ 76 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVG---HHVRAQVHSLKGLIAEELQA--IPNVTLFQGPLLNNVPLMDTLFE---GAHL 76 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCSCSHHHHHHHT--STTEEEEESCCTTCHHHHHHHHT---TCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCCChhhHHHHhh--cCCcEEEECCccCCHHHHHHHHh---cCCE
Confidence 5889999999999999999999999 8999999987654 22221 1357778999 999988888876 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccc--cccCCCCCCCCCCCCCCCChhHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQ--VYEGVKSFYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~--~~~~~~~~~~E~~~~~p~~~Y~~sK~ 156 (300)
|||+++... ...|..+ . +++++|++.+ +++|||+||.. .|+. .+...|+.+|.
T Consensus 77 Vi~~a~~~~-----------~~~~~~~-~-~l~~aa~~~g~v~~~V~~SS~~~~~~~~-----------~~~~~y~~sK~ 132 (352)
T 1xgk_A 77 AFINTTSQA-----------GDEIAIG-K-DLADAAKRAGTIQHYIYSSMPDHSLYGP-----------WPAVPMWAPKF 132 (352)
T ss_dssp EEECCCSTT-----------SCHHHHH-H-HHHHHHHHHSCCSEEEEEECCCGGGTSS-----------CCCCTTTHHHH
T ss_pred EEEcCCCCC-----------cHHHHHH-H-HHHHHHHHcCCccEEEEeCCccccccCC-----------CCCccHHHHHH
Confidence 999987431 1235544 3 9999999998 99999999975 3432 23467999999
Q ss_pred HHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCc-eeec--cCcccCceeH-HHHHHHHHHHHhcc
Q 022280 157 AAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK-VEFF--HDECRCPVYV-RDVVKIILALTNRW 232 (300)
Q Consensus 157 ~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~i~v-~D~a~~~~~~~~~~ 232 (300)
.+|+++++.+.+++++||+ +||++........+. ......+.. +.++ +++.++|+|+ +|+|++++.+++.+
T Consensus 133 ~~E~~~~~~gi~~~ivrpg-~~g~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~ 207 (352)
T 1xgk_A 133 TVENYVRQLGLPSTFVYAG-IYNNNFTSLPYPLFQ----MELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDG 207 (352)
T ss_dssp HHHHHHHTSSSCEEEEEEC-EEGGGCBSSSCSSCB----EEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEEecc-eecCCchhccccccc----ccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCC
Confidence 9999999988899999976 688865322111110 000112222 1223 4577899999 89999999999874
Q ss_pred cc--ccccccceeeecCCCccCHHHHHH
Q 022280 233 LS--EDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 233 ~~--~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
.. .++ +||+++ +.+|+.|+++
T Consensus 208 ~~~~~g~----~~~l~~-~~~s~~e~~~ 230 (352)
T 1xgk_A 208 PQKWNGH----RIALTF-ETLSPVQVCA 230 (352)
T ss_dssp HHHHTTC----EEEECS-EEECHHHHHH
T ss_pred chhhCCe----EEEEec-CCCCHHHHHH
Confidence 21 233 899996 6799999988
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-28 Score=200.61 Aligned_cols=222 Identities=18% Similarity=0.152 Sum_probs=162.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++||||||+|+||++++++|+++| ++|++++|++++...+.+... ...++.+|++|+++++++++.++++|+||
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~id~vi 81 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATG---ARVVAVSRTQADLDSLVRECP-GIEPVCVDLGDWEATERALGSVGPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHST-TCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHcC-CCCEEEEeCCCHHHHHHHHHHcCCCCEEE
Confidence 35799999999999999999999999 899999998665555544432 45667999999999999988777899999
Q ss_pred EcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCCCCCCChhH
Q 022280 82 NCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYG 152 (300)
Q Consensus 82 h~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~ 152 (300)
|+||...... ..+.++..+++|+.+++ ++++++.+ .+ .++||++||...+.+.+ +...|+
T Consensus 82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------~~~~Y~ 150 (244)
T 3d3w_A 82 NNAAVALLQPFLEVTKEAFDRSFEVNLRAVI-QVSQIVARGLIARGVPGAIVNVSSQCSQRAVT----------NHSVYC 150 (244)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT----------TBHHHH
T ss_pred ECCccCCCcchhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCCcEEEEeCchhhccCCC----------CCchHH
Confidence 9999764321 22345678999999996 77776654 35 57999999988776543 267899
Q ss_pred HHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHH
Q 022280 153 KSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKII 225 (300)
Q Consensus 153 ~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 225 (300)
.||.++|.+++.++ .++.++||+.++++......... .+..... .. .+.+++++++|+|+++
T Consensus 151 ~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~---~~~~~~~-~~-------~~~~~~~~~~dva~~~ 219 (244)
T 3d3w_A 151 STKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDP---HKAKTML-NR-------IPLGKFAEVEHVVNAI 219 (244)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCST---THHHHHH-HT-------CTTCSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccCh---HHHHHHH-hh-------CCCCCCcCHHHHHHHH
Confidence 99999999887654 35688999999987532100000 1111111 11 1345789999999999
Q ss_pred HHHHhccccccccccceeeecCCCcc
Q 022280 226 LALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
+++++..... ..+++|++++|...
T Consensus 220 ~~l~~~~~~~--~~G~~~~v~gG~~~ 243 (244)
T 3d3w_A 220 LFLLSDRSGM--TTGSTLPVEGGFWA 243 (244)
T ss_dssp HHHHSGGGTT--CCSCEEEESTTGGG
T ss_pred HHHcCccccC--CCCCEEEECCCccC
Confidence 9999764211 11338999987543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-28 Score=205.57 Aligned_cols=229 Identities=17% Similarity=0.145 Sum_probs=165.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~~ 77 (300)
.+|++|||||+|+||++++++|+++| ++|++.+|+.+......+.++..+.++++|++|+++++.++ ++++++
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 83 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREG---ATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGL 83 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 35789999999999999999999999 89999999877666666666667888999999999866555 456799
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
|+||||||...... +.+.++..+++|+.|++ ++++++.. .+ .++||++||...+.+.+. .
T Consensus 84 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~ 152 (259)
T 4e6p_A 84 DILVNNAALFDLAPIVEITRESYEKLFAINVAGTL-FTLQAAARQMIAQGRGGKIINMASQAGRRGEAL----------V 152 (259)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTT----------B
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCeEEEEECChhhccCCCC----------C
Confidence 99999999865332 33456778899999996 77777654 23 459999999887765433 6
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhc--CCceeecc--CcccCcee
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSK--GEKVEFFH--DECRCPVY 217 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~i~ 217 (300)
..|+.||.+.+.+.+.++. ++.+++|+.++++.... ........... .......+ .+.+++.+
T Consensus 153 ~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 226 (259)
T 4e6p_A 153 AIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDG------VDALFARYENRPRGEKKRLVGEAVPFGRMGT 226 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHH------HHHHHHHHHTCCTTHHHHHHHHHSTTSSCBC
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhh------hhhhhhhhccCChHHHHHHHhccCCCCCCcC
Confidence 7899999999999887653 56789999998874210 00111111100 01111111 25678999
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
++|+|+++++++...... ..+++|++++|..+|
T Consensus 227 ~~dva~~v~~L~s~~~~~--itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 227 AEDLTGMAIFLASAESDY--IVSQTYNVDGGNWMS 259 (259)
T ss_dssp THHHHHHHHHTTSGGGTT--CCSCEEEESTTSSCC
T ss_pred HHHHHHHHHHHhCCccCC--CCCCEEEECcChhcC
Confidence 999999999998753321 113399999987654
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=204.94 Aligned_cols=214 Identities=11% Similarity=0.184 Sum_probs=155.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-C-----chhhhhhcCCCceeEEEeecCCchhHHHHHHhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-P-----LPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
+||+|+||||||+||++++++|+++| ++|+++.|++ + ....+......++.++++|++|++++..+++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~--- 76 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFS---HPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLK--- 76 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTT---CCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT---
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCC---CcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHc---
Confidence 46789999999999999999999999 8999999986 2 1111111112457789999999988888877
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccccccCCCCCCCCCCCCCC-CChhHH
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGVKSFYKEEDEIAP-VNVYGK 153 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p-~~~Y~~ 153 (300)
++|+|||+|+... +.++. +++++|++.+ +++||+ | +||... +|..+..| .+.| .
T Consensus 77 ~~d~vi~~a~~~~---------------~~~~~-~l~~aa~~~g~v~~~v~-S---~~g~~~---~~~~~~~p~~~~y-~ 132 (321)
T 3c1o_A 77 QVDIVISALPFPM---------------ISSQI-HIINAIKAAGNIKRFLP-S---DFGCEE---DRIKPLPPFESVL-E 132 (321)
T ss_dssp TCSEEEECCCGGG---------------SGGGH-HHHHHHHHHCCCCEEEC-S---CCSSCG---GGCCCCHHHHHHH-H
T ss_pred CCCEEEECCCccc---------------hhhHH-HHHHHHHHhCCccEEec-c---ccccCc---cccccCCCcchHH-H
Confidence 8999999998531 44554 9999999998 999983 3 454321 23333333 4579 9
Q ss_pred HHHHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHH--HHhcCCceeecc--CcccCceeHHHHHHHHHHHH
Q 022280 154 SKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDS--VLSKGEKVEFFH--DECRCPVYVRDVVKIILALT 229 (300)
Q Consensus 154 sK~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~ 229 (300)
+|..+|+++++.+.+++++||+.+++... ..+... ....++.+..++ +..++|+|++|+|++++.++
T Consensus 133 sK~~~e~~~~~~~~~~~~lrp~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l 203 (321)
T 3c1o_A 133 KKRIIRRAIEAAALPYTYVSANCFGAYFV---------NYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVA 203 (321)
T ss_dssp HHHHHHHHHHHHTCCBEEEECCEEHHHHH---------HHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeceeccccc---------cccccccccccccCceEEecCCCcceeEeeHHHHHHHHHHHH
Confidence 99999999999999999999998886421 011100 001233445554 45789999999999999999
Q ss_pred hccccccccccceeeecC-CCccCHHHHHH
Q 022280 230 NRWLSEDKQMQLLLNVGG-PDRVSRVQMAE 258 (300)
Q Consensus 230 ~~~~~~~~~~~~i~ni~~-~~~~s~~e~~~ 258 (300)
..+...++ +|++.+ ++.+|+.|+++
T Consensus 204 ~~~~~~g~----~~~~~g~~~~~t~~e~~~ 229 (321)
T 3c1o_A 204 CDPRCCNR----IVIYRPPKNIISQNELIS 229 (321)
T ss_dssp HCGGGTTE----EEECCCGGGEEEHHHHHH
T ss_pred hCccccCe----EEEEeCCCCcccHHHHHH
Confidence 88644333 788875 57899999988
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=199.67 Aligned_cols=220 Identities=14% Similarity=0.206 Sum_probs=154.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+.+......+.++..+.++.+|++|.++++++++ .++++
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 82 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQEG---ATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHV 82 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 35799999999999999999999999 899999999877766666666678889999999998766554 56799
Q ss_pred CEEEEcccccCcc--------ccccChhhhhhcccccchHHHHHhhhhc----------cCCeEEEeeccccccCCCCCC
Q 022280 78 DVVVNCAALSVPR--------VCENDPDSAMSINVPSSLVNWLSSFTEN----------KENLLIHLSTDQVYEGVKSFY 139 (300)
Q Consensus 78 d~vih~a~~~~~~--------~~~~~~~~~~~~nv~~~~~~l~~~~~~~----------~~~~~v~~SS~~~~~~~~~~~ 139 (300)
|++|||||..... .+.+.++..+++|+.|++ .+++++... +.++||++||...+.+...
T Consensus 83 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~~-- 159 (257)
T 3tpc_A 83 HGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTF-NMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIG-- 159 (257)
T ss_dssp CEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTT--
T ss_pred CEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCCC--
Confidence 9999999986432 223456788999999996 777776642 4468999999888766543
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.||.+.+.+.+.++. ++.+++|+.|.++.... ...... ..+.. ....
T Consensus 160 --------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~-----~~~~~~-~~~~~-------~~p~ 218 (257)
T 3tpc_A 160 --------QAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAG-----MPQDVQ-DALAA-------SVPF 218 (257)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--------------------C-------CSSS
T ss_pred --------CcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhcc-----CCHHHH-HHHHh-------cCCC
Confidence 67899999999998876543 56789999998764311 011111 11101 1122
Q ss_pred -cCceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 213 -RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 213 -~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
..+.+++|+|++++++++.....|+ ++++.+|..++
T Consensus 219 ~~r~~~~~dva~~v~~l~s~~~itG~----~i~vdGG~~~~ 255 (257)
T 3tpc_A 219 PPRLGRAEEYAALVKHICENTMLNGE----VIRLDGALRMA 255 (257)
T ss_dssp SCSCBCHHHHHHHHHHHHHCTTCCSC----EEEESTTCCC-
T ss_pred CCCCCCHHHHHHHHHHHcccCCcCCc----EEEECCCccCC
Confidence 5688999999999999987544555 89999987654
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=203.85 Aligned_cols=212 Identities=12% Similarity=0.185 Sum_probs=154.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+++||||||||+||++++++|+++| ++|+++.|+++ ....+......++.++++|++|++++..+++ ++|+||
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~---~~d~vi 84 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLG---HPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK---KVDVVI 84 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTT---CCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHT---TCSEEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHCC---CcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHc---CCCEEE
Confidence 3589999999999999999999999 89999999875 2222211112457789999999998888877 899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccccccCCCCCCCCCCCCCC-CChhHHHHHHHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGVKSFYKEEDEIAP-VNVYGKSKVAAE 159 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p-~~~Y~~sK~~~e 159 (300)
|+++... +.++. +++++|++.+ +++||+ | +||.. .+|..+..| ...| .+|..+|
T Consensus 85 ~~a~~~~---------------~~~~~-~l~~aa~~~g~v~~~v~-S---~~g~~---~~~~~~~~p~~~~y-~sK~~~e 140 (318)
T 2r6j_A 85 SALAFPQ---------------ILDQF-KILEAIKVAGNIKRFLP-S---DFGVE---EDRINALPPFEALI-ERKRMIR 140 (318)
T ss_dssp ECCCGGG---------------STTHH-HHHHHHHHHCCCCEEEC-S---CCSSC---TTTCCCCHHHHHHH-HHHHHHH
T ss_pred ECCchhh---------------hHHHH-HHHHHHHhcCCCCEEEe-e---ccccC---cccccCCCCcchhH-HHHHHHH
Confidence 9998531 34454 9999999988 999984 3 35432 233333333 3468 9999999
Q ss_pred HHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHhccccccc
Q 022280 160 KFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNRWLSEDK 237 (300)
Q Consensus 160 ~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 237 (300)
+++++.+.+++++||+.+++.. ...+.... ...+.+.+++ +..++|+|++|++++++.+++++...++
T Consensus 141 ~~~~~~~~~~~~lr~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~ 210 (318)
T 2r6j_A 141 RAIEEANIPYTYVSANCFASYF---------INYLLRPY-DPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNR 210 (318)
T ss_dssp HHHHHTTCCBEEEECCEEHHHH---------HHHHHCTT-CCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTCGGGTTE
T ss_pred HHHHhcCCCeEEEEcceehhhh---------hhhhcccc-CCCCceEEecCCCceeeEeeHHHHHHHHHHHhcCccccCe
Confidence 9999988999999998877531 11111111 1334555555 3578999999999999999987543333
Q ss_pred cccceeeecC-CCccCHHHHHH
Q 022280 238 QMQLLLNVGG-PDRVSRVQMAE 258 (300)
Q Consensus 238 ~~~~i~ni~~-~~~~s~~e~~~ 258 (300)
+|++.+ ++.+|+.|+++
T Consensus 211 ----~~~~~g~~~~~s~~e~~~ 228 (318)
T 2r6j_A 211 ----VVIYRPSTNIITQLELIS 228 (318)
T ss_dssp ----EEECCCGGGEEEHHHHHH
T ss_pred ----EEEecCCCCccCHHHHHH
Confidence 777765 57899999988
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=204.99 Aligned_cols=232 Identities=13% Similarity=0.130 Sum_probs=165.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecCCchhHHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+.+......+.+ +..+.++.+|++|.++++.+++
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLG---AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999 89999999865544443332 4567889999999998776654
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh-----ccCCeEEEeeccccccCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE-----NKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
.++++|+||||||..... .+.+.++..+++|+.+++ ++++++.+ .+.++||++||...+.+..
T Consensus 101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~------- 172 (302)
T 1w6u_A 101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTA-FVTLEIGKQLIKAQKGAAFLSITTIYAETGSG------- 172 (302)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCEEEEEECCTHHHHCCT-------
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhcCCCEEEEEcccccccCCC-------
Confidence 357899999999975431 233456788999999996 77666643 3456999999988775543
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
+...|+.||.+.+.+++.++. ++.++||+.+++++.......... ...... ... ....++
T Consensus 173 ---~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~--~~~~~~-~~~-------p~~~~~ 239 (302)
T 1w6u_A 173 ---FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGT--FEKEMI-GRI-------PCGRLG 239 (302)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSH--HHHHHH-TTC-------TTSSCB
T ss_pred ---CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchh--hHHHHH-hcC-------CcCCCC
Confidence 267899999999998887643 478899999998742211111100 111111 111 234688
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
+++|+|+++++++...... ..+++|++++|..+++.++++
T Consensus 240 ~~~dva~~~~~l~~~~~~~--~~G~~~~v~gg~~~~~~~~~~ 279 (302)
T 1w6u_A 240 TVEELANLAAFLCSDYASW--INGAVIKFDGGEEVLISGEFN 279 (302)
T ss_dssp CHHHHHHHHHHHTSGGGTT--CCSCEEEESTTHHHHHHSTTG
T ss_pred CHHHHHHHHHHHcCCcccc--cCCCEEEECCCeeeccCCccc
Confidence 9999999999999764321 113389999998888888776
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=200.20 Aligned_cols=231 Identities=14% Similarity=0.166 Sum_probs=158.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC------CCceeEEEeecCCchhHHHHHH--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL------PHSFVFFDVDLKSGSGFDAVAL-- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~-- 72 (300)
|++|++|||||+|+||+++++.|+++| ++|++++|++++...+.+.+ +..+.++.+|++|+++++.+++
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREG---AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT 80 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHH
Confidence 356899999999999999999999999 89999999865554443322 2457778999999988766554
Q ss_pred --hcCCCCEEEEcccccCccc--------cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeecccc-ccCCCC
Q 022280 73 --KFGQPDVVVNCAALSVPRV--------CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQV-YEGVKS 137 (300)
Q Consensus 73 --~~~~~d~vih~a~~~~~~~--------~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~-~~~~~~ 137 (300)
.++++|+||||||...... +.+.++..+++|+.|++ ++++++.. .+ ++||++||... +.+.+.
T Consensus 81 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~ 158 (278)
T 1spx_A 81 LGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVI-ALTKKAVPHLSSTK-GEIVNISSIASGLHATPD 158 (278)
T ss_dssp HHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHT-CEEEEECCTTSSSSCCTT
T ss_pred HHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhhcC-CeEEEEecccccccCCCC
Confidence 4678999999999764321 33456778999999996 77777654 35 79999999877 654332
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCC-CC-Cc--hHHHHHHHHhcCCcee
Q 022280 138 FYKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPV-PK-SL--PIQWIDSVLSKGEKVE 206 (300)
Q Consensus 138 ~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~-~~-~~--~~~~~~~~~~~~~~~~ 206 (300)
...|+.||.+.+.+.+.++ .++.++||+.+.++...... +. .. ......... .
T Consensus 159 ----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~-~----- 222 (278)
T 1spx_A 159 ----------FPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMK-E----- 222 (278)
T ss_dssp ----------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHH-H-----
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHH-h-----
Confidence 6689999999999887653 46789999999887532110 00 00 000011111 0
Q ss_pred eccCcccCceeHHHHHHHHHHHHhccc---cccccccceeeecCCCccCHHHHHH
Q 022280 207 FFHDECRCPVYVRDVVKIILALTNRWL---SEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 207 ~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
......+.+++|+|+++++++..+. ..|+ +|++.+|..+++.++++
T Consensus 223 --~~p~~~~~~~~dvA~~v~~l~s~~~~~~~tG~----~~~vdgG~~~~~~~~~~ 271 (278)
T 1spx_A 223 --CVPAGVMGQPQDIAEVIAFLADRKTSSYIIGH----QLVVDGGSSLIMGLHCQ 271 (278)
T ss_dssp --HCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSC----EEEESTTGGGC------
T ss_pred --cCCCcCCCCHHHHHHHHHHHcCccccCcccCc----EEEECCCcccccCcccc
Confidence 0123468999999999999997643 2344 89999999999998875
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=196.38 Aligned_cols=219 Identities=14% Similarity=0.133 Sum_probs=165.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
.+|++|||||+|+||++++++|+++| ++|++.+|+.+......+.++..+.++.+|++|.++++++++ .++++
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 86 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAG---ARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRL 86 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 899999999888777766666778889999999998766554 56799
Q ss_pred CEEEEcccccCc------cccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVP------RVCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 78 d~vih~a~~~~~------~~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
|++|||||.... ..+.+.++..+++|+.|++ ++++++ ++.+.++||++||...+.+...
T Consensus 87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~---------- 155 (271)
T 3tzq_B 87 DIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTM-LMCKYAIPRLISAGGGAIVNISSATAHAAYDM---------- 155 (271)
T ss_dssp CEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCEEEEEECCGGGTSBCSS----------
T ss_pred CEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCEEEEECCHHHcCCCCC----------
Confidence 999999998632 1233456788999999996 877777 5566779999999888765443
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.||.+++.+.+.++. ++.+++|+.++++...... ...+..... .. .....+.+++|
T Consensus 156 ~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~----~~~~~~~~~-~~-------~~~~r~~~p~d 223 (271)
T 3tzq_B 156 STAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGL----PQPIVDIFA-TH-------HLAGRIGEPHE 223 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC-------CHHHHHHHH-TT-------STTSSCBCHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccC----CHHHHHHHH-hc-------CCCCCCcCHHH
Confidence 67999999999998886643 4678999999987542111 112222211 11 12346789999
Q ss_pred HHHHHHHHHhccccccccccceeeecCC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
+|+++++++...... ..++++++.+|
T Consensus 224 vA~~v~~L~s~~~~~--itG~~i~vdGG 249 (271)
T 3tzq_B 224 IAELVCFLASDRAAF--ITGQVIAADSG 249 (271)
T ss_dssp HHHHHHHHHSGGGTT--CCSCEEEESTT
T ss_pred HHHHHHHHhCcccCC--cCCCEEEECCC
Confidence 999999999764321 12338999888
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-27 Score=195.10 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=160.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++||||||+|+||+++++.|+++| ++|++++|+.+....+.+.+...+.++.+|+++.+++.+++++++++|+||
T Consensus 13 ~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li 89 (249)
T 3f9i_A 13 TGKTSLITGASSGIGSAIARLLHKLG---SKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILV 89 (249)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence 46899999999999999999999999 899999998777666666666778889999999999999998888899999
Q ss_pred EcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHH
Q 022280 82 NCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGK 153 (300)
Q Consensus 82 h~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~ 153 (300)
|+||..... ...+.++..+++|+.+++ ++++++. +.+.++||++||...+.+.+. ...|+.
T Consensus 90 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~~Y~~ 158 (249)
T 3f9i_A 90 CNAGITSDTLAIRMKDQDFDKVIDINLKANF-ILNREAIKKMIQKRYGRIINISSIVGIAGNPG----------QANYCA 158 (249)
T ss_dssp ECCC-------------CHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCCCC--CCSC----------SHHHHH
T ss_pred ECCCCCCCCccccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCcEEEEEccHHhccCCCC----------CchhHH
Confidence 999976532 344567889999999996 7766653 456679999999888766543 678999
Q ss_pred HHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHH
Q 022280 154 SKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIIL 226 (300)
Q Consensus 154 sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 226 (300)
||.+.+.+++.++. ++.+++|+.+.++.... .......... .+.+.+++.+++|+|++++
T Consensus 159 sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-----~~~~~~~~~~--------~~~~~~~~~~~~dva~~~~ 225 (249)
T 3f9i_A 159 SKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDK-----LNEKQREAIV--------QKIPLGTYGIPEDVAYAVA 225 (249)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC-----------CCHHHHHHHH--------HHCTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccc-----cCHHHHHHHH--------hcCCCCCCcCHHHHHHHHH
Confidence 99999998876643 45779999887664221 1112221111 1123457899999999999
Q ss_pred HHHhccccccccccceeeecCCCc
Q 022280 227 ALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 227 ~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++++..... ..+++|++++|..
T Consensus 226 ~l~s~~~~~--~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 226 FLASNNASY--ITGQTLHVNGGML 247 (249)
T ss_dssp HHHSGGGTT--CCSCEEEESTTSS
T ss_pred HHcCCccCC--ccCcEEEECCCEe
Confidence 999864321 1134899998864
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=199.11 Aligned_cols=229 Identities=13% Similarity=0.156 Sum_probs=157.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-Cchhhhhhc----CCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLDA----LPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+. +....+.+. .+..+.++.+|++|+++++.+++
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 99 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAG---ANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVA 99 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999999 8999999953 333333222 14567788999999998766554
Q ss_pred -hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
.++++|+||||||...... +.+.++..+++|+.|++ ++++++ ++.+.++||++||...+.+...
T Consensus 100 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 172 (281)
T 3v2h_A 100 DRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSF-HTIRGAIPPMKKKGWGRIINIASAHGLVASPF------ 172 (281)
T ss_dssp HHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT------
T ss_pred HHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCCEEEEECCcccccCCCC------
Confidence 4679999999999865432 33456788999999996 777765 4556679999999887765443
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC---ceeeccCccc
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE---KVEFFHDECR 213 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 213 (300)
...|+.||.+++.+.+.++. ++..++|+.+.++......+... ......... .....+.+.+
T Consensus 173 ----~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~ 244 (281)
T 3v2h_A 173 ----KSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQA----RTRGITEEQVINEVMLKGQPTK 244 (281)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC--------------------------------CCTTC
T ss_pred ----chHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhh----hhcCCCHHHHHHHHHHhcCCCC
Confidence 67899999999998876643 45779999998775321111000 000000000 0011123567
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++++++|+|+++++++...... ..++++++++|.
T Consensus 245 r~~~~edvA~~v~~L~s~~a~~--itG~~i~vdGG~ 278 (281)
T 3v2h_A 245 KFITVEQVASLALYLAGDDAAQ--ITGTHVSMDGGW 278 (281)
T ss_dssp SCBCHHHHHHHHHHHHSSGGGG--CCSCEEEESTTG
T ss_pred CccCHHHHHHHHHHHcCCCcCC--CCCcEEEECCCc
Confidence 8999999999999999764321 113389998874
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=190.31 Aligned_cols=203 Identities=13% Similarity=0.100 Sum_probs=149.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhh-hccCCCceeeecCCCCC-chhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLS-EIEGKPYDVAATHHSTP-LPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~-~~g~~~~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
||++||||||||+||++++++|+ ++| ++|+++.|+++ ....+.. ....+.++.+|++|++++.++++ ++|+
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g---~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~---~~d~ 76 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTD---MHITLYGRQLKTRIPPEII-DHERVTVIEGSFQNPGXLEQAVT---NAEV 76 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCC---CEEEEEESSHHHHSCHHHH-TSTTEEEEECCTTCHHHHHHHHT---TCSE
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCC---ceEEEEecCccccchhhcc-CCCceEEEECCCCCHHHHHHHHc---CCCE
Confidence 45569999999999999999999 899 89999999865 5444321 24578889999999998888887 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC-hhHHHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN-VYGKSKVAA 158 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~-~Y~~sK~~~ 158 (300)
|||+||.. |+. + .++++++++.++++||++||..+|+..+.+..+.... ... .|+.+|..+
T Consensus 77 vv~~ag~~---------------n~~-~-~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~~~~~~~-~~~~~y~~~K~~~ 138 (221)
T 3r6d_A 77 VFVGAMES---------------GSD-M-ASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFD-NLPISYVQGERQA 138 (221)
T ss_dssp EEESCCCC---------------HHH-H-HHHHHHHHHTTCCEEEEEEETTTTSCSCHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred EEEcCCCC---------------Chh-H-HHHHHHHHhcCCCeEEEEeeceecCCCCccccccccc-ccccHHHHHHHHH
Confidence 99999842 222 4 4999999999999999999999987654311111111 122 799999999
Q ss_pred HHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCc-ccCceeHHHHHHHHHHHH--hccccc
Q 022280 159 EKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE-CRCPVYVRDVVKIILALT--NRWLSE 235 (300)
Q Consensus 159 e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~~~~~~--~~~~~~ 235 (300)
|.++++.+.+++++||+.++++...... .....+.. ...+++.+|+|+++++++ +.+...
T Consensus 139 e~~~~~~~i~~~~vrpg~v~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~ 201 (221)
T 3r6d_A 139 RNVLRESNLNYTILRLTWLYNDPEXTDY-----------------ELIPEGAQFNDAQVSREAVVKAIFDILHAADETPF 201 (221)
T ss_dssp HHHHHHSCSEEEEEEECEEECCTTCCCC-----------------EEECTTSCCCCCEEEHHHHHHHHHHHHTCSCCGGG
T ss_pred HHHHHhCCCCEEEEechhhcCCCCCcce-----------------eeccCCccCCCceeeHHHHHHHHHHHHHhcChhhh
Confidence 9999998899999999999987321100 01111111 234899999999999999 664321
Q ss_pred cccccceeeecCCC
Q 022280 236 DKQMQLLLNVGGPD 249 (300)
Q Consensus 236 ~~~~~~i~ni~~~~ 249 (300)
.++.+.++.+.
T Consensus 202 ---~~~~~~i~~~~ 212 (221)
T 3r6d_A 202 ---HRTSIGVGEPG 212 (221)
T ss_dssp ---TTEEEEEECTT
T ss_pred ---hcceeeecCCC
Confidence 23367776543
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=196.57 Aligned_cols=213 Identities=18% Similarity=0.227 Sum_probs=159.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||+++++.|+++| ++|++++|+.+... ...+.++.+|++|+++++.+++ .++++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 97 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRN---YRVVATSRSIKPSA------DPDIHTVAGDISKPETADRIVREGIERFGRI 97 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSCCCCS------STTEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChhhcc------cCceEEEEccCCCHHHHHHHHHHHHHHCCCC
Confidence 46899999999999999999999999 89999999865432 1357778999999998666554 56799
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||...... +.+.++..+++|+.|++ ++++++ ++.+.++||++||...+.+... .+..
T Consensus 98 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~--------~~~~ 168 (260)
T 3un1_A 98 DSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFF-HITQRAAAEMLKQGSGHIVSITTSLVDQPMVG--------MPSA 168 (260)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEEECCTTTTSCBTT--------CCCH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCcEEEEEechhhccCCCC--------CccH
Confidence 99999999865322 33456788999999996 777766 4566779999999877654322 2467
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.||.+.+.+.+.++. ++.+++|+.++++.... . .. ..+... .+.+.+.+++|+|
T Consensus 169 ~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~----~----~~-~~~~~~-------~p~~r~~~~~dva 232 (260)
T 3un1_A 169 LASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPA----E----TH-STLAGL-------HPVGRMGEIRDVV 232 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCG----G----GH-HHHHTT-------STTSSCBCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCH----H----HH-HHHhcc-------CCCCCCcCHHHHH
Confidence 899999999998887643 46789999999875321 0 11 111111 2345788999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCccC
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
++++++.+.....|+ +|++++|...+
T Consensus 233 ~av~~L~~~~~itG~----~i~vdGG~~~~ 258 (260)
T 3un1_A 233 DAVLYLEHAGFITGE----ILHVDGGQNAG 258 (260)
T ss_dssp HHHHHHHHCTTCCSC----EEEESTTGGGC
T ss_pred HHHHHhcccCCCCCc----EEEECCCeecc
Confidence 999999655444455 99999986543
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=196.22 Aligned_cols=216 Identities=14% Similarity=0.140 Sum_probs=159.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||++++++|+++| ++|++++|+++....+.+.+...+.++.+|++|+++++++++ .++++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 82 (260)
T 1nff_A 6 TGKVALVSGGARGMGASHVRAMVAEG---AKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGL 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 899999998766555544444457778999999998766654 46789
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHH----hhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLS----SFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||..... .+.+.++..+++|+.|++ ++.+ .+++.+.++||++||...+.+.+. ..
T Consensus 83 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~ 151 (260)
T 1nff_A 83 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVF-LGIRAVVKPMKEAGRGSIINISSIEGLAGTVA----------CH 151 (260)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------BH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCEEEEEeehhhcCCCCC----------ch
Confidence 9999999976432 223356778999999995 5444 445567789999999888765432 67
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.||.+.+.+.+.++ .++.++||+.++++... .. .. .+. ......+.+++|+|
T Consensus 152 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--~~-------------~~-~~~--~~~~~~~~~~~dvA 213 (260)
T 1nff_A 152 GYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD--WV-------------PE-DIF--QTALGRAAEPVEVS 213 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT--TS-------------CT-TCS--CCSSSSCBCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc--cc-------------hh-hHH--hCccCCCCCHHHHH
Confidence 89999999999887654 35788999999987531 00 00 000 11234688999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCcc
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
+++++++...... ..+++|++++|...
T Consensus 214 ~~v~~l~s~~~~~--~~G~~~~v~gG~~~ 240 (260)
T 1nff_A 214 NLVVYLASDESSY--STGAEFVVDGGTVA 240 (260)
T ss_dssp HHHHHHHSGGGTT--CCSCEEEESTTGGG
T ss_pred HHHHHHhCccccC--CcCCEEEECCCeec
Confidence 9999999764221 11348999988643
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-27 Score=201.93 Aligned_cols=217 Identities=15% Similarity=0.183 Sum_probs=158.0
Q ss_pred CC-CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch---hh--hhhc-CCCceeEEEeecCCchhHHHHHHh
Q 022280 1 MS-KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP---QL--LLDA-LPHSFVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 1 ~~-~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~---~~--~~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 73 (300)
|. ||+|+||||||+||+++++.|+++| ++|+++.|+.... .. .... ...++.++++|++|++++..+++
T Consensus 1 M~~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~- 76 (308)
T 1qyc_A 1 MGSRSRILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK- 76 (308)
T ss_dssp -CCCCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH-
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhCC---CCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHc-
Confidence 54 7899999999999999999999999 8899999985422 11 1111 13567889999999999888887
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccccccCCCCCCCCCCCCCC-CChh
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGVKSFYKEEDEIAP-VNVY 151 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p-~~~Y 151 (300)
++|+|||+|+... +.++. +++++|++.+ +++||+ | +||.. .+|..+..| ...|
T Consensus 77 --~~d~vi~~a~~~~---------------~~~~~-~l~~aa~~~g~v~~~v~-S---~~g~~---~~~~~~~~p~~~~y 131 (308)
T 1qyc_A 77 --NVDVVISTVGSLQ---------------IESQV-NIIKAIKEVGTVKRFFP-S---EFGND---VDNVHAVEPAKSVF 131 (308)
T ss_dssp --TCSEEEECCCGGG---------------SGGGH-HHHHHHHHHCCCSEEEC-S---CCSSC---TTSCCCCTTHHHHH
T ss_pred --CCCEEEECCcchh---------------hhhHH-HHHHHHHhcCCCceEee-c---ccccC---ccccccCCcchhHH
Confidence 8999999998531 34454 9999999998 999984 3 34432 233344444 3578
Q ss_pred HHHHHHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHH
Q 022280 152 GKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALT 229 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~ 229 (300)
.+|..+|+++++.+.+++++||+.++|+......... . .....+.+.+++ +..++|+|++|++++++.++
T Consensus 132 -~sK~~~e~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l 203 (308)
T 1qyc_A 132 -EVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAG------L-TAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAV 203 (308)
T ss_dssp -HHHHHHHHHHHHHTCCBEEEECCEEHHHHTTTTTCTT------C-SSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHHhcCCCeEEEEeceecccccccccccc------c-cCCCCCceEEecCCCceEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999875321110000 0 001234455554 35789999999999999999
Q ss_pred hccccccccccceeeecC-CCccCHHHHHH
Q 022280 230 NRWLSEDKQMQLLLNVGG-PDRVSRVQMAE 258 (300)
Q Consensus 230 ~~~~~~~~~~~~i~ni~~-~~~~s~~e~~~ 258 (300)
+++...++ +|++.+ ++.+|+.|+++
T Consensus 204 ~~~~~~~~----~~~~~g~~~~~s~~e~~~ 229 (308)
T 1qyc_A 204 DDPRTLNK----TLYLRLPANTLSLNELVA 229 (308)
T ss_dssp SCGGGTTE----EEECCCGGGEEEHHHHHH
T ss_pred hCccccCe----EEEEeCCCCccCHHHHHH
Confidence 87543333 788765 46899999988
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-27 Score=199.76 Aligned_cols=228 Identities=15% Similarity=0.148 Sum_probs=161.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
++|++|||||+|+||++++++|+++| ++|++++|+++....+.+.+ +..+.++.+|++|+++++++++ .
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (263)
T 3ai3_A 6 SGKVAVITGSSSGIGLAIAEGFAKEG---AHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSS 82 (263)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 89999999865554443322 4567788999999998766654 4
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||..... ...+.++..+++|+.+++ ++++++. +.+.++||++||...+.+...
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 153 (263)
T 3ai3_A 83 FGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAV-RLARGLVPGMRARGGGAIIHNASICAVQPLWY-------- 153 (263)
T ss_dssp HSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEECchhhcCCCCC--------
Confidence 57899999999976432 123356778999999996 7766654 456789999999988866433
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCC------CCchHHHHHHHHhcCCceeeccCcc
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVP------KSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.||.+.+.+.+.++ .++.++||+.++++......+ ......+..... .. +.+.
T Consensus 154 --~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~p~ 224 (263)
T 3ai3_A 154 --EPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVA-DE------HAPI 224 (263)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHH-HH------HCTT
T ss_pred --cchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHH-hc------CCCC
Confidence 6789999999999887654 356889999998864210000 000001111111 00 0234
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+++.+++|+|+++++++...... ..+++|++++|...+
T Consensus 225 ~~~~~~~dvA~~~~~l~s~~~~~--~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 225 KRFASPEELANFFVFLCSERATY--SVGSAYFVDGGMLKT 262 (263)
T ss_dssp CSCBCHHHHHHHHHHHTSTTCTT--CCSCEEEESTTCCCC
T ss_pred CCCcCHHHHHHHHHHHcCccccC--CCCcEEEECCCcccc
Confidence 57899999999999999753211 113389999987655
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=195.44 Aligned_cols=219 Identities=16% Similarity=0.214 Sum_probs=161.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
.+|+||||||+|+||++++++|+++| ++|++++|+.+....+.+.++..+.++.+|++|+++++++++ .++++
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 87 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQG---ASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRV 87 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence 46899999999999999999999999 899999999877766665556678889999999988776665 45789
Q ss_pred CEEEEcccccCcc----------ccccChhhhhhcccccchHHHHHhhhhc----------cCCeEEEeeccccccCCCC
Q 022280 78 DVVVNCAALSVPR----------VCENDPDSAMSINVPSSLVNWLSSFTEN----------KENLLIHLSTDQVYEGVKS 137 (300)
Q Consensus 78 d~vih~a~~~~~~----------~~~~~~~~~~~~nv~~~~~~l~~~~~~~----------~~~~~v~~SS~~~~~~~~~ 137 (300)
|+||||||..... ...+.++..+++|+.+++ ++++++... +.++||++||...+.+...
T Consensus 88 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~ 166 (265)
T 2o23_A 88 DVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTF-NVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVG 166 (265)
T ss_dssp CEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTT
T ss_pred CEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCCCC
Confidence 9999999976432 123346678999999996 887776653 5679999999888765433
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC
Q 022280 138 FYKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD 210 (300)
Q Consensus 138 ~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
...|+.||.+.+.+.+.++ .++.+++|+.+.++.... .+ ..+. ..+... .
T Consensus 167 ----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~----~~~~-~~~~~~-------~ 223 (265)
T 2o23_A 167 ----------QAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS-LP----EKVC-NFLASQ-------V 223 (265)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------------CHHHHT-------C
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccc-cC----HHHH-HHHHHc-------C
Confidence 6789999999998887654 356889999987764211 00 0000 001011 1
Q ss_pred cc-cCceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 211 EC-RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 211 ~~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
.. ..+++++|+|++++++++.....|+ ++++.+|..+
T Consensus 224 ~~~~~~~~~~dva~~~~~l~~~~~~~G~----~i~vdgG~~~ 261 (265)
T 2o23_A 224 PFPSRLGDPAEYAHLVQAIIENPFLNGE----VIRLDGAIRM 261 (265)
T ss_dssp SSSCSCBCHHHHHHHHHHHHHCTTCCSC----EEEESTTCCC
T ss_pred CCcCCCCCHHHHHHHHHHHhhcCccCce----EEEECCCEec
Confidence 12 4578999999999999976544554 8999887654
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-27 Score=197.94 Aligned_cols=225 Identities=15% Similarity=0.057 Sum_probs=160.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|.+|++|||||+|+||++++++|+++| ++|++++|+.+......+. .+..+.++.+|++|.++++.+++ .
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDG---AHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNL 88 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999999 8999999986554433322 24467778999999988666554 4
Q ss_pred cCCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+||||||.... ..+.+.++..+++|+.+++ ++++++. +.+.++||++||...+.+.+.
T Consensus 89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 160 (260)
T 2zat_A 89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATV-LMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPN------- 160 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEEECCGGGTSCCTT-------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCCEEEEEechhhcCCCCC-------
Confidence 6789999999997531 1223346778999999996 7766654 456779999999988865433
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+.+.+.+.++ .++.+++|+.+..+....... ..... ..+. ...+.+++.+
T Consensus 161 ---~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~-~~~~-------~~~~~~~~~~ 226 (260)
T 2zat_A 161 ---LGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWM---DKARK-EYMK-------ESLRIRRLGN 226 (260)
T ss_dssp ---BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHS---SHHHH-HHHH-------HHHTCSSCBC
T ss_pred ---chhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhccc---ChHHH-HHHH-------hcCCCCCCCC
Confidence 6789999999999988764 356789999887653210000 00000 0010 0113456899
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
++|+|+++++++...... ..+++|++++|..++
T Consensus 227 ~~dva~~v~~l~s~~~~~--~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 227 PEDCAGIVSFLCSEDASY--ITGETVVVGGGTASR 259 (260)
T ss_dssp GGGGHHHHHHHTSGGGTT--CCSCEEEESTTCCCC
T ss_pred HHHHHHHHHHHcCcccCC--ccCCEEEECCCcccc
Confidence 999999999999764321 113389999987765
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-27 Score=197.21 Aligned_cols=230 Identities=15% Similarity=0.128 Sum_probs=167.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~~ 77 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+++....+.+.++..+.++.+|++|.++++.++ +.++++
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGG---AEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 35799999999999999999999999 89999999877666666665667888999999999876655 446789
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
|++|||||...... +.+.++..+++|+.+++ .+++++... ..++||++||...+.+.+. ...|
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~~Y 152 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAF-FTVQRLTPLIREGGSIVFTSSVADEGGHPG----------MSVY 152 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHGGGEEEEEEEEEECCGGGSSBCTT----------BHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHhcCCEEEEECChhhcCCCCC----------chHH
Confidence 99999999865432 34456788999999996 888887652 2359999999888766543 6799
Q ss_pred HHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCC-CCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHH
Q 022280 152 GKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISP-VPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 223 (300)
+.||.+.+.+.+.++. ++..++|+.+..+..... .+......+. ..... ..+.+.+.+++|+|+
T Consensus 153 ~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~-~~~~~-------~~p~~r~~~pedvA~ 224 (255)
T 4eso_A 153 SASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFK-TLGDN-------ITPMKRNGTADEVAR 224 (255)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHH-HHHHH-------HSTTSSCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHH-HHHhc-------cCCCCCCcCHHHHHH
Confidence 9999999998876643 567899999987743211 1100000111 11100 123456889999999
Q ss_pred HHHHHHhccccccccccceeeecCCCccCHHHH
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQM 256 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~ 256 (300)
++++++.. .. ...++++++++|...++.++
T Consensus 225 ~v~~L~s~-~~--~itG~~i~vdGG~~~~l~~~ 254 (255)
T 4eso_A 225 AVLFLAFE-AT--FTTGAKLAVDGGLGQKLSTA 254 (255)
T ss_dssp HHHHHHHT-CT--TCCSCEEEESTTTTTTBCC-
T ss_pred HHHHHcCc-Cc--CccCCEEEECCCccccCcCc
Confidence 99999874 21 11234899999987665443
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=198.65 Aligned_cols=216 Identities=14% Similarity=0.170 Sum_probs=156.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-------CchhhhhhcCCCceeEEEeecCCchhHHHHHHhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-------PLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
+||+||||||||+||++++++|+++| ++|+++.|++ ++...+......++.++++|++|++++..+++
T Consensus 1 ~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~-- 75 (307)
T 2gas_A 1 TENKILILGPTGAIGRHIVWASIKAG---NPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIK-- 75 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHHT---CCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--
T ss_pred CCcEEEEECCCchHHHHHHHHHHhCC---CcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHh--
Confidence 36889999999999999999999999 8899999986 21111111012457789999999988888877
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CCeEEEeeccccccCCCCCCCCCCCCCC-CChhH
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-ENLLIHLSTDQVYEGVKSFYKEEDEIAP-VNVYG 152 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p-~~~Y~ 152 (300)
++|+|||+|+... +.++. +++++|++.+ +++||+ | +||.. .+|..+..| .+.|
T Consensus 76 -~~d~vi~~a~~~~---------------~~~~~-~l~~aa~~~g~v~~~v~-S---~~g~~---~~~~~~~~p~~~~y- 130 (307)
T 2gas_A 76 -QVDIVICAAGRLL---------------IEDQV-KIIKAIKEAGNVKKFFP-S---EFGLD---VDRHDAVEPVRQVF- 130 (307)
T ss_dssp -TCSEEEECSSSSC---------------GGGHH-HHHHHHHHHCCCSEEEC-S---CCSSC---TTSCCCCTTHHHHH-
T ss_pred -CCCEEEECCcccc---------------cccHH-HHHHHHHhcCCceEEee-c---ccccC---cccccCCCcchhHH-
Confidence 8999999998532 34454 9999999988 999983 3 35432 233334444 4578
Q ss_pred HHHHHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHh
Q 022280 153 KSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 153 ~sK~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~ 230 (300)
.+|..+|+++++.+.+++++||+.++++......... . .....+.+.+++ +..++|++++|+|++++.+++
T Consensus 131 ~sK~~~e~~~~~~~i~~~~lrp~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~ 203 (307)
T 2gas_A 131 EEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLD------A-TDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAAN 203 (307)
T ss_dssp HHHHHHHHHHHHHTCCBEEEECCEETTTTGGGTTCTT------C-SSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCeEEEEcceeeccccccccccc------c-ccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHc
Confidence 9999999999999999999999998875421100000 0 001233455554 357899999999999999998
Q ss_pred ccccccccccceeeecC-CCccCHHHHHH
Q 022280 231 RWLSEDKQMQLLLNVGG-PDRVSRVQMAE 258 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~-~~~~s~~e~~~ 258 (300)
.+...++ +|++.+ ++.+|+.|+++
T Consensus 204 ~~~~~~~----~~~~~~~~~~~s~~e~~~ 228 (307)
T 2gas_A 204 DPNTLNK----AVHIRLPKNYLTQNEVIA 228 (307)
T ss_dssp CGGGTTE----EEECCCGGGEEEHHHHHH
T ss_pred CccccCc----eEEEeCCCCcCCHHHHHH
Confidence 7643333 777765 46899999988
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=196.15 Aligned_cols=227 Identities=18% Similarity=0.176 Sum_probs=156.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC----------CceeEEEeecCCchhHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP----------HSFVFFDVDLKSGSGFDAV 70 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~ 70 (300)
|++++||||||+|+||+++++.|+++| ++|++++|+.+....+.+.+. ..+.++.+|++|.++++.+
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 81 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEG---ATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCL 81 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHH
Confidence 346799999999999999999999999 899999998665554444331 4567889999999887666
Q ss_pred HHh----cCCC-CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCC
Q 022280 71 ALK----FGQP-DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVK 136 (300)
Q Consensus 71 ~~~----~~~~-d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~ 136 (300)
++. ++++ |+||||||..... .+.+.++..+++|+.|++ ++++++.+ .+ .++||++||...+.+.+
T Consensus 82 ~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 160 (264)
T 2pd6_A 82 LEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTF-LVTQAAAQALVSNGCRGSIINISSIVGKVGNV 160 (264)
T ss_dssp HHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEEECCTHHHHCCT
T ss_pred HHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHH-HHHHHHHHHHHhcCCCceEEEECChhhccCCC
Confidence 553 4677 9999999976532 133456788999999996 88777665 24 56999999987654432
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc
Q 022280 137 SFYKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH 209 (300)
Q Consensus 137 ~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
+...|+.||.+++.+++.++ .++.++||+.++++.... ....+..... . +
T Consensus 161 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----~~~~~~~~~~-~-------~ 217 (264)
T 2pd6_A 161 ----------GQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK-----VPQKVVDKIT-E-------M 217 (264)
T ss_dssp ----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC---------------CTG-G-------G
T ss_pred ----------CChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhh-----cCHHHHHHHH-H-------h
Confidence 26789999999998887653 357889999999885321 0111111000 0 1
Q ss_pred CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHH
Q 022280 210 DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQM 256 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~ 256 (300)
.....+++++|+|+++++++..... ...+..+++.+|..++...+
T Consensus 218 ~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gg~~~~~~~~ 262 (264)
T 2pd6_A 218 IPMGHLGDPEDVADVVAFLASEDSG--YITGTSVEVTGGLFMAENLY 262 (264)
T ss_dssp CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTTC-------
T ss_pred CCCCCCCCHHHHHHHHHHHcCCccc--CCCCCEEEECCCceeccccC
Confidence 1234688999999999999976321 11234899999877665543
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=193.08 Aligned_cols=221 Identities=15% Similarity=0.152 Sum_probs=159.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+++....+.+.++..+.++.+|++|+++++.+++ .+++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAG---ARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999 899999998766655555555567788999999988766654 4678
Q ss_pred CCEEEEcccccCcc----ccccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 77 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
+|+||||||..... .+.+.++..+++|+.+++. .+++.+++.+.++||++||...+.+.+. ..
T Consensus 80 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~ 149 (254)
T 1hdc_A 80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLAL----------TS 149 (254)
T ss_dssp CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------CH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCC----------ch
Confidence 99999999976432 2234567889999999851 4455555667789999999887755432 67
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc-CcccCce-eHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH-DECRCPV-YVRD 220 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i-~v~D 220 (300)
.|+.||.+.+.+.+.++. ++.++||+.++++.. .. ......-.+.. .....+. +++|
T Consensus 150 ~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-------------~~-~~~~~~~~~~~~~p~~~~~~~~~d 215 (254)
T 1hdc_A 150 SYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT-------------AE-TGIRQGEGNYPNTPMGRVGNEPGE 215 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-------------HH-HTCCCSTTSCTTSTTSSCB-CHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc-------------cc-cchhHHHHHHhcCCCCCCCCCHHH
Confidence 899999999998877643 467899999986521 11 10000000001 1234578 9999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCc
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+|+++++++...... ..++++++.+|..
T Consensus 216 vA~~v~~l~s~~~~~--~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 216 IAGAVVKLLSDTSSY--VTGAELAVDGGWT 243 (254)
T ss_dssp HHHHHHHHHSGGGTT--CCSCEEEESTTTT
T ss_pred HHHHHHHHhCchhcC--CCCCEEEECCCcc
Confidence 999999999764211 1133899988753
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=194.20 Aligned_cols=226 Identities=15% Similarity=0.131 Sum_probs=159.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+++....+.+.+...+.++++|++|+++++++++ .++++
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~i 87 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAG---ATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGF 87 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 35799999999999999999999999 899999998766555555554467778999999998766554 46789
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
|+||||||...... ..+.++..+++|+.+++ ++++++.. .+ .++||++||...+.+.+. .
T Consensus 88 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~ 156 (263)
T 3ak4_A 88 DLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVF-LANQIACRHFLASNTKGVIVNTASLAAKVGAPL----------L 156 (263)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTT----------C
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCeEEEEecccccccCCCC----------c
Confidence 99999999764321 23346778999999996 77666553 34 579999999887654322 6
Q ss_pred ChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCC-----C-CCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 149 NVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPV-----P-KSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
..|+.||.+.+.+.+.++ .++.++||+.++++...... . .......... +.. ..+.+++
T Consensus 157 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~p~~~~ 228 (263)
T 3ak4_A 157 AHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAE-YVS-------LTPLGRI 228 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHH-HHH-------TCTTCSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHH-HHh-------cCCCCCC
Confidence 789999999999887653 46788999999876311000 0 0000000100 100 1234578
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
++++|+|+++++++...... ..+++|++++|..+
T Consensus 229 ~~~~dvA~~v~~l~s~~~~~--~tG~~~~vdgG~~~ 262 (263)
T 3ak4_A 229 EEPEDVADVVVFLASDAARF--MTGQGINVTGGVRM 262 (263)
T ss_dssp BCHHHHHHHHHHHHSGGGTT--CCSCEEEESSSSSC
T ss_pred cCHHHHHHHHHHHhCccccC--CCCCEEEECcCEeC
Confidence 99999999999999764211 11338999988543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-27 Score=196.57 Aligned_cols=224 Identities=16% Similarity=0.120 Sum_probs=162.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++|++|||||+|+||++++++|+++| ++|++++|+.+....+.+. .+..+.++.+|++|+++++.+++ .+
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAG---ASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999 8999999986655544332 35678889999999998666554 46
Q ss_pred CCCCEEEEcccccCcc---ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR---VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~---~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+++|+||||||..... .+.+.++..+++|+.|++ .+++++. +.+.++||++||...+.+...
T Consensus 88 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 156 (256)
T 3gaf_A 88 GKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLF-RLSQLAAPHMQKAGGGAILNISSMAGENTNVR---------- 156 (256)
T ss_dssp SCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEEECCGGGTCCCTT----------
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEEcCHHHcCCCCC----------
Confidence 7999999999986542 233456788999999996 7777753 456679999999888765433
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.||.+.+.+.+.++. ++..++|+.+..+..... .......... .. .+.+++.+++|
T Consensus 157 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~----~~~~~~~~~~-~~-------~p~~r~~~~~d 224 (256)
T 3gaf_A 157 MASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATV----LTPEIERAML-KH-------TPLGRLGEAQD 224 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHH----CCHHHHHHHH-TT-------CTTSSCBCHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhc----cCHHHHHHHH-hc-------CCCCCCCCHHH
Confidence 67899999999999887653 456788888775421000 0011111111 11 23457899999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCccCH
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSR 253 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~ 253 (300)
+|+++++++...... ..++++++++|...++
T Consensus 225 va~~~~~L~s~~~~~--itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 225 IANAALFLCSPAAAW--ISGQVLTVSGGGVQEL 255 (256)
T ss_dssp HHHHHHHHHSGGGTT--CCSCEEEESTTSCCC-
T ss_pred HHHHHHHHcCCcccC--ccCCEEEECCCccccC
Confidence 999999999753221 1133999999987664
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-27 Score=193.57 Aligned_cols=190 Identities=15% Similarity=0.112 Sum_probs=148.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|++|||||+|+||++++++|+++ +|++++|+++....+.+..+. .++.+|++|+++++.+++.++++|+|||+
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~-----~V~~~~r~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 73 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH-----DLLLSGRRAGALAELAREVGA--RALPADLADELEAKALLEEAGPLDLLVHA 73 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS-----EEEEECSCHHHHHHHHHHHTC--EECCCCTTSHHHHHHHHHHHCSEEEEEEC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC-----CEEEEECCHHHHHHHHHhccC--cEEEeeCCCHHHHHHHHHhcCCCCEEEEC
Confidence 58999999999999999999988 488889986655554443332 66889999999998888767789999999
Q ss_pred ccccCcc----ccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHH
Q 022280 84 AALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAE 159 (300)
Q Consensus 84 a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e 159 (300)
||..... .+.+.++..+++|+.+++ ++++++.+.+.++||++||..+|.+.. +...|+.+|.++|
T Consensus 74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~iv~~sS~~~~~~~~----------~~~~Y~~sK~a~~ 142 (207)
T 2yut_A 74 VGKAGRASVREAGRDLVEEMLAAHLLTAA-FVLKHARFQKGARAVFFGAYPRYVQVP----------GFAAYAAAKGALE 142 (207)
T ss_dssp CCCCCCBCSCC---CHHHHHHHHHHHHHH-HHHHHCCEEEEEEEEEECCCHHHHSST----------TBHHHHHHHHHHH
T ss_pred CCcCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHhcCCcEEEEEcChhhccCCC----------CcchHHHHHHHHH
Confidence 9976432 234456788999999997 999999777778999999998886543 3679999999999
Q ss_pred HHHHHH-------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 160 KFIYEK-------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 160 ~~~~~~-------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
.+++.+ +.+++++||+.++++... . .+.+.+++++++|+|++++++++++
T Consensus 143 ~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~-----------------~------~~~~~~~~~~~~dva~~~~~~~~~~ 199 (207)
T 2yut_A 143 AYLEAARKELLREGVHLVLVRLPAVATGLWA-----------------P------LGGPPKGALSPEEAARKVLEGLFRE 199 (207)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCCBCSGGGG-----------------G------GTSCCTTCBCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhCCEEEEEecCcccCCCcc-----------------c------cCCCCCCCCCHHHHHHHHHHHHhCC
Confidence 988765 346789999999876410 0 0123468999999999999999875
Q ss_pred cc
Q 022280 233 LS 234 (300)
Q Consensus 233 ~~ 234 (300)
..
T Consensus 200 ~~ 201 (207)
T 2yut_A 200 PV 201 (207)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-27 Score=196.28 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=159.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++|++|||||+|+||++++++|+++| ++|++++|+++......+. .+..+.++.+|++|+++++.+++ .+
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLG---ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999 8999999986554443332 24567788999999988776664 34
Q ss_pred -CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 -GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 -~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|+|||+||..... .+.+.++..+++|+.|++ ++++++. +.+.++||++||...+.+.+.
T Consensus 85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 155 (260)
T 2ae2_A 85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAY-HLSVLAHPFLKASERGNVVFISSVSGALAVPY-------- 155 (260)
T ss_dssp TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTSSEEEEEECCGGGTSCCTT--------
T ss_pred CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEEcchhhccCCCC--------
Confidence 6899999999976432 223456778999999996 7777763 456679999999887655432
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+.+.+.+.++. ++.+++|+.+.++..............+.... . ..+.+++.++
T Consensus 156 --~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~ 225 (260)
T 2ae2_A 156 --EAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLI-D-------RCALRRMGEP 225 (260)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHH-H-------TSTTCSCBCH
T ss_pred --cchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHH-h-------cCCCCCCCCH
Confidence 67899999999999887643 45779998887642100000000000000111 1 1234568999
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+|+|+++++++...... ..++++++.+|...+
T Consensus 226 ~dvA~~v~~l~s~~~~~--~tG~~~~vdgG~~~~ 257 (260)
T 2ae2_A 226 KELAAMVAFLCFPAASY--VTGQIIYVDGGLMAN 257 (260)
T ss_dssp HHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGC
T ss_pred HHHHHHHHHHcCccccC--CCCCEEEECCCcccc
Confidence 99999999999753221 113389999886544
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=197.99 Aligned_cols=222 Identities=14% Similarity=0.081 Sum_probs=145.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----c
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
++|+||||||+|+||++++++|+++| ++|++++|+++....+... .+..+.++.+|++|.++++.+++. +
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFG---AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF 89 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 8999999986554443322 244677889999999887776654 3
Q ss_pred -CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 -GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 -~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|+|||+||..... ...+.++..+++|+.+++ ++++++ ++.+.++||++||...+.+...
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 160 (266)
T 1xq1_A 90 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAY-HLSQLAHPLLKASGCGNIIFMSSIAGVVSASV-------- 160 (266)
T ss_dssp TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSCEEEEEC------------------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEEccchhccCCCC--------
Confidence 6899999999976432 123355678999999996 887777 4567789999999887765433
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+.+.+++.++ .++.++||+.++++...... ...+..... . ......++++
T Consensus 161 --~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~----~~~~~~~~~-~-------~~~~~~~~~~ 226 (266)
T 1xq1_A 161 --GSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY----DDEFKKVVI-S-------RKPLGRFGEP 226 (266)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-------------------------------------CCG
T ss_pred --CchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc----CHHHHHHHH-h-------cCCCCCCcCH
Confidence 6789999999999887653 46789999999988532110 001111110 0 0122458899
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
+|+|+++++++...... ..+++|++++|...
T Consensus 227 ~dva~~~~~l~~~~~~~--~~G~~~~v~gG~~~ 257 (266)
T 1xq1_A 227 EEVSSLVAFLCMPAASY--ITGQTICVDGGLTV 257 (266)
T ss_dssp GGGHHHHHHHTSGGGTT--CCSCEEECCCCEEE
T ss_pred HHHHHHHHHHcCccccC--ccCcEEEEcCCccc
Confidence 99999999999753221 11338999988643
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=191.65 Aligned_cols=220 Identities=17% Similarity=0.166 Sum_probs=160.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-Cchhhhhh---cCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
++|++|||||+|+||++++++|+++| ++|++.+++. +....+.+ ..+..+.++++|++|.++++.+++ .
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEG---YNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQ 79 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999 8998887753 33333322 234567789999999998666554 4
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||..... .+.+.++..+++|+.|++ ++++++ ++.+.++||++||...+.+.+.
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 150 (246)
T 3osu_A 80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVF-NCIQKATPQMLRQRSGAIINLSSVVGAVGNPG-------- 150 (246)
T ss_dssp HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCCEEEEEcchhhcCCCCC--------
Confidence 67999999999986432 233456778999999996 887777 5566779999999887655433
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+.+.+.+.++. ++.+++|+.+.++.... ....+..... .. .+...+.++
T Consensus 151 --~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~-----~~~~~~~~~~-~~-------~p~~r~~~~ 215 (246)
T 3osu_A 151 --QANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA-----LSDELKEQML-TQ-------IPLARFGQD 215 (246)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSC-----SCHHHHHHHH-TT-------CTTCSCBCH
T ss_pred --ChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccc-----cCHHHHHHHH-hc-------CCCCCCcCH
Confidence 67899999999998876643 46789999998875321 1222332222 22 234568899
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+|+|+++++++...... ..+++|++++|..
T Consensus 216 ~dva~~v~~l~s~~~~~--itG~~i~vdgG~~ 245 (246)
T 3osu_A 216 TDIANTVAFLASDKAKY--ITGQTIHVNGGMY 245 (246)
T ss_dssp HHHHHHHHHHTSGGGTT--CCSCEEEESTTSC
T ss_pred HHHHHHHHHHhCccccC--CCCCEEEeCCCcc
Confidence 99999999999764322 1133899998753
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=197.96 Aligned_cols=228 Identities=13% Similarity=0.065 Sum_probs=167.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|.+|++|||||+|+||++++++|+++| ++|++++|+.++.....+.++..+.++++|++|.++++++++.++++|+|
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~l 90 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRG---ATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVL 90 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence 356899999999999999999999999 89999999977777777667778889999999999999999988889999
Q ss_pred EEcccccCcc--ccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC---CCCCCCCCCCCChhHHHH
Q 022280 81 VNCAALSVPR--VCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS---FYKEEDEIAPVNVYGKSK 155 (300)
Q Consensus 81 ih~a~~~~~~--~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~---~~~E~~~~~p~~~Y~~sK 155 (300)
|||||+.... .+.+.++..+++|+.|++ ++++++.....++||++||...+..... ...|..+..+...|+.||
T Consensus 91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 169 (291)
T 3rd5_A 91 INNAGIMAVPYALTVDGFESQIGTNHLGHF-ALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSK 169 (291)
T ss_dssp EECCCCCSCCCCBCTTSCBHHHHHHTHHHH-HHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHHHHHH
T ss_pred EECCcCCCCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhheeEeechhhccCCCCcccccccccCCCCcchHHHHH
Confidence 9999986532 345567889999999997 9999998877779999999887755332 222333445567899999
Q ss_pred HHHHHHHHHHcC---------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHH
Q 022280 156 VAAEKFIYEKCS---------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIIL 226 (300)
Q Consensus 156 ~~~e~~~~~~~~---------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 226 (300)
.+.+.+.+.++. ++..++||.|..+-.... ...+. ..+ ...+ ..+-..+++|+|+.++
T Consensus 170 ~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~-----~~~~~-~~~-~~~~------~~~~~~~~~~~A~~~~ 236 (291)
T 3rd5_A 170 LANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGAS-----GRKLG-DAL-MSAA------TRVVATDADFGARQTL 236 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC---------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCcccccccc-----chHHH-HHH-HHHH------HHHHhCCHHHHHHHHH
Confidence 999998876543 446688888865532110 00011 000 0000 0112245999999999
Q ss_pred HHHhccccccccccceeeecCCC
Q 022280 227 ALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 227 ~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++..+...|+ .+++.+|.
T Consensus 237 ~l~~~~~~~G~----~~~vdgG~ 255 (291)
T 3rd5_A 237 YAASQDLPGDS----FVGPRFGY 255 (291)
T ss_dssp HHHHSCCCTTC----EEEETTSS
T ss_pred HHHcCCCCCCc----eeCCcccc
Confidence 99998655554 78887653
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=189.85 Aligned_cols=202 Identities=14% Similarity=0.154 Sum_probs=140.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|+||+||||||||+||++++++|+++|. ++|+++.|+++....+ ....+.++++|++|++++..+++ ++|+|
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~--~~V~~~~R~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~---~~D~v 92 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQT--IKQTLFARQPAKIHKP---YPTNSQIIMGDVLNHAALKQAMQ---GQDIV 92 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTT--EEEEEEESSGGGSCSS---CCTTEEEEECCTTCHHHHHHHHT---TCSEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCC--ceEEEEEcChhhhccc---ccCCcEEEEecCCCHHHHHHHhc---CCCEE
Confidence 4678999999999999999999999994 5899999986554332 23567889999999999888887 89999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC---CCCCCCCCCCCChhHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS---FYKEEDEIAPVNVYGKSKVA 157 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~---~~~E~~~~~p~~~Y~~sK~~ 157 (300)
||+|+... .. . .+ .++++++++.++++||++||..+|+..+. +..|..+..+. ..+..
T Consensus 93 v~~a~~~~-------~~--~-----~~-~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 153 (236)
T 3qvo_A 93 YANLTGED-------LD--I-----QA-NSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPL----KPFRR 153 (236)
T ss_dssp EEECCSTT-------HH--H-----HH-HHHHHHHHHTTCCEEEEECCCCC----------------CGGG----HHHHH
T ss_pred EEcCCCCc-------hh--H-----HH-HHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhcccchH----HHHHH
Confidence 99998421 11 1 12 38899999999999999999999987654 22333333333 34455
Q ss_pred HHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCc-ccCceeHHHHHHHHHHHHhcccccc
Q 022280 158 AEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE-CRCPVYVRDVVKIILALTNRWLSED 236 (300)
Q Consensus 158 ~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~~~~~~~~~~~~~ 236 (300)
+|+.++..+.+++++||+.++++.... ......+.. ...+++++|+|++++++++.+..
T Consensus 154 ~~~~l~~~gi~~~~vrPg~i~~~~~~~------------------~~~~~~~~~~~~~~i~~~DvA~~i~~ll~~~~~-- 213 (236)
T 3qvo_A 154 AADAIEASGLEYTILRPAWLTDEDIID------------------YELTSRNEPFKGTIVSRKSVAALITDIIDKPEK-- 213 (236)
T ss_dssp HHHHHHTSCSEEEEEEECEEECCSCCC------------------CEEECTTSCCSCSEEEHHHHHHHHHHHHHSTTT--
T ss_pred HHHHHHHCCCCEEEEeCCcccCCCCcc------------------eEEeccCCCCCCcEECHHHHHHHHHHHHcCccc--
Confidence 566777778899999999999864311 001111111 24689999999999999998541
Q ss_pred ccccceeeecCCCc
Q 022280 237 KQMQLLLNVGGPDR 250 (300)
Q Consensus 237 ~~~~~i~ni~~~~~ 250 (300)
..+++|++++++.
T Consensus 214 -~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 214 -HIGENIGINQPGT 226 (236)
T ss_dssp -TTTEEEEEECSSC
T ss_pred -ccCeeEEecCCCC
Confidence 1244899988764
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=194.22 Aligned_cols=223 Identities=13% Similarity=0.159 Sum_probs=159.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++++||||||+|+||++++++|+++| ++|++++|+.+....+.+. .+..+.++.+|++|+++++.+++ .+
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAG---ARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999 8999999986544433322 24567889999999998776665 35
Q ss_pred CCCCEEEEcccccC-cc----ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSV-PR----VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~-~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|+||||||... .. ...+.++..+++|+.+++ ++++++.+ .+.++||++||...+.+.+.
T Consensus 89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 159 (260)
T 3awd_A 89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMF-RSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRP-------- 159 (260)
T ss_dssp SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS--------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHH-HHHHHHHHHHhhcCCCEEEEEecchhcccCCC--------
Confidence 78999999999764 21 122345678999999996 77777654 46679999999876644322
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
.|...|+.||.+.|.+++.++ .++.++||+.++++....... ...+..... .. .....++++
T Consensus 160 ~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~---~~~~~~~~~-~~-------~~~~~~~~~ 228 (260)
T 3awd_A 160 QQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGME---KPELYDAWI-AG-------TPMGRVGQP 228 (260)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHT---CHHHHHHHH-HT-------CTTSSCBCH
T ss_pred CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccC---ChHHHHHHH-hc-------CCcCCCCCH
Confidence 234789999999999887653 357889999999885320000 112222222 11 123468899
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+|+++++++...... ..+.+|++++|.
T Consensus 229 ~dva~~~~~l~~~~~~~--~~G~~~~v~gg~ 257 (260)
T 3awd_A 229 DEVASVVQFLASDAASL--MTGAIVNVDAGF 257 (260)
T ss_dssp HHHHHHHHHHHSGGGTT--CCSCEEEESTTT
T ss_pred HHHHHHHHHHhCchhcc--CCCcEEEECCce
Confidence 99999999999763221 113389998875
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=187.99 Aligned_cols=188 Identities=12% Similarity=0.103 Sum_probs=146.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++|+||||||+|+||++++++|+ +| ++|++++|+++ .+.+|++|+++++++++.++++|+||
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~g---~~V~~~~r~~~--------------~~~~D~~~~~~~~~~~~~~~~~d~vi 63 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-KK---AEVITAGRHSG--------------DVTVDITNIDSIKKMYEQVGKVDAIV 63 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-TT---SEEEEEESSSS--------------SEECCTTCHHHHHHHHHHHCCEEEEE
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-CC---CeEEEEecCcc--------------ceeeecCCHHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999999 99 89999998753 27899999999999998877899999
Q ss_pred EcccccCccc----cccChhhhhhcccccchHHHHHhhhhc---cCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHH
Q 022280 82 NCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN---KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKS 154 (300)
Q Consensus 82 h~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~s 154 (300)
|+||...... +.+.++..+++|+.++. ++++++.+. + ++||++||...+.+.+. ...|+.+
T Consensus 64 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~~----------~~~Y~~s 131 (202)
T 3d7l_A 64 SATGSATFSPLTELTPEKNAVTISSKLGGQI-NLVLLGIDSLNDK-GSFTLTTGIMMEDPIVQ----------GASAAMA 131 (202)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHTTTHHHH-HHHHTTGGGEEEE-EEEEEECCGGGTSCCTT----------CHHHHHH
T ss_pred ECCCCCCCCChhhCCHHHHHHHHhhccHHHH-HHHHHHHHHhccC-CEEEEEcchhhcCCCCc----------cHHHHHH
Confidence 9999764322 22334577899999996 999998875 4 69999999877655432 6789999
Q ss_pred HHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHH
Q 022280 155 KVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 155 K~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 228 (300)
|.+.|.+++.++. ++.++||+.++++.. . . . .+.+.+++++++|+|++++.+
T Consensus 132 K~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~----------~-----~-~------~~~~~~~~~~~~dva~~~~~~ 189 (202)
T 3d7l_A 132 NGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD----------K-----L-E------PFFEGFLPVPAAKVARAFEKS 189 (202)
T ss_dssp HHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH----------H-----H-G------GGSTTCCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCeEEEEEecCccCCchh----------h-----h-h------hhccccCCCCHHHHHHHHHHh
Confidence 9999999988753 568899999987631 0 0 0 012346789999999999988
Q ss_pred Hhccccccccccceeeec
Q 022280 229 TNRWLSEDKQMQLLLNVG 246 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~ 246 (300)
+... ..|+ +||+.
T Consensus 190 ~~~~-~~G~----~~~vd 202 (202)
T 3d7l_A 190 VFGA-QTGE----SYQVY 202 (202)
T ss_dssp HHSC-CCSC----EEEEC
T ss_pred hhcc-ccCc----eEecC
Confidence 8543 2333 78763
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=195.59 Aligned_cols=228 Identities=16% Similarity=0.171 Sum_probs=161.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc------------hhhh---hhcCCCceeEEEeecCCchh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL------------PQLL---LDALPHSFVFFDVDLKSGSG 66 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~------------~~~~---~~~~~~~~~~~~~D~~~~~~ 66 (300)
.+|++|||||+|+||+++++.|+++| ++|++++|++.. .... ....+..+.++++|++|+++
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 85 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAG---ADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAA 85 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 46899999999999999999999999 899999997321 1111 12235677889999999998
Q ss_pred HHHHHH----hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccC
Q 022280 67 FDAVAL----KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEG 134 (300)
Q Consensus 67 ~~~~~~----~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~ 134 (300)
++.+++ .++++|++|||||+.... .+.+.++..+++|+.|++ ++++++ .+.+.++||++||...+.+
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 164 (281)
T 3s55_A 86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTF-NTIAAVAPGMIKRNYGRIVTVSSMLGHSA 164 (281)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGGSC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCCEEEEECChhhcCC
Confidence 766654 467999999999986532 233456788999999996 777764 4456679999999888765
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCC------C---CCchHHHHHHH
Q 022280 135 VKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPV------P---KSLPIQWIDSV 198 (300)
Q Consensus 135 ~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~------~---~~~~~~~~~~~ 198 (300)
... ...|+.||.+++.+.+.++. ++.+++|+.|+++...... + ...... ....
T Consensus 165 ~~~----------~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 233 (281)
T 3s55_A 165 NFA----------QASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKD-VESV 233 (281)
T ss_dssp CTT----------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHH-HHHH
T ss_pred CCC----------CchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhH-HHHH
Confidence 443 67899999999998887653 4678999999987542100 0 000000 0000
Q ss_pred HhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 199 LSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 199 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+ ...+...+++.+++|+|+++++++...... ..++++++++|...+
T Consensus 234 ~------~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~--itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 234 F------ASLHLQYAPFLKPEEVTRAVLFLVDEASSH--ITGTVLPIDAGATAR 279 (281)
T ss_dssp H------HHHCSSSCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGG
T ss_pred H------HhhhccCcCCCCHHHHHHHHHHHcCCcccC--CCCCEEEECCCcccC
Confidence 0 011122367899999999999999864322 113399999987654
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=191.33 Aligned_cols=222 Identities=17% Similarity=0.159 Sum_probs=154.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-CchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFG 75 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~ 75 (300)
|++|++|||||+|+||++++++|+++| ++|++++|++ +.........+..+.++++|++|+++++.+++ .++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEG---ADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFG 81 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999999 8999999986 44443333345667889999999998776654 467
Q ss_pred CCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|+||||||..... .+.+.++..+++|+.+++ ++.++ +++.+.++||++||...+.+.+.
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 150 (249)
T 2ew8_A 82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGF-LMAKAFVPGMKRNGWGRIINLTSTTYWLKIEA---------- 150 (249)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGGSCCSS----------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCeEEEEEcchhhccCCCC----------
Confidence 999999999976432 123346678999999985 66666 55566789999999988765433
Q ss_pred CChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.||.+.+.+.+.++ .++.+++|+.+.++....... ... .... . .+. .....+.+++|
T Consensus 151 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~----~~~-~~~~-~--~~~---~~~~~~~~p~d 219 (249)
T 2ew8_A 151 YTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASAL----SAM-FDVL-P--NML---QAIPRLQVPLD 219 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------------CTT---SSSCSCCCTHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccc----cch-hhHH-H--Hhh---CccCCCCCHHH
Confidence 6789999999999888764 356889999998764210000 000 0000 0 000 22346889999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+++++++...... ..++++++.+|.
T Consensus 220 va~~~~~l~s~~~~~--~tG~~~~vdGG~ 246 (249)
T 2ew8_A 220 LTGAAAFLASDDASF--ITGQTLAVDGGM 246 (249)
T ss_dssp HHHHHHHHTSGGGTT--CCSCEEEESSSC
T ss_pred HHHHHHHHcCcccCC--CCCcEEEECCCc
Confidence 999999999753211 113389998874
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=194.18 Aligned_cols=222 Identities=16% Similarity=0.183 Sum_probs=162.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||+++++.|+++| ++|++++|+.+....+.+..+..+.++++|++|+++++.+++ .++++
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 102 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNG---AYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRV 102 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 899999998776666666566778889999999998666554 46799
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||...... ..+.++..+++|+.|++ .+++++ ++.+.++||++||...+.+... ..
T Consensus 103 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~ 171 (277)
T 4dqx_A 103 DVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIF-LCSKYVIPVMRRNGGGSIINTTSYTATSAIAD----------RT 171 (277)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTTTCEEEEEECCGGGTSCCTT----------BH
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCcEEEEECchhhCcCCCC----------Ch
Confidence 99999999764422 23345678899999996 666665 4455679999999888765443 67
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcC-Cceee---c--cCcccCce
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKG-EKVEF---F--HDECRCPV 216 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~--~~~~~~~i 216 (300)
.|+.||.+++.+.+.++. ++.+++|+.+..+. ........ ..... . ......+.
T Consensus 172 ~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 238 (277)
T 4dqx_A 172 AYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPY-------------FTKIFAEAKDPAKLRSDFNARAVMDRMG 238 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-------------HHHHHHTCSCHHHHHHHHHTTSTTCSCB
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCch-------------hhhhcccccchhHHHHHHHhcCcccCCc
Confidence 999999999998887653 45678888876542 11111000 00000 1 12355788
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+++|+|+++++++...... ..++++++++|..++
T Consensus 239 ~pedvA~~v~~L~s~~~~~--itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 239 TAEEIAEAMLFLASDRSRF--ATGSILTVDGGSSIG 272 (277)
T ss_dssp CHHHHHHHHHHHHSGGGTT--CCSCEEEESSSSSSC
T ss_pred CHHHHHHHHHHHhCCccCC--CcCCEEEECCchhhh
Confidence 9999999999999764321 113389999987654
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=192.57 Aligned_cols=225 Identities=18% Similarity=0.203 Sum_probs=159.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+.+....+.+.++..+.++++|++|+++++.+++ .+++
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEG---AKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999 899999998666555554445667889999999998766554 4578
Q ss_pred CCEEEEcccccCcc----ccccChhhhhhcccccchHHHH----HhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWL----SSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+||||||..... ...+.++..+++|+.+++ .+. +.+++.+ ++||++||...+.+.+. .
T Consensus 81 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~----------~ 148 (253)
T 1hxh_A 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVF-IGCQQGIAAMKETG-GSIINMASVSSWLPIEQ----------Y 148 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTTC-EEEEEECCGGGTSCCTT----------B
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHH-HHHHHHHHHHHHcC-CEEEEEcchhhcCCCCC----------C
Confidence 99999999976432 123456778999999885 444 4455556 79999999888765433 6
Q ss_pred ChhHHHHHHHHHHHHHH---------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 149 NVYGKSKVAAEKFIYEK---------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~---------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
..|+.||.+.+.+.+.+ +.++.++||+.++++......+.... ...+.... .......+.+++
T Consensus 149 ~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~----~~~~~~~~----~~~p~~~~~~~~ 220 (253)
T 1hxh_A 149 AGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVS----KEMVLHDP----KLNRAGRAYMPE 220 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCC----HHHHBCBT----TTBTTCCEECHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhh----HHHHhhhh----ccCccCCCCCHH
Confidence 78999999999988765 45678899999988642100000000 00010100 011234688999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
|+|+++++++...... ..++++++.+|..
T Consensus 221 dvA~~~~~l~s~~~~~--~tG~~~~vdgG~~ 249 (253)
T 1hxh_A 221 RIAQLVLFLASDESSV--MSGSELHADNSIL 249 (253)
T ss_dssp HHHHHHHHHHSGGGTT--CCSCEEEESSSCT
T ss_pred HHHHHHHHHcCccccC--CCCcEEEECCCcc
Confidence 9999999999764321 1133899988753
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=193.25 Aligned_cols=221 Identities=15% Similarity=0.094 Sum_probs=158.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
++|++|||||+|+||++++++|+++| ++|++++|+.+....+...+ +..+.++++|++|+++++++++ .
T Consensus 1 ~~k~vlItGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARG---DRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQ 77 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999 89999999865554443322 4467789999999988776654 4
Q ss_pred cCCCCEEEEcccccCccc-------cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV-------CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~-------~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
++++|+||||||...... ..+.++..+++|+.+++ .+++.+ ++.+.++||++||...+.+...
T Consensus 78 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----- 151 (250)
T 2cfc_A 78 FGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIF-LGCRAVLPHMLLQGAGVIVNIASVASLVAFPG----- 151 (250)
T ss_dssp HSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-----
T ss_pred hCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhCCCCEEEEECChhhccCCCC-----
Confidence 578999999999764321 22346678899999986 554444 4457789999999887765432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|+.||.+.+.+++.++ .++.++||+.++++....... ...+..... .. .....+
T Consensus 152 -----~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~-~~-------~~~~~~ 215 (250)
T 2cfc_A 152 -----RSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLD---QPELRDQVL-AR-------IPQKEI 215 (250)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHT---SHHHHHHHH-TT-------CTTCSC
T ss_pred -----chhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccC---CHHHHHHHH-hc-------CCCCCC
Confidence 6789999999999887664 357889999999885321000 011222221 11 123468
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+++|+|+++++++..+... ..++++++.+|.
T Consensus 216 ~~~~dva~~~~~l~~~~~~~--~~G~~~~v~gG~ 247 (250)
T 2cfc_A 216 GTAAQVADAVMFLAGEDATY--VNGAALVMDGAY 247 (250)
T ss_dssp BCHHHHHHHHHHHHSTTCTT--CCSCEEEESTTG
T ss_pred cCHHHHHHHHHHHcCchhhc--ccCCEEEECCce
Confidence 89999999999999764221 113389998874
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=194.13 Aligned_cols=224 Identities=17% Similarity=0.119 Sum_probs=160.4
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++|++|||||+|+||++++++|+++| ++|++++|++++...+. .++ ++.++.+|++|+++++++.+.++++|+|
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~-~~~-~~~~~~~D~~~~~~~~~~~~~~~~id~l 78 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREG---AKVIATDINESKLQELE-KYP-GIQTRVLDVTKKKQIDQFANEVERLDVL 78 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHGGGG-GST-TEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHH-hcc-CceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence 356899999999999999999999999 89999999865554444 332 5777899999999999888888899999
Q ss_pred EEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCChhH
Q 022280 81 VNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYG 152 (300)
Q Consensus 81 ih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~ 152 (300)
|||||...... ..+.++..+++|+.+++ ++++++. +.+.++||++||...+.+.. .+...|+
T Consensus 79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------~~~~~Y~ 148 (246)
T 2ag5_A 79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMY-LMIKAFLPKMLAQKSGNIINMSSVASSVKGV---------VNRCVYS 148 (246)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCSBTTTBCC---------TTBHHHH
T ss_pred EECCccCCCCCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCceEEEEechHhCcCCC---------CCCccHH
Confidence 99999765321 23346678899999996 7777654 45677999999987765432 1267899
Q ss_pred HHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCC-CCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 153 KSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVP-KSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 153 ~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
.||.+.+.+.+.++ .++.++||+.++++....... ............ .. .....+.+++|+|++
T Consensus 149 ~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~dvA~~ 220 (246)
T 2ag5_A 149 TTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFL-KR-------QKTGRFATAEEIAML 220 (246)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHH-HT-------CTTSSCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHH-hc-------CCCCCCCCHHHHHHH
Confidence 99999999888764 367889999999864210000 000011111111 11 123468899999999
Q ss_pred HHHHHhccccccccccceeeecCCC
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++++...... ..++++++.+|.
T Consensus 221 v~~l~s~~~~~--~tG~~i~vdgG~ 243 (246)
T 2ag5_A 221 CVYLASDESAY--VTGNPVIIDGGW 243 (246)
T ss_dssp HHHHHSGGGTT--CCSCEEEECTTG
T ss_pred HHHHhCccccC--CCCCEEEECCCc
Confidence 99999754321 113389998874
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=202.14 Aligned_cols=224 Identities=16% Similarity=0.144 Sum_probs=160.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CC---ceeEEEeecCCchhHHHHHH---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PH---SFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~---~~~~~~~D~~~~~~~~~~~~--- 72 (300)
++|++|||||+|+||++++++|+++| ++|++++|+++......+.+ +. .+.++.+|++|+++++.+++
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 86 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAG---ASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVT 86 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 89999999866554443322 22 67788999999998766654
Q ss_pred -hcCCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
.++++|+||||||.... ..+.+.++..+++|+.|++ ++++++.. .+.++||++||...+.+...
T Consensus 87 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 160 (281)
T 3svt_A 87 AWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTM-YVLKHAAREMVRGGGGSFVGISSIAASNTHRW----- 160 (281)
T ss_dssp HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCEEEEEECCHHHHSCCTT-----
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEEeCHHHcCCCCC-----
Confidence 45799999999997321 1233456778999999996 77776554 44459999999888766543
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|+.||.+.+.+.+.++. ++.+++|+.+.++....... ...+..... . ......+
T Consensus 161 -----~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~---~~~~~~~~~-~-------~~p~~r~ 224 (281)
T 3svt_A 161 -----FGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITE---SAELSSDYA-M-------CTPLPRQ 224 (281)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT---CHHHHHHHH-H-------HCSSSSC
T ss_pred -----ChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhccc---CHHHHHHHH-h-------cCCCCCC
Confidence 67999999999999887653 45779999888763210000 001111111 1 1234578
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
.+++|+|+++++++...... ..+++|++++|..++
T Consensus 225 ~~~~dva~~~~~l~s~~~~~--itG~~~~vdgG~~~~ 259 (281)
T 3svt_A 225 GEVEDVANMAMFLLSDAASF--VTGQVINVDGGQMLR 259 (281)
T ss_dssp BCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGS
T ss_pred CCHHHHHHHHHHHhCcccCC--CCCCEEEeCCChhcc
Confidence 89999999999999764321 113399999987765
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=190.84 Aligned_cols=220 Identities=18% Similarity=0.144 Sum_probs=161.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||++++++|+++| ++|++++|+.+....+.+.+.....++++|++|+++++.+++ .++++
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 84 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERG---AKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGV 84 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 45799999999999999999999999 899999998766666655555567788999999998766654 46799
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|++|||||+..... +.+.++..+++|+.|++ .+++++. +.+.++||++||...+.+... ..
T Consensus 85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------~~ 153 (248)
T 3op4_A 85 DILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIF-RLSKAVLRGMMKKRQGRIINVGSVVGTMGNAG----------QA 153 (248)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT----------CH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCCEEEEEcchhhcCCCCC----------Ch
Confidence 99999999865422 33456788999999996 7777654 356679999999877655433 67
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.||.+.+.+.+.++. ++..++|+.+..+... ........... . ..+.+.+.+++|+|
T Consensus 154 ~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~-----~~~~~~~~~~~-~-------~~p~~r~~~p~dva 220 (248)
T 3op4_A 154 NYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTK-----ALNDEQRTATL-A-------QVPAGRLGDPREIA 220 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTT-----TSCHHHHHHHH-H-------TCTTCSCBCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhh-----hcCHHHHHHHH-h-------cCCCCCCcCHHHHH
Confidence 899999999988876643 4577899888765421 11111221111 1 12345788999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCc
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+++++++...... ..++++++.+|..
T Consensus 221 ~~v~~L~s~~~~~--itG~~i~vdgG~~ 246 (248)
T 3op4_A 221 SAVAFLASPEAAY--ITGETLHVNGGMY 246 (248)
T ss_dssp HHHHHHHSGGGTT--CCSCEEEESTTSS
T ss_pred HHHHHHcCCccCC--ccCcEEEECCCee
Confidence 9999999764321 1133899988753
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-26 Score=190.45 Aligned_cols=223 Identities=18% Similarity=0.154 Sum_probs=156.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+++. ....+.+. . .++++|++|+++++.+++ .++++
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~-~~~~~~~~-~-~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (256)
T 2d1y_A 5 AGKGVLVTGGARGIGRAIAQAFAREG---ALVALCDLRPEG-KEVAEAIG-G-AFFQVDLEDERERVRFVEEAAYALGRV 78 (256)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSTTH-HHHHHHHT-C-EEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChhH-HHHHHHhh-C-CEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 899999998766 44444433 3 668999999988766554 46789
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||...... ..+.++..+++|+.+++ ++++++. +.+.++||++||...+.+.+. ..
T Consensus 79 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------~~ 147 (256)
T 2d1y_A 79 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPM-HLSALAAREMRKVGGGAIVNVASVQGLFAEQE----------NA 147 (256)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHTTTCEEEEEECCGGGTSBCTT----------BH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEEccccccCCCCC----------Ch
Confidence 99999999764322 22345678999999996 7766654 356679999999877654332 67
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeec--cCcccCceeHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF--HDECRCPVYVRD 220 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~D 220 (300)
.|+.||.+.+.+.+.++. ++.+++|+.+..+.. ..++............. ..+.+++++++|
T Consensus 148 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 218 (256)
T 2d1y_A 148 AYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAV---------LEAIALSPDPERTRRDWEDLHALRRLGKPEE 218 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH---------HHHHC--------CHHHHTTSTTSSCBCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchh---------hhccccccCCHHHHHHHHhcCCCCCCcCHHH
Confidence 899999999998887643 456788887765321 00000000000000001 123467899999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+|++++++++..... ..+++|++++|...+
T Consensus 219 vA~~~~~l~s~~~~~--~~G~~~~v~gG~~~~ 248 (256)
T 2d1y_A 219 VAEAVLFLASEKASF--ITGAILPVDGGMTAS 248 (256)
T ss_dssp HHHHHHHHHSGGGTT--CCSCEEEESTTGGGB
T ss_pred HHHHHHHHhCchhcC--CCCCEEEECCCcccc
Confidence 999999999764211 113389999987554
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=194.72 Aligned_cols=224 Identities=16% Similarity=0.127 Sum_probs=157.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC-CCCchhhhhh---cCCCceeEEEeecCCchhHHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-STPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r-~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
|++|+||||||+|+||++++++|+++| ++|++++| +++....+.+ ..+..+.++.+|++|+++++.+++
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRG---ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999999 89999998 4333333322 224567789999999988766654
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhc---cCCeEEEeeccccc-cCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTEN---KENLLIHLSTDQVY-EGVKSFYKEEDE 144 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~---~~~~~v~~SS~~~~-~~~~~~~~E~~~ 144 (300)
.++++|+|||+||..... .+.+.++..+++|+.+++ ++++++.+. + ++||++||...+ .+...
T Consensus 96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~------- 166 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQF-FVAQQGLKHCRRG-GRIILTSSIAAVMTGIPN------- 166 (274)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHEEEE-EEEEEECCGGGTCCSCCS-------
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhC-CEEEEEcChHhccCCCCC-------
Confidence 457899999999976432 223345678999999996 887777653 4 699999998887 44322
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCC----CCCC---Cch-HHHHHHHHhcCCceeecc
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTIS----PVPK---SLP-IQWIDSVLSKGEKVEFFH 209 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~----~~~~---~~~-~~~~~~~~~~~~~~~~~~ 209 (300)
...|+.||.++|.+++.++ .++.++||+.++++.... ..+. ... ..+..... . +
T Consensus 167 ---~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~ 235 (274)
T 1ja9_A 167 ---HALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLA-N-------M 235 (274)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHH-H-------T
T ss_pred ---CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHH-h-------c
Confidence 6689999999999887653 467889999998753210 0000 111 11111111 1 1
Q ss_pred CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 210 DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+.+++++++|+|+++++++..+... ..+++||+++|.
T Consensus 236 ~~~~~~~~~~dva~~i~~l~~~~~~~--~~G~~~~v~gG~ 273 (274)
T 1ja9_A 236 NPLKRIGYPADIGRAVSALCQEESEW--INGQVIKLTGGG 273 (274)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTC
T ss_pred CCCCCccCHHHHHHHHHHHhCccccc--ccCcEEEecCCc
Confidence 23467999999999999999764321 113389998873
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=192.07 Aligned_cols=216 Identities=14% Similarity=0.097 Sum_probs=155.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||+++++.|+++| ++|++++|+.+......... .+.++.+|++|+++++.+++ .++++
T Consensus 26 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 100 (260)
T 3gem_A 26 SSAPILITGASQRVGLHCALRLLEHG---HRVIISYRTEHASVTELRQA--GAVALYGDFSCETGIMAFIDLLKTQTSSL 100 (260)
T ss_dssp -CCCEEESSTTSHHHHHHHHHHHHTT---CCEEEEESSCCHHHHHHHHH--TCEEEECCTTSHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHhc--CCeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 46789999999999999999999999 89999999876644333332 36778999999998766654 45789
Q ss_pred CEEEEcccccCccc---cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 78 DVVVNCAALSVPRV---CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 78 d~vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
|+||||||...... ..+.++..+++|+.|++ .+++++. +.+.++||++||...+.+... ...
T Consensus 101 D~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------~~~ 169 (260)
T 3gem_A 101 RAVVHNASEWLAETPGEEADNFTRMFSVHMLAPY-LINLHCEPLLTASEVADIVHISDDVTRKGSSK----------HIA 169 (260)
T ss_dssp SEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHH-HHHHHHHHHHHTSSSCEEEEECCGGGGTCCSS----------CHH
T ss_pred CEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcEEEEECChhhcCCCCC----------cHh
Confidence 99999999764432 22345678999999996 7766654 446679999999888766443 678
Q ss_pred hHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 151 YGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
|+.||.+.+.+.+.++. ++..++|+.+..+.... ..+..... . ......+..++|+|++
T Consensus 170 Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~-------~~~~~~~~-~-------~~p~~r~~~~edva~~ 234 (260)
T 3gem_A 170 YCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDD-------AAYRANAL-A-------KSALGIEPGAEVIYQS 234 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC------------------------------CCSCCCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCC-------HHHHHHHH-h-------cCCCCCCCCHHHHHHH
Confidence 99999999998877653 34678888887553210 01111111 1 1123456789999999
Q ss_pred HHHHHhccccccccccceeeecCCCccC
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
++++++.....|+ ++++++|..++
T Consensus 235 v~~L~~~~~itG~----~i~vdGG~~~~ 258 (260)
T 3gem_A 235 LRYLLDSTYVTGT----TLTVNGGRHVK 258 (260)
T ss_dssp HHHHHHCSSCCSC----EEEESTTTTTC
T ss_pred HHHHhhCCCCCCC----EEEECCCcccC
Confidence 9999976555555 99999987654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=193.05 Aligned_cols=217 Identities=16% Similarity=0.156 Sum_probs=158.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.+|+||||||+|+||++++++|+++| ++|++++|+ ++....+.+.+ +..+.++.+|++|+++++.+++ .
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAG---AKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAK 82 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999 899999998 66655443322 4567889999999998766655 4
Q ss_pred cCCCCEEEEcccc-cCcc----ccccChhhhhhcccccchHHHHHhhhh----cc--C---CeEEEeecccccc-CCCCC
Q 022280 74 FGQPDVVVNCAAL-SVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NK--E---NLLIHLSTDQVYE-GVKSF 138 (300)
Q Consensus 74 ~~~~d~vih~a~~-~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~--~---~~~v~~SS~~~~~-~~~~~ 138 (300)
++++|+||||||. .... ...+.++..+++|+.+++ ++++++.. .+ . ++||++||...+. +.+
T Consensus 83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-- 159 (258)
T 3afn_B 83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVV-MTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGP-- 159 (258)
T ss_dssp HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCT--
T ss_pred cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHH-HHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCC--
Confidence 5689999999997 3221 122345678899999996 77665542 23 2 6999999987765 322
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCc
Q 022280 139 YKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE 211 (300)
Q Consensus 139 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
+...|+.||.+.+.+++.++ .++.++||+.++++..... ...+..... .. ..
T Consensus 160 --------~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~-----~~~~~~~~~-~~-------~~ 218 (258)
T 3afn_B 160 --------GAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK-----TQDVRDRIS-NG-------IP 218 (258)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC-----CHHHHHHHH-TT-------CT
T ss_pred --------CchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc-----CHHHHHHHh-cc-------CC
Confidence 36789999999999887653 3578899999998753211 122332222 21 12
Q ss_pred ccCceeHHHHHHHHHHHHhcccc---ccccccceeeecCCC
Q 022280 212 CRCPVYVRDVVKIILALTNRWLS---EDKQMQLLLNVGGPD 249 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~i~ni~~~~ 249 (300)
.+++++++|+|+++++++..... .|+ +|++++|.
T Consensus 219 ~~~~~~~~dva~~~~~l~~~~~~~~~~G~----~~~v~gg~ 255 (258)
T 3afn_B 219 MGRFGTAEEMAPAFLFFASHLASGYITGQ----VLDINGGQ 255 (258)
T ss_dssp TCSCBCGGGTHHHHHHHHCHHHHTTCCSE----EEEESTTS
T ss_pred CCcCCCHHHHHHHHHHHhCcchhccccCC----EEeECCCc
Confidence 35789999999999999976432 334 89998875
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-26 Score=188.90 Aligned_cols=222 Identities=14% Similarity=0.091 Sum_probs=162.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+.+....+... .+..+.++.+|++|+++++++++.
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKG---ATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAE 79 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999 8999999986655544332 255788899999999987766653
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||..... .+.+.++..+++|+.+++ ++++.+. +.+.++||++||...+.+.+.
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 150 (247)
T 3lyl_A 80 NLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIF-RMSKECVRGMMKKRWGRIISIGSVVGSAGNPG-------- 150 (247)
T ss_dssp TCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT--------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCeEEEEEcchhhccCCCC--------
Confidence 56899999999987542 233456788999999996 7766654 355679999999887765443
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+.+.+.+.++. ++.+++|+.+..+.... ...... ..... ..+.+++.++
T Consensus 151 --~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-----~~~~~~-~~~~~-------~~~~~~~~~~ 215 (247)
T 3lyl_A 151 --QTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDK-----LTDEQK-SFIAT-------KIPSGQIGEP 215 (247)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTT-----SCHHHH-HHHHT-------TSTTCCCBCH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchh-----ccHHHH-HHHhh-------cCCCCCCcCH
Confidence 67899999999988876543 46779999887664321 111111 11111 1234578999
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
+|+|+++++++...... ..+++|++.+|..+
T Consensus 216 ~dva~~i~~l~s~~~~~--~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 216 KDIAAAVAFLASEEAKY--ITGQTLHVNGGMYM 246 (247)
T ss_dssp HHHHHHHHHHHSGGGTT--CCSCEEEESTTSSC
T ss_pred HHHHHHHHHHhCCCcCC--ccCCEEEECCCEec
Confidence 99999999999764321 11339999988654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=191.44 Aligned_cols=226 Identities=12% Similarity=0.119 Sum_probs=162.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+.+....+... .+..+.++.+|++|+++++++++ .
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEG---ARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEK 80 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999 8999999987665554433 34567889999999998766654 4
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh-----hccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT-----ENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+||||||..... .+.+.++..+++|+.+++ .+.+++. +.+.++||++||...+.+...
T Consensus 81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~-~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 152 (257)
T 3imf_A 81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTF-YCSQAIGKYWIEKGIKGNIINMVATYAWDAGPG------- 152 (257)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTCCCEEEEECCGGGGSCCTT-------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhhCCCcEEEEECchhhccCCCC-------
Confidence 57999999999975432 233456788999999996 7777763 334579999999887765443
Q ss_pred CCCCChhHHHHHHHHHHHHHHc--------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC--------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~--------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+.+.+.+.++ .++..++|+.+.++....... ....+..... . ......+.
T Consensus 153 ---~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~--~~~~~~~~~~-~-------~~p~~r~~ 219 (257)
T 3imf_A 153 ---VIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLW--ISEEMAKRTI-Q-------SVPLGRLG 219 (257)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC---------CCSHHHH-T-------TSTTCSCB
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcc--cCHHHHHHHH-h-------cCCCCCCc
Confidence 6789999999998876543 467789999998775321100 0000000110 1 11345688
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+++|+|+++++++...... ..++++++.+|..++
T Consensus 220 ~pedvA~~v~~L~s~~~~~--itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 220 TPEEIAGLAYYLCSDEAAY--INGTCMTMDGGQHLH 253 (257)
T ss_dssp CHHHHHHHHHHHHSGGGTT--CCSCEEEESTTTTSC
T ss_pred CHHHHHHHHHHHcCchhcC--ccCCEEEECCCcccC
Confidence 9999999999999764321 113389999987654
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=192.49 Aligned_cols=228 Identities=15% Similarity=0.078 Sum_probs=163.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+.+....+.+.+ +..+.++.+|++|+++++.+++ .+
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREG---AKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF 83 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT---CEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999 89999999876655554433 4567788999999998766654 46
Q ss_pred CCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccc-cCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVY-EGVKSFYKEEDE 144 (300)
Q Consensus 75 ~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~-~~~~~~~~E~~~ 144 (300)
+++|+||||||.... ..+.+.++..+++|+.|++ .+++++. +.+.++||++||...+ .+..
T Consensus 84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 154 (280)
T 3tox_A 84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAF-LAAKYQVPAIAALGGGSLTFTSSFVGHTAGFA-------- 154 (280)
T ss_dssp SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEEECCSBTTTBCCT--------
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCCEEEEEcChhhCcCCCC--------
Confidence 799999999997632 1233456788999999996 7766654 3456699999998876 3322
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
+...|+.||.+++.+.+.++. ++.+++|+.+..+......+.... ... ..+... .....+.+
T Consensus 155 --~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~-~~~-~~~~~~-------~p~~r~~~ 223 (280)
T 3tox_A 155 --GVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAP-ETR-GFVEGL-------HALKRIAR 223 (280)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCT-HHH-HHHHTT-------STTSSCBC
T ss_pred --CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCH-HHH-HHHhcc-------CccCCCcC
Confidence 267899999999998876643 467899999988753221111111 111 111111 12456889
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCccCHH
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRV 254 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~ 254 (300)
++|+|+++++++...... ..++++++++|..++..
T Consensus 224 pedvA~~v~~L~s~~a~~--itG~~i~vdGG~~~~~~ 258 (280)
T 3tox_A 224 PEEIAEAALYLASDGASF--VTGAALLADGGASVTKA 258 (280)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGCC-
T ss_pred HHHHHHHHHHHhCccccC--CcCcEEEECCCcccccc
Confidence 999999999999764321 11339999998766543
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-26 Score=188.91 Aligned_cols=219 Identities=16% Similarity=0.159 Sum_probs=145.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
++|++|||||+|+||++++++|+++| ++|+++ .|+++....+.+. .+..+.++.+|++|+++++.+++ .
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G---~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMG---ANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDA 80 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 899998 5665544433322 24567789999999998776654 4
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||..... .+.+.++..+++|+.+++ ++++++. +.+.++||++||...+.+.+
T Consensus 81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--------- 150 (247)
T 2hq1_A 81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAY-LCTKAVSKIMLKQKSGKIINITSIAGIIGNA--------- 150 (247)
T ss_dssp HSCCCEEEECC---------------CHHHHHHTHHHHH-HHHHHHHHHHHHHTCEEEEEECC-----------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEEcChhhccCCC---------
Confidence 57899999999976432 234467788999999986 6666654 35677999999975433222
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
+...|+.||.+.+.+++.++. ++.+++|+.+.++.... ....+.. .+... .....++++
T Consensus 151 -~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----~~~~~~~-~~~~~-------~~~~~~~~~ 216 (247)
T 2hq1_A 151 -GQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV-----LPDKVKE-MYLNN-------IPLKRFGTP 216 (247)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-----SCHHHHH-HHHTT-------STTSSCBCH
T ss_pred -CCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh-----cchHHHH-HHHhh-------CCCCCCCCH
Confidence 257899999999998877643 56778888876542110 1111111 11111 123468999
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+|+++++++...... ..+++||+++|.
T Consensus 217 ~dva~~~~~l~~~~~~~--~~G~~~~v~gG~ 245 (247)
T 2hq1_A 217 EEVANVVGFLASDDSNY--ITGQVINIDGGL 245 (247)
T ss_dssp HHHHHHHHHHHSGGGTT--CCSCEEEESTTC
T ss_pred HHHHHHHHHHcCccccc--ccCcEEEeCCCc
Confidence 99999999999764221 113389998875
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=190.18 Aligned_cols=226 Identities=15% Similarity=0.123 Sum_probs=156.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch-hhhhhcCCCceeEEEeecCCchhHHHHHH----hcC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-QLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFG 75 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~ 75 (300)
|.+|++|||||+|+||++++++|+++| ++|++++|+++.. .......+..+.++.+|++|+++++.+++ .++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAG---ANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFG 78 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999 8999999986511 11111224467778999999998766654 457
Q ss_pred CCCEEEEcccccCccc----cccChhhhhhcccccchHHHHH----hhhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLS----SFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|+||||||...... ..+.++..+++|+.+++ .+.+ .+++.+.++||++||...+.+.+.
T Consensus 79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 147 (255)
T 2q2v_A 79 GVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVF-HGTRLALPGMRARNWGRIINIASVHGLVGSTG---------- 147 (255)
T ss_dssp SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEEECCGGGTSCCTT----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEEcCchhccCCCC----------
Confidence 8999999999764321 23346778999999885 5444 445667789999999887765433
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCc----eee--ccCcccC
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK----VEF--FHDECRC 214 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~ 214 (300)
...|+.||.+.+.+.+.++. ++.++||+.++++.... .... ... . .... ..+ ...+.++
T Consensus 148 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----~~~~-~~~-~-~~~~~~~~~~~~~~~~p~~~ 219 (255)
T 2q2v_A 148 KAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQK-----QIDD-RAA-N-GGDPLQAQHDLLAEKQPSLA 219 (255)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHH-----HHHH-HHH-H-TCCHHHHHHHHHTTTCTTCC
T ss_pred chhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhh-----hccc-ccc-c-ccchHHHHHHHHhccCCCCC
Confidence 67899999999998886643 56789999998763210 0000 000 0 0000 000 1123457
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+++++|+|+++++++...... ..+++|++.+|..
T Consensus 220 ~~~~~dvA~~~~~l~s~~~~~--~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 220 FVTPEHLGELVLFLCSEAGSQ--VRGAAWNVDGGWL 253 (255)
T ss_dssp CBCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHhCCccCC--CCCCEEEECCCcc
Confidence 899999999999998764321 1133899988754
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=190.66 Aligned_cols=219 Identities=16% Similarity=0.152 Sum_probs=156.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC-CCCchhhhhhcC----CCceeEEEeecCCc----hhHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-STPLPQLLLDAL----PHSFVFFDVDLKSG----SGFDAVA 71 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r-~~~~~~~~~~~~----~~~~~~~~~D~~~~----~~~~~~~ 71 (300)
|++|++|||||+|+||+++++.|+++| ++|++++| +.+....+.+.+ +..+.++.+|++|. ++++.++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 85 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQG---FRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDII 85 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHH
Confidence 346789999999999999999999999 89999999 655444443332 45677899999999 7766555
Q ss_pred H----hcCCCCEEEEcccccCccc----cc-----------cChhhhhhcccccchHHHHHhhhh---ccC------CeE
Q 022280 72 L----KFGQPDVVVNCAALSVPRV----CE-----------NDPDSAMSINVPSSLVNWLSSFTE---NKE------NLL 123 (300)
Q Consensus 72 ~----~~~~~d~vih~a~~~~~~~----~~-----------~~~~~~~~~nv~~~~~~l~~~~~~---~~~------~~~ 123 (300)
+ .++++|+||||||...... .. +.++..+++|+.+++ ++++++.. .+. ++|
T Consensus 86 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~~~~g~i 164 (276)
T 1mxh_A 86 DCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPL-FLIRAFARRQGEGGAWRSRNLSV 164 (276)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHH-HHHHHHHHTC-------CCCEEE
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHH-HHHHHHHHHHhcCCCCCCCCcEE
Confidence 4 4678999999999764321 12 345678999999996 88887776 344 799
Q ss_pred EEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHH
Q 022280 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWID 196 (300)
Q Consensus 124 v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~ 196 (300)
|++||...+.+... ...|+.||.+++.+.+.++ .++.+++|+.+.++ .. ....+..
T Consensus 165 v~isS~~~~~~~~~----------~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~------~~~~~~~ 227 (276)
T 1mxh_A 165 VNLCDAMTDLPLPG----------FCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PA------MPQETQE 227 (276)
T ss_dssp EEECCGGGGSCCTT----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SS------SCHHHHH
T ss_pred EEECchhhcCCCCC----------CeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-cc------CCHHHHH
Confidence 99999888765433 6789999999999887654 35688999999988 21 1122222
Q ss_pred HHHhcCCceeeccCcccC-ceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 197 SVLSKGEKVEFFHDECRC-PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~-~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
... ... .... +.+++|+|+++++++...... ..+++|++.+|..
T Consensus 228 ~~~-~~~-------p~~r~~~~~~dva~~v~~l~s~~~~~--~tG~~~~vdgG~~ 272 (276)
T 1mxh_A 228 EYR-RKV-------PLGQSEASAAQIADAIAFLVSKDAGY--ITGTTLKVDGGLI 272 (276)
T ss_dssp HHH-TTC-------TTTSCCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGG
T ss_pred HHH-hcC-------CCCCCCCCHHHHHHHHHHHhCccccC--ccCcEEEECCchh
Confidence 222 111 1223 889999999999999753221 1133899988754
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=194.47 Aligned_cols=222 Identities=14% Similarity=0.085 Sum_probs=162.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||++++++|+++| ++|++++|+.+....+.+.++..+.++++|++|+++++.+++ .++++
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 104 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEG---CHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGV 104 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 899999998776666666666678889999999998666554 56799
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||..... .+.+.++..+++|+.|++ .+++++. +.+.++||++||...+.+... ..
T Consensus 105 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~----------~~ 173 (277)
T 3gvc_A 105 DKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAW-LCTKHAAPRMIERGGGAIVNLSSLAGQVAVGG----------TG 173 (277)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCEEEEEECCGGGTSCCTT----------BH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEEcchhhccCCCC----------ch
Confidence 9999999986532 234456788999999996 7766654 355679999999887655433 67
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC-ce--eec----cCcccCc
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE-KV--EFF----HDECRCP 215 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~----~~~~~~~ 215 (300)
.|+.||.+++.+.+.++. ++.+++|+.|.++.. ........ .. ... ......+
T Consensus 174 ~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~r~ 240 (277)
T 3gvc_A 174 AYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ-------------QTAMAMFDGALGAGGARSMIARLQGRM 240 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-------------HHHHTCC------CCHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH-------------HHhhhcchhhHHHHhhhhhhhccccCC
Confidence 899999999998886543 567899999886531 11110000 00 000 1123568
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
.+++|+|+++++++...... ..++++++++|...+
T Consensus 241 ~~pedvA~~v~~L~s~~a~~--itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 241 AAPEEMAGIVVFLLSDDASM--ITGTTQIADGGTIAA 275 (277)
T ss_dssp BCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGS
T ss_pred CCHHHHHHHHHHHcCCccCC--ccCcEEEECCcchhc
Confidence 89999999999999764321 123389999986554
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=192.78 Aligned_cols=228 Identities=14% Similarity=0.094 Sum_probs=156.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
+++++|||||+|+||++++++|+++| ++|++++|+.+....+.+.++..+.++.+|++|.++++++++ .++++
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 84 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGG---AKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKV 84 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999 899999999777776666667778889999999998666554 45789
Q ss_pred CEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhh----cc----CCeEEEeeccccccCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTE----NK----ENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 78 d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~----~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
|+||||||..... ...+.++..+++|+.+++ ++++++.. .+ .++||++||...+.+.+.
T Consensus 85 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------- 156 (261)
T 3n74_A 85 DILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVY-LMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPN------- 156 (261)
T ss_dssp CEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCTT-------
T ss_pred CEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCCC-------
Confidence 9999999976421 123445678999999986 66666543 22 347999999887765433
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+.+.+.+.++. ++..++|+.+..+....... .....+. .......+..++++
T Consensus 157 ---~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~ 224 (261)
T 3n74_A 157 ---LAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMG-EDSEEIR--------KKFRDSIPMGRLLK 224 (261)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------------CTTSSCCC
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcc-cCcHHHH--------HHHhhcCCcCCCcC
Confidence 66899999999999887654 45678888887654211000 0000000 00011124567899
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCccCHH
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRV 254 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~ 254 (300)
++|+|+++++++...... ..++++++.+|..++-.
T Consensus 225 ~~dva~~~~~l~s~~~~~--itG~~i~vdgG~~~~~~ 259 (261)
T 3n74_A 225 PDDLAEAAAFLCSPQASM--ITGVALDVDGGRSIGGR 259 (261)
T ss_dssp HHHHHHHHHHHTSGGGTT--CCSCEEEESTTTTC---
T ss_pred HHHHHHHHHHHcCCcccC--cCCcEEEecCCcccCCC
Confidence 999999999999653321 12349999998876543
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-26 Score=191.81 Aligned_cols=225 Identities=18% Similarity=0.157 Sum_probs=156.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+++......+. .+..+.++.+|++|+++++.+++ .+
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLG---ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999 8999999986554443322 24567788999999998776664 35
Q ss_pred -CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 -GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 -~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|+||||||..... ...+.++..+++|+.+++ ++++++. +.+.++||++||...+.+.+.
T Consensus 97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~-------- 167 (273)
T 1ae1_A 97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAY-HLSQIAYPLLKASQNGNVIFLSSIAGFSALPS-------- 167 (273)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTSEEEEEECCGGGTSCCTT--------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEEcCHhhcCCCCC--------
Confidence 7899999999976432 123346678899999996 7777663 456679999999988866433
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCC-chHHHHHHHHhcCCceeeccCcccCcee
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKS-LPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+.+.+.+.++ .++.+++|+.++++......... ....+..... .. .....+.+
T Consensus 168 --~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~-------~p~~r~~~ 237 (273)
T 1ae1_A 168 --VSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFI-VK-------TPMGRAGK 237 (273)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHH-HH-------STTCSCBC
T ss_pred --cchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHH-hc-------CCCCCCcC
Confidence 6789999999999887653 35788999999987532110000 0011111111 10 12346889
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++|+|+++++++...... ..++++++.+|..
T Consensus 238 p~dvA~~v~~l~s~~~~~--~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 238 PQEVSALIAFLCFPAASY--ITGQIIWADGGFT 268 (273)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhCccccC--cCCCEEEECCCcc
Confidence 999999999999753221 1133899988854
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-26 Score=191.15 Aligned_cols=220 Identities=15% Similarity=0.122 Sum_probs=158.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-Cchhhhh---hcCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLL---DALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
++|++|||||+|+||+++++.|+++| ++|++.+|+. +....+. ...+..+.++.+|++|.++++.+++ .
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~ 103 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAG---AKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER 103 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999 8999988853 3333322 2235577889999999998766554 4
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||..... .+.+.++..+++|+.|++ ++++++ ++.+.++||++||...+.+...
T Consensus 104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 174 (269)
T 4dmm_A 104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVF-LCSRAAAKIMLKQRSGRIINIASVVGEMGNPG-------- 174 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEECCHHHHHCCTT--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEECchhhcCCCCC--------
Confidence 67999999999987532 233456788999999996 777665 3456679999999887655433
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+++.+.+.++ .++.+++|+.|..+... ......+.. ......+.++
T Consensus 175 --~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~---------~~~~~~~~~-------~~p~~r~~~~ 236 (269)
T 4dmm_A 175 --QANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTS---------ELAAEKLLE-------VIPLGRYGEA 236 (269)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSC---------HHHHHHHGG-------GCTTSSCBCH
T ss_pred --chhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccc---------cccHHHHHh-------cCCCCCCCCH
Confidence 6789999999998887654 35678999998766421 111111111 1134568899
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+|+|+++++++..+... -..++++++++|..++
T Consensus 237 ~dvA~~v~~l~s~~~~~-~itG~~i~vdGG~~~s 269 (269)
T 4dmm_A 237 AEVAGVVRFLAADPAAA-YITGQVINIDGGLVMA 269 (269)
T ss_dssp HHHHHHHHHHHHCGGGG-GCCSCEEEESTTSCCC
T ss_pred HHHHHHHHHHhCCcccC-CCcCCEEEECCCeecC
Confidence 99999999999874322 0113389999986553
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=196.48 Aligned_cols=222 Identities=17% Similarity=0.138 Sum_probs=162.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---C-CceeEEEeecCCchhHHHHH----Hh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---P-HSFVFFDVDLKSGSGFDAVA----LK 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~----~~ 73 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+.+......+.+ + ..+.++++|++|++++++++ +.
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 116 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAG---ANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDA 116 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 89999999977665554433 2 46778999999998866654 45
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccc-cCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVY-EGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~-~~~~~~~~E~~~ 144 (300)
++++|+||||||...... +.+.++..+++|+.|++ ++++++ ++.+.++||++||...+ .+..
T Consensus 117 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~~-------- 187 (293)
T 3rih_A 117 FGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTV-YTVQACLAPLTASGRGRVILTSSITGPVTGYP-------- 187 (293)
T ss_dssp HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHTHHHHHHHSSCEEEEECCSBTTTBBCT--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCCEEEEEeChhhccCCCC--------
Confidence 689999999999865422 33456788999999996 887777 35677899999997753 3222
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
+...|+.||.+++.+.+.++ .++.+++|+.|+++..... ...+..... ... ....+..
T Consensus 188 --~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-----~~~~~~~~~-~~~-------p~~r~~~ 252 (293)
T 3rih_A 188 --GWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDM-----GEEYISGMA-RSI-------PMGMLGS 252 (293)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHT-----CHHHHHHHH-TTS-------TTSSCBC
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhc-----cHHHHHHHH-hcC-------CCCCCCC
Confidence 26789999999999888654 3568899999987642110 112222222 111 2345778
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
++|+|+++++++...... ..++++++.+|..++
T Consensus 253 p~dvA~~v~fL~s~~a~~--itG~~i~vdGG~~~~ 285 (293)
T 3rih_A 253 PVDIGHLAAFLATDEAGY--ITGQAIVVDGGQVLP 285 (293)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTTTCB
T ss_pred HHHHHHHHHHHhCccccC--CCCCEEEECCCccCC
Confidence 999999999999764221 123389999987553
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-26 Score=192.42 Aligned_cols=234 Identities=12% Similarity=0.108 Sum_probs=161.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC------------chhhhh---hcCCCceeEEEeecCCch
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP------------LPQLLL---DALPHSFVFFDVDLKSGS 65 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~------------~~~~~~---~~~~~~~~~~~~D~~~~~ 65 (300)
|.+|++|||||+|+||++++++|+++| ++|++++|+.+ ...... ...+..+.++++|++|++
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 87 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADG---ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRE 87 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 357899999999999999999999999 89999988721 122211 122567888999999999
Q ss_pred hHHHHHH----hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCC
Q 022280 66 GFDAVAL----KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVK 136 (300)
Q Consensus 66 ~~~~~~~----~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~ 136 (300)
+++.+++ .++++|+||||||+.......+.++..+++|+.|++ .+++++.. .+ .++||++||...+.+..
T Consensus 88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 166 (278)
T 3sx2_A 88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVY-HTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG 166 (278)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc
Confidence 8766654 467999999999987655455567889999999996 77777543 33 46999999987765431
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc
Q 022280 137 SFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH 209 (300)
Q Consensus 137 ~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
. +..+...|+.||.+++.+.+.++. ++..++|+.|.++.... .....+..............+
T Consensus 167 ~------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~~~~~~~~~ 236 (278)
T 3sx2_A 167 S------ADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINN----EFTREWLAKMAAATDTPGAMG 236 (278)
T ss_dssp C------SSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSS----HHHHHHHHHHHHHCC--CTTS
T ss_pred c------CCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchh----hhHHHHHhhccchhhhhhhhh
Confidence 1 111246899999999998886653 56789999998765321 111122222221122111222
Q ss_pred C-cccCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 210 D-ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 210 ~-~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
. ..+++++++|+|+++++++...... ..++++++++|..
T Consensus 237 ~~~p~~~~~p~dvA~~v~~l~s~~~~~--itG~~i~vdGG~~ 276 (278)
T 3sx2_A 237 NAMPVEVLAPEDVANAVAWLVSDQARY--ITGVTLPVDAGFL 276 (278)
T ss_dssp CSSSCSSBCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTTT
T ss_pred hhcCcCcCCHHHHHHHHHHHhCccccc--ccCCEEeECCCcc
Confidence 2 1267899999999999999764321 1133899988753
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=191.91 Aligned_cols=221 Identities=17% Similarity=0.156 Sum_probs=160.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---C-CceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---P-HSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+.+......+.+ + ..+.++++|++|+++++.+++ +
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAG---ANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEE 85 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 89999999866554443322 2 567889999999998766554 5
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccc-cCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVY-EGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~-~~~~~~~~E~~~ 144 (300)
++++|+||||||...... +.+.++..+++|+.+++ .+++++.. .+.++||++||.... .+.+
T Consensus 86 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~-------- 156 (262)
T 3pk0_A 86 FGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTF-YAVQACLDALIASGSGRVVLTSSITGPITGYP-------- 156 (262)
T ss_dssp HSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHSSCEEEEECCSBTTTBCCT--------
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEEechhhccCCCC--------
Confidence 679999999999865322 33456678999999996 77666554 477899999997753 3222
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
+...|+.||.+.+.+.+.++ .++.+++|+.+.++..... ...+..... .. .....+.+
T Consensus 157 --~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~-----~~~~~~~~~-~~-------~p~~r~~~ 221 (262)
T 3pk0_A 157 --GWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLEN-----GEEYIASMA-RS-------IPAGALGT 221 (262)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTT-----CHHHHHHHH-TT-------STTSSCBC
T ss_pred --CChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccccc-----CHHHHHHHH-hc-------CCCCCCcC
Confidence 26789999999999888754 3567899999987642111 112222222 11 12346789
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
++|+|+++++++...... ..++++++.+|..+
T Consensus 222 p~dva~~v~~L~s~~~~~--itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 222 PEDIGHLAAFLATKEAGY--ITGQAIAVDGGQVL 253 (262)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTTTC
T ss_pred HHHHHHHHHHHhCccccC--CcCCEEEECCCeec
Confidence 999999999999764321 11338999998754
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=189.74 Aligned_cols=228 Identities=14% Similarity=0.153 Sum_probs=158.4
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|++|++|||||+|+||+++++.|+++| ++|++++|+++....+.+.+ +..+.++.+|++|+++++++++
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 87 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEG---AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT 87 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 456899999999999999999999999 89999999865544433322 4567788999999998766654
Q ss_pred -hcCCCCEEEEcccccCc-c----ccccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccCCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP-R----VCENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
.++++|+||||||.... . .+.+.++..+++|+.|++ .+ ++.+++.+.++||++||...+.+...
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 161 (267)
T 1iy8_A 88 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVF-LGLEKVLKIMREQGSGMVVNTASVGGIRGIGN----- 161 (267)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEECCGGGTSBCSS-----
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCCEEEEEcchhhccCCCC-----
Confidence 46789999999997643 1 123456788999999985 44 44455567789999999887654332
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCC--C-CCCchHHHHHHHHhcCCceeeccCcc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISP--V-PKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.||.+.+.+.+.++ .++.+++|+.+.++..... . ............. .. ...
T Consensus 162 -----~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~-~~-------~p~ 228 (267)
T 1iy8_A 162 -----QSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFI-QV-------NPS 228 (267)
T ss_dssp -----BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHH-TT-------CTT
T ss_pred -----CccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHh-cc-------CCC
Confidence 6789999999999887653 4678899999986531100 0 0000000000111 11 123
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+.+.+++|+|+++++++...... ..++++++.+|...+
T Consensus 229 ~r~~~~~dvA~~v~~l~s~~~~~--~tG~~i~vdGG~~~~ 266 (267)
T 1iy8_A 229 KRYGEAPEIAAVVAFLLSDDASY--VNATVVPIDGGQSAA 266 (267)
T ss_dssp CSCBCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTTTTB
T ss_pred CCCcCHHHHHHHHHHHcCccccC--CCCCEEEECCCcccC
Confidence 56889999999999999764211 123389999886543
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=189.05 Aligned_cols=223 Identities=13% Similarity=0.067 Sum_probs=158.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCce-eEEEeecCCchhHHHHHHh---cCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSF-VFFDVDLKSGSGFDAVALK---FGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~---~~~~ 77 (300)
+++++|||||+|+||++++++|+++| ++|++++|+++....+.+.++..+ .++.+|++|.++++.+++. ++++
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i 86 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASG---ARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPV 86 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCC
Confidence 45789999999999999999999999 899999998665555444434455 7789999999988776654 4689
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||...... ..+.++..+++|+.+++ ++++++ ++.+.++||++||...+.+.+. .|..
T Consensus 87 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------~~~~ 157 (254)
T 2wsb_A 87 SILVNSAGIARLHDALETDDATWRQVMAVNVDGMF-WASRAFGRAMVARGAGAIVNLGSMSGTIVNRP--------QFAS 157 (254)
T ss_dssp CEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS--------SCBH
T ss_pred cEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEEecchhccCCCC--------Ccch
Confidence 99999999765422 22234678899999985 555544 4566789999999887755322 2347
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.||.+.+.+++.++ .++.++||+.++++..... .. ...+..... .. ...+++++++|+|
T Consensus 158 ~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~-~~--~~~~~~~~~-~~-------~~~~~~~~~~dva 226 (254)
T 2wsb_A 158 SYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKM-RE--RPELFETWL-DM-------TPMGRCGEPSEIA 226 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHH-HT--CHHHHHHHH-HT-------STTSSCBCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcc-cc--ChHHHHHHH-hc-------CCCCCCCCHHHHH
Confidence 89999999999887654 3568899999998642100 00 011122211 11 1235689999999
Q ss_pred HHHHHHHhccccccccccceeeecCCC
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++++++...... ..+.++++++|.
T Consensus 227 ~~~~~l~~~~~~~--~~G~~~~v~gG~ 251 (254)
T 2wsb_A 227 AAALFLASPAASY--VTGAILAVDGGY 251 (254)
T ss_dssp HHHHHHHSGGGTT--CCSCEEEESTTG
T ss_pred HHHHHHhCccccc--ccCCEEEECCCE
Confidence 9999999763211 113389998874
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=191.08 Aligned_cols=222 Identities=16% Similarity=0.142 Sum_probs=158.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC--CceeEEEeecCCchhHHHHHHh----c
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+++......+.+. ..+.++.+|++|+++++.+++. +
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEG---AKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999 899999998655544433322 4677899999999987766653 5
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHH----HHhhhhccC-CeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNW----LSSFTENKE-NLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|+||||||..... ...+.++..+++|+.+++ .+ ++.+++.+. ++||++||...+.+.+.
T Consensus 81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 151 (251)
T 1zk4_A 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVF-FGTRLGIQRMKNKGLGASIINMSSIEGFVGDPS-------- 151 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTT--------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHhcCCCCEEEEeCCchhccCCCC--------
Confidence 6899999999976432 122345678999999885 54 444555666 79999999888765433
Q ss_pred CCCChhHHHHHHHHHHHHHHc---------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 146 APVNVYGKSKVAAEKFIYEKC---------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~---------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+.+.+++.++ .++.++||+.++++.... .+ ........ . .....+.++
T Consensus 152 --~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~-~~----~~~~~~~~--~-----~~~~~~~~~ 217 (251)
T 1zk4_A 152 --LGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDD-LP----GAEEAMSQ--R-----TKTPMGHIG 217 (251)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHT-ST----THHHHHTS--T-----TTCTTSSCB
T ss_pred --CccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhh-cC----chhhhHHH--h-----hcCCCCCCc
Confidence 6789999999999887543 256889999998864221 11 01111100 0 011235689
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+++|+|+++++++...... ..+++|++.+|..
T Consensus 218 ~~~dva~~~~~l~~~~~~~--~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 218 EPNDIAYICVYLASNESKF--ATGSEFVVDGGYT 249 (251)
T ss_dssp CHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGG
T ss_pred CHHHHHHHHHHHcCccccc--ccCcEEEECCCcc
Confidence 9999999999999764321 1133899988754
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-26 Score=190.33 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=156.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
+++++|||||+|+||++++++|+++| ++|++++|+++....+.+. .+..+.++.+|++|+++++.+++ .
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASAG---STVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL 82 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 8999999986554443322 24567788999999998776665 3
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+|||+||..... ...+.++..+++|+.+++ ++++++ ++.+.++||++||...+.+.+.
T Consensus 83 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 153 (248)
T 2pnf_A 83 VDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTF-LVTQNSLRKMIKQRWGRIVNISSVVGFTGNVG-------- 153 (248)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHCHHHHHHTCEEEEEECCHHHHHCCTT--------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCcEEEEEccHHhcCCCCC--------
Confidence 57899999999976432 123345678999999996 665544 3456789999999866544322
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+.+.+.+.++ .++.++||+.++++.... ....+.. .+... .....++++
T Consensus 154 --~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~-----~~~~~~~-~~~~~-------~~~~~~~~~ 218 (248)
T 2pnf_A 154 --QVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAV-----LSEEIKQ-KYKEQ-------IPLGRFGSP 218 (248)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG-----SCHHHHH-HHHHT-------CTTSSCBCH
T ss_pred --CchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhh-----ccHHHHH-HHHhc-------CCCCCccCH
Confidence 5689999999999887653 356789999998875321 1111111 11111 123468999
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+|+++++++...... ..+++|++++|.
T Consensus 219 ~dva~~~~~l~~~~~~~--~~G~~~~v~gg~ 247 (248)
T 2pnf_A 219 EEVANVVLFLCSELASY--ITGEVIHVNGGM 247 (248)
T ss_dssp HHHHHHHHHHHSGGGTT--CCSCEEEESTTC
T ss_pred HHHHHHHHHHhCchhhc--CCCcEEEeCCCc
Confidence 99999999999763211 113489998863
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=191.27 Aligned_cols=219 Identities=14% Similarity=0.109 Sum_probs=155.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++|+||||||+|+||+++++.|+++| ++|++..|+++....+.+. .+..+.++.+|++|.++++++++ .+
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 119 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSV---SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 119 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTS---SEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999 8999988875544443332 24567788999999998777664 35
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+||||||..... ...+.++..+++|+.|++ ++++++. +.+.++||++||...+.+...
T Consensus 120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 189 (285)
T 2c07_A 120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLF-YITQPISKRMINNRYGRIINISSIVGLTGNVG--------- 189 (285)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT---------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhCCCCEEEEECChhhccCCCC---------
Confidence 7899999999976432 233356678999999985 6666654 456679999999877655433
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+.+.+++.++ .++.++||+.+.++.... ....+..... .. .....+++++
T Consensus 190 -~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----~~~~~~~~~~-~~-------~~~~~~~~~~ 255 (285)
T 2c07_A 190 -QANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK-----ISEQIKKNII-SN-------IPAGRMGTPE 255 (285)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------CCHHHHHHHH-TT-------CTTSSCBCHH
T ss_pred -CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhh-----cCHHHHHHHH-hh-------CCCCCCCCHH
Confidence 6789999999998887654 356889999998764321 1122222211 11 1234589999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|+|+++++++...... ..+.+|++++|.
T Consensus 256 dvA~~~~~l~~~~~~~--~~G~~i~v~gG~ 283 (285)
T 2c07_A 256 EVANLACFLSSDKSGY--INGRVFVIDGGL 283 (285)
T ss_dssp HHHHHHHHHHSGGGTT--CCSCEEEESTTS
T ss_pred HHHHHHHHHhCCCcCC--CCCCEEEeCCCc
Confidence 9999999999764321 113389998874
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-26 Score=191.20 Aligned_cols=231 Identities=14% Similarity=0.111 Sum_probs=160.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
++|++|||||+|+||++++++|+++| ++|++.+|+.+......+.+ ...+.++.+|+++.++++++++++++
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~ 85 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEG---ANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPK 85 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCC
Confidence 35799999999999999999999999 89999999866554433322 24566789999999999999999999
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|++|||||...... ..+.++..+++|+.+++ .+.++ +++.+.++||++||...+.+... .
T Consensus 86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~ 154 (267)
T 3t4x_A 86 VDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGV-RLTRSYLKKMIERKEGRVIFIASEAAIMPSQE----------M 154 (267)
T ss_dssp CSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTEEEEEEECCGGGTSCCTT----------C
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCCEEEEEcchhhccCCCc----------c
Confidence 999999999865432 23345677999999985 65554 44456679999999888765443 6
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCC------CCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTI------SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
..|+.||.+.+.+.+.++. ++..++|+.+..+... ...............+... ......+++
T Consensus 155 ~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~ 230 (267)
T 3t4x_A 155 AHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKEN----RPTSIIQRL 230 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHH----CTTCSSCSC
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhcc----CCcccccCc
Confidence 7999999999999987654 3456777777653100 0000000111111111000 011134678
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
.+++|+|+++++++...... ..++++++++|...+
T Consensus 231 ~~pedvA~~v~fL~s~~~~~--itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 231 IRPEEIAHLVTFLSSPLSSA--INGSALRIDGGLVRS 265 (267)
T ss_dssp BCTHHHHHHHHHHHSGGGTT--CCSCEEEESTTCSCS
T ss_pred cCHHHHHHHHHHHcCccccC--ccCCeEEECCCcccc
Confidence 99999999999999753221 113389999987654
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-26 Score=190.75 Aligned_cols=224 Identities=18% Similarity=0.154 Sum_probs=160.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
++|++|||||+|+||++++++|+++| ++|++. .|+.+......+ ..+..+.++.+|++|+++++++++ .
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G---~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENG---YNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDET 79 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 889886 777554444333 235577889999999998766654 4
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||..... ...+.++..+++|+.|++ ++++++ ++.+.++||++||...+.+...
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~-------- 150 (258)
T 3oid_A 80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALL-FCAQEAAKLMEKNGGGHIVSISSLGSIRYLEN-------- 150 (258)
T ss_dssp HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHTTTCEEEEEEEEGGGTSBCTT--------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEECchhhCCCCCC--------
Confidence 57999999999975432 223345678999999996 776666 4456679999999887765433
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+++.+.+.++. ++..++|+.+..+..... +. ...+..... . ....+++.++
T Consensus 151 --~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~--~~~~~~~~~-~-------~~p~~r~~~~ 217 (258)
T 3oid_A 151 --YTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHF-PN--REDLLEDAR-Q-------NTPAGRMVEI 217 (258)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGC-TT--HHHHHHHHH-H-------HCTTSSCBCH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhc-cc--CHHHHHHHH-h-------cCCCCCCcCH
Confidence 67999999999999887653 457789988876532111 00 111121111 1 1234578899
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+|+|+++++++...... ..++++++++|....
T Consensus 218 ~dva~~v~~L~s~~~~~--itG~~i~vdGG~~~~ 249 (258)
T 3oid_A 218 KDMVDTVEFLVSSKADM--IRGQTIIVDGGRSLL 249 (258)
T ss_dssp HHHHHHHHHHTSSTTTT--CCSCEEEESTTGGGB
T ss_pred HHHHHHHHHHhCcccCC--ccCCEEEECCCccCC
Confidence 99999999999764321 113389999987543
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=194.96 Aligned_cols=219 Identities=13% Similarity=0.135 Sum_probs=155.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||+++++.|+++| ++|++.+|+.+....+.+..+..+.++.+|++|+++++.+++ .++++
T Consensus 26 ~gk~vlVTGas~gIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 102 (266)
T 3grp_A 26 TGRKALVTGATGGIGEAIARCFHAQG---AIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGI 102 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 899999998776666666666778889999999998766654 45799
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||..... .+.+.++..+++|+.|++ .+.++ +++.+.++||++||...+.+... ..
T Consensus 103 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~----------~~ 171 (266)
T 3grp_A 103 DILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAAS-TLTRELIHSMMRRRYGRIINITSIVGVVGNPG----------QT 171 (266)
T ss_dssp CEEEECCCCC-----CCCHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCC-------C----------HH
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcEEEEECCHHHcCCCCC----------ch
Confidence 9999999986532 233456788999999975 55444 44566779999999877655433 67
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.||.+.+.+.+.++. ++.+++|+.+..+.... .......... .. .+.+.+.+++|+|
T Consensus 172 ~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~-----~~~~~~~~~~-~~-------~p~~r~~~~edvA 238 (266)
T 3grp_A 172 NYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDK-----LNEKQKEAIM-AM-------IPMKRMGIGEEIA 238 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHT-----CCHHHHHHHH-TT-------CTTCSCBCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhc-----cCHHHHHHHH-hc-------CCCCCCcCHHHHH
Confidence 899999999988876653 45778999887653211 1111121111 11 2345788999999
Q ss_pred HHHHHHHhccccccccccceeeecCCC
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++++++...... ..++++++++|.
T Consensus 239 ~~v~~L~s~~~~~--itG~~i~vdGG~ 263 (266)
T 3grp_A 239 FATVYLASDEAAY--LTGQTLHINGGM 263 (266)
T ss_dssp HHHHHHHSGGGTT--CCSCEEEESTTC
T ss_pred HHHHHHhCccccC--ccCCEEEECCCe
Confidence 9999999764321 113389998875
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=191.72 Aligned_cols=224 Identities=11% Similarity=0.085 Sum_probs=157.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-------------CCchhhhh---hcCCCceeEEEeecCCch
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-------------TPLPQLLL---DALPHSFVFFDVDLKSGS 65 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-------------~~~~~~~~---~~~~~~~~~~~~D~~~~~ 65 (300)
.+|++|||||+|+||++++++|+++| ++|++.+|+ .+....+. ...+..+.++.+|++|++
T Consensus 14 ~gk~~lVTGas~gIG~a~a~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 90 (280)
T 3pgx_A 14 QGRVAFITGAARGQGRSHAVRLAAEG---ADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDA 90 (280)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 46899999999999999999999999 899999884 22222222 223556778999999999
Q ss_pred hHHHHHH----hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hcc-CCeEEEeeccccc
Q 022280 66 GFDAVAL----KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENK-ENLLIHLSTDQVY 132 (300)
Q Consensus 66 ~~~~~~~----~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~ 132 (300)
+++++++ .++++|+||||||...... +.+.++..+++|+.|++ ++++++. +.+ .++||++||...+
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~~g~iv~isS~~~~ 169 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTW-RTLRATVPAMIEAGNGGSIVVVSSSAGL 169 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHCSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCCCEEEEEcchhhc
Confidence 8766654 4679999999999875432 33456678999999996 7777654 333 5689999998887
Q ss_pred cCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcC---
Q 022280 133 EGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKG--- 202 (300)
Q Consensus 133 ~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~--- 202 (300)
.+.+. ...|+.||.+++.+.+.++. ++..++|+.+.++.... ......+...
T Consensus 170 ~~~~~----------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--------~~~~~~~~~~~~~ 231 (280)
T 3pgx_A 170 KATPG----------NGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEP--------EAMMEIFARHPSF 231 (280)
T ss_dssp SCCTT----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCH--------HHHHHHHHHCGGG
T ss_pred cCCCC----------chhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccch--------hhhhhhhhcCchh
Confidence 65543 67899999999998886643 56789999998775321 1111111111
Q ss_pred -CceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 203 -EKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 203 -~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
..+.........+.+++|+|+++++++...... ..++++++++|.
T Consensus 232 ~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~--itG~~i~vdGG~ 277 (280)
T 3pgx_A 232 VHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGT--LTGTQIPVDKGA 277 (280)
T ss_dssp GGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGGTT--CSSCEEEESTTG
T ss_pred hhhhhhcccCCCCCCCHHHHHHHHHHHhCccccC--CCCCEEEECCCc
Confidence 111111222225899999999999999764321 113389998874
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=189.80 Aligned_cols=228 Identities=13% Similarity=0.075 Sum_probs=160.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CCCceeEEEeecCCchhHHHHHHh---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LPHSFVFFDVDLKSGSGFDAVALK--- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~--- 73 (300)
|++|+||||||+|+||++++++|+++| ++|++++|+.+......+. .+..+.++.+|++|.++++.+++.
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 88 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAG---ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA 88 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999 9999999976554332222 245678899999999987766653
Q ss_pred -cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCC
Q 022280 74 -FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 74 -~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
++++|+||||||...... ..+.++..+++|+.+++ ++++++.. .+ .++||++||...+.+... +..
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---~~~ 164 (265)
T 1h5q_A 89 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVF-NTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS---SLN 164 (265)
T ss_dssp HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE---ETT
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHH-HHHHHHHHHHHhcCCCceEEEeCCchhhccccc---ccc
Confidence 567999999999764321 23345678999999996 87777654 23 369999999877654321 112
Q ss_pred CCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
+..+...|+.||.+.+.+++.++ .++.++||+.++++..... ...+... +... .....+.
T Consensus 165 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-----~~~~~~~-~~~~-------~~~~~~~ 231 (265)
T 1h5q_A 165 GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM-----DKKIRDH-QASN-------IPLNRFA 231 (265)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS-----CHHHHHH-HHHT-------CTTSSCB
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc-----chhHHHH-HHhc-------CcccCCC
Confidence 33456789999999999887664 3578899999988743211 1111111 1111 1234688
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+++|+|+++++++...... ..+++|++.+|..
T Consensus 232 ~~~dva~~~~~l~~~~~~~--~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 232 QPEEMTGQAILLLSDHATY--MTGGEYFIDGGQL 263 (265)
T ss_dssp CGGGGHHHHHHHHSGGGTT--CCSCEEEECTTGG
T ss_pred CHHHHHHHHHhhccCchhc--CcCcEEEecCCEe
Confidence 9999999999999764311 1133899998854
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=189.40 Aligned_cols=229 Identities=12% Similarity=0.125 Sum_probs=156.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhcC----CCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDAL----PHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|++|++|||||+|+||+++++.|+++| ++|++++|+++. ...+.+.+ +..+.++.+|++|+++++.+++
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 78 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQG---ADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcC---CEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999 899999998665 44443332 4467778999999998766654
Q ss_pred -hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
.++++|+||||||..... ...+.++..+++|+.+++ ++++++. +.+.++||++||...+.+...
T Consensus 79 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 151 (260)
T 1x1t_A 79 RQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVF-HGTAAALPHMKKQGFGRIINIASAHGLVASAN------ 151 (260)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT------
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEECcHHhCcCCCC------
Confidence 467899999999976432 123456788999999996 7666654 456679999999887755432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHH-HHhcCCce-ee-c-cCcc
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDS-VLSKGEKV-EF-F-HDEC 212 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~-~~~~ 212 (300)
...|+.||.+++.+.+.++ .++.+++|+.+.++......+. .... ........ .+ . ....
T Consensus 152 ----~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~ 222 (260)
T 1x1t_A 152 ----KSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISA-----LAEKNGVDQETAARELLSEKQPS 222 (260)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-----------------------------CHHHHCTT
T ss_pred ----CchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhh-----hccccCCchHHHHHHHhhccCCC
Confidence 6789999999999887654 2567899999987643211000 0000 00000000 00 0 1134
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+.+.+++|+|+++++++...... ..+++|++++|..
T Consensus 223 ~~~~~p~dva~~~~~l~s~~~~~--~tG~~~~vdgG~~ 258 (260)
T 1x1t_A 223 LQFVTPEQLGGTAVFLASDAAAQ--ITGTTVSVDGGWT 258 (260)
T ss_dssp CCCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhChhhcC--CCCCEEEECCCcc
Confidence 57899999999999999753211 1234899988753
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=186.92 Aligned_cols=212 Identities=13% Similarity=0.169 Sum_probs=155.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH---hcCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL---KFGQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~~~~d 78 (300)
++|++|||||+|+||++++++|+++| ++|++++|+++ . ..+.++++|++|+++++++++ .++++|
T Consensus 1 ~~k~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~-~--------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d 68 (242)
T 1uay_A 1 MERSALVTGGASGLGRAAALALKARG---YRVVVLDLRRE-G--------EDLIYVEGDVTREEDVRRAVARAQEEAPLF 68 (242)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEESSCC-S--------SSSEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEccCcc-c--------cceEEEeCCCCCHHHHHHHHHHHHhhCCce
Confidence 36899999999999999999999999 89999999865 1 234678999999998777665 346899
Q ss_pred EEEEcccccCcccc----cc----ChhhhhhcccccchHHHHHhhhhc----c------CCeEEEeeccccccCCCCCCC
Q 022280 79 VVVNCAALSVPRVC----EN----DPDSAMSINVPSSLVNWLSSFTEN----K------ENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 79 ~vih~a~~~~~~~~----~~----~~~~~~~~nv~~~~~~l~~~~~~~----~------~~~~v~~SS~~~~~~~~~~~~ 140 (300)
+|||+||....... .+ .++..+++|+.+++ ++++++.+. + .++||++||...+.+...
T Consensus 69 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~--- 144 (242)
T 1uay_A 69 AVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTF-NVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIG--- 144 (242)
T ss_dssp EEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTT---
T ss_pred EEEEcccccCcccccccccccchHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCC---
Confidence 99999997643221 11 45778899999996 888777652 1 129999999988876433
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+.+.+++.++ .++.++||+.++++.... ....+. ..+....++ ..
T Consensus 145 -------~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~-----~~~~~~-~~~~~~~~~------~~ 205 (242)
T 1uay_A 145 -------QAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQG-----LPEKAK-ASLAAQVPF------PP 205 (242)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHT-----SCHHHH-HHHHTTCCS------SC
T ss_pred -------CchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhc-----cchhHH-HHHHhhCCC------cc
Confidence 6789999999999887653 356889999999875321 111222 222122211 14
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
.+++++|+|+++++++......|+ +|++.+|..++
T Consensus 206 ~~~~~~dva~~~~~l~~~~~~~G~----~~~v~gG~~~~ 240 (242)
T 1uay_A 206 RLGRPEEYAALVLHILENPMLNGE----VVRLDGALRMA 240 (242)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCSC----EEEESTTCCCC
T ss_pred cCCCHHHHHHHHHHHhcCCCCCCc----EEEEcCCeecC
Confidence 588999999999999987444444 89999987654
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=187.86 Aligned_cols=227 Identities=19% Similarity=0.153 Sum_probs=159.5
Q ss_pred CCCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCCC---chhhhhhcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTP---LPQLLLDALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|++|++|||||+ |+||+++++.|+++| ++|++++|+++ ....+....+ .+.++.+|++|+++++.+++
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~ 81 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAG---AEVALSYQAERLRPEAEKLAEALG-GALLFRADVTQDEELDALFAGVK 81 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHT---CEEEEEESCGGGHHHHHHHHHHTT-CCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHhcC-CcEEEECCCCCHHHHHHHHHHHH
Confidence 356899999999 999999999999999 89999999864 2222322223 36778999999998766554
Q ss_pred -hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
.++++|+||||||.... ..+.+.++..+++|+.+++ ++++++.+. +.++||++||...+.+.+.
T Consensus 82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 156 (261)
T 2wyu_A 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLV-AVARRAEPLLREGGGIVTLTYYASEKVVPK---- 156 (261)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHTTTEEEEEEEEEEECGGGTSBCTT----
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHhccCCEEEEEecccccCCCCC----
Confidence 45789999999997642 1233456788999999997 888888764 2259999999877654332
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+.+.+.+.++ .++.+++|+.++++.... .+ ....+..... .. .....
T Consensus 157 ------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~--~~~~~~~~~~-~~-------~p~~~ 219 (261)
T 2wyu_A 157 ------YNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARS-IP--GFTKMYDRVA-QT-------APLRR 219 (261)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGG-CT--THHHHHHHHH-HH-------STTSS
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhh-cc--ccHHHHHHHH-hc-------CCCCC
Confidence 5689999999999887653 467889999999874321 00 0112222111 11 12345
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHH
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e 255 (300)
+.+++|+|+++++++...... ..+.+|++++|..++..|
T Consensus 220 ~~~~~dva~~v~~l~s~~~~~--~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 220 NITQEEVGNLGLFLLSPLASG--ITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp CCCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGBC--
T ss_pred CCCHHHHHHHHHHHcChhhcC--CCCCEEEECCCccccCCC
Confidence 788999999999999753221 113389999987665444
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-26 Score=192.07 Aligned_cols=226 Identities=16% Similarity=0.127 Sum_probs=156.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++|++|||||+|+||+++++.|+++| ++|++++|+++....+.+.+ +..+.++.+|++|+++++.+++ .+
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEG---LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY 97 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999 89999999865544433322 4567788999999998766554 46
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhc------cCCeEEEeeccccccCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTEN------KENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
+++|+||||||..... ...+.++..+++|+.|++ ++++++... +.++||++||...+.+...
T Consensus 98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------- 169 (277)
T 2rhc_B 98 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVF-RVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVH------- 169 (277)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCTT-------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHhChhhHhhcCCeEEEEECccccccCCCC-------
Confidence 7899999999976432 123345778999999996 877775543 5679999999876654322
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhc--CCceeec--cCccc
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSK--GEKVEFF--HDECR 213 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~ 213 (300)
...|+.||.+.+.+.+.++. ++.+++|+.+.++.... ....+.. .... ....... ..+.+
T Consensus 170 ---~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~p~~ 240 (277)
T 2rhc_B 170 ---AAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAAS-----VREHYSD-IWEVSTEEAFDRITARVPIG 240 (277)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHH-----HHHHHHH-HHTCCHHHHHHHHHHHSTTS
T ss_pred ---CccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhh-----hhhhccc-ccccchHHHHHHHHhcCCCC
Confidence 67899999999998877642 56789999987653110 0000000 0000 0000000 12345
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++++++|+|+++++++...... ..+++|++++|.
T Consensus 241 r~~~~~dvA~~v~~l~s~~~~~--~tG~~~~vdGG~ 274 (277)
T 2rhc_B 241 RYVQPSEVAEMVAYLIGPGAAA--VTAQALNVCGGL 274 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCchhcC--CCCcEEEECCCc
Confidence 7899999999999999764211 113389998874
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-26 Score=194.63 Aligned_cols=229 Identities=15% Similarity=0.146 Sum_probs=158.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
+++++|||||+|+||++++++|+++| ++|++++|+.+......+.+ +..+.++.+|++|+++++.+++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKG---AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD 82 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999 89999999865443332222 2357778999999988776654
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchH---HHHHhhhhcc---CCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLV---NWLSSFTENK---ENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~---~l~~~~~~~~---~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
.++++|+||||||... .+.++..+++|+.+++. .+++.+++.+ .++||++||...+.+.+.
T Consensus 83 ~~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 149 (267)
T 2gdz_A 83 HFGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQ--------- 149 (267)
T ss_dssp HHSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTT---------
T ss_pred HcCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCCC---------
Confidence 4578999999999753 34678899999998741 3455555543 579999999888765433
Q ss_pred CCChhHHHHHHHHHHHHHH---------cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 147 PVNVYGKSKVAAEKFIYEK---------CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~---------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+++.+.+.+ +.++.+++|+.+.++.... .. ..............+. ...+...+++
T Consensus 150 -~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~-~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~ 223 (267)
T 2gdz_A 150 -QPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILES-IE---KEENMGQYIEYKDHIK-DMIKYYGILD 223 (267)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHG-GG---CHHHHGGGGGGHHHHH-HHHHHHCCBC
T ss_pred -CchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhc-cc---cccccchhhhHHHHHH-HHhccccCCC
Confidence 568999999999988763 2357889999887652110 00 0000000000000000 0001235789
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCccCHHHH
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQM 256 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~ 256 (300)
++|+|++++++++.....|+ +|++++++.+++.|+
T Consensus 224 ~~dvA~~v~~l~s~~~~~G~----~~~v~gg~~~~~~~~ 258 (267)
T 2gdz_A 224 PPLIANGLITLIEDDALNGA----IMKITTSKGIHFQDY 258 (267)
T ss_dssp HHHHHHHHHHHHHCTTCSSC----EEEEETTTEEEECCC
T ss_pred HHHHHHHHHHHhcCcCCCCc----EEEecCCCcccccCc
Confidence 99999999999987544444 899999888877664
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=184.65 Aligned_cols=224 Identities=14% Similarity=0.098 Sum_probs=147.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||++++++|+++| ++|++++|+.+.. .. .+.++.+|++|+++++.+++ .++++
T Consensus 6 ~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~-----~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 75 (250)
T 2fwm_X 6 SGKNVWVTGAGKGIGYATALAFVEAG---AKVTGFDQAFTQE-----QY--PFATEVMDVADAAQVAQVCQRLLAETERL 75 (250)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCCCSS-----CC--SSEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCchhhh-----cC--CceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 56899999999999999999999999 8999999986421 11 26678999999998766664 45789
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||..... .+.+.++..+++|+.+++ ++++++ ++.+.++||++||...+.+.+. ..
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------~~ 144 (250)
T 2fwm_X 76 DALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAF-NLFQQTMNQFRRQRGGAIVTVASDAAHTPRIG----------MS 144 (250)
T ss_dssp CEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEECCGGGTSCCTT----------CH
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHH-HHHHHHHHHHHhcCCCEEEEECchhhCCCCCC----------Cc
Confidence 9999999976432 133456788999999996 777766 4556789999999887755432 67
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.||.+.+.+.+.++ .++.++||+.++++....... ...+....+...............+.+++|+|
T Consensus 145 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA 221 (250)
T 2fwm_X 145 AYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV---SDDAEEQRIRGFGEQFKLGIPLGKIARPQEIA 221 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------------CHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc---ChhHHHHHHhhhhhcccccCCCCCCcCHHHHH
Confidence 89999999999887653 467889999999875321100 00000000000000000011234578999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCcc
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
+++++++...... ..++++++.+|..+
T Consensus 222 ~~v~~l~s~~~~~--~tG~~i~vdGG~~~ 248 (250)
T 2fwm_X 222 NTILFLASDLASH--ITLQDIVVDGGSTL 248 (250)
T ss_dssp HHHHHHHSGGGTT--CCSCEEEESTTTTT
T ss_pred HHHHHHhCccccC--CCCCEEEECCCccc
Confidence 9999999764221 12338999887543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-26 Score=194.59 Aligned_cols=224 Identities=12% Similarity=0.051 Sum_probs=160.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.+|++|||||+|+||++++++|+++| ++|++.+|+.+......+. .+..+.++.+|++|.++++++++ .+
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAG---ARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQG 101 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT---CEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999999 8999999986655544433 24567788999999998766654 45
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+||||||+..... +.+.++..+++|+.|++ .+++++. +.+.++||++||...+.+...
T Consensus 102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~~--------- 171 (271)
T 4ibo_A 102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAF-MIGREAAKRMIPRGYGKIVNIGSLTSELARAT--------- 171 (271)
T ss_dssp CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSBCTT---------
T ss_pred CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEEccHHhCCCCCC---------
Confidence 78999999999864322 33456788999999996 7755544 456679999999877655433
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+.+.+.+.++. ++..++|+.+..+....... ...+..... . ......+.+++
T Consensus 172 -~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~---~~~~~~~~~-~-------~~p~~r~~~pe 239 (271)
T 4ibo_A 172 -VAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALID---NPEFDAWVK-A-------RTPAKRWGKPQ 239 (271)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHH---CHHHHHHHH-H-------HSTTCSCBCGG
T ss_pred -chhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhccc---CHHHHHHHH-h-------cCCCCCCcCHH
Confidence 67899999999998887643 45778888887653210000 001111111 1 12345688999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
|+|+++++++...... ..++++++++|...+
T Consensus 240 dva~~v~~L~s~~~~~--itG~~i~vdGG~~~~ 270 (271)
T 4ibo_A 240 ELVGTAVFLSASASDY--VNGQIIYVDGGMLSV 270 (271)
T ss_dssp GGHHHHHHHHSGGGTT--CCSCEEEESTTGGGB
T ss_pred HHHHHHHHHhCccccC--CCCcEEEECCCeecc
Confidence 9999999998764321 123389999986544
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-26 Score=192.09 Aligned_cols=221 Identities=19% Similarity=0.187 Sum_probs=133.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|+++++|||||+|+||++++++|+++| ++|++++|+.+....+.+.+ +..+.++.+|++|+++++.+++ .
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREG---AAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999 89999999866555444332 5667889999999998766654 4
Q ss_pred cCCCCEEEEcccccCc-------cccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP-------RVCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~-------~~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
++++|+||||||.... ..+.+.++..+++|+.+++ .+.++ +++.+.++||++||...|..
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 154 (253)
T 3qiv_A 84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGAL-WCTRAVYKKMTKRGGGAIVNQSSTAAWLY-------- 154 (253)
T ss_dssp HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTCEEEEEECC--------------
T ss_pred cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCCEEEEECCccccCC--------
Confidence 5789999999997421 1233445678999999975 54444 44566779999999888732
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|+.||.+.+.+++.++. ++.+++|+.+.++......+ ..+..... . +.....+
T Consensus 155 -----~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~~~~~~~~-~-------~~~~~~~ 217 (253)
T 3qiv_A 155 -----SNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTP----KEMVDDIV-K-------GLPLSRM 217 (253)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-----------------------------------------
T ss_pred -----CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCc----HHHHHHHh-c-------cCCCCCC
Confidence 45799999999998876643 45779999998775322111 11111111 1 1123457
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
.+++|+|+++++++...... ..+++|++++|..++
T Consensus 218 ~~~~dva~~~~~l~s~~~~~--~tG~~~~vdgG~~~~ 252 (253)
T 3qiv_A 218 GTPDDLVGMCLFLLSDEASW--ITGQIFNVDGGQIIR 252 (253)
T ss_dssp --CCHHHHHHHHHHSGGGTT--CCSCEEEC-------
T ss_pred CCHHHHHHHHHHHcCccccC--CCCCEEEECCCeecC
Confidence 78999999999999764321 113399999987543
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=188.98 Aligned_cols=224 Identities=14% Similarity=0.042 Sum_probs=159.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHh----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+.+....+.+. .+..+.++++|++|.++++++++.
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 108 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAG---ADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKD 108 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHT---CEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999 8999999987665444322 245677899999999987766653
Q ss_pred cCCCCEEEEcccccCc------cccccChhhhhhcccccch---HHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP------RVCENDPDSAMSINVPSSL---VNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~------~~~~~~~~~~~~~nv~~~~---~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+|||+||.... ....+.++..+++|+.+++ ..+++.+++.+.++||++||...+.+. +
T Consensus 109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------~ 180 (279)
T 3ctm_A 109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN--------I 180 (279)
T ss_dssp HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC----------
T ss_pred hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC--------C
Confidence 5689999999997644 2223345678899999963 266677777778899999998765441 0
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
..+...|+.||.+.|.+++.++. ++.+++|+.+..+.... .......... .. .....++++
T Consensus 181 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~v~~v~Pg~v~t~~~~~-----~~~~~~~~~~-~~-------~p~~~~~~~ 247 (279)
T 3ctm_A 181 PQLQAPYNTAKAACTHLAKSLAIEWAPFARVNTISPGYIDTDITDF-----ASKDMKAKWW-QL-------TPLGREGLT 247 (279)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECSBSSTTTSS-----CCHHHHHHHH-HH-------STTCSCBCG
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcccCCEEEEeccCCccccccc-----cChHHHHHHH-Hh-------CCccCCcCH
Confidence 12367899999999999987643 45789999887664311 1112222111 10 123468899
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+|+|+++++++...... ..++++++++|..
T Consensus 248 ~dvA~~~~~l~s~~~~~--~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 248 QELVGGYLYLASNASTF--TTGSDVVIDGGYT 277 (279)
T ss_dssp GGTHHHHHHHHSGGGTT--CCSCEEEESTTCC
T ss_pred HHHHHHHHHHhCccccC--ccCCEEEECCCee
Confidence 99999999999764211 1233899988754
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=193.05 Aligned_cols=222 Identities=14% Similarity=0.118 Sum_probs=159.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.+|++|||||+|+||+++++.|+++| ++|++++|+.+....+... .+..+.++.+|++|.++++.+++ .+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGRAIALELARRG---AMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF 103 (270)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999 8999999986655444332 24567778999999988666554 56
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+||||||..... .+.+.++..+++|+.|++ ++++++. +.+.++||++||...+.+...
T Consensus 104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 173 (270)
T 3ftp_A 104 GALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVF-RLSRAVLRPMMKARGGRIVNITSVVGSAGNPG--------- 173 (270)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT---------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCCEEEEECchhhCCCCCC---------
Confidence 7999999999976542 233456788999999996 7777664 345679999999887755433
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+++.+.+.++. ++.+++|+.|..+.... ...... ..+... ...+.+.+++
T Consensus 174 -~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-----~~~~~~-~~~~~~-------~p~~r~~~pe 239 (270)
T 3ftp_A 174 -QVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKG-----LPQEQQ-TALKTQ-------IPLGRLGSPE 239 (270)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHH-----SCHHHH-HHHHTT-------CTTCSCBCHH
T ss_pred -chhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhh-----cCHHHH-HHHHhc-------CCCCCCCCHH
Confidence 67899999999988876643 45778888886542110 011111 111111 1345788999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
|+|+++++++...... ..++++++++|..+|
T Consensus 240 dvA~~v~~L~s~~~~~--itG~~i~vdGG~~~s 270 (270)
T 3ftp_A 240 DIAHAVAFLASPQAGY--ITGTTLHVNGGMFMS 270 (270)
T ss_dssp HHHHHHHHHHSGGGTT--CCSCEEEESTTSSCC
T ss_pred HHHHHHHHHhCCCcCC--ccCcEEEECCCcccC
Confidence 9999999999653221 113389999986543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-26 Score=191.42 Aligned_cols=223 Identities=17% Similarity=0.106 Sum_probs=158.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHH---hcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL---KFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~---~~~ 75 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+ +......+ ..+..+.++.+|++|.++++.+.+ .++
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g 105 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAG---AHVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATR 105 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESS-THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence 46899999999999999999999999 899999865 33333322 224567889999999998766543 457
Q ss_pred CCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|+||||||...... +.+.++..+++|+.|++ ++++++ ++.+.++||++||...+.+...
T Consensus 106 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~---------- 174 (273)
T 3uf0_A 106 RVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAW-VLSRSFGTAMLAHGSGRIVTIASMLSFQGGRN---------- 174 (273)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS----------
T ss_pred CCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCEEEEEcchHhcCCCCC----------
Confidence 8999999999875432 33456788999999996 777765 4456779999999888765543
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.||.+++.+.+.++. ++..++|+.|..+....... ......... . ....+.+.+++|
T Consensus 175 ~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~---~~~~~~~~~-~-------~~p~~r~~~ped 243 (273)
T 3uf0_A 175 VAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRA---DDERAAEIT-A-------RIPAGRWATPED 243 (273)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT---SHHHHHHHH-H-------HSTTSSCBCGGG
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhccc---CHHHHHHHH-h-------cCCCCCCCCHHH
Confidence 67899999999998887653 45779999988764210000 001111111 0 123457889999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+|+++++++...... ..++++++++|...|
T Consensus 244 va~~v~~L~s~~a~~--itG~~i~vdGG~~~s 273 (273)
T 3uf0_A 244 MVGPAVFLASDAASY--VHGQVLAVDGGWLAS 273 (273)
T ss_dssp GHHHHHHHHSGGGTT--CCSCEEEESTTGGGC
T ss_pred HHHHHHHHhCchhcC--CcCCEEEECcCccCC
Confidence 999999999763321 113389999986543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=191.72 Aligned_cols=222 Identities=16% Similarity=0.173 Sum_probs=160.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh----hhhhcCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ----LLLDALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+.+... ......+..+.++++|++|+++++++++ +
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEG---ANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999 89999999864322 2223335678889999999988666554 5
Q ss_pred cCCCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++++|+||||||..... .+.+.++..+++|+.|++ ++++++... ..++||++||...+.+...
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 192 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYF-HVTKAALSHLKQGDVIINTASIVAYEGNET--------- 192 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHH-HHHHHHHTTCCTTCEEEEECCTHHHHCCTT---------
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhhCCEEEEEechHhcCCCCC---------
Confidence 67999999999976432 134456788999999997 888888763 3459999999988766543
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+++.+.+.++ .++..++|+.|.++..... ....... .+ ......+.+.+++
T Consensus 193 -~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~----~~~~~~~-~~-------~~~~p~~r~~~p~ 259 (291)
T 3ijr_A 193 -LIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSS----FDEKKVS-QF-------GSNVPMQRPGQPY 259 (291)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHH----SCHHHHH-HT-------TTTSTTSSCBCGG
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCccccc----CCHHHHH-HH-------HccCCCCCCcCHH
Confidence 6789999999999887664 3567899999987531100 0001110 00 0012456789999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
|+|+++++++...... ..++++++.+|..+
T Consensus 260 dvA~~v~~L~s~~~~~--itG~~i~vdGG~~~ 289 (291)
T 3ijr_A 260 ELAPAYVYLASSDSSY--VTGQMIHVNGGVIV 289 (291)
T ss_dssp GTHHHHHHHHSGGGTT--CCSCEEEESSSCCC
T ss_pred HHHHHHHHHhCCccCC--CcCCEEEECCCccc
Confidence 9999999999764321 11338999888543
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=188.23 Aligned_cols=225 Identities=16% Similarity=0.149 Sum_probs=159.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
|+|++|||||+|+||++++++|+++|.. +.|++..|+.+....+.+.++..+.++.+|++|.++++.+++ .++++
T Consensus 1 Mgk~~lVTGas~GIG~aia~~l~~~g~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (254)
T 3kzv_A 1 MGKVILVTGVSRGIGKSIVDVLFSLDKD-TVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKI 79 (254)
T ss_dssp -CCEEEECSTTSHHHHHHHHHHHHHCSS-CEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCC-eEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCc
Confidence 3689999999999999999999998633 788888998766666665556678889999999998766554 46799
Q ss_pred CEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 78 d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
|++|||||.... ..+.+.++..+++|+.|++ .+++++ ++.+ ++||++||...+.+... .
T Consensus 80 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~m~~~~-g~iv~isS~~~~~~~~~----------~ 147 (254)
T 3kzv_A 80 DSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIV-SLVGIALPELKKTN-GNVVFVSSDACNMYFSS----------W 147 (254)
T ss_dssp CEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHT-CEEEEECCSCCCCSSCC----------S
T ss_pred cEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcC-CeEEEEcCchhccCCCC----------c
Confidence 999999998533 1233456788999999996 777776 4445 69999999887765433 6
Q ss_pred ChhHHHHHHHHHHHHHHcC-----CceeEeeeeeeCCCCCCCCC----CCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-----NFAILRSSIIYGPQTISPVP----KSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-----~~~ilR~~~v~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
..|+.||.+.+.+.+.++. ++..++|+.+..+....... ............ . ....+.+.+++
T Consensus 148 ~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~r~~~p~ 219 (254)
T 3kzv_A 148 GAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFR-G-------LKENNQLLDSS 219 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHH-H-------HHTTC----CH
T ss_pred chHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHH-H-------HHhcCCcCCcc
Confidence 7999999999999887653 56779999888764321111 011111111111 1 01244688999
Q ss_pred HHHHHHHHHHhccc---cccccccceeeecCCCcc
Q 022280 220 DVVKIILALTNRWL---SEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 220 D~a~~~~~~~~~~~---~~~~~~~~i~ni~~~~~~ 251 (300)
|+|+++++++.... ..|+ .+++++++..
T Consensus 220 dva~~v~~L~s~~~~~~itG~----~i~vdg~~~~ 250 (254)
T 3kzv_A 220 VPATVYAKLALHGIPDGVNGQ----YLSYNDPALA 250 (254)
T ss_dssp HHHHHHHHHHHHCCCGGGTTC----EEETTCGGGG
T ss_pred cHHHHHHHHHhhcccCCCCcc----EEEecCcccc
Confidence 99999999997642 2333 8888887643
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=187.22 Aligned_cols=219 Identities=15% Similarity=0.141 Sum_probs=155.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
+|+||||||+|+||++++++|+++| ++|+++ .|+++....+.+. .+..+.++.+|++|+++++.+++ .+
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G---~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAG---CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW 77 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999 899884 7765444433322 24567788999999998776665 45
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|+|||+||..... .+.+.++..+++|+.+++ ++++++.+ .+.++||++||...+.+...
T Consensus 78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~--------- 147 (244)
T 1edo_A 78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVF-LCTQAATKIMMKKRKGRIINIASVVGLIGNIG--------- 147 (244)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT---------
T ss_pred CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHhcCCCEEEEECChhhcCCCCC---------
Confidence 7899999999976532 123346678999999996 77777654 46779999999876544322
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+.+.+.+.++ .++.++||+.++++.... ....+..... .. ...+++++++
T Consensus 148 -~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----~~~~~~~~~~-~~-------~~~~~~~~~~ 213 (244)
T 1edo_A 148 -QANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK-----LGEDMEKKIL-GT-------IPLGRTGQPE 213 (244)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT-----TCHHHHHHHH-TS-------CTTCSCBCHH
T ss_pred -CccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhh-----cChHHHHHHh-hc-------CCCCCCCCHH
Confidence 6789999999998887653 256889999998764211 1111222111 11 1234689999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|+|+++++++..+... ...+++|++++|.
T Consensus 214 dva~~~~~l~~~~~~~-~~~G~~~~v~gG~ 242 (244)
T 1edo_A 214 NVAGLVEFLALSPAAS-YITGQAFTIDGGI 242 (244)
T ss_dssp HHHHHHHHHHHCSGGG-GCCSCEEEESTTT
T ss_pred HHHHHHHHHhCCCccC-CcCCCEEEeCCCc
Confidence 9999999998543221 1113389998874
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=188.38 Aligned_cols=221 Identities=12% Similarity=0.130 Sum_probs=161.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|.+|++|||||+|+||+++++.|+++| ++|++.+|+.+........++..+.++++|++|+++++.+++ .+++
T Consensus 4 l~gk~vlVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAARLAADG---ATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGG 80 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 467899999999999999999999999 899999998776666666666778889999999998766654 4578
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhcc-CCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENK-ENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+|+||||||...... +.+.++..+++|+.|++ ++.++ +++.+ .++||++||...+.+.+.
T Consensus 81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 149 (247)
T 3rwb_A 81 IDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTF-IVTRAGTDQMRAAGKAGRVISIASNTFFAGTPN---------- 149 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTT----------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCCcEEEEECchhhccCCCC----------
Confidence 999999999864422 33456788999999996 77666 55555 579999999887766543
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.||.+.+.+.+.++. ++..++|+.+..+.... .+......+. ... .....+.+++|
T Consensus 150 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~-~~~~~~~~~~-~~~----------~~~~r~~~ped 217 (247)
T 3rwb_A 150 MAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKA-SPHNEAFGFV-EML----------QAMKGKGQPEH 217 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-SGGGGGHHHH-HHH----------SSSCSCBCHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccc-cChhHHHHHH-hcc----------cccCCCcCHHH
Confidence 67999999999998876653 45778888887542111 0000000000 000 12345788999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+++.+++...... ..++++++.+|.
T Consensus 218 va~~v~~L~s~~~~~--itG~~i~vdGG~ 244 (247)
T 3rwb_A 218 IADVVSFLASDDARW--ITGQTLNVDAGM 244 (247)
T ss_dssp HHHHHHHHHSGGGTT--CCSCEEEESTTS
T ss_pred HHHHHHHHhCccccC--CCCCEEEECCCc
Confidence 999999999764321 113389998874
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=189.25 Aligned_cols=224 Identities=15% Similarity=0.148 Sum_probs=160.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+.+....+.+. .+..+.++++|++|+++++++++ .+
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQG---ADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999 8999999986655544433 25577889999999998766554 46
Q ss_pred CCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|++|||||.... ..+.+.++..+++|+.+++ ++++++.. .+ ++||++||...+.+...
T Consensus 87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~-------- 156 (264)
T 3ucx_A 87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGAL-RLIQGFTPALEESK-GAVVNVNSMVVRHSQAK-------- 156 (264)
T ss_dssp SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHTHHHHHHHT-CEEEEECCGGGGCCCTT--------
T ss_pred CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcC-CEEEEECcchhccCCCc--------
Confidence 799999999987522 1233456788999999996 77777653 33 69999999887765443
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh-cCCc----ee--eccCc
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLS-KGEK----VE--FFHDE 211 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~----~~--~~~~~ 211 (300)
...|+.||.+++.+.+.++. ++..++|+.|+++... .+...... .+.. .. .....
T Consensus 157 --~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p 225 (264)
T 3ucx_A 157 --YGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLK---------SYFEHQAGKYGTSVEDIYNAAAAGSD 225 (264)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHH---------HHHHHHHHHTTCCHHHHHHHHHTTSS
T ss_pred --cHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHH---------HHHHhhhhhcCCCHHHHHHHHhccCC
Confidence 67899999999998876543 5678999999875311 11110000 0000 00 01124
Q ss_pred ccCceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 212 CRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
.+++.+++|+|+++++++...... ..++++++++|...
T Consensus 226 ~~r~~~p~dvA~~v~~L~s~~~~~--itG~~i~vdGG~~~ 263 (264)
T 3ucx_A 226 LKRLPTEDEVASAILFMASDLASG--ITGQALDVNCGEYK 263 (264)
T ss_dssp SSSCCBHHHHHHHHHHHHSGGGTT--CCSCEEEESTTSSC
T ss_pred cccCCCHHHHHHHHHHHcCccccC--CCCCEEEECCCccC
Confidence 567899999999999999764321 12338999998643
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=187.91 Aligned_cols=224 Identities=10% Similarity=0.029 Sum_probs=155.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
++|++|||||+|+||++++++|+++| ++|++++|+++....+.+.+ +..+.++.+|++|+++++.+++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 6 QGKLAVVTAGSSGLGFASALELARNG---ARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999999 89999999865544443332 2267788999999998776665
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.++ +|+||||||..... ...+.++..+++|+.+++ .+.+++ ++.+.++||++||...+.+...
T Consensus 83 ~~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 153 (260)
T 2z1n_A 83 LGG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAV-WVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQD------- 153 (260)
T ss_dssp TTC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-------
T ss_pred hcC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEECchhhcCCCCC-------
Confidence 345 99999999975432 123356788999999985 555544 4567789999999988765433
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCC-----CchHHHHHHHHhcCCceeeccCcc
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPK-----SLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.||.+.+.+.+.++ .++.++||+.++++........ ..........+ ......
T Consensus 154 ---~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~p~ 223 (260)
T 2z1n_A 154 ---LALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSM-------ASRIPM 223 (260)
T ss_dssp ---BHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC------------------------------CCTT
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHH-------HhcCCC
Confidence 6789999999999887654 3568899999998753210000 00000000000 001134
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
..+.+++|+|+++++++...... ..++++++.+|.
T Consensus 224 ~r~~~~~dva~~v~~l~s~~~~~--~tG~~i~vdGG~ 258 (260)
T 2z1n_A 224 GRVGKPEELASVVAFLASEKASF--ITGAVIPVDGGA 258 (260)
T ss_dssp SSCCCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTT
T ss_pred CCccCHHHHHHHHHHHhCccccC--CCCCEEEeCCCc
Confidence 56889999999999999763221 113389998874
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=186.64 Aligned_cols=219 Identities=15% Similarity=0.122 Sum_probs=155.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~~ 77 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+.+..... ..+.+|++|.+++..++ +.++++
T Consensus 27 ~gk~vlVTGas~gIG~aia~~la~~G---~~V~~~~r~~~~~~~~--------~~~~~Dv~~~~~~~~~~~~~~~~~g~i 95 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGGAVVTALRAAG---ARVAVADRAVAGIAAD--------LHLPGDLREAAYADGLPGAVAAGLGRL 95 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT---CEEEECSSCCTTSCCS--------EECCCCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHhh--------hccCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999 8999999986543321 22578999988765554 456799
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||...... ..+.++..+++|+.|++ .+++++ ++.+.++||++||...+.+... ..
T Consensus 96 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------~~ 164 (266)
T 3uxy_A 96 DIVVNNAGVISRGRITETTDADWSLSLGVNVEAPF-RICRAAIPLMAAAGGGAIVNVASCWGLRPGPG----------HA 164 (266)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCSBTTBCCTT----------BH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEECCHHhCCCCCC----------Ch
Confidence 99999999875422 33456778899999996 777776 5566779999999887765433 67
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCC--CCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISP--VPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
.|+.||.+++.+.+.++. ++.+++|+.+.++..... .............. . ....+++.+++|
T Consensus 165 ~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~-~-------~~p~~r~~~ped 236 (266)
T 3uxy_A 165 LYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELG-R-------TVPLGRIAEPED 236 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHH-T-------TSTTSSCBCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHH-h-------cCCCCCCcCHHH
Confidence 899999999998886653 457799998876521000 00000001111111 1 123567899999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+|+++++++...... ..++++++.+|..++
T Consensus 237 vA~~v~~L~s~~~~~--itG~~i~vdGG~~~s 266 (266)
T 3uxy_A 237 IADVVLFLASDAARY--LCGSLVEVNGGKAVA 266 (266)
T ss_dssp HHHHHHHHHSGGGTT--CCSCEEEESTTCCCC
T ss_pred HHHHHHHHhCchhcC--CcCCEEEECcCEeCC
Confidence 999999999864321 113389999987653
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=185.03 Aligned_cols=220 Identities=15% Similarity=0.147 Sum_probs=155.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC-CCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-STPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r-~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
|++|++|||||+|+||++++++|+++| ++|++++| +++....+.+. .+..+.++.+|++|+++++.+++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQG---ANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVD 78 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999 89999988 54443333222 24567788999999998776655
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.++++|+||||||..... ...+.++..+++|+.+++ .+.++ +++.+.++||++||...+.+.+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 150 (246)
T 2uvd_A 79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVF-LCTKAVSRFMMRQRHGRIVNIASVVGVTGNPG------- 150 (246)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT-------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEECCHHhcCCCCC-------
Confidence 467899999999976432 223356778999999985 55554 44456789999999877654322
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+.+.+.+.++ .++.+++|+.+..+.... .+. ....... .. .....+++
T Consensus 151 ---~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~----~~~~~~~-~~-------~p~~~~~~ 214 (246)
T 2uvd_A 151 ---QANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDV-LDE----NIKAEML-KL-------IPAAQFGE 214 (246)
T ss_dssp ---BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSC-CCT----THHHHHH-HT-------CTTCSCBC
T ss_pred ---CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhh-cCH----HHHHHHH-hc-------CCCCCCcC
Confidence 6789999999998877653 356889999998764221 111 1111111 11 12346889
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++|+|+++++++...... ..++++++.+|.
T Consensus 215 ~~dvA~~~~~l~s~~~~~--~tG~~~~vdgG~ 244 (246)
T 2uvd_A 215 AQDIANAVTFFASDQSKY--ITGQTLNVDGGM 244 (246)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTS
T ss_pred HHHHHHHHHHHcCchhcC--CCCCEEEECcCc
Confidence 999999999999753211 113389998874
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=187.13 Aligned_cols=218 Identities=15% Similarity=0.136 Sum_probs=153.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhhc---CCCceeE-EEeecCCchhHHHHHH----h
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDA---LPHSFVF-FDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~~---~~~~~~~-~~~D~~~~~~~~~~~~----~ 73 (300)
||+||||||+|+||++++++|+++| ++|+++ .|+++....+.+. .+..+.. +.+|++|.++++++++ .
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G---~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDG---FALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEV 77 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 899988 7775544433322 2344555 8899999998776654 3
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+|||+||..... ...+.++..+++|+.+++ ++ ++.+++.+.++||++||...+.+.+.
T Consensus 78 ~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~-~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 148 (245)
T 2ph3_A 78 LGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVF-RTTREAVKLMMKARFGRIVNITSVVGILGNPG-------- 148 (245)
T ss_dssp HTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCTHHHHCCSS--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHH-HHHHHHHHHHHhcCCCEEEEEeChhhccCCCC--------
Confidence 57899999999976432 123345678999999974 44 44455567789999999876544322
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+.+.+.+.++ .+++++||+.++++.... ....+..... .. ...++++++
T Consensus 149 --~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----~~~~~~~~~~-~~-------~~~~~~~~~ 213 (245)
T 2ph3_A 149 --QANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTER-----LPQEVKEAYL-KQ-------IPAGRFGRP 213 (245)
T ss_dssp --BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-----SCHHHHHHHH-HT-------CTTCSCBCH
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhh-----cCHHHHHHHH-hc-------CCCCCCcCH
Confidence 6789999999998887653 356889999998764211 1112222211 11 123468999
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+|+++++++...... ..+++|++++|.
T Consensus 214 ~dva~~~~~l~~~~~~~--~~G~~~~v~gg~ 242 (245)
T 2ph3_A 214 EEVAEAVAFLVSEKAGY--ITGQTLCVDGGL 242 (245)
T ss_dssp HHHHHHHHHHTSGGGTT--CCSCEEEESTTC
T ss_pred HHHHHHHHHHhCccccc--ccCCEEEECCCC
Confidence 99999999999764211 113389998874
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=186.91 Aligned_cols=217 Identities=15% Similarity=0.104 Sum_probs=153.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+++. +..+.++++|++|+++++.+++ .+++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~--------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 74 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEG---SKVIDLSIHDPG--------EAKYDHIECDVTNPDQVKASIDHIFKEYGS 74 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESSCCC--------SCSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEecCccc--------CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 356899999999999999999999999 899999998654 2456778999999998766554 4678
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+||||||...... +.+.++..+++|+.|++ ++++++.. .+.++||++||...+.+... .
T Consensus 75 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~ 143 (264)
T 2dtx_A 75 ISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYY-YASKFAIPYMIRSRDPSIVNISSVQASIITKN----------A 143 (264)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTSSSCEEEEECCGGGTSCCTT----------B
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCcEEEEECCchhccCCCC----------c
Confidence 999999999764321 33456788999999986 76666543 45679999999888765433 6
Q ss_pred ChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcC-----Cceeec--cCcccCc
Q 022280 149 NVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKG-----EKVEFF--HDECRCP 215 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~ 215 (300)
..|+.||.+++.+.+.++. ++.+++|+.+.++... .+........ ...... ..+.+++
T Consensus 144 ~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 214 (264)
T 2dtx_A 144 SAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVR---------KAAELEVGSDPMRIEKKISEWGHEHPMQRI 214 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHH---------HHHHHHHCSCHHHHHHHHHHHHHHSTTSSC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchh---------hhhhcccccCchhhHHHHHHHHhcCCCCCC
Confidence 7899999999998887653 4567888887653210 0000000000 000000 1134568
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++++|+|+++++++...... ..++++++.+|..
T Consensus 215 ~~p~dvA~~v~~l~s~~~~~--~tG~~i~vdGG~~ 247 (264)
T 2dtx_A 215 GKPQEVASAVAFLASREASF--ITGTCLYVDGGLS 247 (264)
T ss_dssp BCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGG
T ss_pred cCHHHHHHHHHHHhCchhcC--CCCcEEEECCCcc
Confidence 99999999999999764211 1133899988753
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=188.77 Aligned_cols=223 Identities=14% Similarity=0.087 Sum_probs=156.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC-CCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-STPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r-~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.+|+||||||+|+||++++++|+++| ++|++++| +.+....+.+. .+..+.++.+|++|.+++.++++ .
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATEK---AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 89999999 54433333222 24567788999999988766554 4
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+||||||..... .+.+.++..+++|+.+++ ++++++.+ .+ .++||++||...+.+.+
T Consensus 83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------- 153 (261)
T 1gee_A 83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAF-LGSREAIKYFVENDIKGTVINMSSVHEKIPWP-------- 153 (261)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCCCEEEEECCGGGTSCCT--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCC--------
Confidence 57899999999976432 123345678999999996 66666543 34 57999999987765432
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
+...|+.||.+.+.+.+.++ .++.++||+.++++....... ...+..... .. ...+++++
T Consensus 154 --~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~-~~-------~~~~~~~~ 220 (261)
T 1gee_A 154 --LFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFA---DPEQRADVE-SM-------IPMGYIGE 220 (261)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHH---SHHHHHHHH-TT-------CTTSSCBC
T ss_pred --CccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhccc---ChhHHHHHH-hc-------CCCCCCcC
Confidence 36789999999998877653 357889999998874210000 011111111 11 12346899
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
++|+|+++++++...... ..++++++.+|..+
T Consensus 221 ~~dva~~~~~l~~~~~~~--~~G~~~~v~gg~~~ 252 (261)
T 1gee_A 221 PEEIAAVAAWLASSEASY--VTGITLFADGGMTL 252 (261)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGG
T ss_pred HHHHHHHHHHHhCccccC--CCCcEEEEcCCccc
Confidence 999999999999753211 11338999888643
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=187.16 Aligned_cols=225 Identities=13% Similarity=0.041 Sum_probs=157.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++|++|||||+|+||+++++.|+++| ++|++++|+.+......+. .+..+.++.+|++|.++++.+++ .+
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARG---IAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999 8999999986655544332 25567889999999998666554 46
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh------ccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE------NKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~------~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
+++|+||||||...... ..+.++..+++|+.|++ .+++++.. .+.++||++||...+.+...
T Consensus 100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~~------- 171 (279)
T 3sju_A 100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVF-RVTREVLRAGGMREAGWGRIVNIASTGGKQGVMY------- 171 (279)
T ss_dssp CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCTT-------
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHhchhhHhhcCCcEEEEECChhhccCCCC-------
Confidence 89999999999865322 23345678899999996 77776543 56679999999887765443
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCC------CCCCCchHHHHHHHHhcCCceeeccCc
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTIS------PVPKSLPIQWIDSVLSKGEKVEFFHDE 211 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
...|+.||.+++.+.+.++. ++..++|+.|..+.... ........... ..+.. ...
T Consensus 172 ---~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~p 240 (279)
T 3sju_A 172 ---AAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVH-ERFNA-------KIP 240 (279)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHH-HHHHT-------TCT
T ss_pred ---ChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHH-HHHHh-------cCC
Confidence 67899999999998886653 45678888886542100 00000011111 11111 113
Q ss_pred ccCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 212 CRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
.+.+.+++|+|+++++++...... ..++++++++|..
T Consensus 241 ~~r~~~pedvA~~v~~L~s~~a~~--itG~~i~vdGG~~ 277 (279)
T 3sju_A 241 LGRYSTPEEVAGLVGYLVTDAAAS--ITAQALNVCGGLG 277 (279)
T ss_dssp TSSCBCHHHHHHHHHHHTSSGGGG--CCSCEEEESTTCC
T ss_pred CCCCCCHHHHHHHHHHHhCccccC--cCCcEEEECCCcc
Confidence 457889999999999999764321 1133899988753
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=186.86 Aligned_cols=220 Identities=16% Similarity=0.103 Sum_probs=155.8
Q ss_pred CCCeEEEEcCCc-cchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTG-YLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG-~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
+++++|||||+| .||++++++|+++| ++|++++|+.+......+.+ +..+.++++|++|.++++.+++
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEG---ADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCC---CEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 568999999997 69999999999999 89999999866554443332 3578889999999998766654
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc-----cCCeEEEeeccccccCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN-----KENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~-----~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
.++++|+||||||...... ..+.++..+++|+.+++ ++++++... +.++||++||...+.+...
T Consensus 98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------ 170 (266)
T 3o38_A 98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVM-RATRAALRYFRGVDHGGVIVNNASVLGWRAQHS------ 170 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHTSSCCEEEEEECCGGGTCCCTT------
T ss_pred HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCCC------
Confidence 4578999999999765422 33346678999999996 777776542 4568999999887755433
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+.+.+++.++. ++..++|+.+..+....... ..+... .......+.+.
T Consensus 171 ----~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~~~~~~--------~~~~~~~~r~~ 234 (266)
T 3o38_A 171 ----QSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSS----SELLDR--------LASDEAFGRAA 234 (266)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-----------------------------CCTTSSCC
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCc----HHHHHH--------HHhcCCcCCCC
Confidence 67899999999999886543 45778998887653211000 001100 01112456789
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++|+|+++++++...... ..++++++++|.
T Consensus 235 ~~~dva~~i~~l~s~~~~~--~tG~~i~vdgG~ 265 (266)
T 3o38_A 235 EPWEVAATIAFLASDYSSY--MTGEVVSVSSQR 265 (266)
T ss_dssp CHHHHHHHHHHHHSGGGTT--CCSCEEEESSCC
T ss_pred CHHHHHHHHHHHcCccccC--ccCCEEEEcCCc
Confidence 9999999999999864321 123489998874
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=184.20 Aligned_cols=212 Identities=10% Similarity=0.111 Sum_probs=155.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-------eeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHH
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-------DVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-------~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~ 71 (300)
++|+||||||+|+||++++++|+++| + +|++.+|+++....+...+ +..+.++.+|++|+++++.++
T Consensus 1 ~~k~vlITGasggiG~~la~~l~~~G---~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (244)
T 2bd0_A 1 MKHILLITGAGKGIGRAIALEFARAA---RHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLT 77 (244)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHT---TTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHhc---CcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHH
Confidence 36789999999999999999999999 7 8999999865554443322 456778999999998877666
Q ss_pred H----hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCC
Q 022280 72 L----KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFY 139 (300)
Q Consensus 72 ~----~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~ 139 (300)
+ .++++|+||||||..... ...+.++..+++|+.+++ ++++++. +.+.++||++||...+.+...
T Consensus 78 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-- 154 (244)
T 2bd0_A 78 THIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTF-FLTQALFALMERQHSGHIFFITSVAATKAFRH-- 154 (244)
T ss_dssp HHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT--
T ss_pred HHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhCCCCEEEEEecchhcCCCCC--
Confidence 5 356899999999976432 123356778999999996 7777764 356679999999988765433
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.||.+++.+++.++ .++.++||+.++++..... +. .. .
T Consensus 155 --------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~--------------~~-------~ 204 (244)
T 2bd0_A 155 --------SSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV-DD--------------EM-------Q 204 (244)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC-CS--------------TT-------G
T ss_pred --------CchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhc-cc--------------cc-------c
Confidence 6789999999999886543 2578899999998753211 00 00 1
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
..+++++|+|+++++++..+... ..+.++...+++.+
T Consensus 205 ~~~~~~~dva~~~~~l~~~~~~~--~~g~~~~~~~~~~~ 241 (244)
T 2bd0_A 205 ALMMMPEDIAAPVVQAYLQPSRT--VVEEIILRPTSGDI 241 (244)
T ss_dssp GGSBCHHHHHHHHHHHHTSCTTE--EEEEEEEEETTCCC
T ss_pred ccCCCHHHHHHHHHHHHhCCccc--cchheEEecccccc
Confidence 25789999999999999864321 11225555554443
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=189.26 Aligned_cols=219 Identities=16% Similarity=0.192 Sum_probs=144.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhhh---cCCCceeEEEeecCCchhHHHHHH----hc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
+|++|||||+|+||+++++.|+++| ++|++++|+ .+......+ ..+..+.++++|++|+++++++++ .+
T Consensus 29 ~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 29 RPVAIVTGGRRGIGLGIARALAASG---FDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF 105 (280)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC---CeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999 899999864 333333322 235578889999999998666554 46
Q ss_pred CCCCEEEEcccccC--c----cccccChhhhhhcccccchHHHHHhhhh----cc---CCeEEEeeccccccCCCCCCCC
Q 022280 75 GQPDVVVNCAALSV--P----RVCENDPDSAMSINVPSSLVNWLSSFTE----NK---ENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 75 ~~~d~vih~a~~~~--~----~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~---~~~~v~~SS~~~~~~~~~~~~E 141 (300)
+++|+||||||... . ..+.+.++..+++|+.|++ .+++++.. .+ .++||++||...+.+...
T Consensus 106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~---- 180 (280)
T 4da9_A 106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTV-FFTQAVLKAMLASDARASRSIINITSVSAVMTSPE---- 180 (280)
T ss_dssp SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECCC-------C----
T ss_pred CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCC----
Confidence 79999999999832 1 1234456788999999996 76666543 23 459999999887655433
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+.+.+.+.++. ++..++|+.|..+..... ..... ..... ...+.+.
T Consensus 181 ------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-----~~~~~-~~~~~------~~~p~~r 242 (280)
T 4da9_A 181 ------RLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAV-----SGKYD-GLIES------GLVPMRR 242 (280)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------------C
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhc-----chhHH-HHHhh------cCCCcCC
Confidence 67899999999998876643 457799998876642110 00000 00000 0113456
Q ss_pred ceeHHHHHHHHHHHHhccc--cccccccceeeecCCCcc
Q 022280 215 PVYVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~~~ 251 (300)
+.+++|+|+++++++.... ..|+ ++++++|..+
T Consensus 243 ~~~pedvA~~v~~L~s~~~~~itG~----~i~vdGG~~~ 277 (280)
T 4da9_A 243 WGEPEDIGNIVAGLAGGQFGFATGS----VIQADGGLSI 277 (280)
T ss_dssp CBCHHHHHHHHHHHHTSTTGGGTTC----EEEESTTCC-
T ss_pred cCCHHHHHHHHHHHhCccccCCCCC----EEEECCCccc
Confidence 8899999999999997643 2344 8999998654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=187.16 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=158.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.++++|||||+|+||++++++|+++| ++|++++|+.+....+.+.+ +..+.++++|++|+++++.+++ .+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADG---VTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF 103 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999 89999999876655544432 4567789999999988666554 46
Q ss_pred CCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|++|||||+... ..+.+.++..+++|+.|++ .+++++ ++.+.++||++||...+.....
T Consensus 104 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~-------- 174 (283)
T 3v8b_A 104 GHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTF-LTLHLTVPYLKQRGGGAIVVVSSINGTRTFTT-------- 174 (283)
T ss_dssp SCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCSBTTTBCCS--------
T ss_pred CCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCceEEEEcChhhccCCCC--------
Confidence 799999999997532 1233456788999999996 777776 5566779999999876642111
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--Ccc--cC
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DEC--RC 214 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~ 214 (300)
.+...|+.||.+++.+.+.++. ++..++|+.+..+....... ... .. ......... ... ..
T Consensus 175 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~-~~-----~~~~~~~~~~~~p~~~~r 246 (283)
T 3v8b_A 175 PGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKL--RHE-EE-----TAIPVEWPKGQVPITDGQ 246 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTB--CCH-HH-----HSCCCBCTTCSCGGGTTC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCccccccc--ccc-hh-----hhhhhhhhhhcCccccCC
Confidence 1367899999999999887653 45779999987764321110 000 00 001111111 122 56
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+..++|+|+++++++...... ..++++++.+|.
T Consensus 247 ~~~pedvA~~v~fL~s~~a~~--itG~~i~vdGG~ 279 (283)
T 3v8b_A 247 PGRSEDVAELIRFLVSERARH--VTGSPVWIDGGQ 279 (283)
T ss_dssp CBCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTH
T ss_pred CCCHHHHHHHHHHHcCccccC--CcCCEEEECcCc
Confidence 889999999999999764321 113389998874
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=188.13 Aligned_cols=220 Identities=18% Similarity=0.147 Sum_probs=150.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHH----hc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
+++||||||+|+||++++++|+++| ++|++. .|+.+....+.+ ..+..+.++.+|++|.++++.+++ .+
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQG---WRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999 888776 555444333332 235678889999999998766654 45
Q ss_pred CCCCEEEEcccccCc-c----ccccChhhhhhcccccchHHHHHhhhhc-------cCCeEEEeeccccccCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVP-R----VCENDPDSAMSINVPSSLVNWLSSFTEN-------KENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 75 ~~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~-------~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
+++|+||||||.... . .+.+.++..+++|+.|++ .+++++... +.++||++||...+.+...
T Consensus 103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 176 (272)
T 4e3z_A 103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSI-LCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSAT----- 176 (272)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTT-----
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCC-----
Confidence 789999999998653 1 133456788999999996 777666542 3458999999877654321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
....|+.||.+++.+++.++. ++.+++|+.|.++...... ....... .........+
T Consensus 177 ----~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~----~~~~~~~--------~~~~~~~~~~ 240 (272)
T 4e3z_A 177 ----QYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGG----LPDRARE--------MAPSVPMQRA 240 (272)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC------------------------------CCTTSSC
T ss_pred ----CcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccC----ChHHHHH--------HhhcCCcCCC
Confidence 256799999999998876543 5678999999876432100 0011111 1111234567
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+++|+|+++++++...... ..+++|++++|.
T Consensus 241 ~~~edvA~~i~~l~s~~~~~--~tG~~i~vdgG~ 272 (272)
T 4e3z_A 241 GMPEEVADAILYLLSPSASY--VTGSILNVSGGR 272 (272)
T ss_dssp BCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTC
T ss_pred cCHHHHHHHHHHHhCCcccc--ccCCEEeecCCC
Confidence 88999999999999764321 113389998873
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=188.25 Aligned_cols=221 Identities=16% Similarity=0.103 Sum_probs=154.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC--CceeEEEeecCCchhHHHHHH----hcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLKSGSGFDAVAL----KFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~----~~~ 75 (300)
++|++|||||+|+||++++++|+++| ++|++++|+++......+.+. ..+.++.+|++|+++++++++ .++
T Consensus 28 ~~k~vlVTGas~gIG~aia~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (276)
T 2b4q_A 28 AGRIALVTGGSRGIGQMIAQGLLEAG---ARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSA 104 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999999 899999998655544433321 256778899999988766654 457
Q ss_pred CCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccC----CeEEEeeccccccCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKE----NLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 76 ~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~----~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
++|+||||||..... ...+.++..+++|+.+++ ++++++. +.+. ++||++||...+.+...
T Consensus 105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~~------ 177 (276)
T 2b4q_A 105 RLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVF-SCIQQLLPLLRRSASAENPARVINIGSVAGISAMGE------ 177 (276)
T ss_dssp CCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHH-HHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCCC------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCCC------
Confidence 899999999976432 223346788999999996 6666543 3444 79999999887755432
Q ss_pred CCCCCC-hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 144 EIAPVN-VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 144 ~~~p~~-~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
.. .|+.||.+++.+.+.++. ++.+++|+.+..+.... .......... .. .....+.+
T Consensus 178 ----~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-----~~~~~~~~~~-~~-----~~~p~~r~ 242 (276)
T 2b4q_A 178 ----QAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRH-----IANDPQALEA-DS-----ASIPMGRW 242 (276)
T ss_dssp ----SCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHH-----HHHCHHHHHH-HH-----HTSTTSSC
T ss_pred ----CccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhh-----cchhHHHHHH-hh-----cCCCCCCc
Confidence 44 899999999998887643 46789998887653210 0000011111 10 01123468
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+++|+|+++++++...... ..++++++.+|.
T Consensus 243 ~~p~dvA~~v~~l~s~~~~~--~tG~~i~vdGG~ 274 (276)
T 2b4q_A 243 GRPEEMAALAISLAGTAGAY--MTGNVIPIDGGF 274 (276)
T ss_dssp CCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTT
T ss_pred CCHHHHHHHHHHHhCccccC--CCCCEEEeCCCc
Confidence 89999999999999764211 123389998874
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-26 Score=192.97 Aligned_cols=227 Identities=14% Similarity=0.171 Sum_probs=161.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CCCceeEEEeecCCchhHHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+.+........ .+..+.++++|++|.++++.+++
T Consensus 25 l~~k~~lVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 25 LRDKVAFITGGGSGIGFRIAEIFMRHG---CHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK 101 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999 8999999986554443332 25567889999999988666554
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.++++|+||||||..... .+.+.++..+++|+.|++ ++.+++. +.+.++||++||...+.+...
T Consensus 102 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 173 (277)
T 4fc7_A 102 EFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTF-NVSRVLYEKFFRDHGGVIVNITATLGNRGQAL------- 173 (277)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHTHHHHCEEEEEECCSHHHHTCTT-------
T ss_pred HcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCCEEEEECchhhCCCCCC-------
Confidence 467999999999965432 233456788999999996 7777663 345679999999887765443
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+++.+.+.++. ++..++|+.|.++........ ......... . ......+.+
T Consensus 174 ---~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~--~~~~~~~~~-~-------~~p~~r~~~ 240 (277)
T 4fc7_A 174 ---QVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGG--PQASLSTKV-T-------ASPLQRLGN 240 (277)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSC--CHHHHHHHH-H-------TSTTSSCBC
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccC--CHHHHHHHh-c-------cCCCCCCcC
Confidence 67899999999998886643 457799998886531000000 011111111 1 123456889
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCccCH
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSR 253 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~ 253 (300)
++|+|+++++++...... ..++++++++|..+++
T Consensus 241 p~dvA~~v~fL~s~~~~~--itG~~i~vdGG~~~~~ 274 (277)
T 4fc7_A 241 KTEIAHSVLYLASPLASY--VTGAVLVADGGAWLTF 274 (277)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTHHHHC
T ss_pred HHHHHHHHHHHcCCccCC--cCCCEEEECCCcccCC
Confidence 999999999999753221 1233899999876554
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=189.93 Aligned_cols=221 Identities=16% Similarity=0.140 Sum_probs=159.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC--chh---hhhhcCCCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP--LPQ---LLLDALPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~--~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
++|++|||||+|+||++++++|+++| ++|++.+|+.+ ... ......+..+.++.+|++|.++++.+++
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREG---ADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999 89999888732 122 2223345677888999999998666554
Q ss_pred hcCCCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhhccC--CeEEEeeccccccCCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTENKE--NLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
.++++|+||||||..... .+.+.++..+++|+.|++ ++++++...-. ++||++||...+.+...
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~-------- 195 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALF-WITQEAIPLLPKGASIITTSSIQAYQPSPH-------- 195 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHH-HHHHHHGGGCCTTCEEEEECCGGGTSCCTT--------
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHhhcCCEEEEECChhhccCCCC--------
Confidence 468999999999975421 233456788999999997 88888876432 49999999998876544
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCce
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPV 216 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i 216 (300)
...|+.||.+++.+.+.++ .++..++|+.|.++....... ......... .....+.
T Consensus 196 --~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~-------------~~~~~~~~~~~~p~~r~~ 260 (294)
T 3r3s_A 196 --LLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ-------------TQDKIPQFGQQTPMKRAG 260 (294)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTS-------------CGGGSTTTTTTSTTSSCB
T ss_pred --chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCC-------------CHHHHHHHHhcCCCCCCc
Confidence 6789999999999887654 356789999998753100000 000000011 2346788
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
+++|+|+++++++...... ..++++++++|..+
T Consensus 261 ~p~dvA~~v~~L~s~~~~~--itG~~i~vdGG~~l 293 (294)
T 3r3s_A 261 QPAELAPVYVYLASQESSY--VTAEVHGVCGGEHL 293 (294)
T ss_dssp CGGGGHHHHHHHHSGGGTT--CCSCEEEESTTCCC
T ss_pred CHHHHHHHHHHHhCccccC--CCCCEEEECCCccC
Confidence 9999999999999764321 11339999998654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=186.08 Aligned_cols=222 Identities=15% Similarity=0.087 Sum_probs=157.1
Q ss_pred CCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCCC---chhhhhhcCCCceeEEEeecCCchhHHHHHH----h
Q 022280 3 KKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTP---LPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 3 ~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
+|++|||||+ |+||+++++.|+++| ++|++++|+.. ....+....+ ...++++|++|+++++.+++ .
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREG---AELAFTYQNDKLKGRVEEFAAQLG-SDIVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTT---CEEEEEESSTTTHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCC---CEEEEEcCcHHHHHHHHHHHHhcC-CcEEEEccCCCHHHHHHHHHHHHHH
Confidence 4789999999 999999999999999 89999999862 1222222222 24678999999998776665 3
Q ss_pred cCCCCEEEEcccccCc-----c----ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP-----R----VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~-----~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
++++|+||||||.... . .+.+.++..+++|+.+++ ++++++... +.++||++||...+.+.+.
T Consensus 85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 158 (265)
T 1qsg_A 85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFV-AMAKACRSMLNPGSALLTLSYLGAERAIPN----- 158 (265)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHH-HHHHHHGGGEEEEEEEEEEECGGGTSBCTT-----
T ss_pred cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHhccCCEEEEEcchhhccCCCC-----
Confidence 5689999999997642 1 233456788999999997 888888763 2259999999877655433
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|+.||.+.+.+.+.++ .++.+++|+.+.++.... .+ ....+..... .. .....+
T Consensus 159 -----~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-~~--~~~~~~~~~~-~~-------~p~~~~ 222 (265)
T 1qsg_A 159 -----YNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASG-IK--DFRKMLAHCE-AV-------TPIRRT 222 (265)
T ss_dssp -----TTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGG-ST--THHHHHHHHH-HH-------STTSSC
T ss_pred -----chHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhc-cc--ccHHHHHHHH-hc-------CCCCCC
Confidence 6789999999999887654 256789999998875321 10 1112222211 11 122357
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
.+++|+|+++++++...... ..+++|++++|..++
T Consensus 223 ~~~~dva~~v~~l~s~~~~~--~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 223 VTIEDVGNSAAFLCSDLSAG--ISGEVVHVDGGFSIA 257 (265)
T ss_dssp CCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTGGGB
T ss_pred CCHHHHHHHHHHHhCchhcC--ccCCEEEECCCcCCC
Confidence 89999999999999753321 113389999987654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=188.11 Aligned_cols=223 Identities=14% Similarity=0.090 Sum_probs=158.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.+|++|||||+|+||+++++.|+++| ++|++++|+.+......+. .+..+.++++|++|+++++.+++ .
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 95 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAG---ARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEA 95 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 8999999986655444332 35678889999999998666554 5
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+||||||...... +.+.++..+++|+.+++ .+++++.. .+ .++||++||...+.+...
T Consensus 96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 167 (266)
T 4egf_A 96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPA-LLASAVGKAMVAAGEGGAIITVASAAALAPLPD------- 167 (266)
T ss_dssp HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTT-------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCeEEEEEcchhhccCCCC-------
Confidence 679999999999865432 23346678999999996 77666543 33 459999999888765443
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+.+.+.+.++. ++..++|+.|..+....... ......... .. .....+.+
T Consensus 168 ---~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~---~~~~~~~~~-~~-------~p~~r~~~ 233 (266)
T 4egf_A 168 ---HYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG---DEAKSAPMI-AR-------IPLGRFAV 233 (266)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC---SHHHHHHHH-TT-------CTTSSCBC
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc---ChHHHHHHH-hc-------CCCCCCcC
Confidence 67899999999998877653 45678888887542110000 001111111 11 13456889
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
++|+|+++++++...... ..++++++++|..+
T Consensus 234 p~dva~~v~~L~s~~~~~--itG~~i~vdGG~~~ 265 (266)
T 4egf_A 234 PHEVSDAVVWLASDAASM--INGVDIPVDGGYTM 265 (266)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGG
T ss_pred HHHHHHHHHHHhCchhcC--ccCcEEEECCCccC
Confidence 999999999999763321 11338999988654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=190.37 Aligned_cols=237 Identities=13% Similarity=0.055 Sum_probs=161.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC------------chhhh---hhcCCCceeEEEeecCCchh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP------------LPQLL---LDALPHSFVFFDVDLKSGSG 66 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~------------~~~~~---~~~~~~~~~~~~~D~~~~~~ 66 (300)
++|++|||||+|+||++++++|+++| ++|++++|+.+ ..... ....+..+.++++|++|+++
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEG---ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAA 85 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHH
Confidence 46899999999999999999999999 89999988722 11111 12235677889999999998
Q ss_pred HHHHHH----hcCCCCEEEEcccccCcc--ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCC-
Q 022280 67 FDAVAL----KFGQPDVVVNCAALSVPR--VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKS- 137 (300)
Q Consensus 67 ~~~~~~----~~~~~d~vih~a~~~~~~--~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~- 137 (300)
+.++++ .++++|+||||||+.... .+.+.++..+++|+.|++ ++++++... +.++||++||...+.....
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~ 164 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVI-NTVHAALPYLTSGASIITTGSVAGLIAAAQP 164 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHH-HHHHHHGGGCCTTCEEEEECCHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhH-HHHHHHHHHhhcCcEEEEeccchhccccccc
Confidence 766554 467999999999986543 234456789999999997 888888763 3459999999887655432
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC--c----
Q 022280 138 FYKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE--K---- 204 (300)
Q Consensus 138 ~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~---- 204 (300)
+..|+.+..+...|+.||.+.+.+.+.++ .++..++|+.|..+.... .. ......... +
T Consensus 165 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-----~~---~~~~~~~~~~~~~~~~ 236 (287)
T 3pxx_A 165 PGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNS-----AP---MYRQFRPDLEAPSRAD 236 (287)
T ss_dssp C-----CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSS-----HH---HHHHHCTTSSSCCHHH
T ss_pred ccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccc-----cc---hhhhhccccccchhHH
Confidence 33444443446789999999999887654 356789999998764321 00 000010000 0
Q ss_pred ----eeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 205 ----VEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 205 ----~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
........+.+.+++|+|+++++++...... ..++++++.+|..++
T Consensus 237 ~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~--itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 237 ALLAFPAMQAMPTPYVEASDISNAVCFLASDESRY--VTGLQFKVDAGAMLK 286 (287)
T ss_dssp HHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGG
T ss_pred HHhhhhhhcccCCCCCCHHHHHhhHheecchhhcC--CCCceEeECchhhhc
Confidence 0011111267899999999999999753221 113389999986543
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=183.40 Aligned_cols=221 Identities=15% Similarity=0.150 Sum_probs=156.0
Q ss_pred CCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCCC---chhhhhhcCCCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTP---LPQLLLDALPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
.+|++|||||+ |+||+++++.|+++| ++|++++|+.+ ....+....+ .+.++.+|++|+++++.+++
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREG---AQLAFTYATPKLEKRVREIAKGFG-SDLVVKCDVSLDEDIKNLKKFLEE 95 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHHHHHHH
Confidence 35789999999 999999999999999 89999999864 1222222222 36678999999998766654
Q ss_pred hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhhc---cCCeEEEeeccccccCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTEN---KENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
.++++|+||||||.... ..+.+.++..+++|+.|++ ++++++... +.++||++||...+.+.+.
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 170 (285)
T 2p91_A 96 NWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLI-ALTRELLPLMEGRNGAIVTLSYYGAEKVVPH---- 170 (285)
T ss_dssp HTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHGGGGTTSCCEEEEEECGGGTSBCTT----
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCEEEEEccchhccCCCC----
Confidence 45789999999997642 1233456678999999996 888887664 2369999999877655432
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+++.+.+.++ .++.+++|+.+.++.... .+ ....+..... .. .....
T Consensus 171 ------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-~~--~~~~~~~~~~-~~-------~p~~~ 233 (285)
T 2p91_A 171 ------YNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYS-IT--GFHLLMEHTT-KV-------NPFGK 233 (285)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC---CT--THHHHHHHHH-HH-------STTSS
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhc-cc--chHHHHHHHH-hc-------CCCCC
Confidence 6789999999999887653 367889999999875321 11 0112222111 11 12235
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+.+++|+|+++++++...... ..+.+|++.+|..
T Consensus 234 ~~~~~dva~~~~~l~s~~~~~--~tG~~~~vdgg~~ 267 (285)
T 2p91_A 234 PITIEDVGDTAVFLCSDWARA--ITGEVVHVDNGYH 267 (285)
T ss_dssp CCCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHcCCcccC--CCCCEEEECCCcc
Confidence 788999999999999753221 1133899988753
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-25 Score=184.11 Aligned_cols=225 Identities=18% Similarity=0.179 Sum_probs=156.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc--hhhhhhc---CCCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~--~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
++|++|||||+|+||++++++|+++| ++|++++|+++. ...+.+. .+..+.++.+|++|+++++.+++
T Consensus 1 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (258)
T 3a28_C 1 MSKVAMVTGGAQGIGRGISEKLAADG---FDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAE 77 (258)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999 899999998655 4433322 24567789999999988766554
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----ccC-CeEEEeeccccccCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NKE-NLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~-~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
.++++|+|||+||..... .+.+.++..+++|+.+++ ++++++.. .+. ++||++||...+.+.+.
T Consensus 78 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 150 (258)
T 3a28_C 78 KLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVF-FGIQAASRKFDELGVKGKIINAASIAAIQGFPI------ 150 (258)
T ss_dssp HHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCCEEEEECCGGGTSCCTT------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHH-HHHHHHHHHHHhcCCCcEEEEECcchhccCCCC------
Confidence 467899999999976432 123456778999999996 77766654 466 79999999887655432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh--cC--Cc-eeec-c-
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLS--KG--EK-VEFF-H- 209 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~--~~--~~-~~~~-~- 209 (300)
...|+.||.+.+.+.+.++ .++.+++|+.+..+... ........ .. .. .... .
T Consensus 151 ----~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 217 (258)
T 3a28_C 151 ----LSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWE---------QIDAELSKINGKPIGENFKEYSSS 217 (258)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHH---------HHHHHHHHHHCCCTTHHHHHHHTT
T ss_pred ----chhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhh---------hhhhhhccccCCchHHHHHHHHhc
Confidence 6789999999999887654 35678899888654210 00000000 00 00 0000 0
Q ss_pred CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 210 DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
.....+.+++|+|+++++++...... ..++++++.+|..+
T Consensus 218 ~p~~r~~~p~dvA~~v~~l~s~~~~~--~tG~~i~vdGG~~~ 257 (258)
T 3a28_C 218 IALGRPSVPEDVAGLVSFLASENSNY--VTGQVMLVDGGMLY 257 (258)
T ss_dssp CTTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESSSSCC
T ss_pred CCCCCccCHHHHHHHHHHHhCcccCC--CCCCEEEECCCEec
Confidence 12346899999999999999764211 12338999887543
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=187.90 Aligned_cols=224 Identities=14% Similarity=0.126 Sum_probs=156.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch-hhhh---hcCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-QLLL---DALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
+|+++|||||+|+||++++++|+++| ++|++++|+.+.. ..+. ...+..+.++++|++|+++++++++ .
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKG---YSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSH 82 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCC---CEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999 8999987775432 2222 2224568889999999998776665 4
Q ss_pred cCCCCEEEEccccc--Cc----cccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALS--VP----RVCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 74 ~~~~d~vih~a~~~--~~----~~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
++++|+||||||+. .. ....+.++..+++|+.+++ .+++++ ++.+.++||++||...++....
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~------ 155 (264)
T 3i4f_A 83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVF-HLLKLVVPVMRKQNFGRIINYGFQGADSAPGW------ 155 (264)
T ss_dssp HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCTTGGGCCCC------
T ss_pred hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHH-HHHHHHHHHHHhcCCCeEEEEeechhcccCCC------
Confidence 57899999999942 21 1223456788999999996 777776 5567779999999855432211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
.+...|+.||.+.+.+.+.++. ++.+++|+.++++.... ....... .. ........+.
T Consensus 156 --~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-----~~~~~~~-~~-------~~~~p~~r~~ 220 (264)
T 3i4f_A 156 --IYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEA-----TIQEARQ-LK-------EHNTPIGRSG 220 (264)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSC-----CHHHHHH-C---------------CCC
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchh-----ccHHHHH-HH-------hhcCCCCCCc
Confidence 2357899999999998876543 46789999998875321 1211111 11 0112345688
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+++|+|+++++++...... ..++++++.+|....
T Consensus 221 ~~~dva~~v~~l~s~~~~~--itG~~i~vdGG~~~~ 254 (264)
T 3i4f_A 221 TGEDIARTISFLCEDDSDM--ITGTIIEVTGAVDVI 254 (264)
T ss_dssp CHHHHHHHHHHHHSGGGTT--CCSCEEEESCSCCCC
T ss_pred CHHHHHHHHHHHcCcccCC--CCCcEEEEcCceeec
Confidence 9999999999999864321 113399999986544
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=187.78 Aligned_cols=206 Identities=15% Similarity=0.109 Sum_probs=145.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||++++++|+++| ++|++++|+.+....+.+.++..+.++++|++|++++..+++ .++++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 103 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAG---YGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRV 103 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45789999999999999999999999 899999998777666666666778889999999998766654 56799
Q ss_pred CEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhh----cc--CCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTE----NK--ENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 78 d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~--~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
|+||||||..... .+.+.++..+++|+.|++ .+++++.. .+ .++||++||...+.+...
T Consensus 104 D~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~--------- 173 (272)
T 4dyv_A 104 DVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPF-LCTQEAFRVMKAQEPRGGRIINNGSISATSPRPY--------- 173 (272)
T ss_dssp CEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTT---------
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHH-HHHHHHHHHHHhCCCCCcEEEEECchhhcCCCCC---------
Confidence 9999999985431 233456788999999986 66665543 33 459999999887755433
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+++.+.+.++. ++..++|+.|..+.... ... .............+++++
T Consensus 174 -~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-----~~~---------~~~~~~~~~~~~~~~~pe 238 (272)
T 4dyv_A 174 -SAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQK-----MKA---------GVPQADLSIKVEPVMDVA 238 (272)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC--------------------------------------CHH
T ss_pred -chHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhh-----hcc---------cchhhhhcccccCCCCHH
Confidence 67899999999999887653 45678888887653211 000 000000011234578999
Q ss_pred HHHHHHHHHHhccccc
Q 022280 220 DVVKIILALTNRWLSE 235 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~ 235 (300)
|+|+++++++..+...
T Consensus 239 dvA~~v~fL~s~~~~~ 254 (272)
T 4dyv_A 239 HVASAVVYMASLPLDA 254 (272)
T ss_dssp HHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHhCCCCcC
Confidence 9999999999986543
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=186.26 Aligned_cols=222 Identities=16% Similarity=0.135 Sum_probs=155.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecCCchhHHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
|++|++|||||+|+||+++++.|+++| ++|++++|+.+........+ +..+.++.+|++|+++++.+++
T Consensus 19 l~~k~~lVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (267)
T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQGLAEAG---CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 95 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999 89999999865544433322 4567778999999988766554
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccc-cccCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQ-VYEGVKSFYKEED 143 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~-~~~~~~~~~~E~~ 143 (300)
.++++|+||||||...... ..+.++..+++|+.|++ ++++++ ++.+.++||++||.. .+.+..
T Consensus 96 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------- 167 (267)
T 1vl8_A 96 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTY-YVCREAFSLLRESDNPSIINIGSLTVEEVTMP------- 167 (267)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTCSSCEEEEECCGGGTCCCSS-------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCcEEEEECCcchhccCCC-------
Confidence 4678999999999764322 22345678899999996 776655 445678999999977 433222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
+...|+.||.+++.+.+.++ .++.+++|+.+..+....... ......... .. .....+.
T Consensus 168 ---~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~---~~~~~~~~~-~~-------~p~~~~~ 233 (267)
T 1vl8_A 168 ---NISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS---DPEKLDYML-KR-------IPLGRTG 233 (267)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT---CHHHHHHHH-HT-------CTTSSCB
T ss_pred ---CChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccccccc---ChHHHHHHH-hh-------CCCCCCc
Confidence 25689999999999887653 467889999987653210000 011111111 11 1234588
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++|+|+++++++...... ..++++++.+|.
T Consensus 234 ~p~dvA~~v~~l~s~~~~~--itG~~i~vdGG~ 264 (267)
T 1vl8_A 234 VPEDLKGVAVFLASEEAKY--VTGQIIFVDGGW 264 (267)
T ss_dssp CGGGGHHHHHHHHSGGGTT--CCSCEEEESTTG
T ss_pred CHHHHHHHHHHHcCccccC--CcCCeEEECCCC
Confidence 9999999999999763211 113388888874
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-25 Score=185.66 Aligned_cols=217 Identities=16% Similarity=0.172 Sum_probs=154.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH---hcCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL---KFGQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~~~~d 78 (300)
++|++|||||+|+||++++++|+++| ++|++++|+.+. ..+.++..+.++++|++|.++++.+++ +++++|
T Consensus 8 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id 81 (257)
T 3tl3_A 8 RDAVAVVTGGASGLGLATTKRLLDAG---AQVVVLDIRGED---VVADLGDRARFAAADVTDEAAVASALDLAETMGTLR 81 (257)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHHT---CEEEEEESSCHH---HHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCchHH---HHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999999999 899999986432 333446678889999999998766654 357999
Q ss_pred EEEEcccccCcc--------ccccChhhhhhcccccchHHHHHhhhh------------ccCCeEEEeeccccccCCCCC
Q 022280 79 VVVNCAALSVPR--------VCENDPDSAMSINVPSSLVNWLSSFTE------------NKENLLIHLSTDQVYEGVKSF 138 (300)
Q Consensus 79 ~vih~a~~~~~~--------~~~~~~~~~~~~nv~~~~~~l~~~~~~------------~~~~~~v~~SS~~~~~~~~~~ 138 (300)
++|||||..... .+.+.++..+++|+.+++ .+++++.. .+.++||++||...+.+...
T Consensus 82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~- 159 (257)
T 3tl3_A 82 IVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSF-NVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIG- 159 (257)
T ss_dssp EEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHH-HHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCHHH-
T ss_pred EEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHH-HHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCCCC-
Confidence 999999975321 234457788999999996 77776654 23458999999887755433
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCc
Q 022280 139 YKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE 211 (300)
Q Consensus 139 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
...|+.||.+.+.+.+.++. ++..++|+.|..+... ........... ... .
T Consensus 160 ---------~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~-----~~~~~~~~~~~-~~~-------~ 217 (257)
T 3tl3_A 160 ---------QAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLA-----SLPEEARASLG-KQV-------P 217 (257)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC--------CHHHHHHHH-HTS-------S
T ss_pred ---------CccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhh-----hccHHHHHHHH-hcC-------C
Confidence 56899999999998876643 4577899988765421 11222222111 111 1
Q ss_pred c-cCceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 212 C-RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 212 ~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
. ..+.+++|+|++++++++.....|+ ++++.+|..++
T Consensus 218 ~~~r~~~p~dva~~v~~l~s~~~itG~----~i~vdGG~~~~ 255 (257)
T 3tl3_A 218 HPSRLGNPDEYGALAVHIIENPMLNGE----VIRLDGAIRMA 255 (257)
T ss_dssp SSCSCBCHHHHHHHHHHHHHCTTCCSC----EEEESTTC---
T ss_pred CCCCccCHHHHHHHHHHHhcCCCCCCC----EEEECCCccCC
Confidence 2 4688999999999999987555555 89999986654
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-25 Score=190.26 Aligned_cols=227 Identities=10% Similarity=0.141 Sum_probs=158.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc--------CCCceeEEEeecCCchhHHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA--------LPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
|.+++||||||+|+||++++++|+++| ++|++++|+.+....+.+. .+..+.++.+|++|.++++.+++
T Consensus 16 l~~k~vlVTGasggIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 92 (303)
T 1yxm_A 16 LQGQVAIVTGGATGIGKAIVKELLELG---SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 92 (303)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence 356899999999999999999999999 8999999986554433322 24567889999999998776665
Q ss_pred h----cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCC
Q 022280 73 K----FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 73 ~----~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
. ++++|+||||||..... ...+.++..+++|+.+++ ++++++.. .+.++||++||.. +.+.+
T Consensus 93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~iv~isS~~-~~~~~---- 166 (303)
T 1yxm_A 93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF-YMCKAVYSSWMKEHGGSIVNIIVPT-KAGFP---- 166 (303)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHTHHHHCEEEEEECCCC-TTCCT----
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhcCCeEEEEEeec-ccCCC----
Confidence 3 57899999999965322 122345678999999996 88887654 3456999999987 33322
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
....|+.+|.+.+.+.+.++ .++.++||+.++|+........ ....+..... ......
T Consensus 167 ------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~--------~~~p~~ 231 (303)
T 1yxm_A 167 ------LAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGS-WGQSFFEGSF--------QKIPAK 231 (303)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGG-GGGGGGTTGG--------GGSTTS
T ss_pred ------cchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccc-cchHHHHHHH--------hcCccc
Confidence 25689999999998887653 3578899999999842111100 0000000000 011234
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCccCH
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSR 253 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~ 253 (300)
.+.+++|+|+++++++...... ..+.++++.+|..++.
T Consensus 232 ~~~~~~dvA~~i~~l~~~~~~~--~~G~~~~v~gG~~~~~ 269 (303)
T 1yxm_A 232 RIGVPEEVSSVVCFLLSPAASF--ITGQSVDVDGGRSLYT 269 (303)
T ss_dssp SCBCTHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGCB
T ss_pred CCCCHHHHHHHHHHHhCccccc--CCCcEEEECCCeeccc
Confidence 6889999999999999764311 1133899999876553
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-25 Score=185.26 Aligned_cols=205 Identities=10% Similarity=0.037 Sum_probs=141.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHhc---C
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALKF---G 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~---~ 75 (300)
+++++|||||+|+||++++++|+++| ++|++++|+.+....+.+.+ +..+.++.+|++|+++++.+++.. +
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEG---FTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 46899999999999999999999999 89999999877666554433 567888999999999877766543 6
Q ss_pred CCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|++|||||..... .+.+.++..+++|+.|++ .+.+++ ++.+.++||++||...+.+...
T Consensus 83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 151 (252)
T 3h7a_A 83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGF-VSGRESARLMLAHGQGKIFFTGATASLRGGSG---------- 151 (252)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEEEEGGGTCCCTT----------
T ss_pred CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEECCHHHcCCCCC----------
Confidence 899999999986542 233456788999999996 666655 4456679999999887655433
Q ss_pred CChhHHHHHHHHHHHHHHcCC-------c-eeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCSN-------F-AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~~-------~-~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+.+.+.+.++.+ + .++.|+.+..+.... ....... ........+ +.+++
T Consensus 152 ~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~-----~~~~~~~--------~~~~~~~~~-~~~pe 217 (252)
T 3h7a_A 152 FAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRE-----RREQMFG--------KDALANPDL-LMPPA 217 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------------CCHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhc-----cchhhhh--------hhhhcCCcc-CCCHH
Confidence 678999999999998876543 3 345666554332110 0000000 000011233 88999
Q ss_pred HHHHHHHHHHhcccc
Q 022280 220 DVVKIILALTNRWLS 234 (300)
Q Consensus 220 D~a~~~~~~~~~~~~ 234 (300)
|+|+++++++..+..
T Consensus 218 dvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 218 AVAGAYWQLYQQPKS 232 (252)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCchh
Confidence 999999999986443
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-25 Score=187.55 Aligned_cols=204 Identities=16% Similarity=0.115 Sum_probs=148.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||++++++|+++| ++|++++|+.+....+. ...+.++++|++|.++++.+++ .++++
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 88 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEG---HPLLLLARRVERLKALN---LPNTLCAQVDVTDKYTFDTAITRAEKIYGPA 88 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCHHHHHTTC---CTTEEEEECCTTCHHHHHHHHHHHHHHHCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHhh---cCCceEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999999999 89999999855443322 3467778999999988766554 46789
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||...... ..+.++..+++|+.|++ ++++++ ++.+.++||++||...+.+... ..
T Consensus 89 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~----------~~ 157 (266)
T 3p19_A 89 DAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLL-NGMQAVLAPMKARNCGTIINISSIAGKKTFPD----------HA 157 (266)
T ss_dssp EEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEECCGGGTSCCTT----------CH
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEEcChhhCCCCCC----------Cc
Confidence 99999999864322 23345678999999996 755544 4567789999999888765443 67
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.||.+.+.+.+.++ .++.+++|+.|..+....... .... ...... ......+++++|+|
T Consensus 158 ~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~----~~~~-~~~~~~------~~~~~r~~~pedvA 226 (266)
T 3p19_A 158 AYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTS----QQIK-DGYDAW------RVDMGGVLAADDVA 226 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSC----HHHH-HHHHHH------HHHTTCCBCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccc----hhhh-HHHHhh------cccccCCCCHHHHH
Confidence 89999999999887654 356789999998764321111 1111 111000 01234688999999
Q ss_pred HHHHHHHhccc
Q 022280 223 KIILALTNRWL 233 (300)
Q Consensus 223 ~~~~~~~~~~~ 233 (300)
++++++++.+.
T Consensus 227 ~av~~l~~~~~ 237 (266)
T 3p19_A 227 RAVLFAYQQPQ 237 (266)
T ss_dssp HHHHHHHHSCT
T ss_pred HHHHHHHcCCC
Confidence 99999999854
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-25 Score=184.57 Aligned_cols=224 Identities=17% Similarity=0.101 Sum_probs=154.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++|++|||||+|+||++++++|+++| ++|++++|+++....+.+. .+..+.++++|++|++++.++++ .+
T Consensus 1 m~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (256)
T 1geg_A 1 MKKVALVTGAGQGIGKAIALRLVKDG---FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL 77 (256)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999 8999999986554443332 24567788999999988766654 46
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hcc-CCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENK-ENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|+||||||..... .+.+.++..+++|+.+++ .+++++. +.+ .++||++||...+.+.+.
T Consensus 78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 148 (256)
T 1geg_A 78 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVI-WGIQAAVEAFKKEGHGGKIINACSQAGHVGNPE-------- 148 (256)
T ss_dssp TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTT--------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC--------
Confidence 7899999999976432 123345678999999996 6655544 345 579999999876654332
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh--c--CCc-ee-ecc-Cc
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLS--K--GEK-VE-FFH-DE 211 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~--~--~~~-~~-~~~-~~ 211 (300)
...|+.||.+.+.+.+.++. ++.+++|+.+.++... .+...... . ... .. +.. ..
T Consensus 149 --~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p 217 (256)
T 1geg_A 149 --LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWA---------EIDRQVSEAAGKPLGYGTAEFAKRIT 217 (256)
T ss_dssp --BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH---------HHHHHHHHHHTCCTTHHHHHHHTTCT
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhh---------hhhhhccccccCChHHHHHHHHhcCC
Confidence 56899999999998877643 5678999998765310 00000000 0 000 00 000 12
Q ss_pred ccCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 212 CRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
...+.+++|+|+++++++...... ..++++++.+|..
T Consensus 218 ~~r~~~p~dvA~~v~~l~s~~~~~--~tG~~i~vdGG~~ 254 (256)
T 1geg_A 218 LGRLSEPEDVAACVSYLASPDSDY--MTGQSLLIDGGMV 254 (256)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESSSSS
T ss_pred CCCCcCHHHHHHHHHHHhCccccC--CCCCEEEeCCCcc
Confidence 346899999999999999764211 1133899988754
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-25 Score=188.48 Aligned_cols=227 Identities=14% Similarity=0.137 Sum_probs=158.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CC---ceeEEEeecCCchhHHHHHH--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PH---SFVFFDVDLKSGSGFDAVAL-- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~---~~~~~~~D~~~~~~~~~~~~-- 72 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+.+....+.+.+ +. .+.++.+|++|+++++.+++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEG---ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 80 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 89999999865554443322 22 67789999999998766554
Q ss_pred --hcCCCCEEEEcccccCccc--------cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCC-CC
Q 022280 73 --KFGQPDVVVNCAALSVPRV--------CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGV-KS 137 (300)
Q Consensus 73 --~~~~~d~vih~a~~~~~~~--------~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~-~~ 137 (300)
.++++|+||||||...... +.+.++..+++|+.+++ ++++++.. .+ ++||++||...+.+. +
T Consensus 81 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~- 157 (280)
T 1xkq_A 81 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVI-EMTKKVKPHLVASK-GEIVNVSSIVAGPQAQP- 157 (280)
T ss_dssp HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHT-CEEEEECCGGGSSSCCC-
T ss_pred HHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHhhcCC-CcEEEecCccccCCCCC-
Confidence 4678999999999764321 23346778999999996 77776654 34 799999998877553 2
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHH-HHHHHhcCCceeecc
Q 022280 138 FYKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQW-IDSVLSKGEKVEFFH 209 (300)
Q Consensus 138 ~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 209 (300)
+...|+.||.+.+.+.+.++ .++.+++|+.+.++...... ....... .......... .
T Consensus 158 ---------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~----~ 223 (280)
T 1xkq_A 158 ---------DFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMG-MPDQASQKFYNFMASHKE----C 223 (280)
T ss_dssp ---------SSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTT-CCHHHHHHHHHHHHHCTT----T
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccc-cccccccchHHHHHHHHc----C
Confidence 26789999999999887654 36788999999876421100 0000000 0011111000 1
Q ss_pred CcccCceeHHHHHHHHHHHHhcc-c--cccccccceeeecCCCcc
Q 022280 210 DECRCPVYVRDVVKIILALTNRW-L--SEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~-~--~~~~~~~~i~ni~~~~~~ 251 (300)
...+.+.+++|+|+++++++... . ..|+ ++++.+|...
T Consensus 224 ~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~----~i~vdgG~~~ 264 (280)
T 1xkq_A 224 IPIGAAGKPEHIANIILFLADRNLSFYILGQ----SIVADGGTSL 264 (280)
T ss_dssp CTTSSCBCHHHHHHHHHHHHCHHHHTTCCSC----EEEESTTGGG
T ss_pred CCCCCCCCHHHHHHHHHHhcCcccccCccCC----eEEECCCccc
Confidence 12456899999999999999754 2 2334 8999888644
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-26 Score=189.83 Aligned_cols=222 Identities=12% Similarity=0.033 Sum_probs=150.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~vi 81 (300)
||+||||||+|+||++++++|+++| ++|++++|+++.... . +.+|++|.++++++++++ +++|+||
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~~---------~-~~~Dl~~~~~v~~~~~~~~~~id~lv 67 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAG---HQIVGIDIRDAEVIA---------D-LSTAEGRKQAIADVLAKCSKGMDGLV 67 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSSSEEC---------C-TTSHHHHHHHHHHHHTTCTTCCSEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCchhhcc---------c-cccCCCCHHHHHHHHHHhCCCCCEEE
Confidence 5789999999999999999999999 899999998654321 1 578999999999998877 7899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCC-CCCC-----C---------
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKS-FYKE-----E--------- 142 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~-~~~E-----~--------- 142 (300)
||||.... ...++..+++|+.+++ ++++++. +.+.++||++||...+..... +..+ .
T Consensus 68 ~~Ag~~~~---~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (257)
T 1fjh_A 68 LCAGLGPQ---TKVLGNVVSVNYFGAT-ELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIV 143 (257)
T ss_dssp ECCCCCTT---CSSHHHHHHHHTHHHH-HHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHH
T ss_pred ECCCCCCC---cccHHHHHHHhhHHHH-HHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhh
Confidence 99997642 1347889999999996 7777765 456679999999988732111 1000 0
Q ss_pred ---CCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 143 ---DEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 143 ---~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
.+..+...|+.||.+.+.+++.++ .++.+++|+.+.++......+ ........ . . .....
T Consensus 144 ~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~~~~~~~~-~--~---~~~~~ 213 (257)
T 1fjh_A 144 EHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ----DPRYGESI-A--K---FVPPM 213 (257)
T ss_dssp HTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-------------------------------CCCST
T ss_pred hcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhcc----chhHHHHH-H--h---ccccc
Confidence 122235689999999999887654 357889999998764321100 00011101 0 0 01223
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCH
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSR 253 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~ 253 (300)
..+.+++|+|+++++++..+... ..+++|++.+|...++
T Consensus 214 ~~~~~~~dvA~~~~~l~~~~~~~--~tG~~~~vdgG~~~~~ 252 (257)
T 1fjh_A 214 GRRAEPSEMASVIAFLMSPAASY--VHGAQIVIDGGIDAVM 252 (257)
T ss_dssp TSCCCTHHHHHHHHHHTSGGGTT--CCSCEEEESTTHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCchhcC--CcCCEEEECCCccccc
Confidence 46889999999999999764211 1233899988765443
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-25 Score=190.24 Aligned_cols=230 Identities=13% Similarity=0.084 Sum_probs=160.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CC---ceeEEEeecCCchhHHHHHH---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PH---SFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~---~~~~~~~D~~~~~~~~~~~~--- 72 (300)
++|++|||||+|+||+++++.|+++| ++|++++|+++......+.+ +. .+.++.+|++|+++++.+++
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 101 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEG---AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 101 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 89999999865554433322 23 67789999999998766654
Q ss_pred -hcCCCCEEEEcccccCccc------cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCC-CCCCC
Q 022280 73 -KFGQPDVVVNCAALSVPRV------CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGV-KSFYK 140 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~~~------~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~-~~~~~ 140 (300)
.++++|+||||||...... ..+.++..+++|+.|++ ++++++.. .+ ++||++||...+.+. +
T Consensus 102 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~-g~IV~isS~~~~~~~~~---- 175 (297)
T 1xhl_A 102 AKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI-EMTQKTKEHLIKTK-GEIVNVSSIVAGPQAHS---- 175 (297)
T ss_dssp HHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTT-CEEEEECCGGGSSSCCT----
T ss_pred HhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHH-HHHHHHHHHHHhcC-CEEEEEcCchhccCCCC----
Confidence 4678999999999754321 23346778999999996 77666554 34 799999998877553 2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHH-HHHHHhcCCceeeccCcc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQW-IDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 212 (300)
+...|+.||.+++.+.+.++ .++.+++|+.+.++....... ...... .......... ....
T Consensus 176 ------~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~~~~~~----~~p~ 244 (297)
T 1xhl_A 176 ------GYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGL-PETASDKLYSFIGSRKE----CIPV 244 (297)
T ss_dssp ------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTC-CHHHHHHHHHHHHHCTT----TCTT
T ss_pred ------CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCcccccccc-ccccccchHHHHHHHHh----cCCC
Confidence 26689999999999887653 467889999998763211000 000000 0011101000 0123
Q ss_pred cCceeHHHHHHHHHHHHhcc---ccccccccceeeecCCCccCHHH
Q 022280 213 RCPVYVRDVVKIILALTNRW---LSEDKQMQLLLNVGGPDRVSRVQ 255 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~---~~~~~~~~~i~ni~~~~~~s~~e 255 (300)
..+.+++|+|+++++++... ...|+ ++++.+|....+.+
T Consensus 245 ~r~~~pedvA~~v~~l~s~~~~~~itG~----~i~vdGG~~~~~~~ 286 (297)
T 1xhl_A 245 GHCGKPEEIANIIVFLADRNLSSYIIGQ----SIVADGGSTLVMGM 286 (297)
T ss_dssp SSCBCHHHHHHHHHHHHCHHHHTTCCSC----EEEESTTGGGCCGG
T ss_pred CCCcCHHHHHHHHHHHhCCcccCCccCc----EEEECCCccccccc
Confidence 46899999999999999754 22344 89999987665544
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=178.50 Aligned_cols=225 Identities=11% Similarity=0.064 Sum_probs=158.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHH----Hh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVA----LK 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~----~~ 73 (300)
|++|++|||||+++||+++++.|+++| ++|++.+|+.+..++..++ .+..+.++++|++|+++++.++ ++
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~G---a~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALND---SIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999 8999999987666555443 3567788999999999866555 56
Q ss_pred cCCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|++|||||+... +.+.+.++..+++|+.|++ .+.++ +++++.++||++||.....+.+.
T Consensus 82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~-~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~~------- 153 (254)
T 4fn4_A 82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAF-YSSRAVIPIMLKQGKGVIVNTASIAGIRGGFA------- 153 (254)
T ss_dssp HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTCSSSS-------
T ss_pred cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEEechhhcCCCCC-------
Confidence 7899999999997532 1234567889999999996 55444 55567779999999887655443
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||..+..+.+.++. ++..+-||.|--+-....... ............ .....+..
T Consensus 154 ---~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~--~~~~~~~~~~~~-------~~~~R~g~ 221 (254)
T 4fn4_A 154 ---GAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKP--SELGMRTLTKLM-------SLSSRLAE 221 (254)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSC--CHHHHHHHHHHH-------TTCCCCBC
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCC--cHHHHHHHHhcC-------CCCCCCcC
Confidence 67899999999998887654 345677777754421111110 011111111100 11235678
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++|+|.++++|+...... -.++++.+.+|..
T Consensus 222 pediA~~v~fLaSd~a~~--iTG~~i~VDGG~t 252 (254)
T 4fn4_A 222 PEDIANVIVFLASDEASF--VNGDAVVVDGGLT 252 (254)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhCchhcC--CcCCEEEeCCCcc
Confidence 999999999999653221 1233899988743
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=179.03 Aligned_cols=219 Identities=14% Similarity=0.077 Sum_probs=155.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|++|++|||||+|+||++++++|+++| ++|++++|++++...+.+..+ +.++.+|++|+++++.+++ .+++
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~g~ 77 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEG---ARLVACDIEEGPLREAAEAVG--AHPVVMDVADPASVERGFAEALAHLGR 77 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTTT--CEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHcC--CEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 356899999999999999999999999 899999998665555554442 6678999999988766554 4678
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+||||||...... ..+.++..+++|+.+++ ++++++.. .+.++||++||...++ .. ..
T Consensus 78 id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~m~~~~~g~iv~isS~~~~~-~~----------~~ 145 (245)
T 1uls_A 78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSF-LVAKAASEAMREKNPGSIVLTASRVYLG-NL----------GQ 145 (245)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHHHHTTTCCEEEEEECCGGGGC-CT----------TC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCEEEEEccchhcC-CC----------Cc
Confidence 999999999764321 23345678899999996 77666543 4667999999988433 22 25
Q ss_pred ChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.||.+.+.+.+.++ .++.+++|+.+..+.... .......... ... ....+.+++|+
T Consensus 146 ~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-----~~~~~~~~~~-~~~-------p~~~~~~~~dv 212 (245)
T 1uls_A 146 ANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK-----VPEKVREKAI-AAT-------PLGRAGKPLEV 212 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS-----SCHHHHHHHH-HTC-------TTCSCBCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhh-----cCHHHHHHHH-hhC-------CCCCCcCHHHH
Confidence 689999999998887654 356889999987664211 1112222211 111 12357899999
Q ss_pred HHHHHHHHhccccccccccceeeecCCCcc
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
|+++++++...... ..++++++.+|..+
T Consensus 213 A~~v~~l~s~~~~~--~tG~~~~vdgG~~~ 240 (245)
T 1uls_A 213 AYAALFLLSDESSF--ITGQVLFVDGGRTI 240 (245)
T ss_dssp HHHHHHHHSGGGTT--CCSCEEEESTTTTT
T ss_pred HHHHHHHhCchhcC--CcCCEEEECCCccc
Confidence 99999999763211 12338899887543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-25 Score=184.79 Aligned_cols=206 Identities=13% Similarity=0.145 Sum_probs=144.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|++|++|||||+|+||+++++.|+++| ++|++++|+.+....+.+.+ +..+.++.+|++|.++++.+++ .
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 78 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAG---AKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDT 78 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999 89999999866555544332 5567788999999998766554 4
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||...... +.+.++..+++|+.|++ .+.+++ ++.+.++||++||...+.+...
T Consensus 79 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~-------- 149 (264)
T 3tfo_A 79 WGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVL-WGIGAVLPIMEAQRSGQIINIGSIGALSVVPT-------- 149 (264)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTCCCTT--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCeEEEEEcCHHHcccCCC--------
Confidence 679999999999865422 33456788999999996 666554 3456679999999887765443
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-----CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-----NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-----~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.||.+++.+.+.++. ++..++||.|..+-.... . ............+.++.++|
T Consensus 150 --~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~---------~-----~~~~~~~~~~~~~~~~~ped 213 (264)
T 3tfo_A 150 --AAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTI---------T-----HEETMAAMDTYRAIALQPAD 213 (264)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC-------------------------------------CCCHHH
T ss_pred --ChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccc---------c-----chhHHHHHHhhhccCCCHHH
Confidence 67899999999999887654 346677777765421100 0 00000000001122578999
Q ss_pred HHHHHHHHHhcccc
Q 022280 221 VVKIILALTNRWLS 234 (300)
Q Consensus 221 ~a~~~~~~~~~~~~ 234 (300)
+|++++++++.+..
T Consensus 214 vA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 214 IARAVRQVIEAPQS 227 (264)
T ss_dssp HHHHHHHHHHSCTT
T ss_pred HHHHHHHHhcCCcc
Confidence 99999999988543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=183.79 Aligned_cols=227 Identities=13% Similarity=0.083 Sum_probs=157.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CCC-ceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LPH-SFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~~-~~~~~~~D~~~~~~~~~~~~---- 72 (300)
.++++|||||+|+||++++++|+++| ++|++++|+.+......+. .+. .+.++.+|++|.+++..+++
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEAG---AAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACER 83 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999 8999999986655444332 233 47788999999998766554
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.++++|++|||||..... .+.+.++..+++|+.+++ .+++++. +.+.++||++||...+.+...
T Consensus 84 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 155 (265)
T 3lf2_A 84 TLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVI-HPVRAFLPQLESRADAAIVCVNSLLASQPEPH------- 155 (265)
T ss_dssp HHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHTTSTTEEEEEEEEGGGTSCCTT-------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCeEEEEECCcccCCCCCC-------
Confidence 467999999999986442 233456788999999996 7777664 345568999999887765443
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCC-----CCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTIS-----PVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.||.+++.+.+.++. ++..++|+.+..+.... .........+. ..+.... ....
T Consensus 156 ---~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~p~ 226 (265)
T 3lf2_A 156 ---MVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWT-AQLARNK-----QIPL 226 (265)
T ss_dssp ---BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHH-HHHHHHT-----TCTT
T ss_pred ---chhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHH-HHHhhcc-----CCCc
Confidence 67999999999998887654 45678888887542100 00000001111 1110000 0134
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
..+.+++|+|+++++++...... ..++++++.+|..
T Consensus 227 ~r~~~pedvA~~v~fL~s~~~~~--itG~~i~vdGG~~ 262 (265)
T 3lf2_A 227 GRLGKPIEAARAILFLASPLSAY--TTGSHIDVSGGLS 262 (265)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTT--CCSEEEEESSSCC
T ss_pred CCCcCHHHHHHHHHHHhCchhcC--cCCCEEEECCCCc
Confidence 56889999999999999753221 1233899988753
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-25 Score=185.48 Aligned_cols=223 Identities=17% Similarity=0.198 Sum_probs=156.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhh---hcCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLL---DALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.++++|||||+|+||++++++|+++| ++|++.+++.. ...... ...+..+.++.+|++|.++++.+++ .
T Consensus 24 ~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAG---MAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLAD 100 (269)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999 89998885532 222222 2234567889999999998766554 4
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||...... ..+.++..+++|+.+++ ++++.+. +.+.++||++||...+.+...
T Consensus 101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 171 (269)
T 3gk3_A 101 FGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMF-NVTKQFIAGMVERRFGRIVNIGSVNGSRGAFG-------- 171 (269)
T ss_dssp HSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT--------
T ss_pred cCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCEEEEeCChhhccCCCC--------
Confidence 578999999999865422 33456678999999996 7766654 356679999999887755433
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+.+.+.+.++. ++.+++|+.+..+.... ...... .. ..........+.++
T Consensus 172 --~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-----~~~~~~-----~~--~~~~~~~~~~~~~p 237 (269)
T 3gk3_A 172 --QANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEA-----VPQDVL-----EA--KILPQIPVGRLGRP 237 (269)
T ss_dssp --BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-----------------C--CSGGGCTTSSCBCH
T ss_pred --cchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhh-----hchhHH-----HH--HhhhcCCcCCccCH
Confidence 67899999999998876543 45778898887654221 111000 00 00111245678899
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+|+|+++++++...... ..++++++++|..++
T Consensus 238 ~dvA~~v~~L~s~~~~~--itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 238 DEVAALIAFLCSDDAGF--VTGADLAINGGMHMS 269 (269)
T ss_dssp HHHHHHHHHHTSTTCTT--CCSCEEEESTTSCCC
T ss_pred HHHHHHHHHHhCCCcCC--eeCcEEEECCCEeCc
Confidence 99999999999764311 123389999987654
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-25 Score=182.39 Aligned_cols=207 Identities=13% Similarity=0.033 Sum_probs=153.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++|++|||||+|+||++++++|+++| ++|++.+|+.+ +|++|++++++++++++++|++|
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~-----------------~D~~~~~~v~~~~~~~g~id~lv 64 (223)
T 3uce_A 5 DKTVYVVLGGTSGIGAELAKQLESEH---TIVHVASRQTG-----------------LDISDEKSVYHYFETIGAFDHLI 64 (223)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHCSTT---EEEEEESGGGT-----------------CCTTCHHHHHHHHHHHCSEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEecCCcc-----------------cCCCCHHHHHHHHHHhCCCCEEE
Confidence 45789999999999999999999999 89999988632 79999999999999888999999
Q ss_pred EcccccCc-----cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHH
Q 022280 82 NCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKS 154 (300)
Q Consensus 82 h~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~s 154 (300)
||||.... ..+.+.++..+++|+.+++ .+++++... ..++||++||...+.+... ...|+.|
T Consensus 65 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~----------~~~Y~as 133 (223)
T 3uce_A 65 VTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAV-LAAKHGARYLKQGGSITLTSGMLSRKVVAN----------TYVKAAI 133 (223)
T ss_dssp ECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHH-HHHHHHGGGEEEEEEEEEECCGGGTSCCTT----------CHHHHHH
T ss_pred ECCCCCCCCCCcccCCHHHHHhhheeeeeeHH-HHHHHHHhhccCCeEEEEecchhhccCCCC----------chHHHHH
Confidence 99997632 1233456778999999997 888887763 2248999999888766543 6789999
Q ss_pred HHHHHHHHHHHcC-----CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHH
Q 022280 155 KVAAEKFIYEKCS-----NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALT 229 (300)
Q Consensus 155 K~~~e~~~~~~~~-----~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 229 (300)
|.+.+.+.+.++. ++..++|+.+..+.... ........+..... . ..+.+.+.+++|+|+++++++
T Consensus 134 K~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~-~~~~~~~~~~~~~~-~-------~~~~~~~~~~~dvA~~~~~l~ 204 (223)
T 3uce_A 134 NAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKG-MNADDRDAMYQRTQ-S-------HLPVGKVGEASDIAMAYLFAI 204 (223)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTT-SCHHHHHHHHHHHH-H-------HSTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhh-cchhhHHHHHHHHh-h-------cCCCCCccCHHHHHHHHHHHc
Confidence 9999998877654 45668888887653211 11000111111111 1 123456889999999999999
Q ss_pred hccccccccccceeeecCCCccC
Q 022280 230 NRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 230 ~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+.....|+ ++++++|..++
T Consensus 205 ~~~~~tG~----~i~vdgG~~~s 223 (223)
T 3uce_A 205 QNSYMTGT----VIDVDGGALLG 223 (223)
T ss_dssp HCTTCCSC----EEEESTTGGGC
T ss_pred cCCCCCCc----EEEecCCeecC
Confidence 86555555 89999986553
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-25 Score=185.03 Aligned_cols=222 Identities=17% Similarity=0.144 Sum_probs=161.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|.+|++|||||+|+||++++++|+++| ++|++++|+++......+.+...+.++.+|++|+++++.+++ .+++
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREG---ASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGR 80 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 356899999999999999999999999 899999998766666655555667789999999998766554 4678
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
+|+||||||...... ..+.++..+++|+.+++ ++++++... ..++||++||...+ +... ...
T Consensus 81 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~g~iv~isS~~~~-~~~~----------~~~ 148 (263)
T 2a4k_A 81 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSF-LVARKAGEVLEEGGSLVLTGSVAGL-GAFG----------LAH 148 (263)
T ss_dssp CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHH-HHHHHHHHHCCTTCEEEEECCCTTC-CHHH----------HHH
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhcCCEEEEEecchhc-CCCC----------cHH
Confidence 999999999864321 22345678899999996 888877653 24599999999887 3322 568
Q ss_pred hHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHH
Q 022280 151 YGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 223 (300)
|+.||.+.+.+.+.++ .++.+++|+.+.++.... .......... ... ....+.+++|+|+
T Consensus 149 Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-----~~~~~~~~~~-~~~-------p~~~~~~p~dvA~ 215 (263)
T 2a4k_A 149 YAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG-----LPPWAWEQEV-GAS-------PLGRAGRPEEVAQ 215 (263)
T ss_dssp HHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT-----SCHHHHHHHH-HTS-------TTCSCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhh-----cCHHHHHHHH-hcC-------CCCCCcCHHHHHH
Confidence 9999999988887653 357889999998764321 1112222111 111 2245789999999
Q ss_pred HHHHHHhccccccccccceeeecCCCccC
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
++++++...... ..++++++.+|..+.
T Consensus 216 ~v~~l~s~~~~~--~tG~~i~vdgG~~~~ 242 (263)
T 2a4k_A 216 AALFLLSEESAY--ITGQALYVDGGRSIV 242 (263)
T ss_dssp HHHHHHSGGGTT--CCSCEEEESTTTTTC
T ss_pred HHHHHhCccccC--CcCCEEEECCCcccc
Confidence 999999764211 123389998886543
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=183.49 Aligned_cols=225 Identities=14% Similarity=0.087 Sum_probs=151.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhh---hcCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLL---DALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.+|++|||||+|+||++++++|+++| ++|++++++ .+...... ...+..+.++.+|++|.++++.+++ .
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEG---ANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 899988444 33333322 2235567789999999998766554 4
Q ss_pred cCCCCEEEEcccccCc-c----ccccChhhhhhcccccchHHHHHhhhhcc--CCeEEEeeccccc-cCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP-R----VCENDPDSAMSINVPSSLVNWLSSFTENK--ENLLIHLSTDQVY-EGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~--~~~~v~~SS~~~~-~~~~~~~~E~~~~ 145 (300)
++++|+||||||.... . .+.+.++..+++|+.|++ .+++++...- .++||++||...+ .+...
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 154 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLF-LTAKTALPKMAKGGAIVTFSSQAGRDGGGPG-------- 154 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHGGGEEEEEEEEEECCHHHHHCCSTT--------
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCEEEEEcCHHhccCCCCC--------
Confidence 6789999999997522 1 223345778999999997 8888887642 2499999998877 43332
Q ss_pred CCCChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+.+.+.+.++. ++..+.|+.+..+...... ...... .+ ......+.+.+++
T Consensus 155 --~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~----~~~~~~-~~-------~~~~p~~r~~~pe 220 (259)
T 3edm_A 155 --ALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFT----KPEVRE-RV-------AGATSLKREGSSE 220 (259)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC----------------------------------CCBCHH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCccccccc----ChHHHH-HH-------HhcCCCCCCcCHH
Confidence 67899999999998876653 3456778777654321100 000000 00 0012345788999
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCccCHH
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRV 254 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~ 254 (300)
|+|+++++++...... ..+++|++.+|...+..
T Consensus 221 dva~~v~~L~s~~~~~--itG~~i~vdGg~~~~~~ 253 (259)
T 3edm_A 221 DVAGLVAFLASDDAAY--VTGACYDINGGVLFSEG 253 (259)
T ss_dssp HHHHHHHHHHSGGGTT--CCSCEEEESBCSSBC--
T ss_pred HHHHHHHHHcCccccC--ccCCEEEECCCcCCCCC
Confidence 9999999999764321 12339999998765543
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-25 Score=182.64 Aligned_cols=214 Identities=13% Similarity=0.083 Sum_probs=152.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+.+|++|||||+|+||++++++|+++| ++|++++|+++... .++ .+.++ +|+ .++++.+++.+.++|+|
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~----~~~-~~~~~-~D~--~~~~~~~~~~~~~iD~l 85 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEG---AEVTICARNEELLK----RSG-HRYVV-CDL--RKDLDLLFEKVKEVDIL 85 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHH----HTC-SEEEE-CCT--TTCHHHHHHHSCCCSEE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCHHHHH----hhC-CeEEE-eeH--HHHHHHHHHHhcCCCEE
Confidence 357899999999999999999999999 89999999853222 222 45556 999 55678888877689999
Q ss_pred EEcccccCccc----cccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhH
Q 022280 81 VNCAALSVPRV----CENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYG 152 (300)
Q Consensus 81 ih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~ 152 (300)
|||||...... ..+.++..+++|+.+++ .+ ++.+++.+.++||++||..++.+... ...|+
T Consensus 86 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~~Y~ 154 (249)
T 1o5i_A 86 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMI-KIVRNYLPAMKEKGWGRIVAITSFSVISPIEN----------LYTSN 154 (249)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------BHHHH
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEEcchHhcCCCCC----------CchHH
Confidence 99999764321 23345678899999985 44 45555667789999999988866433 67899
Q ss_pred HHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHH
Q 022280 153 KSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKII 225 (300)
Q Consensus 153 ~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 225 (300)
.||.+.+.+.+.++. ++.++||+.+.++..... ........+... .....+.+++|+|+++
T Consensus 155 ~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-----~~~~~~~~~~~~-------~p~~~~~~~~dvA~~i 222 (249)
T 1o5i_A 155 SARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKEL-----LSEEKKKQVESQ-------IPMRRMAKPEEIASVV 222 (249)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHH-----SCHHHHHHHHTT-------STTSSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCccccc-----chhhHHHHHHhc-------CCCCCCcCHHHHHHHH
Confidence 999999998876543 568899999987642100 001111011111 1235688999999999
Q ss_pred HHHHhccccccccccceeeecCCCc
Q 022280 226 LALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++++...... ..+++|++.+|..
T Consensus 223 ~~l~s~~~~~--~tG~~~~vdgG~~ 245 (249)
T 1o5i_A 223 AFLCSEKASY--LTGQTIVVDGGLS 245 (249)
T ss_dssp HHHHSGGGTT--CCSCEEEESTTCC
T ss_pred HHHcCccccC--CCCCEEEECCCcc
Confidence 9999763221 1133899988753
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=176.65 Aligned_cols=218 Identities=14% Similarity=0.100 Sum_probs=157.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+|++|||||+++||+++++.|+++| ++|++.+|+.+.... .....+..+++|++|++++++++++++++|++|
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~G---a~Vv~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLV 83 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAAIAMQFAELG---AEVVALGLDADGVHA---PRHPRIRREELDITDSQRLQRLFEALPRLDVLV 83 (242)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSTTSTTS---CCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHhh---hhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 57999999999999999999999999 899999998765543 234567789999999999999999999999999
Q ss_pred EcccccCcc--ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHH
Q 022280 82 NCAALSVPR--VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 82 h~a~~~~~~--~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~ 156 (300)
||||+..+. .+.+.++..+++|+.|++ .+.+++.. .+.++||++||.....+.+. ...|+.||.
T Consensus 84 NNAGi~~~~~~~~~~~w~~~~~vNl~g~~-~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~----------~~~Y~asKa 152 (242)
T 4b79_A 84 NNAGISRDREEYDLATFERVLRLNLSAAM-LASQLARPLLAQRGGSILNIASMYSTFGSAD----------RPAYSASKG 152 (242)
T ss_dssp ECCCCCCGGGGGSHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHCEEEEEECCGGGTSCCSS----------CHHHHHHHH
T ss_pred ECCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCeEEEEeeccccCCCCC----------CHHHHHHHH
Confidence 999986532 234567889999999996 55554432 23369999999887655443 678999999
Q ss_pred HHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHH
Q 022280 157 AAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALT 229 (300)
Q Consensus 157 ~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 229 (300)
.+..+.+.++. ++..+-|+.|--|-.... .. ......... ... ++..+..++|+|.++++|+
T Consensus 153 av~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~-~~--~~~~~~~~~-~~~-------PlgR~g~peeiA~~v~fLa 221 (242)
T 4b79_A 153 AIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGL-KA--DVEATRRIM-QRT-------PLARWGEAPEVASAAAFLC 221 (242)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCCC------CC--CHHHHHHHH-HTC-------TTCSCBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcc-cC--CHHHHHHHH-hcC-------CCCCCcCHHHHHHHHHHHh
Confidence 99998887654 345677777754421110 00 012222222 111 3446788999999999999
Q ss_pred hccccccccccceeeecCCC
Q 022280 230 NRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 230 ~~~~~~~~~~~~i~ni~~~~ 249 (300)
...... -.++++.+.+|-
T Consensus 222 Sd~a~~--iTG~~l~VDGG~ 239 (242)
T 4b79_A 222 GPGASF--VTGAVLAVDGGY 239 (242)
T ss_dssp SGGGTT--CCSCEEEESTTG
T ss_pred CchhcC--ccCceEEECccH
Confidence 653221 113388888773
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=181.88 Aligned_cols=227 Identities=14% Similarity=0.092 Sum_probs=156.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC----------------chhhhh---hcCCCceeEEEeecC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP----------------LPQLLL---DALPHSFVFFDVDLK 62 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~----------------~~~~~~---~~~~~~~~~~~~D~~ 62 (300)
.+|++|||||+|+||+++++.|+++| ++|++++|+.+ ....+. ...+..+.++++|++
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEG---ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 46899999999999999999999999 89999988622 122221 223456788999999
Q ss_pred CchhHHHHHH----hcCCCCEEEEcccccCccc-----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeec
Q 022280 63 SGSGFDAVAL----KFGQPDVVVNCAALSVPRV-----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLST 128 (300)
Q Consensus 63 ~~~~~~~~~~----~~~~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS 128 (300)
|+++++.+++ .++++|+||||||+..... +.+.++..+++|+.+++ .+++++.. .+ .++||++||
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~~g~iv~isS 165 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVW-KTVKAGVPHMIAGGRGGSIILTSS 165 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTSCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhCCCCcEEEEECc
Confidence 9998766654 5679999999999764321 33456788999999996 77776543 23 459999999
Q ss_pred cccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCC---------CCCchH
Q 022280 129 DQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPV---------PKSLPI 192 (300)
Q Consensus 129 ~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~---------~~~~~~ 192 (300)
...+.+.+. ...|+.||.+++.+.+.++. ++..++|+.|..+...... ....+.
T Consensus 166 ~~~~~~~~~----------~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 235 (286)
T 3uve_A 166 VGGLKAYPH----------TGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPD 235 (286)
T ss_dssp GGGTSCCTT----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHH
T ss_pred hhhccCCCC----------ccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccchh
Confidence 888765443 67899999999998886643 4577999998876432100 000000
Q ss_pred HHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 193 QWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
. ...... ......+.+.+++|+|+++++++...... ..++++++.+|..+
T Consensus 236 ~-~~~~~~------~~~~~p~r~~~p~dvA~~v~fL~s~~a~~--itG~~i~vdGG~~l 285 (286)
T 3uve_A 236 D-MAPICQ------MFHTLPIPWVEPIDISNAVLFFASDEARY--ITGVTLPIDAGSCL 285 (286)
T ss_dssp H-HHHHHH------TTCSSSCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGG
T ss_pred h-HHHHHH------hhhccCCCcCCHHHHHHHHHHHcCccccC--CcCCEEeECCcccc
Confidence 0 000000 01111157889999999999999764221 11338999998654
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-25 Score=182.73 Aligned_cols=214 Identities=19% Similarity=0.169 Sum_probs=149.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+++....+ ..+++|++|+++++.+++ .+++
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~--------~~~~~D~~~~~~~~~~~~~~~~~~g~ 81 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADG---HKVAVTHRGSGAPKGL--------FGVEVDVTDSDAVDRAFTAVEEHQGP 81 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSSCCCTTS--------EEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHHHHHh--------cCeeccCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999999999 8999999986554322 137899999988766654 4578
Q ss_pred CCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+||||||..... .+.+.++..+++|+.+++ ++++++. +.+.++||++||...+.+... .
T Consensus 82 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~ 150 (247)
T 1uzm_A 82 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF-RVAQRASRSMQRNKFGRMIFIGSVSGLWGIGN----------Q 150 (247)
T ss_dssp CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEEECCCCC-----C----------C
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCCEEEEECCHhhccCCCC----------C
Confidence 99999999976432 233456788999999996 7777654 356679999999876544322 6
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.||.+.+.+.+.++. ++.+++|+.+..+.... ...... ..+.. ......+.+++|+
T Consensus 151 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-----~~~~~~-~~~~~-------~~p~~~~~~~~dv 217 (247)
T 1uzm_A 151 ANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA-----LDERIQ-QGALQ-------FIPAKRVGTPAEV 217 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-----SCHHHH-HHHGG-------GCTTCSCBCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhh-----cCHHHH-HHHHh-------cCCCCCCcCHHHH
Confidence 7899999999998876543 56789998886542100 001111 11101 0123468999999
Q ss_pred HHHHHHHHhccccccccccceeeecCCCcc
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
|+++++++...... ..++++++.+|..+
T Consensus 218 A~~~~~l~s~~~~~--~~G~~i~vdgG~~~ 245 (247)
T 1uzm_A 218 AGVVSFLASEDASY--ISGAVIPVDGGMGM 245 (247)
T ss_dssp HHHHHHHHSGGGTT--CCSCEEEESTTTTC
T ss_pred HHHHHHHcCccccC--CcCCEEEECCCccc
Confidence 99999999753211 12338999888643
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-25 Score=182.84 Aligned_cols=195 Identities=18% Similarity=0.123 Sum_probs=144.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+.+....+.+.++..+.++.+|++|.++++.+++ .+++
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 77 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERG---HQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGL 77 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 778999999999999999999999999 899999998766665555444567889999999998766554 4578
Q ss_pred CCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+||||||..... .+.+.++..+++|+.|++ .+++++.. .+ ++||++||...+.+... .
T Consensus 78 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~-~~iv~isS~~~~~~~~~----------~ 145 (235)
T 3l6e_A 78 PELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTI-LVAQQTVRLIGERG-GVLANVLSSAAQVGKAN----------E 145 (235)
T ss_dssp CSEEEEECCCC------CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHTTTC-EEEEEECCEECCSSCSS----------H
T ss_pred CcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcC-CEEEEEeCHHhcCCCCC----------C
Confidence 99999999986432 234456788999999996 77776643 33 39999999877655433 5
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.||.+.+.+.+.++. ++..++|+.+-.+.... .. . .....+++++|+
T Consensus 146 ~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----------~~----~--------~~~~~~~~pedv 203 (235)
T 3l6e_A 146 SLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDN----------TD----H--------VDPSGFMTPEDA 203 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC---------------------------------CBCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhc----------cC----C--------CCCcCCCCHHHH
Confidence 7899999999999887653 45678888885442110 00 0 011257899999
Q ss_pred HHHHHHHHhcc
Q 022280 222 VKIILALTNRW 232 (300)
Q Consensus 222 a~~~~~~~~~~ 232 (300)
|++++++++.+
T Consensus 204 A~~v~~l~~~~ 214 (235)
T 3l6e_A 204 AAYMLDALEAR 214 (235)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHHhCC
Confidence 99999999864
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=182.56 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=158.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
++|++|||||+|+||++++++|+++| ++|++++|+++....+.+.+. .+.++++|++|+++++.+++ .++++
T Consensus 8 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 83 (270)
T 1yde_A 8 AGKVVVVTGGGRGIGAGIVRAFVNSG---ARVVICDKDESGGRALEQELP-GAVFILCDVTQEDDVKTLVSETIRRFGRL 83 (270)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCT-TEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhc-CCeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 899999998665555554443 36778999999998766654 46789
Q ss_pred CEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||..... .+.+.++..+++|+.+++ ++++++.. .+.++||++||...+.+... ..
T Consensus 84 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~ 152 (270)
T 1yde_A 84 DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTY-TLTKLALPYLRKSQGNVINISSLVGAIGQAQ----------AV 152 (270)
T ss_dssp CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEECCHHHHHCCTT----------CH
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHCCCEEEEEcCccccCCCCC----------Cc
Confidence 9999999975421 122345788999999996 87777653 23479999999765543322 56
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCC-CCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISP-VPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
.|+.||.+.+.+.+.++ .++.++||+.++++..... ....-......... . ......+.+++|+
T Consensus 153 ~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-~-------~~p~~r~~~p~dv 224 (270)
T 1yde_A 153 PYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGM-L-------AQPLGRMGQPAEV 224 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHH-H-------TSTTSSCBCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHh-h-------cCCCCCCcCHHHH
Confidence 89999999999887754 4678899999987631100 00000000011000 0 0123457899999
Q ss_pred HHHHHHHHhccccccccccceeeecCCCccCHHH
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e 255 (300)
|+++++++.. .. -..++++++.+|..+.+..
T Consensus 225 a~~v~~L~s~-~~--~itG~~i~vdGG~~~~~~~ 255 (270)
T 1yde_A 225 GAAAVFLASE-AN--FCTGIELLVTGGAELGYGC 255 (270)
T ss_dssp HHHHHHHHHH-CT--TCCSCEEEESTTTTSCC--
T ss_pred HHHHHHHccc-CC--CcCCCEEEECCCeecccCc
Confidence 9999999875 11 1123489999987665443
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=181.79 Aligned_cols=214 Identities=15% Similarity=0.175 Sum_probs=151.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
|++|++|||||+|+||++++++|+++| ++|++.+|++++.. .+.++++|++|+++++++++ .+++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~--------~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 87 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAG---DKVAITYRSGEPPE--------GFLAVKCDITDTEQVEQAYKEIEETHGP 87 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSCCCT--------TSEEEECCTTSHHHHHHHHHHHHHHTCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHhhc--------cceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999 89999999865432 25668999999998766554 4678
Q ss_pred CCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|+|||+||..... .+.+.++..+++|+.+++ ++++++. +.+.++||++||...+.+.+. .
T Consensus 88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------~ 156 (253)
T 2nm0_A 88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTF-RVVKRANRAMLRAKKGRVVLISSVVGLLGSAG----------Q 156 (253)
T ss_dssp CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHH-HHHHHHHHHHHHHTCEEEEEECCCCCCCCHHH----------H
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEECchhhCCCCCC----------c
Confidence 99999999976432 244567889999999996 7766554 346779999999877654322 5
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.||.+.+.+.+.++. ++.+++|+.+..+.... . ......... .. .....+++++|+
T Consensus 157 ~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-~----~~~~~~~~~-~~-------~p~~~~~~p~dv 223 (253)
T 2nm0_A 157 ANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV-L----TDEQRANIV-SQ-------VPLGRYARPEEI 223 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC--------------CHHHHH-TT-------CTTCSCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh-c----CHHHHHHHH-hc-------CCCCCCcCHHHH
Confidence 6899999999998876542 46779998886553211 0 000111111 11 123458899999
Q ss_pred HHHHHHHHhccccccccccceeeecCCCcc
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
|+++++++...... ..++++++.+|..+
T Consensus 224 A~~i~~l~s~~~~~--~tG~~i~vdGG~~~ 251 (253)
T 2nm0_A 224 AATVRFLASDDASY--ITGAVIPVDGGLGM 251 (253)
T ss_dssp HHHHHHHHSGGGTT--CCSCEEEESTTTTC
T ss_pred HHHHHHHhCccccC--CcCcEEEECCcccc
Confidence 99999999764321 11338999887543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-25 Score=186.23 Aligned_cols=222 Identities=14% Similarity=0.064 Sum_probs=158.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|.+|++|||||+|+||++++++|+++| ++|++++|+.+....+.+. .+..+.++++|++|+++++++++ .
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 106 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAG---AQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGE 106 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999 8999999987766554433 24567789999999998766655 4
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccC-CeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKE-NLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~-~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+||||||...... ..+.++..+++|+.|++ .+++++.. .+. ++||++||...+....
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~-------- 177 (276)
T 3r1i_A 107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVF-LTAQAAARAMVDQGLGGTIITTASMSGHIINI-------- 177 (276)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTSCEEEEEECCGGGTSCCC--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCcEEEEECchHhcccCC--------
Confidence 679999999999875432 23345677899999996 77766543 332 6899999987654321
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
+.+...|+.||.+.+.+.+.++. ++..++|+.|..+.... .. .+. ..... ......+.+
T Consensus 178 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~-----~~-~~~-~~~~~-------~~p~~r~~~ 243 (276)
T 3r1i_A 178 PQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEP-----LA-DYH-ALWEP-------KIPLGRMGR 243 (276)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGG-----GG-GGH-HHHGG-------GSTTSSCBC
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccc-----ch-HHH-HHHHh-------cCCCCCCcC
Confidence 12356899999999998887653 45778999887654211 11 111 11111 113456889
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++|+|+++++++...... ..++++++.+|..
T Consensus 244 pedvA~~v~fL~s~~~~~--itG~~i~vdGG~~ 274 (276)
T 3r1i_A 244 PEELTGLYLYLASAASSY--MTGSDIVIDGGYT 274 (276)
T ss_dssp GGGSHHHHHHHHSGGGTT--CCSCEEEESTTTT
T ss_pred HHHHHHHHHHHcCccccC--ccCcEEEECcCcc
Confidence 999999999999864321 1133899988754
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=183.54 Aligned_cols=227 Identities=15% Similarity=0.095 Sum_probs=157.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC------------chhhhh---hcCCCceeEEEeecCCchh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP------------LPQLLL---DALPHSFVFFDVDLKSGSG 66 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~------------~~~~~~---~~~~~~~~~~~~D~~~~~~ 66 (300)
.+|++|||||+|+||+++++.|+++| ++|++++|+++ ...... ...+..+.++.+|++|.++
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 103 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREG---ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDA 103 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 46899999999999999999999999 89999888732 122221 2235677889999999998
Q ss_pred HHHHHH----hcCCCCEEEEcccccCccc-----cccChhhhhhcccccchHHHHHhhhh----c-cCCeEEEeeccccc
Q 022280 67 FDAVAL----KFGQPDVVVNCAALSVPRV-----CENDPDSAMSINVPSSLVNWLSSFTE----N-KENLLIHLSTDQVY 132 (300)
Q Consensus 67 ~~~~~~----~~~~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~~l~~~~~~----~-~~~~~v~~SS~~~~ 132 (300)
++.+++ .++++|+||||||...... +.+.++..+++|+.|++ .+++++.. . +.++||++||...+
T Consensus 104 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~~g~Iv~isS~~~~ 182 (299)
T 3t7c_A 104 MQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAW-ITARVAIPHIMAGKRGGSIVFTSSIGGL 182 (299)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCcEEEEECChhhc
Confidence 766654 5679999999999764322 33456788999999996 77776543 2 35699999998877
Q ss_pred cCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCC---------CCCchHHHHH
Q 022280 133 EGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPV---------PKSLPIQWID 196 (300)
Q Consensus 133 ~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~---------~~~~~~~~~~ 196 (300)
.+... ...|+.||.+++.+.+.++. ++..++|+.|..+...... .......+..
T Consensus 183 ~~~~~----------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (299)
T 3t7c_A 183 RGAEN----------IGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQV 252 (299)
T ss_dssp SCCTT----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHH
T ss_pred cCCCC----------cchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHH
Confidence 65443 67899999999998876643 4577999998876432100 0000000000
Q ss_pred HHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 197 SVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
... ........+.+++|+|+++++++...... ..++++++.+|..+
T Consensus 253 -~~~------~~~~~p~r~~~pedvA~~v~fL~s~~a~~--itG~~i~vdGG~~l 298 (299)
T 3t7c_A 253 -ASR------QMHVLPIPYVEPADISNAILFLVSDDARY--ITGVSLPVDGGALL 298 (299)
T ss_dssp -HHH------HHSSSSCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGG
T ss_pred -Hhh------hhcccCcCCCCHHHHHHHHHHHhCccccc--CcCCEEeeCCCccc
Confidence 000 00001146789999999999999764321 11338999998654
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-25 Score=189.14 Aligned_cols=220 Identities=13% Similarity=0.145 Sum_probs=161.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh---cCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK---FGQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~d 78 (300)
.++++|||||+|+||++++++|+++| ++|++++|+.+....+.+.++..+.++++|++|.++++++++. ++++|
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id 105 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADG---LGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLR 105 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 35789999999999999999999999 8999999997777777666677888899999999988777654 46799
Q ss_pred EEEEc-ccccCcc---------ccccChhhhhhcccccchHHHHHhhhh----------ccCCeEEEeeccccccCCCCC
Q 022280 79 VVVNC-AALSVPR---------VCENDPDSAMSINVPSSLVNWLSSFTE----------NKENLLIHLSTDQVYEGVKSF 138 (300)
Q Consensus 79 ~vih~-a~~~~~~---------~~~~~~~~~~~~nv~~~~~~l~~~~~~----------~~~~~~v~~SS~~~~~~~~~~ 138 (300)
++||+ |+..... ...+.++..+++|+.+++ ++++++.. .+.++||++||...+.+...
T Consensus 106 ~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~- 183 (281)
T 3ppi_A 106 YAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTY-NVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIG- 183 (281)
T ss_dssp EEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCCTT-
T ss_pred eEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhhcccccCCCeEEEEEecccccCCCCC-
Confidence 99999 5543321 122235788999999996 77776653 23459999999888766443
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCc
Q 022280 139 YKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE 211 (300)
Q Consensus 139 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
...|+.||.+++.+.+.++. ++..++|+.|..+.... .......... ... .
T Consensus 184 ---------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-----~~~~~~~~~~-~~~-------~ 241 (281)
T 3ppi_A 184 ---------QTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMES-----VGEEALAKFA-ANI-------P 241 (281)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-----TCHHHHHHHH-HTC-------C
T ss_pred ---------CcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhc-----ccHHHHHHHH-hcC-------C
Confidence 67899999999998876643 45678888776432110 1111222211 111 1
Q ss_pred c-cCceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 212 C-RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 212 ~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
. ..+.+++|+|++++++++.....|+ ++++.+|..++
T Consensus 242 ~~~~~~~pedvA~~v~~l~s~~~~tG~----~i~vdGG~~~~ 279 (281)
T 3ppi_A 242 FPKRLGTPDEFADAAAFLLTNGYINGE----VMRLDGAQRFT 279 (281)
T ss_dssp SSSSCBCHHHHHHHHHHHHHCSSCCSC----EEEESTTCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCcCCc----EEEECCCcccC
Confidence 2 4688999999999999987555555 89999987654
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=181.18 Aligned_cols=217 Identities=14% Similarity=0.096 Sum_probs=155.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecC-CCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH-HSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~-r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
+++++|||||+|+||++++++|+++| ++|++.. |+.+......+ ..+..+.++.+|++|.++++++++ .
T Consensus 25 ~~k~vlVTGas~gIG~~la~~l~~~G---~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 101 (267)
T 4iiu_A 25 MSRSVLVTGASKGIGRAIARQLAADG---FNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQ 101 (267)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999 8886655 44333333322 224677889999999998766554 4
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh-----hccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT-----ENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+||||||...... +.+.++..+++|+.+++ ++++.+. +.+.++||++||...+.+...
T Consensus 102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 173 (267)
T 4iiu_A 102 HGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFY-NVIQPCIMPMIGARQGGRIITLSSVSGVMGNRG------- 173 (267)
T ss_dssp HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTSCEEEEEECCHHHHHCCTT-------
T ss_pred hCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCcEEEEEcchHhccCCCC-------
Confidence 579999999999865422 33456788999999996 8777763 455679999999887655433
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+.+.+.+.++. ++.+++|+.+..+.... . ........ .. .....+.+
T Consensus 174 ---~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-----~-~~~~~~~~-~~-------~p~~~~~~ 236 (267)
T 4iiu_A 174 ---QVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEM-----E-ESALKEAM-SM-------IPMKRMGQ 236 (267)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCC-----C-HHHHHHHH-HT-------CTTCSCBC
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCcccc-----c-HHHHHHHH-hc-------CCCCCCcC
Confidence 67899999988887776543 46779999998764321 1 12232222 11 12346789
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
++|+|+++++++...... ..++++++.+|
T Consensus 237 ~edva~~~~~L~s~~~~~--itG~~i~vdGG 265 (267)
T 4iiu_A 237 AEEVAGLASYLMSDIAGY--VTRQVISINGG 265 (267)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTT
T ss_pred HHHHHHHHHHHhCCcccC--ccCCEEEeCCC
Confidence 999999999999763321 11338999886
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=183.91 Aligned_cols=219 Identities=16% Similarity=0.074 Sum_probs=154.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch-hhh---hhcCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-QLL---LDALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
++|+||||||+|+||++++++|+++| ++|++++|+.+.. ..+ ....+..+.++++|++|.+++.++++ .
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 104 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMG---LKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQS 104 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 46799999999999999999999999 8999999964332 222 22335678889999999998766654 4
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||...... +.+.++..+++|+.+++ ++++.+. +.+.++||++||...+.+...
T Consensus 105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 175 (271)
T 4iin_A 105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAF-IGCREALKVMSKSRFGSVVNVASIIGERGNMG-------- 175 (271)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT--------
T ss_pred cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHH-HHHHHHHHHHhhcCCCEEEEEechhhcCCCCC--------
Confidence 578999999999865432 23456788999999996 6666554 456679999999887655433
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+++.+.+.++. ++..++|+.+..+.... ...... ...........+.++
T Consensus 176 --~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-----~~~~~~--------~~~~~~~~~~~~~~p 240 (271)
T 4iin_A 176 --QTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNAN-----LKDELK--------ADYVKNIPLNRLGSA 240 (271)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-------------------------CGGGCTTCSCBCH
T ss_pred --chHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhh-----hcHHHH--------HHHHhcCCcCCCcCH
Confidence 67899999999998876643 45678888886553210 000000 000111245678999
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+|+++++++...... ..++++++.+|.
T Consensus 241 ~dvA~~i~~l~s~~~~~--itG~~i~vdGG~ 269 (271)
T 4iin_A 241 KEVAEAVAFLLSDHSSY--ITGETLKVNGGL 269 (271)
T ss_dssp HHHHHHHHHHHSGGGTT--CCSCEEEESTTS
T ss_pred HHHHHHHHHHhCCCcCC--CcCCEEEeCCCe
Confidence 99999999999764321 123389998875
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=185.44 Aligned_cols=224 Identities=14% Similarity=0.174 Sum_probs=158.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHHh---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVALK--- 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~--- 73 (300)
.+|++|||||+|+||++++++|+++|...++|++.+|+.+....+.+.+ +..+.++.+|++|+++++.+++.
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 111 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ 111 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999921128999999876655544332 35677899999999998888764
Q ss_pred -cCCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCC
Q 022280 74 -FGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 74 -~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
++++|+||||||.... ..+.+.++..+++|+.|++ .+++++ ++.+.++||++||...+.+...
T Consensus 112 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~------ 184 (287)
T 3rku_A 112 EFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALI-NITQAVLPIFQAKNSGDIVNLGSIAGRDAYPT------ 184 (287)
T ss_dssp GGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEECCGGGTSCCTT------
T ss_pred hcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCeEEEECChhhcCCCCC------
Confidence 4689999999997642 1233456788999999996 777776 4566779999999887655433
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+++.+.+.++. ++..++|+.|..+...... .... ....... ....++
T Consensus 185 ----~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~-~~~~-~~~~~~~-----------~~~~p~ 247 (287)
T 3rku_A 185 ----GSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRY-RGNE-EQAKNVY-----------KDTTPL 247 (287)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHT-TTCH-HHHHHHH-----------TTSCCE
T ss_pred ----CchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccc-cCcH-HHHHHhh-----------cccCCC
Confidence 67899999999998886643 4677999988764210000 0000 0111111 112346
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
.++|+|+++++++...... ..++++++.+++..
T Consensus 248 ~pedvA~~v~~l~s~~~~~--i~g~~i~v~~g~~~ 280 (287)
T 3rku_A 248 MADDVADLIVYATSRKQNT--VIADTLIFPTNQAS 280 (287)
T ss_dssp EHHHHHHHHHHHHTSCTTE--EEEEEEEEETTEEE
T ss_pred CHHHHHHHHHHHhCCCCCe--EecceEEeeCCCCC
Confidence 8999999999999874321 12337888877643
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=183.59 Aligned_cols=228 Identities=14% Similarity=0.093 Sum_probs=155.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-------------Cchhhhh---hcCCCceeEEEeecCCch
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-------------PLPQLLL---DALPHSFVFFDVDLKSGS 65 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-------------~~~~~~~---~~~~~~~~~~~~D~~~~~ 65 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+. +...... ...+..+.++.+|++|.+
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEG---ADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcC---CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 46899999999999999999999999 8999988842 1222221 223456778999999999
Q ss_pred hHHHHHH----hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hcc-CCeEEEeeccccc
Q 022280 66 GFDAVAL----KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENK-ENLLIHLSTDQVY 132 (300)
Q Consensus 66 ~~~~~~~----~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~ 132 (300)
+++++++ .++++|++|||||..... .+.+.++..+++|+.|++ .+++++. +.+ .++||++||...+
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~~g~iv~isS~~~~ 165 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTW-NTVMAGAPRIIEGGRGGSIILISSAAGM 165 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHH-HHHHHHHHHHHhcCCCCEEEEEccHhhC
Confidence 8766654 467899999999987542 233456788999999996 7766643 333 4699999998887
Q ss_pred cCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCc-
Q 022280 133 EGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK- 204 (300)
Q Consensus 133 ~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~- 204 (300)
.+.+. ...|+.||.+++.+.+.++. ++..++|+.+..+.... ....... ........
T Consensus 166 ~~~~~----------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----~~~~~~~-~~~~~~~~~ 230 (277)
T 3tsc_A 166 KMQPF----------MIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSG----DMVTAVG-QAMETNPQL 230 (277)
T ss_dssp SCCSS----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSH----HHHHHHH-HHHHTCGGG
T ss_pred CCCCC----------chhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccc----hhhhhhh-hcccccHHH
Confidence 65443 67899999999998886643 45778888887653210 0000011 11101111
Q ss_pred eeeccC-cccCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 205 VEFFHD-ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 205 ~~~~~~-~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
...... ....+.+++|+|+++++++...... ..++++++.+|..
T Consensus 231 ~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~--itG~~i~vdGG~~ 275 (277)
T 3tsc_A 231 SHVLTPFLPDWVAEPEDIADTVCWLASDESRK--VTAAQIPVDQGST 275 (277)
T ss_dssp TTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGG
T ss_pred HHHhhhccCCCCCCHHHHHHHHHHHhCccccC--CcCCEEeeCCCcc
Confidence 011111 1125889999999999999764321 1133899988753
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=181.83 Aligned_cols=221 Identities=17% Similarity=0.164 Sum_probs=156.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecC-CCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH-HSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~-r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.+++||||||+|+||++++++|+++| ++|++.+ |+.+....... ..+..+.++.+|++|.++++.+++ .
T Consensus 12 ~~k~vlITGas~giG~~ia~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (256)
T 3ezl_A 12 SQRIAYVTGGMGGIGTSICQRLHKDG---FRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE 88 (256)
T ss_dssp -CEEEEETTTTSHHHHHHHHHHHHTT---EEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 8998887 44444433322 234567789999999988666554 4
Q ss_pred cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+|||+||..... .+.+.++..+++|+.+++ ++++++ ++.+.++||++||...+.+...
T Consensus 89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 159 (256)
T 3ezl_A 89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLF-NVTKQVIDGMVERGWGRIINISSVNGQKGQFG-------- 159 (256)
T ss_dssp TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCCCGGGSCSC--------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCEEEEEcchhhccCCCC--------
Confidence 57899999999986532 233456778999999986 665554 4566779999999887765443
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+.+.+.+.++. ++.+++|+.+..+.... ....+...... ......+.++
T Consensus 160 --~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-----~~~~~~~~~~~--------~~~~~~~~~~ 224 (256)
T 3ezl_A 160 --QTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA-----IRPDVLEKIVA--------TIPVRRLGSP 224 (256)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-----SCHHHHHHHHH--------HSTTSSCBCH
T ss_pred --CcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccc-----cCHHHHHHHHh--------cCCCCCCcCH
Confidence 67999999999998876653 45678888886543211 11222222221 1134567899
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
+|+|+++++++...... ..++++++.+|..+
T Consensus 225 ~dva~~~~~l~s~~~~~--~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 225 DEIGSIVAWLASEESGF--STGADFSLNGGLHM 255 (256)
T ss_dssp HHHHHHHHHHHSGGGTT--CCSCEEEESTTSCC
T ss_pred HHHHHHHHHHhCCcccC--CcCcEEEECCCEeC
Confidence 99999999999653221 12348999988654
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=177.63 Aligned_cols=212 Identities=12% Similarity=0.146 Sum_probs=154.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~~d 78 (300)
.|+||||||+++||+++++.|+++| ++|++.+|+++....+.++ ...+.++++|++|++++++++ ++++++|
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~G---a~V~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iD 77 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAG---DKVCFIDIDEKRSADFAKE-RPNLFYFHGDVADPLTLKKFVEYAMEKLQRID 77 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHTT-CTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHh-cCCEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999999999999 8999999987666655555 345677999999999866654 5678999
Q ss_pred EEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 79 VVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 79 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
++|||||...... +.+.++..+++|+.|++ .+.+++.. .+-+++|++||...+.+.+. ...|
T Consensus 78 iLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~-~~~~~~~~~m~~~~G~IInisS~~~~~~~~~----------~~~Y 146 (247)
T 3ged_A 78 VLVNNACRGSKGILSSLLYEEFDYILSVGLKAPY-ELSRLCRDELIKNKGRIINIASTRAFQSEPD----------SEAY 146 (247)
T ss_dssp EEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEECCGGGTSCCTT----------CHHH
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhhcCCcEEEEeecccccCCCC----------CHHH
Confidence 9999999865432 34467889999999996 66555443 23369999999887765544 6789
Q ss_pred HHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHH
Q 022280 152 GKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKII 225 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 225 (300)
+.||..+..+.+.++. ++..+-||.+--+.. ... ..+.. .. -++..+..++|+|.++
T Consensus 147 ~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~-----~~~----~~~~~-~~-------~Pl~R~g~pediA~~v 209 (247)
T 3ged_A 147 ASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQ-----QEF----TQEDC-AA-------IPAGKVGTPKDISNMV 209 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC--------C----CHHHH-HT-------STTSSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCc-----HHH----HHHHH-hc-------CCCCCCcCHHHHHHHH
Confidence 9999999998876654 334566666532211 111 11111 11 1344678899999999
Q ss_pred HHHHhccccccccccceeeecCCCc
Q 022280 226 LALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++|++..-..|+ ++.+.+|..
T Consensus 210 ~fL~s~~~iTG~----~i~VDGG~s 230 (247)
T 3ged_A 210 LFLCQQDFITGE----TIIVDGGMS 230 (247)
T ss_dssp HHHHHCSSCCSC----EEEESTTGG
T ss_pred HHHHhCCCCCCC----eEEECcCHH
Confidence 999976444444 899988743
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=180.93 Aligned_cols=218 Identities=17% Similarity=0.126 Sum_probs=153.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~ 77 (300)
.+|+||||||+|+||+++++.|+++| ++|++++|+.+... .....+++|++|.+++..+++ .++++
T Consensus 13 ~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 82 (269)
T 3vtz_A 13 TDKVAIVTGGSSGIGLAVVDALVRYG---AKVVSVSLDEKSDV-------NVSDHFKIDVTNEEEVKEAVEKTTKKYGRI 82 (269)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCC--CT-------TSSEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCchhcc-------CceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999 89999999865432 245568999999998766554 46799
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||...... ..+.++..+++|+.|++ .+++++. +.+.++||++||...+.+... ..
T Consensus 83 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~ 151 (269)
T 3vtz_A 83 DILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSY-LMAKYTIPVMLAIGHGSIINIASVQSYAATKN----------AA 151 (269)
T ss_dssp CEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSBCTT----------CH
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCCEEEEECchhhccCCCC----------Ch
Confidence 99999999865432 22345678899999996 7766654 356679999999998876544 67
Q ss_pred hhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCC------CCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 150 VYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISP------VPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
.|+.||.+++.+.+.++. ++..++|+.|.++..... .............. .....+.+.+
T Consensus 152 ~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~p~~r~~~ 223 (269)
T 3vtz_A 152 AYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWG--------RQHPMGRIGR 223 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHH--------HHSTTSSCBC
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHH--------hcCCCCCCcC
Confidence 999999999998887643 456788888875421000 00000000010000 0124567889
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++|+|+++++++...... ..++++++++|..
T Consensus 224 pedvA~~v~~L~s~~~~~--itG~~i~vdGG~~ 254 (269)
T 3vtz_A 224 PEEVAEVVAFLASDRSSF--ITGACLTVDGGLL 254 (269)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhCCccCC--CcCcEEEECCCcc
Confidence 999999999999764321 1234899999864
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=183.07 Aligned_cols=228 Identities=15% Similarity=0.065 Sum_probs=160.0
Q ss_pred CCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCCCchh---hhhhcCCCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ---LLLDALPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
.+|+||||||+ |+||++++++|+++| ++|++++|+..... .+.... ..+.++.+|++|.++++.+++
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREG---AELAFTYVGDRFKDRITEFAAEF-GSELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHHHHT-TCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcC---CCEEEEecchhhHHHHHHHHHHc-CCcEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999999 999999999999999 89999998843322 222333 347789999999998766664
Q ss_pred hcCCCCEEEEcccccCcc---------ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR---------VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~---------~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
.++++|+||||||+.... .+.+.++..+++|+.+++ .+++++... ..++||++||...+.+...
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 163 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFP-ALAKAALPMLSDDASLLTLSYLGAERAIPN---- 163 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHH-HHHHHHGGGEEEEEEEEEEECGGGTSBCTT----
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHH-HHHHHHHHHhccCceEEEEeccccccCCCC----
Confidence 457899999999986531 233456778999999996 888887663 2348999999887765443
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+++.+.+.++ .++.+++|+.|..+..... .....+..... . ......
T Consensus 164 ------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~---~~~~~~~~~~~-~-------~~~~~~ 226 (271)
T 3ek2_A 164 ------YNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI---KSFGKILDFVE-S-------NSPLKR 226 (271)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC---HHHHHHHHHHH-H-------HSTTSS
T ss_pred ------ccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc---cchHHHHHHHH-h-------cCCcCC
Confidence 6799999999999887664 3567899998876532110 00111111111 1 113346
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHH
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMA 257 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~ 257 (300)
+.+++|+|+++++++...... ..++++++.+|..+++.+++
T Consensus 227 ~~~pedva~~i~~l~s~~~~~--~tG~~i~vdgG~~~~~~~~~ 267 (271)
T 3ek2_A 227 NVTIEQVGNAGAFLLSDLASG--VTAEVMHVDSGFNAVVGGMA 267 (271)
T ss_dssp CCCHHHHHHHHHHHHSGGGTT--CCSEEEEESTTGGGBCCCC-
T ss_pred CCCHHHHHHHHHHHcCcccCC--eeeeEEEECCCeeeehhhhh
Confidence 789999999999999863221 12349999999888776654
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=178.72 Aligned_cols=222 Identities=16% Similarity=0.090 Sum_probs=156.4
Q ss_pred CCCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCCC---chhhhhhcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTP---LPQLLLDALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|.+|++|||||+ |+||+++++.|+++| ++|++++|+.+ ....+....+ .+.++.+|++|+++++.+++
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~ 79 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQG---ATLAFTYLNESLEKRVRPIAQELN-SPYVYELDVSKEEHFKSLYNSVK 79 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT---CEEEEEESSTTTHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEcCCCCHHHHHHHHHHHH
Confidence 346899999999 999999999999999 89999999865 2222323223 36778999999998766654
Q ss_pred -hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
.++++|+||||||.... ..+.+.++..+++|+.+++ .+++++... ..++||++||...+.+.+.
T Consensus 80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 154 (275)
T 2pd4_A 80 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLI-ELTNTLKPLLNNGASVLTLSYLGSTKYMAH---- 154 (275)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHGGGEEEEEEEEEEECGGGTSBCTT----
T ss_pred HHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHhccCCEEEEEecchhcCCCCC----
Confidence 45789999999997643 2233456788999999996 888888764 1259999999877654332
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+.+.+.+.++ .++.+++|+.|.++.... .+ ....+..... .. .....
T Consensus 155 ------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-~~--~~~~~~~~~~-~~-------~p~~~ 217 (275)
T 2pd4_A 155 ------YNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSG-IA--DFRMILKWNE-IN-------APLRK 217 (275)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGG-ST--THHHHHHHHH-HH-------STTSS
T ss_pred ------chhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhh-cc--ccHHHHHHHH-hc-------CCcCC
Confidence 5689999999999887653 356889999998764211 10 0112222111 11 12235
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+.+++|+|+++++++...... ..+.++++.+|..
T Consensus 218 ~~~p~dva~~~~~l~s~~~~~--~tG~~~~vdgg~~ 251 (275)
T 2pd4_A 218 NVSLEEVGNAGMYLLSSLSSG--VSGEVHFVDAGYH 251 (275)
T ss_dssp CCCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGG
T ss_pred CCCHHHHHHHHHHHhCccccC--CCCCEEEECCCcc
Confidence 778999999999999753221 1133888888753
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=186.49 Aligned_cols=216 Identities=17% Similarity=0.112 Sum_probs=143.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-----chhhhh---hcCCCceeEEEeecCCchhHHHHHH-
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-----LPQLLL---DALPHSFVFFDVDLKSGSGFDAVAL- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-----~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~- 72 (300)
++|++|||||+|+||++++++|+++| ++|+++.|+.. ....+. ...+..+.++++|++|.+++.++++
T Consensus 4 ~~k~vlVTGas~GIG~aia~~L~~~G---~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~ 80 (324)
T 3u9l_A 4 SKKIILITGASSGFGRLTAEALAGAG---HRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQ 80 (324)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 45789999999999999999999999 89998887631 122222 1224567889999999988766554
Q ss_pred ---hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCC-CCCCC
Q 022280 73 ---KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGV-KSFYK 140 (300)
Q Consensus 73 ---~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~-~~~~~ 140 (300)
.++++|+||||||+..... +.+.++..+++|+.|++ ++++++ ++.+.++||++||...+... +.
T Consensus 81 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~~~--- 156 (324)
T 3u9l_A 81 IIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQ-RVNRAALPHMRRQKHGLLIWISSSSSAGGTPPY--- 156 (324)
T ss_dssp HHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCCSS---
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCEEEEEecchhccCCCCc---
Confidence 5679999999999764322 23345678899999996 887777 56677899999998876432 22
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCC---CCCCchHHHHHHHHhcCCc--e-ee
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISP---VPKSLPIQWIDSVLSKGEK--V-EF 207 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~--~-~~ 207 (300)
...|+.||.+++.+.+.++. ++++++||.+.++..... .+... . ........... . .+
T Consensus 157 -------~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 227 (324)
T 3u9l_A 157 -------LAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDH-A-RQAEYEAGPNAGLGEEI 227 (324)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCH-H-HHHHHHHTTTTTHHHHH
T ss_pred -------chhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHH-H-HHHhhccccccCCHHHH
Confidence 56899999999998887643 568899999987653211 11111 1 11111100000 0 00
Q ss_pred cc---CcccCceeHHHHHHHHHHHHhccc
Q 022280 208 FH---DECRCPVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 208 ~~---~~~~~~i~v~D~a~~~~~~~~~~~ 233 (300)
.. ....+..+++|+|++++.+++.+.
T Consensus 228 ~~~~~~l~~~~~~p~~vA~aiv~~~~~~~ 256 (324)
T 3u9l_A 228 KKAFAAIVPPDADVSLVADAIVRVVGTAS 256 (324)
T ss_dssp HHHHHHTSCTTCCTHHHHHHHHHHHTSCT
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhcCCC
Confidence 00 001233689999999999998863
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=180.95 Aligned_cols=217 Identities=13% Similarity=0.125 Sum_probs=150.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeec--CCchhHHHHHH---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDL--KSGSGFDAVAL--- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~--~~~~~~~~~~~--- 72 (300)
++|++|||||+|+||+++++.|+++| ++|++.+|+.+......+.+ ...+.++.+|+ +|.++++++++
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARYG---ATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 89999999866555443322 33667789999 88887665554
Q ss_pred -hcCCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
.++++|+||||||.... ..+.+.++..+++|+.|++ .+++++ ++.+.++||++||...+.+...
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----- 161 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATF-MLTQALLPLLLKSDAGSLVFTSSSVGRQGRAN----- 161 (252)
T ss_dssp HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHTSSSCEEEEECCGGGTSCCTT-----
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHH-HHHHHHHHHHHHCCCCEEEEECChhhccCCCC-----
Confidence 46789999999997532 1223345678999999996 777776 4556679999999887655433
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcCCc------eeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCSNF------AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~~~------~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+.+.+.+.++.++ ..+.|+.+.. .+..... . ......+.
T Consensus 162 -----~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t-------------~~~~~~~-~-------~~~~~~~~ 215 (252)
T 3f1l_A 162 -----WGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRT-------------AMRASAF-P-------TEDPQKLK 215 (252)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSS-------------HHHHHHC-T-------TCCGGGSB
T ss_pred -----CchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccC-------------chhhhhC-C-------ccchhccC
Confidence 6789999999999988776432 3344444422 1222111 1 11223578
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCccCHHH
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e 255 (300)
+++|+++++++++...... ..++++++.+|...++.|
T Consensus 216 ~p~dva~~~~~L~s~~~~~--itG~~i~vdgG~~~~~~q 252 (252)
T 3f1l_A 216 TPADIMPLYLWLMGDDSRR--KTGMTFDAQPGRKPGISQ 252 (252)
T ss_dssp CTGGGHHHHHHHHSGGGTT--CCSCEEESSCC-------
T ss_pred CHHHHHHHHHHHcCccccC--CCCCEEEeCCCcCCCCCC
Confidence 8999999999999764321 123489999998766543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-24 Score=181.44 Aligned_cols=223 Identities=17% Similarity=0.061 Sum_probs=158.7
Q ss_pred CCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCCCchhhh---hhcCCCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL---LDALPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
++|++|||||+| +||+++++.|+++| ++|++++|+.+....+ .... ..+.++++|++|.++++.+++
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQG---AEVALTYLSETFKKRVDPLAESL-GVKLTVPCDVSDAESVDNMFKVLAE 104 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHHHHH-TCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 468999999997 99999999999999 8999999985433222 2222 335678999999998776665
Q ss_pred hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
.++++|+||||||+... ..+.+.++..+++|+.+++ .+++++... ..++||++||...+.+...
T Consensus 105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~g~IV~isS~~~~~~~~~----- 178 (296)
T 3k31_A 105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFT-YIASKAEPLMTNGGSILTLSYYGAEKVVPH----- 178 (296)
T ss_dssp HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHGGGCTTCEEEEEEECGGGTSCCTT-----
T ss_pred HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCEEEEEEehhhccCCCC-----
Confidence 45799999999998642 2234456788999999997 888887763 2359999999887765433
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|+.||.+++.+.+.++. ++..++|+.|..+..... ........... .. .....+
T Consensus 179 -----~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~---~~~~~~~~~~~-~~-------~p~~r~ 242 (296)
T 3k31_A 179 -----YNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI---SDFHYILTWNK-YN-------SPLRRN 242 (296)
T ss_dssp -----TTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC---HHHHHHHHHHH-HH-------STTSSC
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc---cchHHHHHHHH-hc-------CCCCCC
Confidence 67899999999998887643 457799999887642210 00011111111 11 123467
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
..++|+|+++++++...... ..++++++.+|..+.
T Consensus 243 ~~pedvA~~v~fL~s~~a~~--itG~~i~vdGG~~~~ 277 (296)
T 3k31_A 243 TTLDDVGGAALYLLSDLGRG--TTGETVHVDCGYHVV 277 (296)
T ss_dssp CCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGC
T ss_pred CCHHHHHHHHHHHcCCccCC--ccCCEEEECCCcccc
Confidence 88999999999999763221 123389999986544
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=179.26 Aligned_cols=217 Identities=13% Similarity=0.153 Sum_probs=152.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~~ 77 (300)
++|++|||||+|+||++++++|+++| ++|++++|++++. .+.++ +.++.+|++| +++..++ +.++++
T Consensus 1 ~~k~vlVTGas~giG~~~a~~l~~~G---~~V~~~~r~~~~~---~~~~~--~~~~~~D~~~-~~~~~~~~~~~~~~g~i 71 (239)
T 2ekp_A 1 MERKALVTGGSRGIGRAIAEALVARG---YRVAIASRNPEEA---AQSLG--AVPLPTDLEK-DDPKGLVKRALEALGGL 71 (239)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCHHH---HHHHT--CEEEECCTTT-SCHHHHHHHHHHHHTSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHhhC--cEEEecCCch-HHHHHHHHHHHHHcCCC
Confidence 36899999999999999999999999 8999999986542 22222 6678999999 7655544 456789
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||..... .+.+.++..+++|+.+++ .+++++ ++.+.++||++||...+.+.. +.+..
T Consensus 72 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------~~~~~ 142 (239)
T 2ekp_A 72 HVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAF-LLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG--------PVPIP 142 (239)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------TSCCH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEECchhhccCCC--------CCCCc
Confidence 9999999976432 133456788999999996 766665 445678999999988876541 12367
Q ss_pred hhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.||.+.+.+.+.++ .++.++||+.+.++.... ... ...+..... .. .....+.+++|+|
T Consensus 143 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~--~~~~~~~~~-~~-------~p~~~~~~~~dvA 211 (239)
T 2ekp_A 143 AYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLP-LRQ--NPELYEPIT-AR-------IPMGRWARPEEIA 211 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHH-HHT--CHHHHHHHH-TT-------CTTSSCBCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhc-ccc--CHHHHHHHH-hc-------CCCCCCcCHHHHH
Confidence 89999999999887654 356889999998763210 000 011111111 11 1234688999999
Q ss_pred HHHHHHHhccccccccccceeeecCCC
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++++++...... ..++++++.+|.
T Consensus 212 ~~~~~l~s~~~~~--~tG~~~~vdgG~ 236 (239)
T 2ekp_A 212 RVAAVLCGDEAEY--LTGQAVAVDGGF 236 (239)
T ss_dssp HHHHHHTSGGGTT--CCSCEEEESTTT
T ss_pred HHHHHHcCchhcC--CCCCEEEECCCc
Confidence 9999999753211 123388888874
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=178.91 Aligned_cols=200 Identities=15% Similarity=0.094 Sum_probs=142.4
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cC-
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FG- 75 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~- 75 (300)
|++++||||||+|+||+++++.|+++|.. ++|++++|+.+....+.+..+..+.++.+|++|.++++.+++. ++
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~-~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNI-RHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTC-CEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCC-cEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 67899999999999999999999999933 4789999986665544332245678899999999887766653 44
Q ss_pred -CCCEEEEcccccC-cc----ccccChhhhhhcccccchHHHHHhhhhc----------c-----CCeEEEeeccccccC
Q 022280 76 -QPDVVVNCAALSV-PR----VCENDPDSAMSINVPSSLVNWLSSFTEN----------K-----ENLLIHLSTDQVYEG 134 (300)
Q Consensus 76 -~~d~vih~a~~~~-~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~----------~-----~~~~v~~SS~~~~~~ 134 (300)
++|+||||||... .. ...+.++..+++|+.+++ ++++++... + .++||++||...+.+
T Consensus 80 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~ 158 (250)
T 1yo6_A 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVV-LLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT 158 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHH-HHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCST
T ss_pred CCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccC
Confidence 8999999999765 21 223345678999999996 777776542 4 679999999877654
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceee
Q 022280 135 VKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEF 207 (300)
Q Consensus 135 ~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (300)
... ++++..+...|+.||.+++.+++.++ .++.++||+.+..+... .
T Consensus 159 ~~~---~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~------------------~----- 212 (250)
T 1yo6_A 159 DNT---SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG------------------K----- 212 (250)
T ss_dssp TCC---STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------------------
T ss_pred Ccc---cccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCC------------------C-----
Confidence 321 12233457789999999999887654 35677888887654311 0
Q ss_pred ccCcccCceeHHHHHHHHHHHHhccc
Q 022280 208 FHDECRCPVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 208 ~~~~~~~~i~v~D~a~~~~~~~~~~~ 233 (300)
..+++++|+|+.+++++....
T Consensus 213 -----~~~~~~~~~a~~~~~~~~~~~ 233 (250)
T 1yo6_A 213 -----NAALTVEQSTAELISSFNKLD 233 (250)
T ss_dssp -----------HHHHHHHHHHHTTCC
T ss_pred -----CCCCCHHHHHHHHHHHHhccc
Confidence 135789999999999998743
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-24 Score=181.28 Aligned_cols=222 Identities=12% Similarity=0.063 Sum_probs=158.3
Q ss_pred CCCeEEEEcCCcc--chHHHHHhhhhccCCCceeeecCCCC--CchhhhhhcCCCceeEEEeecCCchhHHHHHHh----
Q 022280 2 SKKRVLVVGGTGY--LGQHLLQGLSEIEGKPYDVAATHHST--PLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 2 ~~~~ilItGatG~--iG~~l~~~L~~~g~~~~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
++|++|||||+|+ ||+++++.|+++| ++|++++|+. +....+.... ..+.++.+|++|.++++++++.
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHREG---AELAFTYVGQFKDRVEKLCAEF-NPAAVLPCDVISDQEIKDLFVELGKV 100 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHTT---CEEEEEECTTCHHHHHHHHGGG-CCSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHcC---CEEEEeeCchHHHHHHHHHHhc-CCceEEEeecCCHHHHHHHHHHHHHH
Confidence 4689999999966 9999999999999 8999999986 3333343333 3477899999999987766654
Q ss_pred cCCCCEEEEcccccCcc---------ccccChhhhhhcccccchHHHHHhhhhc---cCCeEEEeeccccccCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR---------VCENDPDSAMSINVPSSLVNWLSSFTEN---KENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~---------~~~~~~~~~~~~nv~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
++++|+||||||..... ...+.++..+++|+.+++ .+++++... +.++||++||...+.+...
T Consensus 101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 175 (280)
T 3nrc_A 101 WDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFA-ALAKEGRSMMKNRNASMVALTYIGAEKAMPS---- 175 (280)
T ss_dssp CSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTTTCEEEEEECGGGTSCCTT----
T ss_pred cCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCeEEEEeccccccCCCC----
Confidence 57899999999986531 233456678999999996 887776642 3469999999887765433
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+++.+.+.++ .++.+++|+.|..+...... ....+..... .. .....
T Consensus 176 ------~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~---~~~~~~~~~~-~~-------~p~~~ 238 (280)
T 3nrc_A 176 ------YNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGIS---NFKKMLDYNA-MV-------SPLKK 238 (280)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCT---THHHHHHHHH-HH-------STTCS
T ss_pred ------chhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCc---chHHHHHHHH-hc-------CCCCC
Confidence 6789999999999887654 35678999998876422110 0112222111 11 12345
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
+.+++|+|+++++++...... ..++++++.+|..+
T Consensus 239 ~~~pedvA~~v~~l~s~~~~~--~tG~~i~vdgG~~~ 273 (280)
T 3nrc_A 239 NVDIMEVGNTVAFLCSDMATG--ITGEVVHVDAGYHC 273 (280)
T ss_dssp CCCHHHHHHHHHHTTSGGGTT--CCSCEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHhCcccCC--cCCcEEEECCCccc
Confidence 788999999999999764311 12338999998654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-25 Score=185.12 Aligned_cols=223 Identities=14% Similarity=0.105 Sum_probs=156.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHhc---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALKF--- 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~--- 74 (300)
|.+|++|||||+|+||+++++.|+++| ++|++++|+.+....+.+.+ +..+.++.+|++|.+++..+++..
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAG---AHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 356899999999999999999999999 89999999877765554432 567788999999999877666532
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+++|++|||||...... +.+.++..+++|+.|++ ++++++ ++.+.++||++||...+.+...
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~--------- 177 (275)
T 4imr_A 108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTV-DMLQSALPKMVARKWGRVVSIGSINQLRPKSV--------- 177 (275)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT---------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCcEEEEECCHHhCCCCCC---------
Confidence 68999999999764322 33456678999999996 777765 4456679999999887764322
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+.+.+.+.++. ++..++||.+..+...... . ............. .....+..++
T Consensus 178 -~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~-~~~~~~~~~~~~~-------~p~~r~~~pe 247 (275)
T 4imr_A 178 -VTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRR-A-QDPEGWDEYVRTL-------NWMGRAGRPE 247 (275)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHH-H-HCHHHHHHHHHHH-------STTCSCBCGG
T ss_pred -chhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCccccccc-c-cChHHHHHHHhhc-------CccCCCcCHH
Confidence 56799999999998887654 4566888877643210000 0 0000111111000 0234578899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
|+|+++++++...... ..++++++.+|
T Consensus 248 dvA~~v~fL~s~~a~~--itG~~i~vdGG 274 (275)
T 4imr_A 248 EMVGAALFLASEACSF--MTGETIFLTGG 274 (275)
T ss_dssp GGHHHHHHHHSGGGTT--CCSCEEEESSC
T ss_pred HHHHHHHHHcCcccCC--CCCCEEEeCCC
Confidence 9999999999764321 11338888876
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-24 Score=179.06 Aligned_cols=214 Identities=13% Similarity=0.134 Sum_probs=151.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCce-eeecCCCCCc--hhhhhhcC-CCceeEEEeecCCc-hhHHHHHH---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATHHSTPL--PQLLLDAL-PHSFVFFDVDLKSG-SGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~-v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~-~~~~~~~~--- 72 (300)
|++|+++||||+|+||++++++|+++| ++ |++++|+.+. ...+.+.. +..+.++.+|++|+ ++++++++
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G---~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRN---LKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTC---CSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC---CcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHH
Confidence 457899999999999999999999999 76 8888888632 23333322 24677889999998 77655554
Q ss_pred -hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhh----cc---CCeEEEeeccccccCCCCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE----NK---ENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~---~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.++++|+||||||... .+.++..+++|+.+++ ++++++.. .+ .++||++||...+.+...
T Consensus 80 ~~~g~id~lv~~Ag~~~----~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 147 (254)
T 1sby_A 80 DQLKTVDILINGAGILD----DHQIERTIAINFTGLV-NTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQ------- 147 (254)
T ss_dssp HHHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHH-HHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTT-------
T ss_pred HhcCCCCEEEECCccCC----HHHHhhhheeeehhHH-HHHHHHHHHHHHhcCCCCCEEEEECchhhccCCCC-------
Confidence 4578999999999753 3468899999999996 87777654 22 358999999988765433
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCch-HHHHHHHHhcCCceeeccCcccCce
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLP-IQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+.+.+.+.++ .++.+++|+.+.++..... ..... ........ . ...+.
T Consensus 148 ---~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~-~----------~~~~~ 212 (254)
T 1sby_A 148 ---VPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTF-NSWLDVEPRVAELL-L----------SHPTQ 212 (254)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSC-CCGGGSCTTHHHHH-T----------TSCCE
T ss_pred ---chHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCcccccc-chhhhhhHHHHHHH-h----------cCCCC
Confidence 6789999999999887653 3568899999987632110 00000 00011111 1 11235
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++|+|++++++++... .|+ +|++++|.
T Consensus 213 ~~~dvA~~i~~~~~~~~-~G~----~~~v~gG~ 240 (254)
T 1sby_A 213 TSEQCGQNFVKAIEANK-NGA----IWKLDLGT 240 (254)
T ss_dssp EHHHHHHHHHHHHHHCC-TTC----EEEEETTE
T ss_pred CHHHHHHHHHHHHHcCC-CCC----EEEEeCCc
Confidence 89999999999997432 333 89998873
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-24 Score=178.32 Aligned_cols=224 Identities=12% Similarity=0.049 Sum_probs=158.4
Q ss_pred CCCeEEEEcCCcc--chHHHHHhhhhccCCCceeeecCCCCCchh---hhhhcCCC-ceeEEEeecCCchhHHHHHH---
Q 022280 2 SKKRVLVVGGTGY--LGQHLLQGLSEIEGKPYDVAATHHSTPLPQ---LLLDALPH-SFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 2 ~~~~ilItGatG~--iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~---~~~~~~~~-~~~~~~~D~~~~~~~~~~~~--- 72 (300)
+++++|||||+|+ ||++++++|+++| ++|++++|+.+... .+....+. .+.++.+|++|+++++++++
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAG---ARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCC---CEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999987 9999999999999 89999998853322 23333333 67889999999998776665
Q ss_pred -hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
.++++|+|||+||.... ....+.++..+++|+.+++ .+++++... +.++||++||...+.+.+.
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 157 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLT-AVVKAARPMMTEGGSIVTLTYLGGELVMPN---- 157 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHGGGCTTCEEEEEEECGGGTSCCTT----
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHH-HHHHHHHhhcCCCceEEEEecccccccCCC----
Confidence 45789999999997642 1123345678899999996 888887763 2359999999887765433
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+++.+.+.++. ++..++|+.+..+..... . ....+..... .. .....
T Consensus 158 ------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~--~~~~~~~~~~-~~-------~~~~~ 220 (266)
T 3oig_A 158 ------YNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGI-S--DFNSILKDIE-ER-------APLRR 220 (266)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC-T--THHHHHHHHH-HH-------STTSS
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc-c--chHHHHHHHH-hc-------CCCCC
Confidence 67899999999998876643 457789998876532211 0 0112222211 11 12345
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+.+++|+|+++++++...... ..++++++.+|....
T Consensus 221 ~~~p~dva~~v~~l~s~~~~~--~tG~~i~vdGG~~~~ 256 (266)
T 3oig_A 221 TTTPEEVGDTAAFLFSDMSRG--ITGENLHVDSGFHIT 256 (266)
T ss_dssp CCCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGC
T ss_pred CCCHHHHHHHHHHHcCCchhc--CcCCEEEECCCeEEe
Confidence 789999999999999864321 123489999886543
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=178.08 Aligned_cols=192 Identities=14% Similarity=0.116 Sum_probs=138.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~~d 78 (300)
+++||||||+|+||++++++|+++| ++|++++|+++....+.+.+. .+.++.+|++|.++++++++ .++++|
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKG---YRVGLMARDEKRLQALAAELE-GALPLPGDVREEGDWARAVAAMEEAFGELS 80 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHST-TCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhh-hceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 4689999999999999999999999 899999998665555554443 56778999999988766654 357899
Q ss_pred EEEEcccccCccc----cccChhhhhhcccccchH---HHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 79 VVVNCAALSVPRV----CENDPDSAMSINVPSSLV---NWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 79 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~---~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
+|||+||...... ..+.++..+++|+.+++. .+++.+++.+.++||++||...+.+... ...|
T Consensus 81 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----------~~~Y 150 (234)
T 2ehd_A 81 ALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKG----------GAAY 150 (234)
T ss_dssp EEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCCTT----------CHHH
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCCCC----------Cchh
Confidence 9999999764321 233456789999999851 3444455567789999999887765432 6789
Q ss_pred HHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 152 GKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
+.+|.+.+.+.+.+. .++.++||+.+..+.... . . .. ..+++++|+|++
T Consensus 151 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----------~-----~-~~--------~~~~~~~dvA~~ 206 (234)
T 2ehd_A 151 NASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN----------T-----P-GQ--------AWKLKPEDVAQA 206 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEECC----------------------------------------CCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc----------c-----c-cc--------cCCCCHHHHHHH
Confidence 999999998877653 356789998876542110 0 0 00 015789999999
Q ss_pred HHHHHhcc
Q 022280 225 ILALTNRW 232 (300)
Q Consensus 225 ~~~~~~~~ 232 (300)
+++++..+
T Consensus 207 ~~~l~~~~ 214 (234)
T 2ehd_A 207 VLFALEMP 214 (234)
T ss_dssp HHHHHHSC
T ss_pred HHHHhCCC
Confidence 99999874
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-24 Score=180.40 Aligned_cols=228 Identities=14% Similarity=0.085 Sum_probs=157.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhh---hhcCCCceeEEEeecCCchhHHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLL---LDALPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
|++|++|||||+|+||+++++.|+++| ++|++++|+.+. ...+ ....+..+.++.+|++|.+++..+++
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRG---CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999 899999988543 2222 12234567788999999988766554
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
.++++|+||||||..... .+.+.++..+++|+.|++ ++++++... +.++||++||...+.+.. .
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~g~iv~isS~~~~~~~~---------~ 173 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQF-FVAREAYKHLEIGGRLILMGSITGQAKAV---------P 173 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHSCTTCEEEEECCGGGTCSSC---------S
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHhcCCeEEEEechhhccCCC---------C
Confidence 467899999999976432 133456788999999997 888888774 567999999987654321 1
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCC------CCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTIS------PVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
+...|+.||.+.+.+.+.++ .++.+++|+.+.++.... +.............. .. ......
T Consensus 174 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~p~~ 247 (283)
T 1g0o_A 174 KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYA-AV-----QWSPLR 247 (283)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHH-HH-----HSCTTC
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHH-hh-----cCCCCC
Confidence 25689999999999887654 367889999998752100 000000011111111 10 011234
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+.+++|+|+++++++...... ..+.++++.+|.
T Consensus 248 r~~~p~dvA~~v~~l~s~~~~~--itG~~i~vdgG~ 281 (283)
T 1g0o_A 248 RVGLPIDIARVVCFLASNDGGW--VTGKVIGIDGGA 281 (283)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCccccC--cCCCEEEeCCCc
Confidence 6889999999999999764311 113389998874
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-24 Score=180.08 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=154.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-Cchhhhh---hcCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLL---DALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.+|++|||||+|+||++++++|+++| ++|++++++. +....+. ...+..+.++.+|++|+++++++++ .
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEG---AAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 8999886654 3233322 2235677889999999998666554 5
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccc-cCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVY-EGVKSFYKEEDEIA 146 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~-~~~~~~~~E~~~~~ 146 (300)
++++|+||||||...... +.+.++..+++|+.|++ .+++++... +.++||++||.... ++.+
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~m~~~g~iv~isS~~~~~~~~~---------- 175 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPF-VAIRSASRHLGDGGRIITIGSNLAELVPWP---------- 175 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHCCTTCEEEEECCGGGTCCCST----------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhcCCEEEEEeChhhccCCCC----------
Confidence 679999999999864322 33456788999999996 888887763 44699999986543 2222
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
+...|+.||.+++.+.+.++ .++..++|+.|..+..... + .. ..... .. .....+..++
T Consensus 176 ~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~-~~----~~~~~-~~-------~~~~r~~~pe 241 (271)
T 3v2g_A 176 GISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPAD-G-DH----AEAQR-ER-------IATGSYGEPQ 241 (271)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSS-C-SS----HHHHH-HT-------CTTSSCBCHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCccccc-c-hh----HHHHH-hc-------CCCCCCCCHH
Confidence 26789999999999887654 3567899999987753221 1 11 11111 11 1234578899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|+|+++++++...... ..++++++.+|.
T Consensus 242 dvA~~v~fL~s~~~~~--itG~~i~vdGG~ 269 (271)
T 3v2g_A 242 DIAGLVAWLAGPQGKF--VTGASLTIDGGA 269 (271)
T ss_dssp HHHHHHHHHHSGGGTT--CCSCEEEESTTT
T ss_pred HHHHHHHHHhCcccCC--ccCCEEEeCcCc
Confidence 9999999999653221 113389998874
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-24 Score=182.17 Aligned_cols=223 Identities=17% Similarity=0.099 Sum_probs=156.2
Q ss_pred CCCeEEEEcCCcc--chHHHHHhhhhccCCCceeeecCCCCCch---hhhhhcCCCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGY--LGQHLLQGLSEIEGKPYDVAATHHSTPLP---QLLLDALPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~--iG~~l~~~L~~~g~~~~~v~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
++|++|||||+|+ ||+++++.|+++| ++|++.+|+.+.. ..+.... ..+.++.+|++|.++++.+++
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAG---AELAFTYQGDALKKRVEPLAEEL-GAFVAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTT---CEEEEEECSHHHHHHHHHHHHHH-TCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHhc-CCceEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999987 9999999999999 8999999884322 2222222 356778999999998776665
Q ss_pred hcCCCCEEEEcccccCc--------cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVP--------RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
.++++|++|||||.... ..+.+.++..+++|+.+++ .+++++... ..++||++||...+.+...
T Consensus 106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~----- 179 (293)
T 3grk_A 106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLT-AVSRRAEKLMADGGSILTLTYYGAEKVMPN----- 179 (293)
T ss_dssp HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHTTTCEEEEEEECGGGTSBCTT-----
T ss_pred hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHH-HHHHHHHHhccCCCEEEEEeehhhccCCCc-----
Confidence 45799999999998641 2233456788999999996 888877652 3459999999888765443
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|+.||.+.+.+.+.++. ++..++|+.|..+..... . .......... .. .....+
T Consensus 180 -----~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~--~~~~~~~~~~-~~-------~p~~r~ 243 (293)
T 3grk_A 180 -----YNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGI-G--DFRYILKWNE-YN-------APLRRT 243 (293)
T ss_dssp -----TTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-------C--CHHHHHHHHH-HH-------STTSSC
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcc-c--chHHHHHHHH-hc-------CCCCCC
Confidence 67999999999998887653 457799998877542110 0 0111111111 11 123467
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
..++|+|+++++++...... ..++++++.+|..++
T Consensus 244 ~~pedvA~~v~~L~s~~~~~--itG~~i~vdGG~~~~ 278 (293)
T 3grk_A 244 VTIDEVGDVGLYFLSDLSRS--VTGEVHHADSGYHVI 278 (293)
T ss_dssp CCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGB
T ss_pred CCHHHHHHHHHHHcCccccC--CcceEEEECCCcccC
Confidence 88999999999999763321 123389999986543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-24 Score=175.54 Aligned_cols=211 Identities=16% Similarity=0.152 Sum_probs=152.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh----cCCCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD----ALPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
+||++|||||+|+||++++++|+++| ++|++.+|+.+......+ ..+..+.++.+|++|++++.++++ .
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDG---YALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLER 77 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999999 899999998665544433 225677889999999998766554 4
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++++|+||||||...... +.+.++..+++|+.|++ ++++++.. .+.+++|++||...+.+.+.
T Consensus 78 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~--------- 147 (235)
T 3l77_A 78 FGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVW-RTLKAFLDSLKRTGGLALVTTSDVSARLIPY--------- 147 (235)
T ss_dssp HSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEECCGGGSSCCTT---------
T ss_pred cCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCcEEEEecchhcccCCC---------
Confidence 578999999999865432 34456788999999996 77777654 24457888887665544332
Q ss_pred CCChhHHHHHHHHHHHHHH-----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 147 PVNVYGKSKVAAEKFIYEK-----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~-----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
...|+.||.+.+.+.+.+ +.++..++|+.+..+...... . ......++.++|+
T Consensus 148 -~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~---------------~------~~~~~~~~~p~dv 205 (235)
T 3l77_A 148 -GGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKP---------------G------KPKEKGYLKPDEI 205 (235)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCS---------------C------CCGGGTCBCHHHH
T ss_pred -cchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccC---------------C------cccccCCCCHHHH
Confidence 568999999999998875 235678999888654321100 0 0112257889999
Q ss_pred HHHHHHHHhccccccccccceeeecCCC
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|++++++++.+.... .+.++...+++
T Consensus 206 a~~v~~l~~~~~~~~--~~~~~~~~~~~ 231 (235)
T 3l77_A 206 AEAVRCLLKLPKDVR--VEELMLRSVYQ 231 (235)
T ss_dssp HHHHHHHHTSCTTCC--CCEEEECCTTS
T ss_pred HHHHHHHHcCCCCCc--cceEEEeeccc
Confidence 999999999854321 12355555544
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=178.42 Aligned_cols=201 Identities=16% Similarity=0.180 Sum_probs=145.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~~d~ 79 (300)
|++|||||+|+||+++++.|+++| ++|++++|+.+....+.+.++..+.++.+|++|+++++.+++. ++++|+
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~ 77 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDI 77 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCE
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 589999999999999999999999 8999999987666555555555678899999999998888764 468999
Q ss_pred EEEcccccC-c----cccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 80 VVNCAALSV-P----RVCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 80 vih~a~~~~-~----~~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
||||||... . ..+.+.++..+++|+.|++ .+++++. +.+.++||++||...+.+.+. ...
T Consensus 78 lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------~~~ 146 (248)
T 3asu_A 78 LVNNAGLALGMEPAHKASVEDWETMIDTNNKGLV-YMTRAVLPGMVERNHGHIINIGSTAGSWPYAG----------GNV 146 (248)
T ss_dssp EEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEECCGGGTSCCTT----------CHH
T ss_pred EEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCceEEEEccchhccCCCC----------Cch
Confidence 999999752 1 1233456788999999996 7666654 456679999999887655433 678
Q ss_pred hHHHHHHHHHHHHHHc-------CCceeEeeeeeeC-CCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 151 YGKSKVAAEKFIYEKC-------SNFAILRSSIIYG-PQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
|+.||.+.+.+.+.++ .++.+++|+.+.| +........ ....... .. ....+++++|+|
T Consensus 147 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~--~~~~~~~---------~~--~~~~~~~p~dvA 213 (248)
T 3asu_A 147 YGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKG--DDGKAEK---------TY--QNTVALTPEDVS 213 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-----------------------------------CCBCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccC--chHHHHH---------HH--hccCCCCHHHHH
Confidence 9999999999987654 3567899999984 321100000 0000000 00 112357899999
Q ss_pred HHHHHHHhc
Q 022280 223 KIILALTNR 231 (300)
Q Consensus 223 ~~~~~~~~~ 231 (300)
+++++++..
T Consensus 214 ~~v~~l~s~ 222 (248)
T 3asu_A 214 EAVWWVSTL 222 (248)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 999999986
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=178.23 Aligned_cols=206 Identities=18% Similarity=0.115 Sum_probs=147.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----c--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----F-- 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~-- 74 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+++... ....++.+|++|+++++.+++. +
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 70 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNG---YTVLNIDLSANDQA-------DSNILVDGNKNWTEQEQSILEQTASSLQG 70 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCCTTS-------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEecCccccc-------cccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 678899999999999999999999999 99999999865432 2345578999999887666553 4
Q ss_pred CCCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+++|+||||||..... ...+.++..+++|+.+++ .+++++... ..++||++||...+.+.+.
T Consensus 71 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 139 (236)
T 1ooe_A 71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSA-IAAKLATTHLKPGGLLQLTGAAAAMGPTPS---------- 139 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHEEEEEEEEEECCGGGGSCCTT----------
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHhccCCEEEEECchhhccCCCC----------
Confidence 6899999999976422 223345778999999996 888777652 2359999999887755332
Q ss_pred CChhHHHHHHHHHHHHHHcCC---------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 148 VNVYGKSKVAAEKFIYEKCSN---------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~~---------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+.+.+.+.++.+ +.+++|+.+.++. ..... .. .....++++
T Consensus 140 ~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~-------------~~~~~-~~-------~~~~~~~~~ 198 (236)
T 1ooe_A 140 MIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM-------------NRKWM-PN-------ADHSSWTPL 198 (236)
T ss_dssp BHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH-------------HHHHS-TT-------CCGGGCBCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc-------------hhhcC-CC-------ccccccCCH
Confidence 678999999999999876543 4568888776531 11111 11 112346789
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+|++++.++..+... ...++.+++.++.
T Consensus 199 ~dvA~~i~~~l~s~~~~-~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 199 SFISEHLLKWTTETSSR-PSSGALLKITTEN 228 (236)
T ss_dssp HHHHHHHHHHHHCGGGC-CCTTCEEEEEEET
T ss_pred HHHHHHHHHHHcCCCcc-cccccEEEEecCC
Confidence 99999998777443222 1113377776654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=180.95 Aligned_cols=196 Identities=15% Similarity=0.161 Sum_probs=143.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.++++|||||+|+||++++++|+++| ++|++++|+.+....+.+. .+..+.++.+|++|.+++..+++ .+
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSLG---ARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999 8999999987655544333 25677889999999998776654 45
Q ss_pred CCCCEEEEcccccCc-----cccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVP-----RVCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|+||||||.... ..+.+.++..+++|+.|++ .+++++. +.+.++||++||...+.+...
T Consensus 105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 175 (262)
T 3rkr_A 105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPY-LLLRAFAPAMIAAKRGHIINISSLAGKNPVAD-------- 175 (262)
T ss_dssp SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCCEEEEECSSCSSCCCTT--------
T ss_pred CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCceEEEEechhhcCCCCC--------
Confidence 789999999997321 1233456778999999996 7776654 356679999999887765433
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+++.+++.++ .++.+++||.+..+.... +. .. .....++++
T Consensus 176 --~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~---------~~-----~~-------~~~~~~~~p 232 (262)
T 3rkr_A 176 --GAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVG---------LS-----AK-------KSALGAIEP 232 (262)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------------------------CCCH
T ss_pred --CchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccc---------cc-----cc-------cccccCCCH
Confidence 6789999999999887654 356778888876542110 00 00 112346789
Q ss_pred HHHHHHHHHHHhcc
Q 022280 219 RDVVKIILALTNRW 232 (300)
Q Consensus 219 ~D~a~~~~~~~~~~ 232 (300)
+|+|+++++++...
T Consensus 233 ~dvA~~v~~l~s~~ 246 (262)
T 3rkr_A 233 DDIADVVALLATQA 246 (262)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCc
Confidence 99999999999874
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-24 Score=184.07 Aligned_cols=227 Identities=12% Similarity=0.077 Sum_probs=155.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC------------chhhh---hhcCCCceeEEEeecCCchh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP------------LPQLL---LDALPHSFVFFDVDLKSGSG 66 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~------------~~~~~---~~~~~~~~~~~~~D~~~~~~ 66 (300)
.+|++|||||+|+||+++++.|+++| ++|++++|+.. ..... ....+..+.++.+|++|+++
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G---~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDG---ADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLAS 121 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 46899999999999999999999999 89999877521 11111 12235567889999999998
Q ss_pred HHHHHH----hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----cc-CCeEEEeecccccc
Q 022280 67 FDAVAL----KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NK-ENLLIHLSTDQVYE 133 (300)
Q Consensus 67 ~~~~~~----~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~ 133 (300)
++.+++ .++++|+||||||+..... +.+.++..+++|+.|++ .+++++.. .+ .++||++||...+.
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~~g~Iv~isS~~~~~ 200 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAW-HACRAVLPSMIERGQGGSVIFVSSTVGLR 200 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence 766654 4679999999999865422 33456788999999996 77766643 33 45899999988776
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCC--------CCCCchHHHHHHH
Q 022280 134 GVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISP--------VPKSLPIQWIDSV 198 (300)
Q Consensus 134 ~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~--------~~~~~~~~~~~~~ 198 (300)
+... ...|+.||.+++.+.+.++. ++..++|+.|.++..... ........-....
T Consensus 201 ~~~~----------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (317)
T 3oec_A 201 GAPG----------QSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAEL 270 (317)
T ss_dssp CCTT----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHHHH
T ss_pred CCCC----------CcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhhccccchhHHHHH
Confidence 5443 67899999999998887653 457799999887531100 0000000000111
Q ss_pred HhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 199 LSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 199 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
.... ....+.|++++|+|+++++++...... ..++++++++|..
T Consensus 271 ~~~~------~~~p~~~~~pedvA~av~fL~s~~a~~--itG~~i~vdGG~~ 314 (317)
T 3oec_A 271 FSQL------TLLPIPWVEPEDVSNAVAWLASDEARY--IHGAAIPVDGGQL 314 (317)
T ss_dssp HTTT------CSSSSSSBCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTGG
T ss_pred Hhhh------ccCCCCCCCHHHHHHHHHHHcCCcccC--CCCCEEEECcchh
Confidence 1000 011257899999999999999653221 1233899998864
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=184.52 Aligned_cols=228 Identities=15% Similarity=0.069 Sum_probs=158.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
|.+|++|||||+|+||++++++|+++| ++|++++|+.+....+....+..+.++.+|++|.+++..++ +.+++
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEG---ARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGK 79 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 357899999999999999999999999 89999999877766666666677888999999998866555 44689
Q ss_pred CCEEEEcccccCccc---------cccChhhhhhcccccchHHHHHhhhhc---cCCeEEEeeccccccCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV---------CENDPDSAMSINVPSSLVNWLSSFTEN---KENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 77 ~d~vih~a~~~~~~~---------~~~~~~~~~~~nv~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
+|++|||||+..... ..+.++..+++|+.+++ .+++++... +.+++|++||...+.+...
T Consensus 80 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 151 (281)
T 3zv4_A 80 IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYI-HAVKACLPALVSSRGSVVFTISNAGFYPNGG------- 151 (281)
T ss_dssp CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEECCGGGTSSSSS-------
T ss_pred CCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCeEEEEecchhccCCCC-------
Confidence 999999999754211 11235678899999996 777766541 2369999999887765433
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHH-----HHHHHhcCCceeeccCccc
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQW-----IDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+++.+.+.++. ++..+.|+.+..+-....... ..... ....+.. ....+
T Consensus 152 ---~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~p~~ 220 (281)
T 3zv4_A 152 ---GPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLG-LSEQSISSVPLADMLKS-------VLPIG 220 (281)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC---------CCHHHHHHH-------TCTTS
T ss_pred ---CchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccc-cccccccchhHHHHHHh-------cCCCC
Confidence 66899999999998887653 346688888765532110000 00000 0011101 11345
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
.+..++|+|+++++++..+... -..++++++.+|..+
T Consensus 221 r~~~pedvA~~v~fL~s~~~~~-~itG~~i~vdGG~~~ 257 (281)
T 3zv4_A 221 RMPALEEYTGAYVFFATRGDSL-PATGALLNYDGGMGV 257 (281)
T ss_dssp SCCCGGGGSHHHHHHHSTTTST-TCSSCEEEESSSGGG
T ss_pred CCCCHHHHHHHHHHhhcccccc-cccCcEEEECCCCcc
Confidence 6889999999999999833211 011338999888543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-24 Score=178.97 Aligned_cols=223 Identities=16% Similarity=0.073 Sum_probs=159.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~~ 77 (300)
++|++|||||+++||+++++.|+++| ++|++.+|+.+..++..++++.....+++|++|++++++++ ++++++
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~G---a~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEG---ARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46889999999999999999999999 89999999988777777777777888999999999866654 457899
Q ss_pred CEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 78 DVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 78 d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
|++|||||..... .+.+.++..+++|+.|++ .+.+++.. ...+++|++||.....+.+. ...|
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~-~~~~~~~p~m~~~G~IInisS~~~~~~~~~----------~~~Y 173 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVL-FTVQKALPLLARGSSVVLTGSTAGSTGTPA----------FSVY 173 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHH-HHHHHHTTTEEEEEEEEEECCGGGGSCCTT----------CHHH
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHH-HHHHHHHHHHhhCCeEEEEeehhhccCCCC----------chHH
Confidence 9999999986542 234567889999999996 77777665 22358999999877655444 6789
Q ss_pred HHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCch---HHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 152 GKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLP---IQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
+.||.++..+.+.++. ++..+-||.+.-+...... ...+ ..+..... .. -++..+..++|+
T Consensus 174 ~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~-~~~~~~~~~~~~~~~-~~-------~PlgR~g~peei 244 (273)
T 4fgs_A 174 AASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELA-GKDPVQQQGLLNALA-AQ-------VPMGRVGRAEEV 244 (273)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC----------CHHHHHHHHHHHH-HH-------STTSSCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhh-ccCchhhHHHHHHHH-hc-------CCCCCCcCHHHH
Confidence 9999999999887754 3455777766543211100 0001 01111111 11 134567889999
Q ss_pred HHHHHHHHhccccccccccceeeecCCC
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|.++++|+...... -.++++.+.+|.
T Consensus 245 A~~v~FLaSd~a~~--iTG~~i~VDGG~ 270 (273)
T 4fgs_A 245 AAAALFLASDDSSF--VTGAELFVDGGS 270 (273)
T ss_dssp HHHHHHHHSGGGTT--CCSCEEEESTTT
T ss_pred HHHHHHHhCchhcC--ccCCeEeECcCh
Confidence 99999999653221 113388888874
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=188.35 Aligned_cols=213 Identities=15% Similarity=0.163 Sum_probs=142.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CC--ceeEEEeecCCchhHHHHHH----h
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PH--SFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~--~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
+++||||||+|+||++++++|+++| ++|++++|+.+....+.+.+ +. .+.++.+|++|.+++..+++ .
T Consensus 8 ~k~vlVTGas~gIG~~la~~l~~~G---~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 8 GRTAFVTGGANGVGIGLVRQLLNQG---CKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp TCEEEEETTTSTHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCchHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999999999999 99999999976655444332 22 67789999999998776665 3
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc----------cCCeEEEeeccccccCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN----------KENLLIHLSTDQVYEGVKSFY 139 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~----------~~~~~v~~SS~~~~~~~~~~~ 139 (300)
++++|+||||||+..... +.+.++..+++|+.|++ ++++++... +.++||++||...+.+...
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~~-- 161 (319)
T 3ioy_A 85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVV-NGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGS-- 161 (319)
T ss_dssp TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCSS--
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCCC--
Confidence 578999999999764322 23446678999999996 777766542 2458999999888766544
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhc--CCceeeccC
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSK--GEKVEFFHD 210 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 210 (300)
...|+.||.+++.+.+.++ .++.+++|+.|.++....... ....+...... .........
T Consensus 162 --------~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 230 (319)
T 3ioy_A 162 --------PGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDI---RPDALKGEVKPVDKTAVERLAG 230 (319)
T ss_dssp --------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC--------------------------------CC
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCccccccc---CchhhcccccchhHHHHHHHHH
Confidence 5789999997776665442 356889999987764221100 00001000000 000000111
Q ss_pred cccCceeHHHHHHHHHHHHhcc
Q 022280 211 ECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 211 ~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
.....++++|+|+.++.+++++
T Consensus 231 ~~~~~~~pe~vA~~~~~al~~~ 252 (319)
T 3ioy_A 231 VHEFGMEPDVIGARVIEAMKAN 252 (319)
T ss_dssp GGGSSBCHHHHHHHHHHHHHTT
T ss_pred hhhcCCCHHHHHHHHHHHHHcC
Confidence 1122389999999999999883
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-24 Score=177.97 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=149.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~~ 77 (300)
|+|+||||||+|+||++++++|+++| ++|++++|+.+.... ..+.+|++|.++++.+++. ++++
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G---~~V~~~~r~~~~~~~---------~~~~~d~~d~~~v~~~~~~~~~~~g~i 88 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKS---WNTISIDFRENPNAD---------HSFTIKDSGEEEIKSVIEKINSKSIKV 88 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCTTSS---------EEEECSCSSHHHHHHHHHHHHTTTCCE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCcccccc---------cceEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 899999998654321 2378899999987776654 4789
Q ss_pred CEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 78 DVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 78 d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
|+||||||..... ...+.++..+++|+.+++ ++++++... ..++||++||...+.+... ...
T Consensus 89 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~~ 157 (251)
T 3orf_A 89 DTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAF-ASAHIGAKLLNQGGLFVLTGASAALNRTSG----------MIA 157 (251)
T ss_dssp EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHEEEEEEEEEECCGGGGSCCTT----------BHH
T ss_pred CEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHH-HHHHHHHHhhccCCEEEEEechhhccCCCC----------Cch
Confidence 9999999975432 223456788999999996 888887763 2248999999887755433 678
Q ss_pred hHHHHHHHHHHHHHHcCC---------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 151 YGKSKVAAEKFIYEKCSN---------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~~---------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
|+.||.+++.+++.++.+ +.+++|+.+..+ +..... . ......+++++|+
T Consensus 158 Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~-------------~~~~~~-~-------~~~~~~~~~~~dv 216 (251)
T 3orf_A 158 YGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTP-------------TNRKYM-S-------DANFDDWTPLSEV 216 (251)
T ss_dssp HHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCH-------------HHHHHC-T-------TSCGGGSBCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCc-------------chhhhc-c-------cccccccCCHHHH
Confidence 999999999999887665 345666666432 122111 1 1234568899999
Q ss_pred HHHHHHHHhccccccccccceeeecCCCcc
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
|+++++++..+... ...++++++.+++..
T Consensus 217 a~~i~~l~~~~~~~-~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 217 AEKLFEWSTNSDSR-PTNGSLVKFETKSKV 245 (251)
T ss_dssp HHHHHHHHHCGGGC-CCTTCEEEEEEETTE
T ss_pred HHHHHHHhcCcccc-CCcceEEEEecCCcc
Confidence 99999999882111 112338888776643
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=178.61 Aligned_cols=220 Identities=16% Similarity=0.170 Sum_probs=155.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-Cchhhhhh----cCCCceeEEEeecCC----chhHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLD----ALPHSFVFFDVDLKS----GSGFDAVA 71 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~----~~~~~~~~~~~D~~~----~~~~~~~~ 71 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+. +....+.+ ..+..+.++.+|++| +++++.++
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G---~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~ 97 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTG---YRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEII 97 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHT---CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHH
Confidence 457899999999999999999999999 8999999987 54443332 234567789999999 77766655
Q ss_pred H----hcCCCCEEEEcccccCcc--------------ccccChhhhhhcccccchHHHHHhhhh----cc------CCeE
Q 022280 72 L----KFGQPDVVVNCAALSVPR--------------VCENDPDSAMSINVPSSLVNWLSSFTE----NK------ENLL 123 (300)
Q Consensus 72 ~----~~~~~d~vih~a~~~~~~--------------~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~------~~~~ 123 (300)
+ .++++|+||||||..... ...+.++..+++|+.+++ .+++++.. .+ .++|
T Consensus 98 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~~~~~g~i 176 (288)
T 2x9g_A 98 NSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPF-LLTMSFAQRQKGTNPNCTSSNLSI 176 (288)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHH-HHHHHHHHHC--------CCCEEE
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHhhcCCCCCCCCeEE
Confidence 4 467899999999976432 122335678899999996 77666553 23 4599
Q ss_pred EEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHH
Q 022280 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWID 196 (300)
Q Consensus 124 v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~ 196 (300)
|++||...+.+... ...|+.||.+++.+.+.++. ++.+++|+.+.++. . . .. ....
T Consensus 177 v~isS~~~~~~~~~----------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~----~~-~~~~ 239 (288)
T 2x9g_A 177 VNLCDAMVDQPCMA----------FSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-M----GE-EEKD 239 (288)
T ss_dssp EEECCTTTTSCCTT----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-S----CH-HHHH
T ss_pred EEEecccccCCCCC----------CchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-c----Ch-HHHH
Confidence 99999888765433 67899999999988876543 56789999998875 2 1 11 1222
Q ss_pred HHHhcCCceeeccCcccCc-eeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 197 SVLSKGEKVEFFHDECRCP-VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~-i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
... ... ....+ .+++|+|+++++++...... ..+.++++.+|..+
T Consensus 240 ~~~-~~~-------p~~r~~~~pedvA~~v~~l~s~~~~~--itG~~i~vdGG~~~ 285 (288)
T 2x9g_A 240 KWR-RKV-------PLGRREASAEQIADAVIFLVSGSAQY--ITGSIIKVDGGLSL 285 (288)
T ss_dssp HHH-HTC-------TTTSSCCCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGG
T ss_pred HHH-hhC-------CCCCCCCCHHHHHHHHHHHhCccccC--ccCCEEEECcchhh
Confidence 211 111 12345 78999999999999753211 12338888887543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=182.68 Aligned_cols=205 Identities=14% Similarity=0.114 Sum_probs=145.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.+|++|||||+|+||++++++|+++| ++|++++|+.+......+.+ +..+.++++|++|+++++++++ .
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 108 (281)
T 4dry_A 32 EGRIALVTGGGTGVGRGIAQALSAEG---YSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAE 108 (281)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999 89999999876555444332 2334778999999998766554 4
Q ss_pred cCCCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhh----hcc--CCeEEEeeccccccCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFT----ENK--ENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~--~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
++++|+||||||..... .+.+.++..+++|+.|++ .+.+++. +.+ .++||++||...+.+...
T Consensus 109 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~----- 182 (281)
T 4dry_A 109 FARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAF-LCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPN----- 182 (281)
T ss_dssp HSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCTT-----
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCCC-----
Confidence 58999999999975431 233456778999999986 6655544 333 469999999887655433
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC-cccC
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD-ECRC 214 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 214 (300)
...|+.||.+++.+.+.++. ++..++|+.|..+-.. ... . ........ ....
T Consensus 183 -----~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~-------------~~~-~-~~~~~~~~~~~~~ 242 (281)
T 4dry_A 183 -----SAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTA-------------RMS-T-GVLQANGEVAAEP 242 (281)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC---------------------C-EEECTTSCEEECC
T ss_pred -----ChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhh-------------hhc-c-hhhhhhhcccccC
Confidence 67899999999998887653 4567888887654211 000 0 00000111 2345
Q ss_pred ceeHHHHHHHHHHHHhccccc
Q 022280 215 PVYVRDVVKIILALTNRWLSE 235 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~ 235 (300)
++.++|+|+++++++..+...
T Consensus 243 ~~~pedvA~~v~fL~s~~~~~ 263 (281)
T 4dry_A 243 TIPIEHIAEAVVYMASLPLSA 263 (281)
T ss_dssp CBCHHHHHHHHHHHHHSCTTE
T ss_pred CCCHHHHHHHHHHHhCCCccC
Confidence 789999999999999986543
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-24 Score=178.71 Aligned_cols=202 Identities=15% Similarity=0.188 Sum_probs=143.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC--CceeEEEeecCCchhHHHHHHh----cCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLKSGSGFDAVALK----FGQP 77 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~----~~~~ 77 (300)
|++|||||+|+||++++++|+++| ++|++++|+++....+.+.+. ..+.++.+|++|+++++.+++. ++++
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 98 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAG---WSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATL 98 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999 899999998665555444332 3577889999999998888764 4689
Q ss_pred CEEEEcccccCc-c----ccccChhhhhhcccccchHHHHHhh----hhccCC-eEEEeeccccccCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVP-R----VCENDPDSAMSINVPSSLVNWLSSF----TENKEN-LLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 78 d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~-~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
|+||||||.... . .+.+.++..+++|+.|++ .+.+++ ++.+.+ +||++||...+.+.+.
T Consensus 99 D~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~~~---------- 167 (272)
T 2nwq_A 99 RGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLL-YSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPG---------- 167 (272)
T ss_dssp CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHCTTCEEEEECCGGGTSCCTT----------
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcEEEEeCCchhccCCCC----------
Confidence 999999997542 1 123456778999999986 655544 455667 9999999887755432
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.||.+++.+.+.++. ++.+++|+.+..+......... ...... .. ....++.++|
T Consensus 168 ~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~--~~~~~~---------~~--~~~~~~~ped 234 (272)
T 2nwq_A 168 SHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGD--QARYDK---------TY--AGAHPIQPED 234 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC---------------------------------CCCCBCHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccc--hHHHHH---------hh--ccCCCCCHHH
Confidence 57899999999999988754 4577999988765321100000 000000 00 0112578999
Q ss_pred HHHHHHHHHhcc
Q 022280 221 VVKIILALTNRW 232 (300)
Q Consensus 221 ~a~~~~~~~~~~ 232 (300)
+|+++++++...
T Consensus 235 vA~~v~~l~s~~ 246 (272)
T 2nwq_A 235 IAETIFWIMNQP 246 (272)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHhCCC
Confidence 999999999863
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=176.24 Aligned_cols=217 Identities=14% Similarity=0.112 Sum_probs=154.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhh-ccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~-~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d 78 (300)
+||++|||||+|+||++++++|++ .| +.|++.+|+.+.. ...+.++++|++|+++++.+++.. +++|
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g---~~v~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id 72 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN---HTVINIDIQQSFS-------AENLKFIKADLTKQQDITNVLDIIKNVSFD 72 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT---EEEEEEESSCCCC-------CTTEEEEECCTTCHHHHHHHHHHTTTCCEE
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC---cEEEEeccccccc-------cccceEEecCcCCHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999 77 8899888875421 134567899999999988877543 4799
Q ss_pred EEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhccC--CeEEEeeccccccCCCCCCCCCCCCCCCChhH
Q 022280 79 VVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTENKE--NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYG 152 (300)
Q Consensus 79 ~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~ 152 (300)
++|||||..... .+.+.++..+++|+.|++ .+++++...-. ++||++||...+.+.+. ...|+
T Consensus 73 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~----------~~~Y~ 141 (244)
T 4e4y_A 73 GIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSI-YFIKGLENNLKVGASIVFNGSDQCFIAKPN----------SFAYT 141 (244)
T ss_dssp EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHH-HHHHHTGGGEEEEEEEEEECCGGGTCCCTT----------BHHHH
T ss_pred EEEECCccCCCCCcccCCHHHHHHHHHHccHHHH-HHHHHHHHHhccCcEEEEECCHHHccCCCC----------CchhH
Confidence 999999986432 233456788999999997 88888776322 48999999888765443 67899
Q ss_pred HHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh-cCC----ce--eeccCcccCceeH
Q 022280 153 KSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLS-KGE----KV--EFFHDECRCPVYV 218 (300)
Q Consensus 153 ~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~----~~--~~~~~~~~~~i~v 218 (300)
.||.+.+.+.+.++ .++.+++|+.+..+... .+...... .+. .. .......+.+.++
T Consensus 142 asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p 212 (244)
T 4e4y_A 142 LSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYR---------NLIQKYANNVGISFDEAQKQEEKEFPLNRIAQP 212 (244)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHH---------HHHHHHHHHHTCCHHHHHHHHHTTSTTSSCBCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhH---------HHHHhhhhhcCCCHHHHHHHHhhcCCCCCCcCH
Confidence 99999999988664 35678999988754210 11100000 000 00 0001234578999
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+|+|+++++++...... ..++++++++|..
T Consensus 213 ~dvA~~v~~l~s~~~~~--itG~~i~vdGG~~ 242 (244)
T 4e4y_A 213 QEIAELVIFLLSDKSKF--MTGGLIPIDGGYT 242 (244)
T ss_dssp HHHHHHHHHHHSGGGTT--CCSCEEEESTTGG
T ss_pred HHHHHHHHHHhcCcccc--ccCCeEeECCCcc
Confidence 99999999999764321 1133899988754
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-24 Score=185.93 Aligned_cols=217 Identities=14% Similarity=0.149 Sum_probs=151.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC----------CCchhhhhhc---CCCceeEEEeecCCchhHH
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS----------TPLPQLLLDA---LPHSFVFFDVDLKSGSGFD 68 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~----------~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~ 68 (300)
.++++|||||+|+||+++++.|+++| ++|++++|+ .+....+.+. .+..+.++.+|++|.+++.
T Consensus 26 ~gk~vlVTGas~GIG~aia~~la~~G---~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 102 (322)
T 3qlj_A 26 DGRVVIVTGAGGGIGRAHALAFAAEG---ARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAA 102 (322)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 46789999999999999999999999 899999886 3333333322 2456778899999999866
Q ss_pred HHHH----hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhc----c------CCeEEEeeccc
Q 022280 69 AVAL----KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTEN----K------ENLLIHLSTDQ 130 (300)
Q Consensus 69 ~~~~----~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~----~------~~~~v~~SS~~ 130 (300)
++++ .++++|+||||||..... .+.+.++..+++|+.|++ .+++++... + .++||++||..
T Consensus 103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~ 181 (322)
T 3qlj_A 103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHF-ATMRHAAAYWRGLSKAGKAVDGRIINTSSGA 181 (322)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHHccccCCCCCcEEEEEcCHH
Confidence 6554 467999999999986542 233456788999999996 777766432 1 14999999988
Q ss_pred cccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC
Q 022280 131 VYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE 203 (300)
Q Consensus 131 ~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 203 (300)
.+.+... ...|+.||.+++.+.+.++. ++..++|+ +..+........ ...
T Consensus 182 ~~~~~~~----------~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~-----~~~------- 238 (322)
T 3qlj_A 182 GLQGSVG----------QGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAE-----MMA------- 238 (322)
T ss_dssp HHHCBTT----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC---------------
T ss_pred HccCCCC----------CccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhh-----hhh-------
Confidence 7755443 67899999999999887654 45667887 543321111000 000
Q ss_pred ceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 204 KVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 204 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
.......+++++|+|+++++++...... ..+.+|++++|...
T Consensus 239 ----~~~~~~~~~~pedva~~v~~L~s~~~~~--itG~~i~vdGG~~~ 280 (322)
T 3qlj_A 239 ----TQDQDFDAMAPENVSPLVVWLGSAEARD--VTGKVFEVEGGKIR 280 (322)
T ss_dssp ---------CCTTCGGGTHHHHHHHTSGGGGG--CCSCEEEEETTEEE
T ss_pred ----ccccccCCCCHHHHHHHHHHHhCccccC--CCCCEEEECCCccc
Confidence 0112235678999999999999764321 12338999888754
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=180.48 Aligned_cols=219 Identities=16% Similarity=0.147 Sum_probs=156.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecC-CCCCchhhhhhc----CCCceeEEEeecCCch-----------
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH-HSTPLPQLLLDA----LPHSFVFFDVDLKSGS----------- 65 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~-r~~~~~~~~~~~----~~~~~~~~~~D~~~~~----------- 65 (300)
.+|++|||||+|+||+++++.|+++| ++|++++ |+.+....+.+. .+..+.++.+|++|.+
T Consensus 45 ~~k~~lVTGas~GIG~aia~~La~~G---~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 121 (328)
T 2qhx_A 45 TVPVALVTGAAKRLGRSIAEGLHAEG---YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSA 121 (328)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------C
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccc
Confidence 45789999999999999999999999 8999998 876554443332 2456788999999998
Q ss_pred ------hHHHHHH----hcCCCCEEEEcccccCccc----c--------------ccChhhhhhcccccchHHHHHhhh-
Q 022280 66 ------GFDAVAL----KFGQPDVVVNCAALSVPRV----C--------------ENDPDSAMSINVPSSLVNWLSSFT- 116 (300)
Q Consensus 66 ------~~~~~~~----~~~~~d~vih~a~~~~~~~----~--------------~~~~~~~~~~nv~~~~~~l~~~~~- 116 (300)
+++++++ .++++|+||||||...... . .+.++..+++|+.+++ .+++++.
T Consensus 122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~ 200 (328)
T 2qhx_A 122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPY-FLIKAFAH 200 (328)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHH-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 7666554 4578999999999764321 1 3345678899999996 7766655
Q ss_pred ---hcc------CCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCC
Q 022280 117 ---ENK------ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGP 180 (300)
Q Consensus 117 ---~~~------~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~ 180 (300)
+.+ .++||++||...+.+... ...|+.||.+++.+.+.++. ++.+++|+.|..+
T Consensus 201 ~m~~~~~~~~~~~g~IV~isS~~~~~~~~~----------~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~ 270 (328)
T 2qhx_A 201 RVAGTPAKHRGTNYSIINMVDAMTNQPLLG----------YTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV 270 (328)
T ss_dssp HHHHSCGGGSCSCEEEEEECCTTTTSCCTT----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC
T ss_pred HHHhcCCcCCCCCcEEEEECchhhccCCCC----------cHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCC
Confidence 334 569999999887765433 67899999999998876643 5678999998876
Q ss_pred CCCCCCCCCchHHHHHHHHhcCCceeeccCccc-CceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR-CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
. . ... ....... ... ... .+..++|+|+++++++...... ..+.++++.+|..+
T Consensus 271 ~-~-----~~~-~~~~~~~-~~~-------p~~~r~~~pedvA~~v~~l~s~~~~~--itG~~i~vdGG~~~ 325 (328)
T 2qhx_A 271 D-D-----MPP-AVWEGHR-SKV-------PLYQRDSSAAEVSDVVIFLCSSKAKY--ITGTCVKVDGGYSL 325 (328)
T ss_dssp C-C-----SCH-HHHHHHH-TTC-------TTTTSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGG
T ss_pred c-c-----ccH-HHHHHHH-hhC-------CCCCCCCCHHHHHHHHHHHhCccccC--ccCcEEEECCCccc
Confidence 5 1 111 2222221 111 123 5788999999999999753211 11338999888544
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=178.25 Aligned_cols=225 Identities=14% Similarity=0.114 Sum_probs=155.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhh---hcCCCceeEEEeecCCchhHHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLL---DALPHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
|.+|++|||||+|+||++++++|+++| ++|++.+++.. ....+. ...+..+.++.+|++|.+++.++++
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLG---AKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999 89998776533 223222 2335678889999999998766554
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhcc--CCeEEEeecccc-ccCCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTENK--ENLLIHLSTDQV-YEGVKSFYKEEDEI 145 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~~--~~~~v~~SS~~~-~~~~~~~~~E~~~~ 145 (300)
+++++|++|||||...... +.+.++..+++|+.|++ ++++++...- .++||++||... ..+.+
T Consensus 93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 162 (270)
T 3is3_A 93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQF-FVAREAYRHLTEGGRIVLTSSNTSKDFSVP--------- 162 (270)
T ss_dssp HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHCCTTCEEEEECCTTTTTCCCT---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhcCCeEEEEeCchhccCCCC---------
Confidence 4679999999999865422 34456788999999997 8888877642 349999999763 22221
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCC----CCC---CCchHHHHHHHHhcCCceeeccCc
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTIS----PVP---KSLPIQWIDSVLSKGEKVEFFHDE 211 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
+...|+.||.+.+.+.+.++. ++..++|+.+..+.... ..+ ...... ....... ..+
T Consensus 163 -~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~p 233 (270)
T 3is3_A 163 -KHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQ-RQQMAAH-------ASP 233 (270)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHH-HHHHHHH-------HST
T ss_pred -CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHH-HHHHHHh-------cCC
Confidence 367899999999998876543 56779999887664210 000 000111 1111100 123
Q ss_pred ccCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 212 CRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+.+.+++|+|+++++++...... ..++++++++|.
T Consensus 234 ~~r~~~p~dvA~~v~~L~s~~~~~--itG~~i~vdGG~ 269 (270)
T 3is3_A 234 LHRNGWPQDVANVVGFLVSKEGEW--VNGKVLTLDGGA 269 (270)
T ss_dssp TCSCBCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTC
T ss_pred CCCCCCHHHHHHHHHHHcCCccCC--ccCcEEEeCCCC
Confidence 457889999999999999753221 113389998874
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-24 Score=176.29 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=144.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcC-CCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFG-QPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~~d~vi 81 (300)
||++|||||+|+||++++++|+++| ++|++++|+.+....+.+.++..+.++.+|+++.++++.+++... .+|+||
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv 77 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEG---KATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVV 77 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred CCEEEEecCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence 5789999999999999999999999 899999999777777777777778889999999999999888652 359999
Q ss_pred EcccccCccc----cccChhhhhhcccccchHHHHHhhhhc---cCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHH
Q 022280 82 NCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN---KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKS 154 (300)
Q Consensus 82 h~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~s 154 (300)
|+||...... ..+.++..+++|+.|++ .+++++... ...+||++||...+.+... ...|+.|
T Consensus 78 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~----------~~~Y~as 146 (230)
T 3guy_A 78 HSAGSGYFGLLQEQDPEQIQTLIENNLSSAI-NVLRELVKRYKDQPVNVVMIMSTAAQQPKAQ----------ESTYCAV 146 (230)
T ss_dssp ECCCCCCCSCGGGSCHHHHHHHHHHHHHHHH-HHHHHHHHHHTTSCCEEEEECCGGGTSCCTT----------CHHHHHH
T ss_pred EeCCcCCCCccccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCeEEEEeecccCCCCCC----------CchhHHH
Confidence 9999764322 23345678999999996 777776542 1229999999888765443 6799999
Q ss_pred HHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHH
Q 022280 155 KVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILA 227 (300)
Q Consensus 155 K~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 227 (300)
|.+.+.+.+.++. ++..++||.+..+.. .... . . .....+.+++|+|+++++
T Consensus 147 Kaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~-------------~~~~-~--~-----~~~~~~~~~~dvA~~i~~ 205 (230)
T 3guy_A 147 KWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFW-------------ETSG-K--S-----LDTSSFMSAEDAALMIHG 205 (230)
T ss_dssp HHHHHHHHHHHHHHTTTSSCEEEEEEECCC-------------------------------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHH-------------HhcC-C--C-----CCcccCCCHHHHHHHHHH
Confidence 9999998887643 456677777754321 0000 0 0 123467899999999999
Q ss_pred HHhccc
Q 022280 228 LTNRWL 233 (300)
Q Consensus 228 ~~~~~~ 233 (300)
++.++.
T Consensus 206 l~~~~~ 211 (230)
T 3guy_A 206 ALANIG 211 (230)
T ss_dssp HCCEET
T ss_pred HHhCcC
Confidence 998643
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-24 Score=179.61 Aligned_cols=224 Identities=15% Similarity=0.088 Sum_probs=152.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|++|++|||||+|+||+++++.|+++| ++|++++|+.+....+.+.+ +..+.++.+|++|++++..+++ .
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEG---TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD 81 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999999 89999999865544433322 4467788999999988665554 4
Q ss_pred cCCCCEEEEccccc-Ccc----ccccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALS-VPR----VCENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~-~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|+||||||.. ... ...+.++..+++|+.+++ ++++++.. .+.++||++||...+.+.+.
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 153 (262)
T 1zem_A 82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAF-HVLKAVSRQMITQNYGRIVNTASMAGVKGPPN------- 153 (262)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCHHHHSCCTT-------
T ss_pred hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCcEEEEEcchhhccCCCC-------
Confidence 67899999999975 221 123456788999999996 77766554 45679999999887655433
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCC----------CCCCchHH-HHHHHHhcCCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISP----------VPKSLPIQ-WIDSVLSKGEKVE 206 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~ 206 (300)
...|+.||.+.+.+.+.++ .++.+++|+.+..+..... ........ +... +..
T Consensus 154 ---~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----- 224 (262)
T 1zem_A 154 ---MAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQ-MIG----- 224 (262)
T ss_dssp ---BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHH-HHH-----
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHH-HHh-----
Confidence 5689999999998887654 2567899988754321000 00000000 1110 100
Q ss_pred eccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 207 FFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 207 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
......+..++|+|+++++++...... ..+.++++.+|
T Consensus 225 --~~p~~r~~~p~dvA~~v~~l~s~~~~~--itG~~i~vdGG 262 (262)
T 1zem_A 225 --SVPMRRYGDINEIPGVVAFLLGDDSSF--MTGVNLPIAGG 262 (262)
T ss_dssp --TSTTSSCBCGGGSHHHHHHHHSGGGTT--CCSCEEEESCC
T ss_pred --cCCCCCCcCHHHHHHHHHHHcCchhcC--cCCcEEecCCC
Confidence 012346789999999999999753221 11337777654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=173.58 Aligned_cols=205 Identities=14% Similarity=0.143 Sum_probs=147.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|++|++|||||+|+||+++++.|+++| ++|++++|+++....+.+.+ +..+.++.+|++|+++++.+++ .
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEG---AAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999 89999999865554443322 4567788999999998766654 4
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||...... +.+.++..+++|+.|++ ++++++. +.+ ++||++||...+.+.+.
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~-------- 151 (247)
T 2jah_A 82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLM-YMTRAALPHLLRSK-GTVVQMSSIAGRVNVRN-------- 151 (247)
T ss_dssp HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHT-CEEEEECCGGGTCCCTT--------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHCC-CEEEEEccHHhcCCCCC--------
Confidence 678999999999764321 23345678999999996 7766654 345 79999999887655433
Q ss_pred CCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+.+.+.+.++ .++.+++|+.+..+..... .. .. ....... . .+ ...++++
T Consensus 152 --~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~---~~-~~~~~~~---~--~~--~~~~~~p 217 (247)
T 2jah_A 152 --AAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHI-TH---TA-TKEMYEQ---R--IS--QIRKLQA 217 (247)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGC-CC---HH-HHHHHHH---H--TT--TSCCBCH
T ss_pred --CcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcc-cc---hh-hHHHHHh---c--cc--ccCCCCH
Confidence 6789999999998887653 4678899999977642111 10 11 1111110 0 01 1115899
Q ss_pred HHHHHHHHHHHhcc
Q 022280 219 RDVVKIILALTNRW 232 (300)
Q Consensus 219 ~D~a~~~~~~~~~~ 232 (300)
+|+|+++++++..+
T Consensus 218 edvA~~v~~l~s~~ 231 (247)
T 2jah_A 218 QDIAEAVRYAVTAP 231 (247)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999863
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=176.11 Aligned_cols=218 Identities=15% Similarity=0.107 Sum_probs=150.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhh---hcCCCceeEEEeecCCchhHHHHHH----hc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLL---DALPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
+|++|||||+|+||++++++|+++| ++|++.+++ .+....+. ...+..+.++.+|++|+++++++++ .+
T Consensus 27 ~k~~lVTGas~GIG~aia~~la~~G---~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 27 NKVAIVTGASRGIGAAIAARLASDG---FTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHT---CEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999 889887554 33333332 2335667789999999998766654 45
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+++|++|||||...... ..+.++..+++|+.|++ ++++++... ..++||++||...+.+.+. .
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~ 172 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTF-NTLREAAQRLRVGGRIINMSTSQVGLLHPS----------Y 172 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHHHEEEEEEEEEECCTHHHHCCTT----------C
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCeEEEEeChhhccCCCC----------c
Confidence 79999999999865432 22345678889999996 887776652 2359999999887665433 6
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.||.+.+.+.+.++. ++..++|+.+..+....... .... ..+.. ..+...+.+++|+
T Consensus 173 ~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~----~~~~-~~~~~-------~~p~~r~~~pedv 240 (267)
T 3u5t_A 173 GIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKS----DEVR-DRFAK-------LAPLERLGTPQDI 240 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC---------------CH-HHHHT-------SSTTCSCBCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCC----HHHH-HHHHh-------cCCCCCCcCHHHH
Confidence 7899999999999887653 45678888886553211000 0001 11101 1234578899999
Q ss_pred HHHHHHHHhccccccccccceeeecCC
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
|+++++++...... ..++++++.+|
T Consensus 241 A~~v~~L~s~~~~~--itG~~i~vdGG 265 (267)
T 3u5t_A 241 AGAVAFLAGPDGAW--VNGQVLRANGG 265 (267)
T ss_dssp HHHHHHHHSTTTTT--CCSEEEEESSS
T ss_pred HHHHHHHhCccccC--ccCCEEEeCCC
Confidence 99999999753221 12338888876
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-24 Score=181.71 Aligned_cols=195 Identities=14% Similarity=0.094 Sum_probs=145.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|++|+||||||+|+||+++++.|+++| ++|++++|+++....+.+. .+..+.++.+|++|.++++.+++ .
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 105 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLK---SKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE 105 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999 8999999986554443332 24567889999999988766654 4
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|+||||||...... ..+.++..+++|+.+++ ++++.+ ++.+.++||++||...+.+...
T Consensus 106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 176 (272)
T 1yb1_A 106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF-WTTKAFLPAMTKNNHGHIVTVASAAGHVSVPF-------- 176 (272)
T ss_dssp TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEEECCCC-CCCHHH--------
T ss_pred CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCEEEEEechhhcCCCCC--------
Confidence 578999999999764321 22345678999999986 655554 4456789999999988765433
Q ss_pred CCCChhHHHHHHHHHHHHHHc----------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 146 APVNVYGKSKVAAEKFIYEKC----------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~----------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|+.||.+++.+++.++ .++.++||+.+.++.... . . .....+
T Consensus 177 --~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~----~----~---------------~~~~~~ 231 (272)
T 1yb1_A 177 --LLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN----P----S---------------TSLGPT 231 (272)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC----T----H---------------HHHCCC
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc----c----c---------------ccccCC
Confidence 5689999999999887543 356789999887664210 0 0 012357
Q ss_pred eeHHHHHHHHHHHHhcc
Q 022280 216 VYVRDVVKIILALTNRW 232 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~ 232 (300)
++++|+|++++.++..+
T Consensus 232 ~~~~dva~~i~~~~~~~ 248 (272)
T 1yb1_A 232 LEPEEVVNRLMHGILTE 248 (272)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 89999999999999874
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-24 Score=177.73 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=155.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHH----Hhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVA----LKF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~----~~~ 74 (300)
++|++|||||+++||+++++.|+++| ++|++.+|+++...+..++ .+..+..+++|++|++++++++ +++
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~G---a~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAG---ARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT---CEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 57999999999999999999999999 8999999987665544333 2556778899999999866555 457
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hh-ccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TE-NKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~-~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|++|||||...... +.+.++..+++|+.|++ .+.+++ .+ .+.++||++||.....+.+.
T Consensus 85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~-~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~-------- 155 (255)
T 4g81_D 85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAF-LVSRSAAKRMIARNSGGKIINIGSLTSQAARPT-------- 155 (255)
T ss_dssp CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTT--------
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHccCCCEEEEEeehhhcCCCCC--------
Confidence 89999999999875432 34567889999999996 655543 33 34569999999887766544
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.++..+.+.++. ++..+-||.|.-+....... ... ..+.+... .++..+..+
T Consensus 156 --~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~---~~~-~~~~~~~~-------~Pl~R~g~p 222 (255)
T 4g81_D 156 --VAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIE---DKQ-FDSWVKSS-------TPSQRWGRP 222 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHT---CHH-HHHHHHHH-------STTCSCBCG
T ss_pred --chhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccC---CHH-HHHHHHhC-------CCCCCCcCH
Confidence 67899999999998887765 34556676664331100000 001 11111111 134567889
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+|.++++|+...... -.++++.+.+|-
T Consensus 223 ediA~~v~fL~S~~a~~--iTG~~i~VDGG~ 251 (255)
T 4g81_D 223 EELIGTAIFLSSKASDY--INGQIIYVDGGW 251 (255)
T ss_dssp GGGHHHHHHHHSGGGTT--CCSCEEEESTTG
T ss_pred HHHHHHHHHHhCchhCC--CcCCEEEECCCe
Confidence 99999999999653221 113388888873
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-24 Score=181.32 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=143.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~---- 72 (300)
.++++|||||+|+||+++++.|+++| ++|++++|+++....+.+.+ +..+.++.+|++|+++++.+++
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 107 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQG---LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 107 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999 89999999865544443321 2456778999999998776655
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccch---HHHHHhhhhccC--CeEEEeeccccccCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSL---VNWLSSFTENKE--NLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~---~~l~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
.++++|+||||||...... ..+.++..+++|+.+++ ..+++.+++.+. ++||++||...+....
T Consensus 108 ~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~~------- 180 (279)
T 1xg5_A 108 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLP------- 180 (279)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCS-------
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccCC-------
Confidence 4578999999999764322 23345678999999953 256667777665 7999999988774211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHc---------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKC---------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~---------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
..+...|+.||.+++.+++.++ .++.+++|+.+.++........ ... ..... .....
T Consensus 181 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~-~~~-~~~~~-----------~~~~~ 246 (279)
T 1xg5_A 181 -LSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDK-DPE-KAAAT-----------YEQMK 246 (279)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTT-CHH-HHHHH-----------HC---
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhccc-Chh-HHhhh-----------ccccc
Confidence 1235689999999998776542 3567899988876531000000 000 00000 01234
Q ss_pred ceeHHHHHHHHHHHHhcc
Q 022280 215 PVYVRDVVKIILALTNRW 232 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~ 232 (300)
+++++|+|++++++++.+
T Consensus 247 ~~~~~dvA~~i~~l~~~~ 264 (279)
T 1xg5_A 247 CLKPEDVAEAVIYVLSTP 264 (279)
T ss_dssp CBCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhcCC
Confidence 789999999999999874
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-24 Score=180.79 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=146.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhh-ccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~-~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
++++||||||+|+||+++++.|++ +| ++|++++|+.+......+.+ +..+.++.+|++|.++++.+++ .
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFS---GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS---SEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcC---CeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999 89 89999999865444333222 4567789999999988776665 4
Q ss_pred cCCCCEEEEcccccCcccc----ccChhhhhhcccccchHHHHHhhhhcc--CCeEEEeeccccccCCC-----------
Q 022280 74 FGQPDVVVNCAALSVPRVC----ENDPDSAMSINVPSSLVNWLSSFTENK--ENLLIHLSTDQVYEGVK----------- 136 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~----------- 136 (300)
++++|+||||||....... .+.++..+++|+.|++ ++++++.+.- .++||++||...+.+..
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~ 158 (276)
T 1wma_A 80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTR-DVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFR 158 (276)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHH-HHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHH-HHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcc
Confidence 5689999999997643221 2345678999999996 9988887642 24999999987764310
Q ss_pred -CCCCCCC-------------------CCCCCChhHHHHHHHHHHHHHHc-----------CCceeEeeeeeeCCCCCCC
Q 022280 137 -SFYKEED-------------------EIAPVNVYGKSKVAAEKFIYEKC-----------SNFAILRSSIIYGPQTISP 185 (300)
Q Consensus 137 -~~~~E~~-------------------~~~p~~~Y~~sK~~~e~~~~~~~-----------~~~~ilR~~~v~G~~~~~~ 185 (300)
..++|++ +..|...|+.||.+.+.+++.++ .++.+++|+.|..+....
T Consensus 159 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~- 237 (276)
T 1wma_A 159 SETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP- 237 (276)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT-
T ss_pred ccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc-
Confidence 1233322 12345899999999998886543 356778888886543210
Q ss_pred CCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 186 VPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
..+.+++|+|+++++++..+
T Consensus 238 ---------------------------~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 238 ---------------------------KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp ---------------------------TCSBCHHHHTHHHHHHHSCC
T ss_pred ---------------------------cccCChhHhhhhHhhhhcCc
Confidence 13678999999999999754
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-24 Score=180.80 Aligned_cols=206 Identities=15% Similarity=0.113 Sum_probs=131.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchh---HHHHHHhcCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSG---FDAVALKFGQP 77 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~~~~~~ 77 (300)
|++|++|||||+|+||++++++|++ | +.|++++|+++....+.+ ...+.++.+|+++.++ +.+.++.++++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g---~~v~~~~r~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i 76 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-D---HIVYALGRNPEHLAALAE--IEGVEPIESDIVKEVLEEGGVDKLKNLDHV 76 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-T---SEEEEEESCHHHHHHHHT--STTEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-C---CeEEEEeCCHHHHHHHHh--hcCCcceecccchHHHHHHHHHHHHhcCCC
Confidence 3578999999999999999999988 8 889999998666555544 2457778999988643 33344556789
Q ss_pred CEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 78 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
|+||||||...... +.+.++..+++|+.+++ .+++++. +.+ +++|++||...+.+.+. ..
T Consensus 77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~-~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~----------~~ 144 (245)
T 3e9n_A 77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPA-ELSRQLLPALRAAS-GCVIYINSGAGNGPHPG----------NT 144 (245)
T ss_dssp SEEEECC----------CHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHT-CEEEEEC--------------------CH
T ss_pred CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHhhcC-CeEEEEcCcccccCCCC----------ch
Confidence 99999999865432 23346678999999986 6666553 334 69999999988776543 67
Q ss_pred hhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
.|+.||.+.+.+.+.++. ++.+++|+.+.++.... +.... ... .....+++++|+|
T Consensus 145 ~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~---------~~~~~---~~~-----~~~~~~~~p~dvA 207 (245)
T 3e9n_A 145 IYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQG---------LMDSQ---GTN-----FRPEIYIEPKEIA 207 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------CCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhh---------hhhhh---hcc-----cccccCCCHHHHH
Confidence 899999999998886543 56779998887653211 01000 000 1224578999999
Q ss_pred HHHHHHHhccccccccccceeeec
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVG 246 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~ 246 (300)
++++++++.+... .++|+.
T Consensus 208 ~~i~~l~~~~~~~-----~~~~i~ 226 (245)
T 3e9n_A 208 NAIRFVIDAGETT-----QITNVD 226 (245)
T ss_dssp HHHHHHHTSCTTE-----EEEEEE
T ss_pred HHHHHHHcCCCcc-----ceeeeE
Confidence 9999999886433 267763
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=174.49 Aligned_cols=223 Identities=14% Similarity=0.112 Sum_probs=155.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHHHhc--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALKF-- 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~-- 74 (300)
|.+|++|||||+|+||++++++|+++| ++|++. .|+.+....... ..+..+.++.+|++|.++++.+++..
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDG---ALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDN 81 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999 888886 555444333322 23556778899999998877666542
Q ss_pred --------CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCC
Q 022280 75 --------GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 75 --------~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
+++|+||||||...... ..+.++..+++|+.+++ .+++++... +.++||++||...+.+.+.
T Consensus 82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~iv~isS~~~~~~~~~--- 157 (255)
T 3icc_A 82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPF-FIIQQALSRLRDNSRIINISSAATRISLPD--- 157 (255)
T ss_dssp HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHTTTEEEEEEEEEECCGGGTSCCTT---
T ss_pred HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHH-HHHHHHHHhhCCCCEEEEeCChhhccCCCC---
Confidence 24999999999864332 22345678899999997 888887763 3459999999887766443
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+.+.+.+.++. ++..++|+.+..+........ .......... ...+
T Consensus 158 -------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~----~~~~~~~~~~-------~~~~ 219 (255)
T 3icc_A 158 -------FIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSD----PMMKQYATTI-------SAFN 219 (255)
T ss_dssp -------BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTS----HHHHHHHHHT-------STTS
T ss_pred -------cchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhccc----HHHHHhhhcc-------CCcC
Confidence 67899999999998876543 567799998876643211110 1111111111 2345
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
.+.+++|+|+++++++...... ..++++++++|..
T Consensus 220 ~~~~~~dva~~~~~l~s~~~~~--~tG~~i~vdgG~~ 254 (255)
T 3icc_A 220 RLGEVEDIADTAAFLASPDSRW--VTGQLIDVSGGSC 254 (255)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESSSTT
T ss_pred CCCCHHHHHHHHHHHhCcccCC--ccCCEEEecCCee
Confidence 6789999999999999754221 1133899988753
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=173.34 Aligned_cols=223 Identities=11% Similarity=0.053 Sum_probs=156.6
Q ss_pred CCCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCCCch-hhh----hhcCCCceeEEEeecCCchhHHHHHH-
Q 022280 1 MSKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-QLL----LDALPHSFVFFDVDLKSGSGFDAVAL- 72 (300)
Q Consensus 1 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~- 72 (300)
|+++++|||||+ |+||++++++|+++| ++|++++|+.+.. ... ....+..+.++++|++|.++++.+++
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G---~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMG---AAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKD 94 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTS---CEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCC---CeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHH
Confidence 357899999999 999999999999999 8999998886543 222 22335678889999999998766554
Q ss_pred ---hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCC
Q 022280 73 ---KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 ---~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
.++++|+||||||...... +.+.++..+++|+.+++ ++++++ ++.+.++||++||...+....
T Consensus 95 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 168 (267)
T 3gdg_A 95 VVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTF-HCAKAVGHHFKERGTGSLVITASMSGHIANF----- 168 (267)
T ss_dssp HHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEECCGGGTSCCS-----
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHH-HHHHHHHHHHHHcCCceEEEEccccccccCC-----
Confidence 4578999999999865432 33456778999999996 777766 455667999999977654421
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
+.+...|+.||.+.+.+.+.++. ++..+.|+.+..+-. ........ ..+... .+.+.+
T Consensus 169 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~-----~~~~~~~~-~~~~~~-------~~~~r~ 232 (267)
T 3gdg_A 169 ---PQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLS-----DFVPKETQ-QLWHSM-------IPMGRD 232 (267)
T ss_dssp ---SSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCG-----GGSCHHHH-HHHHTT-------STTSSC
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchh-----hhCCHHHH-HHHHhc-------CCCCCC
Confidence 11367899999999999887653 345577777654321 11112222 111111 234578
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
.+++|+|+++++++...... ..+.++++++|..
T Consensus 233 ~~~~dva~~~~~l~s~~~~~--itG~~i~vdgG~~ 265 (267)
T 3gdg_A 233 GLAKELKGAYVYFASDASTY--TTGADLLIDGGYT 265 (267)
T ss_dssp EETHHHHHHHHHHHSTTCTT--CCSCEEEESTTGG
T ss_pred cCHHHHHhHhheeecCcccc--ccCCEEEECCcee
Confidence 89999999999999753211 1133899988754
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=180.27 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=144.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
.+++||||||+|+||++++++|+++| ++|++++|+.+....+.+.+ +..+.++.+|++|.++++++++ .+
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRG---ARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999 89999999876655444332 4567889999999998766654 45
Q ss_pred CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hcc-CCeEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENK-ENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|+||||||+.... .+.+.++..+++|+.|++ ++++++. +.+ .++||++||...+.+...
T Consensus 107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 177 (301)
T 3tjr_A 107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSI-HAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAG-------- 177 (301)
T ss_dssp SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTT--------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCC--------
Confidence 7899999999986432 233456678999999996 7777754 344 469999999888765443
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHH----HHhcCCceeecc--Ccc
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDS----VLSKGEKVEFFH--DEC 212 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~ 212 (300)
...|+.||.+.+.+.+.++. ++.+++|+.|..+.. ...... ......+...++ ...
T Consensus 178 --~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (301)
T 3tjr_A 178 --LGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLV---------SNSERIRGADYGMSATPEGAFGPLPTQ 246 (301)
T ss_dssp --BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHH---------HHHHHHC--------------------
T ss_pred --chHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccc---------cccccccchhhccccChhhhccccccc
Confidence 67899999999998877653 456677777654321 000000 000000111111 123
Q ss_pred cCceeHHHHHHHHHHHHhcc
Q 022280 213 RCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~ 232 (300)
..+++++|+|++++.+++.+
T Consensus 247 ~~~~~pedvA~~i~~~l~~~ 266 (301)
T 3tjr_A 247 DESVSADDVARLTADAILAN 266 (301)
T ss_dssp --CCCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHhcC
Confidence 56899999999999999883
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-24 Score=180.03 Aligned_cols=221 Identities=14% Similarity=0.150 Sum_probs=149.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc---hhhhhh---cCCCceeEEEeecCCchhHHHHHH---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL---PQLLLD---ALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~---~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
+++++|||||+|+||++++++|+++| ++|++.+|+... ...+.+ ..+..+.++.+|++|+++++.+++
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALES---VNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSS---CEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 899998775332 222222 224567889999999998766664
Q ss_pred -hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
.++++|++|||||...... +.+.++..+++|+.+++ .+++++... +.+++|++||...+.+...
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~m~~~g~iv~isS~~~~~~~~~-------- 157 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAY-FFIKQAAKHMNPNGHIITIATSLLAAYTGF-------- 157 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHTTEEEEEEEEEECCCHHHHHHCC--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHhhcCCCEEEEEechhhccCCCC--------
Confidence 4678999999999765432 23445678899999997 888887763 4469999999887766543
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCce
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPV 216 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i 216 (300)
...|+.||.+.+.+.+.++. ++..++|+.|..+...... ......... ...+.+.
T Consensus 158 --~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--------------~~~~~~~~~~~~~~~r~~ 221 (262)
T 3ksu_A 158 --YSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQE--------------TKESTAFHKSQAMGNQLT 221 (262)
T ss_dssp --CCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC--------------------------CCCCSC
T ss_pred --CchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccC--------------chHHHHHHHhcCcccCCC
Confidence 67899999999998887653 4566788777543110000 000001111 1345688
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCCccCH
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSR 253 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~ 253 (300)
+++|+|+++++++.. .. -..++++++.+|.....
T Consensus 222 ~pedvA~~v~~L~s~-~~--~itG~~i~vdGg~~~~~ 255 (262)
T 3ksu_A 222 KIEDIAPIIKFLTTD-GW--WINGQTIFANGGYTTRE 255 (262)
T ss_dssp CGGGTHHHHHHHHTT-TT--TCCSCEEEESTTCCCC-
T ss_pred CHHHHHHHHHHHcCC-CC--CccCCEEEECCCccCCC
Confidence 999999999999975 21 11234899998875543
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=175.33 Aligned_cols=197 Identities=18% Similarity=0.206 Sum_probs=141.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----C-CceeEEEeecCCchhHHHHHH---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----P-HSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~-~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
+++++|||||+|+||++++++|+++| ++|++++|+.+....+.+.+ + ..+.++.+|++|.+++..+++
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDG---YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHT---CEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 89999999876555444322 2 567789999999988666554
Q ss_pred -hcCCCCEEEEcccccCcc---ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVPR---VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~~---~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
.++++|+||||||..... ...+.++..+++|+.|++ .+++++ ++.+.++||++||...+.+..
T Consensus 83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 153 (250)
T 3nyw_A 83 QKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQY-GILKTVTEIMKVQKNGYIFNVASRAAKYGFA-------- 153 (250)
T ss_dssp HHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECC-------C--------
T ss_pred HhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCeEEEEEccHHhcCCCC--------
Confidence 467899999999986432 223345688999999996 776665 445667999999987654322
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
+...|+.||.+.+.+.+.++. ++..++|+.+..+ +.... ... .....+++
T Consensus 154 --~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~-------------~~~~~---~~~-----~~~~~~~~ 210 (250)
T 3nyw_A 154 --DGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD-------------MAKKA---GTP-----FKDEEMIQ 210 (250)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH-------------HHHHT---TCC-----SCGGGSBC
T ss_pred --CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc-------------hhhhc---CCC-----cccccCCC
Confidence 267899999999998887654 3466777776432 12111 111 12345889
Q ss_pred HHHHHHHHHHHHhccc
Q 022280 218 VRDVVKIILALTNRWL 233 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~ 233 (300)
++|+|+++++++..+.
T Consensus 211 p~dva~~v~~l~s~~~ 226 (250)
T 3nyw_A 211 PDDLLNTIRCLLNLSE 226 (250)
T ss_dssp HHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999998643
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-23 Score=170.25 Aligned_cols=225 Identities=15% Similarity=0.111 Sum_probs=154.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh--hcCCCceeEEEeecCCchhHHHHH----Hhc
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL--DALPHSFVFFDVDLKSGSGFDAVA----LKF 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~----~~~ 74 (300)
|++|++|||||+++||+++++.|+++| .+|++.+|+.+...... ...+.++.++.+|++|++++++++ +++
T Consensus 5 L~gKvalVTGas~GIG~aia~~la~~G---a~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~ 81 (258)
T 4gkb_A 5 LQDKVVIVTGGASGIGGAISMRLAEER---AIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF 81 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999 89999999876543221 222567778999999998765544 567
Q ss_pred CCCCEEEEcccccCcc---ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR---VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~---~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+++|++|||||+.... .+.+.++..+++|+.+++ .+.+++.. .+-++||++||.....+.+. .
T Consensus 82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~-~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~----------~ 150 (258)
T 4gkb_A 82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYY-AMAHYCVPHLKATRGAIVNISSKTAVTGQGN----------T 150 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEECCTHHHHCCSS----------C
T ss_pred CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCeEEEEeehhhccCCCC----------c
Confidence 8999999999986432 234456788999999986 65555432 23369999999887655544 6
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCC-CchHHHHHHHHhcCCceeeccCcc-cCceeHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPK-SLPIQWIDSVLSKGEKVEFFHDEC-RCPVYVR 219 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~ 219 (300)
..|+.||.+++.+.+.++. ++..+-||.|--|-....... ..+.....+.. ... ++ +.+..++
T Consensus 151 ~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~-~~~-------plg~R~g~pe 222 (258)
T 4gkb_A 151 SGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIA-AKV-------PLGRRFTTPD 222 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHH-TTC-------TTTTSCBCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHH-hcC-------CCCCCCcCHH
Confidence 7899999999998887654 456677877754432110000 00000111111 111 22 4678899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|+|.++++|+...... -.++++.+.+|.
T Consensus 223 eiA~~v~fLaS~~a~~--iTG~~i~VDGG~ 250 (258)
T 4gkb_A 223 EIADTAVFLLSPRASH--TTGEWLFVDGGY 250 (258)
T ss_dssp HHHHHHHHHHSGGGTT--CCSCEEEESTTT
T ss_pred HHHHHHHHHhCchhcC--ccCCeEEECCCc
Confidence 9999999999653321 113389998875
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-23 Score=174.83 Aligned_cols=219 Identities=16% Similarity=0.149 Sum_probs=155.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecC-CCCCchhhhhh----cCCCceeEEEeecCCch-----------
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH-HSTPLPQLLLD----ALPHSFVFFDVDLKSGS----------- 65 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~-r~~~~~~~~~~----~~~~~~~~~~~D~~~~~----------- 65 (300)
++|++|||||+|+||+++++.|+++| ++|++++ |+.+....+.+ ..+..+.++++|++|++
T Consensus 8 ~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (291)
T 1e7w_A 8 TVPVALVTGAAKRLGRSIAEGLHAEG---YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSA 84 (291)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCccccccccccccc
Confidence 46899999999999999999999999 8999999 87655444333 22456788999999998
Q ss_pred ------hHHHHHH----hcCCCCEEEEcccccCccc----c--------------ccChhhhhhcccccchHHHHHhhh-
Q 022280 66 ------GFDAVAL----KFGQPDVVVNCAALSVPRV----C--------------ENDPDSAMSINVPSSLVNWLSSFT- 116 (300)
Q Consensus 66 ------~~~~~~~----~~~~~d~vih~a~~~~~~~----~--------------~~~~~~~~~~nv~~~~~~l~~~~~- 116 (300)
++.++++ .++++|+||||||...... . .+.++..+++|+.+++ .+++++.
T Consensus 85 ~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~ 163 (291)
T 1e7w_A 85 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPY-FLIKAFAH 163 (291)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHH-HHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHH-HHHHHHHH
Confidence 7666554 4578999999999764321 1 3345678899999996 7766654
Q ss_pred ---hcc------CCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCC
Q 022280 117 ---ENK------ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGP 180 (300)
Q Consensus 117 ---~~~------~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~ 180 (300)
+.+ .++||++||...+.+.+. ...|+.||.+++.+.+.++. ++..++|+.+..+
T Consensus 164 ~m~~~~~~~~~~~g~Iv~isS~~~~~~~~~----------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~ 233 (291)
T 1e7w_A 164 RVAGTPAKHRGTNYSIINMVDAMTNQPLLG----------YTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV 233 (291)
T ss_dssp HHHTSCGGGSCSCEEEEEECCTTTTSCCTT----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCG
T ss_pred HHHhcCCCCCCCCcEEEEEechhhcCCCCC----------CchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCC
Confidence 334 569999999887765433 67899999999998876643 4567888887544
Q ss_pred CCCCCCCCCchHHHHHHHHhcCCceeeccCccc-CceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR-CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
. . . ...+..... ... ... .+..++|+|+++++++...... ..+.++++.+|..+
T Consensus 234 ~-~--~----~~~~~~~~~-~~~-------p~~~r~~~pedvA~~v~~l~s~~~~~--itG~~i~vdGG~~~ 288 (291)
T 1e7w_A 234 D-D--M----PPAVWEGHR-SKV-------PLYQRDSSAAEVSDVVIFLCSSKAKY--ITGTCVKVDGGYSL 288 (291)
T ss_dssp G-G--S----CHHHHHHHH-TTC-------TTTTSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGG
T ss_pred c-c--C----CHHHHHHHH-hhC-------CCCCCCCCHHHHHHHHHHHhCCcccC--ccCcEEEECCCccc
Confidence 3 1 1 122222221 111 122 5778999999999999753211 12338899887544
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=171.78 Aligned_cols=204 Identities=16% Similarity=0.097 Sum_probs=146.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----c--C
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----F--G 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~--~ 75 (300)
++|++|||||+|+||++++++|+++| ++|++++|+++... ....++.+|++|+++++++++. + +
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g 75 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSRCVQAFRARN---WWVASIDVVENEEA-------SASVIVKMTDSFTEQADQVTAEVGKLLGDQ 75 (241)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESSCCTTS-------SEEEECCCCSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC---CEEEEEeCChhhcc-------CCcEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999 89999999865432 2345678999999887766654 4 6
Q ss_pred CCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 76 ~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
++|+||||||..... ...+.++..+++|+.+++ .+++++... ..++||++||...+.+.+. .
T Consensus 76 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~-~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~ 144 (241)
T 1dhr_A 76 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTST-ISSHLATKHLKEGGLLTLAGAKAALDGTPG----------M 144 (241)
T ss_dssp CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHH-HHHHHHHHHEEEEEEEEEECCGGGGSCCTT----------B
T ss_pred CCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHhhccCCEEEEECCHHHccCCCC----------c
Confidence 899999999976422 223345678899999996 887777652 2259999999888765433 6
Q ss_pred ChhHHHHHHHHHHHHHHcCC---------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 149 NVYGKSKVAAEKFIYEKCSN---------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~---------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
..|+.||.+.+.+.+.++.+ +.+++|+.+-.+ +..... .. .....+++++
T Consensus 145 ~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~-------------~~~~~~-~~-------~~~~~~~~~~ 203 (241)
T 1dhr_A 145 IGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP-------------MNRKSM-PE-------ADFSSWTPLE 203 (241)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH-------------HHHHHS-TT-------SCGGGSEEHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCc-------------cccccC-cc-------hhhccCCCHH
Confidence 78999999999999887654 345777766432 111111 11 1123468899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCC
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|+|+++++++...... ..++.+++.+++
T Consensus 204 ~vA~~v~~l~~~~~~~--~~G~~~~v~g~~ 231 (241)
T 1dhr_A 204 FLVETFHDWITGNKRP--NSGSLIQVVTTD 231 (241)
T ss_dssp HHHHHHHHHHTTTTCC--CTTCEEEEEEET
T ss_pred HHHHHHHHHhcCCCcC--ccceEEEEeCCC
Confidence 9999999999753221 113377776654
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=171.92 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=147.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh--cCCCceeEEEeecCCch-hHHHHHHhcCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD--ALPHSFVFFDVDLKSGS-GFDAVALKFGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~--~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~d~ 79 (300)
||++|||||+|+||+++++.|+++| ++|++++|+.+....+.+ ..+..+..+ |..+.+ .++.+.+.++++|+
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~l~~~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~ 75 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAG---HTVACHDESFKQKDELEAFAETYPQLKPM--SEQEPAELIEAVTSAYGQVDV 75 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT---CEEEECCGGGGSHHHHHHHHHHCTTSEEC--CCCSHHHHHHHHHHHHSCCCE
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHhcCCcEEEE--CHHHHHHHHHHHHHHhCCCCE
Confidence 5789999999999999999999999 899999998765544322 112233322 333322 13344455679999
Q ss_pred EEEccccc-Ccc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 80 VVNCAALS-VPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 80 vih~a~~~-~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
||||||.. ... .+.+.++..+++|+.+++ .+++++. +.+.++||++||...+.+... ...
T Consensus 76 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~~ 144 (254)
T 1zmt_A 76 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPF-ALVNAVASQMKKRKSGHIIFITSATPFGPWKE----------LST 144 (254)
T ss_dssp EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEECCSTTTSCCTT----------CHH
T ss_pred EEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEECCcccccCCCC----------chH
Confidence 99999976 322 123346778999999996 7666654 456679999999887755433 678
Q ss_pred hHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCc---hHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 151 YGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSL---PIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
|+.||.+.+.+.+.++ .++.+++|+.++|+.......... ...+..... . ......+.+++|
T Consensus 145 Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~-~-------~~p~~~~~~p~d 216 (254)
T 1zmt_A 145 YTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVK-K-------VTALQRLGTQKE 216 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHH-H-------HSSSSSCBCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHh-c-------cCCCCCCcCHHH
Confidence 9999999999887653 467889999999886432110000 000111100 0 012345789999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCc
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+|+++++++...... ..++++++.+|..
T Consensus 217 vA~~v~~l~s~~~~~--~tG~~~~vdgG~~ 244 (254)
T 1zmt_A 217 LGELVAFLASGSCDY--LTGQVFWLAGGFP 244 (254)
T ss_dssp HHHHHHHHHTTSCGG--GTTCEEEESTTCC
T ss_pred HHHHHHHHhCcccCC--ccCCEEEECCCch
Confidence 999999999763211 1233899988753
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=170.39 Aligned_cols=209 Identities=15% Similarity=0.097 Sum_probs=142.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHHh----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+.+....+.+.+ +..+.++.+|++|+++++.+++.
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAG---ATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDRE 79 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999 89999999865544443332 45677899999999987776653
Q ss_pred -cCCCCEEEEccc--cc------Cc---cccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCC
Q 022280 74 -FGQPDVVVNCAA--LS------VP---RVCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKS 137 (300)
Q Consensus 74 -~~~~d~vih~a~--~~------~~---~~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~ 137 (300)
++++|+|||||| .. .. ....+.++..+++|+.+++ .+.+. +.+.+.++||++||...+.+.
T Consensus 80 ~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 156 (260)
T 2qq5_A 80 QQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHY-FCSVYGARLMVPAGQGLIVVISSPGSLQYM-- 156 (260)
T ss_dssp HTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHH-HHHHHHHHHHGGGTCCEEEEECCGGGTSCC--
T ss_pred cCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHH-HHHHHHHHHHhhcCCcEEEEEcChhhcCCC--
Confidence 678999999994 32 11 1223346678899999985 55444 445566799999998776432
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC
Q 022280 138 FYKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD 210 (300)
Q Consensus 138 ~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
+...|+.||.+++.+.+.++ .++.+++|+.+..+........ ..... .........
T Consensus 157 ---------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~---~~~~~-----~~~~~~~~~ 219 (260)
T 2qq5_A 157 ---------FNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAK---EEVLQ-----DPVLKQFKS 219 (260)
T ss_dssp ---------SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC----------------------------
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhcc---ccccc-----hhHHHHHHh
Confidence 25689999999999887654 3578899999876542110000 00000 000000000
Q ss_pred cccCceeHHHHHHHHHHHHhcc
Q 022280 211 ECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 211 ~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
....+..++|+|+++++++...
T Consensus 220 ~~~~~~~pe~va~~v~~l~s~~ 241 (260)
T 2qq5_A 220 AFSSAETTELSGKCVVALATDP 241 (260)
T ss_dssp --CHHHHHHHHHHHHHHHHTCT
T ss_pred hhccCCCHHHHHHHHHHHhcCc
Confidence 1122467999999999999764
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-22 Score=167.86 Aligned_cols=196 Identities=14% Similarity=0.120 Sum_probs=143.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc--CCCceeEEEeecCCchhHHHHHHh----c
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA--LPHSFVFFDVDLKSGSGFDAVALK----F 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~----~ 74 (300)
+++|+||||||+|+||++++++|+++|...++|++++|+.+....+.+. ....+.++.+|++|.++++.+++. +
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 98 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT 98 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhc
Confidence 3578999999999999999999999983224799999987654433211 135678899999999987776653 4
Q ss_pred C--CCCEEEEcccccC-c----cccccChhhhhhcccccchHHHHHhhhhc----------c-----CCeEEEeeccccc
Q 022280 75 G--QPDVVVNCAALSV-P----RVCENDPDSAMSINVPSSLVNWLSSFTEN----------K-----ENLLIHLSTDQVY 132 (300)
Q Consensus 75 ~--~~d~vih~a~~~~-~----~~~~~~~~~~~~~nv~~~~~~l~~~~~~~----------~-----~~~~v~~SS~~~~ 132 (300)
+ ++|+||||||... . ....+.++..+++|+.+++ ++++++... + .++||++||...+
T Consensus 99 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~ 177 (267)
T 1sny_A 99 KDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI-MLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS 177 (267)
T ss_dssp GGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred CCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHH-HHHHHHHHHHhhcccccccccccCCCceEEEEeccccc
Confidence 4 6999999999765 2 1223345678999999996 777776542 2 4699999998877
Q ss_pred cCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCce
Q 022280 133 EGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKV 205 (300)
Q Consensus 133 ~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (300)
.+... ..+...|+.||.+++.+++.++ .++.++||+.|..+... .
T Consensus 178 ~~~~~-------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~------------------~--- 229 (267)
T 1sny_A 178 IQGNT-------DGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGG------------------S--- 229 (267)
T ss_dssp STTCC-------SCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTC------------------T---
T ss_pred ccCCC-------CCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCC------------------C---
Confidence 55321 1236689999999999887654 35678998888654211 0
Q ss_pred eeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 206 EFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 206 ~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
..++.++|+|+.++.++...
T Consensus 230 -------~~~~~~~~~a~~~~~~~~~~ 249 (267)
T 1sny_A 230 -------SAPLDVPTSTGQIVQTISKL 249 (267)
T ss_dssp -------TCSBCHHHHHHHHHHHHHHC
T ss_pred -------CCCCCHHHHHHHHHHHHHhc
Confidence 12477999999999999864
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=170.15 Aligned_cols=200 Identities=15% Similarity=0.070 Sum_probs=144.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch-------hhhh---hcCCCceeEEEeecCCchhHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-------QLLL---DALPHSFVFFDVDLKSGSGFDAV 70 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-------~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 70 (300)
|+++++|||||+|+||++++++|+++| ++|++++|+.++. .... ...+..+.++++|++|+++++++
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 83 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADG---ANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAA 83 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTT---CEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 356899999999999999999999999 8999999986632 1222 22256788899999999986665
Q ss_pred HH----hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh----ccCCeEEEeeccccccCCCCC
Q 022280 71 AL----KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSF 138 (300)
Q Consensus 71 ~~----~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~ 138 (300)
++ .++++|++|||||...... +.+.++..+++|+.+++ .+++++.. .+.++||++||...+.+..
T Consensus 84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~-- 160 (285)
T 3sc4_A 84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTY-AVSQSCIPHMKGRDNPHILTLSPPIRLEPKW-- 160 (285)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHH-HHHHHHGGGTTTSSSCEEEECCCCCCCSGGG--
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEECChhhccCCC--
Confidence 54 4679999999999865422 23345678889999996 77776654 3567999999977655431
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCc
Q 022280 139 YKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE 211 (300)
Q Consensus 139 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
.+...|+.||.+.+.+.+.++. ++..++|+.+... .+......... .
T Consensus 161 -------~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t------------~~~~~~~~~~~-------~ 214 (285)
T 3sc4_A 161 -------LRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT------------AAVQNLLGGDE-------A 214 (285)
T ss_dssp -------SCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC------------HHHHHHHTSCC-------C
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc------------HHHHhhccccc-------c
Confidence 1257899999999999887654 3455666522210 22333331111 2
Q ss_pred ccCceeHHHHHHHHHHHHhcc
Q 022280 212 CRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~~ 232 (300)
...+..++|+|+++++++...
T Consensus 215 ~~r~~~pedvA~~~~~l~s~~ 235 (285)
T 3sc4_A 215 MARSRKPEVYADAAYVVLNKP 235 (285)
T ss_dssp CTTCBCTHHHHHHHHHHHTSC
T ss_pred ccCCCCHHHHHHHHHHHhCCc
Confidence 346788999999999999875
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.1e-24 Score=174.49 Aligned_cols=220 Identities=15% Similarity=0.100 Sum_probs=154.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|.+|++|||||+++||+++++.|+++| .+|++.+|+... ........+..+..+.+|++|+++++.+++ ++++|+
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~G---a~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~-~g~iDi 82 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAG---AEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFT-DAGFDI 82 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSST-TTCCCE
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcC---CEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHH-hCCCCE
Confidence 357999999999999999999999999 899999998542 233334446677889999999998877765 469999
Q ss_pred EEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhcc-CCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 80 VVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENK-ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 80 vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
+|||||+.... .+.+.++..+++|+.|++ .+.++ +.+++ .++||++||.....+... ...
T Consensus 83 LVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f-~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~----------~~~ 151 (247)
T 4hp8_A 83 LVNNAGIIRRADSVEFSELDWDEVMDVNLKALF-FTTQAFAKELLAKGRSGKVVNIASLLSFQGGIR----------VPS 151 (247)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSS----------CHH
T ss_pred EEECCCCCCCCCcccccHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhCCCcEEEEEechhhCCCCCC----------ChH
Confidence 99999986543 244567889999999996 65554 43444 469999999877655443 668
Q ss_pred hHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCch-HHHHHHHHhcCCceeeccCcccCceeHHHHH
Q 022280 151 YGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLP-IQWIDSVLSKGEKVEFFHDECRCPVYVRDVV 222 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 222 (300)
|+.||..+..+.+.++.+ +..+-|+.|--|... ... ..-..+.+... -++..+..++|+|
T Consensus 152 Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~-----~~~~~~~~~~~~~~~-------~PlgR~g~peeiA 219 (247)
T 4hp8_A 152 YTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTE-----ALRADAARNKAILER-------IPAGRWGHSEDIA 219 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH-----HHHTSHHHHHHHHTT-------CTTSSCBCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchh-----hcccCHHHHHHHHhC-------CCCCCCcCHHHHH
Confidence 999999999998877653 345666666432110 000 00011111111 1345678899999
Q ss_pred HHHHHHHhccccccccccceeeecCCC
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.++++|+...... -.++++.+.+|-
T Consensus 220 ~~v~fLaSd~a~~--iTG~~i~VDGG~ 244 (247)
T 4hp8_A 220 GAAVFLSSAAADY--VHGAILNVDGGW 244 (247)
T ss_dssp HHHHHHTSGGGTT--CCSCEEEESTTG
T ss_pred HHHHHHhCchhcC--CcCCeEEECccc
Confidence 9999998653221 113388888763
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-23 Score=172.12 Aligned_cols=209 Identities=13% Similarity=0.117 Sum_probs=143.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhh---ccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSE---IEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~---~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
|.+|++|||||+|+||++++++|++ +| ++|++++|+.+....+.+.+ +..+.++.+|++|+++++.+++
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 80 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPG---SVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLS 80 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTT---CEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCC---CeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHH
Confidence 4578999999999999999999999 89 89999999866555444332 3467788999999998877765
Q ss_pred h------cCCCC--EEEEcccccCc--c-----ccccChhhhhhcccccchHHHHHhhhh----c--cCCeEEEeecccc
Q 022280 73 K------FGQPD--VVVNCAALSVP--R-----VCENDPDSAMSINVPSSLVNWLSSFTE----N--KENLLIHLSTDQV 131 (300)
Q Consensus 73 ~------~~~~d--~vih~a~~~~~--~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~----~--~~~~~v~~SS~~~ 131 (300)
. ++++| +||||||.... . .+.+.++..+++|+.|++ .+++++.. . +.++||++||...
T Consensus 81 ~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~g~iv~isS~~~ 159 (259)
T 1oaa_A 81 AVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSML-CLTSGTLNAFQDSPGLSKTVVNISSLCA 159 (259)
T ss_dssp HHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHH-HHHHHHHHTSCCCTTCEEEEEEECCGGG
T ss_pred HHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCceEEEEcCchh
Confidence 4 34688 99999997532 1 223456788999999996 87777654 2 3458999999888
Q ss_pred ccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcC-Cc--eeec
Q 022280 132 YEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKG-EK--VEFF 208 (300)
Q Consensus 132 ~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~ 208 (300)
+.+.+. ...|+.||.+++.+.+.++.++.-+|...| .|+... . .+........ .. ....
T Consensus 160 ~~~~~~----------~~~Y~asKaa~~~~~~~la~e~~~i~vn~v-~PG~v~---T----~~~~~~~~~~~~~~~~~~~ 221 (259)
T 1oaa_A 160 LQPYKG----------WGLYCAGKAARDMLYQVLAAEEPSVRVLSY-APGPLD---N----DMQQLARETSKDPELRSKL 221 (259)
T ss_dssp TSCCTT----------CHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ECCSBS---S----HHHHHHHHHCSCHHHHHHH
T ss_pred cCCCCC----------ccHHHHHHHHHHHHHHHHHhhCCCceEEEe-cCCCcC---c----chHHHHhhccCChhHHHHH
Confidence 765433 678999999999999887654322443333 232110 0 1111111000 00 0000
Q ss_pred c--CcccCceeHHHHHHHHHHHHhc
Q 022280 209 H--DECRCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 209 ~--~~~~~~i~v~D~a~~~~~~~~~ 231 (300)
. .+...+.+++|+|+++++++..
T Consensus 222 ~~~~p~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 222 QKLKSDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HHHHHTTCSBCHHHHHHHHHHHHHH
T ss_pred HHhhhcCCcCCHHHHHHHHHHHHhh
Confidence 0 1234688999999999999974
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-22 Score=173.82 Aligned_cols=198 Identities=13% Similarity=0.103 Sum_probs=142.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh-------hh---hhcCCCceeEEEeecCCchhHHHHH
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ-------LL---LDALPHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~-------~~---~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (300)
.++++|||||+|+||++++++|+++| ++|++++|+.++.. .. ....+..+.++.+|++|.+++++++
T Consensus 44 ~gk~vlVTGas~GIG~aia~~La~~G---a~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~ 120 (346)
T 3kvo_A 44 AGCTVFITGASRGIGKAIALKAAKDG---ANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAV 120 (346)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCC---CEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 46889999999999999999999999 89999999866421 11 1233567788999999999876665
Q ss_pred H----hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCC
Q 022280 72 L----KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFY 139 (300)
Q Consensus 72 ~----~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~ 139 (300)
+ .++++|+||||||...... ..+.++..+++|+.|++ .+++++ ++.+.++||++||...+.+...
T Consensus 121 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~~-- 197 (346)
T 3kvo_A 121 EKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTY-LASKACIPYLKKSKVAHILNISPPLNLNPVWF-- 197 (346)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHH-HHHHHHHHHHTTCSSCEEEEECCCCCCCGGGT--
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHCCCCEEEEECCHHHcCCCCC--
Confidence 4 4579999999999864322 23345778999999996 777776 4456679999999887654211
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHcCC------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEKCSN------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
.+...|+.||.+++.+.+.++.+ +..+.|+.+... .+.. .+... ....
T Consensus 198 ------~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T------------~~~~-~~~~~-------~~~~ 251 (346)
T 3kvo_A 198 ------KQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT------------AAMD-MLGGP-------GIES 251 (346)
T ss_dssp ------SSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC------------HHHH-HHCC---------CGG
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc------------HHHH-hhccc-------cccc
Confidence 13678999999999988876543 344555532211 1222 22111 1234
Q ss_pred CceeHHHHHHHHHHHHhc
Q 022280 214 CPVYVRDVVKIILALTNR 231 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~ 231 (300)
.+..++|+|+++++++..
T Consensus 252 r~~~pedvA~~v~~L~s~ 269 (346)
T 3kvo_A 252 QCRKVDIIADAAYSIFQK 269 (346)
T ss_dssp GCBCTHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 577899999999999987
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=169.29 Aligned_cols=197 Identities=15% Similarity=0.195 Sum_probs=140.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeec--CCchhHHHHHH--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDL--KSGSGFDAVAL-- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~--~~~~~~~~~~~-- 72 (300)
|.+|++|||||+|+||++++++|+++| ++|++++|+.+....+.+.+ .....++.+|+ ++.+++..+++
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~ 88 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHG---ASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARV 88 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHH
Confidence 356899999999999999999999999 89999999866555443322 24556677777 88877665554
Q ss_pred --hcCCCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCC
Q 022280 73 --KFGQPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 --~~~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
.++++|+||||||..... ...+.++..+++|+.+++ .+++++ ++.+.++||++||...+.+...
T Consensus 89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~---- 163 (247)
T 3i1j_A 89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATF-MLTRALLPLLKRSEDASIAFTSSSVGRKGRAN---- 163 (247)
T ss_dssp HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTSSSEEEEEECCGGGTSCCTT----
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHH-HHHHHHHHHHHhCCCCeEEEEcchhhcCCCCC----
Confidence 457999999999975321 133456788999999996 777776 4556679999999887655433
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcCCc--------eeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCSNF--------AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~~--------~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+.+.+.+.++.++ ..++|+.+.. .+....... ....
T Consensus 164 ------~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t-------------~~~~~~~~~--------~~~~ 216 (247)
T 3i1j_A 164 ------WGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRT-------------GMRAQAYPD--------ENPL 216 (247)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSS-------------HHHHHHSTT--------SCGG
T ss_pred ------cchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccC-------------ccchhcccc--------cCcc
Confidence 6789999999999988765432 3344444422 122221111 1123
Q ss_pred CceeHHHHHHHHHHHHhcc
Q 022280 214 CPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~ 232 (300)
.+..++|+|+++++++...
T Consensus 217 ~~~~p~dva~~~~~l~s~~ 235 (247)
T 3i1j_A 217 NNPAPEDIMPVYLYLMGPD 235 (247)
T ss_dssp GSCCGGGGTHHHHHHHSGG
T ss_pred CCCCHHHHHHHHHHHhCch
Confidence 4678999999999999753
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-22 Score=169.66 Aligned_cols=196 Identities=13% Similarity=0.059 Sum_probs=141.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----CCceeEEEeecCCchhHHHHHH----h
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
.+++||||||+|+||+++++.|+++| ++|++++|+++....+.+.+ ...+.++.+|++|.++++.+++ .
T Consensus 27 ~~k~vlITGasggIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 27 QGKKVIVTGASKGIGREMAYHLAKMG---AHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999 89999999866554443321 2367788999999988766654 3
Q ss_pred cCCCCEEEEc-ccccCccc---cccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNC-AALSVPRV---CENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 74 ~~~~d~vih~-a~~~~~~~---~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++++|+|||| |+...... +.+.++..+++|+.|++ ++++++.. .+.++||++||...+.+.+.
T Consensus 104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 173 (286)
T 1xu9_A 104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYV-VLTVAALPMLKQSNGSIVVVSSLAGKVAYPM--------- 173 (286)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEEEGGGTSCCTT---------
T ss_pred cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHH-HHHHHHHHHHHHCCCEEEEECCcccccCCCC---------
Confidence 5789999999 56543221 22345678999999996 77776654 23469999999887755432
Q ss_pred CCChhHHHHHHHHHHHHHHcC---------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS---------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~---------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+.+.+++.+.. ++++++|+.+..+ +..... . +.....+++
T Consensus 174 -~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~-------------~~~~~~-~-------~~~~~~~~~ 231 (286)
T 1xu9_A 174 -VAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE-------------TAMKAV-S-------GIVHMQAAP 231 (286)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH-------------HHHHHS-C-------GGGGGGCBC
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCCh-------------hHHHhc-c-------ccccCCCCC
Confidence 67899999999988875433 4566777776432 111111 0 111234689
Q ss_pred HHHHHHHHHHHHhcc
Q 022280 218 VRDVVKIILALTNRW 232 (300)
Q Consensus 218 v~D~a~~~~~~~~~~ 232 (300)
++|+|+.++.+++.+
T Consensus 232 ~~~vA~~i~~~~~~~ 246 (286)
T 1xu9_A 232 KEECALEIIKGGALR 246 (286)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999874
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=169.27 Aligned_cols=197 Identities=14% Similarity=0.089 Sum_probs=141.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh-------hhhh---cCCCceeEEEeecCCchhHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ-------LLLD---ALPHSFVFFDVDLKSGSGFDAV 70 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~-------~~~~---~~~~~~~~~~~D~~~~~~~~~~ 70 (300)
|++|++|||||+|+||++++++|+++| ++|++++|+.+... .... ..+..+.++.+|++|.++++.+
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 80 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDG---ANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAA 80 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 467899999999999999999999999 89999999865422 2211 1255678899999999987666
Q ss_pred HH----hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccC--CC
Q 022280 71 AL----KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEG--VK 136 (300)
Q Consensus 71 ~~----~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~--~~ 136 (300)
++ .++++|++|||||...... ..+.++..+++|+.+++ .+.+++. +.+.++||++||...+.+ ..
T Consensus 81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~ 159 (274)
T 3e03_A 81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSF-VCAQACLPHLLQAPNPHILTLAPPPSLNPAWWG 159 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHH-HHHHHHHHHHTTSSSCEEEECCCCCCCCHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHH-HHHHHHHHHHHhcCCceEEEECChHhcCCCCCC
Confidence 54 4579999999999864322 23345678899999996 7766654 456679999999877654 22
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc
Q 022280 137 SFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH 209 (300)
Q Consensus 137 ~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
. ...|+.||.+++.+.+.++. ++..+.|+.+.... +. ... . +
T Consensus 160 ~----------~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~------------~~-~~~-~-------~ 208 (274)
T 3e03_A 160 A----------HTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATD------------AI-NML-P-------G 208 (274)
T ss_dssp H----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC----------------------------C
T ss_pred C----------CchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccc------------hh-hhc-c-------c
Confidence 2 56899999999998887654 44567776432211 01 111 0 1
Q ss_pred CcccCceeHHHHHHHHHHHHhcc
Q 022280 210 DECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
.....+..++|+|+++++++...
T Consensus 209 ~~~~~~~~pedvA~~v~~l~s~~ 231 (274)
T 3e03_A 209 VDAAACRRPEIMADAAHAVLTRE 231 (274)
T ss_dssp CCGGGSBCTHHHHHHHHHHHTSC
T ss_pred ccccccCCHHHHHHHHHHHhCcc
Confidence 12234678999999999999763
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=163.66 Aligned_cols=222 Identities=13% Similarity=-0.001 Sum_probs=150.8
Q ss_pred CCCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCCCchhhhhh---cC-CCceeEEEeecCCchhHHHHH---
Q 022280 1 MSKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD---AL-PHSFVFFDVDLKSGSGFDAVA--- 71 (300)
Q Consensus 1 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~---~~-~~~~~~~~~D~~~~~~~~~~~--- 71 (300)
|.+|++|||||+| +||.++++.|+++| ++|++.+|+.+..+.+.+ +. +..+.++++|++|++++++++
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~G---a~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLG---AKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQI 80 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4679999999876 99999999999999 899999998765544432 32 346778899999999865554
Q ss_pred -HhcCCCCEEEEcccccCccc--------cccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCC
Q 022280 72 -LKFGQPDVVVNCAALSVPRV--------CENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 72 -~~~~~~d~vih~a~~~~~~~--------~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
++++++|++|||||+..... ..+.++..+++|+.+.+ .+...+.. .+.++||++||.....+.+.
T Consensus 81 ~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~-~~~~~~~~~~~~~G~IVnisS~~~~~~~~~--- 156 (256)
T 4fs3_A 81 GKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLT-IVAHEAKKLMPEGGSIVATTYLGGEFAVQN--- 156 (256)
T ss_dssp HHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHTTCTTCEEEEEEECGGGTSCCTT---
T ss_pred HHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCEEEEEeccccccCccc---
Confidence 56789999999999754321 11233456788888875 55555443 23359999999876655433
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+++.+.+.++. ++..+.|+.+--+..... .....+..... .. .++.
T Consensus 157 -------~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~---~~~~~~~~~~~-~~-------~Pl~ 218 (256)
T 4fs3_A 157 -------YNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGV---GGFNTILKEIK-ER-------APLK 218 (256)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC---TTHHHHHHHHH-HH-------STTS
T ss_pred -------chhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhc---cCCHHHHHHHH-hc-------CCCC
Confidence 67899999999998887654 345677776654321110 01122222222 11 1244
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+..++|+|.++++|+...... -.++++.+.+|-
T Consensus 219 R~g~peevA~~v~fL~Sd~a~~--iTG~~i~VDGG~ 252 (256)
T 4fs3_A 219 RNVDQVEVGKTAAYLLSDLSSG--VTGENIHVDSGF 252 (256)
T ss_dssp SCCCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTG
T ss_pred CCcCHHHHHHHHHHHhCchhcC--ccCCEEEECcCH
Confidence 6788999999999999653221 113388888874
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=163.26 Aligned_cols=217 Identities=17% Similarity=0.225 Sum_probs=145.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~~ 77 (300)
++|++|||||+++||+++++.|+++| ++|++.+|+.++. . ....++++|++++++++.++ ++++++
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~~~~------~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 79 (261)
T 4h15_A 10 RGKRALITAGTKGAGAATVSLFLELG---AQVLTTARARPEG------L-PEELFVEADLTTKEGCAIVAEATRQRLGGV 79 (261)
T ss_dssp TTCEEEESCCSSHHHHHHHHHHHHTT---CEEEEEESSCCTT------S-CTTTEEECCTTSHHHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEeccCcHHHHHHHHHHHHcC---CEEEEEECCchhC------C-CcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 8999999975431 1 12235899999999865544 557899
Q ss_pred CEEEEcccccCc------cccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 78 DVVVNCAALSVP------RVCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 78 d~vih~a~~~~~------~~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
|++|||||.... +.+.+.++..+++|+.+++ .+.++ +++++-++||++||.....+.+. .
T Consensus 80 DilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~-~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~---------~ 149 (261)
T 4h15_A 80 DVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAV-RLDRQLVPDMVARGSGVVVHVTSIQRVLPLPE---------S 149 (261)
T ss_dssp SEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT---------T
T ss_pred CEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHH-HHHHhhchhhhhcCCceEEEEEehhhccCCCC---------c
Confidence 999999997532 1234457788999999996 55444 45566779999999776544321 1
Q ss_pred CChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhc-CCce--------eec-cC
Q 022280 148 VNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSK-GEKV--------EFF-HD 210 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~-~~ 210 (300)
...|+.||.+++.+.+.++.+ +..+.||.|--+. ...+.....+. +... ... .-
T Consensus 150 ~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (261)
T 4h15_A 150 TTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEA---------SVRLAERLAKQAGTDLEGGKKIIMDGLGGI 220 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHH---------HHHHHHHHHHHTTCCHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcc---------hhhhhHHHHHhhccchhhHHHHHHHHhcCC
Confidence 568999999999998877653 3446665553221 00111111100 0000 000 11
Q ss_pred cccCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 211 ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 211 ~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+...+..++|+|.++++|+...... -.++++++.+|-
T Consensus 221 PlgR~g~peevA~~v~fLaS~~a~~--itG~~i~VDGG~ 257 (261)
T 4h15_A 221 PLGRPAKPEEVANLIAFLASDRAAS--ITGAEYTIDGGT 257 (261)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTC
T ss_pred CCCCCcCHHHHHHHHHHHhCchhcC--ccCcEEEECCcC
Confidence 3457889999999999999653221 123388888874
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-22 Score=165.18 Aligned_cols=216 Identities=12% Similarity=0.058 Sum_probs=143.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeec-C--CCCCchhhhhhcCCCceeEEEeecCCchhH----HHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-H--HSTPLPQLLLDALPHSFVFFDVDLKSGSGF----DAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~--r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~~~~~ 75 (300)
+|++|||||+|+||+++++.|+++| ++|+++ . |+++....+.+.+ ... |+.|.+++ +.+.+.++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~~~~r~~~~~~~~~~~~-~~~-----~~~~~~~v~~~~~~~~~~~g 71 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDG---YTVVCHDASFADAAERQRFESEN-PGT-----IALAEQKPERLVDATLQHGE 71 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT---CEEEECCGGGGSHHHHHHHHHHS-TTE-----EECCCCCGGGHHHHHGGGSS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEecCCcCCHHHHHHHHHHh-CCC-----cccCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999 899999 6 8866555554443 222 23344443 44445567
Q ss_pred CCCEEEEcccccCc---c----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVP---R----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 76 ~~d~vih~a~~~~~---~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++|+||||||.... . ...+.++..+++|+.+++ .+++++. +.+.++||++||...+.+.+.
T Consensus 72 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------- 143 (244)
T 1zmo_A 72 AIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPI-LLLQSAIAPLRAAGGASVIFITSSVGKKPLAY------- 143 (244)
T ss_dssp CEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEEECCGGGTSCCTT-------
T ss_pred CCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCcEEEEECChhhCCCCCC-------
Confidence 89999999997644 2 123345678999999996 7666654 456679999999888765433
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCch-HHHHHHHHhcCCceeeccCcccCce
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLP-IQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+.+.+.+.++. ++.+++|+.+..+.... ..... .......... ......+.
T Consensus 144 ---~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~~-------~~p~~r~~ 211 (244)
T 1zmo_A 144 ---NPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFP--TSDWENNPELRERVDR-------DVPLGRLG 211 (244)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBC--HHHHHHCHHHHHHHHH-------HCTTCSCB
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccc--cccccchHHHHHHHhc-------CCCCCCCc
Confidence 67899999999998876643 46778988876542100 00000 0111111100 01223578
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.++|+|+++++++...... ..+.++.+.+|.
T Consensus 212 ~pe~vA~~v~~l~s~~~~~--~tG~~i~vdgG~ 242 (244)
T 1zmo_A 212 RPDEMGALITFLASRRAAP--IVGQFFAFTGGY 242 (244)
T ss_dssp CHHHHHHHHHHHHTTTTGG--GTTCEEEESTTC
T ss_pred CHHHHHHHHHHHcCccccC--ccCCEEEeCCCC
Confidence 8999999999999763211 113378887763
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=164.82 Aligned_cols=228 Identities=16% Similarity=0.096 Sum_probs=152.2
Q ss_pred CCCeEEEEcC--CccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhcCCCceeEEEeecCCchhHHHHHH----hc
Q 022280 2 SKKRVLVVGG--TGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KF 74 (300)
Q Consensus 2 ~~~~ilItGa--tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~ 74 (300)
++|++||||| +|+||+++++.|+++| ++|++++|+.+. ...+.+.++..+.++.+|++|+++++.+++ .+
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQG---AQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI 82 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTT---CEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCC---CEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence 3578999999 9999999999999999 899999998654 355555555667789999999998766655 45
Q ss_pred C---CCCEEEEcccccCc---------cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCC
Q 022280 75 G---QPDVVVNCAALSVP---------RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 75 ~---~~d~vih~a~~~~~---------~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
+ ++|+||||||.... ..+.+.++..+++|+.+++ .+++++... ..++||++||...++..
T Consensus 83 g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~~~~~g~iv~iss~~~~~~~----- 156 (269)
T 2h7i_A 83 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYA-SMAKALLPIMNPGGSIVGMDFDPSRAMP----- 156 (269)
T ss_dssp CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHGGGEEEEEEEEEEECCCSSCCT-----
T ss_pred CCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHH-HHHHHHHHhhccCCeEEEEcCccccccC-----
Confidence 6 89999999997641 1123345678899999996 888887652 22599999997653221
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHH---HHHHHhcCCceeeccC
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQW---IDSVLSKGEKVEFFHD 210 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 210 (300)
....|+.||.+++.+.+.++ .++..++|+.+..+.............. ...... .+ ....
T Consensus 157 ------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~ 226 (269)
T 2h7i_A 157 ------AYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEE---GW-DQRA 226 (269)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHH---HH-HHHC
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHH---hh-hccC
Confidence 25689999999999887654 3567788887754310000000000000 000000 00 0001
Q ss_pred ccc-CceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 211 ECR-CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 211 ~~~-~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
... .+..++|+|+++++++..... ...++++++.+|..
T Consensus 227 p~~rr~~~p~dvA~~v~~L~s~~~~--~itG~~i~vdGG~~ 265 (269)
T 2h7i_A 227 PIGWNMKDATPVAKTVCALLSDWLP--ATTGDIIYADGGAH 265 (269)
T ss_dssp TTCCCTTCCHHHHHHHHHHHSSSCT--TCCSEEEEESTTGG
T ss_pred CcccCCCCHHHHHHHHHHHhCchhc--cCcceEEEecCCee
Confidence 223 478899999999999975321 11234888888743
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=175.13 Aligned_cols=218 Identities=15% Similarity=0.150 Sum_probs=151.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc--hhhhhhcCCCceeEEEeecCCchhHHHHHHh----cC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~ 75 (300)
.++++|||||+|+||.++++.|+++| ++|++++|+... ........ ...++.+|++|.++++.+++. ++
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~G---a~Vvl~~r~~~~~~l~~~~~~~--~~~~~~~Dvtd~~~v~~~~~~~~~~~g 286 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDG---ATVVAIDVDGAAEDLKRVADKV--GGTALTLDVTADDAVDKITAHVTEHHG 286 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEECGGGHHHHHHHHHHH--TCEEEECCTTSTTHHHHHHHHHHHHST
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCC---CEEEEEeCCccHHHHHHHHHHc--CCeEEEEecCCHHHHHHHHHHHHHHcC
Confidence 56899999999999999999999999 899998886321 22222222 345789999999987776653 45
Q ss_pred C-CCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhc----cCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 76 Q-PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTEN----KENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 76 ~-~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+ +|+||||||+.... .+.+.++..+++|+.|++ ++.+++... +.++||++||...+.+...
T Consensus 287 ~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~-~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~g--------- 356 (454)
T 3u0b_A 287 GKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQ-RLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRG--------- 356 (454)
T ss_dssp TCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHTTSSCTTCEEEEECCHHHHHCCTT---------
T ss_pred CCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCEEEEEeChHhCCCCCC---------
Confidence 5 99999999987543 233456788999999996 888887764 5679999999887655544
Q ss_pred CCChhHHHHHHHHHHHHHHc-------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC-------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~-------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
...|+.||.+++.+.+.++ .++..+.|+.+..+.... . +. ........ ......+..++
T Consensus 357 -~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-~----~~-~~~~~~~~-------~~~l~r~g~pe 422 (454)
T 3u0b_A 357 -QTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEA-I----PL-ATREVGRR-------LNSLFQGGQPV 422 (454)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------------CHHHHH-------SBTTSSCBCHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhh-c----ch-hhHHHHHh-------hccccCCCCHH
Confidence 6789999998888777654 356778898887553211 0 00 00000100 01234567899
Q ss_pred HHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 220 D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
|+++++.+++...... ..+++++++++..
T Consensus 423 dvA~~v~fL~s~~a~~--itG~~i~vdGG~~ 451 (454)
T 3u0b_A 423 DVAELIAYFASPASNA--VTGNTIRVCGQAM 451 (454)
T ss_dssp HHHHHHHHHHCGGGTT--CCSCEEEESSSBS
T ss_pred HHHHHHHHHhCCccCC--CCCcEEEECCccc
Confidence 9999999999753221 1234899988643
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=175.06 Aligned_cols=200 Identities=14% Similarity=0.071 Sum_probs=146.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCce-eeecCCCCCc---hhhhh---hcCCCceeEEEeecCCchhHHHHHHhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATHHSTPL---PQLLL---DALPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~-v~~~~r~~~~---~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
.++++|||||+|+||.++++.|+++| ++ |++++|+... ...+. ...+..+.++.+|++|++++..+++..
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G---~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i 301 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRG---APHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 301 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHT---CSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC---CCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999 64 8889998532 22222 223567888999999999998888753
Q ss_pred ---CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 75 ---GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 75 ---~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+++|+|||+||..... .+.+.++..+++|+.|+. ++.+++.+.+.++||++||...+.....
T Consensus 302 ~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~-~L~~~~~~~~~~~~V~~SS~a~~~g~~g---------- 370 (486)
T 2fr1_A 302 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGAR-NLHELTRELDLTAFVLFSSFASAFGAPG---------- 370 (486)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHH-HHHHHHTTSCCSEEEEEEEHHHHTCCTT----------
T ss_pred HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHH-HHHHHhCcCCCCEEEEEcChHhcCCCCC----------
Confidence 4679999999976532 123345678899999996 9999998888899999999765544333
Q ss_pred CChhHHHHHHHHHHHHHH---cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 148 VNVYGKSKVAAEKFIYEK---CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~---~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
...|+.+|..++.+.+.. +.++++++|+.+.+++.... .... ........+++++|++++
T Consensus 371 ~~~Yaaaka~l~~la~~~~~~gi~v~~i~pG~~~~~gm~~~--------~~~~---------~~~~~g~~~i~~e~~a~~ 433 (486)
T 2fr1_A 371 LGGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGSGMAEG--------PVAD---------RFRRHGVIEMPPETACRA 433 (486)
T ss_dssp CTTTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC-----------------------------CTTTTEECBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCeEEEEECCeeCCCcccch--------hHHH---------HHHhcCCCCCCHHHHHHH
Confidence 678999999999887654 45789999999876542100 0000 011122357899999999
Q ss_pred HHHHHhcc
Q 022280 225 ILALTNRW 232 (300)
Q Consensus 225 ~~~~~~~~ 232 (300)
+..+++.+
T Consensus 434 l~~~l~~~ 441 (486)
T 2fr1_A 434 LQNALDRA 441 (486)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCC
Confidence 99999874
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=169.08 Aligned_cols=256 Identities=14% Similarity=0.085 Sum_probs=159.4
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC---------CCCchhhhhhcCCCceeEEEeecCCchhHHHH-
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH---------STPLPQLLLDALPHSFVFFDVDLKSGSGFDAV- 70 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r---------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~- 70 (300)
|.+|++|||||+|+||+++++.|+++| ++|++.++ +.+......+.+........+|+++.++++.+
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~G---a~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~ 83 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERG---ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLV 83 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHH
Confidence 356899999999999999999999999 89998654 33333333222211111246899998875554
Q ss_pred ---HHhcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCC
Q 022280 71 ---ALKFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFY 139 (300)
Q Consensus 71 ---~~~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~ 139 (300)
.+.++++|+||||||+.... .+.+.++..+++|+.|++ .+.+++ ++.+.++||++||.....+..
T Consensus 84 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~--- 159 (319)
T 1gz6_A 84 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSF-QVTRAAWDHMKKQNYGRIIMTASASGIYGNF--- 159 (319)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTCEEEEEECCHHHHHCCT---
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCCEEEEECChhhccCCC---
Confidence 44577899999999976532 133456788999999986 766665 445667999999975433322
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
+...|+.||.+.+.+.+.++. ++.+++|+.+ .+... ...+. ..
T Consensus 160 -------~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~----~~~~~------------------~~ 209 (319)
T 1gz6_A 160 -------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTE----TVMPE------------------DL 209 (319)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTG----GGSCH------------------HH
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-ccccc----ccCCh------------------hh
Confidence 267899999999998877643 4577888875 21100 00010 01
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhhccCCCCCccccChHH-------HHHhcCCCc-
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGVQSPADISMDITK-------LVQTLNIDP- 284 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~~~~~~~~~~~~~~k-------~~~~lg~~p- 284 (300)
..+++++|+|.++++++..+.. ..+++|++++|...... +.+.............|.+. ..+..|+..
T Consensus 210 ~~~~~p~dvA~~~~~l~s~~~~---~tG~~~~v~GG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lw~~~~~~~~~~~~ 285 (319)
T 1gz6_A 210 VEALKPEYVAPLVLWLCHESCE---ENGGLFEVGAGWIGKLR-WERTLGAIVRKRNQPMTPEAVRDNWVKICDFSNASKP 285 (319)
T ss_dssp HHHSCGGGTHHHHHHHTSTTCC---CCSCEEEEETTEEEEEE-EEECCCEECCBTTBCCCHHHHHHTHHHHTCCTTCBCC
T ss_pred hccCCHHHHHHHHHHHhCchhh---cCCCEEEECCCeEEEEe-eeeccceeccCCCCCCCHHHHHHHHHHhhccccccCC
Confidence 1246799999999999875321 12348888876432110 11000000001112223333 333447665
Q ss_pred CCHHHHHHHHHhh
Q 022280 285 VTYKDGVKLTLAA 297 (300)
Q Consensus 285 ~~~~~~l~~~~~~ 297 (300)
.++.+.+..+++.
T Consensus 286 ~~~~~~~~~~~~~ 298 (319)
T 1gz6_A 286 KSIQESTGGIIEV 298 (319)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 7888887777653
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=167.41 Aligned_cols=199 Identities=13% Similarity=0.118 Sum_probs=138.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CCCceeEEEeecCCc-hhHHHHHH----
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LPHSFVFFDVDLKSG-SGFDAVAL---- 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~~~~~~~~~D~~~~-~~~~~~~~---- 72 (300)
.+++||||||+|+||++++++|+++| ++|++++|+.++.....+. .+..+.++.+|++|. ++++.+++
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNG---IMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 36789999999999999999999999 8999999986654443332 235688899999998 76655544
Q ss_pred hcCCCCEEEEcccccCcc----------------------------------ccccChhhhhhcccccchHHHHHhhh--
Q 022280 73 KFGQPDVVVNCAALSVPR----------------------------------VCENDPDSAMSINVPSSLVNWLSSFT-- 116 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----------------------------------~~~~~~~~~~~~nv~~~~~~l~~~~~-- 116 (300)
.++++|+||||||+.... ...+.++..+++|+.|++ .+++++.
T Consensus 88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~~~~~~ 166 (311)
T 3o26_A 88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVK-SVTEVLIPL 166 (311)
T ss_dssp HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHH-HHHHHHHHH
T ss_pred hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHH-HHHHHhhHh
Confidence 457899999999986321 122334567999999986 6666654
Q ss_pred --hccCCeEEEeeccccccCCCC---------------------------------CCCCCCCCCCCChhHHHHHHHHHH
Q 022280 117 --ENKENLLIHLSTDQVYEGVKS---------------------------------FYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 117 --~~~~~~~v~~SS~~~~~~~~~---------------------------------~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
+.+.++||++||...+.+... ...+...+.+...|+.||.+.+.+
T Consensus 167 l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~ 246 (311)
T 3o26_A 167 LQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAY 246 (311)
T ss_dssp HTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHH
T ss_pred hccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHH
Confidence 455679999999776543210 111122223456899999999999
Q ss_pred HHHHcCC-----ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 162 IYEKCSN-----FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 162 ~~~~~~~-----~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
.+.++.+ +..+.||.|..+-.. . .....+++.++.++.++..+
T Consensus 247 ~~~la~e~~~i~v~~v~PG~v~T~~~~------------------~----------~~~~~~~~~a~~~~~~~~~~ 294 (311)
T 3o26_A 247 TRVLANKIPKFQVNCVCPGLVKTEMNY------------------G----------IGNYTAEEGAEHVVRIALFP 294 (311)
T ss_dssp HHHHHHHCTTSEEEEECCCSBCSGGGT------------------T----------CCSBCHHHHHHHHHHHHTCC
T ss_pred HHHHHhhcCCceEEEecCCceecCCcC------------------C----------CCCCCHHHHHHHHHHHHhCC
Confidence 9877653 344555555432110 0 01246889999998888764
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-21 Score=166.85 Aligned_cols=165 Identities=19% Similarity=0.215 Sum_probs=125.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh---hhc------CCCceeEEEeecCCchhHHHHHHh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL---LDA------LPHSFVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~---~~~------~~~~~~~~~~D~~~~~~~~~~~~~ 73 (300)
+++||||||+|+||++++++|+++| ++|+++.|+.+..... ... .+..+.++.+|++|.+++..+++.
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G---~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 78 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDP---SQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARER 78 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCT---TCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHH
Confidence 6789999999999999999999999 7787777764433222 111 124677899999999999888875
Q ss_pred c--CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCC
Q 022280 74 F--GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 74 ~--~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
. +++|+||||||...... ..+.++..+++|+.|++ ++++++ ++.+.++||++||...+.+...
T Consensus 79 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~~------ 151 (327)
T 1jtv_A 79 VTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTV-RMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPF------ 151 (327)
T ss_dssp CTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTT------
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCEEEEECCcccccCCCC------
Confidence 3 57999999999754321 23346788999999996 777774 4456789999999887654332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCC
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQ 181 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~ 181 (300)
...|+.||.+++.+.+.++. ++.+++|+.|..+-
T Consensus 152 ----~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 152 ----NDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 56899999999998876543 56789999987654
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-20 Score=167.85 Aligned_cols=199 Identities=15% Similarity=0.108 Sum_probs=146.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCC---chhhhhh---cCCCceeEEEeecCCchhHHHHHHhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTP---LPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~---~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
.++++|||||+|+||.++++.|+++| + +|+++.|+.. ....+.+ ..+..+.++.+|++|.+++..+++.
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G---~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~- 333 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEG---AERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTA- 333 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT---CSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHH-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC---CcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhc-
Confidence 35789999999999999999999999 6 5888888753 2222222 2345678899999999999998886
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc-cCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
+++|+|||+||...... ..+.++..+++|+.|+. ++.+.+... +.++||++||...+..... ..
T Consensus 334 ~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~-~L~~~~~~~~~~~~~V~~SS~a~~~g~~g----------~~ 402 (511)
T 2z5l_A 334 YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAE-LLHQLTADIKGLDAFVLFSSVTGTWGNAG----------QG 402 (511)
T ss_dssp SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHH-HHHHHTSSCTTCCCEEEEEEGGGTTCCTT----------BH
T ss_pred CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHH-HHHHHHhhccCCCEEEEEeCHHhcCCCCC----------CH
Confidence 58999999999865431 22345677899999996 999988776 7789999999765433332 57
Q ss_pred hhHHHHHHHHHHHHHHc---CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHH
Q 022280 150 VYGKSKVAAEKFIYEKC---SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIIL 226 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~---~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 226 (300)
.|+.+|..++.+.+... .++++++|+.+-+.+-. ... ....+. .....+++++|+++++.
T Consensus 403 ~YaaaKa~ld~la~~~~~~gi~v~sv~pG~~~~tgm~----~~~----~~~~~~---------~~g~~~l~~e~~a~~l~ 465 (511)
T 2z5l_A 403 AYAAANAALDALAERRRAAGLPATSVAWGLWGGGGMA----AGA----GEESLS---------RRGLRAMDPDAAVDALL 465 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCEEEEECCBCSTTCC----CCH----HHHHHH---------HHTBCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEECCcccCCccc----ccc----cHHHHH---------hcCCCCCCHHHHHHHHH
Confidence 89999999999887653 47888998877322211 111 111111 11124689999999999
Q ss_pred HHHhcc
Q 022280 227 ALTNRW 232 (300)
Q Consensus 227 ~~~~~~ 232 (300)
.++..+
T Consensus 466 ~al~~~ 471 (511)
T 2z5l_A 466 GAMGRN 471 (511)
T ss_dssp HHHHHT
T ss_pred HHHhCC
Confidence 999874
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=153.98 Aligned_cols=221 Identities=14% Similarity=0.052 Sum_probs=142.9
Q ss_pred CCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCC-----------CCchhhhhhcCCC-----ceeEEEee---
Q 022280 2 SKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHS-----------TPLPQLLLDALPH-----SFVFFDVD--- 60 (300)
Q Consensus 2 ~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~-----------~~~~~~~~~~~~~-----~~~~~~~D--- 60 (300)
++|++|||||+ |+||++++++|+++| ++|++++|+ .+....+ ..+.. ....+.+|
T Consensus 7 ~~k~~lVTGas~~~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 82 (297)
T 1d7o_A 7 RGKRAFIAGIADDNGYGWAVAKSLAAAG---AEILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVYPLDAVF 82 (297)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHHTT---CEEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEEEECTTC
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHCC---CeEEEeeccccchhhhhhhhhhHhhhh-hhhccccccccccccccceec
Confidence 46899999999 999999999999999 899988753 1222222 11111 01223333
Q ss_pred ---------cCC--------chhHHHH----HHhcCCCCEEEEcccccC--c----cccccChhhhhhcccccchHHHHH
Q 022280 61 ---------LKS--------GSGFDAV----ALKFGQPDVVVNCAALSV--P----RVCENDPDSAMSINVPSSLVNWLS 113 (300)
Q Consensus 61 ---------~~~--------~~~~~~~----~~~~~~~d~vih~a~~~~--~----~~~~~~~~~~~~~nv~~~~~~l~~ 113 (300)
++| +++++.+ .+.++++|+||||||... . ..+.+.++..+++|+.|++ .+++
T Consensus 83 ~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~ 161 (297)
T 1d7o_A 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFV-SLLS 161 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH-HHHH
T ss_pred cchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHH-HHHH
Confidence 222 4454444 445678999999998642 1 1233456788999999997 8888
Q ss_pred hhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHH--------cCCceeEeeeeeeCCCC
Q 022280 114 SFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPV-NVYGKSKVAAEKFIYEK--------CSNFAILRSSIIYGPQT 182 (300)
Q Consensus 114 ~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~-~~Y~~sK~~~e~~~~~~--------~~~~~ilR~~~v~G~~~ 182 (300)
++... ..++||++||...+.+.+. . ..|+.||.+++.+.+.+ +.++..++|+.+.++..
T Consensus 162 ~~~~~m~~~g~iv~isS~~~~~~~~~----------~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~ 231 (297)
T 1d7o_A 162 HFLPIMNPGGASISLTYIASERIIPG----------YGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAA 231 (297)
T ss_dssp HHGGGEEEEEEEEEEECGGGTSCCTT----------CTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCS
T ss_pred HHHHHhccCceEEEEeccccccCCCC----------cchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchh
Confidence 87653 1259999999877654322 3 58999999999877643 34667899999988753
Q ss_pred CCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 183 ISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
.. ......+..... .. .....+.+++|+|+++++++...... ..+.++++.+|..
T Consensus 232 ~~---~~~~~~~~~~~~-~~-------~p~~r~~~pedvA~~v~~l~s~~~~~--itG~~i~vdgG~~ 286 (297)
T 1d7o_A 232 KA---IGFIDTMIEYSY-NN-------APIQKTLTADEVGNAAAFLVSPLASA--ITGATIYVDNGLN 286 (297)
T ss_dssp SC---CSHHHHHHHHHH-HH-------SSSCCCBCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTGG
T ss_pred hh---ccccHHHHHHhh-cc-------CCCCCCCCHHHHHHHHHHHhCccccC--CCCCEEEECCCce
Confidence 21 111122222211 11 12235678999999999998753211 1133899988753
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-19 Score=161.51 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=148.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCC---chhhhh---hcCCCceeEEEeecCCchhHHHHHHhc-
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTP---LPQLLL---DALPHSFVFFDVDLKSGSGFDAVALKF- 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~---~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~- 74 (300)
++++|||||+|+||.++++.|+++| + +|+++.|+.. ....+. ...+..+.++.+|++|++++..+++..
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~G---a~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~ 315 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQG---AAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELP 315 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTT---CSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCEEEEECCCCchHHHHHHHHHHCC---CcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 4799999999999999999999999 6 7888888632 223332 233567888999999999999988754
Q ss_pred --CCCCEEEEccccc-Ccc----ccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 75 --GQPDVVVNCAALS-VPR----VCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 75 --~~~d~vih~a~~~-~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+++|+|||+||+. ... .+.+.++..+++|+.|+. ++.+.+...+.++||++||...+.+...
T Consensus 316 ~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~-~L~~~~~~~~~~~iV~~SS~a~~~g~~g---------- 384 (496)
T 3mje_A 316 EDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAAR-HLHELTADLDLDAFVLFSSGAAVWGSGG---------- 384 (496)
T ss_dssp TTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHH-HHHHHHTTSCCSEEEEEEEHHHHTTCTT----------
T ss_pred HhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHH-HHHHHhhccCCCEEEEEeChHhcCCCCC----------
Confidence 4699999999986 321 123345678999999996 9999998888889999999776554443
Q ss_pred CChhHHHHHHHHHHHHHH---cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 148 VNVYGKSKVAAEKFIYEK---CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~---~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
...|+.+|..++.+.++. +.+++++.|+.+.+.+..... ... ..+.... ...+.+++.+++
T Consensus 385 ~~~YaAaKa~ldala~~~~~~Gi~v~sV~pG~w~~~gm~~~~------~~~-~~l~~~g---------~~~l~pe~~~~~ 448 (496)
T 3mje_A 385 QPGYAAANAYLDALAEHRRSLGLTASSVAWGTWGEVGMATDP------EVH-DRLVRQG---------VLAMEPEHALGA 448 (496)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCCEEEEECEESSSCC------------C-HHHHHTT---------EEEECHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCeEEEEECCcccCCccccCh------HHH-HHHHhcC---------CCCCCHHHHHHH
Confidence 678999999999988764 457889999988765432110 001 1111111 124679999999
Q ss_pred HHHHHhccc
Q 022280 225 ILALTNRWL 233 (300)
Q Consensus 225 ~~~~~~~~~ 233 (300)
+..++..+.
T Consensus 449 l~~~l~~~~ 457 (496)
T 3mje_A 449 LDQMLENDD 457 (496)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHcCCC
Confidence 999998743
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-20 Score=171.48 Aligned_cols=209 Identities=13% Similarity=0.096 Sum_probs=135.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC---------CCCchhhhhhcCCCceeEEEeecCCchhHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH---------STPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r---------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (300)
|.+|++|||||+|+||+++++.|+++| ++|++.+| +.+......+.+........+|++|.+++++++
T Consensus 17 l~gk~~lVTGas~GIG~aiA~~La~~G---a~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~ 93 (613)
T 3oml_A 17 YDGRVAVVTGAGAGLGREYALLFAERG---AKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVI 93 (613)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHH
Confidence 457899999999999999999999999 89999987 444444433332111112458999988776665
Q ss_pred H----hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCC
Q 022280 72 L----KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFY 139 (300)
Q Consensus 72 ~----~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~ 139 (300)
+ .++++|+||||||+.... .+.+.++..+++|+.|++ ++.+++ ++.+.++||++||...+.+...
T Consensus 94 ~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~-~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~~-- 170 (613)
T 3oml_A 94 ETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSF-KCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFG-- 170 (613)
T ss_dssp C----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTTCEEEEEECCHHHHHCCTT--
T ss_pred HHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCEEEEECCHHHcCCCCC--
Confidence 4 457899999999986542 234456788999999996 777665 4566679999999776544433
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.||.+++.+.+.++.+ +..+.|+.+- + ..... .....
T Consensus 171 --------~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~-----~~~~~-----------------~~~~~ 219 (613)
T 3oml_A 171 --------QVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-R-----MTEGI-----------------LPDIL 219 (613)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC------------CCC-----------------CCHHH
T ss_pred --------ChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-h-----hhhhc-----------------cchhh
Confidence 678999999999998877543 3445555321 0 00000 00112
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
...+.++|+|.++++++... . ...++++++++|.
T Consensus 220 ~~~~~pedvA~~v~~L~s~~-~--~~tG~~i~vdGG~ 253 (613)
T 3oml_A 220 FNELKPKLIAPVVAYLCHES-C--EDNGSYIESAAGW 253 (613)
T ss_dssp HTTCCGGGTHHHHHHTTSTT-C--CCCSCEEEEETTE
T ss_pred hhcCCHHHHHHHHHHhcCCC-c--CCCceEEEECCCe
Confidence 24567999999999998764 1 1223478887764
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=159.73 Aligned_cols=199 Identities=10% Similarity=0.024 Sum_probs=144.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCce-eeec-CCCC-------------Cchhhhhhc---CCCceeEEEeecCCc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAAT-HHST-------------PLPQLLLDA---LPHSFVFFDVDLKSG 64 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~-v~~~-~r~~-------------~~~~~~~~~---~~~~~~~~~~D~~~~ 64 (300)
++++|||||+|+||.++++.|+++| ++ |+++ +|+. +....+... .+..+.++.+|++|.
T Consensus 251 ~~~vLITGgsgGIG~~lA~~La~~G---~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~ 327 (525)
T 3qp9_A 251 DGTVLVTGAEEPAAAEAARRLARDG---AGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDA 327 (525)
T ss_dssp TSEEEESSTTSHHHHHHHHHHHHHT---CCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcC---CCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCH
Confidence 5789999999999999999999999 66 6666 7874 222333222 256788899999999
Q ss_pred hhHHHHHHh---cCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhcc-----CCeEEEeeccccc
Q 022280 65 SGFDAVALK---FGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTENK-----ENLLIHLSTDQVY 132 (300)
Q Consensus 65 ~~~~~~~~~---~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-----~~~~v~~SS~~~~ 132 (300)
+++..+++. ++++|+||||||+.... .+.+.++..+++|+.|++ ++.+.+.... .++||++||...+
T Consensus 328 ~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~-~L~~~~~~~~~~~~~~~~iV~~SS~a~~ 406 (525)
T 3qp9_A 328 EAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAAL-HLDRLLREAAAAGGRPPVLVLFSSVAAI 406 (525)
T ss_dssp HHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHH-HHHHHHHHTC----CCCEEEEEEEGGGT
T ss_pred HHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHH-HHHHHhccccccCCCCCEEEEECCHHHc
Confidence 999988875 36799999999986542 223345678999999997 8888887654 6799999998876
Q ss_pred cCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC---CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc
Q 022280 133 EGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS---NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH 209 (300)
Q Consensus 133 ~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~---~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
.+..+ ...|+.+|..++.+.+.+.. +++++.|+.+ +.+-.. .. . ....+...
T Consensus 407 ~g~~g----------~~~YaaaKa~l~~lA~~~~~~gi~v~sI~pG~~-~tgm~~---~~---~-~~~~~~~~------- 461 (525)
T 3qp9_A 407 WGGAG----------QGAYAAGTAFLDALAGQHRADGPTVTSVAWSPW-EGSRVT---EG---A-TGERLRRL------- 461 (525)
T ss_dssp TCCTT----------CHHHHHHHHHHHHHHTSCCSSCCEEEEEEECCB-TTSGGG---SS---H-HHHHHHHT-------
T ss_pred CCCCC----------CHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcc-cccccc---ch---h-hHHHHHhc-------
Confidence 55544 67899999999999866543 5677888877 221110 00 0 11111111
Q ss_pred CcccCceeHHHHHHHHHHHHhcc
Q 022280 210 DECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
...++.++++++++..++..+
T Consensus 462 --g~~~l~pee~a~~l~~~l~~~ 482 (525)
T 3qp9_A 462 --GLRPLAPATALTALDTALGHG 482 (525)
T ss_dssp --TBCCBCHHHHHHHHHHHHHHT
T ss_pred --CCCCCCHHHHHHHHHHHHhCC
Confidence 123578999999999999874
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-18 Score=146.28 Aligned_cols=224 Identities=17% Similarity=0.074 Sum_probs=138.1
Q ss_pred CCCeEEEEcC--CccchHHHHHhhhhccCCCceeeecCCCC-----------CchhhhhhcCCCc-----eeEEEe----
Q 022280 2 SKKRVLVVGG--TGYLGQHLLQGLSEIEGKPYDVAATHHST-----------PLPQLLLDALPHS-----FVFFDV---- 59 (300)
Q Consensus 2 ~~~~ilItGa--tG~iG~~l~~~L~~~g~~~~~v~~~~r~~-----------~~~~~~~~~~~~~-----~~~~~~---- 59 (300)
.+|++||||| +|+||+++++.|+++| ++|++++|++ .....+ ..+... ..++.+
T Consensus 8 ~gk~~lVTGa~~s~GIG~aia~~la~~G---~~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~ 83 (315)
T 2o2s_A 8 RGQTAFVAGVADSHGYGWAIAKHLASAG---ARVALGTWPPVLGLFQKSLQSGRLDED-RKLPDGSLIEFAGVYPLDAAF 83 (315)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHTTT---CEEEEEECHHHHHHHHHHHHHTTTHHH-HBCTTSCBCCCSCEEECCTTC
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHCC---CEEEEEecccccchhhhhhhhhhhhhh-hhhhccccccccccccccccc
Confidence 3578999999 8999999999999999 8999988642 111211 111110 233333
Q ss_pred --------ecCC--------chhHHHHH----HhcCCCCEEEEcccccC--c----cccccChhhhhhcccccchHHHHH
Q 022280 60 --------DLKS--------GSGFDAVA----LKFGQPDVVVNCAALSV--P----RVCENDPDSAMSINVPSSLVNWLS 113 (300)
Q Consensus 60 --------D~~~--------~~~~~~~~----~~~~~~d~vih~a~~~~--~----~~~~~~~~~~~~~nv~~~~~~l~~ 113 (300)
|++| +++++.++ +.++++|++|||||... . ..+.+.++..+++|+.|++ .+++
T Consensus 84 ~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~-~l~~ 162 (315)
T 2o2s_A 84 DKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFV-SLLQ 162 (315)
T ss_dssp SSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH-HHHH
T ss_pred cccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHH-HHHH
Confidence 3333 44554444 45678999999999652 1 1223456788999999996 8888
Q ss_pred hhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHc--------CCceeEeeeeeeCCCC
Q 022280 114 SFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPV-NVYGKSKVAAEKFIYEKC--------SNFAILRSSIIYGPQT 182 (300)
Q Consensus 114 ~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~-~~Y~~sK~~~e~~~~~~~--------~~~~ilR~~~v~G~~~ 182 (300)
++... ..++||++||...+.+... . ..|+.||.+++.+.+.++ .++..++|+.|..+..
T Consensus 163 ~~~~~m~~~g~Iv~isS~~~~~~~~~----------~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~ 232 (315)
T 2o2s_A 163 HFGPIMNEGGSAVTLSYLAAERVVPG----------YGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAA 232 (315)
T ss_dssp HHSTTEEEEEEEEEEEEGGGTSCCTT----------CCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHH
T ss_pred HHHHHHhcCCEEEEEecccccccCCC----------ccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhh
Confidence 87652 1259999999877654322 3 479999999998886543 3556688887754310
Q ss_pred C--CC-CCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 183 I--SP-VPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 183 ~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
. .. ........+..... .. .....+..++|+|+++++++...... ..+.++.+.+|..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~-~~-------~p~~r~~~pedvA~~v~~L~s~~~~~--itG~~i~vdGG~~ 293 (315)
T 2o2s_A 233 SAIGKSGEKSFIDYAIDYSY-NN-------APLRRDLHSDDVGGAALFLLSPLARA--VSGVTLYVDNGLH 293 (315)
T ss_dssp HHTTCSSSSCHHHHHHHHHH-HH-------SSSCCCCCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTGG
T ss_pred hhccccccchhHHHHHHHHh-cc-------CCCCCCCCHHHHHHHHHHHhCchhcc--CcCCEEEECCCee
Confidence 0 00 00000011110000 00 12235678999999999999753211 1233888888753
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-20 Score=158.98 Aligned_cols=169 Identities=12% Similarity=0.147 Sum_probs=118.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccC----CCceeeecCCCCC--chhhhhhcC-CCceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEG----KPYDVAATHHSTP--LPQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~----~~~~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
.|+|+||||+||||++++..|+++|+ ...+|++.++.+. ........+ +....++ .|+.+.+++.+.++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~a~~--- 79 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEATDDPKVAFK--- 79 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEEESCHHHHTT---
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccccccc-CCeEeccChHHHhC---
Confidence 47899999999999999999999983 0017888887531 111111111 1112333 67777666666655
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CC-eEEEeeccc-cccCCCCCCC-CCC-CCCCCCh
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-EN-LLIHLSTDQ-VYEGVKSFYK-EED-EIAPVNV 150 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~-~~v~~SS~~-~~~~~~~~~~-E~~-~~~p~~~ 150 (300)
++|+|||+||..... ...+.+.++.|+.++. ++++++++.+ .+ +++++|+.. +.. ++. |.. ...|...
T Consensus 80 ~~D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~-~l~~a~~~~~~~~~~vvv~snp~~~~~----~~~~~~~~~~~p~~~ 152 (327)
T 1y7t_A 80 DADYALLVGAAPRKA--GMERRDLLQVNGKIFT-EQGRALAEVAKKDVKVLVVGNPANTNA----LIAYKNAPGLNPRNF 152 (327)
T ss_dssp TCSEEEECCCCCCCT--TCCHHHHHHHHHHHHH-HHHHHHHHHSCTTCEEEECSSSHHHHH----HHHHHTCTTSCGGGE
T ss_pred CCCEEEECCCcCCCC--CCCHHHHHHHHHHHHH-HHHHHHHhhcCCCeEEEEeCCchhhhH----HHHHHHcCCCChhhe
Confidence 899999999976533 2457788999999996 9999999975 65 788877643 111 111 222 2445678
Q ss_pred hHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCC
Q 022280 151 YGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQT 182 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~ 182 (300)
|+.+|...|++...+ +.+.+++|+++|||++.
T Consensus 153 yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 153 TAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp EECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred eccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 999999999877544 56789999999999875
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-18 Score=146.97 Aligned_cols=164 Identities=12% Similarity=0.071 Sum_probs=113.1
Q ss_pred CCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCC---------Cchh---hhhhc---CCCceeEEEeecCCc
Q 022280 2 SKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHST---------PLPQ---LLLDA---LPHSFVFFDVDLKSG 64 (300)
Q Consensus 2 ~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~---------~~~~---~~~~~---~~~~~~~~~~D~~~~ 64 (300)
++|++|||||++ +||.+++++|+++| ++|++.+|++ +... ..... ....+.++.+|+++.
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G---~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 77 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRN---VKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFD 77 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTT---CEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCS
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCC---CEEEEEecCccccccccchHHHHHHHHHHHhhccccccccccccccccc
Confidence 468999999875 99999999999999 8999665442 1111 11111 112356678888877
Q ss_pred --h------------------hHHHH----HHhcCCCCEEEEcccccC--c----cccccChhhhhhcccccchHHHHHh
Q 022280 65 --S------------------GFDAV----ALKFGQPDVVVNCAALSV--P----RVCENDPDSAMSINVPSSLVNWLSS 114 (300)
Q Consensus 65 --~------------------~~~~~----~~~~~~~d~vih~a~~~~--~----~~~~~~~~~~~~~nv~~~~~~l~~~ 114 (300)
+ ++..+ .+.++++|++|||||+.. . ..+.+.++..+++|+.|++ .+.++
T Consensus 78 ~~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~ 156 (329)
T 3lt0_A 78 TANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLI-SLCKY 156 (329)
T ss_dssp SGGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH-HHHHH
T ss_pred chhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHH-HHHHH
Confidence 5 55444 445688999999999642 1 1223346788999999996 77777
Q ss_pred hhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCCC-hhHHHHHHHHHHHHHHc--------CCceeEeeeeeeC
Q 022280 115 FTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPVN-VYGKSKVAAEKFIYEKC--------SNFAILRSSIIYG 179 (300)
Q Consensus 115 ~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~-~Y~~sK~~~e~~~~~~~--------~~~~ilR~~~v~G 179 (300)
+... .-++||++||...+.+... .. .|+.||.+++.+.+.++ .++..+.||.|.-
T Consensus 157 ~~p~m~~~g~Iv~isS~~~~~~~~~----------~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T 222 (329)
T 3lt0_A 157 FVNIMKPQSSIISLTYHASQKVVPG----------YGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS 222 (329)
T ss_dssp HGGGEEEEEEEEEEECGGGTSCCTT----------CTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred HHHHHhhCCeEEEEeCccccCCCCc----------chHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeec
Confidence 6542 1159999999877655433 43 89999999998876543 3456677777653
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-18 Score=146.42 Aligned_cols=228 Identities=15% Similarity=0.058 Sum_probs=120.5
Q ss_pred CCCeEEEEcC--CccchHHHHHhhhhccCCCceeeecCCCC-----------Cchhh-----------hhhcCCC-----
Q 022280 2 SKKRVLVVGG--TGYLGQHLLQGLSEIEGKPYDVAATHHST-----------PLPQL-----------LLDALPH----- 52 (300)
Q Consensus 2 ~~~~ilItGa--tG~iG~~l~~~L~~~g~~~~~v~~~~r~~-----------~~~~~-----------~~~~~~~----- 52 (300)
.+|++||||| +|+||+++++.|+++| ++|++++|++ +.... ..+.+..
T Consensus 8 ~~k~~lVTGa~~s~GIG~aia~~la~~G---~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (319)
T 2ptg_A 8 RGKTAFVAGVADSNGYGWAICKLLRAAG---ARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDL 84 (319)
T ss_dssp TTCEEEEECCCCTTSHHHHHHHHHHHTT---CEEEEEECHHHHHHHHC--------------------------------
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHCC---CEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccc
Confidence 3578999999 8999999999999999 8999987631 11111 1111100
Q ss_pred -ceeEEEee------------cCC--------chhHHH----HHHhcCCCCEEEEcccccC--c----cccccChhhhhh
Q 022280 53 -SFVFFDVD------------LKS--------GSGFDA----VALKFGQPDVVVNCAALSV--P----RVCENDPDSAMS 101 (300)
Q Consensus 53 -~~~~~~~D------------~~~--------~~~~~~----~~~~~~~~d~vih~a~~~~--~----~~~~~~~~~~~~ 101 (300)
...++.+| ++| .++++. +.+.++++|++|||||... . ....+.++..++
T Consensus 85 ~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~ 164 (319)
T 2ptg_A 85 VFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVS 164 (319)
T ss_dssp CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHH
T ss_pred cccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHh
Confidence 02333333 333 334444 4445678999999999652 1 122334677899
Q ss_pred cccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHH--------cCCce
Q 022280 102 INVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPV-NVYGKSKVAAEKFIYEK--------CSNFA 170 (300)
Q Consensus 102 ~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~-~~Y~~sK~~~e~~~~~~--------~~~~~ 170 (300)
+|+.+++ .+++++... ..++||++||...+.+.+. . ..|+.||.+++.+.+.+ +.++.
T Consensus 165 vN~~g~~-~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~----------~~~~Y~asKaal~~l~~~la~el~~~~gIrvn 233 (319)
T 2ptg_A 165 SSSYSFV-SLLQHFLPLMKEGGSALALSYIASEKVIPG----------YGGGMSSAKAALESDCRTLAFEAGRARAVRVN 233 (319)
T ss_dssp HHTHHHH-HHHHHHGGGEEEEEEEEEEEECC----------------------------THHHHHHHHHHHHHHHCCEEE
T ss_pred HhhHHHH-HHHHHHHHHHhcCceEEEEeccccccccCc----------cchhhHHHHHHHHHHHHHHHHHhccccCeeEE
Confidence 9999997 888887653 1269999999876654322 3 57999999999877643 34567
Q ss_pred eEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 171 ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 171 ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
.++|+.|..+.... ........+..... ..+ ........+..++|+|+++++++..... ...+.++.+.+|..
T Consensus 234 ~v~PG~v~T~~~~~-~~~~~~~~~~~~~~---~~~-~~~~p~~r~~~peevA~~v~~L~s~~~~--~itG~~i~vdGG~~ 306 (319)
T 2ptg_A 234 CISAGPLKSRAASA-IGKAGDKTFIDLAI---DYS-EANAPLQKELESDDVGRAALFLLSPLAR--AVTGATLYVDNGLH 306 (319)
T ss_dssp EEEECCCC------------------------------------CCCHHHHHHHHHHHTSGGGT--TCCSCEEEESTTCT
T ss_pred EEeeCCccChhhhh-cccccchhhHHHHH---HHH-hccCCCCCCCCHHHHHHHHHHHhCcccC--CccCCEEEECCCce
Confidence 78888876542110 00000000000000 000 0001233567899999999999975321 11233888888754
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=154.47 Aligned_cols=208 Identities=15% Similarity=0.142 Sum_probs=138.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-CchhhhhhcCCCceeEEEeec-CCchh-HHHHHHhcCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLDALPHSFVFFDVDL-KSGSG-FDAVALKFGQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~D~-~~~~~-~~~~~~~~~~~d 78 (300)
++|+++||||+++||+++++.|+++| ++|++.+++. +.........+..+..+.+|+ .+.+. ++.+.+.++++|
T Consensus 321 ~gkvalVTGas~GIG~a~A~~la~~G---a~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iD 397 (604)
T 2et6_A 321 KDKVVLITGAGAGLGKEYAKWFAKYG---AKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTID 397 (604)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCeEEEECcchHHHHHHHHHHHHCC---CEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCC
Confidence 46889999999999999999999999 8999887642 111111222244555677888 55443 455667788999
Q ss_pred EEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 79 VVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 79 ~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
++|||||+.... .+.+.++..+++|+.|++ .+.+++ ++.+.++||++||.....+... ...
T Consensus 398 iLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~-~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~~----------~~~ 466 (604)
T 2et6_A 398 ILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTF-NLSRLAWPYFVEKQFGRIINITSTSGIYGNFG----------QAN 466 (604)
T ss_dssp EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEEECCHHHHSCCTT----------BHH
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCCEEEEECChhhccCCCC----------Chh
Confidence 999999986432 233457788999999996 655554 3445569999999776544333 568
Q ss_pred hHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHH
Q 022280 151 YGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 223 (300)
|+.||.++..+.+.++.+ +..+.|+ + .+ .... .... ....+...++|++.
T Consensus 467 Y~asKaal~~lt~~la~El~~~gIrVn~v~PG-~--~T---~m~~----~~~~-------------~~~~~~~~pe~vA~ 523 (604)
T 2et6_A 467 YSSSKAGILGLSKTMAIEGAKNNIKVNIVAPH-A--ET---AMTL----SIMR-------------EQDKNLYHADQVAP 523 (604)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-C--CC---CC--------------------------CCSSCGGGTHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccCeEEEEEcCC-C--CC---cccc----ccCc-------------hhhccCCCHHHHHH
Confidence 999999999988876653 3445554 1 11 1100 0000 01123457999999
Q ss_pred HHHHHHhccccccccccceeeecCCC
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++++++..... ..++++.+++|.
T Consensus 524 ~v~~L~s~~~~---itG~~~~vdGG~ 546 (604)
T 2et6_A 524 LLVYLGTDDVP---VTGETFEIGGGW 546 (604)
T ss_dssp HHHHTTSTTCC---CCSCEEEEETTE
T ss_pred HHHHHhCCccC---CCCcEEEECCCe
Confidence 99998865332 223488888774
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-17 Score=142.71 Aligned_cols=206 Identities=14% Similarity=0.067 Sum_probs=132.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhh-ccCCCceeeecCCCCCchh---------------hhhhcCCCceeEEEeecCCchh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHHSTPLPQ---------------LLLDALPHSFVFFDVDLKSGSG 66 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~-~g~~~~~v~~~~r~~~~~~---------------~~~~~~~~~~~~~~~D~~~~~~ 66 (300)
+|++|||||+++||.++++.|++ +| ++|++++|+.+... ......+..+..+.+|++|+++
T Consensus 61 gKvaLVTGASsGIG~AiA~~LA~~~G---A~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~ 137 (422)
T 3s8m_A 61 PKKVLVIGASSGYGLASRITAAFGFG---ADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAA 137 (422)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHHHC---CEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred CCEEEEECCChHHHHHHHHHHHHhCC---CEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHH
Confidence 68899999999999999999999 99 89999988755432 2223335567778999999997
Q ss_pred HHHHH----Hhc-CCCCEEEEccccc-------------Cc-------------------------cccccChhhhhhcc
Q 022280 67 FDAVA----LKF-GQPDVVVNCAALS-------------VP-------------------------RVCENDPDSAMSIN 103 (300)
Q Consensus 67 ~~~~~----~~~-~~~d~vih~a~~~-------------~~-------------------------~~~~~~~~~~~~~n 103 (300)
+++++ +.+ +++|++|||||.. .. +.+.+.++..+.+|
T Consensus 138 v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn 217 (422)
T 3s8m_A 138 RAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVM 217 (422)
T ss_dssp HHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhh
Confidence 65544 567 8999999999862 00 11223445667777
Q ss_pred cccchHHHHHhhhhc----cCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeE
Q 022280 104 VPSSLVNWLSSFTEN----KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAIL 172 (300)
Q Consensus 104 v~~~~~~l~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~il 172 (300)
..+.+..++.++... +-+++|++||.....+.+. .....|+.||.+++.+.+.++. ++..+
T Consensus 218 ~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p~--------~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVNaV 289 (422)
T 3s8m_A 218 GGQDWELWIDALEGAGVLADGARSVAFSYIGTEITWPI--------YWHGALGKAKVDLDRTAQRLNARLAKHGGGANVA 289 (422)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHHH--------HTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred chhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCCC--------ccchHHHHHHHHHHHHHHHHHHHhCccCEEEEEE
Confidence 766531344443321 2258999999875433221 0126899999999998887654 45667
Q ss_pred eeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 173 R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
.|+.|--+-.. ..| ..+.+..... + .+......+|+++++.+|+...
T Consensus 290 aPG~i~T~~~~-~ip--~~~~~~~~~~---~-------~m~r~G~pEdva~~v~~L~sd~ 336 (422)
T 3s8m_A 290 VLKSVVTQASA-AIP--VMPLYISMVY---K-------IMKEKGLHEGTIEQLDRLFRER 336 (422)
T ss_dssp EECCCCCTTGG-GST--HHHHHHHHHH---H-------HHHHTTCCCCHHHHHHHHHHHT
T ss_pred EcCCCcChhhh-cCC--CChHHHHHHH---h-------hhcCCcChHHHHHHHHHHhcch
Confidence 77766543211 011 0111111111 0 1223445899999999999774
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.6e-17 Score=157.31 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=133.5
Q ss_pred CCCeEEEEcCCcc-chHHHHHhhhhccCCCceeeec-CCCCCchhhhhhcC-------CCceeEEEeecCCchhHHHHHH
Q 022280 2 SKKRVLVVGGTGY-LGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDAL-------PHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 2 ~~~~ilItGatG~-iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
+++++|||||+|+ ||.++++.|+++| ++|+++ .|+.+......+.+ +..+.++.+|++|.++++.+++
T Consensus 475 ~GKvALVTGASgGGIGrAIAr~LA~~G---A~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe 551 (1688)
T 2pff_A 475 KDKYVLITGAGKGSIGAEVLQGLLQGG---AKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIE 551 (1688)
T ss_dssp CSCCEEECSCSSSSTHHHHHHHHHHHT---CEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHHCc---CEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 4678999999998 9999999999999 889988 56655544333322 3457788999999999887775
Q ss_pred h---------cC-CCCEEEEcccccCcc-c----c--ccChhhhhhcccccchHHHHHhhhh------ccCCeEEEeecc
Q 022280 73 K---------FG-QPDVVVNCAALSVPR-V----C--ENDPDSAMSINVPSSLVNWLSSFTE------NKENLLIHLSTD 129 (300)
Q Consensus 73 ~---------~~-~~d~vih~a~~~~~~-~----~--~~~~~~~~~~nv~~~~~~l~~~~~~------~~~~~~v~~SS~ 129 (300)
. ++ ++|+||||||+.... . . .+.++..+++|+.+++ .+++.++. .+.++||++||.
T Consensus 552 ~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~-~Ltqaa~~lp~M~krggGrIVnISSi 630 (1688)
T 2pff_A 552 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMM-GCVKKQKSARGIETRPAQVILPMSPN 630 (1688)
T ss_dssp HHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHH-HHHHHHHHHHTCTTSCEEECCCCCSC
T ss_pred HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHH-HHHHHHHhChHHHhCCCCEEEEEECh
Confidence 3 54 799999999976432 1 1 2345788999999986 77776622 222589999997
Q ss_pred ccccCCCCCCCCCCCCCCCChhHHHHHHHHHHH-HHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcC
Q 022280 130 QVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFI-YEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKG 202 (300)
Q Consensus 130 ~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~-~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 202 (300)
....+ . ...|+.||.+++.++ +..+. ++..+.||.+-|..-... .. ...
T Consensus 631 AG~~G--g----------~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~-~e-----~~~------ 686 (1688)
T 2pff_A 631 HGTFG--G----------DGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSA-NN-----IIA------ 686 (1688)
T ss_dssp TTTSS--C----------BTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCT-TT-----TCS------
T ss_pred HhccC--C----------chHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCC-ch-----HHH------
Confidence 65433 2 568999999999984 43333 223455555543211000 00 000
Q ss_pred CceeeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 203 EKVEFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 203 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
.. .......+..++|+|+++++++...
T Consensus 687 ~~---l~~iplR~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 687 EG---IEKMGVRTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp TT---TSSSSCCCCCCCTTHHHHHHHTSTT
T ss_pred HH---HHhCCCCCCCHHHHHHHHHHHhCCC
Confidence 00 0000113457999999999999764
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=156.66 Aligned_cols=201 Identities=15% Similarity=0.152 Sum_probs=136.8
Q ss_pred CCCCeEEEEcCCcc-chHHHHHhhhhccCCCceeeec-CCCCCchhhhhhc----C---CCceeEEEeecCCchhHHHHH
Q 022280 1 MSKKRVLVVGGTGY-LGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDA----L---PHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 1 ~~~~~ilItGatG~-iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~~----~---~~~~~~~~~D~~~~~~~~~~~ 71 (300)
|+++++|||||+|+ ||.++++.|+++| ++|+++ .|+.+......+. + +..+.++.+|++|.++++.++
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~G---A~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv 749 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGG---AKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI 749 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTT---CEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC---CEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence 35689999999998 9999999999999 899988 5655444332221 1 456778999999999887777
Q ss_pred Hh---------cC-CCCEEEEcccccCcc-c----c--ccChhhhhhcccccchHHHHHhhhh------ccCCeEEEeec
Q 022280 72 LK---------FG-QPDVVVNCAALSVPR-V----C--ENDPDSAMSINVPSSLVNWLSSFTE------NKENLLIHLST 128 (300)
Q Consensus 72 ~~---------~~-~~d~vih~a~~~~~~-~----~--~~~~~~~~~~nv~~~~~~l~~~~~~------~~~~~~v~~SS 128 (300)
+. ++ ++|+||||||+.... . . .+.++..+++|+.+++ .+++.++. .+.++||++||
T Consensus 750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~-~l~~a~~~lp~m~~~~~G~IVnISS 828 (1887)
T 2uv8_A 750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMM-GCVKKQKSARGIETRPAQVILPMSP 828 (1887)
T ss_dssp HHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHH-HHHHHHHHTTTCCSCCEEEEEEECS
T ss_pred HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhCCCCEEEEEcC
Confidence 53 44 799999999986432 1 1 2345788999999986 77776632 22259999999
Q ss_pred cccccCCCCCCCCCCCCCCCChhHHHHHHHHHH-HHHHcC------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhc
Q 022280 129 DQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKF-IYEKCS------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSK 201 (300)
Q Consensus 129 ~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~-~~~~~~------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~ 201 (300)
...+.+ . ...|+.||.+++.+ .+.+.. ++..+.||.+.+..-... .. . ....+..
T Consensus 829 ~ag~~g--g----------~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~-~~-~----~~~~~~~ 890 (1887)
T 2uv8_A 829 NHGTFG--G----------DGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSA-NN-I----IAEGIEK 890 (1887)
T ss_dssp CTTCSS--C----------BTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC------CC-T----THHHHHT
T ss_pred hHhccC--C----------CchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEeccccccccccc-ch-h----HHHHHHh
Confidence 765433 2 56899999999998 554443 345678887764221100 00 0 1111111
Q ss_pred CCceeeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 202 GEKVEFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 202 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
.+ . .+..++|+|.++++++...
T Consensus 891 -~p-------l-r~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 891 -MG-------V-RTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp -TS-------C-CCEEHHHHHHHHHGGGSHH
T ss_pred -cC-------C-CCCCHHHHHHHHHHHhCCC
Confidence 11 1 3458999999999998764
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-16 Score=135.03 Aligned_cols=207 Identities=12% Similarity=0.057 Sum_probs=132.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhh-ccCCCceeeecCCCCCchh---------------hhhhcCCCceeEEEeecCCchh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHHSTPLPQ---------------LLLDALPHSFVFFDVDLKSGSG 66 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~-~g~~~~~v~~~~r~~~~~~---------------~~~~~~~~~~~~~~~D~~~~~~ 66 (300)
+|++|||||+++||.++++.|++ +| ++|++++|+.+... ......+..+..+.+|++|+++
T Consensus 47 gKvaLVTGas~GIG~AiA~~LA~g~G---A~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~ 123 (405)
T 3zu3_A 47 PKRVLVIGASTGYGLAARITAAFGCG---ADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI 123 (405)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHHHC---CEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred CCEEEEeCcchHHHHHHHHHHHHhcC---CEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 68899999999999999999999 99 89998888754321 1223335567778999999997
Q ss_pred HHHHH----HhcCCCCEEEEcccccC--------------------------------------ccccccChhhhhhccc
Q 022280 67 FDAVA----LKFGQPDVVVNCAALSV--------------------------------------PRVCENDPDSAMSINV 104 (300)
Q Consensus 67 ~~~~~----~~~~~~d~vih~a~~~~--------------------------------------~~~~~~~~~~~~~~nv 104 (300)
++.++ +.++++|++||+||... ...+.+.++.++++|.
T Consensus 124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~ 203 (405)
T 3zu3_A 124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG 203 (405)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence 65554 45789999999998741 0112334567788888
Q ss_pred ccchHHHHHhhhh----ccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCCc--------eeE
Q 022280 105 PSSLVNWLSSFTE----NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF--------AIL 172 (300)
Q Consensus 105 ~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~--------~il 172 (300)
.+.+..+++++.. .+-+++|++||.....+.+. .....|+.||..++.+.+.++.++ ..+
T Consensus 204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p~--------~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVNaV 275 (405)
T 3zu3_A 204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHDI--------YWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARVS 275 (405)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTTT--------TTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCCC--------ccchHHHHHHHHHHHHHHHHHHHhCcccCeEEEEE
Confidence 8764234444322 12258999999776543322 012789999999999888765432 334
Q ss_pred eeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccc
Q 022280 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 173 R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 233 (300)
-|+.+--+-. ...|. .+.+..... ..+..+-..+|+++++.+|+....
T Consensus 276 aPG~i~T~~s-~~ip~--~p~y~~~l~----------~~mkr~G~~Ed~a~~i~~L~sd~l 323 (405)
T 3zu3_A 276 VLKAVVSQAS-SAIPM--MPLYLSLLF----------KVMKEKGTHEGCIEQVYSLYKDSL 323 (405)
T ss_dssp ECCCCCCHHH-HTSTT--HHHHHHHHH----------HHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred EeCCCcCchh-hcCCC--CcHHHHHHH----------HHHhcCCCcHHHHHHHHHHHhccc
Confidence 4444332110 00110 111111111 013345568999999999998733
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=153.39 Aligned_cols=201 Identities=17% Similarity=0.136 Sum_probs=133.8
Q ss_pred CCCCeEEEEcCCcc-chHHHHHhhhhccCCCceeeecC-CCCCchhh----hhhcC---CCceeEEEeecCCchhHHHHH
Q 022280 1 MSKKRVLVVGGTGY-LGQHLLQGLSEIEGKPYDVAATH-HSTPLPQL----LLDAL---PHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 1 ~~~~~ilItGatG~-iG~~l~~~L~~~g~~~~~v~~~~-r~~~~~~~----~~~~~---~~~~~~~~~D~~~~~~~~~~~ 71 (300)
|.++++|||||+|+ ||.++++.|+++| ++|++++ |+.+.... +...+ +..+.++.+|++|.+++..++
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~G---A~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv 726 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGG---AKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALV 726 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTT---CEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC---CEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence 34689999999999 9999999999999 8999885 54433322 21222 456778999999999988777
Q ss_pred Hh-------cC-CCCEEEEcccccCcc-c----c--ccChhhhhhcccccchHHHHHhhh------hccCCeEEEeeccc
Q 022280 72 LK-------FG-QPDVVVNCAALSVPR-V----C--ENDPDSAMSINVPSSLVNWLSSFT------ENKENLLIHLSTDQ 130 (300)
Q Consensus 72 ~~-------~~-~~d~vih~a~~~~~~-~----~--~~~~~~~~~~nv~~~~~~l~~~~~------~~~~~~~v~~SS~~ 130 (300)
+. ++ ++|+||||||+.... . . .+.++..+++|+.|++ .+++.++ +.+.++||++||..
T Consensus 727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~-~l~~a~~~lp~M~~~~~G~IVnISS~a 805 (1878)
T 2uv9_A 727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLL-GAIKTQKKERGYETRPAQVILPLSPNH 805 (1878)
T ss_dssp HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHH-HHHHHHHHHHTCCSCCEEECCEECSCS
T ss_pred HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHhCCCCEEEEEcchh
Confidence 63 55 799999999976432 1 1 2345788999999986 6665522 22335899999976
Q ss_pred cccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHc-----C--CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC
Q 022280 131 VYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKC-----S--NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE 203 (300)
Q Consensus 131 ~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~-----~--~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 203 (300)
.+.+ . ...|+.||.+++.+.+.+. . ++..+.||.+-|.. ... ........+.. .
T Consensus 806 g~~g--g----------~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~----m~~--~~~~~~~~~~~-~ 866 (1878)
T 2uv9_A 806 GTFG--N----------DGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTG----LMS--ANNLVAEGVEK-L 866 (1878)
T ss_dssp SSSS--C----------CSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTT----SCS--HHHHTHHHHHT-T
T ss_pred hccC--C----------chHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCc----ccc--cchhhHHHHHh-c
Confidence 5433 1 4579999999999876432 1 33456666654211 000 01111111211 1
Q ss_pred ceeeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 204 KVEFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 204 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
+. .+..++|+|+++++++...
T Consensus 867 -------pl-r~~sPeEVA~avlfLaSd~ 887 (1878)
T 2uv9_A 867 -------GV-RTFSQQEMAFNLLGLMAPA 887 (1878)
T ss_dssp -------TC-CCBCHHHHHHHHHHHHSHH
T ss_pred -------CC-CCCCHHHHHHHHHHHhCCc
Confidence 11 3458999999999998653
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=147.52 Aligned_cols=150 Identities=16% Similarity=0.215 Sum_probs=108.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC---------CchhhhhhcC---CCceeEEEeecCCchh---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST---------PLPQLLLDAL---PHSFVFFDVDLKSGSG--- 66 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~---------~~~~~~~~~~---~~~~~~~~~D~~~~~~--- 66 (300)
.+|+++||||+++||+++++.|+++| ++|++.+|+. +..+...+++ +.. ..+|++|.++
T Consensus 7 ~gkvalVTGas~GIG~a~A~~la~~G---a~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~---~~~d~~d~~~~~~ 80 (604)
T 2et6_A 7 KDKVVIITGAGGGLGKYYSLEFAKLG---AKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGV---AVADYNNVLDGDK 80 (604)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECC-----------CHHHHHHHHHHHTTCE---EEEECCCTTCHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcC---CEEEEEeCCccccccccchHHHHHHHHHHHhcCCe---EEEEcCCHHHHHH
Confidence 46889999999999999999999999 8999988754 3333332222 222 3467777654
Q ss_pred -HHHHHHhcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCC
Q 022280 67 -FDAVALKFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKS 137 (300)
Q Consensus 67 -~~~~~~~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~ 137 (300)
++.+.+.++++|++|||||+.... .+.+.++..+++|+.|++ .+.++ +++.+.++||++||.....+...
T Consensus 81 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~-~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~~ 159 (604)
T 2et6_A 81 IVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAF-AVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFG 159 (604)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcCCCEEEEECCHHHcCCCCC
Confidence 344556788999999999986432 234457789999999996 55544 44455679999999776544333
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHcCC
Q 022280 138 FYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN 168 (300)
Q Consensus 138 ~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~ 168 (300)
...|+.||.++..+.+.++.+
T Consensus 160 ----------~~~Y~asKaal~~lt~~la~E 180 (604)
T 2et6_A 160 ----------QANYASAKSALLGFAETLAKE 180 (604)
T ss_dssp ----------BHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------chHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999877653
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=134.89 Aligned_cols=212 Identities=13% Similarity=0.048 Sum_probs=131.5
Q ss_pred CCCeEEEEcCCccchHH--HHHhhhhccCCCceeeecCCCCCch------------hh---hhhcCCCceeEEEeecCCc
Q 022280 2 SKKRVLVVGGTGYLGQH--LLQGLSEIEGKPYDVAATHHSTPLP------------QL---LLDALPHSFVFFDVDLKSG 64 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~--l~~~L~~~g~~~~~v~~~~r~~~~~------------~~---~~~~~~~~~~~~~~D~~~~ 64 (300)
.+|++|||||+++||.+ +++.|+++| ++|++++|+.... .. .....+..+..+.+|++|.
T Consensus 59 ~gK~aLVTGassGIG~A~aia~ala~~G---a~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~ 135 (418)
T 4eue_A 59 GPKKVLIVGASSGFGLATRISVAFGGPE---AHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSN 135 (418)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHSSSC---CEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHhCC---CEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCH
Confidence 46899999999999999 999999999 8999988874431 11 2233355677889999999
Q ss_pred hhHHHHHH----hcCCCCEEEEcccccC-------------c-------------------------cccccChhhhhhc
Q 022280 65 SGFDAVAL----KFGQPDVVVNCAALSV-------------P-------------------------RVCENDPDSAMSI 102 (300)
Q Consensus 65 ~~~~~~~~----~~~~~d~vih~a~~~~-------------~-------------------------~~~~~~~~~~~~~ 102 (300)
++++.+++ .++++|++|||||... . ....+.++..+.+
T Consensus 136 ~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~v 215 (418)
T 4eue_A 136 ETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKV 215 (418)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 88666554 4688999999999740 0 0122234456677
Q ss_pred ccccchHHHHHhhhhc----cCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCC--------ce
Q 022280 103 NVPSSLVNWLSSFTEN----KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN--------FA 170 (300)
Q Consensus 103 nv~~~~~~l~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~--------~~ 170 (300)
|..+.+..++.++... +-+++|++||.....+.+. .....|+.||.+++.+.+.++.+ +.
T Consensus 216 n~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~p~--------~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN 287 (418)
T 4eue_A 216 MGGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTYKI--------YREGTIGIAKKDLEDKAKLINEKLNRVIGGRAF 287 (418)
T ss_dssp HSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGTTT--------TTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred hhHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCCCc--------cccHHHHHHHHHHHHHHHHHHHHhCCccCeEEE
Confidence 7665532334443322 2248999999765433322 11278999999999988766543 34
Q ss_pred eEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccc
Q 022280 171 ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDK 237 (300)
Q Consensus 171 ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 237 (300)
++.|+.|--+-. ...+. .+.+...... .+...-..+|+++++.+++......+.
T Consensus 288 ~V~PG~v~T~~s-~~ip~--~p~y~~~~~~----------~mk~~G~~E~v~e~~~~L~sd~~~~g~ 341 (418)
T 4eue_A 288 VSVNKALVTKAS-AYIPT--FPLYAAILYK----------VMKEKNIHENCIMQIERMFSEKIYSNE 341 (418)
T ss_dssp EEECCCCCCHHH-HTSTT--HHHHHHHHHH----------HHHHTTCCCCHHHHHHHHHHHTTSSSS
T ss_pred EEECCcCcChhh-hcCCC--CcHHHHHHHH----------HHhhcCChHHHHHHHHHHhhccccCCC
Confidence 455554432210 00110 1111111110 111223478999999999987555443
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=142.83 Aligned_cols=200 Identities=15% Similarity=0.085 Sum_probs=142.8
Q ss_pred CCeEEEEcCCccchHHHHHhhh-hccCCCc-eeeecCCC---CCchhhhhhc---CCCceeEEEeecCCchhHHHHHHhc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLS-EIEGKPY-DVAATHHS---TPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~-~~g~~~~-~v~~~~r~---~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
++++|||||+|.||+++++.|+ ++| . +|+++.|+ .+...++.++ .+..+.++.+|++|.++++++++..
T Consensus 530 ~~~~lItGg~~GlG~aiA~~la~~~G---a~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~ 606 (795)
T 3slk_A 530 AGTVLVTGGTGALGAEVARHLVIERG---VRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASI 606 (795)
T ss_dssp TSEEEEETTTSHHHHHHHHHHHHTSS---CCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred ccceeeccCCCCcHHHHHHHHHHHcC---CcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 5789999999999999999999 799 6 58888998 3333333332 3567888999999999999888753
Q ss_pred ---CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 75 ---GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 75 ---~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
.++|+||||||+.... .+.+.++..+++|+.|++ ++.+++.. .. +||++||...+-+..+
T Consensus 607 ~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~-~l~~~~~~-~l-~iV~~SS~ag~~g~~g---------- 673 (795)
T 3slk_A 607 PDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGAR-NLLELIDP-DV-ALVLFSSVSGVLGSGG---------- 673 (795)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHH-HHHHHSCT-TS-EEEEEEETHHHHTCSS----------
T ss_pred HHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHH-HHHHHHhh-CC-EEEEEccHHhcCCCCC----------
Confidence 2689999999986532 233456788999999996 99888743 34 8999999887655544
Q ss_pred CChhHHHHHHHHHHHHHHc---CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKC---SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~---~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
...|+.+|...+.+.++.. .+...+-||.+-.++-.. ....-....+.+ .....+..++..+.
T Consensus 674 ~~~YaAaka~~~alA~~~~~~Gi~v~sI~pG~v~t~g~~~-----~~~~~~~~~~~~---------~g~~~l~~~e~~~~ 739 (795)
T 3slk_A 674 QGNYAAANSFLDALAQQRQSRGLPTRSLAWGPWAEHGMAS-----TLREAEQDRLAR---------SGLLPISTEEGLSQ 739 (795)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSCCCHHH-----HHHHHHHHHHHH---------TTBCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCeEEEEECCeECcchhhc-----cccHHHHHHHHh---------cCCCCCCHHHHHHH
Confidence 6789999999998887653 467777777765332100 000001111111 11235778999999
Q ss_pred HHHHHhcc
Q 022280 225 ILALTNRW 232 (300)
Q Consensus 225 ~~~~~~~~ 232 (300)
+..++..+
T Consensus 740 ~~~~l~~~ 747 (795)
T 3slk_A 740 FDAACGGA 747 (795)
T ss_dssp HHHHHTSS
T ss_pred HHHHHhCC
Confidence 98888774
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-13 Score=141.59 Aligned_cols=161 Identities=16% Similarity=0.073 Sum_probs=112.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCce-eeecCCCCCchh---hhhh---cCCCceeEEEeecCCchhHHHHHHh--
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATHHSTPLPQ---LLLD---ALPHSFVFFDVDLKSGSGFDAVALK-- 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~-v~~~~r~~~~~~---~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~-- 73 (300)
++++|||||+|+||.++++.|+++| ++ |+++.|+..... ...+ ..+..+.++.+|++|.++++.+++.
T Consensus 1884 ~k~~lITGgs~GIG~aia~~la~~G---a~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A 1884 HKSYVITGGLGGFGLQLAQWLRLRG---AQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTT---CCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCC---CCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999 65 788888865432 2222 2245677789999999987776653
Q ss_pred -cCCCCEEEEcccccCc----cccccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 74 -FGQPDVVVNCAALSVP----RVCENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 74 -~~~~d~vih~a~~~~~----~~~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++++|+|||+||.... ..+.+.++..+++|+.|++ ++.+++... ..++||++||.....+...
T Consensus 1961 ~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~-~l~~~~~~~~~~~g~iV~iSS~ag~~g~~g--------- 2030 (2512)
T 2vz8_A 1961 QLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTA-NLDRVTREACPELDYFVIFSSVSCGRGNAG--------- 2030 (2512)
T ss_dssp HHSCEEEEEECCCC----------------CTTTTHHHHH-HHHHHHHHHCTTCCEEEEECCHHHHTTCTT---------
T ss_pred hcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCEEEEecchhhcCCCCC---------
Confidence 5789999999997542 2244567888999999996 876666542 3369999999776544433
Q ss_pred CCChhHHHHHHHHHHHHHH---cCCceeEeeeee
Q 022280 147 PVNVYGKSKVAAEKFIYEK---CSNFAILRSSII 177 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~---~~~~~ilR~~~v 177 (300)
...|+.+|.+++.+.+.. +.+...+..+.+
T Consensus 2031 -~~~Y~aaKaal~~l~~~rr~~Gl~~~a~~~g~~ 2063 (2512)
T 2vz8_A 2031 -QANYGFANSAMERICEKRRHDGLPGLAVQWGAI 2063 (2512)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCB
T ss_pred -cHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCc
Confidence 678999999999999843 334444444443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.3e-13 Score=139.61 Aligned_cols=202 Identities=13% Similarity=0.076 Sum_probs=126.1
Q ss_pred CCCCeEEEEcCCcc-chHHHHHhhhhccCCCceeeecCCCCCc-----hhhhhhcC---CCceeEEEeecCCchhHHHHH
Q 022280 1 MSKKRVLVVGGTGY-LGQHLLQGLSEIEGKPYDVAATHHSTPL-----PQLLLDAL---PHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 1 ~~~~~ilItGatG~-iG~~l~~~L~~~g~~~~~v~~~~r~~~~-----~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~ 71 (300)
|.+|++|||||+++ ||.++++.|+++| .+|++++|+.+. ...+.+.+ +..+..+.+|++|.++++.++
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~G---A~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv 2210 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGG---ATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLV 2210 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTT---CEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCC---CEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHH
Confidence 46789999999999 9999999999999 899999998765 34443332 345667899999999877765
Q ss_pred H--------hcCCCCEEEEcccc----cCc-----cccccChhhh----hhcccccchHHHHHhhh----hccCC---eE
Q 022280 72 L--------KFGQPDVVVNCAAL----SVP-----RVCENDPDSA----MSINVPSSLVNWLSSFT----ENKEN---LL 123 (300)
Q Consensus 72 ~--------~~~~~d~vih~a~~----~~~-----~~~~~~~~~~----~~~nv~~~~~~l~~~~~----~~~~~---~~ 123 (300)
+ .++++|++|||||. ... ....+.++.. +++|+.+++ .++..+. ..+.. .+
T Consensus 2211 ~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~-~l~~~~~~~m~~~~~g~~~~i 2289 (3089)
T 3zen_D 2211 EWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQ-RLISGLSKIGAERDIASRLHV 2289 (3089)
T ss_dssp HHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCceeEE
Confidence 4 56789999999997 211 1122334433 788888875 5554443 23321 22
Q ss_pred EEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCC--c------eeEeeeeeeCCCCCCCCCCCchHHHH
Q 022280 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN--F------AILRSSIIYGPQTISPVPKSLPIQWI 195 (300)
Q Consensus 124 v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~--~------~ilR~~~v~G~~~~~~~~~~~~~~~~ 195 (300)
+..+|. ..+.... ...|+.||.+++.+.+.++.+ + +.+.||.+-+...... ... .
T Consensus 2290 i~~~ss-~~g~~g~----------~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~-~~~-----~ 2352 (3089)
T 3zen_D 2290 VLPGSP-NRGMFGG----------DGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQ-NDA-----I 2352 (3089)
T ss_dssp EEEECS-STTSCSS----------CSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTT-TTT-----T
T ss_pred EEECCc-ccccCCC----------chHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCccccc-chh-----H
Confidence 222221 1111111 347999999999999887766 2 3344555543221110 000 1
Q ss_pred HHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhcc
Q 022280 196 DSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
...... ... ....++|+|.++++++...
T Consensus 2353 ~~~~~~--------~~~-r~~~PeEIA~avlfLaS~~ 2380 (3089)
T 3zen_D 2353 VSAVEE--------AGV-TTYTTDEMAAMLLDLCTVE 2380 (3089)
T ss_dssp HHHHGG--------GSC-BCEEHHHHHHHHHHTTSHH
T ss_pred HHHHHh--------cCC-CCCCHHHHHHHHHHHhChh
Confidence 111111 011 2238999999999998753
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.7e-12 Score=91.72 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++|+|+|+|+ |++|+++++.|++.|. ++|++.+|++++...+. ...+.++.+|+++.+++.+.++ ++|+||
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~--~~v~~~~r~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~---~~d~vi 74 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSN--YSVTVADHDLAALAVLN---RMGVATKQVDAKDEAGLAKALG---GFDAVI 74 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSS--EEEEEEESCHHHHHHHH---TTTCEEEECCTTCHHHHHHHTT---TCSEEE
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHH---hCCCcEEEecCCCHHHHHHHHc---CCCEEE
Confidence 4679999999 9999999999999984 68999999866555443 2456678899999877777665 899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEe
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHL 126 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~ 126 (300)
|+++... . ..+++++.+.+++.+...
T Consensus 75 ~~~~~~~------------------~-~~~~~~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 75 SAAPFFL------------------T-PIIAKAAKAAGAHYFDLT 100 (118)
T ss_dssp ECSCGGG------------------H-HHHHHHHHHTTCEEECCC
T ss_pred ECCCchh------------------h-HHHHHHHHHhCCCEEEec
Confidence 9985310 1 378888888888554433
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8e-12 Score=106.17 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC--CceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
.+++++||||+|++|+++++.|+++| ++|+++.|+.++...+.+.+. ..+.++.+|+++.+++.+.++ .+|+
T Consensus 118 ~gk~vlVtGaaGGiG~aia~~L~~~G---~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~Dv 191 (287)
T 1lu9_A 118 KGKKAVVLAGTGPVGMRSAALLAGEG---AEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK---GAHF 191 (287)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT---TCSE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHH---hCCE
Confidence 56899999999999999999999999 889999998665555443321 134567899999887777666 7899
Q ss_pred EEEcccccCcc-----ccc-cChhhhhhcccccc
Q 022280 80 VVNCAALSVPR-----VCE-NDPDSAMSINVPSS 107 (300)
Q Consensus 80 vih~a~~~~~~-----~~~-~~~~~~~~~nv~~~ 107 (300)
|||+++..... ... ......+++|+.++
T Consensus 192 lVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~ 225 (287)
T 1lu9_A 192 VFTAGAIGLELLPQAAWQNESSIEIVADYNAQPP 225 (287)
T ss_dssp EEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSS
T ss_pred EEECCCccccCCChhHcCchHHHHHHHHhhhhhh
Confidence 99999753211 111 23334667777765
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-10 Score=100.19 Aligned_cols=168 Identities=11% Similarity=0.078 Sum_probs=101.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCC----CceeeecCCC----CCchhhhhhcCCCc-eeEEEeecCCchhHHHHHHh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGK----PYDVAATHHS----TPLPQLLLDALPHS-FVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~----~~~v~~~~r~----~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~ 73 (300)
.|||+||||+||+|++++..|+.+|.- +.+|++.++. .++.......+.+. ..+ ..|+...+++.+.++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~- 82 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFK- 82 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTT-
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhC-
Confidence 479999999999999999999998830 0278888776 22222111111111 111 245555455555555
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CC-eEEEeeccc-c--ccCCCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-EN-LLIHLSTDQ-V--YEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~-~~v~~SS~~-~--~~~~~~~~~E~~~~~p~ 148 (300)
+.|+|||+||..... .....+.+..|+.++. ++++++.+.+ .+ +||++|... + |-..+ ..+.-| +.
T Consensus 83 --~aD~Vi~~ag~~~~~--g~~r~dl~~~N~~i~~-~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~--~~~~~p--~~ 153 (329)
T 1b8p_A 83 --DADVALLVGARPRGP--GMERKDLLEANAQIFT-VQGKAIDAVASRNIKVLVVGNPANTNAYIAMK--SAPSLP--AK 153 (329)
T ss_dssp --TCSEEEECCCCCCCT--TCCHHHHHHHHHHHHH-HHHHHHHHHSCTTCEEEECSSSHHHHHHHHHH--TCTTSC--GG
T ss_pred --CCCEEEEeCCCCCCC--CCCHHHHHHHHHHHHH-HHHHHHHHhcCCCeEEEEccCchHHHHHHHHH--HcCCCC--HH
Confidence 899999999965432 2245677899999985 9999999974 65 888888632 1 10000 010111 12
Q ss_pred ChhHHHHHHHHHHHH----HHcCCceeEeeeeeeCCC
Q 022280 149 NVYGKSKVAAEKFIY----EKCSNFAILRSSIIYGPQ 181 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~----~~~~~~~ilR~~~v~G~~ 181 (300)
..++.+++...++.. .++.+...++...|+|.+
T Consensus 154 ~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H 190 (329)
T 1b8p_A 154 NFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNH 190 (329)
T ss_dssp GEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCS
T ss_pred HEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEecc
Confidence 346666665544333 345555566766678854
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-09 Score=93.18 Aligned_cols=82 Identities=18% Similarity=-0.029 Sum_probs=62.7
Q ss_pred CCeEEEEcCCccchHHHHHhhh-hccCCCceeeecCCCCCchh---------------hhhhcCCCceeEEEeecCCchh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLS-EIEGKPYDVAATHHSTPLPQ---------------LLLDALPHSFVFFDVDLKSGSG 66 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~-~~g~~~~~v~~~~r~~~~~~---------------~~~~~~~~~~~~~~~D~~~~~~ 66 (300)
.|++|||||+++||.+.+..|+ ..| ..++++.+..+... +..+..+.....+.+|++++++
T Consensus 50 pK~vLVtGaSsGiGlA~AialAf~~G---A~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 50 PKNVLVLGCSNGYGLASRITAAFGYG---AATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI 126 (401)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHHC---CEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHhhCC---CCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence 5899999999999999999998 678 77887777643221 1222335567779999999997
Q ss_pred HHHHH----HhcCCCCEEEEccccc
Q 022280 67 FDAVA----LKFGQPDVVVNCAALS 87 (300)
Q Consensus 67 ~~~~~----~~~~~~d~vih~a~~~ 87 (300)
.++++ +.++++|++||+++..
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccc
Confidence 66555 4578999999999965
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=97.58 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=65.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc--eeeecCCCCCchhhhhhcCC----CceeEEEeecCCchhHHHHHHhcCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY--DVAATHHSTPLPQLLLDALP----HSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~--~v~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|++|+|+|| |+||+.+++.|++.|. . +|++.+|+.++...+.+.++ ..+..+.+|++|.+++.++++.. +
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~--~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~-~ 76 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNRE--VFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV-K 76 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTT--TCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-C
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--CceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-C
Confidence 579999998 9999999999999883 3 78999998777666655442 25777899999999999998865 6
Q ss_pred CCEEEEcccc
Q 022280 77 PDVVVNCAAL 86 (300)
Q Consensus 77 ~d~vih~a~~ 86 (300)
+|+|||+++.
T Consensus 77 ~DvVin~ag~ 86 (405)
T 4ina_A 77 PQIVLNIALP 86 (405)
T ss_dssp CSEEEECSCG
T ss_pred CCEEEECCCc
Confidence 9999999874
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-09 Score=91.14 Aligned_cols=117 Identities=12% Similarity=0.029 Sum_probs=77.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch--hhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP--QLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
++|||+||||+|++|+.++..|+++|.- .+|++.+++++.. ..+.+.. .... +.+ +.+.+++.+.++ +.|+
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~-~ev~l~Di~~~~~~~~dL~~~~-~~~~-v~~-~~~t~d~~~al~---gaDv 79 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLV-SVLHLYDVVNAPGVTADISHMD-TGAV-VRG-FLGQQQLEAALT---GMDL 79 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTE-EEEEEEESSSHHHHHHHHHTSC-SSCE-EEE-EESHHHHHHHHT---TCSE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCC-CEEEEEeCCCcHhHHHHhhccc-ccce-EEE-EeCCCCHHHHcC---CCCE
Confidence 3579999999999999999999988732 4688877664411 1122111 1111 222 222334555555 9999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
|||+|+...... ......+..|+.++. ++++++.+.+++.+|+++|
T Consensus 80 Vi~~ag~~~~~g--~~r~dl~~~N~~~~~-~i~~~i~~~~p~~~viv~S 125 (326)
T 1smk_A 80 IIVPAGVPRKPG--MTRDDLFKINAGIVK-TLCEGIAKCCPRAIVNLIS 125 (326)
T ss_dssp EEECCCCCCCSS--CCCSHHHHHHHHHHH-HHHHHHHHHCTTSEEEECC
T ss_pred EEEcCCcCCCCC--CCHHHHHHHHHHHHH-HHHHHHHhhCCCeEEEEEC
Confidence 999999653221 133566889999985 9999999988877777776
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.7e-10 Score=96.27 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=74.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCC--CCCchhh----hhhcCCCceeEEEeecCCch-hHHHHHHhcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH--STPLPQL----LLDALPHSFVFFDVDLKSGS-GFDAVALKFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r--~~~~~~~----~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~ 76 (300)
|||+||||+||+|++++..|+.+|.. .++.+.++ +.++... +.+..+ .. ....++++.+ ++.+.++ +
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~-~el~L~Di~~~~~~~~~~~~dl~~~~~-~~-~~~~~i~~~~d~l~~al~---g 74 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFM-KDLVLIGREHSINKLEGLREDIYDALA-GT-RSDANIYVESDENLRIID---E 74 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTC-CEEEEEECGGGHHHHHHHHHHHHHHHT-TS-CCCCEEEEEETTCGGGGT---T
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCC-CEEEEEcCCCchhhhHHHHHHHHHhHH-hc-CCCeEEEeCCcchHHHhC---C
Confidence 58999999999999999999998842 35776776 3221211 111100 00 0112232211 1233333 9
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
+|+|||+||...... ......+..|+.++. ++++++++.+ +++|+++|
T Consensus 75 aD~Vi~~Ag~~~~~g--~~r~dl~~~N~~i~~-~i~~~i~~~~-~~~vlv~S 122 (313)
T 1hye_A 75 SDVVIITSGVPRKEG--MSRMDLAKTNAKIVG-KYAKKIAEIC-DTKIFVIT 122 (313)
T ss_dssp CSEEEECCSCCCCTT--CCHHHHHHHHHHHHH-HHHHHHHHHC-CCEEEECS
T ss_pred CCEEEECCCCCCCCC--CcHHHHHHHHHHHHH-HHHHHHHHhC-CeEEEEec
Confidence 999999999654221 234567899999996 9999999988 87777776
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.78 E-value=7.5e-09 Score=93.09 Aligned_cols=108 Identities=18% Similarity=0.256 Sum_probs=75.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++++|+|+| +|++|+++++.|++.| ++|++.+|+.++...+.+.++ .+..+.+|++|.+++.++++ ++|+|
T Consensus 1 M~~k~VlViG-aG~iG~~ia~~L~~~G---~~V~v~~R~~~~a~~la~~~~-~~~~~~~Dv~d~~~l~~~l~---~~DvV 72 (450)
T 1ff9_A 1 MATKSVLMLG-SGFVTRPTLDVLTDSG---IKVTVACRTLESAKKLSAGVQ-HSTPISLDVNDDAALDAEVA---KHDLV 72 (450)
T ss_dssp -CCCEEEEEC-CSTTHHHHHHHHHTTT---CEEEEEESSHHHHHHTTTTCT-TEEEEECCTTCHHHHHHHHT---TSSEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCc---CEEEEEECCHHHHHHHHHhcC-CceEEEeecCCHHHHHHHHc---CCcEE
Confidence 7789999998 8999999999999999 889999998666555544432 35567889999887777765 89999
Q ss_pred EEcccccCccccccChhhhhh--ccc-------ccchHHHHHhhhhccC
Q 022280 81 VNCAALSVPRVCENDPDSAMS--INV-------PSSLVNWLSSFTENKE 120 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~--~nv-------~~~~~~l~~~~~~~~~ 120 (300)
|||++...... .....++ .|+ ..+ .+++++++++|+
T Consensus 73 In~a~~~~~~~---i~~a~l~~g~~vvd~~~~~~~~-~~l~~aA~~aGv 117 (450)
T 1ff9_A 73 ISLIPYTFHAT---VIKSAIRQKKHVVTTSYVSPAM-MELDQAAKDAGI 117 (450)
T ss_dssp EECCC--CHHH---HHHHHHHHTCEEEESSCCCHHH-HHTHHHHHHTTC
T ss_pred EECCccccchH---HHHHHHhCCCeEEEeecccHHH-HHHHHHHHHCCC
Confidence 99998642110 0111111 122 133 378888888887
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.8e-09 Score=77.62 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=68.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++++|+|+|+ |.+|+.+++.|.+.| ++|++.+++++....+.. .....+.+|.++.+.+.+. ...++|+||
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g---~~v~~~d~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~--~~~~~d~vi 75 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMG---HEVLAVDINEEKVNAYAS---YATHAVIANATEENELLSL--GIRNFEYVI 75 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT---CCCEEEESCHHHHHTTTT---TCSEEEECCTTCHHHHHTT--TGGGCSEEE
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH---hCCEEEEeCCCCHHHHHhc--CCCCCCEEE
Confidence 3568999997 999999999999999 889888887544443322 2334577898886554433 133799999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
++++.. .+.| ..++..+++.++++++..++..
T Consensus 76 ~~~~~~------------~~~~-----~~~~~~~~~~~~~~ii~~~~~~ 107 (144)
T 2hmt_A 76 VAIGAN------------IQAS-----TLTTLLLKELDIPNIWVKAQNY 107 (144)
T ss_dssp ECCCSC------------HHHH-----HHHHHHHHHTTCSEEEEECCSH
T ss_pred ECCCCc------------hHHH-----HHHHHHHHHcCCCeEEEEeCCH
Confidence 987621 0122 1455556666777777666543
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-08 Score=80.72 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=58.6
Q ss_pred CCCCeEEEEcC----------------CccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCc
Q 022280 1 MSKKRVLVVGG----------------TGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64 (300)
Q Consensus 1 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (300)
|.+++|||||| ||.+|.+++++|+++| ++|+++.++.. .. .+..+ ...|+++.
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~G---a~V~l~~~~~~-l~-----~~~g~--~~~dv~~~ 74 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG---ANVTLVSGPVS-LP-----TPPFV--KRVDVMTA 74 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT---CEEEEEECSCC-CC-----CCTTE--EEEECCSH
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCC---CEEEEEECCcc-cc-----cCCCC--eEEccCcH
Confidence 56799999999 6999999999999999 89988877542 11 12223 35688776
Q ss_pred hh-HHHHHHhcCCCCEEEEcccccCc
Q 022280 65 SG-FDAVALKFGQPDVVVNCAALSVP 89 (300)
Q Consensus 65 ~~-~~~~~~~~~~~d~vih~a~~~~~ 89 (300)
++ ++.+.+.++++|++||+||+.+.
T Consensus 75 ~~~~~~v~~~~~~~Dili~~Aav~d~ 100 (226)
T 1u7z_A 75 LEMEAAVNASVQQQNIFIGCAAVADY 100 (226)
T ss_dssp HHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred HHHHHHHHHhcCCCCEEEECCcccCC
Confidence 55 34455667789999999998654
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-09 Score=88.74 Aligned_cols=111 Identities=15% Similarity=0.051 Sum_probs=73.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCC--CCCchhh----hhhc--CCCceeEEEeecCCchhHHHHHHhcC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH--STPLPQL----LLDA--LPHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r--~~~~~~~----~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
|||+||||+|++|++++..|+.+|.. .++.+.++ .+++... +.+. +...+. +..+ +. +.+.
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~-~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~-v~~~--~~-------~a~~ 69 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIA-DEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTR-VRQG--GY-------EDTA 69 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCC-SEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCE-EEEC--CG-------GGGT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-CEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcE-EEeC--CH-------HHhC
Confidence 58999999999999999999988742 36777777 3322211 1111 011222 2221 21 1233
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
+.|+|||+|+...... ......+..|+.++. ++++++.+.+.+.+|+++|
T Consensus 70 ~aDvVi~~ag~~~~~g--~~r~dl~~~N~~i~~-~i~~~i~~~~p~~~viv~S 119 (303)
T 1o6z_A 70 GSDVVVITAGIPRQPG--QTRIDLAGDNAPIME-DIQSSLDEHNDDYISLTTS 119 (303)
T ss_dssp TCSEEEECCCCCCCTT--CCHHHHHHHHHHHHH-HHHHHHHTTCSCCEEEECC
T ss_pred CCCEEEEcCCCCCCCC--CCHHHHHHHHHHHHH-HHHHHHHHHCCCcEEEEeC
Confidence 8999999999653221 234567899999995 9999999988877777765
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.9e-08 Score=73.47 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+|++|+|+|+ |.+|+++++.|.++| ++|++.+++++....+.+. ...++.+|.++++.++.+ ...++|+||
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g---~~V~~id~~~~~~~~~~~~---~~~~~~gd~~~~~~l~~~--~~~~~d~vi 75 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAG---KKVLAVDKSKEKIELLEDE---GFDAVIADPTDESFYRSL--DLEGVSAVL 75 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHHT---TCEEEECCTTCHHHHHHS--CCTTCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHC---CCcEEECCCCCHHHHHhC--CcccCCEEE
Confidence 3578999997 999999999999999 8999999987665555432 456788999998766544 223799999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+.+
T Consensus 76 ~~~~ 79 (141)
T 3llv_A 76 ITGS 79 (141)
T ss_dssp ECCS
T ss_pred EecC
Confidence 8764
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.7e-08 Score=85.71 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=70.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
.|||+|.|| |++|+.+++.|.+. ++|.+.+++.+..+.+. +....+..|+.|.+++.++++ +.|+||+
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~~----~~v~~~~~~~~~~~~~~----~~~~~~~~d~~d~~~l~~~~~---~~DvVi~ 83 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKDE----FDVYIGDVNNENLEKVK----EFATPLKVDASNFDKLVEVMK---EFELVIG 83 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTT----SEEEEEESCHHHHHHHT----TTSEEEECCTTCHHHHHHHHT---TCSEEEE
T ss_pred ccEEEEECC-CHHHHHHHHHHhcC----CCeEEEEcCHHHHHHHh----ccCCcEEEecCCHHHHHHHHh---CCCEEEE
Confidence 478999998 99999999998764 68888888765554443 345557899999888888877 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEee
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLS 127 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~S 127 (300)
++++.-. ..++++|.+.|+ +++=+|
T Consensus 84 ~~p~~~~-------------------~~v~~~~~~~g~-~yvD~s 108 (365)
T 3abi_A 84 ALPGFLG-------------------FKSIKAAIKSKV-DMVDVS 108 (365)
T ss_dssp CCCGGGH-------------------HHHHHHHHHHTC-EEEECC
T ss_pred ecCCccc-------------------chHHHHHHhcCc-ceEeee
Confidence 9864310 267777777777 666554
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.1e-08 Score=87.39 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
++++|+|+|+ |++|+++++.|++. | ++|++.+|+.++...+.+. ..+..+.+|+.|.+++.++++ ++|+|
T Consensus 22 ~~k~VlIiGA-GgiG~aia~~L~~~~g---~~V~v~~R~~~ka~~la~~--~~~~~~~~D~~d~~~l~~~l~---~~DvV 92 (467)
T 2axq_A 22 MGKNVLLLGS-GFVAQPVIDTLAANDD---INVTVACRTLANAQALAKP--SGSKAISLDVTDDSALDKVLA---DNDVV 92 (467)
T ss_dssp -CEEEEEECC-STTHHHHHHHHHTSTT---EEEEEEESSHHHHHHHHGG--GTCEEEECCTTCHHHHHHHHH---TSSEE
T ss_pred CCCEEEEECC-hHHHHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHh--cCCcEEEEecCCHHHHHHHHc---CCCEE
Confidence 4679999997 99999999999998 6 8899999987666665544 235556889999877777776 89999
Q ss_pred EEcccccCccc----cccChhhhhhcccccc-hHHHHHhhhhccC
Q 022280 81 VNCAALSVPRV----CENDPDSAMSINVPSS-LVNWLSSFTENKE 120 (300)
Q Consensus 81 ih~a~~~~~~~----~~~~~~~~~~~nv~~~-~~~l~~~~~~~~~ 120 (300)
||+++...... +...-..+++.+.... ...+++.+++.|+
T Consensus 93 In~tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv 137 (467)
T 2axq_A 93 ISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGI 137 (467)
T ss_dssp EECSCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTC
T ss_pred EECCchhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCC
Confidence 99988642110 0000011223333111 1377888888887
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.8e-08 Score=78.20 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=57.0
Q ss_pred CCCeEEEEcC----------------CccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCch
Q 022280 2 SKKRVLVVGG----------------TGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65 (300)
Q Consensus 2 ~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~ 65 (300)
.+|+|||||| ||.+|.+++++|+++| ++|+++.|+..... ..+..+. ..|+...+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~G---a~V~lv~~~~~~~~----~~~~~~~--~~~v~s~~ 72 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAG---YEVCLITTKRALKP----EPHPNLS--IREITNTK 72 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTT---CEEEEEECTTSCCC----CCCTTEE--EEECCSHH
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCC---CEEEEEeCCccccc----cCCCCeE--EEEHhHHH
Confidence 4789999999 9999999999999999 89999988743211 0122333 34555544
Q ss_pred h-HHHHHHhcCCCCEEEEcccccCcc
Q 022280 66 G-FDAVALKFGQPDVVVNCAALSVPR 90 (300)
Q Consensus 66 ~-~~~~~~~~~~~d~vih~a~~~~~~ 90 (300)
+ +..+.+.++++|++||+||..++.
T Consensus 73 em~~~v~~~~~~~Dili~aAAvsD~~ 98 (232)
T 2gk4_A 73 DLLIEMQERVQDYQVLIHSMAVSDYT 98 (232)
T ss_dssp HHHHHHHHHGGGCSEEEECSBCCSEE
T ss_pred HHHHHHHHhcCCCCEEEEcCcccccc
Confidence 3 344445667899999999987643
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.57 E-value=9.2e-08 Score=71.58 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++|+|+|+|+ |.+|+.+++.|.+.| ++|++.+++++....+.... .+..+.+|.++.+.+... ...++|+||
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g---~~v~~~d~~~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~--~~~~~d~vi 74 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKG---HDIVLIDIDKDICKKASAEI--DALVINGDCTKIKTLEDA--GIEDADMYI 74 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC--SSEEEESCTTSHHHHHHT--TTTTCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHhc--CcEEEEcCCCCHHHHHHc--CcccCCEEE
Confidence 3579999986 999999999999999 88999998765555444332 344567888876554332 134799999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
++..
T Consensus 75 ~~~~ 78 (140)
T 1lss_A 75 AVTG 78 (140)
T ss_dssp ECCS
T ss_pred EeeC
Confidence 9964
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=71.28 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC-CchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|..++|+|+|+ |.+|+++++.|.+.| ++|++.++++ +....+....+.++.++.+|.++++.++.. ...+.|+
T Consensus 1 ~~~~~vlI~G~-G~vG~~la~~L~~~g---~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~ 74 (153)
T 1id1_A 1 HRKDHFIVCGH-SILAINTILQLNQRG---QNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA--GIDRCRA 74 (153)
T ss_dssp CCCSCEEEECC-SHHHHHHHHHHHHTT---CCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH--TTTTCSE
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHHCC---CCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHc--ChhhCCE
Confidence 67789999995 999999999999999 8899998874 333333333345677889999998766554 1238999
Q ss_pred EEEccc
Q 022280 80 VVNCAA 85 (300)
Q Consensus 80 vih~a~ 85 (300)
||.+.+
T Consensus 75 vi~~~~ 80 (153)
T 1id1_A 75 ILALSD 80 (153)
T ss_dssp EEECSS
T ss_pred EEEecC
Confidence 998854
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.6e-07 Score=73.70 Aligned_cols=101 Identities=22% Similarity=0.136 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~ 79 (300)
.+++|||+||+|.||..+++.+...| .+|+++++++++.+... .++. . ...|..+.+..+.+.+.. +++|+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G---~~V~~~~~~~~~~~~~~-~~g~--~-~~~d~~~~~~~~~~~~~~~~~~~D~ 110 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIG---ARIYTTAGSDAKREMLS-RLGV--E-YVGDSRSVDFADEILELTDGYGVDV 110 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHH-TTCC--S-EEEETTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHH-HcCC--C-EEeeCCcHHHHHHHHHHhCCCCCeE
Confidence 35789999999999999999999999 89999998755444332 2322 2 235777766555554433 26999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
||+++|.. . +...++.++..| ++|.+++..
T Consensus 111 vi~~~g~~-----------~--------~~~~~~~l~~~G--~~v~~g~~~ 140 (198)
T 1pqw_A 111 VLNSLAGE-----------A--------IQRGVQILAPGG--RFIELGKKD 140 (198)
T ss_dssp EEECCCTH-----------H--------HHHHHHTEEEEE--EEEECSCGG
T ss_pred EEECCchH-----------H--------HHHHHHHhccCC--EEEEEcCCC
Confidence 99998621 0 124555554433 899988754
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.3e-06 Score=65.34 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|+|+ |.+|+.+++.|.+.| ++|++.+|+++....+... .+...+.+|..+.+.+... ...++|+||
T Consensus 18 ~~~~v~IiG~-G~iG~~la~~L~~~g---~~V~vid~~~~~~~~~~~~--~g~~~~~~d~~~~~~l~~~--~~~~ad~Vi 89 (155)
T 2g1u_A 18 KSKYIVIFGC-GRLGSLIANLASSSG---HSVVVVDKNEYAFHRLNSE--FSGFTVVGDAAEFETLKEC--GMEKADMVF 89 (155)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCGGGGGGSCTT--CCSEEEESCTTSHHHHHTT--TGGGCSEEE
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHhc--CCCcEEEecCCCHHHHHHc--CcccCCEEE
Confidence 3578999995 999999999999999 8999999987665544311 2344567888776544332 123799999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+.+
T Consensus 90 ~~~~ 93 (155)
T 2g1u_A 90 AFTN 93 (155)
T ss_dssp ECSS
T ss_pred EEeC
Confidence 9865
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.3e-07 Score=78.87 Aligned_cols=119 Identities=14% Similarity=0.104 Sum_probs=73.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCC----CceeeecCCCCC--chhhhhhcC-CCceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGK----PYDVAATHHSTP--LPQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~----~~~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
.+||.||||+|+||++++..|+..|.- +.++++.+..+. ........+ +....+. .++...+...+.++
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~-~~~~~~~~~~~~~~--- 78 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL-KDVIATDKEEIAFK--- 78 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTE-EEEEEESCHHHHTT---
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhccc-CCEEEcCCcHHHhC---
Confidence 468999999999999999999988731 122777777531 111111101 0001111 12222222233344
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC--eEEEeec
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN--LLIHLST 128 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~--~~v~~SS 128 (300)
+.|+|||+||...... ....+.++.|+.... ++++++.+.+.+ +++.+|-
T Consensus 79 daDvVvitAg~prkpG--~tR~dll~~N~~i~~-~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 79 DLDVAILVGSMPRRDG--MERKDLLKANVKIFK-CQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp TCSEEEECCSCCCCTT--CCTTTTHHHHHHHHH-HHHHHHHHHSCTTCEEEECSS
T ss_pred CCCEEEEeCCCCCCCC--CCHHHHHHHHHHHHH-HHHHHHHHhCCCCeEEEEcCC
Confidence 9999999998653221 244567888988884 999999998775 5777764
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=5.1e-06 Score=71.05 Aligned_cols=114 Identities=17% Similarity=0.111 Sum_probs=73.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCC---chhHHHHHHhcCCCCEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS---GSGFDAVALKFGQPDVV 80 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~d~v 80 (300)
|||.|+||+|++|+.++..|+..|.- .+|++.++++ .......+.+... ..++.. .+++++.++ +.|+|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~-~ev~L~Di~~--~~~~a~dL~~~~~--~~~l~~~~~t~d~~~a~~---~aDvV 72 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLV-SRLTLYDIAH--TPGVAADLSHIET--RATVKGYLGPEQLPDCLK---GCDVV 72 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTC-SEEEEEESSS--HHHHHHHHTTSSS--SCEEEEEESGGGHHHHHT---TCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEeCCc--cHHHHHHHhccCc--CceEEEecCCCCHHHHhC---CCCEE
Confidence 58999999999999999999988742 5788888875 2211111111110 112221 123555555 99999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEeec
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLST 128 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS 128 (300)
|++||...... ....+.+..|+.... .+++.+.+.... ++|++|-
T Consensus 73 vi~ag~~~~~g--~~r~dl~~~n~~i~~-~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 73 VIPAGVPRKPG--MTRDDLFNTNATIVA-TLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp EECCSCCCCTT--CCGGGGHHHHHHHHH-HHHHHHHHHCTTSEEEECSS
T ss_pred EECCCcCCCCC--CcHHHHHHHHHHHHH-HHHHHHHhhCCCeEEEEECC
Confidence 99998754221 123456778887774 888888886654 7777653
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.3e-06 Score=74.10 Aligned_cols=99 Identities=19% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhcc-----CCCceeeecCCCCCc---hhhhhhcCCCceeEEEeecCCchhHHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIE-----GKPYDVAATHHSTPL---PQLLLDALPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g-----~~~~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
|+|++|+|.||||++|+.|++.|++++ + ++++.+.++.+. .......+.... ..++.+.+ .+.+.
T Consensus 7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~--~ei~~l~s~~~agk~~~~~~~~l~~~~---~~~~~~~~--~~~~~ 79 (352)
T 2nqt_A 7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGR--LRIGALTAATSAGSTLGEHHPHLTPLA---HRVVEPTE--AAVLG 79 (352)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTS--EEEEEEEESSCTTSBGGGTCTTCGGGT---TCBCEECC--HHHHT
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCcc--EEEEEEECCCcCCCchhhhcccccccc---eeeeccCC--HHHhc
Confidence 456799999999999999999999887 4 677766533221 221111111000 11111211 11223
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
++|+||.|.+... + ..+++.+ +.|+ ++|-+|+..
T Consensus 80 ---~~DvVf~alg~~~------------------s-~~~~~~~-~~G~-~vIDlSa~~ 113 (352)
T 2nqt_A 80 ---GHDAVFLALPHGH------------------S-AVLAQQL-SPET-LIIDCGADF 113 (352)
T ss_dssp ---TCSEEEECCTTSC------------------C-HHHHHHS-CTTS-EEEECSSTT
T ss_pred ---CCCEEEECCCCcc------------------h-HHHHHHH-hCCC-EEEEECCCc
Confidence 8999999977431 1 3777777 7776 788888764
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.8e-06 Score=71.87 Aligned_cols=76 Identities=16% Similarity=0.083 Sum_probs=56.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+++|||+||+|.||..+++.+...| ++|+++++++++...+ .+++. . ...|.++.+++.+.+... +++|+|
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~~~~~G---~~V~~~~~~~~~~~~~-~~~g~--~-~~~d~~~~~~~~~~~~~~~~~~~d~v 218 (333)
T 1v3u_A 146 GETVLVSAAAGAVGSVVGQIAKLKG---CKVVGAAGSDEKIAYL-KQIGF--D-AAFNYKTVNSLEEALKKASPDGYDCY 218 (333)
T ss_dssp SCEEEEESTTBHHHHHHHHHHHHTT---CEEEEEESSHHHHHHH-HHTTC--S-EEEETTSCSCHHHHHHHHCTTCEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHH-HhcCC--c-EEEecCCHHHHHHHHHHHhCCCCeEE
Confidence 5789999999999999999999999 8999999876555444 34332 2 345877744444444322 369999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|+++|
T Consensus 219 i~~~g 223 (333)
T 1v3u_A 219 FDNVG 223 (333)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99988
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.96 E-value=8e-06 Score=71.55 Aligned_cols=105 Identities=15% Similarity=0.229 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|+|+ |.||+.+++.|...| .+|++.+|++++...+.+.++.. +..|..+.+++.+.+. ++|+||
T Consensus 165 ~~~~V~ViGa-G~iG~~~a~~l~~~G---a~V~~~d~~~~~~~~~~~~~g~~---~~~~~~~~~~l~~~~~---~~DvVi 234 (369)
T 2eez_A 165 APASVVILGG-GTVGTNAAKIALGMG---AQVTILDVNHKRLQYLDDVFGGR---VITLTATEANIKKSVQ---HADLLI 234 (369)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTTS---EEEEECCHHHHHHHHH---HCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHhcCce---EEEecCCHHHHHHHHh---CCCEEE
Confidence 4689999998 999999999999999 89999999876555444433332 4567777777777766 799999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
++++..... .+ .+. + ...++.++. + ..+|.+|+..
T Consensus 235 ~~~g~~~~~----~~------~li-~-~~~l~~mk~-g-g~iV~v~~~~ 269 (369)
T 2eez_A 235 GAVLVPGAK----AP------KLV-T-RDMLSLMKE-G-AVIVDVAVDQ 269 (369)
T ss_dssp ECCC-----------------CCS-C-HHHHTTSCT-T-CEEEECC---
T ss_pred ECCCCCccc----cc------hhH-H-HHHHHhhcC-C-CEEEEEecCC
Confidence 998853210 00 111 1 255565543 3 3788888643
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.8e-05 Score=68.54 Aligned_cols=100 Identities=14% Similarity=-0.011 Sum_probs=67.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+++|||+||+|.+|..+++.+...| ++|+++++++++.+.+.+ ++. . ...|..+.+..+.+.+.. .++|+|
T Consensus 167 g~~vlV~Gasg~iG~~~~~~a~~~G---~~Vi~~~~~~~~~~~~~~-~ga--~-~~~d~~~~~~~~~~~~~~~~~~~d~v 239 (343)
T 2eih_A 167 GDDVLVMAAGSGVSVAAIQIAKLFG---ARVIATAGSEDKLRRAKA-LGA--D-ETVNYTHPDWPKEVRRLTGGKGADKV 239 (343)
T ss_dssp TCEEEECSTTSTTHHHHHHHHHHTT---CEEEEEESSHHHHHHHHH-HTC--S-EEEETTSTTHHHHHHHHTTTTCEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHh-cCC--C-EEEcCCcccHHHHHHHHhCCCCceEE
Confidence 5789999999999999999999999 899999988665544432 222 2 235776654333333322 269999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
|+++| ... +...++.++..| +++.+++..
T Consensus 240 i~~~g-~~~------------------~~~~~~~l~~~G--~~v~~g~~~ 268 (343)
T 2eih_A 240 VDHTG-ALY------------------FEGVIKATANGG--RIAIAGASS 268 (343)
T ss_dssp EESSC-SSS------------------HHHHHHHEEEEE--EEEESSCCC
T ss_pred EECCC-HHH------------------HHHHHHhhccCC--EEEEEecCC
Confidence 99988 210 125555555444 888887643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.2e-05 Score=69.88 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=56.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcC--CCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFG--QPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~d~v 80 (300)
+++|||+||+|.||..+++.+...| ++|+++++++++... ...++. . ...|..+.+..+.+.+..+ ++|+|
T Consensus 171 g~~vlV~GasggiG~~~~~~a~~~G---a~Vi~~~~~~~~~~~-~~~~ga--~-~~~d~~~~~~~~~~~~~~~~~~~D~v 243 (351)
T 1yb5_A 171 GESVLVHGASGGVGLAACQIARAYG---LKILGTAGTEEGQKI-VLQNGA--H-EVFNHREVNYIDKIKKYVGEKGIDII 243 (351)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHH-HHHTTC--S-EEEETTSTTHHHHHHHHHCTTCEEEE
T ss_pred cCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCChhHHHH-HHHcCC--C-EEEeCCCchHHHHHHHHcCCCCcEEE
Confidence 5789999999999999999999999 899999988655543 333332 2 3457766554455544332 69999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|+++|
T Consensus 244 i~~~G 248 (351)
T 1yb5_A 244 IEMLA 248 (351)
T ss_dssp EESCH
T ss_pred EECCC
Confidence 99987
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.6e-05 Score=68.99 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~ 79 (300)
.+++|||+||+|.||..+++.+...| .+|+++++++++.+.+ ..++. . ...|.++.+++.+.+... +++|+
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~G---a~V~~~~~~~~~~~~~-~~~g~--~-~~~d~~~~~~~~~~~~~~~~~~~D~ 241 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMG---YRVLGIDGGEGKEELF-RSIGG--E-VFIDFTKEKDIVGAVLKATDGGAHG 241 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECSTTHHHHH-HHTTC--C-EEEETTTCSCHHHHHHHHHTSCEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CcEEEEcCCHHHHHHH-HHcCC--c-eEEecCccHhHHHHHHHHhCCCCCE
Confidence 35789999999999999999999999 8999999887665433 33332 2 335877555554444322 26999
Q ss_pred EEEccc
Q 022280 80 VVNCAA 85 (300)
Q Consensus 80 vih~a~ 85 (300)
||+++|
T Consensus 242 vi~~~g 247 (347)
T 2hcy_A 242 VINVSV 247 (347)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 999987
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=4.9e-06 Score=76.26 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++++|||| |++|++++..|++.| ++|++..|+.++...+.+.++..+. ++.+.+.+ ....+|+||
T Consensus 363 ~~k~vlV~Ga-GGig~aia~~L~~~G---~~V~i~~R~~~~a~~la~~~~~~~~----~~~dl~~~-----~~~~~DilV 429 (523)
T 2o7s_A 363 ASKTVVVIGA-GGAGKALAYGAKEKG---AKVVIANRTYERALELAEAIGGKAL----SLTDLDNY-----HPEDGMVLA 429 (523)
T ss_dssp ---CEEEECC-SHHHHHHHHHHHHHC---C-CEEEESSHHHHHHHHHHTTC-CE----ETTTTTTC-------CCSEEEE
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHcCCcee----eHHHhhhc-----cccCceEEE
Confidence 3568999998 699999999999999 8899999987776666665533221 22221111 112589999
Q ss_pred EcccccCcc------c---cccChhhhhhcccccchHHHHHhhhhccC
Q 022280 82 NCAALSVPR------V---CENDPDSAMSINVPSSLVNWLSSFTENKE 120 (300)
Q Consensus 82 h~a~~~~~~------~---~~~~~~~~~~~nv~~~~~~l~~~~~~~~~ 120 (300)
|+++..... . ....+...+++|..+..-.+++.+++.|.
T Consensus 430 N~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a~~~G~ 477 (523)
T 2o7s_A 430 NTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGA 477 (523)
T ss_dssp ECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHHHTTTC
T ss_pred ECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHHHHCCC
Confidence 999864211 1 11223456778877643267777766665
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-05 Score=69.66 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=56.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+++|||+||+|.||..+++.+...| ++|+++++++++.+.+.+ ++. . ...|..+.+..+.+.+.. .++|+|
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~a~~~G---~~Vi~~~~~~~~~~~~~~-~g~--~-~~~d~~~~~~~~~i~~~~~~~~~d~v 218 (333)
T 1wly_A 146 GDYVLIHAAAGGMGHIMVPWARHLG---ATVIGTVSTEEKAETARK-LGC--H-HTINYSTQDFAEVVREITGGKGVDVV 218 (333)
T ss_dssp TCEEEETTTTSTTHHHHHHHHHHTT---CEEEEEESSHHHHHHHHH-HTC--S-EEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH-cCC--C-EEEECCCHHHHHHHHHHhCCCCCeEE
Confidence 5789999999999999999999999 899999988655444332 222 2 335777655444444432 269999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|+++|.
T Consensus 219 i~~~g~ 224 (333)
T 1wly_A 219 YDSIGK 224 (333)
T ss_dssp EECSCT
T ss_pred EECCcH
Confidence 999883
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.5e-06 Score=66.58 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=57.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|+|+|+ |.+|+++++.|.++| ++|++.+++++....+.+.. +..++.+|.++++.++.. ...++|+||-+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g---~~v~vid~~~~~~~~l~~~~--~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~ 72 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRK---YGVVIINKDRELCEEFAKKL--KATIIHGDGSHKEILRDA--EVSKNDVVVIL 72 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHHHS--SSEEEESCTTSHHHHHHH--TCCTTCEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHc--CCeEEEcCCCCHHHHHhc--CcccCCEEEEe
Confidence 58999995 999999999999999 88999998876666554432 355689999998766554 13489999976
Q ss_pred cc
Q 022280 84 AA 85 (300)
Q Consensus 84 a~ 85 (300)
.+
T Consensus 73 ~~ 74 (218)
T 3l4b_C 73 TP 74 (218)
T ss_dssp CS
T ss_pred cC
Confidence 43
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-05 Score=69.68 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=56.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+++|||+||+|.||..+++.+...| ++|+++++++++.+.+.+ ++. . ...|..+.+..+.+.+.. .++|+|
T Consensus 141 g~~vlV~Ga~ggiG~~~~~~a~~~G---~~V~~~~~~~~~~~~~~~-~g~--~-~~~~~~~~~~~~~~~~~~~~~~~D~v 213 (327)
T 1qor_A 141 DEQFLFHAAAGGVGLIACQWAKALG---AKLIGTVGTAQKAQSALK-AGA--W-QVINYREEDLVERLKEITGGKKVRVV 213 (327)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHHH-HTC--S-EEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHH-cCC--C-EEEECCCccHHHHHHHHhCCCCceEE
Confidence 5789999999999999999999999 899999988655444433 222 2 335777766555554433 269999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|+++|
T Consensus 214 i~~~g 218 (327)
T 1qor_A 214 YDSVG 218 (327)
T ss_dssp EECSC
T ss_pred EECCc
Confidence 99988
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.90 E-value=4e-06 Score=72.31 Aligned_cols=115 Identities=9% Similarity=0.071 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhcCCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDALPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|+++||.|+|++|++|+.++..|+..|.. .+|++.+...++... +.+..-.. .++.-..+..+.++ +
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~-~evvLiDi~~~k~~g~a~DL~~~~~~~-----~~i~~t~d~~~al~---d 76 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLT-PNLCLYDPFAVGLEGVAEEIRHCGFEG-----LNLTFTSDIKEALT---D 76 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCC-SCEEEECSCHHHHHHHHHHHHHHCCTT-----CCCEEESCHHHHHT---T
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCC-CEEEEEeCCchhHHHHHHhhhhCcCCC-----CceEEcCCHHHHhC---C
Confidence 56789999999999999999999999842 378888876543332 22211000 11111123444455 8
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCe--EEEee
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL--LIHLS 127 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~--~v~~S 127 (300)
.|+||.+||...... ....+.+..|+.... .+++.+.+...+. ++.+|
T Consensus 77 ADvVvitaG~p~kpG--~~R~dLl~~N~~I~~-~i~~~i~~~~p~a~~vlvvs 126 (343)
T 3fi9_A 77 AKYIVSSGGAPRKEG--MTREDLLKGNAEIAA-QLGKDIKSYCPDCKHVIIIF 126 (343)
T ss_dssp EEEEEECCC---------CHHHHHHHHHHHHH-HHHHHHHHHCTTCCEEEECS
T ss_pred CCEEEEccCCCCCCC--CCHHHHHHHHHHHHH-HHHHHHHHhccCcEEEEEec
Confidence 999999998643221 134456778877764 8888888866543 45565
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-05 Score=69.69 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=55.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+++|||+||+|.||..+++.+...| .+|+++++++++.+.+.++++. . ...|..+.+++.+.+... +++|+|
T Consensus 156 g~~vlI~Ga~g~iG~~~~~~a~~~G---~~V~~~~~~~~~~~~~~~~~g~--~-~~~d~~~~~~~~~~~~~~~~~~~d~v 229 (345)
T 2j3h_A 156 GETVYVSAASGAVGQLVGQLAKMMG---CYVVGSAGSKEKVDLLKTKFGF--D-DAFNYKEESDLTAALKRCFPNGIDIY 229 (345)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTSCC--S-EEEETTSCSCSHHHHHHHCTTCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHcCC--c-eEEecCCHHHHHHHHHHHhCCCCcEE
Confidence 5789999999999999999999999 8999999886655544434432 2 234776654443333322 369999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|+++|
T Consensus 230 i~~~g 234 (345)
T 2j3h_A 230 FENVG 234 (345)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99987
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.6e-05 Score=69.31 Aligned_cols=76 Identities=17% Similarity=0.080 Sum_probs=55.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVVV 81 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~vi 81 (300)
++|||+||+|.||..+++.+...| + +|+++++++++...+.++++. . ...|..+.+..+.+.+.. +++|+||
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~G---a~~Vi~~~~~~~~~~~~~~~~g~--~-~~~d~~~~~~~~~~~~~~~~~~d~vi 235 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLG---CSRVVGICGTHEKCILLTSELGF--D-AAINYKKDNVAEQLRESCPAGVDVYF 235 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTT---CSEEEEEESCHHHHHHHHHTSCC--S-EEEETTTSCHHHHHHHHCTTCEEEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCC---CCeEEEEeCCHHHHHHHHHHcCC--c-eEEecCchHHHHHHHHhcCCCCCEEE
Confidence 799999999999999999999999 8 899999886555544443432 2 345777654434443332 2699999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
+++|
T Consensus 236 ~~~G 239 (357)
T 2zb4_A 236 DNVG 239 (357)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9988
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=5e-06 Score=66.88 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=50.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|+|+||+|++|+++++.|++.| ++|++.+|+++....+.+..+..+. ..|+. .+++.+.++ ++|+||++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~---~~D~Vi~~ 71 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG---HEIVVGSRREEKAEAKAAEYRRIAG--DASIT-GMKNEDAAE---ACDIAVLT 71 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESSHHHHHHHHHHHHHHHS--SCCEE-EEEHHHHHH---HCSEEEEC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhccccc--cCCCC-hhhHHHHHh---cCCEEEEe
Confidence 589999999999999999999999 8999999886555444332110000 01222 233555555 78999998
Q ss_pred cc
Q 022280 84 AA 85 (300)
Q Consensus 84 a~ 85 (300)
..
T Consensus 72 ~~ 73 (212)
T 1jay_A 72 IP 73 (212)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1.5e-05 Score=69.32 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=56.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+++|||+||+|.||..+++.+...| ++|+++++++++...+ ..++. . ...|..+.+..+.+.+.. .++|+|
T Consensus 163 g~~vlV~Ga~ggiG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~-~~~g~--~-~~~~~~~~~~~~~~~~~~~~~~~d~v 235 (354)
T 2j8z_A 163 GDYVLIHAGLSGVGTAAIQLTRMAG---AIPLVTAGSQKKLQMA-EKLGA--A-AGFNYKKEDFSEATLKFTKGAGVNLI 235 (354)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHH-HHHTC--S-EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHH-HHcCC--c-EEEecCChHHHHHHHHHhcCCCceEE
Confidence 5789999999999999999999999 8999999886555444 33322 2 345777665555554433 269999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|+|+|.
T Consensus 236 i~~~G~ 241 (354)
T 2j8z_A 236 LDCIGG 241 (354)
T ss_dssp EESSCG
T ss_pred EECCCc
Confidence 999983
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.86 E-value=7.3e-06 Score=64.31 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=55.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+++|+|+| .|.+|+.+++.|.+. | ++|++.+++++....+.+. ++..+.+|.++.+.+.++ ....++|+||
T Consensus 39 ~~~v~IiG-~G~~G~~~a~~L~~~~g---~~V~vid~~~~~~~~~~~~---g~~~~~gd~~~~~~l~~~-~~~~~ad~vi 110 (183)
T 3c85_A 39 HAQVLILG-MGRIGTGAYDELRARYG---KISLGIEIREEAAQQHRSE---GRNVISGDATDPDFWERI-LDTGHVKLVL 110 (183)
T ss_dssp TCSEEEEC-CSHHHHHHHHHHHHHHC---SCEEEEESCHHHHHHHHHT---TCCEEECCTTCHHHHHTB-CSCCCCCEEE
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhccC---CeEEEEECCHHHHHHHHHC---CCCEEEcCCCCHHHHHhc-cCCCCCCEEE
Confidence 56899998 699999999999999 9 8899999987665554432 355578898886644432 0134799999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+.+
T Consensus 111 ~~~~ 114 (183)
T 3c85_A 111 LAMP 114 (183)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 8754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.7e-05 Score=59.41 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=57.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+++|+|.|+ |.+|+.+++.|.+.| ++|++.+++++....+.+ .++..+.+|.++++.++.. ...+.|+||-
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g---~~v~vid~~~~~~~~~~~---~g~~~i~gd~~~~~~l~~a--~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASD---IPLVVIETSRTRVDELRE---RGVRAVLGNAANEEIMQLA--HLECAKWLIL 77 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHH---TTCEEEESCTTSHHHHHHT--TGGGCSEEEE
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHH---cCCCEEECCCCCHHHHHhc--CcccCCEEEE
Confidence 468999995 999999999999999 899999998776665543 3556688999998765543 1237899998
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+.+
T Consensus 78 ~~~ 80 (140)
T 3fwz_A 78 TIP 80 (140)
T ss_dssp CCS
T ss_pred ECC
Confidence 754
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.6e-05 Score=58.82 Aligned_cols=72 Identities=21% Similarity=0.289 Sum_probs=53.2
Q ss_pred CccchHHHHHhhhhccCCCceeeecCCCCCch------hhhhhcCCCceeEEEeecCCc--hhHHHHHH----hcCCCCE
Q 022280 12 TGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP------QLLLDALPHSFVFFDVDLKSG--SGFDAVAL----KFGQPDV 79 (300)
Q Consensus 12 tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~------~~~~~~~~~~~~~~~~D~~~~--~~~~~~~~----~~~~~d~ 79 (300)
+|.++.+.++.|++.| ++|++..|+.... .......+.....+.+|++++ ++++++++ .+++ |+
T Consensus 25 s~~p~~a~a~~La~~G---a~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dV 100 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQAG---VDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DV 100 (157)
T ss_dssp EBCCCHHHHHHHHHTT---CCEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CE
T ss_pred cCCCCHHHHHHHHHcC---CCEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CE
Confidence 5689999999999999 8898888864432 223333455566678899999 77665553 4667 99
Q ss_pred EEEccccc
Q 022280 80 VVNCAALS 87 (300)
Q Consensus 80 vih~a~~~ 87 (300)
+|||||..
T Consensus 101 LVnnAgg~ 108 (157)
T 3gxh_A 101 LVHCLANY 108 (157)
T ss_dssp EEECSBSH
T ss_pred EEECCCCC
Confidence 99999864
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.4e-05 Score=66.99 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++++|+|+ |.+|+++++.|++.| .+|++..|+.++...+.+.++.... .+..+.+++.. +++|+||
T Consensus 118 ~~k~vlViGa-Gg~g~a~a~~L~~~G---~~V~v~~R~~~~~~~la~~~~~~~~---~~~~~~~~~~~-----~~~DivV 185 (271)
T 1nyt_A 118 PGLRILLIGA-GGASRGVLLPLLSLD---CAVTITNRTVSRAEELAKLFAHTGS---IQALSMDELEG-----HEFDLII 185 (271)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSHHHHHHHHHHTGGGSS---EEECCSGGGTT-----CCCSEEE
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHhhccCC---eeEecHHHhcc-----CCCCEEE
Confidence 4689999997 789999999999999 8999999987666666554422111 22333332221 4899999
Q ss_pred EcccccC
Q 022280 82 NCAALSV 88 (300)
Q Consensus 82 h~a~~~~ 88 (300)
++++...
T Consensus 186 n~t~~~~ 192 (271)
T 1nyt_A 186 NATSSGI 192 (271)
T ss_dssp ECCSCGG
T ss_pred ECCCCCC
Confidence 9998643
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.2e-05 Score=67.84 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~v 80 (300)
.+++|||+||+|.||..+++.+...| .+|+++++++++.+.+.++++. . ...|..+.+..+.+.+.. +++|+|
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~~~g~--~-~~~~~~~~~~~~~~~~~~~~~~d~v 222 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKG---CRVVGIAGGAEKCRFLVEELGF--D-GAIDYKNEDLAAGLKRECPKGIDVF 222 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTTCC--S-EEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHcCC--C-EEEECCCHHHHHHHHHhcCCCceEE
Confidence 36799999999999999999999999 8999999887665555344433 2 335666655444444332 369999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccc
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVY 132 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~ 132 (300)
|+++|.. .+...++.++.. ++++.+++...+
T Consensus 223 i~~~g~~-------------------~~~~~~~~l~~~--G~iv~~G~~~~~ 253 (336)
T 4b7c_A 223 FDNVGGE-------------------ILDTVLTRIAFK--ARIVLCGAISQY 253 (336)
T ss_dssp EESSCHH-------------------HHHHHHTTEEEE--EEEEECCCGGGG
T ss_pred EECCCcc-------------------hHHHHHHHHhhC--CEEEEEeecccc
Confidence 9998731 012444444433 388888875543
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.77 E-value=2.8e-05 Score=67.24 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=58.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeE-EEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVF-FDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
|++|.|.||||++|+.+++.|.++.+ ++++.+.++.+....+.... +.... ....+.+.+ + +.++|+||
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~--~elv~v~s~~~~g~~~~~~~-~~~~g~~~~~~~~~~---~----~~~vDvV~ 73 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPY--LEVKQVTSRRFAGEPVHFVH-PNLRGRTNLKFVPPE---K----LEPADILV 73 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTT--EEEEEEBCSTTTTSBGGGTC-GGGTTTCCCBCBCGG---G----CCCCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCC--cEEEEEECchhhCchhHHhC-chhcCcccccccchh---H----hcCCCEEE
Confidence 67999999999999999999998753 68777665433222221111 11000 011122222 1 23899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecc
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTD 129 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (300)
.|.+... . ..++..+.+.|+ ++|-.|+.
T Consensus 74 ~a~g~~~------------------s-~~~a~~~~~aG~-~VId~Sa~ 101 (345)
T 2ozp_A 74 LALPHGV------------------F-AREFDRYSALAP-VLVDLSAD 101 (345)
T ss_dssp ECCCTTH------------------H-HHTHHHHHTTCS-EEEECSST
T ss_pred EcCCcHH------------------H-HHHHHHHHHCCC-EEEEcCcc
Confidence 9976321 0 255666667787 68888874
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=4.2e-05 Score=66.05 Aligned_cols=95 Identities=20% Similarity=0.095 Sum_probs=57.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecC-CCCC-chhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH-HSTP-LPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~-r~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+|+|+|.||||.+|+.+++.|+++++...+++... ++.. +... +.. ......|. +++. +.++|+|
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~----~~g-~~i~~~~~-~~~~-------~~~~DvV 72 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG----FAE-SSLRVGDV-DSFD-------FSSVGLA 72 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE----ETT-EEEECEEG-GGCC-------GGGCSEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc----cCC-cceEEecC-CHHH-------hcCCCEE
Confidence 47999999999999999999998776546665543 2211 1100 111 11111122 1221 2279999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
|.|.+... + ..+++.+.+.|+ ++|.+|+..
T Consensus 73 ~~a~g~~~------------------s-~~~a~~~~~aG~-kvId~Sa~~ 102 (340)
T 2hjs_A 73 FFAAAAEV------------------S-RAHAERARAAGC-SVIDLSGAL 102 (340)
T ss_dssp EECSCHHH------------------H-HHHHHHHHHTTC-EEEETTCTT
T ss_pred EEcCCcHH------------------H-HHHHHHHHHCCC-EEEEeCCCC
Confidence 99976321 1 366777777788 577777754
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.69 E-value=2.8e-05 Score=67.65 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
++++|.|.||+|++|+.+++.|.++.. ++++++.++.+....+... +...+ ..|+.-.+ ++. +.++|
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~--~elvai~~~~~~g~~~~~~~~~~~~~v---~~dl~~~~--~~~---~~~vD 84 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPH--FQVTLMTADRKAGQSMESVFPHLRAQK---LPTLVSVK--DAD---FSTVD 84 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSS--EEEEEEBCSTTTTSCHHHHCGGGTTSC---CCCCBCGG--GCC---GGGCS
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCC--cEEEEEeCchhcCCCHHHhCchhcCcc---cccceecc--hhH---hcCCC
Confidence 346899999999999999999998764 6877776543322222111 11110 02332211 112 23799
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
+||.|.+.... ...+..+ +.|+ ++|-.|+..
T Consensus 85 vVf~atp~~~s-------------------~~~a~~~-~aG~-~VId~sa~~ 115 (359)
T 1xyg_A 85 AVFCCLPHGTT-------------------QEIIKEL-PTAL-KIVDLSADF 115 (359)
T ss_dssp EEEECCCTTTH-------------------HHHHHTS-CTTC-EEEECSSTT
T ss_pred EEEEcCCchhH-------------------HHHHHHH-hCCC-EEEECCccc
Confidence 99999763211 3666677 7777 688888743
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=4.6e-05 Score=64.86 Aligned_cols=78 Identities=6% Similarity=0.059 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCC---CCchhhhhhcCCC--ceeEEEeecCCchhHHHHHHhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHS---TPLPQLLLDALPH--SFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~---~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
.+++++|+|+ |.+|++++..|++.| . +|++..|+ .++...+.+.+.. .......++.+.+++.+.+.
T Consensus 153 ~gk~~lVlGa-GG~g~aia~~L~~~G---a~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~--- 225 (315)
T 3tnl_A 153 IGKKMTICGA-GGAATAICIQAALDG---VKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIA--- 225 (315)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTT---CSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH---
T ss_pred cCCEEEEECC-ChHHHHHHHHHHHCC---CCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhc---
Confidence 4789999996 899999999999999 6 79999998 4445544433311 12223345666555555555
Q ss_pred CCCEEEEcccc
Q 022280 76 QPDVVVNCAAL 86 (300)
Q Consensus 76 ~~d~vih~a~~ 86 (300)
..|+||++-..
T Consensus 226 ~aDiIINaTp~ 236 (315)
T 3tnl_A 226 ESVIFTNATGV 236 (315)
T ss_dssp TCSEEEECSST
T ss_pred CCCEEEECccC
Confidence 89999998653
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.68 E-value=3.5e-05 Score=62.89 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=55.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
.++|+|.|+ |.+|+.+++.|.+.| + |++..++++....+. .++.++.+|.++++.++.. ...+.|.||.
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g---~-v~vid~~~~~~~~~~----~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~ 77 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSE---V-FVLAEDENVRKKVLR----SGANFVHGDPTRVSDLEKA--NVRGARAVIV 77 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSE---E-EEEESCGGGHHHHHH----TTCEEEESCTTCHHHHHHT--TCTTCSEEEE
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCC---e-EEEEECCHHHHHHHh----cCCeEEEcCCCCHHHHHhc--CcchhcEEEE
Confidence 468999996 999999999999999 9 999988866555443 3467789999998765544 1338999998
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+.+
T Consensus 78 ~~~ 80 (234)
T 2aef_A 78 DLE 80 (234)
T ss_dssp CCS
T ss_pred cCC
Confidence 743
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=5.3e-05 Score=65.71 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d 78 (300)
.+++|||+||+|.||..+++.+... | .+|+++++++++.+.+. +++. . ...|..+.+..+.+.+.. +++|
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~G---a~Vi~~~~~~~~~~~~~-~~g~--~-~~~~~~~~~~~~~~~~~~~~~~~d 242 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSG---ATIIGVDVREEAVEAAK-RAGA--D-YVINASMQDPLAEIRRITESKGVD 242 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC---CEEEEEESSHHHHHHHH-HHTC--S-EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCC---CeEEEEcCCHHHHHHHH-HhCC--C-EEecCCCccHHHHHHHHhcCCCce
Confidence 3578999999999999999999999 9 88999988865544433 2322 2 234666655444443333 4799
Q ss_pred EEEEcccc
Q 022280 79 VVVNCAAL 86 (300)
Q Consensus 79 ~vih~a~~ 86 (300)
+||+++|.
T Consensus 243 ~vi~~~g~ 250 (347)
T 1jvb_A 243 AVIDLNNS 250 (347)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999873
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.65 E-value=9.2e-05 Score=63.98 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=56.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+++|||+||+|.||...++.+...| .+|+++++++++.+.+.+ ++.. ...|..+.+..+.+.+.. .++|+|
T Consensus 145 g~~VlV~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~-lga~---~~~~~~~~~~~~~~~~~~~~~g~Dvv 217 (340)
T 3gms_A 145 NDVLLVNACGSAIGHLFAQLSQILN---FRLIAVTRNNKHTEELLR-LGAA---YVIDTSTAPLYETVMELTNGIGADAA 217 (340)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHHT---CEEEEEESSSTTHHHHHH-HTCS---EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHh-CCCc---EEEeCCcccHHHHHHHHhCCCCCcEE
Confidence 5799999999999999999999999 899999998777665543 3222 234666555444444432 269999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|+++|.
T Consensus 218 id~~g~ 223 (340)
T 3gms_A 218 IDSIGG 223 (340)
T ss_dssp EESSCH
T ss_pred EECCCC
Confidence 999873
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=5.1e-05 Score=65.15 Aligned_cols=77 Identities=16% Similarity=0.013 Sum_probs=56.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcC--CCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFG--QPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~d~v 80 (300)
+++|||+||+|.||...++.+...| .+|+++++++++.+.+. +++. . ...|..+.+..+.+.+..+ ++|+|
T Consensus 141 g~~VlV~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~-~~Ga--~-~~~~~~~~~~~~~~~~~~~~~g~Dvv 213 (325)
T 3jyn_A 141 GEIILFHAAAGGVGSLACQWAKALG---AKLIGTVSSPEKAAHAK-ALGA--W-ETIDYSHEDVAKRVLELTDGKKCPVV 213 (325)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHH-HHTC--S-EEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHH-HcCC--C-EEEeCCCccHHHHHHHHhCCCCceEE
Confidence 6789999999999999999999999 89999998866555443 3322 1 2356666554454444332 69999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|+++|.
T Consensus 214 id~~g~ 219 (325)
T 3jyn_A 214 YDGVGQ 219 (325)
T ss_dssp EESSCG
T ss_pred EECCCh
Confidence 999873
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.63 E-value=2.7e-05 Score=58.47 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=51.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+++|+|+|+ |.+|+.+++.|.+.| ++|++.+|++++...+.+.++. +....+++.+.++ ++|+||.
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g---~~v~v~~r~~~~~~~~a~~~~~-------~~~~~~~~~~~~~---~~Divi~ 86 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQ---YKVTVAGRNIDHVRAFAEKYEY-------EYVLINDIDSLIK---NNDVIIT 86 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTT---CEEEEEESCHHHHHHHHHHHTC-------EEEECSCHHHHHH---TCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEcCCHHHHHHHHHHhCC-------ceEeecCHHHHhc---CCCEEEE
Confidence 579999995 999999999999999 7899999987766666555431 1112233455555 8999999
Q ss_pred cccc
Q 022280 83 CAAL 86 (300)
Q Consensus 83 ~a~~ 86 (300)
+.+.
T Consensus 87 at~~ 90 (144)
T 3oj0_A 87 ATSS 90 (144)
T ss_dssp CSCC
T ss_pred eCCC
Confidence 8763
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00011 Score=62.19 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=56.5
Q ss_pred CCCe-EEEE-cCC-----------------ccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC------------
Q 022280 2 SKKR-VLVV-GGT-----------------GYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL------------ 50 (300)
Q Consensus 2 ~~~~-ilIt-Gat-----------------G~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~------------ 50 (300)
.+++ |||| ||| |-.|.+++++++.+| ++|+.+.++.. .......+
T Consensus 35 ~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~G---a~V~lv~g~~s-l~p~~r~~~~~~~~~~~~~~ 110 (313)
T 1p9o_A 35 QGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAG---YGVLFLYRARS-AFPYAHRFPPQTWLSALRPS 110 (313)
T ss_dssp TTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTT---CEEEEEEETTS-CCTTGGGSCHHHHHHHCEEC
T ss_pred cCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCC---CEEEEEecCCC-cCcchhccCccchhhhhccc
Confidence 3566 9999 557 889999999999999 89998887532 11111111
Q ss_pred ---CCceeEEEeecCCchhHHHHH----------------------------------HhcCCCCEEEEcccccCcc
Q 022280 51 ---PHSFVFFDVDLKSGSGFDAVA----------------------------------LKFGQPDVVVNCAALSVPR 90 (300)
Q Consensus 51 ---~~~~~~~~~D~~~~~~~~~~~----------------------------------~~~~~~d~vih~a~~~~~~ 90 (300)
+.++..+..|+...+.+.+.+ +.++..|++|++|++.++.
T Consensus 111 ~~~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsDf~ 187 (313)
T 1p9o_A 111 GPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFY 187 (313)
T ss_dssp CC-CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCSEE
T ss_pred cccccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhhcc
Confidence 123334666776655544433 2245799999999987654
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.59 E-value=2e-05 Score=66.22 Aligned_cols=75 Identities=24% Similarity=0.308 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCC---ceeEEEeecCCchhHHHHHHhcCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPH---SFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
.+++++|+|+ |.+|++++..|++.| . +|++..|+.++...+.+.+.. .+.....+ .+++.+.++ ..
T Consensus 126 ~~k~vlVlGa-GG~g~aia~~L~~~G---~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~---~~~l~~~l~---~~ 195 (283)
T 3jyo_A 126 KLDSVVQVGA-GGVGNAVAYALVTHG---VQKLQVADLDTSRAQALADVINNAVGREAVVGVD---ARGIEDVIA---AA 195 (283)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTT---CSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEEC---STTHHHHHH---HS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcC---HHHHHHHHh---cC
Confidence 4689999997 899999999999999 6 699999987776666544321 12222223 234555555 78
Q ss_pred CEEEEcccc
Q 022280 78 DVVVNCAAL 86 (300)
Q Consensus 78 d~vih~a~~ 86 (300)
|+||++-..
T Consensus 196 DiVInaTp~ 204 (283)
T 3jyo_A 196 DGVVNATPM 204 (283)
T ss_dssp SEEEECSST
T ss_pred CEEEECCCC
Confidence 999998653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=7.8e-05 Score=64.26 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=55.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+++|||+||+|.||...++.+...| .+|+++++++++... ..+++.. ...|..+.+..+.+.+.. .++|+|
T Consensus 149 g~~vlV~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~-~~~~ga~---~~~~~~~~~~~~~~~~~~~~~g~D~v 221 (334)
T 3qwb_A 149 GDYVLLFAAAGGVGLILNQLLKMKG---AHTIAVASTDEKLKI-AKEYGAE---YLINASKEDILRQVLKFTNGKGVDAS 221 (334)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTT---CEEEEEESSHHHHHH-HHHTTCS---EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHH-HHHcCCc---EEEeCCCchHHHHHHHHhCCCCceEE
Confidence 5789999999999999999999999 899999987655543 3334322 234666655444444432 269999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|+++|.
T Consensus 222 id~~g~ 227 (334)
T 3qwb_A 222 FDSVGK 227 (334)
T ss_dssp EECCGG
T ss_pred EECCCh
Confidence 999883
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.59 E-value=7e-05 Score=62.40 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=45.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchh-hhhhcCCCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQ-LLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
|+|+||.|+|++|.+|+.+++.+.+... +++++. +|+.+... .-...+-. .. . ++.-.++++++++ ++|
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~--~eLv~~~d~~~~~~~G~d~gel~g-~~--~-gv~v~~dl~~ll~---~~D 75 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPD--ATLVGALDRTGSPQLGQDAGAFLG-KQ--T-GVALTDDIERVCA---EAD 75 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTT--EEEEEEBCCTTCTTTTSBTTTTTT-CC--C-SCBCBCCHHHHHH---HCS
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCC--CEEEEEEEecCcccccccHHHHhC-CC--C-CceecCCHHHHhc---CCC
Confidence 6788999999999999999999987643 787774 54432211 00000000 00 0 2222334666666 689
Q ss_pred EEEEcc
Q 022280 79 VVVNCA 84 (300)
Q Consensus 79 ~vih~a 84 (300)
+||++.
T Consensus 76 VVIDfT 81 (272)
T 4f3y_A 76 YLIDFT 81 (272)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999985
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00014 Score=63.00 Aligned_cols=76 Identities=22% Similarity=0.213 Sum_probs=52.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcC--CCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFG--QPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~d~v 80 (300)
+++|||+||+|.||...++.+...| .+|+++++++++.+.+.+ ++.. ...|.. .+..+.+.+..+ ++|+|
T Consensus 160 g~~VlV~Gasg~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~-~ga~---~v~~~~-~~~~~~v~~~~~~~g~Dvv 231 (342)
T 4eye_A 160 GETVLVLGAAGGIGTAAIQIAKGMG---AKVIAVVNRTAATEFVKS-VGAD---IVLPLE-EGWAKAVREATGGAGVDMV 231 (342)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHH-HTCS---EEEESS-TTHHHHHHHHTTTSCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHh-cCCc---EEecCc-hhHHHHHHHHhCCCCceEE
Confidence 5789999999999999999999999 899999998766554433 3322 123444 222233333322 69999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|+++|.
T Consensus 232 id~~g~ 237 (342)
T 4eye_A 232 VDPIGG 237 (342)
T ss_dssp EESCC-
T ss_pred EECCch
Confidence 999873
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.52 E-value=9.5e-05 Score=64.26 Aligned_cols=77 Identities=19% Similarity=0.147 Sum_probs=55.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh-cCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK-FGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~~~d~vi 81 (300)
+++|||+||+|.||..+++.+...| .+|+++++++++.+.+.+ ++.. ...|..+.+..+.+.+. -+++|+||
T Consensus 168 g~~VlV~Gg~g~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~-lGa~---~~~~~~~~~~~~~~~~~~~~g~Dvvi 240 (353)
T 4dup_A 168 GESVLIHGGTSGIGTTAIQLARAFG---AEVYATAGSTGKCEACER-LGAK---RGINYRSEDFAAVIKAETGQGVDIIL 240 (353)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHH-HTCS---EEEETTTSCHHHHHHHHHSSCEEEEE
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHh-cCCC---EEEeCCchHHHHHHHHHhCCCceEEE
Confidence 5789999999999999999999999 899999988666554433 2221 23465555433333322 23799999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
+++|.
T Consensus 241 d~~g~ 245 (353)
T 4dup_A 241 DMIGA 245 (353)
T ss_dssp ESCCG
T ss_pred ECCCH
Confidence 99873
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=7.6e-05 Score=63.24 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.+++++|+|+ |.+|+.++..|++.| . +|++..|+.++...+.+.++.... ++.+.+++. +...+.|+|
T Consensus 140 ~~~~vlVlGa-Gg~g~aia~~L~~~G---~~~V~v~nR~~~ka~~la~~~~~~~~----~~~~~~~~~---~~~~~aDiv 208 (297)
T 2egg_A 140 DGKRILVIGA-GGGARGIYFSLLSTA---AERIDMANRTVEKAERLVREGDERRS----AYFSLAEAE---TRLAEYDII 208 (297)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTT---CSEEEEECSSHHHHHHHHHHSCSSSC----CEECHHHHH---HTGGGCSEE
T ss_pred CCCEEEEECc-HHHHHHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHhhhccC----ceeeHHHHH---hhhccCCEE
Confidence 4689999996 789999999999999 6 899999987777777665433110 111212233 333489999
Q ss_pred EEccccc
Q 022280 81 VNCAALS 87 (300)
Q Consensus 81 ih~a~~~ 87 (300)
|++.+..
T Consensus 209 In~t~~~ 215 (297)
T 2egg_A 209 INTTSVG 215 (297)
T ss_dssp EECSCTT
T ss_pred EECCCCC
Confidence 9998754
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00014 Score=63.50 Aligned_cols=100 Identities=20% Similarity=0.161 Sum_probs=65.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh-c-CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK-F-GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~-~~~d~v 80 (300)
+++|||+||+|.||..+++.+...| ++|+++++++++.+.+. .++. . ...|..+.+ +.+.+.. . .++|+|
T Consensus 164 g~~VlV~Ga~G~iG~~~~q~a~~~G---a~Vi~~~~~~~~~~~~~-~~Ga--~-~~~~~~~~~-~~~~~~~~~~~g~D~v 235 (362)
T 2c0c_A 164 GKKVLVTAAAGGTGQFAMQLSKKAK---CHVIGTCSSDEKSAFLK-SLGC--D-RPINYKTEP-VGTVLKQEYPEGVDVV 235 (362)
T ss_dssp TCEEEETTTTBTTHHHHHHHHHHTT---CEEEEEESSHHHHHHHH-HTTC--S-EEEETTTSC-HHHHHHHHCTTCEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHH-HcCC--c-EEEecCChh-HHHHHHHhcCCCCCEE
Confidence 5789999999999999999999999 89999998865544433 3332 2 234555443 3333322 2 268999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecccc
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQV 131 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~ 131 (300)
|+++|.. . +...++.++..| +++.+++...
T Consensus 236 id~~g~~-----------~--------~~~~~~~l~~~G--~iv~~g~~~~ 265 (362)
T 2c0c_A 236 YESVGGA-----------M--------FDLAVDALATKG--RLIVIGFISG 265 (362)
T ss_dssp EECSCTH-----------H--------HHHHHHHEEEEE--EEEECCCGGG
T ss_pred EECCCHH-----------H--------HHHHHHHHhcCC--EEEEEeCCCC
Confidence 9998721 0 124555555443 8898887543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00026 Score=61.83 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+.+|||+|+ |.||...++.+...| .+|+++++++++.....++++.. ...|..+.+.+.+. .+++|+||
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~G---a~Vi~~~~~~~~~~~~~~~lGa~---~v~~~~~~~~~~~~---~~~~D~vi 256 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFG---SKVTVISTSPSKKEEALKNFGAD---SFLVSRDQEQMQAA---AGTLDGII 256 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCGGGHHHHHHTSCCS---EEEETTCHHHHHHT---TTCEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHhcCCc---eEEeccCHHHHHHh---hCCCCEEE
Confidence 4679999996 999999999999999 89999998876655544344322 23455554433332 24899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecc
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTD 129 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (300)
+++|.... +...++.++..| +++.+++.
T Consensus 257 d~~g~~~~------------------~~~~~~~l~~~G--~iv~~g~~ 284 (366)
T 1yqd_A 257 DTVSAVHP------------------LLPLFGLLKSHG--KLILVGAP 284 (366)
T ss_dssp ECCSSCCC------------------SHHHHHHEEEEE--EEEECCCC
T ss_pred ECCCcHHH------------------HHHHHHHHhcCC--EEEEEccC
Confidence 99874210 124455554433 88888764
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00068 Score=55.49 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=53.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh--cCCCCEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK--FGQPDVV 80 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~~~d~v 80 (300)
|+|.|.|++|-+|+.+++.+.+. + +++++...+.+....+... ... +..|++.++...+.++. ..+.++|
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~---~elva~~d~~~dl~~~~~~---~~D-vvIDfT~p~a~~~~~~~a~~~g~~~V 73 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADD---LTLSAELDAGDPLSLLTDG---NTE-VVIDFTHPDVVMGNLEFLIDNGIHAV 73 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTT---CEEEEEECTTCCTHHHHHT---TCC-EEEECSCTTTHHHHHHHHHHTTCEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---CEEEEEEccCCCHHHHhcc---CCc-EEEEccChHHHHHHHHHHHHcCCCEE
Confidence 58999999999999999999865 6 7888666554444444331 233 67899999876654432 1378888
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
+-..|
T Consensus 74 igTTG 78 (245)
T 1p9l_A 74 VGTTG 78 (245)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 87665
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0004 Score=57.86 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCC-ceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPH-SFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
.+++++|+|+ |.+|++++..|++.| . +|++..|+.++...+.+.+.. .+. ..++.+ +.. .+.|+
T Consensus 119 ~~k~~lvlGa-Gg~~~aia~~L~~~G---~~~v~i~~R~~~~a~~la~~~~~~~~~--~~~~~~---l~~-----~~~Di 184 (272)
T 3pwz_A 119 RNRRVLLLGA-GGAVRGALLPFLQAG---PSELVIANRDMAKALALRNELDHSRLR--ISRYEA---LEG-----QSFDI 184 (272)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTC---CSEEEEECSCHHHHHHHHHHHCCTTEE--EECSGG---GTT-----CCCSE
T ss_pred cCCEEEEECc-cHHHHHHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHhccCCee--EeeHHH---hcc-----cCCCE
Confidence 4689999996 789999999999999 5 899999987777776665432 122 122222 211 38999
Q ss_pred EEEcccc
Q 022280 80 VVNCAAL 86 (300)
Q Consensus 80 vih~a~~ 86 (300)
||++-..
T Consensus 185 vInaTp~ 191 (272)
T 3pwz_A 185 VVNATSA 191 (272)
T ss_dssp EEECSSG
T ss_pred EEECCCC
Confidence 9998543
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=3.7e-05 Score=64.24 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhh-ccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~-~g~~~~~v~~~~r~ 39 (300)
++|+|.|+|++|.+|+.+++.+++ .| +++++..++
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~---~elva~~d~ 39 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEG---VQLGAALER 39 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTT---EECCCEECC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCC---CEEEEEEec
Confidence 357999999999999999999875 55 777755443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00023 Score=61.39 Aligned_cols=76 Identities=20% Similarity=0.117 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|||+|| |.+|..+++.+...| .+|+++++++++.+.+. .++. . ...|..+.+..+.+.+..+++|+||
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~-~lGa--~-~~~d~~~~~~~~~~~~~~~~~d~vi 235 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMG---LNVVAVDIGDEKLELAK-ELGA--D-LVVNPLKEDAAKFMKEKVGGVHAAV 235 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTT---CEEEEECSCHHHHHHHH-HTTC--S-EEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHH-HCCC--C-EEecCCCccHHHHHHHHhCCCCEEE
Confidence 3579999999 779999999999999 89999998866555443 3332 2 2356665443333332225899999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
+++|
T Consensus 236 d~~g 239 (339)
T 1rjw_A 236 VTAV 239 (339)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9987
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00021 Score=58.90 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
+++|+|.| .|.+|+++++.|+..|. -++++.+++.
T Consensus 31 ~~~VlVvG-~Gg~G~~va~~La~~Gv--~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVG-LGGLGCAASQYLASAGV--GNLTLLDFDT 65 (249)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTC--SEEEEECCCB
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHcCC--CeEEEEcCCC
Confidence 47899999 68999999999999993 2788888875
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00027 Score=61.21 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=53.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVVV 81 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~vi 81 (300)
++++|+||+|.||...++.+...| .+|+++++++++.+.+.+ ++. . ...|..+.+..+.+.+.. .++|+||
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~~~-~Ga--~-~~~~~~~~~~~~~v~~~~~~~g~D~vi 238 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEG---FRPIVTVRRDEQIALLKD-IGA--A-HVLNEKAPDFEATLREVMKAEQPRIFL 238 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHT---CEEEEEESCGGGHHHHHH-HTC--S-EEEETTSTTHHHHHHHHHHHHCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH-cCC--C-EEEECCcHHHHHHHHHHhcCCCCcEEE
Confidence 689999999999999999999999 899999988766554433 332 1 234555544333333221 2799999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
+++|.
T Consensus 239 d~~g~ 243 (349)
T 3pi7_A 239 DAVTG 243 (349)
T ss_dssp ESSCH
T ss_pred ECCCC
Confidence 99873
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00026 Score=61.35 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH 37 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~ 37 (300)
++++|.|.||||++|+.+++.|.+... .+++++.
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~--~elvai~ 36 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPY--LELVKVS 36 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSS--EEEEEEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCC--cEEEEEe
Confidence 467999999999999999999987643 6777764
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=7.1e-05 Score=64.05 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh----hhcCC--CceeEEEeecCCchhHHHHHHhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL----LDALP--HSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~----~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
.+++|.|+|+ |.+|+.++..|+..|.- -++++.++++++.... .+..+ ..+... .| +. +.+.
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~-~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~-~~--~~-------~a~~ 75 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIA-QEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY-SA--EY-------SDAK 75 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE-EC--CG-------GGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCC-CeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEE-EC--cH-------HHhc
Confidence 4679999995 99999999999999831 2788888875443321 11110 122211 11 11 1233
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
+.|+||++||...... ....+.++.|+.-.. .+.+.+.+.... .++.+|
T Consensus 76 ~aDiVvi~ag~~~kpG--~tR~dL~~~N~~I~~-~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 76 DADLVVITAGAPQKPG--ETRLDLVNKNLKILK-SIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp TCSEEEECCCCC------------------CHH-HHHHHHHTTTCCSEEEECS
T ss_pred CCCEEEECCCCCCCCC--chHHHHHHHHHHHHH-HHHHHHHhcCCceEEEEcc
Confidence 8999999999643221 123455777877664 888888876654 455555
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00014 Score=63.27 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=28.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
+++|.|.||||++|+.+++.|+++.. ++|+++.+
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~--~ev~~i~~ 41 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPM--FELTALAA 41 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSS--EEEEEEEE
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCC--CEEEEEEc
Confidence 46999999999999999999988753 78877754
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00063 Score=58.21 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=69.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhcC---CCceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDAL---PHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
+++|.|+|+ |.+|+.++..|+..|.- .++++.++++++... +.+.. +..+..... +. +.+.
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~-~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~---~~-------~a~~ 72 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGIT-DELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYG---TY-------EDCK 72 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEE---CG-------GGGT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCC-ceEEEEecchHHHHHHHHHHHhccccccCCeEEEeC---cH-------HHhC
Confidence 479999995 99999999999999831 288988887554433 22211 112232211 11 1223
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
+.|+||.+||...... ....+.+..|+.... .+++.+.+.... .++.+|
T Consensus 73 ~aDvVvi~ag~p~kpG--~~R~dL~~~N~~Iv~-~i~~~I~~~~p~a~vlvvt 122 (326)
T 3pqe_A 73 DADIVCICAGANQKPG--ETRLELVEKNLKIFK-GIVSEVMASGFDGIFLVAT 122 (326)
T ss_dssp TCSEEEECCSCCCCTT--CCHHHHHHHHHHHHH-HHHHHHHHTTCCSEEEECS
T ss_pred CCCEEEEecccCCCCC--ccHHHHHHHHHHHHH-HHHHHHHHhcCCeEEEEcC
Confidence 8999999998643221 123456777776653 788888776554 555555
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00012 Score=62.35 Aligned_cols=111 Identities=15% Similarity=0.175 Sum_probs=64.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCC-------ceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH-------SFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
+|+|.|+|| |.+|+.++..|+..|+ ++|++.++++++.......+.+ ... +.. -+| + +.+.
T Consensus 2 ~~kI~VIGa-G~vG~~~a~~la~~g~--~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~-i~~-t~d---~----~a~~ 69 (309)
T 1ur5_A 2 RKKISIIGA-GFVGSTTAHWLAAKEL--GDIVLLDIVEGVPQGKALDLYEASPIEGFDVR-VTG-TNN---Y----ADTA 69 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCC-EEE-ESC---G----GGGT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--CeEEEEeCCccHHHHHHHhHHHhHhhcCCCeE-EEE-CCC---H----HHHC
Confidence 579999998 9999999999999993 3888888876554432211111 111 111 022 1 1233
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
+.|+||.+++....... .-......|+.... .+++.+.+.....++.+.|
T Consensus 70 ~aD~Vi~a~g~p~~~g~--~r~dl~~~n~~i~~-~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 70 NSDVIVVTSGAPRKPGM--SREDLIKVNADITR-ACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp TCSEEEECCCC----------CHHHHHHHHHHH-HHHHHHGGGCTTCEEEECC
T ss_pred CCCEEEEcCCCCCCCCC--CHHHHHHHHHHHHH-HHHHHHHhhCCCeEEEEcC
Confidence 89999999986432211 11233455555443 7777777766555554443
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.27 E-value=4.1e-05 Score=64.57 Aligned_cols=76 Identities=9% Similarity=0.195 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCc---eeEEEeecCCchhHHHHHHhcCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHS---FVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
.+++++|||++ .+|+++++.|++.| +|++..|+.++...+.+.+... ...+..|+.+. .+.++++|
T Consensus 127 ~~k~vlV~GaG-giG~aia~~L~~~G----~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~------~~~~~~~D 195 (287)
T 1nvt_A 127 KDKNIVIYGAG-GAARAVAFELAKDN----NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGL------DVDLDGVD 195 (287)
T ss_dssp CSCEEEEECCS-HHHHHHHHHHTSSS----EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECT------TCCCTTCC
T ss_pred CCCEEEEECch-HHHHHHHHHHHHCC----CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeH------HHhhCCCC
Confidence 56899999975 99999999999998 4777888866555554332110 00123344442 23345899
Q ss_pred EEEEcccccC
Q 022280 79 VVVNCAALSV 88 (300)
Q Consensus 79 ~vih~a~~~~ 88 (300)
+||++++...
T Consensus 196 ilVn~ag~~~ 205 (287)
T 1nvt_A 196 IIINATPIGM 205 (287)
T ss_dssp EEEECSCTTC
T ss_pred EEEECCCCCC
Confidence 9999998653
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00029 Score=61.51 Aligned_cols=73 Identities=19% Similarity=0.354 Sum_probs=51.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC---CchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST---PLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~---~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
+++|||+|| |.||..+++.+...| .+|+++++++ ++.+ +..+++ ...+ | .+ +..+.+.+..+++|+
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~G---a~Vi~~~~~~~~~~~~~-~~~~~g--a~~v--~-~~-~~~~~~~~~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYG---LEVWMANRREPTEVEQT-VIEETK--TNYY--N-SS-NGYDKLKDSVGKFDV 249 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHT---CEEEEEESSCCCHHHHH-HHHHHT--CEEE--E-CT-TCSHHHHHHHCCEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEeCCccchHHHH-HHHHhC--Ccee--c-hH-HHHHHHHHhCCCCCE
Confidence 789999999 999999999999999 8999999886 4443 223332 2323 6 54 322222221147999
Q ss_pred EEEcccc
Q 022280 80 VVNCAAL 86 (300)
Q Consensus 80 vih~a~~ 86 (300)
||+++|.
T Consensus 250 vid~~g~ 256 (366)
T 2cdc_A 250 IIDATGA 256 (366)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999873
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00033 Score=61.42 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|+|+ |.||+.+++.+...| .+|++.++++++...+.+.++..+ ..+..+.+++.+.+. +.|+||
T Consensus 167 ~g~~V~ViG~-G~iG~~~a~~a~~~G---a~V~~~d~~~~~l~~~~~~~g~~~---~~~~~~~~~l~~~l~---~aDvVi 236 (377)
T 2vhw_A 167 EPADVVVIGA-GTAGYNAARIANGMG---ATVTVLDINIDKLRQLDAEFCGRI---HTRYSSAYELEGAVK---RADLVI 236 (377)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTTSS---EEEECCHHHHHHHHH---HCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHhcCCee---EeccCCHHHHHHHHc---CCCEEE
Confidence 4689999997 999999999999999 899999998665554444333322 233344455666555 799999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.+++.
T Consensus 237 ~~~~~ 241 (377)
T 2vhw_A 237 GAVLV 241 (377)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 98764
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=60.96 Aligned_cols=111 Identities=20% Similarity=0.208 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcC-------CCceeEEEeecCCchhHHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDAL-------PHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
|.+++|.|+| +|.+|+.++..|+..| . +|++.++++++.......+ +.... +.+. .+. +
T Consensus 3 m~~~kI~iiG-aG~vG~~~a~~l~~~~---~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~-v~~t-~d~-------~ 69 (321)
T 3p7m_A 3 MARKKITLVG-AGNIGGTLAHLALIKQ---LGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFK-VRGT-NDY-------K 69 (321)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHTT---CCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCC-EEEE-SCG-------G
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCC---CceEEEEeCChHHHHHHHHHHHhhhhhcCCCcE-EEEc-CCH-------H
Confidence 6678999999 5999999999999998 6 8999999876543221111 11122 2211 122 1
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
.+.+.|+||.+||...... ....+.+..|+.... .+++.+.+.... .++.+|
T Consensus 70 a~~~aDvVIi~ag~p~k~G--~~R~dl~~~N~~i~~-~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 70 DLENSDVVIVTAGVPRKPG--MSRDDLLGINIKVMQ-TVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp GGTTCSEEEECCSCCCCTT--CCHHHHHHHHHHHHH-HHHHHHHHHCTTCEEEECC
T ss_pred HHCCCCEEEEcCCcCCCCC--CCHHHHHHHhHHHHH-HHHHHHHHHCCCcEEEEec
Confidence 2338999999998643221 133455677776663 788888776654 555555
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0003 Score=59.63 Aligned_cols=72 Identities=22% Similarity=0.206 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~d~v 80 (300)
.+.+|||+||+|.+|..+++.+...| .+|+++++++++.+.+. +++. . ...|..+ .+ +.+ ..+++|+|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~-~~ga--~-~~~~~~~~~~-~~~---~~~~~d~v 193 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMG---LRVLAAASRPEKLALPL-ALGA--E-EAATYAEVPE-RAK---AWGGLDLV 193 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTT---CEEEEEESSGGGSHHHH-HTTC--S-EEEEGGGHHH-HHH---HTTSEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHH-hcCC--C-EEEECCcchh-HHH---HhcCceEE
Confidence 36799999999999999999999999 89999999866655443 3332 2 2245444 22 222 22489999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|+ +|
T Consensus 194 id-~g 197 (302)
T 1iz0_A 194 LE-VR 197 (302)
T ss_dssp EE-CS
T ss_pred EE-CC
Confidence 99 87
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0003 Score=61.30 Aligned_cols=74 Identities=11% Similarity=0.193 Sum_probs=52.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
.++|+|+|+ |.+|+.+++.|...| .+|++.+|++++...+.+.....+. .+..+.+++.+.+. +.|+||+
T Consensus 167 ~~~VlViGa-GgvG~~aa~~a~~~G---a~V~v~dr~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~DvVI~ 236 (361)
T 1pjc_A 167 PGKVVILGG-GVVGTEAAKMAVGLG---AQVQIFDINVERLSYLETLFGSRVE---LLYSNSAEIETAVA---EADLLIG 236 (361)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHGGGSE---EEECCHHHHHHHHH---TCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHhhCceeE---eeeCCHHHHHHHHc---CCCEEEE
Confidence 478999998 999999999999999 8999999987665554433222221 12233344554444 8999999
Q ss_pred cccc
Q 022280 83 CAAL 86 (300)
Q Consensus 83 ~a~~ 86 (300)
+++.
T Consensus 237 ~~~~ 240 (361)
T 1pjc_A 237 AVLV 240 (361)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 9875
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=60.08 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++++|+|+ |.+|++++..|++.| .+|++..|+.++...+.+.++........|+. ++. + +++|+||
T Consensus 118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G---~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~---~~~---~--~~~DivI 185 (272)
T 1p77_A 118 PNQHVLILGA-GGATKGVLLPLLQAQ---QNIVLANRTFSKTKELAERFQPYGNIQAVSMD---SIP---L--QTYDLVI 185 (272)
T ss_dssp TTCEEEEECC-SHHHHTTHHHHHHTT---CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG---GCC---C--SCCSEEE
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHccccCCeEEeeHH---Hhc---c--CCCCEEE
Confidence 4689999997 789999999999999 89999999877666665443221011122331 111 1 3899999
Q ss_pred Eccccc
Q 022280 82 NCAALS 87 (300)
Q Consensus 82 h~a~~~ 87 (300)
++.+..
T Consensus 186 n~t~~~ 191 (272)
T 1p77_A 186 NATSAG 191 (272)
T ss_dssp ECCCC-
T ss_pred ECCCCC
Confidence 998754
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00013 Score=62.36 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhh----hhhc---CCCceeEEEeecCCchhHHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQL----LLDA---LPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~----~~~~---~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
|++++|.|+|+ |.+|+.++..|+..| . +|++.++++++... +.+. .+.... +.+. .|. +
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~---~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~-v~~t-~d~-------~ 71 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKE---LGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAK-FTGA-NDY-------A 71 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTT---CCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCC-EEEE-SSG-------G
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCC---CCeEEEEeCCchhHHHHHHHHhchhhhcCCCCE-EEEe-CCH-------H
Confidence 56789999997 999999999999999 6 89999998765432 1111 011112 1210 121 1
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
.+.+.|+||.++|...... ....+.+..|+.... .+++.+.+.... .++.+|
T Consensus 72 a~~~aDiVIiaag~p~k~G--~~R~dl~~~N~~i~~-~i~~~i~~~~p~a~iivvt 124 (324)
T 3gvi_A 72 AIEGADVVIVTAGVPRKPG--MSRDDLLGINLKVME-QVGAGIKKYAPEAFVICIT 124 (324)
T ss_dssp GGTTCSEEEECCSCCCC-------CHHHHHHHHHHH-HHHHHHHHHCTTCEEEECC
T ss_pred HHCCCCEEEEccCcCCCCC--CCHHHHHHhhHHHHH-HHHHHHHHHCCCeEEEecC
Confidence 2238999999998643221 123345666766553 777777776554 556655
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00061 Score=59.09 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=26.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeee
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA 35 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~ 35 (300)
+++|.|.||||++|+.|++.|.++++...++..
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~ 34 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRY 34 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEE
Confidence 579999999999999999999987643234443
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00066 Score=58.29 Aligned_cols=98 Identities=22% Similarity=0.255 Sum_probs=57.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC---Cchhhhhh---cCCC--ceeEEEeecCCchhHHHHHHhc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST---PLPQLLLD---ALPH--SFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~---~~~~~~~~---~~~~--~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
|++|.|.||||++|+.|++.|.+.-+ +++..+..+. ..-..+.+ .+.. ...+.. +.+.++ +.
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~--~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~--~~~~~~---~~--- 73 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPH--MNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQP--MSDISE---FS--- 73 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTT--EEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEE--ESSGGG---TC---
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCC--CcEEEEEecCchhhcCCchHHhCccccCccceeEec--cCCHHH---Hh---
Confidence 57999999999999999999988532 7777665443 22121211 1111 122111 102211 11
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
.++|+||-|.+.... ..++..+.+.|+ ++|=.|+..
T Consensus 74 ~~~Dvvf~a~p~~~s-------------------~~~~~~~~~~g~-~vIDlSa~f 109 (337)
T 3dr3_A 74 PGVDVVFLATAHEVS-------------------HDLAPQFLEAGC-VVFDLSGAF 109 (337)
T ss_dssp TTCSEEEECSCHHHH-------------------HHHHHHHHHTTC-EEEECSSTT
T ss_pred cCCCEEEECCChHHH-------------------HHHHHHHHHCCC-EEEEcCCcc
Confidence 389999988653210 256666667787 788888753
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00038 Score=59.12 Aligned_cols=78 Identities=12% Similarity=0.133 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCC---CCchhhhhhcCCC--ceeEEEeecCCchhHHHHHHhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHS---TPLPQLLLDALPH--SFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~---~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
.+++++|+|+ |.+|++++..|++.| . +|++..|+ .++...+.+.+.. .......++.+.+.+.+.+.
T Consensus 147 ~gk~~lVlGA-GGaaraia~~L~~~G---~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~--- 219 (312)
T 3t4e_A 147 RGKTMVLLGA-GGAATAIGAQAAIEG---IKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALA--- 219 (312)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT---CSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH---
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHcC---CCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhcc---
Confidence 4689999996 899999999999999 6 79999998 4445555443311 11222334444322233344
Q ss_pred CCCEEEEcccc
Q 022280 76 QPDVVVNCAAL 86 (300)
Q Consensus 76 ~~d~vih~a~~ 86 (300)
..|+|||+-..
T Consensus 220 ~~DiIINaTp~ 230 (312)
T 3t4e_A 220 SADILTNGTKV 230 (312)
T ss_dssp HCSEEEECSST
T ss_pred CceEEEECCcC
Confidence 78999998554
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00032 Score=63.16 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+.|+|+|.| .|-+|++|++.|.++| ++|++.+++++....+.+.+ .+..+.+|.++++.++++-- .+.|.++
T Consensus 2 ~~M~iiI~G-~G~vG~~la~~L~~~~---~~v~vId~d~~~~~~~~~~~--~~~~i~Gd~~~~~~L~~Agi--~~ad~~i 73 (461)
T 4g65_A 2 NAMKIIILG-AGQVGGTLAENLVGEN---NDITIVDKDGDRLRELQDKY--DLRVVNGHASHPDVLHEAGA--QDADMLV 73 (461)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHTCSTT---EEEEEEESCHHHHHHHHHHS--SCEEEESCTTCHHHHHHHTT--TTCSEEE
T ss_pred CcCEEEEEC-CCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHhc--CcEEEEEcCCCHHHHHhcCC--CcCCEEE
Confidence 468999999 6899999999999999 89999999877777666654 35568999999887766532 3789888
Q ss_pred Ec
Q 022280 82 NC 83 (300)
Q Consensus 82 h~ 83 (300)
-+
T Consensus 74 a~ 75 (461)
T 4g65_A 74 AV 75 (461)
T ss_dssp EC
T ss_pred EE
Confidence 64
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0008 Score=57.88 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=57.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
++|++|.|.||||++|+.+++.|.+++...++++++..+.+.-..+. -.+..+.+ .|+ +++. ++ ++|+|
T Consensus 1 ~~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~-~~~~~i~~--~~~-~~~~----~~---~vDvV 69 (336)
T 2r00_A 1 SQQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR-FNGKTVRV--QNV-EEFD----WS---QVHIA 69 (336)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE-ETTEEEEE--EEG-GGCC----GG---GCSEE
T ss_pred CCccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee-ecCceeEE--ecC-ChHH----hc---CCCEE
Confidence 35789999999999999999999987421167766653211100000 00111221 222 1111 12 79999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
|.|.+... + ...+..+.+.|+ ++|-.|+..
T Consensus 70 f~a~g~~~------------------s-~~~a~~~~~~G~-~vId~s~~~ 99 (336)
T 2r00_A 70 LFSAGGEL------------------S-AKWAPIAAEAGV-VVIDNTSHF 99 (336)
T ss_dssp EECSCHHH------------------H-HHHHHHHHHTTC-EEEECSSTT
T ss_pred EECCCchH------------------H-HHHHHHHHHcCC-EEEEcCCcc
Confidence 99876321 0 366666677787 778888763
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00095 Score=58.40 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=51.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+.+|||+||+|.||...++.+...| .+|+++. ++++.+ +..+++.. ...|..+.+..+.+ ....++|+||+
T Consensus 184 g~~VlV~Ga~G~vG~~~~qla~~~G---a~Vi~~~-~~~~~~-~~~~lGa~---~v~~~~~~~~~~~~-~~~~g~D~vid 254 (375)
T 2vn8_A 184 GKRVLILGASGGVGTFAIQVMKAWD---AHVTAVC-SQDASE-LVRKLGAD---DVIDYKSGSVEEQL-KSLKPFDFILD 254 (375)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE-CGGGHH-HHHHTTCS---EEEETTSSCHHHHH-HTSCCBSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEe-ChHHHH-HHHHcCCC---EEEECCchHHHHHH-hhcCCCCEEEE
Confidence 5789999999999999999999999 8888887 434433 33444322 23465554433333 33358999999
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
++|
T Consensus 255 ~~g 257 (375)
T 2vn8_A 255 NVG 257 (375)
T ss_dssp SSC
T ss_pred CCC
Confidence 987
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0013 Score=56.10 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=63.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeE-EEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVF-FDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++||.|+|+ |++|+.++-.|+..|.- -+|++.+.++++.......+.+...+ ....+.. ++ .+.+.+.|+||
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~-~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~~----~~a~~~aDvVi 79 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTA-NELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA-GD----YSDVKDCDVIV 79 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCS-SEEEEECCC---CCHHHHHHTTSCCCTTCEEEC---C----GGGGTTCSEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCC-CEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE-CC----HHHhCCCCEEE
Confidence 468999997 99999999999999831 28999998865543222111111110 0011111 11 12234899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEe
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHL 126 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~ 126 (300)
.+++...... ..-.+....|+.... .+++.+.+.... .++.+
T Consensus 80 i~~g~p~k~g--~~r~dl~~~n~~i~~-~i~~~i~~~~p~a~viv~ 122 (318)
T 1y6j_A 80 VTAGANRKPG--ETRLDLAKKNVMIAK-EVTQNIMKYYNHGVILVV 122 (318)
T ss_dssp ECCCC--------CHHHHHHHHHHHHH-HHHHHHHHHCCSCEEEEC
T ss_pred EcCCCCCCCC--cCHHHHHHhhHHHHH-HHHHHHHHhCCCcEEEEe
Confidence 9998643211 123345667766654 778887776554 44443
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00055 Score=59.17 Aligned_cols=73 Identities=23% Similarity=0.134 Sum_probs=50.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+|||+||+|.||...++.+...| .+|+++ +++++.+.+ .+++. . . .| .+.+..+.+.+.. .++|+|
T Consensus 151 g~~VlV~Ga~g~iG~~~~q~a~~~G---a~Vi~~-~~~~~~~~~-~~lGa--~-~-i~-~~~~~~~~~~~~~~~~g~D~v 220 (343)
T 3gaz_A 151 GQTVLIQGGGGGVGHVAIQIALARG---ARVFAT-ARGSDLEYV-RDLGA--T-P-ID-ASREPEDYAAEHTAGQGFDLV 220 (343)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEE-ECHHHHHHH-HHHTS--E-E-EE-TTSCHHHHHHHHHTTSCEEEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC---CEEEEE-eCHHHHHHH-HHcCC--C-E-ec-cCCCHHHHHHHHhcCCCceEE
Confidence 5789999999999999999999999 889988 665444433 33332 2 2 45 4333223333322 279999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|+++|
T Consensus 221 id~~g 225 (343)
T 3gaz_A 221 YDTLG 225 (343)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99987
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00033 Score=62.12 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=58.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+++|+|.| .|-+|+.+++.|.+.| ++|++.+++++....+... ++..+.+|.++++.++.+ ...+.|+||-
T Consensus 4 ~~~viIiG-~Gr~G~~va~~L~~~g---~~vvvId~d~~~v~~~~~~---g~~vi~GDat~~~~L~~a--gi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAG-FGRFGQITGRLLLSSG---VKMVVLDHDPDHIETLRKF---GMKVFYGDATRMDLLESA--GAAKAEVLIN 74 (413)
T ss_dssp CCSEEEEC-CSHHHHHHHHHHHHTT---CCEEEEECCHHHHHHHHHT---TCCCEESCTTCHHHHHHT--TTTTCSEEEE
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHhC---CCeEEEcCCCCHHHHHhc--CCCccCEEEE
Confidence 47899999 5999999999999999 8999999987766655432 455689999998766554 2237899988
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+..
T Consensus 75 ~~~ 77 (413)
T 3l9w_A 75 AID 77 (413)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00069 Score=58.64 Aligned_cols=75 Identities=17% Similarity=0.084 Sum_probs=51.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~ 79 (300)
+.+|||+|+ |.+|...++.+...| . +|+++++++++.+.+. +++. . ...|..+.+..+.+.+.. .++|+
T Consensus 168 g~~VlV~Ga-G~vG~~~~q~a~~~G---a~~Vi~~~~~~~~~~~~~-~~Ga--~-~~~~~~~~~~~~~v~~~~~g~g~D~ 239 (348)
T 2d8a_A 168 GKSVLITGA-GPLGLLGIAVAKASG---AYPVIVSEPSDFRRELAK-KVGA--D-YVINPFEEDVVKEVMDITDGNGVDV 239 (348)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTT---CCSEEEECSCHHHHHHHH-HHTC--S-EEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CCEEEEECCCHHHHHHHH-HhCC--C-EEECCCCcCHHHHHHHHcCCCCCCE
Confidence 578999999 999999999999999 7 8999998865544333 3222 2 234555544333333322 26999
Q ss_pred EEEccc
Q 022280 80 VVNCAA 85 (300)
Q Consensus 80 vih~a~ 85 (300)
||+++|
T Consensus 240 vid~~g 245 (348)
T 2d8a_A 240 FLEFSG 245 (348)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 999987
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00042 Score=55.91 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=48.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeee-cCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA-THHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~-~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|+||+|.|.| +|.+|+.+++.|++.| ++|++ .+|+++....+.+..+... .. .+ .+..+ ..|+
T Consensus 21 m~mmkI~IIG-~G~mG~~la~~l~~~g---~~V~~v~~r~~~~~~~l~~~~g~~~---~~--~~----~~~~~---~aDv 84 (220)
T 4huj_A 21 QSMTTYAIIG-AGAIGSALAERFTAAQ---IPAIIANSRGPASLSSVTDRFGASV---KA--VE----LKDAL---QADV 84 (220)
T ss_dssp GGSCCEEEEE-CHHHHHHHHHHHHHTT---CCEEEECTTCGGGGHHHHHHHTTTE---EE--CC----HHHHT---TSSE
T ss_pred hcCCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEEECCCHHHHHHHHHHhCCCc---cc--Ch----HHHHh---cCCE
Confidence 4578999999 9999999999999999 88888 8888777666554432211 11 11 22233 7899
Q ss_pred EEEcc
Q 022280 80 VVNCA 84 (300)
Q Consensus 80 vih~a 84 (300)
||-+.
T Consensus 85 Vilav 89 (220)
T 4huj_A 85 VILAV 89 (220)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99875
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00049 Score=59.13 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=63.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeE--EEeecCCchhHHHHHHhcCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVF--FDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~--~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
+|+|.|+|| |.+|+.++..|+..| + +|++.+++++........+.+.... ....+.-..++++.++ +.|+
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g---~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~---~aDi 81 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRE---LADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT---GADC 81 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHT---CCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT---TCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhC---CCCE
Confidence 368999997 999999999999999 5 8999998876554421111000000 0001100122443444 8999
Q ss_pred EEEcccccCcccccc---ChhhhhhcccccchHHHHHhhhhccCCeEE
Q 022280 80 VVNCAALSVPRVCEN---DPDSAMSINVPSSLVNWLSSFTENKENLLI 124 (300)
Q Consensus 80 vih~a~~~~~~~~~~---~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v 124 (300)
||-+++.......+. ........|+.-. ..+++.+.+....-++
T Consensus 82 Vi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~v 128 (331)
T 1pzg_A 82 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKII-REIGQNIKKYCPKTFI 128 (331)
T ss_dssp EEECCSCSSCTTCCGGGCCGGGGHHHHHHHH-HHHHHHHHHHCTTCEE
T ss_pred EEEccCCCCCCCcccCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCcEE
Confidence 999997543211100 1223344444444 3677777665444333
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00096 Score=57.68 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~v 80 (300)
.+.+|||+||+|.+|...++.+...| .+|+++++++++.+.+.+ ++.. ...|..+ +..+.+.+.. +++|+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~~~-lGa~---~vi~~~~-~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG---LRVITTASRNETIEWTKK-MGAD---IVLNHKE-SLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEECCSHHHHHHHHH-HTCS---EEECTTS-CHHHHHHHHTCCCEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHh-cCCc---EEEECCc-cHHHHHHHhCCCCccEE
Confidence 36799999999999999999999999 899999987655544433 3221 2233332 2222222221 369999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|+++|
T Consensus 222 ~d~~g 226 (346)
T 3fbg_A 222 FCTFN 226 (346)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99987
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0018 Score=55.02 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=68.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhh-h--hcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLL-L--DALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~-~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|||.|+||+|.+|+.++..|..+ +.- .++++.+..+ ..... . ...+.... +.+=.++ + ..+.++ +.|+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~-~el~L~Di~~-~~~G~a~Dl~~~~~~~~-v~~~~~~-~-~~~~~~---~aDi 72 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSG-SELSLYDIAP-VTPGVAVDLSHIPTAVK-IKGFSGE-D-ATPALE---GADV 72 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT-EEEEEECSST-THHHHHHHHHTSCSSEE-EEEECSS-C-CHHHHT---TCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCC-ceEEEEecCC-CchhHHHHhhCCCCCce-EEEecCC-C-cHHHhC---CCCE
Confidence 68999999999999999999876 432 5788888765 22211 1 11111111 1110011 1 123344 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
||.+||....+. ....+.++.|+.... .+.+.+.+.... .++.+|
T Consensus 73 vii~ag~~rkpG--~~R~dll~~N~~I~~-~i~~~i~~~~p~a~vlvvt 118 (312)
T 3hhp_A 73 VLISAGVARKPG--MDRSDLFNVNAGIVK-NLVQQVAKTCPKACIGIIT 118 (312)
T ss_dssp EEECCSCSCCTT--CCHHHHHHHHHHHHH-HHHHHHHHHCTTSEEEECS
T ss_pred EEEeCCCCCCCC--CCHHHHHHHHHHHHH-HHHHHHHHHCCCcEEEEec
Confidence 999998653221 234567788877664 788888776554 566665
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00024 Score=63.69 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL 42 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~ 42 (300)
.+++++|||++ .||+.+++.|...| .+|++.++++..
T Consensus 264 ~GKtVvVtGaG-gIG~aiA~~Laa~G---A~Viv~D~~~~~ 300 (488)
T 3ond_A 264 AGKVAVVAGYG-DVGKGCAAALKQAG---ARVIVTEIDPIC 300 (488)
T ss_dssp TTCEEEEECCS-HHHHHHHHHHHHTT---CEEEEECSCHHH
T ss_pred cCCEEEEECCC-HHHHHHHHHHHHCC---CEEEEEcCCHHH
Confidence 57899999965 99999999999999 899999887543
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0013 Score=57.11 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=54.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCC-----------ceeEEEeecCCchhHHHHH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH-----------SFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~~ 71 (300)
+++|.|.||||++|+.|++.|.+.-. .++..+..+...-..+.+.++. ...+ -+ .+.++
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~--~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v--~~-~~~~~----- 76 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPY--IKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEI--KP-TDPKL----- 76 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSS--EEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBC--EE-CCGGG-----
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC--ceEEEEECchhcCCChhHhcccccccccccccccceE--Ee-CCHHH-----
Confidence 35899999999999999998776532 5665543322211112111110 1110 11 12221
Q ss_pred HhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 72 LKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 72 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
+.++|+||.|.+.... ..++..+.+.|+ ++|=.|+..
T Consensus 77 --~~~vDvvf~a~p~~~s-------------------~~~a~~~~~~G~-~vIDlSa~~ 113 (359)
T 4dpl_A 77 --MDDVDIIFSPLPQGAA-------------------GPVEEQFAKEGF-PVISNSPDH 113 (359)
T ss_dssp --CTTCCEEEECCCTTTH-------------------HHHHHHHHHTTC-EEEECSSTT
T ss_pred --hcCCCEEEECCChHHH-------------------HHHHHHHHHCCC-EEEEcCCCc
Confidence 2389999998763211 256666666787 778888754
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0013 Score=57.11 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=54.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCC-----------ceeEEEeecCCchhHHHHH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH-----------SFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~~ 71 (300)
+++|.|.||||++|+.|++.|.+.-. .++..+..+...-..+.+.++. ...+ -+ .+.++
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~--~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v--~~-~~~~~----- 76 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPY--IKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEI--KP-TDPKL----- 76 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSS--EEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBC--EE-CCGGG-----
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC--ceEEEEECchhcCCChhHhcccccccccccccccceE--Ee-CCHHH-----
Confidence 35899999999999999998776532 5665543322211112111110 1110 11 12221
Q ss_pred HhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 72 LKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 72 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
+.++|+||.|.+.... ..++..+.+.|+ ++|=.|+..
T Consensus 77 --~~~vDvvf~a~p~~~s-------------------~~~a~~~~~~G~-~vIDlSa~~ 113 (359)
T 4dpk_A 77 --MDDVDIIFSPLPQGAA-------------------GPVEEQFAKEGF-PVISNSPDH 113 (359)
T ss_dssp --CTTCCEEEECCCTTTH-------------------HHHHHHHHHTTC-EEEECSSTT
T ss_pred --hcCCCEEEECCChHHH-------------------HHHHHHHHHCCC-EEEEcCCCc
Confidence 2389999998763211 256666666787 778888754
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00079 Score=59.54 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.+++|+|.|+ |.+|+.+++.|...| . +|++..|++++...+...++.. ..+.+++.+.+. +.|+|
T Consensus 166 ~g~~VlIiGa-G~iG~~~a~~l~~~G---~~~V~v~~r~~~ra~~la~~~g~~-------~~~~~~l~~~l~---~aDvV 231 (404)
T 1gpj_A 166 HDKTVLVVGA-GEMGKTVAKSLVDRG---VRAVLVANRTYERAVELARDLGGE-------AVRFDELVDHLA---RSDVV 231 (404)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHC---CSEEEEECSSHHHHHHHHHHHTCE-------ECCGGGHHHHHH---TCSEE
T ss_pred cCCEEEEECh-HHHHHHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHcCCc-------eecHHhHHHHhc---CCCEE
Confidence 4789999996 999999999999999 6 8999999866554454443321 112234555555 89999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|.+.+
T Consensus 232 i~at~ 236 (404)
T 1gpj_A 232 VSATA 236 (404)
T ss_dssp EECCS
T ss_pred EEccC
Confidence 99965
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00044 Score=57.91 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCC--ceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPH--SFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
.+++++|+|+ |.+|++++..|++.| . +|++..|+.++...+.+.+.. .+. ..++.+. . .+.|
T Consensus 125 ~~k~vlvlGa-Gg~g~aia~~L~~~G---~~~v~v~~R~~~~a~~la~~~~~~~~~~--~~~~~~l---~------~~aD 189 (281)
T 3o8q_A 125 KGATILLIGA-GGAARGVLKPLLDQQ---PASITVTNRTFAKAEQLAELVAAYGEVK--AQAFEQL---K------QSYD 189 (281)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTC---CSEEEEEESSHHHHHHHHHHHGGGSCEE--EEEGGGC---C------SCEE
T ss_pred cCCEEEEECc-hHHHHHHHHHHHhcC---CCeEEEEECCHHHHHHHHHHhhccCCee--EeeHHHh---c------CCCC
Confidence 4689999996 789999999999999 5 899999987776666554432 122 1222221 1 2789
Q ss_pred EEEEcccc
Q 022280 79 VVVNCAAL 86 (300)
Q Consensus 79 ~vih~a~~ 86 (300)
+||++-..
T Consensus 190 iIInaTp~ 197 (281)
T 3o8q_A 190 VIINSTSA 197 (281)
T ss_dssp EEEECSCC
T ss_pred EEEEcCcC
Confidence 99998543
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00026 Score=60.47 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh----hhc---CCCceeEEEeecCCchhHHHHHHhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL----LDA---LPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~----~~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
++++|.|+|| |.+|+.++..|+.+|.- .++.+.+.++++.... .+. .+..+. +..| +. +.+
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~-~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~-v~~~--~~-------~a~ 72 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIV-DELVIIDLDTEKVRGDVMDLKHATPYSPTTVR-VKAG--EY-------SDC 72 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSC-SEEEEECSCHHHHHHHHHHHHHHGGGSSSCCE-EEEC--CG-------GGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCC-CEEEEEeCChhHhhhhhhhHHhhhhhcCCCeE-EEeC--CH-------HHh
Confidence 4569999998 99999999999988732 3788888764333221 111 111222 2221 21 123
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
.+.|+||.+++...... ..-......|+.... .+.+.+.+.... .++.+|
T Consensus 73 ~~aDvVvi~ag~~~~~g--~~r~dl~~~n~~i~~-~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 73 HDADLVVICAGAAQKPG--ETRLDLVSKNLKIFK-SIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp TTCSEEEECCCCCCCTT--CCHHHHHHHHHHHHH-HHHHHHHHTTCCSEEEECS
T ss_pred CCCCEEEECCCCCCCCC--CcHHHHHHHHHHHHH-HHHHHHHHhCCCcEEEEec
Confidence 38999999998643221 123345566665553 777777776554 444443
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0012 Score=57.39 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+|+|.|+| .|.+|..+++.|++.| ++|++.+|+++....+.+. ++ ....+++++.+....+|+||
T Consensus 21 ~~mkIgiIG-lG~mG~~~A~~L~~~G---~~V~v~dr~~~~~~~l~~~---g~-------~~~~s~~e~~~~a~~~DvVi 86 (358)
T 4e21_A 21 QSMQIGMIG-LGRMGADMVRRLRKGG---HECVVYDLNVNAVQALERE---GI-------AGARSIEEFCAKLVKPRVVW 86 (358)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHTT---TC-------BCCSSHHHHHHHSCSSCEEE
T ss_pred cCCEEEEEC-chHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHC---CC-------EEeCCHHHHHhcCCCCCEEE
Confidence 458999998 8999999999999999 8999999987666655432 11 11223455555444679998
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
-+..
T Consensus 87 ~~vp 90 (358)
T 4e21_A 87 LMVP 90 (358)
T ss_dssp ECSC
T ss_pred EeCC
Confidence 8754
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0019 Score=56.22 Aligned_cols=74 Identities=23% Similarity=0.174 Sum_probs=50.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhH-HHHHHhcC--CCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGF-DAVALKFG--QPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~~~--~~d~ 79 (300)
+.+|||+| +|.+|...++.+...| .+|+++++++++.+.+ .+++. . ...| .+.+++ +.+.+..+ ++|+
T Consensus 190 g~~VlV~G-~G~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~-~~lGa--~-~vi~-~~~~~~~~~v~~~~~g~g~D~ 260 (363)
T 3uog_A 190 GDRVVVQG-TGGVALFGLQIAKATG---AEVIVTSSSREKLDRA-FALGA--D-HGIN-RLEEDWVERVYALTGDRGADH 260 (363)
T ss_dssp TCEEEEES-SBHHHHHHHHHHHHTT---CEEEEEESCHHHHHHH-HHHTC--S-EEEE-TTTSCHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcC---CEEEEEecCchhHHHH-HHcCC--C-EEEc-CCcccHHHHHHHHhCCCCceE
Confidence 57899999 8999999999999999 8999999886555443 33332 2 2335 432333 33333222 7999
Q ss_pred EEEccc
Q 022280 80 VVNCAA 85 (300)
Q Consensus 80 vih~a~ 85 (300)
||+++|
T Consensus 261 vid~~g 266 (363)
T 3uog_A 261 ILEIAG 266 (363)
T ss_dssp EEEETT
T ss_pred EEECCC
Confidence 999987
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0016 Score=56.11 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+.+|||+|+ |.+|...++.+...| .+|+++++++++.+.+ .+++.. ...|..+.+..+.+.+..+++|+||
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~-~~lGa~---~~i~~~~~~~~~~~~~~~g~~d~vi 237 (340)
T 3s2e_A 166 PGQWVVISGI-GGLGHVAVQYARAMG---LRVAAVDIDDAKLNLA-RRLGAE---VAVNARDTDPAAWLQKEIGGAHGVL 237 (340)
T ss_dssp TTSEEEEECC-STTHHHHHHHHHHTT---CEEEEEESCHHHHHHH-HHTTCS---EEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHH-HHcCCC---EEEeCCCcCHHHHHHHhCCCCCEEE
Confidence 3578999996 889999999999999 8999998886655433 334322 2345555554444444445899999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+++
T Consensus 238 d~~g 241 (340)
T 3s2e_A 238 VTAV 241 (340)
T ss_dssp ESSC
T ss_pred EeCC
Confidence 9876
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00074 Score=54.26 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++|+|.|+| +|.+|+.+++.|++.| ++|++.+|+++....+.+. ++.. . ++.+.++ ++|+||
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g---~~V~~~~r~~~~~~~~~~~---g~~~-----~---~~~~~~~---~~DvVi 88 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSG---FKVVVGSRNPKRTARLFPS---AAQV-----T---FQEEAVS---SPEVIF 88 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHSBT---TSEE-----E---EHHHHTT---SCSEEE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHc---CCce-----e---cHHHHHh---CCCEEE
Confidence 357899999 8999999999999999 7899988876554444322 2221 1 2334443 899999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+..
T Consensus 89 ~av~ 92 (215)
T 2vns_A 89 VAVF 92 (215)
T ss_dssp ECSC
T ss_pred ECCC
Confidence 8864
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00071 Score=60.70 Aligned_cols=41 Identities=22% Similarity=0.103 Sum_probs=35.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL 46 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~ 46 (300)
+++|||+||+|.||...++.+...| .+|+++.+++++...+
T Consensus 221 g~~VlV~GasG~iG~~a~qla~~~G---a~vi~~~~~~~~~~~~ 261 (447)
T 4a0s_A 221 GDIVLIWGASGGLGSYAIQFVKNGG---GIPVAVVSSAQKEAAV 261 (447)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHH
Confidence 5789999999999999999999999 8899888876554443
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0038 Score=53.02 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=66.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh----hhc---CCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL----LDA---LPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~----~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|+|.|+|+ |.+|+.++..|+..|.- -++++.++++++.... .+. ...... +.+. .+.+ .+.+
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~-~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~-v~~~-~~~~-------a~~~ 69 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVA-KEVVMVDIKDGMPQGKALDMRESSPIHGFDTR-VTGT-NDYG-------PTED 69 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCS-SEEEEECSSTTHHHHHHHHHHHHHHHHTCCCE-EEEE-SSSG-------GGTT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCC-CEEEEEeCchHHHHHHHHHHhccccccCCCcE-EEEC-CCHH-------HhCC
Confidence 68999996 99999999999999831 2899999887654321 111 011122 2221 1221 2338
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
.|+||.+||....+. ....+.+..|+.-.. .+.+.+.+.... .++.+|
T Consensus 70 aDvVii~ag~~~kpG--~~R~dl~~~N~~i~~-~i~~~i~~~~p~a~vivvt 118 (314)
T 3nep_X 70 SDVCIITAGLPRSPG--MSRDDLLAKNTEIVG-GVTEQFVEGSPDSTIIVVA 118 (314)
T ss_dssp CSEEEECCCC---------CHHHHHHHHHHHH-HHHHHHHTTCTTCEEEECC
T ss_pred CCEEEECCCCCCCCC--CCHHHHHHhhHHHHH-HHHHHHHHhCCCcEEEecC
Confidence 999999998653221 123456677776653 788888776554 555555
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0017 Score=56.25 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=51.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHhc-----CC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALKF-----GQ 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~-----~~ 76 (300)
+.+|||+|+ |.+|...++.+...| .+|+++++++++.+.+ .+++.. ...|..+ .+..+++.+.. .+
T Consensus 169 g~~VlV~Ga-G~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~-~~lGa~---~~~~~~~~~~~~~~i~~~~~~~~g~g 240 (352)
T 1e3j_A 169 GTTVLVIGA-GPIGLVSVLAAKAYG---AFVVCTARSPRRLEVA-KNCGAD---VTLVVDPAKEEESSIIERIRSAIGDL 240 (352)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCHHHHHHH-HHTTCS---EEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CEEEEEcCCHHHHHHH-HHhCCC---EEEcCcccccHHHHHHHHhccccCCC
Confidence 578999996 999999999999999 8898888876554433 333322 2335553 33334443322 37
Q ss_pred CCEEEEccc
Q 022280 77 PDVVVNCAA 85 (300)
Q Consensus 77 ~d~vih~a~ 85 (300)
+|+||+++|
T Consensus 241 ~D~vid~~g 249 (352)
T 1e3j_A 241 PNVTIDCSG 249 (352)
T ss_dssp CSEEEECSC
T ss_pred CCEEEECCC
Confidence 999999987
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00045 Score=57.71 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.+++++|+|+ |.+|++++..|++.| . +|++..|+.++...+... +.. ...+++.+. ....|+|
T Consensus 116 ~~k~vlvlGa-Gg~g~aia~~L~~~G---~~~v~v~~R~~~~a~~la~~----~~~-----~~~~~~~~~---~~~aDiV 179 (277)
T 3don_A 116 EDAYILILGA-GGASKGIANELYKIV---RPTLTVANRTMSRFNNWSLN----INK-----INLSHAESH---LDEFDII 179 (277)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHTTC---CSCCEEECSCGGGGTTCCSC----CEE-----ECHHHHHHT---GGGCSEE
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHh----ccc-----ccHhhHHHH---hcCCCEE
Confidence 3678999995 899999999999999 6 789999987665544322 111 112223332 3379999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|++-..
T Consensus 180 InaTp~ 185 (277)
T 3don_A 180 INTTPA 185 (277)
T ss_dssp EECCC-
T ss_pred EECccC
Confidence 998543
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0026 Score=55.44 Aligned_cols=34 Identities=35% Similarity=0.506 Sum_probs=26.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeec
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT 36 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~ 36 (300)
|++++|.|.||||++|+.|++.|.++-. .++..+
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~--~el~~l 50 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPE--FEIHAL 50 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSS--EEEEEE
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCC--ceEEEe
Confidence 5667999999999999999998887643 666443
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00079 Score=57.97 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccC---C-CceeeecCCCCCch--h----hhhhc-CCCceeEEEeecCCchhHHHH
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEG---K-PYDVAATHHSTPLP--Q----LLLDA-LPHSFVFFDVDLKSGSGFDAV 70 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~---~-~~~v~~~~r~~~~~--~----~~~~~-~~~~~~~~~~D~~~~~~~~~~ 70 (300)
+..||.|+||+|.||+.|+-.|+.... + +.++.+.+..+... . .+.+- .+.... ....+ +..+.
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~---~~~~~--~~~~a 97 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDK---VVVTA--DPRVA 97 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEE---EEEES--CHHHH
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCc---EEEcC--ChHHH
Confidence 345899999999999999988776542 0 13677776653211 1 11111 111111 11111 12333
Q ss_pred HHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc-CC-eEEEeec
Q 022280 71 ALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK-EN-LLIHLST 128 (300)
Q Consensus 71 ~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~-~~-~~v~~SS 128 (300)
++ +.|+||-+||...-+. ..-++.+..|..-. ..+.+.+.+.. .. .++.+|-
T Consensus 98 ~~---~advVvi~aG~prkpG--mtR~DLl~~Na~I~-~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 98 FD---GVAIAIMCGAFPRKAG--MERKDLLEMNARIF-KEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp TT---TCSEEEECCCCCCCTT--CCHHHHHHHHHHHH-HHHHHHHHHHSCTTCEEEECSS
T ss_pred hC---CCCEEEECCCCCCCCC--CCHHHHHHHhHHHH-HHHHHHHHhhccCceEEEEeCC
Confidence 33 9999999999764332 23466788887765 37777776643 22 4556663
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.002 Score=56.02 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCce-eeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH-Hhc--CCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA-LKF--GQP 77 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~--~~~ 77 (300)
.+.+|||+|+ |.+|...++.+...| .+ |+++++++++.+.+.+. .+.+.-+..|-.+.+++.+.+ +.. .++
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~G---a~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~ 253 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAG---ACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEP 253 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTT---CCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcC---CCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCCC
Confidence 3578999998 999999999999999 66 88888876655544333 322222333333334443333 322 269
Q ss_pred CEEEEccc
Q 022280 78 DVVVNCAA 85 (300)
Q Consensus 78 d~vih~a~ 85 (300)
|+||.+.|
T Consensus 254 Dvvid~~g 261 (363)
T 3m6i_A 254 AVALECTG 261 (363)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99999987
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00085 Score=57.76 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=55.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
++++|.|+ |-+|+.+++.|.++| + |++.+++++... +.+ ..+.++.+|.+|++.++++ ...+.|.|+-+
T Consensus 116 ~~viI~G~-G~~g~~l~~~L~~~g---~-v~vid~~~~~~~-~~~---~~~~~i~gd~~~~~~L~~a--~i~~a~~vi~~ 184 (336)
T 1lnq_A 116 RHVVICGW-SESTLECLRELRGSE---V-FVLAEDENVRKK-VLR---SGANFVHGDPTRVSDLEKA--NVRGARAVIVD 184 (336)
T ss_dssp CEEEEESC-CHHHHHHHTTGGGSC---E-EEEESCGGGHHH-HHH---TTCEEEESCTTSHHHHHHT--CSTTEEEEEEC
T ss_pred CCEEEECC-cHHHHHHHHHHHhCC---c-EEEEeCChhhhh-HHh---CCcEEEEeCCCCHHHHHhc--ChhhccEEEEc
Confidence 47999995 999999999999999 8 999988877665 433 3567789999998876654 12378888876
Q ss_pred c
Q 022280 84 A 84 (300)
Q Consensus 84 a 84 (300)
.
T Consensus 185 ~ 185 (336)
T 1lnq_A 185 L 185 (336)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0017 Score=55.95 Aligned_cols=74 Identities=12% Similarity=0.028 Sum_probs=49.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh-cCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK-FGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~~~d~v 80 (300)
+.+|||+|| |.+|...++.+...| . +|+++++++++.+.+. .+ .. ...|..+.+..+.+.+. -.++|+|
T Consensus 165 g~~VlV~Ga-G~vG~~~~q~a~~~G---a~~Vi~~~~~~~~~~~~~-~l---a~-~v~~~~~~~~~~~~~~~~~~g~D~v 235 (343)
T 2dq4_A 165 GKSVLITGA-GPIGLMAAMVVRASG---AGPILVSDPNPYRLAFAR-PY---AD-RLVNPLEEDLLEVVRRVTGSGVEVL 235 (343)
T ss_dssp TSCEEEECC-SHHHHHHHHHHHHTT---CCSEEEECSCHHHHGGGT-TT---CS-EEECTTTSCHHHHHHHHHSSCEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CCEEEEECCCHHHHHHHH-Hh---HH-hccCcCccCHHHHHHHhcCCCCCEE
Confidence 578999999 999999999999999 7 8999998765544332 22 11 23455443322222221 1379999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|+++|
T Consensus 236 id~~g 240 (343)
T 2dq4_A 236 LEFSG 240 (343)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 99987
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0017 Score=55.58 Aligned_cols=72 Identities=19% Similarity=0.133 Sum_probs=48.2
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEEEE
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVVVN 82 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~vih 82 (300)
+|||+||+|.+|...++.+...| .+|+++++++++.+.+. +++.. ...|..+.+ .+..+.. +++|+||+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~G---a~vi~~~~~~~~~~~~~-~lGa~---~~i~~~~~~--~~~~~~~~~~~~d~vid 222 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRG---YTVEASTGKAAEHDYLR-VLGAK---EVLAREDVM--AERIRPLDKQRWAAAVD 222 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTT---CCEEEEESCTTCHHHHH-HTTCS---EEEECC-----------CCSCCEEEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHH-HcCCc---EEEecCCcH--HHHHHHhcCCcccEEEE
Confidence 79999999999999999999999 88999999877665543 34322 123444432 1111211 36899999
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
++|
T Consensus 223 ~~g 225 (328)
T 1xa0_A 223 PVG 225 (328)
T ss_dssp CST
T ss_pred CCc
Confidence 987
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0049 Score=51.85 Aligned_cols=110 Identities=14% Similarity=0.018 Sum_probs=68.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhc---CCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDA---LPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|+|.|+|+ |.+|+.++..|+..|.- -+|++.+++++.... +.+. ++.... +.+- +|.+ .+ .+
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~-~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~-i~~t-~d~~----a~---~~ 69 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDV-DEIALVDIAEDLAVGEAMDLAHAAAGIDKYPK-IVGG-ADYS----LL---KG 69 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCC-SEEEEECSSHHHHHHHHHHHHHHHHTTTCCCE-EEEE-SCGG----GG---TT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCC-CeEEEEECChHHHHHHHHHHHhhhhhcCCCCE-EEEe-CCHH----Hh---CC
Confidence 68999998 99999999999999831 189999988654431 1111 112222 2210 1222 22 38
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
.|+||.+||...... ....+.+..|+.-.. .+.+.+.+.+.. .++.+|
T Consensus 70 aDiVViaag~~~kpG--~~R~dl~~~N~~i~~-~i~~~i~~~~p~a~iivvs 118 (294)
T 1oju_A 70 SEIIVVTAGLARKPG--MTRLDLAHKNAGIIK-DIAKKIVENAPESKILVVT 118 (294)
T ss_dssp CSEEEECCCCCCCSS--CCHHHHHHHHHHHHH-HHHHHHHTTSTTCEEEECS
T ss_pred CCEEEECCCCCCCCC--CcHHHHHHHHHHHHH-HHHHHHHhhCCCeEEEEeC
Confidence 999999998653221 133456777766553 788888876654 555555
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0022 Score=55.78 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.0
Q ss_pred CCeEEEEcCCccchHHHHHh-hhhcc
Q 022280 3 KKRVLVVGGTGYLGQHLLQG-LSEIE 27 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~-L~~~g 27 (300)
|++|.|.||||++|+.|++. |.+++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~ 26 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERD 26 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTG
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCC
Confidence 47999999999999999995 55454
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0013 Score=59.24 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=34.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL 46 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~ 46 (300)
+.+|||+||+|.||...++.+...| .+|+++++++++.+.+
T Consensus 229 g~~VlV~GasG~vG~~avqlak~~G---a~vi~~~~~~~~~~~~ 269 (456)
T 3krt_A 229 GDNVLIWGASGGLGSYATQFALAGG---ANPICVVSSPQKAEIC 269 (456)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC---CeEEEEECCHHHHHHH
Confidence 5789999999999999999999999 8899888775554443
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0052 Score=54.79 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=60.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc---eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH-hcCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY---DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL-KFGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~~~~d 78 (300)
+++|+|.| .|.||+.+++.|+++.. + +|++.+...... .+.+.. ++.+...++++.+ +++.++ .+.+.|
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~d--v~~~~I~vaD~~~~~~-~~~~~~--g~~~~~~~Vdadn-v~~~l~aLl~~~D 85 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFD--IKPSQVTIIAAEGTKV-DVAQQY--GVSFKLQQITPQN-YLEVIGSTLEEND 85 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBC--CCGGGEEEEESSCCSC-CHHHHH--TCEEEECCCCTTT-HHHHTGGGCCTTC
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCC--CceeEEEEeccchhhh-hHHhhc--CCceeEEeccchh-HHHHHHHHhcCCC
Confidence 46899999 99999999999999764 4 577776654332 222222 2344555554432 333222 222459
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEee
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLS 127 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~S 127 (300)
+|||++-... . ..++++|.+.|+ +++=++
T Consensus 86 vVIN~s~~~~------------------~-l~Im~acleaGv-~YlDTa 114 (480)
T 2ph5_A 86 FLIDVSIGIS------------------S-LALIILCNQKGA-LYINAA 114 (480)
T ss_dssp EEEECCSSSC------------------H-HHHHHHHHHHTC-EEEESS
T ss_pred EEEECCcccc------------------C-HHHHHHHHHcCC-CEEECC
Confidence 9999653211 1 388999999988 544333
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0065 Score=52.10 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
||++||.|.|+ |.||+.+++.|.++.. .++++...
T Consensus 1 mm~ikVgI~G~-GrIGr~l~R~l~~~p~--vevvaI~d 35 (337)
T 3e5r_O 1 MGKIKIGINGF-GRIGRLVARVALQSED--VELVAVND 35 (337)
T ss_dssp -CCEEEEEECC-SHHHHHHHHHHHTCSS--EEEEEEEC
T ss_pred CCceEEEEECc-CHHHHHHHHHHhCCCC--eEEEEEEC
Confidence 55569999999 9999999999988632 77776654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0047 Score=53.86 Aligned_cols=75 Identities=19% Similarity=0.078 Sum_probs=52.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~vi 81 (300)
+.+|||+||+|.+|...++.+...| .+|+++. ++++.+ +..+++. . ...|..+.+..+.+.+.. +++|+||
T Consensus 165 g~~VlV~Ga~G~vG~~a~qla~~~G---a~Vi~~~-~~~~~~-~~~~lGa--~-~vi~~~~~~~~~~v~~~t~g~~d~v~ 236 (371)
T 3gqv_A 165 PVYVLVYGGSTATATVTMQMLRLSG---YIPIATC-SPHNFD-LAKSRGA--E-EVFDYRAPNLAQTIRTYTKNNLRYAL 236 (371)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEE-CGGGHH-HHHHTTC--S-EEEETTSTTHHHHHHHHTTTCCCEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCC---CEEEEEe-CHHHHH-HHHHcCC--c-EEEECCCchHHHHHHHHccCCccEEE
Confidence 4689999999999999999999999 8888876 444443 4444442 2 234555554333333322 3699999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+.|
T Consensus 237 d~~g 240 (371)
T 3gqv_A 237 DCIT 240 (371)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9987
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0017 Score=56.46 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=52.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCc-hhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG-SGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~d~vi 81 (300)
+.+|||+|+ |.+|...++.+...| .+|+++++++++.+.+.+ ++. . ...|..+. +..+.+ . +++|+||
T Consensus 180 g~~VlV~Ga-G~vG~~~~qlak~~G---a~Vi~~~~~~~~~~~~~~-lGa--~-~v~~~~~~~~~~~~~-~--~~~D~vi 248 (360)
T 1piw_A 180 GKKVGIVGL-GGIGSMGTLISKAMG---AETYVISRSSRKREDAMK-MGA--D-HYIATLEEGDWGEKY-F--DTFDLIV 248 (360)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHT---CEEEEEESSSTTHHHHHH-HTC--S-EEEEGGGTSCHHHHS-C--SCEEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHH-cCC--C-EEEcCcCchHHHHHh-h--cCCCEEE
Confidence 578999999 999999999999999 889999998776654443 332 1 22354443 322222 2 4899999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.++|.
T Consensus 249 d~~g~ 253 (360)
T 1piw_A 249 VCASS 253 (360)
T ss_dssp ECCSC
T ss_pred ECCCC
Confidence 99874
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0031 Score=55.98 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|+| +|.+|+.+++.+.+.| ++|++++..++..... +.+ ..+..|..|.+.+.++.+ ++|+|+
T Consensus 34 ~~~~IlIlG-~G~lg~~~~~aa~~lG---~~v~v~d~~~~~p~~~---~ad--~~~~~~~~d~~~l~~~a~---~~D~V~ 101 (419)
T 4e4t_A 34 PGAWLGMVG-GGQLGRMFCFAAQSMG---YRVAVLDPDPASPAGA---VAD--RHLRAAYDDEAALAELAG---LCEAVS 101 (419)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCTTCHHHH---HSS--EEECCCTTCHHHHHHHHH---HCSEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEECCCCcCchhh---hCC--EEEECCcCCHHHHHHHHh---cCCEEE
Confidence 467999999 6899999999999999 8999887654432211 111 235678889888888775 799988
Q ss_pred E
Q 022280 82 N 82 (300)
Q Consensus 82 h 82 (300)
-
T Consensus 102 ~ 102 (419)
T 4e4t_A 102 T 102 (419)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.003 Score=54.76 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=50.1
Q ss_pred CeEEEEcCCccchHHH-HHhh-hhccCCCce-eeecCCCCC---chhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 4 KRVLVVGGTGYLGQHL-LQGL-SEIEGKPYD-VAATHHSTP---LPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 4 ~~ilItGatG~iG~~l-~~~L-~~~g~~~~~-v~~~~r~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
.+|||+|| |.+|... ++.+ ...| .+ |++++++++ +.+.+ .+++ ...+ |..+.+..+ +.+..+++
T Consensus 174 ~~VlV~Ga-G~vG~~a~iqla~k~~G---a~~Vi~~~~~~~~~~~~~~~-~~lG--a~~v--~~~~~~~~~-i~~~~gg~ 243 (357)
T 2b5w_A 174 SSAFVLGN-GSLGLLTLAMLKVDDKG---YENLYCLGRRDRPDPTIDII-EELD--ATYV--DSRQTPVED-VPDVYEQM 243 (357)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHCTTC---CCEEEEEECCCSSCHHHHHH-HHTT--CEEE--ETTTSCGGG-HHHHSCCE
T ss_pred CEEEEECC-CHHHHHHHHHHHHHHcC---CcEEEEEeCCcccHHHHHHH-HHcC--Cccc--CCCccCHHH-HHHhCCCC
Confidence 79999999 9999999 9988 8889 76 999998876 54443 3443 3323 665433222 22222379
Q ss_pred CEEEEccc
Q 022280 78 DVVVNCAA 85 (300)
Q Consensus 78 d~vih~a~ 85 (300)
|+||++.|
T Consensus 244 Dvvid~~g 251 (357)
T 2b5w_A 244 DFIYEATG 251 (357)
T ss_dssp EEEEECSC
T ss_pred CEEEECCC
Confidence 99999987
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0036 Score=51.12 Aligned_cols=78 Identities=13% Similarity=0.142 Sum_probs=47.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeee-cCCCCCch------hhhhhcCCCceeEEEeecCCchhHHHHHHh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA-THHSTPLP------QLLLDALPHSFVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~-~~r~~~~~------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (300)
|+||||.|+|+ |.+|+.+++.+.+++ .++++ .+++++.. ..+ +.+. ... +..|++.++.+...++.
T Consensus 1 M~MmkI~ViGa-GrMG~~i~~~l~~~~---~eLva~~d~~~~~~~gv~v~~dl-~~l~-~~D-VvIDft~p~a~~~~~~l 73 (243)
T 3qy9_A 1 MASMKILLIGY-GAMNQRVARLAEEKG---HEIVGVIENTPKATTPYQQYQHI-ADVK-GAD-VAIDFSNPNLLFPLLDE 73 (243)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEECSSCC--CCSCBCSCT-TTCT-TCS-EEEECSCHHHHHHHHTS
T ss_pred CCceEEEEECc-CHHHHHHHHHHHhCC---CEEEEEEecCccccCCCceeCCH-HHHh-CCC-EEEEeCChHHHHHHHHH
Confidence 67899999999 999999999999988 55555 44443210 000 0111 223 45678887775555542
Q ss_pred cCCCCEEEEccc
Q 022280 74 FGQPDVVVNCAA 85 (300)
Q Consensus 74 ~~~~d~vih~a~ 85 (300)
..+..+|+...|
T Consensus 74 ~~g~~vVigTTG 85 (243)
T 3qy9_A 74 DFHLPLVVATTG 85 (243)
T ss_dssp CCCCCEEECCCS
T ss_pred hcCCceEeCCCC
Confidence 235777776655
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0037 Score=54.69 Aligned_cols=69 Identities=19% Similarity=0.331 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|+| +|.+|+.+++.+.+.| ++|++++..++.... +..+ .++..|..|.+.+.++.+ ++|+|.
T Consensus 11 ~~~~IlIlG-~G~lg~~la~aa~~lG---~~viv~d~~~~~p~~---~~ad--~~~~~~~~d~~~l~~~~~---~~dvi~ 78 (377)
T 3orq_A 11 FGATIGIIG-GGQLGKMMAQSAQKMG---YKVVVLDPSEDCPCR---YVAH--EFIQAKYDDEKALNQLGQ---KCDVIT 78 (377)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESCTTCTTG---GGSS--EEEECCTTCHHHHHHHHH---HCSEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEECCCCChhh---hhCC--EEEECCCCCHHHHHHHHH---hCCcce
Confidence 467999999 6889999999999999 899998876543211 1111 246788999888888877 588774
Q ss_pred E
Q 022280 82 N 82 (300)
Q Consensus 82 h 82 (300)
-
T Consensus 79 ~ 79 (377)
T 3orq_A 79 Y 79 (377)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.01 Score=51.16 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
+|++|.|.|+ |+||+.+++.|.++.. ++|++...
T Consensus 16 ~~ikVgI~G~-G~iGr~llR~l~~~p~--veivaind 49 (354)
T 3cps_A 16 FQGTLGINGF-GRIGRLVLRACMERND--ITVVAIND 49 (354)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHTCSS--CEEEEEEC
T ss_pred cceEEEEECC-CHHHHHHHHHHHcCCC--eEEEEecC
Confidence 3569999999 9999999999998743 77776654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00092 Score=56.76 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=35.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD 48 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~ 48 (300)
|+||+|.|.| .|.+|+.++..|++.| ++|++.+|+++..+.+.+
T Consensus 1 ~~~m~i~iiG-~G~~G~~~a~~l~~~g---~~V~~~~r~~~~~~~~~~ 44 (316)
T 2ew2_A 1 SNAMKIAIAG-AGAMGSRLGIMLHQGG---NDVTLIDQWPAHIEAIRK 44 (316)
T ss_dssp ---CEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHh
Confidence 4678999999 5999999999999999 899999998666555543
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0055 Score=52.11 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=67.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCC--Cchhhh----hhcC---CCceeEEEeecCCchhHHHHHH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHST--PLPQLL----LDAL---PHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~--~~~~~~----~~~~---~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
+++|.|+|+ |.+|+.++..|+..| + +|++.++++ +..... .+.. +.... +.+. .+. +
T Consensus 8 ~~kv~ViGa-G~vG~~ia~~l~~~g---~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~-i~~t-~d~-------~ 74 (315)
T 3tl2_A 8 RKKVSVIGA-GFTGATTAFLLAQKE---LADVVLVDIPQLENPTKGKALDMLEASPVQGFDAN-IIGT-SDY-------A 74 (315)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT---CCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCC-EEEE-SCG-------G
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCE-EEEc-CCH-------H
Confidence 468999996 999999999999999 7 899998873 222211 1110 01111 1110 122 2
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
.+.+.|+||.+||....+. ....+.+..|+... ..+.+.+.+.... .++.+|
T Consensus 75 a~~~aDvVIiaag~p~kpg--~~R~dl~~~N~~i~-~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 75 DTADSDVVVITAGIARKPG--MSRDDLVATNSKIM-KSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp GGTTCSEEEECCSCCCCTT--CCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECC
T ss_pred HhCCCCEEEEeCCCCCCCC--CCHHHHHHHHHHHH-HHHHHHHHHhCCCeEEEECC
Confidence 2348999999998653221 23456677777665 3788888776554 556555
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0065 Score=49.91 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=27.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
.++|+|.|+ |.+|+++++.|+..|- -++.+.+++
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gv--g~i~lvD~d 61 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGV--GTLVLADDD 61 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTC--SEEEEECCC
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence 578999995 6699999999999994 256666554
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.004 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=27.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
|||.||.|.|. |.||+.+++.|.++.. .++++...
T Consensus 1 mM~ikVgI~G~-G~iGr~~~R~l~~~~~--vevvaI~d 35 (335)
T 1u8f_O 1 MGKVKVGVNGF-GRIGRLVTRAAFNSGK--VDIVAIND 35 (335)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHHCS--SEEEEEEC
T ss_pred CCceEEEEEcc-CHHHHHHHHHHHcCCC--cEEEEecC
Confidence 56679999996 9999999999988643 77776554
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0063 Score=54.45 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=49.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEe------ecCCchhHHHHHHhc
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV------DLKSGSGFDAVALKF 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~------D~~~~~~~~~~~~~~ 74 (300)
|++++|||+| .|.+|..+++.+.+.| +++++++..++...... .+.+... ... +..|.+.+.++.++.
T Consensus 4 m~~~kiLI~g-~g~~a~~i~~aa~~~G---~~~v~v~~~~~~~~~~~-~~ad~~~-~i~~~~~~~~~~d~~~l~~~~~~~ 77 (446)
T 3ouz_A 4 MEIKSILIAN-RGEIALRALRTIKEMG---KKAICVYSEADKDALYL-KYADASI-CIGKARSSESYLNIPAIIAAAEIA 77 (446)
T ss_dssp TCCCEEEECC-CHHHHHHHHHHHHHTT---CEEEEEEEGGGTTCTHH-HHSSEEE-EEECCTTTTGGGCHHHHHHHHHHH
T ss_pred cccceEEEEC-CCHHHHHHHHHHHHcC---CEEEEEEcCcccccchH-hhCCEEE-EcCCCCccccccCHHHHHHHHHHh
Confidence 6788999999 6779999999999999 88888754322111111 1112111 121 556666667766665
Q ss_pred CCCCEEEEc
Q 022280 75 GQPDVVVNC 83 (300)
Q Consensus 75 ~~~d~vih~ 83 (300)
++|+|+-.
T Consensus 78 -~~d~i~p~ 85 (446)
T 3ouz_A 78 -EADAIFPG 85 (446)
T ss_dssp -TCSEEECC
T ss_pred -CcCEEEEC
Confidence 89988754
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0046 Score=52.89 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhc--CCCceeEEEeecCCchhHHHHHHhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDA--LPHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
.+++|.|+|+ |.+|..++..|+.+|.- .++++.+.+.++... +.+. +......+.. .|. + .+.
T Consensus 18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~-~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~---~----~~~ 86 (331)
T 4aj2_A 18 PQNKITVVGV-GAVGMACAISILMKDLA-DELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDY---S----VTA 86 (331)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCC-SEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSG---G----GGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCC-ceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCH---H----HhC
Confidence 4679999997 99999999999999831 278888887543332 1111 1111111111 222 2 123
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEeec
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLST 128 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS 128 (300)
+.|+||.+||...... ....+.+..|+.-.. .+.+.+.+.... .++.+|-
T Consensus 87 ~aDiVvi~aG~~~kpG--~tR~dL~~~N~~I~~-~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 87 NSKLVIITAGARQQEG--ESRLNLVQRNVNIFK-FIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp TEEEEEECCSCCCCTT--CCGGGGHHHHHHHHH-HHHHHHHHHCTTCEEEECSS
T ss_pred CCCEEEEccCCCCCCC--ccHHHHHHHHHHHHH-HHHHHHHHHCCCeEEEEecC
Confidence 8999999999653321 234566777876653 788888876554 5666653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0047 Score=54.53 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=51.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcC--CCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFG--QPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~d~ 79 (300)
+.+|||+|+ |.+|...++.+...| . +|+++++++++.+.. .+++. . ...|..+.+..+.+.+..+ ++|+
T Consensus 214 g~~VlV~Ga-G~vG~~aiqlak~~G---a~~Vi~~~~~~~~~~~~-~~lGa--~-~vi~~~~~~~~~~i~~~t~g~g~D~ 285 (404)
T 3ip1_A 214 GDNVVILGG-GPIGLAAVAILKHAG---ASKVILSEPSEVRRNLA-KELGA--D-HVIDPTKENFVEAVLDYTNGLGAKL 285 (404)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CSEEEEECSCHHHHHHH-HHHTC--S-EEECTTTSCHHHHHHHHTTTCCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CCEEEEECCCHHHHHHH-HHcCC--C-EEEcCCCCCHHHHHHHHhCCCCCCE
Confidence 578999998 999999999999999 7 899888876554433 33332 2 2345555443344443322 6999
Q ss_pred EEEcccc
Q 022280 80 VVNCAAL 86 (300)
Q Consensus 80 vih~a~~ 86 (300)
||.++|.
T Consensus 286 vid~~g~ 292 (404)
T 3ip1_A 286 FLEATGV 292 (404)
T ss_dssp EEECSSC
T ss_pred EEECCCC
Confidence 9999873
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.006 Score=54.63 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=36.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD 48 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~ 48 (300)
+|+|.|.| +|++|..++..|++.| ++|++.++++++.+.+.+
T Consensus 2 ~mkI~VIG-~G~vG~~lA~~La~~G---~~V~~~D~~~~~v~~l~~ 43 (450)
T 3gg2_A 2 SLDIAVVG-IGYVGLVSATCFAELG---ANVRCIDTDRNKIEQLNS 43 (450)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhcC---CEEEEEECCHHHHHHHHc
Confidence 37999998 7999999999999999 899999998776665544
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0034 Score=52.57 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++|+|.|.| +|.+|+.+++.|++.|++..+|++.+|+++....+.+.++ +.. ..+ ..+.++ ..|+|
T Consensus 1 M~~~~I~iIG-~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~g--i~~----~~~---~~~~~~---~aDvV 67 (280)
T 3tri_A 1 MNTSNITFIG-GGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCG--VHT----TQD---NRQGAL---NADVV 67 (280)
T ss_dssp -CCSCEEEES-CSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTC--CEE----ESC---HHHHHS---SCSEE
T ss_pred CCCCEEEEEc-ccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcC--CEE----eCC---hHHHHh---cCCeE
Confidence 6778999999 5999999999999999211289999998877776665432 221 112 233444 78988
Q ss_pred EEcc
Q 022280 81 VNCA 84 (300)
Q Consensus 81 ih~a 84 (300)
|-+.
T Consensus 68 ilav 71 (280)
T 3tri_A 68 VLAV 71 (280)
T ss_dssp EECS
T ss_pred EEEe
Confidence 8875
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0024 Score=55.39 Aligned_cols=75 Identities=15% Similarity=0.043 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+.+|||+|+ |.+|...++.+...| .+|+++++++++...+.++++.. ...|..+.+.+.+ ..+++|+||
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~G---a~Vi~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~---~~~g~D~vi 249 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMG---HHVTVISSSNKKREEALQDLGAD---DYVIGSDQAKMSE---LADSLDYVI 249 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHT---CEEEEEESSTTHHHHHHTTSCCS---CEEETTCHHHHHH---STTTEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC---CeEEEEeCChHHHHHHHHHcCCc---eeeccccHHHHHH---hcCCCCEEE
Confidence 4678999995 999999999999999 89999998877665544344322 1234444332322 224799999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
+++|.
T Consensus 250 d~~g~ 254 (357)
T 2cf5_A 250 DTVPV 254 (357)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99873
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0059 Score=53.25 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=50.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHhc--CCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALKF--GQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~~d 78 (300)
+.+|||+|+ |.+|...++.+...| . +|+++++++++.+.+. +++. . ...|..+ .+++.+.+.+. +++|
T Consensus 193 g~~VlV~Ga-G~vG~~a~qla~~~G---a~~Vi~~~~~~~~~~~~~-~lGa--~-~vi~~~~~~~~~~~~~~~~~~~g~D 264 (374)
T 1cdo_A 193 GSTCAVFGL-GAVGLAAVMGCHSAG---AKRIIAVDLNPDKFEKAK-VFGA--T-DFVNPNDHSEPISQVLSKMTNGGVD 264 (374)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CSEEEEECSCGGGHHHHH-HTTC--C-EEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CCEEEEEcCCHHHHHHHH-HhCC--c-eEEeccccchhHHHHHHHHhCCCCC
Confidence 578999995 999999999999999 7 7999888866655443 3332 2 2245443 12333333221 3799
Q ss_pred EEEEccc
Q 022280 79 VVVNCAA 85 (300)
Q Consensus 79 ~vih~a~ 85 (300)
+||+++|
T Consensus 265 ~vid~~g 271 (374)
T 1cdo_A 265 FSLECVG 271 (374)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999987
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0049 Score=51.08 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=48.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+++++|+|+ |..|++++..|++.| .+|++..|+.++...+. .++ +. ..++.+ + ...|+||+
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G---~~v~V~nRt~~ka~~la-~~~--~~--~~~~~~---l-------~~~DiVIn 178 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQG---LQVSVLNRSSRGLDFFQ-RLG--CD--CFMEPP---K-------SAFDLIIN 178 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSCTTHHHHH-HHT--CE--EESSCC---S-------SCCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHH-HCC--Ce--EecHHH---h-------ccCCEEEE
Confidence 578999995 999999999999999 78999999988887776 433 22 112222 1 17899999
Q ss_pred cccc
Q 022280 83 CAAL 86 (300)
Q Consensus 83 ~a~~ 86 (300)
+-..
T Consensus 179 aTp~ 182 (269)
T 3phh_A 179 ATSA 182 (269)
T ss_dssp CCTT
T ss_pred cccC
Confidence 8543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00066 Score=57.98 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=64.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh----hhcCC---CceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL----LDALP---HSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~----~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
+++|.|+|+ |.+|+.++..|+..|.- .+|++.+++++..... .+... .... +..| +. +.+.
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~~-~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~-i~~~--~~-------~al~ 73 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGIA-DEIVLIDANESKAIGDAMDFNHGKVFAPKPVD-IWHG--DY-------DDCR 73 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCC-SEEEEECSSHHHHHHHHHHHHHHTTSSSSCCE-EEEC--CG-------GGTT
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCC-CEEEEEeCCcchHHHHHhhHHHHhhhcCCCeE-EEcC--cH-------HHhC
Confidence 469999998 99999999999888732 4799999875433221 11111 1222 1211 21 1233
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
+.|+||.+++....... ...+.+..|..-. ..+++.+.+.... .++.+|
T Consensus 74 ~aDvViia~~~~~~~g~--~r~dl~~~n~~i~-~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 74 DADLVVICAGANQKPGE--TRLDLVDKNIAIF-RSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp TCSEEEECCSCCCCTTT--CSGGGHHHHHHHH-HHHHHHHHHHTCCSEEEECS
T ss_pred CCCEEEEcCCCCCCCCC--CHHHHHHcChHHH-HHHHHHHHHHCCCCEEEEeC
Confidence 89999999987543221 1233455555443 3777777775544 344443
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0072 Score=50.68 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
..++|+|.| .|.+|+.+++.|+..|- -++.+.+.+
T Consensus 35 ~~~~VlVvG-aGGlGs~va~~La~aGV--G~i~lvD~D 69 (292)
T 3h8v_A 35 RTFAVAIVG-VGGVGSVTAEMLTRCGI--GKLLLFDYD 69 (292)
T ss_dssp GGCEEEEEC-CSHHHHHHHHHHHHHTC--SEEEEECCC
T ss_pred hCCeEEEEC-cCHHHHHHHHHHHHcCC--CEEEEECCC
Confidence 357899999 78999999999999994 356666665
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0057 Score=53.43 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHhc--CCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALKF--GQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~~d 78 (300)
+.+|||+|+ |.+|...++.+...| . +|+++++++++.+. ..+++. . ...|..+ .+++.+.+... +++|
T Consensus 194 g~~VlV~Ga-G~vG~~a~q~a~~~G---a~~Vi~~~~~~~~~~~-a~~lGa--~-~vi~~~~~~~~~~~~i~~~~~gg~D 265 (378)
T 3uko_A 194 GSNVAIFGL-GTVGLAVAEGAKTAG---ASRIIGIDIDSKKYET-AKKFGV--N-EFVNPKDHDKPIQEVIVDLTDGGVD 265 (378)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHHT---CSCEEEECSCTTHHHH-HHTTTC--C-EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHH-HHHcCC--c-EEEccccCchhHHHHHHHhcCCCCC
Confidence 578999998 999999999999999 6 79999888776653 334432 2 2344442 22333333322 3799
Q ss_pred EEEEccc
Q 022280 79 VVVNCAA 85 (300)
Q Consensus 79 ~vih~a~ 85 (300)
+||.++|
T Consensus 266 ~vid~~g 272 (378)
T 3uko_A 266 YSFECIG 272 (378)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999987
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0038 Score=53.49 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=53.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeE--EEeecCCchhHHHHHHhcCCCCEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVF--FDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
|+|.|.||+|++|+.+++.|.++++.+.+++.+...... +..+.+ ...++.+.+. . .+ ++|+||
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~--------g~~l~~~g~~i~v~~~~~-~----~~-~~DvV~ 66 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSA--------GVRLAFRGEEIPVEPLPE-G----PL-PVDLVL 66 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGS--------SCEEEETTEEEEEEECCS-S----CC-CCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccC--------CCEEEEcCceEEEEeCCh-h----hc-CCCEEE
Confidence 579999999999999999999887553444322111000 111110 1222222110 1 13 789999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecc
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTD 129 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (300)
.|.+.... ...+....+.|+ ++|-.|+.
T Consensus 67 ~a~g~~~s-------------------~~~a~~~~~~G~-~vId~s~~ 94 (331)
T 2yv3_A 67 ASAGGGIS-------------------RAKALVWAEGGA-LVVDNSSA 94 (331)
T ss_dssp ECSHHHHH-------------------HHHHHHHHHTTC-EEEECSSS
T ss_pred ECCCccch-------------------HHHHHHHHHCCC-EEEECCCc
Confidence 99874311 255555566777 77888875
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0032 Score=54.52 Aligned_cols=77 Identities=16% Similarity=0.073 Sum_probs=49.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEE------eecC-CchhHHHHHHh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD------VDLK-SGSGFDAVALK 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~------~D~~-~~~~~~~~~~~ 73 (300)
|++|+|.|.| .|.+|..++..|.+.| ++|++.+|+++....+.+..+ +.... ..+. ..+++++.++
T Consensus 2 m~~mki~iiG-~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~- 74 (359)
T 1bg6_A 2 IESKTYAVLG-LGNGGHAFAAYLALKG---QSVLAWDIDAQRIKEIQDRGA--IIAEGPGLAGTAHPDLLTSDIGLAVK- 74 (359)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHHTS--EEEESSSCCEEECCSEEESCHHHHHT-
T ss_pred CCcCeEEEEC-CCHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHhcCC--eEEeccccccccccceecCCHHHHHh-
Confidence 4457999999 5999999999999999 889999998666655544321 11000 0010 1123444444
Q ss_pred cCCCCEEEEcccc
Q 022280 74 FGQPDVVVNCAAL 86 (300)
Q Consensus 74 ~~~~d~vih~a~~ 86 (300)
++|+||-+...
T Consensus 75 --~~D~vi~~v~~ 85 (359)
T 1bg6_A 75 --DADVILIVVPA 85 (359)
T ss_dssp --TCSEEEECSCG
T ss_pred --cCCEEEEeCCc
Confidence 89999998654
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0028 Score=53.19 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=48.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
||+|.|.| .|.+|..+++.|++.| ++|++.+|++++...+.+. ++. . .++..++.+ ..|+||-
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G---~~V~~~dr~~~~~~~~~~~---g~~-----~--~~~~~~~~~---~advvi~ 63 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAG---FDVTVWNRNPAKCAPLVAL---GAR-----Q--ASSPAEVCA---ACDITIA 63 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHT---CCEEEECSSGGGGHHHHHH---TCE-----E--CSCHHHHHH---HCSEEEE
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCC---CeEEEEcCCHHHHHHHHHC---CCe-----e--cCCHHHHHH---cCCEEEE
Confidence 46899998 8999999999999999 8899999998776665543 111 1 122444555 6788888
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+..
T Consensus 64 ~v~ 66 (287)
T 3pdu_A 64 MLA 66 (287)
T ss_dssp CCS
T ss_pred EcC
Confidence 753
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0066 Score=52.96 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=50.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHhc--CCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALKF--GQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~~d 78 (300)
+.+|||+| +|.+|...++.+...| . +|+++++++++.+.+ .+++. . ...|..+ .+++.+.+.+. +++|
T Consensus 192 g~~VlV~G-aG~vG~~a~qla~~~G---a~~Vi~~~~~~~~~~~~-~~lGa--~-~vi~~~~~~~~~~~~~~~~~~~g~D 263 (374)
T 2jhf_A 192 GSTCAVFG-LGGVGLSVIMGCKAAG---AARIIGVDINKDKFAKA-KEVGA--T-ECVNPQDYKKPIQEVLTEMSNGGVD 263 (374)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CSEEEEECSCGGGHHHH-HHTTC--S-EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHH-HHhCC--c-eEecccccchhHHHHHHHHhCCCCc
Confidence 57899999 5999999999999999 7 799988886665544 33332 2 2245443 12333333322 3799
Q ss_pred EEEEccc
Q 022280 79 VVVNCAA 85 (300)
Q Consensus 79 ~vih~a~ 85 (300)
+||+++|
T Consensus 264 ~vid~~g 270 (374)
T 2jhf_A 264 FSFEVIG 270 (374)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999987
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.004 Score=54.05 Aligned_cols=73 Identities=22% Similarity=0.165 Sum_probs=50.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--C-CCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--G-QPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~-~~d 78 (300)
+.+|||+|| |.+|...++.+... | .+|+++++++++.+.+. +++. . ...|..+. +.+.+..+ + ++|
T Consensus 187 g~~VlV~Ga-G~vG~~avqlak~~~G---a~Vi~~~~~~~~~~~~~-~lGa--~-~vi~~~~~--~~~~v~~~~~g~g~D 256 (359)
T 1h2b_A 187 GAYVAIVGV-GGLGHIAVQLLKVMTP---ATVIALDVKEEKLKLAE-RLGA--D-HVVDARRD--PVKQVMELTRGRGVN 256 (359)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHCC---CEEEEEESSHHHHHHHH-HTTC--S-EEEETTSC--HHHHHHHHTTTCCEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCC---CeEEEEeCCHHHHHHHH-HhCC--C-EEEeccch--HHHHHHHHhCCCCCc
Confidence 578999999 89999999999988 9 88999998765554433 3432 2 23455554 33222222 2 699
Q ss_pred EEEEccc
Q 022280 79 VVVNCAA 85 (300)
Q Consensus 79 ~vih~a~ 85 (300)
+||+++|
T Consensus 257 vvid~~G 263 (359)
T 1h2b_A 257 VAMDFVG 263 (359)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999987
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0069 Score=52.87 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=50.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHhc--CCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALKF--GQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~~d 78 (300)
+.+|||+|+ |.+|...++.+...| . +|+++++++++.+.+ .+++. . ...|..+ .+++.+.+.+. +++|
T Consensus 196 g~~VlV~Ga-G~vG~~aiqlak~~G---a~~Vi~~~~~~~~~~~a-~~lGa--~-~vi~~~~~~~~~~~~v~~~~~~g~D 267 (376)
T 1e3i_A 196 GSTCAVFGL-GCVGLSAIIGCKIAG---ASRIIAIDINGEKFPKA-KALGA--T-DCLNPRELDKPVQDVITELTAGGVD 267 (376)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CSEEEEECSCGGGHHHH-HHTTC--S-EEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHH-HHhCC--c-EEEccccccchHHHHHHHHhCCCcc
Confidence 578999995 999999999999999 7 799988887665544 33332 2 2235443 12233322221 3799
Q ss_pred EEEEccc
Q 022280 79 VVVNCAA 85 (300)
Q Consensus 79 ~vih~a~ 85 (300)
+||++.|
T Consensus 268 vvid~~G 274 (376)
T 1e3i_A 268 YSLDCAG 274 (376)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999987
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=53.51 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.+ +++|+|+ |..|++++..|++.| . +|++..|++++...+.+.+ .. .+ .+++.+..+ +.|+|
T Consensus 108 ~~-~vliiGa-Gg~a~ai~~~L~~~G---~~~I~v~nR~~~ka~~la~~~----~~--~~---~~~~~~~~~---~aDiV 170 (253)
T 3u62_A 108 KE-PVVVVGA-GGAARAVIYALLQMG---VKDIWVVNRTIERAKALDFPV----KI--FS---LDQLDEVVK---KAKSL 170 (253)
T ss_dssp CS-SEEEECC-SHHHHHHHHHHHHTT---CCCEEEEESCHHHHHTCCSSC----EE--EE---GGGHHHHHH---TCSEE
T ss_pred CC-eEEEECc-HHHHHHHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHc----cc--CC---HHHHHhhhc---CCCEE
Confidence 35 8999995 999999999999999 6 8999999876665554432 11 12 233445555 89999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|++-.
T Consensus 171 Inatp 175 (253)
T 3u62_A 171 FNTTS 175 (253)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 99754
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0034 Score=51.77 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+||+|.|.| +|.+|+.+++.|++.| ++|.+.+|+++....+.+.++ +. . ..+..++++ .+|+||
T Consensus 2 ~~m~i~iiG-~G~mG~~~a~~l~~~g---~~v~~~~~~~~~~~~~~~~~g--~~-----~--~~~~~~~~~---~~D~Vi 65 (259)
T 2ahr_A 2 NAMKIGIIG-VGKMASAIIKGLKQTP---HELIISGSSLERSKEIAEQLA--LP-----Y--AMSHQDLID---QVDLVI 65 (259)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHTTSS---CEEEEECSSHHHHHHHHHHHT--CC-----B--CSSHHHHHH---TCSEEE
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhCC---CeEEEECCCHHHHHHHHHHcC--CE-----e--eCCHHHHHh---cCCEEE
Confidence 367999999 8999999999999999 789999988666555543321 11 1 122445555 799999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
-+..
T Consensus 66 ~~v~ 69 (259)
T 2ahr_A 66 LGIK 69 (259)
T ss_dssp ECSC
T ss_pred EEeC
Confidence 9864
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0067 Score=52.88 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=50.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHhc--CCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALKF--GQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~~d 78 (300)
+.+|||+|+ |.+|...++.+...| . +|+++++++++.+.+. +++. . ...|..+ .+++.+.+.+. +++|
T Consensus 191 g~~VlV~Ga-G~vG~~avqla~~~G---a~~Vi~~~~~~~~~~~~~-~lGa--~-~vi~~~~~~~~~~~~v~~~~~~g~D 262 (373)
T 2fzw_A 191 GSVCAVFGL-GGVGLAVIMGCKVAG---ASRIIGVDINKDKFARAK-EFGA--T-ECINPQDFSKPIQEVLIEMTDGGVD 262 (373)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHT---CSEEEEECSCGGGHHHHH-HHTC--S-EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHHH-HcCC--c-eEeccccccccHHHHHHHHhCCCCC
Confidence 578999995 999999999999999 7 7999888866655443 3322 1 2234443 12333333322 3799
Q ss_pred EEEEccc
Q 022280 79 VVVNCAA 85 (300)
Q Consensus 79 ~vih~a~ 85 (300)
+||+++|
T Consensus 263 ~vid~~g 269 (373)
T 2fzw_A 263 YSFECIG 269 (373)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999987
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0032 Score=52.60 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=28.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
++||.|.|++|-+|+.+++.+.+.-. .++++...+
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~~~--~eLvg~vd~ 55 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRRKD--VELCAVLVR 55 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTCSS--EEEEEEBCC
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCC--CEEEEEEec
Confidence 46899999999999999999886532 787766444
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0051 Score=51.93 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=31.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
+++|.|.||.|.+|..+++.|.+.| ++|++.+|++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G---~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASG---YPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTT---CCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCC---CeEEEEECCc
Confidence 4689999999999999999999999 7898888764
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0031 Score=54.99 Aligned_cols=73 Identities=23% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+.+|||+|+ |.+|...++.+...| .+|+++++++++.+.+.+ ++. . ...|..+.+.++++. +++|+||+
T Consensus 195 g~~VlV~Ga-G~vG~~aiqlak~~G---a~Vi~~~~~~~~~~~a~~-lGa--~-~vi~~~~~~~~~~~~---~g~Dvvid 263 (369)
T 1uuf_A 195 GKKVGVVGI-GGLGHMGIKLAHAMG---AHVVAFTTSEAKREAAKA-LGA--D-EVVNSRNADEMAAHL---KSFDFILN 263 (369)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHH-HTC--S-EEEETTCHHHHHTTT---TCEEEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH-cCC--c-EEeccccHHHHHHhh---cCCCEEEE
Confidence 578999997 789999999999999 889999988766554433 332 1 234555543222222 47999999
Q ss_pred cccc
Q 022280 83 CAAL 86 (300)
Q Consensus 83 ~a~~ 86 (300)
++|.
T Consensus 264 ~~g~ 267 (369)
T 1uuf_A 264 TVAA 267 (369)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9873
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0035 Score=54.46 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=48.9
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch---hhhhhcCCCceeEEEeecCC---chhHHHHHHh----
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP---QLLLDALPHSFVFFDVDLKS---GSGFDAVALK---- 73 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~---- 73 (300)
.+|||+||+|.+|...++.+...| .+|+++.++.++. .....+++.. ...|..+ .+..+.+.+.
T Consensus 169 ~~VlV~Ga~G~vG~~aiqlak~~G---a~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~i~~~t~~~ 242 (364)
T 1gu7_A 169 DWFIQNGGTSAVGKYASQIGKLLN---FNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKEWIKQS 242 (364)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHHT---CEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred cEEEECCCCcHHHHHHHHHHHHCC---CEEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHHHHHHHhhcc
Confidence 789999999999999999999999 8898888776541 1222333322 1223322 2222222221
Q ss_pred cCCCCEEEEccc
Q 022280 74 FGQPDVVVNCAA 85 (300)
Q Consensus 74 ~~~~d~vih~a~ 85 (300)
-+++|+||.+.|
T Consensus 243 ~~g~Dvvid~~G 254 (364)
T 1gu7_A 243 GGEAKLALNCVG 254 (364)
T ss_dssp TCCEEEEEESSC
T ss_pred CCCceEEEECCC
Confidence 137999999987
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=54.45 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=47.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
||+|.|.|+||.+|+.+++.|++.| ++|++.+|+++....+.+ .+ +. ..+. .+.++ ++|+||-
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~-~g--~~-----~~~~---~~~~~---~aDvVi~ 73 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSA---HHLAAIEIAPEGRDRLQG-MG--IP-----LTDG---DGWID---EADVVVL 73 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSS---SEEEEECCSHHHHHHHHH-TT--CC-----CCCS---SGGGG---TCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHh-cC--CC-----cCCH---HHHhc---CCCEEEE
Confidence 4799999999999999999999999 899999988665555443 11 21 1222 12233 7899998
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+..
T Consensus 74 av~ 76 (286)
T 3c24_A 74 ALP 76 (286)
T ss_dssp CSC
T ss_pred cCC
Confidence 753
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0083 Score=50.66 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD 48 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~ 48 (300)
.|++|-++| .|-.|+.+++.|++.| ++|++.+|++++.+.+.+
T Consensus 2 ~M~kIgfIG-lG~MG~~mA~~L~~~G---~~v~v~dr~~~~~~~l~~ 44 (300)
T 3obb_A 2 HMKQIAFIG-LGHMGAPMATNLLKAG---YLLNVFDLVQSAVDGLVA 44 (300)
T ss_dssp -CCEEEEEC-CSTTHHHHHHHHHHTT---CEEEEECSSHHHHHHHHH
T ss_pred CcCEEEEee-ehHHHHHHHHHHHhCC---CeEEEEcCCHHHHHHHHH
Confidence 368999999 9999999999999999 899999999877766654
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0022 Score=56.14 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=52.7
Q ss_pred CCeEEEEc-CCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCE
Q 022280 3 KKRVLVVG-GTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDV 79 (300)
Q Consensus 3 ~~~ilItG-atG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~ 79 (300)
+.+|||.| |+|.+|...++.+...| .+|+++++++++.+.+. +++.. ...|..+.+..+.+.+.. .++|+
T Consensus 171 g~~vlV~gag~G~vG~~a~q~a~~~G---a~Vi~~~~~~~~~~~~~-~lGa~---~~~~~~~~~~~~~v~~~t~~~g~d~ 243 (379)
T 3iup_A 171 GHSALVHTAAASNLGQMLNQICLKDG---IKLVNIVRKQEQADLLK-AQGAV---HVCNAASPTFMQDLTEALVSTGATI 243 (379)
T ss_dssp TCSCEEESSTTSHHHHHHHHHHHHHT---CCEEEEESSHHHHHHHH-HTTCS---CEEETTSTTHHHHHHHHHHHHCCCE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHH-hCCCc---EEEeCCChHHHHHHHHHhcCCCceE
Confidence 56899997 89999999999999999 88999988766554443 33322 123444443323332221 27999
Q ss_pred EEEcccc
Q 022280 80 VVNCAAL 86 (300)
Q Consensus 80 vih~a~~ 86 (300)
||.+.|.
T Consensus 244 v~d~~g~ 250 (379)
T 3iup_A 244 AFDATGG 250 (379)
T ss_dssp EEESCEE
T ss_pred EEECCCc
Confidence 9999874
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0022 Score=55.38 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=49.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhc--cCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHhcCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEI--EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALKFGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~--g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~d~ 79 (300)
+.+|||+|+ |.+|...++.+... | .+|+++++++++.+.+. +++. . ...|..+ .+..+++.. -.++|+
T Consensus 171 g~~VlV~Ga-G~vG~~aiqlak~~~~G---a~Vi~~~~~~~~~~~~~-~lGa--~-~vi~~~~~~~~~~~~~~-g~g~D~ 241 (344)
T 2h6e_A 171 EPVVIVNGI-GGLAVYTIQILKALMKN---ITIVGISRSKKHRDFAL-ELGA--D-YVSEMKDAESLINKLTD-GLGASI 241 (344)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHCTT---CEEEEECSCHHHHHHHH-HHTC--S-EEECHHHHHHHHHHHHT-TCCEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHhcCC---CEEEEEeCCHHHHHHHH-HhCC--C-EEeccccchHHHHHhhc-CCCccE
Confidence 578999999 99999999999999 9 88999998765554333 2322 1 1223333 222233222 126999
Q ss_pred EEEccc
Q 022280 80 VVNCAA 85 (300)
Q Consensus 80 vih~a~ 85 (300)
||+++|
T Consensus 242 vid~~g 247 (344)
T 2h6e_A 242 AIDLVG 247 (344)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999987
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0042 Score=52.79 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.||+|.|.| .|.+|..+++.|++.| ++|++.+|++++...+.+. ++. . .++..++.+ ..|+||
T Consensus 20 ~m~~I~iIG-~G~mG~~~A~~l~~~G---~~V~~~dr~~~~~~~l~~~---g~~-----~--~~~~~~~~~---~aDvvi 82 (310)
T 3doj_A 20 HMMEVGFLG-LGIMGKAMSMNLLKNG---FKVTVWNRTLSKCDELVEH---GAS-----V--CESPAEVIK---KCKYTI 82 (310)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSGGGGHHHHHT---TCE-----E--CSSHHHHHH---HCSEEE
T ss_pred cCCEEEEEC-ccHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHC---CCe-----E--cCCHHHHHH---hCCEEE
Confidence 468999998 8999999999999999 8999999998776665432 111 1 122444555 678888
Q ss_pred Ecc
Q 022280 82 NCA 84 (300)
Q Consensus 82 h~a 84 (300)
-+.
T Consensus 83 ~~v 85 (310)
T 3doj_A 83 AML 85 (310)
T ss_dssp ECC
T ss_pred EEc
Confidence 765
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.003 Score=52.80 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
.+++++|+|+ |..|++++..|.+.| . +|++..|+.++...+.+.+ . ..+ ++++.+ . ..|+|
T Consensus 121 ~~k~vlvlGa-GGaaraia~~L~~~G---~~~v~v~nRt~~ka~~La~~~----~--~~~------~~~l~~-l-~~Div 182 (282)
T 3fbt_A 121 KNNICVVLGS-GGAARAVLQYLKDNF---AKDIYVVTRNPEKTSEIYGEF----K--VIS------YDELSN-L-KGDVI 182 (282)
T ss_dssp TTSEEEEECS-STTHHHHHHHHHHTT---CSEEEEEESCHHHHHHHCTTS----E--EEE------HHHHTT-C-CCSEE
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcC---CCEEEEEeCCHHHHHHHHHhc----C--ccc------HHHHHh-c-cCCEE
Confidence 4689999995 789999999999999 6 8999999877666665442 1 111 222223 4 79999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|++-..
T Consensus 183 InaTp~ 188 (282)
T 3fbt_A 183 INCTPK 188 (282)
T ss_dssp EECSST
T ss_pred EECCcc
Confidence 998643
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0082 Score=52.33 Aligned_cols=75 Identities=17% Similarity=0.080 Sum_probs=50.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCc-hhHHHHHHhc--CCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG-SGFDAVALKF--GQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~--~~~d 78 (300)
+.+|||+|+ |.+|...++.+...| . +|+++++++++.+.+ .+++. . ...|..+. +++.+.+.+. +++|
T Consensus 192 g~~VlV~Ga-G~vG~~aiqlak~~G---a~~Vi~~~~~~~~~~~a-~~lGa--~-~vi~~~~~~~~~~~~i~~~t~gg~D 263 (373)
T 1p0f_A 192 GSTCAVFGL-GGVGFSAIVGCKAAG---ASRIIGVGTHKDKFPKA-IELGA--T-ECLNPKDYDKPIYEVICEKTNGGVD 263 (373)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHT---CSEEEEECSCGGGHHHH-HHTTC--S-EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CCeEEEECCCHHHHHHH-HHcCC--c-EEEecccccchHHHHHHHHhCCCCC
Confidence 578999995 999999999999999 6 799888886665543 34432 2 22344431 2233333222 3799
Q ss_pred EEEEccc
Q 022280 79 VVVNCAA 85 (300)
Q Consensus 79 ~vih~a~ 85 (300)
+||.++|
T Consensus 264 vvid~~g 270 (373)
T 1p0f_A 264 YAVECAG 270 (373)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999987
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0082 Score=50.39 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+||+|.|.| .|.+|+.+++.|++.| ++|++.+ +++....+.+. ++. -..+..+.++ .+|+||
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g---~~V~~~~-~~~~~~~~~~~---g~~-------~~~~~~~~~~---~~D~vi 63 (295)
T 1yb4_A 2 NAMKLGFIG-LGIMGSPMAINLARAG---HQLHVTT-IGPVADELLSL---GAV-------NVETARQVTE---FADIIF 63 (295)
T ss_dssp --CEEEECC-CSTTHHHHHHHHHHTT---CEEEECC-SSCCCHHHHTT---TCB-------CCSSHHHHHH---TCSEEE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCC---CEEEEEc-CHHHHHHHHHc---CCc-------ccCCHHHHHh---cCCEEE
Confidence 457999998 8999999999999999 8898888 76666555432 111 1123445555 789999
Q ss_pred Ecc
Q 022280 82 NCA 84 (300)
Q Consensus 82 h~a 84 (300)
-+.
T Consensus 64 ~~v 66 (295)
T 1yb4_A 64 IMV 66 (295)
T ss_dssp ECC
T ss_pred EEC
Confidence 876
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0018 Score=54.03 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=49.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|+| +|.+|+++++.|++.| ++|++..|++++...+.+.++ +. ..+ ++.+.++ ++|+||
T Consensus 128 ~~~~v~iiG-aG~~g~aia~~L~~~g---~~V~v~~r~~~~~~~l~~~~g--~~-----~~~--~~~~~~~---~aDiVi 191 (275)
T 2hk9_A 128 KEKSILVLG-AGGASRAVIYALVKEG---AKVFLWNRTKEKAIKLAQKFP--LE-----VVN--SPEEVID---KVQVIV 191 (275)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHHT---CEEEEECSSHHHHHHHTTTSC--EE-----ECS--CGGGTGG---GCSEEE
T ss_pred CCCEEEEEC-chHHHHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHcC--Ce-----eeh--hHHhhhc---CCCEEE
Confidence 358999999 5899999999999999 789999998666665554432 21 221 1222333 799999
Q ss_pred Eccccc
Q 022280 82 NCAALS 87 (300)
Q Consensus 82 h~a~~~ 87 (300)
++....
T Consensus 192 ~atp~~ 197 (275)
T 2hk9_A 192 NTTSVG 197 (275)
T ss_dssp ECSSTT
T ss_pred EeCCCC
Confidence 987643
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.013 Score=50.00 Aligned_cols=111 Identities=14% Similarity=-0.033 Sum_probs=67.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh----hhc--CCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL----LDA--LPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~----~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
+++|.|+|+ |.+|+.++..|+..|.- .+|++.+.+++..... .+. +..... +.. -.|.+ . +.+
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~g~~-~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~-i~~-t~d~~---~----~~d 89 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMKDLA-DEVALVDVMEDKLKGEMMDLEHGSLFLHTAK-IVS-GKDYS---V----SAG 89 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHHCCC-SEEEEECSCHHHHHHHHHHHHHHGGGSCCSE-EEE-ESSSC---S----CSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHHhhhhhhcccCCe-EEE-cCCHH---H----hCC
Confidence 579999998 99999999999999931 2788888875433321 111 111111 111 02222 1 238
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
.|+||-+||...... ....+.+..|+.-. ..+.+.+.+.+.. .++.+|
T Consensus 90 aDiVIitaG~p~kpG--~tR~dll~~N~~I~-k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 90 SKLVVITAGARQQEG--ESRLNLVQRNVNIF-KFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp CSEEEECCSCCCCSS--CCTTGGGHHHHHHH-HHHHHHHHHHCTTCEEEECS
T ss_pred CCEEEEeCCCCCCCC--CCHHHHHHhhHHHH-HHHHHHHHhhCCCceEEeCC
Confidence 999999999754322 13345566776555 3777777776554 455555
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0041 Score=50.91 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL 42 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~ 42 (300)
.+|+|.|+| +|.+|+++++.|++.| ++|++.+|+++.
T Consensus 18 ~~~kIgiIG-~G~mG~alA~~L~~~G---~~V~~~~r~~~~ 54 (245)
T 3dtt_A 18 QGMKIAVLG-TGTVGRTMAGALADLG---HEVTIGTRDPKA 54 (245)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESCHHH
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCC---CEEEEEeCChhh
Confidence 468999997 9999999999999999 899999988654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0042 Score=53.64 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+.+|||+|+ |.+|...++.+...| .+|+++++++++.+.+. +++.... + .+.+.+. + ++|+||
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~~-~lGa~~v-~----~~~~~~~---~---~~D~vi 239 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMG---AEVSVFARNEHKKQDAL-SMGVKHF-Y----TDPKQCK---E---ELDFII 239 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTT---CEEEEECSSSTTHHHHH-HTTCSEE-E----SSGGGCC---S---CEEEEE
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHH-hcCCCee-c----CCHHHHh---c---CCCEEE
Confidence 3678999997 999999999999999 89999998877766443 3443222 2 3433322 1 799999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
+++|.
T Consensus 240 d~~g~ 244 (348)
T 3two_A 240 STIPT 244 (348)
T ss_dssp ECCCS
T ss_pred ECCCc
Confidence 99873
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0031 Score=53.16 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=47.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+|+|.|.| .|.+|+.+++.|++.| ++|++.+|+++....+.+. ++. . ..+..+.++ ++|+||.
T Consensus 5 ~m~i~iiG-~G~~G~~~a~~l~~~g---~~V~~~~~~~~~~~~~~~~---g~~-~------~~~~~~~~~---~~D~vi~ 67 (299)
T 1vpd_A 5 TMKVGFIG-LGIMGKPMSKNLLKAG---YSLVVSDRNPEAIADVIAA---GAE-T------ASTAKAIAE---QCDVIIT 67 (299)
T ss_dssp -CEEEEEC-CSTTHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHT---TCE-E------CSSHHHHHH---HCSEEEE
T ss_pred cceEEEEC-chHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHC---CCe-e------cCCHHHHHh---CCCEEEE
Confidence 36899999 7999999999999999 8899998886655554432 122 1 112344555 6899998
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+..
T Consensus 68 ~v~ 70 (299)
T 1vpd_A 68 MLP 70 (299)
T ss_dssp CCS
T ss_pred ECC
Confidence 864
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0074 Score=53.26 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++++|+|+| +|.+|+.+++.+.+.| ++|++++ .++.... ++.+....+..|..|.+.+.++.+ ++|+|+
T Consensus 23 ~~~~I~ilG-gG~lg~~l~~aa~~lG---~~v~~~d-~~~~p~~---~~ad~~~~~~~~~~d~~~l~~~a~---~~d~i~ 91 (403)
T 3k5i_A 23 NSRKVGVLG-GGQLGRMLVESANRLN---IQVNVLD-ADNSPAK---QISAHDGHVTGSFKEREAVRQLAK---TCDVVT 91 (403)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHHHT---CEEEEEE-STTCTTG---GGCCSSCCEESCTTCHHHHHHHHT---TCSEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEE-CCCCcHH---HhccccceeecCCCCHHHHHHHHH---hCCEEE
Confidence 467999999 5789999999999999 8999888 5332211 111211236788888888877776 688876
Q ss_pred E
Q 022280 82 N 82 (300)
Q Consensus 82 h 82 (300)
-
T Consensus 92 ~ 92 (403)
T 3k5i_A 92 A 92 (403)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0041 Score=53.13 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++|+|.|.| .|.+|..+++.|++.| ++|++.+|++++...+.+. ++.. ..++.++.+ ..|+||
T Consensus 30 ~~~~I~iIG-~G~mG~~~a~~l~~~G---~~V~~~dr~~~~~~~l~~~---g~~~-------~~~~~e~~~---~aDvVi 92 (320)
T 4dll_A 30 YARKITFLG-TGSMGLPMARRLCEAG---YALQVWNRTPARAASLAAL---GATI-------HEQARAAAR---DADIVV 92 (320)
T ss_dssp CCSEEEEEC-CTTTHHHHHHHHHHTT---CEEEEECSCHHHHHHHHTT---TCEE-------ESSHHHHHT---TCSEEE
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCC---CeEEEEcCCHHHHHHHHHC---CCEe-------eCCHHHHHh---cCCEEE
Confidence 357999998 7999999999999999 8999999987666655433 2221 122444554 788888
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
-+..
T Consensus 93 ~~vp 96 (320)
T 4dll_A 93 SMLE 96 (320)
T ss_dssp ECCS
T ss_pred EECC
Confidence 7753
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0065 Score=51.43 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=59.4
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCc--eeeecCCCCCchhhhhhcCCC------ceeEEEeecCCchhHHHHHHhcC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPY--DVAATHHSTPLPQLLLDALPH------SFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~--~v~~~~r~~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
|+|.|+|+ |.+|+.++..|+..| + +|++.++++++.......+.+ ... +.. .+. +.+.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g---~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~-i~~--~~~-------~a~~ 66 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRG---SCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTR-VWH--GGH-------SELA 66 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCE-EEE--ECG-------GGGT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC---CCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeE-EEE--CCH-------HHhC
Confidence 58999997 999999999999999 6 899999875433322111111 112 111 121 1233
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
+.|+||.+++...... . ...+....|+.... .+++.+.+.... .++.+|
T Consensus 67 ~aDvVIi~~~~~~~~g-~-~r~dl~~~n~~i~~-~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 67 DAQVVILTAGANQKPG-E-SRLDLLEKNADIFR-ELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp TCSEEEECC--------------CHHHHHHHHH-HHHHHHHHHCSSSEEEECS
T ss_pred CCCEEEEcCCCCCCCC-C-cHHHHHHhHHHHHH-HHHHHHHHhCCCeEEEEec
Confidence 8999999997543211 1 12234455555443 667766665443 444444
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0045 Score=51.88 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=47.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
.|+|.|.| .|.+|+.+++.|++.| ++|++.+|++++...+.+. ++. . .+++.++.+ +.|+||-
T Consensus 1 s~~i~iIG-~G~mG~~~a~~l~~~G---~~V~~~dr~~~~~~~~~~~---g~~-----~--~~~~~~~~~---~aDvvi~ 63 (287)
T 3pef_A 1 SQKFGFIG-LGIMGSAMAKNLVKAG---CSVTIWNRSPEKAEELAAL---GAE-----R--AATPCEVVE---SCPVTFA 63 (287)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSGGGGHHHHHT---TCE-----E--CSSHHHHHH---HCSEEEE
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCC---CeEEEEcCCHHHHHHHHHC---CCe-----e--cCCHHHHHh---cCCEEEE
Confidence 37899999 7999999999999999 8999999987776665543 111 1 123445555 6788887
Q ss_pred cc
Q 022280 83 CA 84 (300)
Q Consensus 83 ~a 84 (300)
+.
T Consensus 64 ~v 65 (287)
T 3pef_A 64 ML 65 (287)
T ss_dssp CC
T ss_pred Ec
Confidence 64
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0029 Score=54.05 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=62.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-------CCceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-------PHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
+++|.|+|| |.+|+.++..|+..|. .+|++.+++++++......+ ..... +.. -+| + +. +.
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~--~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~-i~~-t~d---~-~a---l~ 71 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNL--GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK-VSG-SNT---Y-DD---LA 71 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCC-EEE-ECC---G-GG---GT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcE-EEE-CCC---H-HH---hC
Confidence 579999997 9999999999999993 28888888866544221111 11111 111 022 2 12 33
Q ss_pred CCCEEEEcccccCccccc---cChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 76 QPDVVVNCAALSVPRVCE---NDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~---~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
+.|+||.+++........ ..-......|+.-. ..+++.+.+.... .++.+|
T Consensus 72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIM-IEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHH-HHHHHHHHHHCTTSEEEECS
T ss_pred CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEec
Confidence 899999999854221110 00122344444333 2666666654443 444444
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0048 Score=53.66 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=49.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhh-ccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~-~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~ 79 (300)
+.+|||+||+|.+|...++.+.. .| .+|+++++++++.+.+ .+++.. ...|..+ ++.+.+... +++|+
T Consensus 172 g~~VlV~Ga~G~vG~~a~qlak~~~g---~~Vi~~~~~~~~~~~~-~~lGad---~vi~~~~--~~~~~v~~~~~~g~Dv 242 (363)
T 4dvj_A 172 APAILIVGGAGGVGSIAVQIARQRTD---LTVIATASRPETQEWV-KSLGAH---HVIDHSK--PLAAEVAALGLGAPAF 242 (363)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHCC---SEEEEECSSHHHHHHH-HHTTCS---EEECTTS--CHHHHHHTTCSCCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhcC---CEEEEEeCCHHHHHHH-HHcCCC---EEEeCCC--CHHHHHHHhcCCCceE
Confidence 46899999999999999988876 57 8999999876555443 334322 2234433 233333322 36999
Q ss_pred EEEccc
Q 022280 80 VVNCAA 85 (300)
Q Consensus 80 vih~a~ 85 (300)
||.++|
T Consensus 243 vid~~g 248 (363)
T 4dvj_A 243 VFSTTH 248 (363)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 999977
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.011 Score=51.71 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=50.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
||+|+|+|+ |.+|+.+++.|.+.| ++|++++..+..... .+.+ .++..|..|.+.+.++.+ ++|.|+.
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G---~~v~~~~~~~~~~~~---~~~~--~~~~~~~~d~~~l~~~~~---~~d~v~~ 68 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMG---FYVIVLDPTPRSPAG---QVAD--EQIVAGFFDSERIEDLVK---GSDVTTY 68 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESSTTCTTG---GGSS--EEEECCTTCHHHHHHHHH---TCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCCCCchh---hhCc--eEEECCCCCHHHHHHHHh---cCCEEEe
Confidence 579999996 789999999999999 888887765433211 1111 235678888887777764 8999886
Q ss_pred c
Q 022280 83 C 83 (300)
Q Consensus 83 ~ 83 (300)
.
T Consensus 69 ~ 69 (380)
T 3ax6_A 69 D 69 (380)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0053 Score=55.32 Aligned_cols=76 Identities=12% Similarity=0.232 Sum_probs=50.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|.+|+|.|+| .|.+|.++++.|++.| ++|++.+|+++..+.+.+....... +.-..+++++.+.+.++|+|
T Consensus 2 ~~~~kIgiIG-lG~MG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~g~~g~~-----i~~~~s~~e~v~~l~~aDvV 72 (484)
T 4gwg_A 2 NAQADIALIG-LAVMGQNLILNMNDHG---FVVCAFNRTVSKVDDFLANEAKGTK-----VVGAQSLKEMVSKLKKPRRI 72 (484)
T ss_dssp -CCBSEEEEC-CSHHHHHHHHHHHHTT---CCEEEECSSTHHHHHHHHTTTTTSS-----CEECSSHHHHHHTBCSSCEE
T ss_pred CCCCEEEEEC-hhHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHhcccCCCc-----eeccCCHHHHHhhccCCCEE
Confidence 4578999999 8999999999999999 8999999998777666543111111 10012234445444457777
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|-+..
T Consensus 73 il~Vp 77 (484)
T 4gwg_A 73 ILLVK 77 (484)
T ss_dssp EECSC
T ss_pred EEecC
Confidence 66543
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0074 Score=51.89 Aligned_cols=97 Identities=16% Similarity=0.064 Sum_probs=54.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+++|.|.||||++|+.|++.|.++.+...++..+.-+...-..+. +.. .....-|+.. ++ +.++|+||-
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~--~~~-~~~~~~~~~~-~~-------~~~~Dvvf~ 69 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA--FRG-QEIEVEDAET-AD-------PSGLDIALF 69 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE--ETT-EEEEEEETTT-SC-------CTTCSEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee--ecC-CceEEEeCCH-HH-------hccCCEEEE
Confidence 468999999999999999988887432145554432211101000 111 1111112221 11 238999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ 130 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (300)
|.+.... ..++..+.+.|+ ++|=.|+..
T Consensus 70 a~~~~~s-------------------~~~a~~~~~~G~-~vID~Sa~~ 97 (344)
T 3tz6_A 70 SAGSAMS-------------------KVQAPRFAAAGV-TVIDNSSAW 97 (344)
T ss_dssp CSCHHHH-------------------HHHHHHHHHTTC-EEEECSSTT
T ss_pred CCChHHH-------------------HHHHHHHHhCCC-EEEECCCcc
Confidence 8763210 255566666777 677777753
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0024 Score=54.57 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+.+|||+||+|.+|...++.+...| .+|+++.++ ++ ..+..+++.. ...|..+.+.+.+. ..++|+||
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~G---a~vi~~~~~-~~-~~~~~~lGa~---~~i~~~~~~~~~~~---~~g~D~v~ 220 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKG---TTVITTASK-RN-HAFLKALGAE---QCINYHEEDFLLAI---STPVDAVI 220 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEECH-HH-HHHHHHHTCS---EEEETTTSCHHHHC---CSCEEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcC---CEEEEEecc-ch-HHHHHHcCCC---EEEeCCCcchhhhh---ccCCCEEE
Confidence 36789999999999999999999999 888888754 22 3333333322 23455554423322 24899999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
++.|
T Consensus 221 d~~g 224 (321)
T 3tqh_A 221 DLVG 224 (321)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9987
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0029 Score=51.88 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=48.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc----eeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY----DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~----~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
+|+|.|.| .|.+|+.+++.|++.| + +|++.+|++++...+.+..+ +. .. .+..+..+ +.|
T Consensus 2 ~~~i~iIG-~G~mG~~~a~~l~~~g---~~~~~~V~~~~r~~~~~~~~~~~~g--~~-----~~--~~~~e~~~---~aD 65 (247)
T 3gt0_A 2 DKQIGFIG-CGNMGMAMIGGMINKN---IVSSNQIICSDLNTANLKNASEKYG--LT-----TT--TDNNEVAK---NAD 65 (247)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTT---SSCGGGEEEECSCHHHHHHHHHHHC--CE-----EC--SCHHHHHH---HCS
T ss_pred CCeEEEEC-ccHHHHHHHHHHHhCC---CCCCCeEEEEeCCHHHHHHHHHHhC--CE-----Ee--CChHHHHH---hCC
Confidence 57899999 9999999999999999 6 89999998776665544321 11 11 12344555 689
Q ss_pred EEEEcc
Q 022280 79 VVVNCA 84 (300)
Q Consensus 79 ~vih~a 84 (300)
+||-+.
T Consensus 66 vVilav 71 (247)
T 3gt0_A 66 ILILSI 71 (247)
T ss_dssp EEEECS
T ss_pred EEEEEe
Confidence 999876
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0032 Score=53.55 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=64.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhc--cCCCceeeecCCCCCchhhhhhcCCC-------ceeEEEeecCCchhHHHHHHhc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEI--EGKPYDVAATHHSTPLPQLLLDALPH-------SFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~--g~~~~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
|+|.|+|+ |.+|..++..|+.. | .+|++.+++++........+.+ ... +.. -+|. ++ +
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g---~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~-i~~-t~d~---~~----l 67 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLA---RELVLLDVVEGIPQGKALDMYESGPVGLFDTK-VTG-SNDY---AD----T 67 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCC---SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCE-EEE-ESCG---GG----G
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCC---CEEEEEeCChhHHHHHHHhHHhhhhcccCCcE-EEE-CCCH---HH----H
Confidence 58999997 99999999999985 6 7899999987655543211101 111 111 0232 22 2
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
.+.|+||-+++..... .......+..|+.... .+++.+.+.... .++.+|
T Consensus 68 ~~aDvViiav~~p~~~--g~~r~dl~~~n~~i~~-~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 68 ANSDIVIITAGLPRKP--GMTREDLLMKNAGIVK-EVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp TTCSEEEECCSCCCCT--TCCHHHHHHHHHHHHH-HHHHHHHHHCSSCEEEECC
T ss_pred CCCCEEEEeCCCCCCC--CCCHHHHHHHHHHHHH-HHHHHHHHhCCCcEEEEEc
Confidence 3899999998743211 1113344555655443 677776665443 555554
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.015 Score=48.86 Aligned_cols=110 Identities=14% Similarity=0.003 Sum_probs=69.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhc---CCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDA---LPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|||-|+|+ |.||+.++-.|+.++.- -++.+.+..++.... +.+. ++.... +.+ -.|++ .+.+
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~-~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~-i~~-~~d~~-------~~~~ 69 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDV-DEIALVDIAEDLAVGEAMDLAHAAAGIDKYPK-IVG-GADYS-------LLKG 69 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCC-SEEEEECSSHHHHHHHHHHHHHHHGGGTCCCE-EEE-ESCGG-------GGTT
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCC-CEEEEEeCCCCcchhhhhhhhcccccCCCCCe-Eec-CCCHH-------HhCC
Confidence 68999995 99999999999988753 468888776433221 1111 111122 111 11222 2238
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCe-EEEee
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL-LIHLS 127 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~-~v~~S 127 (300)
.|+||-.||....+. ...++.+..|..-. +.+.+.+.+...+- ++.+|
T Consensus 70 aDvVvitAG~prkpG--mtR~dLl~~Na~I~-~~i~~~i~~~~p~aivlvvs 118 (294)
T 2x0j_A 70 SEIIVVTAGLARKPG--MTRLDLAHKNAGII-KDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp CSEEEECCCCCCCSS--SCHHHHHHHHHHHH-HHHHHHHHTTSTTCEEEECS
T ss_pred CCEEEEecCCCCCCC--CchHHHHHHHHHHH-HHHHHHHHhcCCceEEEEec
Confidence 999999999764332 24566788887766 38888888876654 44444
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0018 Score=55.46 Aligned_cols=111 Identities=13% Similarity=0.044 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC------CCceeEEEeecCCchhHHHHHHhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL------PHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
+++||.|+|| |.+|+.++-.|+..+.- .++++.+..++++......+ ...+. +..| +.+ .++
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~-i~~~--~~~----a~~--- 75 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIA-QEIGIVDIFKDKTKGDAIDLSNALPFTSPKK-IYSA--EYS----DAK--- 75 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHTTGGGSCCCE-EEEC--CGG----GGG---
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCC-CEEEEEeCCchHhHHHHHHHHHHHHhcCCeE-EEEC--CHH----HhC---
Confidence 3579999998 99999999999888842 37888888654443221111 11222 2222 221 233
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEee
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLS 127 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~S 127 (300)
+.|+||.+++...... ..-...+..|+.... .+.+.+.+.... .++.+|
T Consensus 76 ~aDvVii~ag~~~k~g--~~R~dl~~~n~~i~~-~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 76 DADLVVITAGAPQKPG--ETRLDLVNKNLKILK-SIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp GCSEEEECCCCC-------CHHHHHHHHHHHHH-HHHHHHHHHTCCSEEEECS
T ss_pred CCCEEEEcCCCCCCCC--CCHHHHHHHHHHHHH-HHHHHHHHHCCCeEEEEeC
Confidence 8999999998643221 123345666666553 777777776553 555554
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0052 Score=53.80 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=50.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecC--CchhHH-HHHHhcC--CC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK--SGSGFD-AVALKFG--QP 77 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~-~~~~~~~--~~ 77 (300)
+.+|||+| +|.+|...++.+...|. .+|+++++++++.+.+. +++. . ...|.. +.+++. .+.+..+ ++
T Consensus 196 g~~VlV~G-aG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~~~-~lGa--~-~vi~~~~~~~~~~~~~v~~~~~g~g~ 268 (380)
T 1vj0_A 196 GKTVVIQG-AGPLGLFGVVIARSLGA--ENVIVIAGSPNRLKLAE-EIGA--D-LTLNRRETSVEERRKAIMDITHGRGA 268 (380)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTB--SEEEEEESCHHHHHHHH-HTTC--S-EEEETTTSCHHHHHHHHHHHTTTSCE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHcCC--ceEEEEcCCHHHHHHHH-HcCC--c-EEEeccccCcchHHHHHHHHhCCCCC
Confidence 57899999 89999999999999982 28999998866554443 3332 2 223443 122333 3333222 69
Q ss_pred CEEEEccc
Q 022280 78 DVVVNCAA 85 (300)
Q Consensus 78 d~vih~a~ 85 (300)
|+||+++|
T Consensus 269 Dvvid~~g 276 (380)
T 1vj0_A 269 DFILEATG 276 (380)
T ss_dssp EEEEECSS
T ss_pred cEEEECCC
Confidence 99999987
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
|---|
Probab=96.18 E-value=0.014 Score=52.17 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEe-------ecCCchhHHHHHHhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV-------DLKSGSGFDAVALKF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~ 74 (300)
||++|||+|+ |.+|..+++.+.+.| +++++++..++...... .+.+. ++.. |..|.+.+.++.++.
T Consensus 1 m~k~ilI~g~-g~~~~~~~~a~~~~G---~~vv~v~~~~~~~~~~~-~~ad~--~~~~~p~~~~~~~~d~~~l~~~~~~~ 73 (449)
T 2w70_A 1 MLDKIVIANR-GEIALRILRACKELG---IKTVAVHSSADRDLKHV-LLADE--TVCIGPAPSVKSYLNIPAIISAAEIT 73 (449)
T ss_dssp CCSEEEECCC-HHHHHHHHHHHHHHT---CEEEEEEEGGGTTCHHH-HHSSE--EEEEECSSGGGTTTCHHHHHHHHHHH
T ss_pred CCceEEEeCC-cHHHHHHHHHHHHcC---CeEEEEeccccccCchh-hhCCE--EEEcCCCCccccccCHHHHHHHHHHc
Confidence 3679999995 789999999999999 88887764322211111 11121 1222 566666677766655
Q ss_pred CCCCEEEEcc
Q 022280 75 GQPDVVVNCA 84 (300)
Q Consensus 75 ~~~d~vih~a 84 (300)
++|.|+-.-
T Consensus 74 -~~d~v~~~~ 82 (449)
T 2w70_A 74 -GAVAIHPGY 82 (449)
T ss_dssp -TCCEEECCS
T ss_pred -CCCEEEECC
Confidence 899987653
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.011 Score=51.90 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++++|||+|++ .++..+++.+.+.| +++++++.......... ..+ .++..|..|.+.+.++.+.. ++|.|
T Consensus 5 ~~~~~ilI~g~g-~~~~~~~~a~~~~G---~~~v~v~~~~~~~~~~~--~ad--~~~~~~~~d~~~l~~~~~~~-~~d~v 75 (403)
T 4dim_A 5 YDNKRLLILGAG-RGQLGLYKAAKELG---IHTIAGTMPNAHKPCLN--LAD--EISYMDISNPDEVEQKVKDL-NLDGA 75 (403)
T ss_dssp -CCCEEEEECCC-GGGHHHHHHHHHHT---CEEEEEECSSCCHHHHH--HCS--EEEECCTTCHHHHHHHTTTS-CCSEE
T ss_pred cCCCEEEEECCc-HhHHHHHHHHHHCC---CEEEEEcCCCCCCcchh--hCC--eEEEecCCCHHHHHHHHHHc-CCCEE
Confidence 356899999965 47999999999999 88888865321212111 112 23567888888777777665 89998
Q ss_pred EEc
Q 022280 81 VNC 83 (300)
Q Consensus 81 ih~ 83 (300)
+-.
T Consensus 76 ~~~ 78 (403)
T 4dim_A 76 ATC 78 (403)
T ss_dssp ECC
T ss_pred EeC
Confidence 853
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.015 Score=50.91 Aligned_cols=72 Identities=19% Similarity=0.329 Sum_probs=52.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+|+|||+|+ |.+|..+++.+.+.| ++|++++..+..... ...+ ..+..|..|.+.+.++.++. ++|+|+.
T Consensus 11 ~~~ili~g~-g~~~~~~~~a~~~~G---~~v~~~~~~~~~~~~---~~~d--~~~~~~~~d~~~l~~~~~~~-~~d~v~~ 80 (391)
T 1kjq_A 11 ATRVMLLGS-GELGKEVAIECQRLG---VEVIAVDRYADAPAM---HVAH--RSHVINMLDGDALRRVVELE-KPHYIVP 80 (391)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHTTT---CEEEEEESSTTCGGG---GGSS--EEEECCTTCHHHHHHHHHHH-CCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CEEEEEECCCCCchh---hhcc--ceEECCCCCHHHHHHHHHHc-CCCEEEE
Confidence 579999986 789999999999999 888888776543211 1111 23566778877777777665 8999987
Q ss_pred cc
Q 022280 83 CA 84 (300)
Q Consensus 83 ~a 84 (300)
.-
T Consensus 81 ~~ 82 (391)
T 1kjq_A 81 EI 82 (391)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 300 | ||||
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 4e-33 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-25 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 6e-24 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 1e-23 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 4e-21 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-20 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 5e-20 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 7e-20 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 9e-18 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 2e-17 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 2e-16 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 2e-16 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 4e-16 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 3e-15 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 3e-15 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 5e-14 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 2e-11 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 1e-09 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 4e-09 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 2e-08 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 4e-08 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 9e-07 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 2e-06 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 6e-06 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 7e-06 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 7e-06 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 2e-05 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-05 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 3e-05 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 4e-05 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 4e-05 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 4e-05 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 5e-05 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 6e-05 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 1e-04 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 1e-04 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 3e-04 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 3e-04 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 6e-04 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 6e-04 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 7e-04 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 8e-04 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 8e-04 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 0.001 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 0.001 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 0.002 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 0.002 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 0.003 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 0.003 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 0.003 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 0.003 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 0.003 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 0.003 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (305), Expect = 4e-33
Identities = 65/319 (20%), Positives = 116/319 (36%), Gaps = 42/319 (13%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+KR+L+ GG G++G HL L ++V + + H + +L
Sbjct: 1 RKRILITGGAGFVGSHLTDKLMM---DGHEVTVVDN---FFTGRKRNVEHWIGHENFELI 54
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
+ D V + + D + + A+ + P +P + N +L N L
Sbjct: 55 NH---DVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTL-NMLGLAKRVGAR- 109
Query: 123 LIHLSTDQVYEGVKSFYKEEDE------IAPVNVYGKSKVAAEKFIYEKCS----NFAIL 172
L+ ST +VY + + ED I P Y + K AE Y +
Sbjct: 110 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 169
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTN 230
R +GP+ + + +I L +GE + + + R YV D+V ++AL N
Sbjct: 170 RIFNTFGPRMHMNDGRVVSN-FILQAL-QGEPLTVYGSGSQTRAFQYVSDLVNGLVALMN 227
Query: 231 RWLSED------------KQMQLLLNVGGPDRVSRVQMAEVDRGVQSPADISMDITKLVQ 278
+S + QL+ N+ G ++ + P DI K
Sbjct: 228 SNVSSPVNLGNPEEHTILEFAQLIKNLVGSG----SEIQFLSEAQDDPQKRKPDIKKAKL 283
Query: 279 TLNIDP-VTYKDGVKLTLA 296
L +P V ++G+ +
Sbjct: 284 MLGWEPVVPLEEGLNKAIH 302
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 102 bits (254), Expect = 1e-25
Identities = 62/343 (18%), Positives = 128/343 (37%), Gaps = 63/343 (18%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL-LLDALPHS--FVFFDVDL 61
++L+ GG G++G +++ + I+ V T L L + S + F D+
Sbjct: 2 KILITGGAGFIGSAVVRHI--IKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADI 59
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINV------PSSLVNWLSSF 115
+ + + QPD V++ AA S P + + N+ + S+
Sbjct: 60 CDSAEITRI-FEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSAL 118
Query: 116 TENKENL--LIHLSTDQVYEGVKSFYKEEDEI-----------APVNVYGKSKVAAEKFI 162
E+K+N H+STD+VY + + E+ + AP + Y SK +++ +
Sbjct: 119 GEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLV 178
Query: 163 YEKCSNF----AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPV 216
+ + S YGP P+ L I + L +G+ + + + R +
Sbjct: 179 RAWRRTYGLPTIVTNCSNNYGPYHF---PEKLIPLVILNAL-EGKPLPIYGKGDQIRDWL 234
Query: 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQM-------------------A 257
YV D + + + + + N+GG + + +
Sbjct: 235 YVEDHARALHMVVTEGKAGE-----TYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYRE 289
Query: 258 EVDRGVQSPADI---SMDITKLVQTLNIDP-VTYKDGVKLTLA 296
++ P ++D K+ + L P T++ G++ T+
Sbjct: 290 QITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVE 332
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 97.2 bits (241), Expect = 6e-24
Identities = 61/319 (19%), Positives = 109/319 (34%), Gaps = 38/319 (11%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-------STPLPQLLLDALPHS--FV 55
R+LV GG G++G H ++ L Y + + L +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLA---GAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLR 58
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
F D++ +A + D +V+ AA S NV + L
Sbjct: 59 FVHGDIRD---AGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQ-TLLQCA 114
Query: 116 TENKENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCS----NFA 170
+ ++H+ST+QVY + S + E + P + Y SK ++ +
Sbjct: 115 VDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVR 174
Query: 171 ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVK-IILA 227
I R YGP P+ L ++ ++L G + + D R V+ D + I L
Sbjct: 175 ITRCCNNYGPYQH---PEKLIPLFVTNLL-DGGTLPLYGDGANVREWVHTDDHCRGIALV 230
Query: 228 LTN------RWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGVQSPADI---SMDITKLVQ 278
L + ++ G + V + S+D K+ +
Sbjct: 231 LAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIER 290
Query: 279 TLNIDP-VTYKDGVKLTLA 296
L P V++ DG+ T+
Sbjct: 291 ELGYRPQVSFADGLARTVR 309
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 96.8 bits (240), Expect = 1e-23
Identities = 51/272 (18%), Positives = 95/272 (34%), Gaps = 27/272 (9%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDV------AATHHSTPLPQLLLDALPHS--FV 55
K L+ G TG G +L + L E K Y+V A++ ++ + + D + F
Sbjct: 2 KVALITGVTGQDGSYLAEFLLE---KGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFH 58
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSS--LVNWLS 113
DL S + L+ QPD V N A+S V P+ ++ + L+ +
Sbjct: 59 LHYGDLSDTSNLTRI-LREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIR 117
Query: 114 SFTENKENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF--- 169
K+ ST ++Y V+ KE P + Y +K+ A ++
Sbjct: 118 FLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMY 177
Query: 170 -AILRSSIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC-RCPVYVRDVVKIIL 226
P + + V + + + + + + R + +D VK+
Sbjct: 178 ACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQW 237
Query: 227 ALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
+ + ED + + S Q E
Sbjct: 238 MMLQQEQPED------FVIATGVQYSVRQFVE 263
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (221), Expect = 4e-21
Identities = 50/344 (14%), Positives = 101/344 (29%), Gaps = 52/344 (15%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA---------THHSTPLPQLLLDALPHS 53
+ L+ G TG G +L + L E K Y+V T L + + +
Sbjct: 1 RNVALITGITGQDGSYLAEFLLE---KGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGN 57
Query: 54 FVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSL--VNW 111
DL + + + ++ A V + + ++ +L ++
Sbjct: 58 MKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKI-SFDLAEYTADVDGVGTLRLLDA 116
Query: 112 LSSFTENKENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF- 169
+ + ST ++Y V+ KE P + YG +K+ A + +
Sbjct: 117 VKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYN 176
Query: 170 ---AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKI 224
P+ + + + + + + R + +D V+
Sbjct: 177 LFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEA 236
Query: 225 ILALTNRWLSED--------------------------KQMQLLLNVGGPDRVSRVQMAE 258
+ + ED N G + +
Sbjct: 237 MWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVT 296
Query: 259 VDRGVQSPADI---SMDITKLVQTLNIDP-VTYKDGVKLTLAAE 298
VD P ++ D TK Q LN P V + + V+ + A+
Sbjct: 297 VDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHAD 340
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 88.1 bits (217), Expect = 1e-20
Identities = 52/324 (16%), Positives = 95/324 (29%), Gaps = 39/324 (12%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA--THHSTPLPQLLLDALPHSFVFFDVDL 61
K ++V GG G++G + + + V L L D+
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYN-NHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDI 61
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVN----------- 110
+ V + D +V+ AA S NDP + N +
Sbjct: 62 AD---AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF 118
Query: 111 WLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF- 169
S E +L + EG + E P + Y +K A++ + +F
Sbjct: 119 HHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFG 178
Query: 170 ---AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKI 224
I S YGP I I G K + + + R ++ D
Sbjct: 179 VKATISNCSNNYGPYQHIEKFIPRQITNI----LAGIKPKLYGEGKNVRDWIHTNDHSTG 234
Query: 225 ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMA-------EVDRGVQSPADI---SMDIT 274
+ A+ + + + V + + D ++D +
Sbjct: 235 VWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDAS 294
Query: 275 KLVQTLNIDP--VTYKDGVKLTLA 296
KL L P + +G++ T+
Sbjct: 295 KLRDELGWTPQFTDFSEGLEETIQ 318
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.6 bits (213), Expect = 5e-20
Identities = 61/338 (18%), Positives = 108/338 (31%), Gaps = 50/338 (14%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA----THHSTPLPQLLLDALPHSFVFFDV 59
K VLV GG GY+G H + L E YD ++ + L H F++V
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIE---NGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEV 58
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
DL G + V ++ + D V++ A L P N+ ++V N
Sbjct: 59 DLCDRKGLEKVFKEY-KIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNV 117
Query: 120 ENLLIHLSTDQVYEGVKSF----YKEEDEIAPVNVYGKSKVAAEKFIYEKCS------NF 169
+ S + + EE + P N YG +K A E + + + F
Sbjct: 118 SKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKF 177
Query: 170 AILRSSIIYGP-------QTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRD 220
AILR G + +P +L + + EK+ F D + R +RD
Sbjct: 178 AILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 237
Query: 221 VVKIILALTNRWLSEDKQMQ--------LLLNVGGPDRVSRVQMAE-------------- 258
+ ++ + N+G + ++
Sbjct: 238 YIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKV 297
Query: 259 VDRGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTL 295
R +++ + + L + +D K
Sbjct: 298 TGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLW 335
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 85.8 bits (211), Expect = 7e-20
Identities = 58/331 (17%), Positives = 106/331 (32%), Gaps = 44/331 (13%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH----SFVFFDVD 60
RVLV GG+GY+G H L + +DV + + +L + F + D
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQ---NGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+++ + + D V++ A L P NV +L +S+
Sbjct: 59 IRNEALMTEILHDH-AIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL-RLISAMRAANV 116
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIA--PVNVYGKSKVAAEKFIYEKC-----SNFAILR 173
I S+ VY E P + YGKSK+ E+ + + + A+LR
Sbjct: 117 KNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 174 SSIIYGP-------QTISPVPKSLPIQWIDSVLSKGEKVEFF--HDECRCPVYVRDVVKI 224
G + +P +L + + + + F VRD + +
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 225 ILALTNRWLSEDKQMQL----LLNVGGPDRVSRVQMAE--------------VDRGVQSP 266
+ ++ +K + N+G S + + R
Sbjct: 237 MDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDL 296
Query: 267 ADISMDITKLVQTLNIDP-VTYKDGVKLTLA 296
D +K + LN T + + T
Sbjct: 297 PAYWADASKADRELNWRVTRTLDEMAQDTWH 327
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 80.0 bits (196), Expect = 9e-18
Identities = 61/322 (18%), Positives = 106/322 (32%), Gaps = 27/322 (8%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPY--DVAATHHSTPLPQLLLDALPHSFVFFD 58
K L+ G G++G +LL+ L +++ K D AT H L ++ + F
Sbjct: 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFK 73
Query: 59 VDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
D D V++ AAL NDP ++ + N+ L N L + +
Sbjct: 74 FIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFL-NMLIAARDA 132
Query: 119 KENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFI--YEKCSNF--AILR 173
K + ++ Y E+ P++ Y +K E + + +C F LR
Sbjct: 133 KVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLR 192
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNR 231
++G + + I S + +G+ V D R Y+ + V+ L
Sbjct: 193 YFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATA 252
Query: 232 WLSEDKQMQ----------------LLLNVGGPDRVSRVQMAEVDRGVQSPADISMDITK 275
L Q+ L + + D DI+K
Sbjct: 253 GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISK 312
Query: 276 LVQTLNIDP-VTYKDGVKLTLA 296
+ L P GV L +
Sbjct: 313 AAKLLGYAPKYDVSAGVALAMP 334
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 79.0 bits (193), Expect = 2e-17
Identities = 51/325 (15%), Positives = 99/325 (30%), Gaps = 36/325 (11%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDV---------AATHHSTPLPQLLLDALPHS 53
+K L+ G TG G +L + L K Y+V T + +
Sbjct: 1 RKIALITGITGQDGSYLTEFLLG---KGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKAL 57
Query: 54 FVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLS 113
DL S + +PD V N AA S V PD + +L +
Sbjct: 58 MKLHYADLTDASSLRRW-IDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEA 116
Query: 114 ----SFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF 169
+ + + +++ E P + Y SK AA + +
Sbjct: 117 VRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 176
Query: 170 ----AILRSSIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC-RCPVYVRDVVK 223
P + + V + + + K+ + + R + D V+
Sbjct: 177 GLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVE 236
Query: 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQM---------AEVDRGVQSPADI---SM 271
+ + + +D + + + E+D+ PA++
Sbjct: 237 AMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQG 296
Query: 272 DITKLVQTLNIDP-VTYKDGVKLTL 295
D +K + L P V ++ VK+ +
Sbjct: 297 DASKAKEVLGWKPQVGFEKLVKMMV 321
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 76.2 bits (186), Expect = 2e-16
Identities = 41/316 (12%), Positives = 95/316 (30%), Gaps = 23/316 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+ LV G TG G +L + L E + + + A S +L + + D D+
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD 60
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+K +V A V + + + + + L + +
Sbjct: 61 ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGL--GVTHLLEAIRQFSPETR 118
Query: 124 IHLSTDQVYEGVKS--FYKEEDEIAPVNVYGKSKVAAEKFIY----EKCSNFAILRSSII 177
+ ++ G+ E P + YG +K+ + +
Sbjct: 119 FYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNH 178
Query: 178 YGPQT-ISPVPKSLPIQWIDSVLSKGEKVEFFHDEC-RCPVYVRDVVKIILAL------- 228
P I V + + L K +++ + + R + D V+ + +
Sbjct: 179 ESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKAD 238
Query: 229 -----TNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGVQSPADISMDITKLVQTLNID 283
T + Q+ G D +++ + + K + L
Sbjct: 239 DYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWK 298
Query: 284 P-VTYKDGVKLTLAAE 298
P + + +++ + A+
Sbjct: 299 PRTSLDELIRMMVEAD 314
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 75.7 bits (185), Expect = 2e-16
Identities = 49/332 (14%), Positives = 107/332 (32%), Gaps = 60/332 (18%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL 61
+K+RV + G G +G + + L + + L+L +++L
Sbjct: 1 AKQRVFIAGHRGMVGSAIRRQLEQ---RGDVE-----------LVLRTRD------ELNL 40
Query: 62 KSGSGFDAVALKFGQPDVVVNCA-ALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+ D V A + P + N+ N + + +N
Sbjct: 41 LDSRAVHDF-FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIES-NIIHAAHQNDV 98
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEI------APVNVYGKSKVAAEKFIYEKCS----NFA 170
N L+ L + +Y + E E+ Y +K+A K ++
Sbjct: 99 NKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYR 158
Query: 171 ILRSSIIYGP-----QTISPVPKSLPIQWIDSVLSKGEKVEFF------HDECRCPVYVR 219
+ + +YGP + S V +L ++ ++ K V + +
Sbjct: 159 SVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAA 218
Query: 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE-VDRGVQSPADI--------- 269
+ ++ WL + M +NVG + ++A+ + + V +
Sbjct: 219 ASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDG 278
Query: 270 ----SMDITKLVQTLNIDP-VTYKDGVKLTLA 296
+D+T+L L ++ + G+ T
Sbjct: 279 TPRKLLDVTRL-HQLGWYHEISLEAGLASTYQ 309
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.1 bits (183), Expect = 4e-16
Identities = 56/336 (16%), Positives = 105/336 (31%), Gaps = 43/336 (12%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-------PHS 53
M++K VLV GG GY+G H + L E P + H++ L ++L S
Sbjct: 1 MAEK-VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRS 59
Query: 54 FVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLS 113
F ++D+ + K+ V++ A L P +N+ ++
Sbjct: 60 VEFEEMDILDQGALQRLFKKY-SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEI 118
Query: 114 SFTEN-KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS----- 167
K + +T + N YGKSK E+ I + C
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 168 NFAILRSSIIYGP-------QTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYV 218
N +LR G + +P +L + + E + F + + V
Sbjct: 179 NAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 219 RDVVKIILALTNRWLSEDKQM----QLLLNVGGPDRVSRVQMAE-----------VDRGV 263
RD + ++ + K + N+G S +QM +
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 264 QSPADI---SMDITKLVQTLNIDP-VTYKDGVKLTL 295
+ D+ + + + L + +
Sbjct: 299 RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLW 334
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 72.7 bits (177), Expect = 3e-15
Identities = 58/326 (17%), Positives = 110/326 (33%), Gaps = 45/326 (13%)
Query: 1 MSKK-RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV 59
S+ ++ + G G++ H+ + L + + V A+ + F V
Sbjct: 12 PSENLKISITGAGGFIASHIARRLKH---EGHYVIASDW---KKNEHMTEDMFCDEFHLV 65
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
DL+ + D V N AA S + N N + + N
Sbjct: 66 DLRV---MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING 122
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEI--------APVNVYGKSKVAAEKFIYEKCS---- 167
+ S+ +Y K + P + +G K+A E+
Sbjct: 123 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGI 182
Query: 168 NFAILRSSIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKI 224
I R IYGP T + P + + ++ E + D + R ++ + V+
Sbjct: 183 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEG 242
Query: 225 ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV----------DRGVQSPADI---SM 271
+L LT E +N+G + VS +MAE+ + P + +
Sbjct: 243 VLRLTKSDFREP------VNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNS 296
Query: 272 DITKLVQTLNIDP-VTYKDGVKLTLA 296
D + + L P + K+G+++T
Sbjct: 297 DNNLIKEKLGWAPNMRLKEGLRITYF 322
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 72.2 bits (175), Expect = 3e-15
Identities = 57/304 (18%), Positives = 113/304 (37%), Gaps = 43/304 (14%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
++L+ G G LG+ + + L K +V D+D+ +
Sbjct: 3 KILITGANGQLGREIQKQLKG---KNVEV------------------IPTDVQDLDITNV 41
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ +P+VV+NCAA + CE D A IN ++++ E + I
Sbjct: 42 LAVNKF-FNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQI 100
Query: 125 HLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTIS 184
E K E DE+ P + YGK+K+ E F+ + I+R++ +YG
Sbjct: 101 STDYVFDGE-AKEPITEFDEVNPQSAYGKTKLEGENFVKALNPKYYIVRTAWLYGDGNN- 158
Query: 185 PVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWL----------- 233
++ + ++ ++++ HD+ P D+ +++L + +
Sbjct: 159 ------FVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKNYGTFHCTCKGI 212
Query: 234 -SEDKQMQLLLNVGGPD-RVSRVQMAEVDRGVQSPADISMDITKLVQTLNIDPVTYKDGV 291
S + + G D +V+ E R + P + L T +K+ +
Sbjct: 213 CSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITREWKESL 272
Query: 292 KLTL 295
K +
Sbjct: 273 KEYI 276
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 68.8 bits (166), Expect = 5e-14
Identities = 56/316 (17%), Positives = 112/316 (35%), Gaps = 50/316 (15%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
+L+ G TG +G L + L+ +A HS F D +
Sbjct: 2 NILLFGKTGQVGWELQRSLAP---VGNLIALDVHSK---------------EFCGDFSNP 43
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
G ++ +PDV+VN AA + E++P+ A +N S + E ++
Sbjct: 44 KGVAET-VRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIA-KAANETGAWVVH 101
Query: 125 HLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTIS 184
+ + ++E D +P+NVYGK+K+A EK + + C I R+S +Y + +
Sbjct: 102 YSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGNN 161
Query: 185 PVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLN 244
+ + + + + + +D+ P + L++ + L
Sbjct: 162 F------AKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHL 215
Query: 245 VGG------------------------PDRVSRVQMAEVDRGVQSPADISMDITKLVQTL 280
V G ++ V + P + ++ K +
Sbjct: 216 VAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNF 275
Query: 281 NIDPVTYKDGVKLTLA 296
++ ++ GVK L
Sbjct: 276 DLILPQWELGVKRMLT 291
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 61.7 bits (148), Expect = 2e-11
Identities = 50/335 (14%), Positives = 103/335 (30%), Gaps = 48/335 (14%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-STPLPQLLLDALPHS--FVFFDVDL 61
++L+ GG G+LG +L + D+ + S L L F F D+
Sbjct: 2 KLLITGGCGFLGSNLASFALS---QGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDI 58
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
++ + + K+ PD + A ++P INV +L + N
Sbjct: 59 RNKNDVTRLITKY-MPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNC 117
Query: 122 LLIHLSTDQVYE-----------------GVKSFYKEEDEIAPVNVYGKSKVAAEKFIYE 164
+I+ ST++VY + Y E ++ + YG SK AA++++ +
Sbjct: 118 NIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLD 177
Query: 165 KCSNFAILRSSIIYGPQTI--------SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216
F + + + ++ + + +
Sbjct: 178 YARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRD 237
Query: 217 YV---RDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV------------SRVQMAEVDR 261
+ + AL N + + + ++ +
Sbjct: 238 VLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPV 297
Query: 262 GVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTL 295
DI K+ ++ P V+ KDGV+
Sbjct: 298 RESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMY 332
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 56.4 bits (134), Expect = 1e-09
Identities = 49/337 (14%), Positives = 91/337 (27%), Gaps = 50/337 (14%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP----LPQLLLDALPHSFVFFDV 59
VLV G G++ H+++ L E Y V T S L + P F V
Sbjct: 12 SLVLVTGANGFVASHVVEQLLE---HGYKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 60 -DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVP------------- 105
D+ +D V + + + S P ++N
Sbjct: 69 EDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFV 128
Query: 106 --SSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFI- 162
SS V+ L + L S + E D + VY SK AE
Sbjct: 129 LTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAW 188
Query: 163 -----YEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217
+ + + G W+ S+ + + V
Sbjct: 189 KFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVS 248
Query: 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV---------------DRG 262
D+ + L E ++ G + D+G
Sbjct: 249 AVDIGLLHLGCLVLPQIERRR-----VYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQG 303
Query: 263 VQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLAAE 298
+ +++++L + ++ +K + +E
Sbjct: 304 QDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSE 340
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 54.4 bits (129), Expect = 4e-09
Identities = 34/259 (13%), Positives = 78/259 (30%), Gaps = 32/259 (12%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDV-AATHHSTPLPQLLLDALPHSFVFFDVD 60
S+ R+L++G TGY+G+H+ + + + ST L SF +
Sbjct: 2 SRSRILLIGATGYIGRHVAKASLD---LGHPTFLLVRESTASSNSEKAQLLESFKASGAN 58
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+ GS D +L +V V + + ++ V + + S F +
Sbjct: 59 IVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGND-- 116
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
+ P + K + I + + + S+ G
Sbjct: 117 ------------------VDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAG- 157
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQ 240
+SL + + + + V D+ + + + +K +
Sbjct: 158 ----YFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLY 213
Query: 241 LLLNVGGPDRVSRVQMAEV 259
+ +S ++ +
Sbjct: 214 ---LRLPANTLSLNELVAL 229
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 52.1 bits (123), Expect = 2e-08
Identities = 33/256 (12%), Positives = 72/256 (28%), Gaps = 25/256 (9%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
K RVL+VGGTGY+G+ ++ + + + + F L
Sbjct: 3 KSRVLIVGGTGYIGKRIVNASIS---LGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 59
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S D L V V +AL+ + + + + + E
Sbjct: 60 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLK----------LVEAIKEAGNIK 109
Query: 123 LIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQT 182
S + E + P ++ K + I + + S++ G
Sbjct: 110 RFLPSEFGMDP-----DIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGY-- 162
Query: 183 ISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLL 242
+ + + V DV + + + +K +
Sbjct: 163 --FAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKT---M 217
Query: 243 LNVGGPDRVSRVQMAE 258
+ +S+ ++ +
Sbjct: 218 YIRPPMNILSQKEVIQ 233
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 51.0 bits (120), Expect = 4e-08
Identities = 26/256 (10%), Positives = 61/256 (23%), Gaps = 18/256 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
VLV G +G GQ + + L E + S + +
Sbjct: 4 PTVLVTGASGRTGQIVYKKLKE-GSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSI 62
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
F + V P P + + +
Sbjct: 63 NPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA 122
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
V + K AE+++ + + + I+R+ +
Sbjct: 123 GVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDK--- 179
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ ++ K +++ V DV ++ + L ++
Sbjct: 180 -------EGGVRELLVGKDDELLQTD---TKTVPRADVAEVCIQA----LLFEEAKNKAF 225
Query: 244 NVGGPDRVSRVQMAEV 259
++G + +
Sbjct: 226 DLGSKPEGTSTPTKDF 241
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 9e-07
Identities = 23/228 (10%), Positives = 55/228 (24%), Gaps = 40/228 (17%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
M+ K++ + G TG G L + Y+V + V
Sbjct: 1 MAVKKIAIFGATGQTGLTTLAQAVQ---AGYEVTVLVRDSS------RLPSEGPRPAHVV 51
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+ V D V+ D + + + N +++ +
Sbjct: 52 VGDVLQAADVDKTVAGQDAVIVLLG--------TRNDLSPTTVMSEGARNIVAAMKAHGV 103
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
+ ++ ++ + + + + K + E + +
Sbjct: 104 DKVVACTSAFLL------WDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVAVM------- 150
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILAL 228
P D L+ V + D+ +L
Sbjct: 151 ----------PPHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRC 188
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 2e-06
Identities = 36/245 (14%), Positives = 70/245 (28%), Gaps = 34/245 (13%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
M K V ++G +G G+ LL+ + E +G V + V
Sbjct: 12 MQNKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGRRKLTFDEEAYKNVNQEVVD--- 67
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
F+ + + + + ++ L + + +
Sbjct: 68 ------FEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCK 121
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVA-AEKFIYEKCSNFAILRSSIIYG 179
+ + S +Y + K K K +++ R ++
Sbjct: 122 HFNLLSSKGADKS-------------SNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLC 168
Query: 180 PQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQM 239
+ S + L ++ L V V VV+ +L R DKQM
Sbjct: 169 DRQESRPGEWL-VRKFFGSLPDSWAS-------GHSVPVVTVVRAMLNNVVR--PRDKQM 218
Query: 240 QLLLN 244
+LL N
Sbjct: 219 ELLEN 223
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 44.1 bits (104), Expect = 6e-06
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 12/110 (10%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDALPHSFVFFDVDLK 62
K ++ GG +G+ + + + EG D+A P + + L + D+
Sbjct: 6 KLAVITGGANGIGRAIAERFAV-EG--ADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVS 62
Query: 63 SGSG----FDAVALKFGQPDVVVNCAALSVP----RVCENDPDSAMSINV 104
V FG+ D++VN A + + INV
Sbjct: 63 QPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINV 112
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 44.1 bits (104), Expect = 7e-06
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
K VLV GG +G+ + Q + EG VA ++ +A+ +F D++ +
Sbjct: 6 KGVLVTGGARGIGRAIAQAFAR-EG--ALVALCDLRPEGKEVA-EAIGGAFFQVDLEDER 61
Query: 64 G--SGFDAVALKFGQPDVVVNCAALSVP----RVCENDPDSAMSINV 104
+ A G+ DV+VN AA++ P V + + +N+
Sbjct: 62 ERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNL 108
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 44.1 bits (103), Expect = 7e-06
Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
MS V+V G +G L+Q L + + + AT L +
Sbjct: 1 MSPGSVVVTGANRGIGLGLVQQLVK-DKNIRHIIATARDVEKATELKSIKDSRVHVLPLT 59
Query: 61 LKSGSGFDAVALK----FGQP--DVVVNCAALSVPRVCENDPDSA-----MSINVPS 106
+ D K G +++N A + + +P+ A + +N S
Sbjct: 60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTS 116
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 42.6 bits (99), Expect = 2e-05
Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 6/105 (5%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH-SFVFFDV 59
+ K+ +V+ GTG +G L+ + ++ + +
Sbjct: 21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAET 80
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINV 104
+ A V A+ + + + + SI +
Sbjct: 81 A-----DDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEI 120
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 58/372 (15%), Positives = 100/372 (26%), Gaps = 81/372 (21%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDV--------------------AATHHSTP 41
S RVLV GG GY+G H ++ L + + V
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRAL--LRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQ 58
Query: 42 LPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMS 101
D+++ + V + G D VV+ A DP
Sbjct: 59 SDGPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYD 118
Query: 102 INVPSSLVNWLSSFTENKENLLIHL-------STDQVYEGVKSFYKEEDEIAPVNVYGKS 154
NV L + + ++ T + +P + YG+S
Sbjct: 119 NNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGES 178
Query: 155 KVAAEKFIYEKCSNFAI----LRSSIIYG------------------PQTISPVPKSLPI 192
K+ AE+ I + + I LR G P + V +
Sbjct: 179 KLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAP 238
Query: 193 Q---WIDSVLSKGEKVEFFHDEC--------RCPVYVRDVVKIILALTNRWLSEDKQMQL 241
I S +++ F + R V+V D+ + + +
Sbjct: 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKS 298
Query: 242 ----LLNVGGPDRVSRVQMAE--------------VDRGVQSPADISMDITKLVQTLNID 283
+ N+G S ++ E R PA + K + L
Sbjct: 299 KYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWK 358
Query: 284 P-VTYKDGVKLT 294
P + + T
Sbjct: 359 PKYDTLEAIMET 370
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.3 bits (99), Expect = 3e-05
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
R LV G +G+ ++ L G V A + L P VDL
Sbjct: 6 LRALVTGAGKGIGRDTVKALHA-SG--AKVVAVTRTNSDLVSLAKECP-GIEPVCVDLGD 61
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVP----RVCENDPDSAMSINV 104
+ G D++VN AAL + V + D + S+N+
Sbjct: 62 WDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNL 106
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 41.9 bits (98), Expect = 4e-05
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
K VL+ G +G+ L+ ++ EG + A + +A+ V DV +
Sbjct: 6 KAVLITGAAHGIGRATLELFAK-EG--ARLVACDIEEGPLREAAEAVGAHPVVMDVADPA 62
Query: 64 G--SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAM 100
GF G+ D VV+ A ++ P
Sbjct: 63 SVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDW 101
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 41.9 bits (98), Expect = 4e-05
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 11/116 (9%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP----LPQLLLDALPHSFVFFDV 59
+ LV GG+ LG + QGL+E G V + Q L + + F
Sbjct: 6 RVALVTGGSRGLGFGIAQGLAE-AG--CSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 62
Query: 60 DLKSGSG----FDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNW 111
D+ + +AV KFG+ D VVN A ++ E P + +L
Sbjct: 63 DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGT 118
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.3 bits (95), Expect = 4e-05
Identities = 36/230 (15%), Positives = 66/230 (28%), Gaps = 38/230 (16%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL 61
+ KRVL+ G TG G+HLL + E V A L + P + +
Sbjct: 1 TPKRVLLAGATGLTGEHLLDRILS-EPTLAKVIAPARK-ALAEHPRLDNPVGPLAELLPQ 58
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
GS D C ++ + A+ ++P ++
Sbjct: 59 LDGS-----------IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL 107
Query: 122 LLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQ 181
++ L D + K E E + + I R S+++GP+
Sbjct: 108 VVSALGADAKSSIFYNRVKGELE--------------QALQEQGWPQLTIARPSLLFGPR 153
Query: 182 TISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 231
+ I +L + D+ + + L
Sbjct: 154 E-EFRLAEILAAPIARILPGKYH----------GIEACDLARALWRLALE 192
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 41.5 bits (97), Expect = 5e-05
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
K LV GG +G +++ L EG VA + + Q L L +F D+ S
Sbjct: 7 KVALVTGGASGVGLEVVKLLLG-EG--AKVAFSDINEAAGQQLAAELGERSMFVRHDVSS 63
Query: 64 GSG----FDAVALKFGQPDVVVNCAALSVP-RVCENDPD 97
+ AV + G +V+VN A + +P + +
Sbjct: 64 EADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLE 102
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.2 bits (96), Expect = 6e-05
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
K LV GG +G ++ + EG V + + L + + +D+
Sbjct: 7 KVALVSGGARGMGASHVRAMVA-EG--AKVVFGDILDEEGKAMAAELADAARYVHLDVTQ 63
Query: 64 GSG----FDAVALKFGQPDVVVNCAALSVPRVCENDPD 97
+ D FG V+VN A + E+
Sbjct: 64 PAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYAL 101
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDV-AATHHSTPLPQLLLDALPHSFVFFDVDL 61
KK + VVG TG G L++ + + V A H L L A+P+ +F L
Sbjct: 3 KKTIAVVGATGRQGASLIRVAAA---VGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLL 59
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVP 105
+ D + + A + ++ D+A
Sbjct: 60 NNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTI 103
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 40.0 bits (93), Expect = 1e-04
Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 14/161 (8%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
+ K VLV+ + +G+ + LS+ EG +V + + LL H +V D+
Sbjct: 2 IRDKGVLVLAASRGIGRAVADVLSQ-EG--AEVTICARN----EELLKRSGHRYVVCDLR 54
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
D + K + D++V A + + + +L+ +
Sbjct: 55 ----KDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAID---SLFLNMIKIVRN 107
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKF 161
L + + I + +++A F
Sbjct: 108 YLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGF 148
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 39.2 bits (91), Expect = 3e-04
Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 16/114 (14%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+ VL+ GG LG+ L+ EG VA S L + + D++S
Sbjct: 6 EAVLITGGASGLGRALVDRFVA-EG--AKVAVLDKSAERLAELETDHGDNVLGIVGDVRS 62
Query: 64 GSG----FDAVALKFGQPDVVVNCAALSVP---------RVCENDPDSAMSINV 104
+FG+ D ++ A + + D INV
Sbjct: 63 LEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINV 116
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (90), Expect = 3e-04
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G +G+ +Q L G V A + L+ P VDL
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHA-TG--ARVVAVSRTQADLDSLVRECP-GIEPVCVDLGD 63
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAM 100
+ G D++VN AA+++ + A
Sbjct: 64 WEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAF 100
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 38.4 bits (89), Expect = 6e-04
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDL 61
K ++ GGT +G + E EG V T + + + ++ P FF D
Sbjct: 7 KVAIITGGTLGIGLAIATKFVE-EG--AKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDS 63
Query: 62 KSGSG----FDAVALKFGQPDVVVNCAALSVPRVCENDPD 97
G FDA FG +VN A ++V + E
Sbjct: 64 SDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTT 103
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 38.1 bits (88), Expect = 6e-04
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP---HSFVFFDVD 60
K ++ G +G+ + + G V + + ++D + D
Sbjct: 12 KCAIITGAGAGIGKEIAITFAT-AG--ASVVVSDINADAANHVVDEIQQLGGQAFACRCD 68
Query: 61 LKSGSGFDA----VALKFGQPDVVVNCAALSVPRVCENDPD 97
+ S A K G+ D++VN A P+ +
Sbjct: 69 ITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMA 109
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 38.1 bits (88), Expect = 7e-04
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 15/113 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP---HSFVFFDVD 60
LV GG+ +G +++ L+ G V + L D
Sbjct: 9 CTALVTGGSRGIGYGIVEELAS-LG--ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCD 65
Query: 61 LKSGSG----FDAVALKFGQP-DVVVNCAALSVPR----VCENDPDSAMSINV 104
L S S + VA F +++VN A + + + D MSIN
Sbjct: 66 LSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINF 118
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 38.0 bits (88), Expect = 8e-04
Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 7/101 (6%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
K V++ GG LG + G V L + + +D+
Sbjct: 6 KTVIITGGARGLGAEAARQAVA-AG--ARVVLADVLDEEGAATARELGDAARYQHLDVTI 62
Query: 64 GSG----FDAVALKFGQPDVVVNCAALSVPRVCENDPDSAM 100
+FG D +VN A +S E +
Sbjct: 63 EEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERF 103
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 37.8 bits (87), Expect = 8e-04
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
K +LV G +G+ L + EG + A L + AL + D+
Sbjct: 6 KTILVTGAASGIGRAALDLFAR-EG--ASLVAVDREERLLAEAVAALEAEAIAVVADVSD 62
Query: 64 GSG----FDAVALKFGQPDVVVNCAALSVPRVCENDPDSAM 100
F +FG+ V + A ++ + N P A
Sbjct: 63 PKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAW 103
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (87), Expect = 0.001
Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 16/114 (14%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFD 58
+ LV G +G +G + + L + +G V + + L P + + +
Sbjct: 11 RLALVTGASGGIGAAVARALVQ-QG--LKVVGCARTVGNIEELAAECKSAGYPGTLIPYR 67
Query: 59 VDLKSGSG----FDAVALKFGQPDVVVNCAALSVP----RVCENDPDSAMSINV 104
DL + F A+ + D+ +N A L+ P + ++NV
Sbjct: 68 CDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNV 121
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.2 bits (86), Expect = 0.001
Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 16/170 (9%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL------PHSFVFF 57
K ++ G + +G+ + EG V T + + +
Sbjct: 6 KVAIITGSSNGIGRATAVLFAR-EG--AKVTITGRHAERLEETRQQILAAGVSEQNVNSV 62
Query: 58 DVDLKSGSG----FDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSL--VNW 111
D+ + +G KFG+ D++VN A ++P ++ +A SI + +N
Sbjct: 63 VADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPD-SQSKTGTAQSIESYDATLNLNL 121
Query: 112 LSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKF 161
S K+ + ST + S Y +K A +++
Sbjct: 122 RSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQY 171
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 37.1 bits (84), Expect = 0.002
Identities = 48/327 (14%), Positives = 103/327 (31%), Gaps = 41/327 (12%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHS--FVFFDVD 60
KRV V G TG+ G L L V + P L + + D
Sbjct: 8 GKRVFVTGHTGFKGGWLSLWLQT---MGATVKGYSLTAPTVPSLFETARVADGMQSEIGD 64
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
++ +++ QP++V + AA + R+ ++P S NV ++ +
Sbjct: 65 IRD-QNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGV 123
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEI--APVNVYGKSKVAAEKFIYEKC------------ 166
++++++D+ Y+ + + + + Y SK AE
Sbjct: 124 KAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQH 183
Query: 167 -SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKII 225
+ A +R+ + G + + + + R +V + +
Sbjct: 184 GTAVATVRAGNVIGGGDW--ALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGY 241
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDRGVQS--------------PADI-- 269
L L + ++ + N G D + V++ V+ P +
Sbjct: 242 LLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHY 301
Query: 270 -SMDITKLVQTLNIDP-VTYKDGVKLT 294
+D +K L P ++
Sbjct: 302 LKLDCSKAKMQLGWHPRWNLNTTLEYI 328
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 36.2 bits (83), Expect = 0.002
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 11/106 (10%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG- 64
+V + G LSE G + VA S L +A ++ +
Sbjct: 3 AIVTNVKHFGGMGSALRLSE-AG--HTVACHDESFKQKDEL-EAFAETYPQLKPMSEQEP 58
Query: 65 -SGFDAVALKFGQPDVVVNCAALSVP-----RVCENDPDSAMSINV 104
+AV +GQ DV+V+ + + D A+
Sbjct: 59 AELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQ 104
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (84), Expect = 0.003
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 16/110 (14%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFD 58
K LV G +G+ + L +G VA + AL P +F
Sbjct: 4 KVALVTGAAQGIGRAFAEALLL-KG--AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 60
Query: 59 VDLKSGSG----FDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINV 104
D+ F V FG+ D++VN A E + + + IN+
Sbjct: 61 CDVADQQQLRDTFRKVVDHFGRLDILVNNAG----VNNEKNWEKTLQINL 106
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 36.5 bits (84), Expect = 0.003
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL------PHSFVFF 57
K V++ G + +G+ ++ EG +V T S+ + +
Sbjct: 6 KTVIITGSSNGIGRTTAILFAQ-EG--ANVTITGRSSERLEETRQIILKSGVSEKQVNSV 62
Query: 58 DVDLKSGSG----FDAVALKFGQPDVVVNCAALSVP 89
D+ + G ++ +FG+ DV+VN A ++P
Sbjct: 63 VADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIP 98
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 36.2 bits (83), Expect = 0.003
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 19/117 (16%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL------PHSFVFF 57
K V++ G + +G+ ++ EG V T + + +
Sbjct: 5 KSVIITGSSNGIGRSAAVIFAK-EG--AQVTITGRNEDRLEETKQQILKAGVPAEKINAV 61
Query: 58 DVDLKSGSG----FDAVALKFGQPDVVVNCAALSVPRVCEN------DPDSAMSINV 104
D+ SG + KFG+ D++VN A ++ N +N
Sbjct: 62 VADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNF 118
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.1 bits (83), Expect = 0.003
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH-----SFVFFD 58
K VLV GGT +G +++ + G + + L + D
Sbjct: 9 KTVLVTGGTKGIGHAIVEEFAG-FG--AVIHTCARNEYELNECLSKWQKKGFQVTGSVCD 65
Query: 59 VDLKSG--SGFDAVALKF-GQPDVVVNCAALSVP----RVCENDPDSAMSINV 104
L+ V+ F G+ D+++N D +S N+
Sbjct: 66 ASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNL 118
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.5 bits (82), Expect = 0.003
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDV 33
RV+V+GG GY G LS+ K Y+V
Sbjct: 2 SRVMVIGGDGYCGWATALHLSK---KNYEV 28
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 35.8 bits (82), Expect = 0.003
Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 15/120 (12%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDL 61
K ++ GG G +G+ + G V + Q + + + P F D+
Sbjct: 7 KVAIITGGAGGIGETTAKLFVR-YG--AKVVIADIADDHGQKVCNNIGSPDVISFVHCDV 63
Query: 62 KSGSG----FDAVALKFGQPDVVVNCAALSVPR------VCENDPDSAMSINVPSSLVNW 111
D K G+ D++ + D M INV + +
Sbjct: 64 TKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVA 123
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.96 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.96 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.95 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.95 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.94 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.93 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.93 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.92 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.92 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.92 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.92 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.92 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.91 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.91 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.91 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.91 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.91 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.91 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.91 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.91 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.91 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.91 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.9 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.9 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.9 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.9 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.9 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.9 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.9 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.9 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.9 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.89 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.89 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.89 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.89 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.89 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.89 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.89 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.89 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.88 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.88 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.88 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.88 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.87 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.87 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.87 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.87 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.86 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.86 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.86 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.86 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.86 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.85 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.83 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.83 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.83 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.83 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.81 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.8 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.8 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.78 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.76 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.76 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.76 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.75 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.74 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.73 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.71 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.7 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.7 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.64 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.63 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.55 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.54 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.25 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.11 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.06 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.98 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.94 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.94 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.89 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.79 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.76 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.75 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.75 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.72 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.72 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.67 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.67 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.66 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.65 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.65 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.64 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.58 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.55 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.47 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.43 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.37 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.36 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.36 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.33 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.3 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.29 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.29 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.26 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.24 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.22 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.22 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.19 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 97.13 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 97.11 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.09 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.09 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.08 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.07 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.04 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.02 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.01 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.95 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.93 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.93 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.88 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.85 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.85 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.84 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.81 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.8 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.8 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.76 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.75 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.75 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.72 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.7 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.7 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.7 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.69 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.64 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.62 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.6 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.59 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.44 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 96.35 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.32 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.26 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.23 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.22 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.18 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 96.17 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.14 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.13 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.1 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.09 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 96.07 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.03 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.96 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.93 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 95.91 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.9 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.85 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.78 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 95.78 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.71 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.71 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.66 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.66 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.63 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 95.59 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.56 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.51 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.47 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.38 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.19 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.18 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 94.94 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 94.93 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 94.92 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.8 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.7 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 94.64 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.42 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.37 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.34 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 94.32 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.31 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.19 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.16 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.14 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 94.06 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 93.86 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 93.84 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 93.84 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.83 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 93.79 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 93.76 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.73 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 93.71 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 93.63 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.62 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.61 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 93.6 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 93.54 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.49 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.36 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.29 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 93.28 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.23 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.2 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 93.17 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 93.13 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 93.02 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.9 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 92.87 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.84 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 92.64 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.38 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.36 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.26 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 92.2 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.15 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 92.0 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.86 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 91.72 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 91.64 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 91.6 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 91.39 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.9 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.74 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.7 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 90.61 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 90.34 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 90.11 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 90.05 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 89.87 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 89.84 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 89.8 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.62 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 89.58 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.58 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 89.1 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 89.09 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 88.76 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.63 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 88.46 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 88.12 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.04 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 87.97 | |
| d2o14a2 | 208 | Hypothetical protein YxiM {Bacillus subtilis [TaxI | 87.97 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 87.87 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.61 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 87.55 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 87.33 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 87.24 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.09 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 87.0 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 86.74 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 86.62 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 86.22 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 86.17 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 85.91 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 85.69 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 85.09 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 84.93 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 84.9 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 84.53 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 84.32 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 84.11 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 83.71 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 83.48 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 83.39 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 83.31 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 82.19 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 81.26 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 81.24 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 81.22 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 81.21 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 81.05 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 80.91 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.59 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 80.34 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-49 Score=348.31 Aligned_cols=285 Identities=19% Similarity=0.133 Sum_probs=223.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-----hhhhhh---cCCCceeEEEeecCCchhHHHHHHhc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-----PQLLLD---ALPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-----~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
.|++||||||||||++|+++|+++| ++|++++|.... ...+.. ....++.++++|++|.++++..++..
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLEKG---YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV 77 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCc---CEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhcc
Confidence 3789999999999999999999999 899999996432 111111 12457888999999999999999877
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC---eEEEeeccccccCCCC-CCCCCCCCCCCCh
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN---LLIHLSTDQVYEGVKS-FYKEEDEIAPVNV 150 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~---~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~ 150 (300)
++|+|||+|+......+..++..++++|+.||. +++++|++.+++ +|||+||.++||.... +++|+++..|.++
T Consensus 78 -~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~-nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~ 155 (357)
T d1db3a_ 78 -QPDEVYNLGAMSHVAVSFESPEYTADVDAMGTL-RLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSP 155 (357)
T ss_dssp -CCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHH-HHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSH
T ss_pred -CCCEEEEeecccccchhhhCHHHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCCCCCCh
Confidence 899999999998777777889999999999996 999999987653 7999999999987655 8999999999999
Q ss_pred hHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHH
Q 022280 151 YGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKI 224 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~ 224 (300)
|+.||.++|++++.+ +.+++++||+++|||.............++.....++......| ++.|+|+|++|+|++
T Consensus 156 Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a 235 (357)
T d1db3a_ 156 YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 235 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHH
Confidence 999999999988765 45889999999999964322222223344444554444444555 468999999999999
Q ss_pred HHHHHhccccccccccceeeecCCCccCHHHHHHhhc-------------------------------------------
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDR------------------------------------------- 261 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~------------------------------------------- 261 (300)
++.++++.. ++ +||+++++.+|+.|+++...
T Consensus 236 ~~~~~~~~~--~~----~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (357)
T d1db3a_ 236 QWMMLQQEQ--PE----DFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPR 309 (357)
T ss_dssp HHHTTSSSS--CC----CEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGG
T ss_pred HHHHHhCCC--CC----eEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEeeccc
Confidence 999998742 23 89999999999999988100
Q ss_pred --cCCCCCccccChHHHHHhcCCCc-CCHHHHHHHHHhhh
Q 022280 262 --GVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLAAE 298 (300)
Q Consensus 262 --~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~ 298 (300)
++.......+|++|++++|||+| ++++++|+++++++
T Consensus 310 ~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~ 349 (357)
T d1db3a_ 310 YFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVAND 349 (357)
T ss_dssp GCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHH
T ss_pred cCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 00111223569999999999999 89999999998764
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=5.4e-48 Score=334.21 Aligned_cols=280 Identities=21% Similarity=0.279 Sum_probs=226.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCC------C--CCchhhhhh-cCCCceeEEEeecCCchhHHHHHHhc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH------S--TPLPQLLLD-ALPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r------~--~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
|||||||||||||++|++.|+++| ++|.+..| . ......+.. .....+.++++|+.+.........
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g---~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-- 75 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGA---YPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR-- 75 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTS---CTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT--
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhcccc--
Confidence 689999999999999999999999 44444332 1 111111111 124578889999999876554433
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHH
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGK 153 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~ 153 (300)
.+|.|+|+|+.........++...+++|+.|+. +++++|.+.++++|||+||.++|+.... +++|+++..|.+.|+.
T Consensus 76 -~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~-~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~~~~~p~~~Y~~ 153 (322)
T d1r6da_ 76 -GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQ-TLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAA 153 (322)
T ss_dssp -TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHH-HHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHH
T ss_pred -ccceEEeecccccccccccchHHHhhhhHHHHH-HHHHHHHHcCCceEEEeecceeecCCCCCCCCCCCCCCCCCHHHH
Confidence 899999999887666566678888999999997 9999999999999999999999998776 8999999999999999
Q ss_pred HHHHHHHHHHHHc----CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHH
Q 022280 154 SKVAAEKFIYEKC----SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILA 227 (300)
Q Consensus 154 sK~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~ 227 (300)
+|..+|.+++.++ .+++++||++||||++. +..+++.++..+. .++++.++++ +.|+|+|++|+|++++.
T Consensus 154 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~---~~~~i~~~i~~~~-~~~~i~v~~~g~~~r~~i~v~D~a~ai~~ 229 (322)
T d1r6da_ 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQH---PEKLIPLFVTNLL-DGGTLPLYGDGANVREWVHTDDHCRGIAL 229 (322)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCC---TTSHHHHHHHHHH-TTCCEEEETTSCCEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCC---cCcHHHHHHHHHH-cCCCcEEecCCCeEEccEEHHHHHHHHHH
Confidence 9999999987654 57899999999999764 2345566666665 6677887764 68999999999999999
Q ss_pred HHhccccccccccceeeecCCCccCHHHHHH---------------hhccCCCCCccccChHHHHHhcCCCc-CCHHHHH
Q 022280 228 LTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE---------------VDRGVQSPADISMDITKLVQTLNIDP-VTYKDGV 291 (300)
Q Consensus 228 ~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~---------------~~~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l 291 (300)
+++++..+ + +||+++++.+++.|+++ ............+|++|+++.|||+| ++++++|
T Consensus 230 ~~~~~~~~-~----~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~eegI 304 (322)
T d1r6da_ 230 VLAGGRAG-E----IYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGL 304 (322)
T ss_dssp HHHHCCTT-C----EEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHH
T ss_pred HHhCCCCC-C----eeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCCCHHHHH
Confidence 99986543 3 89999999999999888 11112233456789999999999999 8999999
Q ss_pred HHHHhhhc
Q 022280 292 KLTLAAEA 299 (300)
Q Consensus 292 ~~~~~~~~ 299 (300)
+++++||.
T Consensus 305 ~~~i~w~~ 312 (322)
T d1r6da_ 305 ARTVRWYR 312 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999985
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.4e-47 Score=336.46 Aligned_cols=282 Identities=20% Similarity=0.301 Sum_probs=224.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCcee-eecCCCCC--chhhhhhcC-CCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDV-AATHHSTP--LPQLLLDAL-PHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v-~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|||||||||||||++|+++|+++| ++| +++++... ....+.... ..+++++++|++|++.+..+++.. +||+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g---~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-~~d~ 76 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNT---QDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQY-QPDA 76 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHC---SCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhC-CCCE
Confidence 689999999999999999999999 654 44443211 112221111 357889999999999999998877 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhcc---------CCeEEEeeccccccCCCC-C----------C
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK---------ENLLIHLSTDQVYEGVKS-F----------Y 139 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~---------~~~~v~~SS~~~~~~~~~-~----------~ 139 (300)
|||||+......+..+|..++++|+.|+. +++++|++.+ +++||++||..+||.... + .
T Consensus 77 VihlAa~~~~~~~~~~p~~~~~~N~~gt~-nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~ 155 (361)
T d1kewa_ 77 VMHLAAESHVDRSITGPAAFIETNIVGTY-ALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLF 155 (361)
T ss_dssp EEECCSCCCHHHHHHCTHHHHHHHTHHHH-HHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCB
T ss_pred EEECccccchhhHHhCHHHHHHHHHHHHH-HHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCc
Confidence 99999987766667788999999999997 9999998754 458999999999987543 1 3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--Cccc
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECR 213 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 213 (300)
.|.++..|.+.|+.||.++|.++..+ +.+++++||++||||+.. +..+++.++.+++ .++++.++| ++.|
T Consensus 156 ~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~---~~~~i~~~i~~~~-~g~~~~v~g~g~~~r 231 (361)
T d1kewa_ 156 TETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF---PEKLIPLVILNAL-EGKPLPIYGKGDQIR 231 (361)
T ss_dssp CTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC---TTSHHHHHHHHHH-HTCCEEEETTSCCEE
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCC---cCcHHHHHHHHHH-cCCCcEEeCCCCeEE
Confidence 45667788999999999999999764 457899999999999764 2345666777766 566777765 4789
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHh----------------------hccCCCCCcccc
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV----------------------DRGVQSPADISM 271 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~----------------------~~~~~~~~~~~~ 271 (300)
+|+|++|+|+++..++++...+ . +||+++++.+++.|+++. .........+.+
T Consensus 232 ~~i~v~D~a~ai~~~~~~~~~~-~----~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (361)
T d1kewa_ 232 DWLYVEDHARALHMVVTEGKAG-E----TYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAI 306 (361)
T ss_dssp EEEEHHHHHHHHHHHHHHCCTT-C----EEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCB
T ss_pred eCEEHHHHHHHHHHHHhcCCCC-C----eEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeee
Confidence 9999999999999999986543 3 899999999999998870 011123345678
Q ss_pred ChHHHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 272 DITKLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 272 ~~~k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
|++|++++|||+| ++++++|+++++||.
T Consensus 307 d~~k~~~~lgw~P~~~l~e~i~~ti~w~~ 335 (361)
T d1kewa_ 307 DAGKISRELGWKPLETFESGIRKTVEWYL 335 (361)
T ss_dssp CCHHHHHHHCCCCSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999 899999999999973
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-47 Score=333.02 Aligned_cols=289 Identities=20% Similarity=0.206 Sum_probs=227.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc---h-hhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL---P-QLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~---~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|||||||||||||++|++.|+++| ++|++++|.... . .........++.++++|++|.+.+..+++.. +||+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-~~d~ 76 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDH-AIDT 76 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHT-TCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhcc-CCCE
Confidence 679999999999999999999999 899998763221 1 1111112457888999999999999998876 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCC-CCCCCCChhHHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEE-DEIAPVNVYGKSKVA 157 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~-~~~~p~~~Y~~sK~~ 157 (300)
|||+|+......+..++...+++|+.|+. +++++|++.+++++|++||.++|+.... +..|+ ....|.+.|+.+|..
T Consensus 77 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~-nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~ 155 (338)
T d1udca_ 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTL-RLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLM 155 (338)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHHHHHH-HHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHH
T ss_pred EEECCCccchhhHHhCHHHHHHhHHHHHH-HHHHHHHHhCCCEEEecCcceEEccccccccccccccCCCcchHHHHHhh
Confidence 99999987666666788999999999997 9999999999999999999999988765 44444 456789999999999
Q ss_pred HHHHHHHHc-----CCceeEeeeeeeCCCCCC-------CCCCCchHHHHHHHHhcCCceeecc--------CcccCcee
Q 022280 158 AEKFIYEKC-----SNFAILRSSIIYGPQTIS-------PVPKSLPIQWIDSVLSKGEKVEFFH--------DECRCPVY 217 (300)
Q Consensus 158 ~e~~~~~~~-----~~~~ilR~~~v~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~ 217 (300)
.|+++.++. .+++++|++++|||+... ..+..+...++..+...+.++.+.| .+.|+|+|
T Consensus 156 ~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~ 235 (338)
T d1udca_ 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEE
T ss_pred hhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEE
Confidence 999987533 367899999999986431 1123344444444444455676664 34689999
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH--------------hhccCCCCCccccChHHHHHhcCCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE--------------VDRGVQSPADISMDITKLVQTLNID 283 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~--------------~~~~~~~~~~~~~~~~k~~~~lg~~ 283 (300)
++|++.++..+......... .++||+++++.+|+.|+++ ............+|++|++++|||+
T Consensus 236 v~D~~~~~~~~~~~~~~~~~--~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgwk 313 (338)
T d1udca_ 236 VMDLADGHVVAMEKLANKPG--VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWR 313 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCCE--EEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCC
T ss_pred EeehhhhccccccccccccC--cceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCCCCCCCEeeECHHHHHHHHCCC
Confidence 99999998888876443332 4599999999999999998 1111223355678999999999999
Q ss_pred c-CCHHHHHHHHHhhhc
Q 022280 284 P-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 284 p-~~~~~~l~~~~~~~~ 299 (300)
| ++++++|+++++||.
T Consensus 314 p~~~l~egi~~ti~w~~ 330 (338)
T d1udca_ 314 VTRTLDEMAQDTWHWQS 330 (338)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 9 999999999999985
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-47 Score=330.05 Aligned_cols=278 Identities=22% Similarity=0.312 Sum_probs=215.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+|||||||||||||++|+++|+++| ++|+++++............ .....+|+.+.+.++.++. ++|+|||
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g---~~V~~~d~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~---~~d~Vih 71 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG---HEVTVVDNFFTGRKRNVEHW---IGHENFELINHDVVEPLYI---EVDQIYH 71 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCGGGTGGG---TTCTTEEEEECCTTSCCCC---CCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCCcCCHHHHHHh---cCCCceEEEehHHHHHHHc---CCCEEEE
Confidence 5899999999999999999999999 89999887432221111111 1112334444333332332 8999999
Q ss_pred cccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCC-----CCCCCCChhHHHHH
Q 022280 83 CAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEE-----DEIAPVNVYGKSKV 156 (300)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~-----~~~~p~~~Y~~sK~ 156 (300)
+|+......+..++...+++|+.|+. +++++|++.++ ++||+||.++|+.... +++|+ ++..|.+.|+.||.
T Consensus 72 lAa~~~~~~~~~~~~~~~~~Nv~g~~-~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~ 149 (312)
T d2b69a1 72 LASPASPPNYMYNPIKTLKTNTIGTL-NMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKR 149 (312)
T ss_dssp CCSCCSHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHH
T ss_pred CcccCCchhHHhCHHHHHHHHHHHHH-HHHHHHHHcCC-cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHH
Confidence 99987765566788899999999996 99999999887 8999999999997654 66654 45678899999999
Q ss_pred HHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHh
Q 022280 157 AAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTN 230 (300)
Q Consensus 157 ~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~ 230 (300)
++|.+++.+ +.+++++||++||||+..... ..+++.++.+++ .++++.++++ +.++|+|++|++++++.+++
T Consensus 150 ~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~-~~~i~~~i~~~~-~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~ 227 (312)
T d2b69a1 150 VAETMCYAYMKQEGVEVRVARIFNTFGPRMHMND-GRVVSNFILQAL-QGEPLTVYGSGSQTRAFQYVSDLVNGLVALMN 227 (312)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTC-CCHHHHHHHHHH-HTCCEEEESSSCCEEECEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCC-ccHHHHHHHHHH-cCCCeEEeCCCCeeEccEEHHHHHHHHHHHHh
Confidence 999999765 457899999999999865432 345556777666 5677777664 68999999999999999997
Q ss_pred ccccccccccceeeecCCCccCHHHHHH--------------hhccCCCCCccccChHHHHHhcCCCc-CCHHHHHHHHH
Q 022280 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAE--------------VDRGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTL 295 (300)
Q Consensus 231 ~~~~~~~~~~~i~ni~~~~~~s~~e~~~--------------~~~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~ 295 (300)
... .++||+++++.+++.++++ .......+.....|++|++++|||+| ++++++|++++
T Consensus 228 ~~~------~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i 301 (312)
T d2b69a1 228 SNV------SSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAI 301 (312)
T ss_dssp SSC------CSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHH
T ss_pred hcc------CCceEecCCcccchhhHHHHHHHHhCCCCceEECCCCCCCCCeeeECHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 643 2289999999999999888 12223345567789999999999999 89999999999
Q ss_pred hhhc
Q 022280 296 AAEA 299 (300)
Q Consensus 296 ~~~~ 299 (300)
+||.
T Consensus 302 ~w~~ 305 (312)
T d2b69a1 302 HYFR 305 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9984
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.8e-46 Score=325.90 Aligned_cols=287 Identities=20% Similarity=0.205 Sum_probs=230.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch----hhhhhcC----CCceeEEEeecCCchhHHHHHHh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP----QLLLDAL----PHSFVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~----~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~ 73 (300)
++|+|||||||||||++|+++|+++| ++|++++|..... ..+.... ...+.++.+|+.|...+.....
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~- 90 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLD---QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA- 90 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT-
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc---CEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc-
Confidence 46799999999999999999999999 8999998743311 1111111 2457789999999776555544
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhH
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYG 152 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~ 152 (300)
.++.|+|+++......+..++...+++|+.|+. +++++|.+.++++|||+||..+||..+. +++|+++.+|.+.|+
T Consensus 91 --~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~-~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~ 167 (341)
T d1sb8a_ 91 --GVDYVLHQAALGSVPRSINDPITSNATNIDGFL-NMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYA 167 (341)
T ss_dssp --TCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHH-HHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHH
T ss_pred --cccccccccccccccccccCccchhheeehhHH-HHHHHHHhcCCceEEEcccceeeCCCCCCCccCCCCCCCCCcch
Confidence 899999999877666667788899999999997 9999999999999999999999998776 899999999999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEeeeeeeCCCCCCCC-CCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHH
Q 022280 153 KSKVAAEKFIYEKC----SNFAILRSSIIYGPQTISPV-PKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKII 225 (300)
Q Consensus 153 ~sK~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~ 225 (300)
.+|.++|++++.++ .+++++||++|||++..... ...++..++..++ .++++.++|+ +.|+|+|++|+|.++
T Consensus 168 ~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~-~g~~i~~~g~g~~~r~~i~v~D~~~a~ 246 (341)
T d1sb8a_ 168 VTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMI-QGDDVYINGDGETSRDFCYIENTVQAN 246 (341)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHH-HTCCCEEESSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHH-cCCceEEcCCCCEEEEEEEEeccchhh
Confidence 99999999987654 58999999999999765333 2334555555555 5667777764 689999999999999
Q ss_pred HHHHhccccccccccceeeecCCCccCHHHHHHh-------------------hccCCCCCccccChHHHHHhcCCCc-C
Q 022280 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV-------------------DRGVQSPADISMDITKLVQTLNIDP-V 285 (300)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~-------------------~~~~~~~~~~~~~~~k~~~~lg~~p-~ 285 (300)
..++...... .+.+||+++++.+|+.|+++. ............|++|++++|||+| +
T Consensus 247 ~~~~~~~~~~---~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~p~~ 323 (341)
T d1sb8a_ 247 LLAATAGLDA---RNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKY 323 (341)
T ss_dssp HHHHTCCGGG---CSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCCC
T ss_pred hhhhhccccc---cceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHCCCcCC
Confidence 9999875322 134899999999999999880 0111223345689999999999999 9
Q ss_pred CHHHHHHHHHhhhc
Q 022280 286 TYKDGVKLTLAAEA 299 (300)
Q Consensus 286 ~~~~~l~~~~~~~~ 299 (300)
+++++|+++++||.
T Consensus 324 sl~~gi~~ti~wy~ 337 (341)
T d1sb8a_ 324 DVSAGVALAMPWYI 337 (341)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999985
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-45 Score=319.09 Aligned_cols=284 Identities=17% Similarity=0.105 Sum_probs=219.8
Q ss_pred CeE-EEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-----hhhhhh----cCCCceeEEEeecCCchhHHHHHHh
Q 022280 4 KRV-LVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-----PQLLLD----ALPHSFVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 4 ~~i-lItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-----~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (300)
||| ||||||||||++|+++|+++| |+|++++|.... .+.+.. .....++++.+|++|++.+..++..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g---~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 77 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKG---YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINE 77 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCc---CEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhh
Confidence 567 999999999999999999999 999999996432 122111 1134678899999999999999887
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC---CeEEEeeccccccCCCC-CCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE---NLLIHLSTDQVYEGVKS-FYKEEDEIAPVN 149 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~---~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~ 149 (300)
. ++++|+|+|+......+..++...+++|+.|+. ++++++++.++ ++|||+||.++||..+. +++|+++.+|.+
T Consensus 78 ~-~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~-~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~P~~ 155 (347)
T d1t2aa_ 78 V-KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTL-RLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRS 155 (347)
T ss_dssp H-CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHH-HHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCS
T ss_pred c-ccceeeeeeeccccchhhccchhhhhhHHHHHH-HHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCCCCCC
Confidence 7 999999999977665566677888999999997 99999988765 48999999999997655 899999999999
Q ss_pred hhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHH
Q 022280 150 VYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVK 223 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~ 223 (300)
+|+.||.++|+++..+ +.+++++||+++|||..............+.....+..++..+|+ +.|+|+|++|+++
T Consensus 156 ~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~ 235 (347)
T d1t2aa_ 156 PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE 235 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHHH
Confidence 9999999999998765 457899999999999643222111111222233335566666654 6899999999999
Q ss_pred HHHHHHhccccccccccceeeecCCCccCHHHHHHh--------------------------------h---ccCCCCCc
Q 022280 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV--------------------------------D---RGVQSPAD 268 (300)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~--------------------------------~---~~~~~~~~ 268 (300)
++..++++.... .|+++.+...++.+.... . ..+.....
T Consensus 236 a~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~ 309 (347)
T d1t2aa_ 236 AMWLMLQNDEPE------DFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDF 309 (347)
T ss_dssp HHHHHHHSSSCC------CEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCB
T ss_pred HHHHHhhcCCCc------cceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCCCcCE
Confidence 999999985432 588888888888876660 0 00111233
Q ss_pred cccChHHHHHhcCCCc-CCHHHHHHHHHhhh
Q 022280 269 ISMDITKLVQTLNIDP-VTYKDGVKLTLAAE 298 (300)
Q Consensus 269 ~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~ 298 (300)
+.+|++|++++|||+| ++++++|+++++++
T Consensus 310 ~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~ 340 (347)
T d1t2aa_ 310 LQGDCTKAKQKLNWKPRVAFDELVREMVHAD 340 (347)
T ss_dssp CCBCCHHHHHHHCCCCCSCHHHHHHHHHHHH
T ss_pred eeECHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 5679999999999999 89999999998764
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=6.7e-45 Score=314.38 Aligned_cols=285 Identities=15% Similarity=0.088 Sum_probs=226.9
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch--hhhhhc-CCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP--QLLLDA-LPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~--~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|+|||||||||||++|++.|+++| |+|++++|..... ..+... ..+++.++++|++|.+.+...+... .++++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g---~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~~~~ 76 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG---YRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKA-QPQEV 76 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHH-CCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccc-ccccc
Confidence 689999999999999999999999 9999999875321 222111 2356888999999999988888776 89999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCC-eEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAA 158 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~ 158 (300)
+|+|+.........++...++.|+.|+. +++++|++.+++ +|++.||..+|+.... +.+|+++..|.+.|+.+|.++
T Consensus 77 ~~~a~~~~~~~~~~~~~~~~~~n~~g~~-~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~ 155 (321)
T d1rpna_ 77 YNLAAQSFVGASWNQPVTTGVVDGLGVT-HLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYG 155 (321)
T ss_dssp EECCSCCCHHHHTTSHHHHHHHHTHHHH-HHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHH
T ss_pred ccccccccccccccchHHHHhhhhhchH-HHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCccccChhHHHHHHH
Confidence 9999887766666788899999999996 999999998875 7888888888877665 788999999999999999999
Q ss_pred HHHHHHHc----CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHhcc
Q 022280 159 EKFIYEKC----SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 159 e~~~~~~~----~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~ 232 (300)
|++++.++ .+++++||+++|||..........+..++.+...++++....| ++.|+|+|++|+|+++.++++++
T Consensus 156 E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~ 235 (321)
T d1rpna_ 156 HWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQD 235 (321)
T ss_dssp HHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcC
Confidence 99987654 5789999999999975432222223344545454455554454 47899999999999999999886
Q ss_pred ccccccccceeeecCCCccCHHHHHH---------------hhc---cCCCCCccccChHHHHHhcCCCc-CCHHHHHHH
Q 022280 233 LSEDKQMQLLLNVGGPDRVSRVQMAE---------------VDR---GVQSPADISMDITKLVQTLNIDP-VTYKDGVKL 293 (300)
Q Consensus 233 ~~~~~~~~~i~ni~~~~~~s~~e~~~---------------~~~---~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~ 293 (300)
.. +.||+++++..|+.++++ ... ++.....+..|++|++++|||+| ++++++|++
T Consensus 236 ~~------~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~e~i~~ 309 (321)
T d1rpna_ 236 KA------DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRM 309 (321)
T ss_dssp SC------CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHHHH
T ss_pred Cc------CCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCCCHHHHHHH
Confidence 43 279999999999999888 001 11123346679999999999999 899999999
Q ss_pred HHhhhc
Q 022280 294 TLAAEA 299 (300)
Q Consensus 294 ~~~~~~ 299 (300)
|++|+-
T Consensus 310 tv~~~l 315 (321)
T d1rpna_ 310 MVEADL 315 (321)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999863
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=2.9e-44 Score=313.65 Aligned_cols=283 Identities=20% Similarity=0.252 Sum_probs=221.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC--CchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST--PLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
.||+|||||||||||++|+++|+++|++ ++|++.++.. .....+....+.++.++++|++|.+.+..+++ ..+.
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~-v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~---~~~~ 76 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA---KADA 76 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT---TCSE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCC-eEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHh---hhhh
Confidence 4799999999999999999999999954 3455444321 11122222335688999999999988888776 8899
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC-------------CCCCCCCCCC
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK-------------SFYKEEDEIA 146 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~-------------~~~~E~~~~~ 146 (300)
|+|+|+......+..++...+++|+.|+. ++++++...+. ++|++||..+||... ..++|+++..
T Consensus 77 v~~~a~~~~~~~~~~~~~~~~~~N~~g~~-nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~ 154 (346)
T d1oc2a_ 77 IVHYAAESHNDNSLNDPSPFIHTNFIGTY-TLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN 154 (346)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHH-HHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCC
T ss_pred hhhhhhcccccchhhCcccceeeehHhHH-hhhhhhccccc-cccccccceEecccCccccccccccCcccccccCCCCC
Confidence 99999988766666788999999999997 99999998886 899999999998531 1466777888
Q ss_pred CCChhHHHHHHHHHHHHHHc----CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHH
Q 022280 147 PVNVYGKSKVAAEKFIYEKC----SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD 220 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D 220 (300)
|.+.|+.+|.++|.+++.++ .+++++||++||||+.. .......++.... .+.++.+++ ++.|+|+|++|
T Consensus 155 p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~---~~~~~~~~i~~~~-~~~~~~i~~~g~~~r~~i~v~D 230 (346)
T d1oc2a_ 155 PSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQH---IEKFIPRQITNIL-AGIKPKLYGEGKNVRDWIHTND 230 (346)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCC---TTSHHHHHHHHHH-HTCCCEEETTSCCEEECEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCC---ccchhHHHHHHHH-cCCceeEeCCCCccccccchhh
Confidence 99999999999999887654 47899999999998753 2233444554444 555566665 47899999999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCccCHHHHHH---------------hhccCCCCCccccChHHHHHhcCCCc-
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE---------------VDRGVQSPADISMDITKLVQTLNIDP- 284 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~---------------~~~~~~~~~~~~~~~~k~~~~lg~~p- 284 (300)
+|++++.+++++..++ .||+++++..++.++++ ..........+.+|++|++++|||+|
T Consensus 231 ~a~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~P~ 305 (346)
T d1oc2a_ 231 HSTGVWAILTKGRMGE-----TYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQ 305 (346)
T ss_dssp HHHHHHHHHHHCCTTC-----EEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCS
T ss_pred HHHHHHHHHhhcccCc-----cccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHHHHCCCCc
Confidence 9999999998865553 79999999999999887 11112223456689999999999999
Q ss_pred C-CHHHHHHHHHhhhc
Q 022280 285 V-TYKDGVKLTLAAEA 299 (300)
Q Consensus 285 ~-~~~~~l~~~~~~~~ 299 (300)
. +|+++|+++++||.
T Consensus 306 ~t~l~e~i~~ti~w~~ 321 (346)
T d1oc2a_ 306 FTDFSEGLEETIQWYT 321 (346)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5 79999999999984
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-44 Score=314.73 Aligned_cols=291 Identities=22% Similarity=0.268 Sum_probs=225.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hh---hhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQ---LLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|.|||||||||||++|+++|+++| ++|+++++.... .. .........++++++|++|.+.++.+++.. +||+
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g---~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~d~ 77 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG---YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY-KIDS 77 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS-CCCE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc---CeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhcc-CCCE
Confidence 569999999999999999999999 899988764221 11 111222567888999999999999988877 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-----CCCCCCCCCCCChhHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-----FYKEEDEIAPVNVYGKS 154 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-----~~~E~~~~~p~~~Y~~s 154 (300)
|||+|+.........++..+..+|+.|+. +++++|++.+++++|++||.++||.... +++|+.+..|.+.|+.|
T Consensus 78 VihlAa~~~~~~~~~~~~~~~~~N~~~t~-~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~~~Y~~s 156 (347)
T d1z45a2 78 VIHFAGLKAVGESTQIPLRYYHNNILGTV-VLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHT 156 (347)
T ss_dssp EEECCSCCCHHHHHHSHHHHHHHHHHHHH-HHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHH
T ss_pred EEEccccccccccccCcccccccchhhhH-HHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCCChhHhH
Confidence 99999987665566688889999999996 9999999999999999999999987542 68888888999999999
Q ss_pred HHHHHHHHHHHc------CCceeEeeeeeeCCCCCC---C----CCCCchHHHHHHHHhcCCceeeccC--------ccc
Q 022280 155 KVAAEKFIYEKC------SNFAILRSSIIYGPQTIS---P----VPKSLPIQWIDSVLSKGEKVEFFHD--------ECR 213 (300)
Q Consensus 155 K~~~e~~~~~~~------~~~~ilR~~~v~G~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 213 (300)
|.++|++++.+. .+++++|++++||+.... . .+..+...+...+.....++.++|+ ..+
T Consensus 157 K~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~ 236 (347)
T d1z45a2 157 KYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIR 236 (347)
T ss_dssp HHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEE
T ss_pred HHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceee
Confidence 999999987653 367999999999975421 1 1223343334333334556666553 357
Q ss_pred CceeHHHHHHHHHHHHhccccccc--cccceeeecCCCccCHHHHHH--------------hhccCCCCCccccChHHHH
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDK--QMQLLLNVGGPDRVSRVQMAE--------------VDRGVQSPADISMDITKLV 277 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~--~~~~i~ni~~~~~~s~~e~~~--------------~~~~~~~~~~~~~~~~k~~ 277 (300)
|++++.|++.+++.+++.....+. ...++||+++++.+|+.|+++ ............+|++|++
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~~ 316 (347)
T d1z45a2 237 DYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAK 316 (347)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCHHHH
T ss_pred eeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCCCCCCCEeeECHHHHH
Confidence 889999999999998887544332 234699999999999999988 1111222345678999999
Q ss_pred HhcCCCc-CCHHHHHHHHHhhhc
Q 022280 278 QTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 278 ~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
++|||+| ++++++|+++++||.
T Consensus 317 ~~lGw~p~~~lee~i~~ti~w~~ 339 (347)
T d1z45a2 317 RELKWQTELQVEDSCKDLWKWTT 339 (347)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHHH
Confidence 9999999 899999999999984
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-44 Score=312.12 Aligned_cols=290 Identities=19% Similarity=0.195 Sum_probs=225.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC------CCch----hhhhhcCCCceeEEEeecCCchhHHHHHH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS------TPLP----QLLLDALPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~------~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
.|||||||||||||++|+++|+++| ++|+++++. .... ..+......++.++++|++|.+.+...+.
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g---~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 78 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAG---YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFK 78 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT---CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCc---CEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccc
Confidence 4799999999999999999999999 889887642 1111 11111124678899999999999988887
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC--CCCCCCCCCCCCh
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS--FYKEEDEIAPVNV 150 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~--~~~E~~~~~p~~~ 150 (300)
.. .+++++|+|+......+..+|...+++|+.|+. ++++++++.++++|+++||..+|+.... ...+.....|.++
T Consensus 79 ~~-~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~-~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T d1ek6a_ 79 KY-SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTI-QLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP 156 (346)
T ss_dssp HC-CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHH-HHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSH
T ss_pred cc-ccccccccccccCcHhhHhCHHHHHHhhhcccc-cccchhhhcCcccccccccceeeeccccccccccccccccCCh
Confidence 65 899999999988776677788999999999997 9999999999999999999999998775 3334445667889
Q ss_pred hHHHHHHHHHHHHHH-----cCCceeEeeeeeeCCCCCC-------CCCCCchHHHHHHHHhcCCceeecc--------C
Q 022280 151 YGKSKVAAEKFIYEK-----CSNFAILRSSIIYGPQTIS-------PVPKSLPIQWIDSVLSKGEKVEFFH--------D 210 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~-----~~~~~ilR~~~v~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 210 (300)
|+.+|..+|+.++++ +..++++|++.+|||.... ..+..+...++..+...+.++.++| .
T Consensus 157 Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~ 236 (346)
T d1ek6a_ 157 YGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCC
Confidence 999999999988765 3367999999999986432 1222334334444554566666654 2
Q ss_pred cccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHH--------------hhccCCCCCccccChHHH
Q 022280 211 ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE--------------VDRGVQSPADISMDITKL 276 (300)
Q Consensus 211 ~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~--------------~~~~~~~~~~~~~~~~k~ 276 (300)
+.|+|+|++|+|.++..+++....... .++||+++++.+++.|+++ .+..........+|++|+
T Consensus 237 ~~Rdfi~v~D~a~~~~~~~~~~~~~~~--~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~~~e~~~~~~d~~k~ 314 (346)
T d1ek6a_ 237 GVRDYIHVVDLAKGHIAALRKLKEQCG--CRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLA 314 (346)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHTTTCC--EEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHH
T ss_pred eeEeEEEEEeccchhhhhccccccccC--ceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCCCCCCCEeeECHHHH
Confidence 468999999999999988776433322 4499999999999999998 111222344567899999
Q ss_pred HHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 277 VQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 277 ~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
+++|||+| ++++++|+++++||.
T Consensus 315 ~~~lgw~p~~slee~I~~~i~w~~ 338 (346)
T d1ek6a_ 315 QEELGWTAALGLDRMCEDLWRWQK 338 (346)
T ss_dssp HHTTCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCcCCCHHHHHHHHHHHHH
Confidence 99999999 899999999999985
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.9e-44 Score=310.33 Aligned_cols=285 Identities=20% Similarity=0.326 Sum_probs=219.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|||||||||||||++|+++|+++|+ ++|+++++..+....+.+ ..++.++++|+++.+++.+...+ ++|+|||+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~--~~V~~ld~~~~~~~~~~~--~~~~~~i~~Di~~~~~~~~~~~~--~~d~Vih~ 74 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH--YEVYGLDIGSDAISRFLN--HPHFHFVEGDISIHSEWIEYHVK--KCDVVLPL 74 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT--CEEEEEESCCGGGGGGTT--CTTEEEEECCTTTCSHHHHHHHH--HCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--CEEEEEeCCCcchhhhcc--CCCeEEEECccCChHHHHHHHHh--CCCccccc
Confidence 6899999999999999999999996 689998876554444433 36788999999988766553332 79999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCC-------CCCCCCChhHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEE-------DEIAPVNVYGKSK 155 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~-------~~~~p~~~Y~~sK 155 (300)
|+.........++...+.+|+.|+. +++++|.+.++ +++++||..+|+.... ..+|. ....|.+.|+.||
T Consensus 75 a~~~~~~~~~~~~~~~~~~nv~gt~-~ll~~~~~~~~-~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK 152 (342)
T d2blla1 75 VAIATPIEYTRNPLRVFELDFEENL-RIIRYCVKYRK-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSK 152 (342)
T ss_dssp BCCCCHHHHHHSHHHHHHHHTHHHH-HHHHHHHHTTC-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHH
T ss_pred cccccccccccCCcccccccccccc-ccccccccccc-cccccccccccccccccccccccccccccccCCCcchhhhcc
Confidence 9987766666778889999999996 99999999888 6788999999988765 33332 2335678899999
Q ss_pred HHHHHHHHHHc----CCceeEeeeeeeCCCCCCCC-----CCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHH
Q 022280 156 VAAEKFIYEKC----SNFAILRSSIIYGPQTISPV-----PKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKI 224 (300)
Q Consensus 156 ~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~ 224 (300)
..+|++++.+. .+++++|++.+|||...... .......++.+++ .++++.++++ +.|+|+|++|+|++
T Consensus 153 ~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~g~~~r~~i~v~D~~~a 231 (342)
T d2blla1 153 QLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLV-EGSPIKLIDGGKQKRCFTDIRDGIEA 231 (342)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHH-HTCCEEEGGGSCCEEECEEHHHHHHH
T ss_pred cchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHH-hCCCccccCCCCeeeeecccccccce
Confidence 99999997654 58899999999998643322 1223445566666 5677777764 68999999999999
Q ss_pred HHHHHhccccccccccceeeecCCC-ccCHHHHHHhh-----------------------------ccCCCCCccccChH
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPD-RVSRVQMAEVD-----------------------------RGVQSPADISMDIT 274 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~-~~s~~e~~~~~-----------------------------~~~~~~~~~~~~~~ 274 (300)
+..+++++... ..+++||+++++ .+|+.|+++.. .....+....+|++
T Consensus 232 ~~~~~~~~~~~--~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 309 (342)
T d2blla1 232 LYRIIENAGNR--CDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIR 309 (342)
T ss_dssp HHHHHHCGGGT--TTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBCCH
T ss_pred eeeehhhcccc--CCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccccccccccccccCHH
Confidence 99999985322 123499998876 47999988800 00011233457999
Q ss_pred HHHHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 275 KLVQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 275 k~~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
|++++|||+| ++++++|+++++||.
T Consensus 310 k~~~~lgw~P~~sleegl~~ti~~y~ 335 (342)
T d2blla1 310 NAHRCLDWEPKIDMQETIDETLDFFL 335 (342)
T ss_dssp HHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999 899999999999984
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.1e-43 Score=308.95 Aligned_cols=286 Identities=16% Similarity=0.116 Sum_probs=220.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-----hhhhhhc----CCCceeEEEeecCCchhHHHHHHh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-----PQLLLDA----LPHSFVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-----~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~ 73 (300)
+|++||||||||||++|++.|+++| |+|++++|..+. ...+... -...+.++.+|+++.+.+...++.
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~ 77 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKG---YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDV 77 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCc---CEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhh
Confidence 4799999999999999999999999 999999986431 1111110 124567889999999988888876
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhc-----cCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-----KENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-----~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
. ++|+|||+|+......+..+|...+..|+.++. +++++++.. ...++++.||..+|+....+++|+++..|.
T Consensus 78 ~-~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E~~~~~p~ 155 (339)
T d1n7ha_ 78 I-KPDEVYNLAAQSHVAVSFEIPDYTADVVATGAL-RLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPR 155 (339)
T ss_dssp H-CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHH-HHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCC
T ss_pred h-ccchhhhccccccccccccCccccccccccccc-hhhhhhhhcccccccceeeeecccceecccCCCCCCCCCCCCCc
Confidence 6 999999999987766566788899999999996 888887653 234788888888888888889999999999
Q ss_pred ChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHH
Q 022280 149 NVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVV 222 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a 222 (300)
+.|+.+|..+|.++..+ +.+++++||++||||..........+..++...........+.| .+.|+|+|++|+|
T Consensus 156 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a 235 (339)
T d1n7ha_ 156 SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYV 235 (339)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehHH
Confidence 99999999999988654 45789999999999975322211112223333333445555555 4789999999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCccCHHHHHHh---------------hc---cCCCCCccccChHHHHHhcCCCc
Q 022280 223 KIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV---------------DR---GVQSPADISMDITKLVQTLNIDP 284 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~---------------~~---~~~~~~~~~~~~~k~~~~lg~~p 284 (300)
+++.++++++... .+++..+...+..++++. .. .+.....+..|++|++++|||+|
T Consensus 236 ~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~P 309 (339)
T d1n7ha_ 236 EAMWLMLQQEKPD------DYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKP 309 (339)
T ss_dssp HHHHHHHTSSSCC------EEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCC
T ss_pred HHHHHHHhcCCCC------ccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCCc
Confidence 9999999986543 567777788998888870 01 11222345679999999999999
Q ss_pred -CCHHHHHHHHHhhhc
Q 022280 285 -VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 -~~~~~~l~~~~~~~~ 299 (300)
++++++|++|++||-
T Consensus 310 ~~~le~gi~~ti~~~~ 325 (339)
T d1n7ha_ 310 QVGFEKLVKMMVDEDL 325 (339)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 899999999999983
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.8e-43 Score=308.44 Aligned_cols=281 Identities=20% Similarity=0.187 Sum_probs=217.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
.|||||||||||||++|+++|+++| ++|++++++........ .....+..+|+.+.+.+...++ ++|+|||
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~~~g---~~V~~~d~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~---~~d~Vih 85 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLKHEG---HYVIASDWKKNEHMTED---MFCDEFHLVDLRVMENCLKVTE---GVDHVFN 85 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCSSSCGG---GTCSEEEECCTTSHHHHHHHHT---TCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEeCCCccchhhh---cccCcEEEeechhHHHHHHHhh---cCCeEee
Confidence 5889999999999999999999999 89999877643321111 1234567889988777666555 8999999
Q ss_pred cccccCccc-cccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCC-------CCCCCCCCChhHH
Q 022280 83 CAALSVPRV-CENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYK-------EEDEIAPVNVYGK 153 (300)
Q Consensus 83 ~a~~~~~~~-~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~-------E~~~~~p~~~Y~~ 153 (300)
+|+...... ....+...+..|+.++. +++++|++.++++||++||..+|+.... +.+ |..+..|.+.|+.
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~n~~gt~-~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~ 164 (363)
T d2c5aa1 86 LAADMGGMGFIQSNHSVIMYNNTMISF-NMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGL 164 (363)
T ss_dssp CCCCCCCHHHHTTCHHHHHHHHHHHHH-HHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHH
T ss_pred cccccccccccccccccccccccchhh-HHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHH
Confidence 998765433 24567788999999996 9999999999999999999999997654 333 4456778999999
Q ss_pred HHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCc-hHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHH
Q 022280 154 SKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSL-PIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIIL 226 (300)
Q Consensus 154 sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~ 226 (300)
||.++|++++.+ +.+++++||+++||+.+........ .............+...++ .+.|+|+|++|+++++.
T Consensus 165 sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~ 244 (363)
T d2c5aa1 165 EKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVL 244 (363)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhHHHHHHH
Confidence 999999988765 4578999999999997654333332 2223333333555566665 46899999999999999
Q ss_pred HHHhccccccccccceeeecCCCccCHHHHHHhh-------------ccCCCCCccccChHHHHHhcCCCc-CCHHHHHH
Q 022280 227 ALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVD-------------RGVQSPADISMDITKLVQTLNIDP-VTYKDGVK 292 (300)
Q Consensus 227 ~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~-------------~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~ 292 (300)
+++++.. + ++||+++++.+|+.|+++.. ..........+|++|++++|||+| ++|+++|+
T Consensus 245 ~~~~~~~--~----~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~ska~~~LGw~p~~sleegi~ 318 (363)
T d2c5aa1 245 RLTKSDF--R----EPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLR 318 (363)
T ss_dssp HHHHSSC--C----SCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHHHH
T ss_pred HHHhCCC--C----CeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCCCCCccccccCHHHHHHHhCCCCCCCHHHHHH
Confidence 9998642 2 28999999999999999811 111223446689999999999999 99999999
Q ss_pred HHHhhhc
Q 022280 293 LTLAAEA 299 (300)
Q Consensus 293 ~~~~~~~ 299 (300)
++++||.
T Consensus 319 ~ti~w~~ 325 (363)
T d2c5aa1 319 ITYFWIK 325 (363)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999984
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=3.3e-42 Score=304.58 Aligned_cols=293 Identities=20% Similarity=0.203 Sum_probs=222.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhh-ccCCCceeeecCC---CC------Cchhh---hhhc--------CCCceeEEEeec
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHH---ST------PLPQL---LLDA--------LPHSFVFFDVDL 61 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~-~g~~~~~v~~~~r---~~------~~~~~---~~~~--------~~~~~~~~~~D~ 61 (300)
.|||||||||||||++|+++|++ .| ++|+++++ +. +.... .... ......++++|+
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~---~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 78 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTN---HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDV 78 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC---CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCT
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCC---CEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcc
Confidence 57999999999999999999997 56 89998753 10 11111 1110 123466789999
Q ss_pred CCchhHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC----
Q 022280 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS---- 137 (300)
Q Consensus 62 ~~~~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~---- 137 (300)
+|.+.++++++...++|+|||+|+..........+...+++|+.++. ++++++++.++++++++||..+|+....
T Consensus 79 ~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~-~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 157 (383)
T d1gy8a_ 79 RNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGIL-RLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVS 157 (383)
T ss_dssp TCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHH-HHHHHHHHTTCCEEEEEEEGGGTBSCCC----
T ss_pred cCHHHhhhhhhccceeehhhccccccccccccccccccccccccccc-ccchhhhccCCccccccccccccccccccccc
Confidence 99999999998887789999999987766666678888999999997 9999999999999999999999876532
Q ss_pred ----CCCCCCCCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCC------CCchHHHHHHHHh---
Q 022280 138 ----FYKEEDEIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVP------KSLPIQWIDSVLS--- 200 (300)
Q Consensus 138 ----~~~E~~~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~------~~~~~~~~~~~~~--- 200 (300)
++.|+++..|.+.|+.+|...|++++.+ +.+++++|++++|||+.....+ ..+.+.++..++.
T Consensus 158 ~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~ 237 (383)
T d1gy8a_ 158 TNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIA 237 (383)
T ss_dssp -CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHS
T ss_pred ccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhcc
Confidence 5777888899999999999999999765 4578999999999998653322 2223333333221
Q ss_pred ------------cCCceeecc--------CcccCceeHHHHHHHHHHHHhccccccc----cccceeeecCCCccCHHHH
Q 022280 201 ------------KGEKVEFFH--------DECRCPVYVRDVVKIILALTNRWLSEDK----QMQLLLNVGGPDRVSRVQM 256 (300)
Q Consensus 201 ------------~~~~~~~~~--------~~~~~~i~v~D~a~~~~~~~~~~~~~~~----~~~~i~ni~~~~~~s~~e~ 256 (300)
.++++.++| .+.|+|+|++|+|++++.+++.....+. ...++||+++++.+|+.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el 317 (383)
T d1gy8a_ 238 PDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREV 317 (383)
T ss_dssp CC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHH
T ss_pred ccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHH
Confidence 234444543 3578999999999999999986433221 2245999999999999999
Q ss_pred HH--------------hhccCCCCCccccChHHHHHhcCCCc-CCHHHHHHHH-Hhhhc
Q 022280 257 AE--------------VDRGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLT-LAAEA 299 (300)
Q Consensus 257 ~~--------------~~~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~-~~~~~ 299 (300)
++ ......+.....+|++|++++|||+| ++++++|+++ +.|+-
T Consensus 318 ~~~i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~ 376 (383)
T d1gy8a_ 318 IEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQR 376 (383)
T ss_dssp HHHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCceEECCCCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHH
Confidence 88 11112234456789999999999999 8999999997 47763
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.6e-41 Score=299.78 Aligned_cols=286 Identities=20% Similarity=0.159 Sum_probs=210.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC-------------CC---Cchhh----hhhcCCCceeEEEeecC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-------------ST---PLPQL----LLDALPHSFVFFDVDLK 62 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r-------------~~---~~~~~----~~~~~~~~~~~~~~D~~ 62 (300)
||||||||||||||++|+++|+++| ++|++++. +. ..... .....+.++.++++|++
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g---~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~ 77 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN---YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDIC 77 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCC
Confidence 6899999999999999999999999 89998751 10 11111 11112467889999999
Q ss_pred CchhHHHHHHhcCCCCEEEEcccccCcccccc---ChhhhhhcccccchHHHHHhhhhccCC-eEEEeeccccccCCCCC
Q 022280 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCEN---DPDSAMSINVPSSLVNWLSSFTENKEN-LLIHLSTDQVYEGVKSF 138 (300)
Q Consensus 63 ~~~~~~~~~~~~~~~d~vih~a~~~~~~~~~~---~~~~~~~~nv~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~ 138 (300)
|.+.+..+++.. ++|+|||+|+......+.. .+..++.+|+.|+. +++++|++.+++ ++++.||..+|+....+
T Consensus 78 d~~~l~~~~~~~-~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~-nll~~~~~~~~~~~~i~~ss~~~~~~~~~~ 155 (393)
T d1i24a_ 78 DFEFLAESFKSF-EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTL-NVLFAIKEFGEECHLVKLGTMGEYGTPNID 155 (393)
T ss_dssp SHHHHHHHHHHH-CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHH-HHHHHHHHHCTTCEEEEECCGGGGCCCSSC
T ss_pred CHHHHHHHHHhh-cchheecccccccccccccccccccccccccccccc-HHHHHHHHhccccceeeccccccccccccc
Confidence 999999999887 8999999999765443332 35577899999997 999999998876 67777778888765543
Q ss_pred CCCC--------------CCCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCC--------------C
Q 022280 139 YKEE--------------DEIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISP--------------V 186 (300)
Q Consensus 139 ~~E~--------------~~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~--------------~ 186 (300)
..|. .+..|.+.|+.||.++|.++..+ +.+++++||+++|||+.... .
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~ 235 (393)
T d1i24a_ 156 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV 235 (393)
T ss_dssp BCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTT
T ss_pred cccccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccc
Confidence 3322 24567889999999999988654 45789999999999974321 1
Q ss_pred CCCchHHHHHHHHhcCCceeeccC--cccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHh-----
Q 022280 187 PKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV----- 259 (300)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~----- 259 (300)
....+..++.+.. .++++.++|+ +.|+|+|++|+++++..++++....+. ..++|. +++.+|+.|+++.
T Consensus 236 ~~~~i~~~~~~~~-~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~--~~~~~~-~~~~~si~el~~~i~~~~ 311 (393)
T d1i24a_ 236 FGTALNRFCVQAA-VGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGE--FRVFNQ-FTEQFSVNELASLVTKAG 311 (393)
T ss_dssp TCCHHHHHHHHHH-HTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTC--EEEEEE-CSEEEEHHHHHHHHHHHH
T ss_pred cccchhhhhHHhh-cCCeeEEeeecccccccccccchHHHHHHHHHhhcccce--eeeecC-CCCeeEHHHHHHHHHHHH
Confidence 1122334444444 6778888875 679999999999999999998766654 113333 4467898888770
Q ss_pred --------------hccCCCCCccccChHHHHHhcCCCc-CCHHHHHHHHHhhh
Q 022280 260 --------------DRGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLAAE 298 (300)
Q Consensus 260 --------------~~~~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~~~~~~ 298 (300)
+........+..|++|+++ |||+| ++++++|+++++|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-LGw~P~~~~~~~i~~~~~~~ 364 (393)
T d1i24a_ 312 SKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYLSDSLLDSLLNFA 364 (393)
T ss_dssp HTTTCCCCEEEECCSSCSCSSCCCCBCCCHHHH-TTCCCCCCCHHHHHHHHHHH
T ss_pred HhhCCCcceeeccCCCCCCCccEecCCHHHHHH-cCCccccCHHHHHHHHHHHH
Confidence 0011223345678999964 99999 89999999999885
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.8e-41 Score=288.82 Aligned_cols=275 Identities=16% Similarity=0.155 Sum_probs=211.1
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+|||||||||||||++|+++|+++| +.|++++++. +.|+.+.+.+..+++.. ++|+|+
T Consensus 1 ~kkkIlITG~tGfiG~~l~~~L~~~g---~~vi~~~~~~-----------------~~~~~~~~~~~~~~~~~-~~d~v~ 59 (315)
T d1e6ua_ 1 AKQRVFIAGHRGMVGSAIRRQLEQRG---DVELVLRTRD-----------------ELNLLDSRAVHDFFASE-RIDQVY 59 (315)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCT---TEEEECCCTT-----------------TCCTTCHHHHHHHHHHH-CCSEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCc---CEEEEecCch-----------------hccccCHHHHHHHHhhc-CCCEEE
Confidence 36899999999999999999999999 7787765442 35889999888888766 899999
Q ss_pred EcccccCcc-ccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCC-----CCCChhHHH
Q 022280 82 NCAALSVPR-VCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEI-----APVNVYGKS 154 (300)
Q Consensus 82 h~a~~~~~~-~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~-----~p~~~Y~~s 154 (300)
|+|+..... .....+.+.++.|+.|+. +++++|.+.++++|||+||.++||.... +++|+.+. .|.++|+.|
T Consensus 60 ~~a~~~~~~~~~~~~~~~~~~~Nv~gt~-~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~s 138 (315)
T d1e6ua_ 60 LAAAKVGGIVANNTYPADFIYQNMMIES-NIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIA 138 (315)
T ss_dssp ECCCCCCCHHHHHHCHHHHHHHHHHHHH-HHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHH
T ss_pred EcchhccccccchhhHHHHHHHHHHHHH-HHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHH
Confidence 999765432 223456677899999996 9999999999999999999999998665 77876543 234579999
Q ss_pred HHHHHHHHHHHc----CCceeEeeeeeeCCCCCCCCCCCc-hHH----HHHHHHhcCCceeeccC--cccCceeHHHHHH
Q 022280 155 KVAAEKFIYEKC----SNFAILRSSIIYGPQTISPVPKSL-PIQ----WIDSVLSKGEKVEFFHD--ECRCPVYVRDVVK 223 (300)
Q Consensus 155 K~~~e~~~~~~~----~~~~ilR~~~v~G~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~ 223 (300)
|.++|++++.+. .+++++||++||||++........ ... ........+..+.+.|+ +.++|+|++|++.
T Consensus 139 K~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~ 218 (315)
T d1e6ua_ 139 KIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAA 218 (315)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHH
Confidence 999999987654 478999999999998654333222 211 12233335667777764 5799999999999
Q ss_pred HHHHHHhcccccc----ccccceeeecCCCccCHHHHHHh--------------hccCCCCCccccChHHHHHhcCCCc-
Q 022280 224 IILALTNRWLSED----KQMQLLLNVGGPDRVSRVQMAEV--------------DRGVQSPADISMDITKLVQTLNIDP- 284 (300)
Q Consensus 224 ~~~~~~~~~~~~~----~~~~~i~ni~~~~~~s~~e~~~~--------------~~~~~~~~~~~~~~~k~~~~lg~~p- 284 (300)
++..++++..... ......+|++.+...++.++++. ...........+|++|++ +|||+|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d~sk~k-~Lg~~p~ 297 (315)
T d1e6ua_ 219 ASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHE 297 (315)
T ss_dssp HHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHH-HTTCCCC
T ss_pred HHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccCHHHHH-HcCCCCC
Confidence 9999997754321 12244799999999999998871 111222334568999996 599999
Q ss_pred CCHHHHHHHHHhhhc
Q 022280 285 VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 ~~~~~~l~~~~~~~~ 299 (300)
++++++|+++++||.
T Consensus 298 ~~l~e~i~~ti~w~~ 312 (315)
T d1e6ua_ 298 ISLEAGLASTYQWFL 312 (315)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 899999999999985
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=2.6e-40 Score=279.98 Aligned_cols=259 Identities=22% Similarity=0.312 Sum_probs=217.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|||||||||||||++|+++|.++| ++|++++|+ +.|++|.++++++++.. ++|+|||+
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g---~~Vi~~~r~------------------~~D~~d~~~~~~~l~~~-~~d~vih~ 59 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN---VEVIPTDVQ------------------DLDITNVLAVNKFFNEK-KPNVVINC 59 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS---EEEEEECTT------------------TCCTTCHHHHHHHHHHH-CCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEeech------------------hccCCCHHHHHHHHHHc-CCCEEEee
Confidence 789999999999999999999999 999998875 25899999999998877 89999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
|+......+...+......|+.... .+.+.+...+. .+++.||..+|+.... +.+|.+++.|...|+.+|...|+.+
T Consensus 60 a~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~-~~~~~ss~~v~~~~~~~~~~e~~~~~~~~~~~~~k~~~e~~~ 137 (281)
T d1vl0a_ 60 AAHTAVDKCEEQYDLAYKINAIGPK-NLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFV 137 (281)
T ss_dssp CCCCCHHHHHHCHHHHHHHHTHHHH-HHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhccccccccc-ccccccccccc-cccccccceeeeccccccccccccccchhhhhhhhhHHHHHH
Confidence 9987766666777888888988875 77777766555 8888999999888765 8999999999999999999999999
Q ss_pred HHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccce
Q 022280 163 YEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLL 242 (300)
Q Consensus 163 ~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i 242 (300)
++.+.+++++||+++||++.. +...++ ..+..+....+.+++.++|+|++|+++++..++++... ++
T Consensus 138 ~~~~~~~~i~R~~~vyG~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~------g~ 204 (281)
T d1vl0a_ 138 KALNPKYYIVRTAWLYGDGNN------FVKTMI-NLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKNY------GT 204 (281)
T ss_dssp HHHCSSEEEEEECSEESSSSC------HHHHHH-HHHHHCSEEEEESSCEECCEEHHHHHHHHHHHHHHTCC------EE
T ss_pred HHhCCCccccceeEEeCCCcc------cccchh-hhhccCCceeecCCceeccchhhhhhhhhhhhhhhccc------Cc
Confidence 999999999999999999742 233333 44446777888888999999999999999999988543 28
Q ss_pred eeecCCCccCHHHHHH--------------hhcc-----CCCCCccccChHHHHHhcCCCcCCHHHHHHHHHhhhc
Q 022280 243 LNVGGPDRVSRVQMAE--------------VDRG-----VQSPADISMDITKLVQTLNIDPVTYKDGVKLTLAAEA 299 (300)
Q Consensus 243 ~ni~~~~~~s~~e~~~--------------~~~~-----~~~~~~~~~~~~k~~~~lg~~p~~~~~~l~~~~~~~~ 299 (300)
||+++++.+|+.|+++ .... ..+|.+..+|++|++++|||+|.+|+++|+++++++.
T Consensus 205 ~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 205 FHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITREWKESLKEYIDLLQ 280 (281)
T ss_dssp EECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHHHHHHT
T ss_pred eeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999888 1101 1123344579999999999999999999999999863
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.1e-40 Score=289.43 Aligned_cols=286 Identities=19% Similarity=0.273 Sum_probs=217.7
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC--Cchhhhhh-cCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST--PLPQLLLD-ALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~--~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
||||||||||||++|+++|+++| ++|+++++-. .....+.. ....+++++++|++|.+++..+++.. ++|+||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g---~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~-~~d~Vi 77 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG---IDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKY-MPDSCF 77 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH-CCSEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCc---CEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhc-CCceEE
Confidence 79999999999999999999999 8999876421 22221111 12467888999999999999999877 899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC-C-C----------------CCCCC
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK-S-F----------------YKEED 143 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~-~-~----------------~~E~~ 143 (300)
|+|+.........++...+++|+.||. ++++++.+.+++++++.||..+++... . + ..+..
T Consensus 78 h~aa~~~~~~~~~~~~~~~~~Nv~gt~-nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T d1orra_ 78 HLAGQVAMTTSIDNPCMDFEINVGGTL-NLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDEST 156 (338)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHH-HHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTS
T ss_pred eecccccccccccChHHHHHHHHHHHH-HHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCC
Confidence 999988766566688899999999997 999999999998777777655544432 2 1 12334
Q ss_pred CCCCCChhHHHHHHHHHHHHHH----cCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh----cCCceeeccC--ccc
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEK----CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLS----KGEKVEFFHD--ECR 213 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~ 213 (300)
+..|.+.|+.+|...|.++... .....++|++.+||+.............++...+. .++++.++|+ +.|
T Consensus 157 ~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r 236 (338)
T d1orra_ 157 QLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVR 236 (338)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEE
T ss_pred ccccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCceeE
Confidence 4567889999999999987654 44678899999998876555555555555554442 3567777765 679
Q ss_pred CceeHHHHHHHHHHHHhcccc-ccccccceeeecC--CCccCHHHHHH--------------hhccCCCCCccccChHHH
Q 022280 214 CPVYVRDVVKIILALTNRWLS-EDKQMQLLLNVGG--PDRVSRVQMAE--------------VDRGVQSPADISMDITKL 276 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~-~~~~~~~i~ni~~--~~~~s~~e~~~--------------~~~~~~~~~~~~~~~~k~ 276 (300)
+|+|++|++++++.++++... .++ +||+.. +..+++.|+++ ..........+..|++|+
T Consensus 237 ~~~~v~D~~~~~~~~l~~~~~~~~~----~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 312 (338)
T d1orra_ 237 DVLHAEDMISLYFTALANVSKIRGN----AFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKI 312 (338)
T ss_dssp ECEEHHHHHHHHHHHHHTHHHHTTC----EEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHHH
T ss_pred eeecccchhhHHHHHHhccccccCc----cccccccccccccHHHHHHHHHHHHCCCceeEeCCCCCCCcCeeeECHHHH
Confidence 999999999999999987432 333 888854 45789999888 111122334466799999
Q ss_pred HHhcCCCc-CCHHHHHHHHHhhhc
Q 022280 277 VQTLNIDP-VTYKDGVKLTLAAEA 299 (300)
Q Consensus 277 ~~~lg~~p-~~~~~~l~~~~~~~~ 299 (300)
+++|||+| ++++++|+++++||.
T Consensus 313 ~~~Lg~~p~~sl~e~i~~ti~W~k 336 (338)
T d1orra_ 313 TNAIDWSPKVSAKDGVQKMYDWTS 336 (338)
T ss_dssp HHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHCCCcCCCHHHHHHHHHHHHH
Confidence 99999999 899999999999986
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=5.2e-40 Score=287.42 Aligned_cols=290 Identities=17% Similarity=0.181 Sum_probs=219.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc--CCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA--LPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
.+|||||||||||||++|+++|+++| ++|++++|+......+... ..+.+.++++|++|++.+..+++.. .+|+
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g---~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~-~~~~ 82 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMG---ATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREF-QPEI 82 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhc-hhhh
Confidence 46899999999999999999999999 8999999987655544432 2467889999999999998888876 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc-cccCCCC--CCCCCCCCCCCChhHHHHH
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ-VYEGVKS--FYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~-~~~~~~~--~~~E~~~~~p~~~Y~~sK~ 156 (300)
|+|+|+......+...+...+.+|+.|+. ++++++.+.+..++++.||.+ .+..... +.+|+.+..|.++|+.+|.
T Consensus 83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~-n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~ 161 (356)
T d1rkxa_ 83 VFHMAAQPLVRLSYSEPVETYSTNVMGTV-YLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKG 161 (356)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHH-HHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHH
T ss_pred hhhhhccccccccccCCccccccccccch-hhhhhhhccccccccccccccccccccccccccccccccCCCCccccccc
Confidence 99999987766666788999999999996 999999997665544444444 4433332 6778888889999999999
Q ss_pred HHHHHHHHHc-------------CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeec-cCcccCceeHHHHH
Q 022280 157 AAEKFIYEKC-------------SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF-HDECRCPVYVRDVV 222 (300)
Q Consensus 157 ~~e~~~~~~~-------------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~a 222 (300)
..|..+..+. ..++++||+++|||++.. ...++..++.... .+.++... +.+.++++|++|++
T Consensus 162 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~--~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~v~D~~ 238 (356)
T d1rkxa_ 162 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA--LDRIVPDILRAFE-QSQPVIIRNPHAIRPWQHVLEPL 238 (356)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC--SSCHHHHHHHHHH-TTCCEECSCTTCEECCEETHHHH
T ss_pred cchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcch--hhHHHHHHHHHHh-CCCceEEeecccccccccccccc
Confidence 9998776432 357899999999998642 2334444444443 44444332 34789999999999
Q ss_pred HHHHHHHhccccccccccceee--ecCCCccCHHHHHH-----h----------hccCCCCCccccChHHHHHhcCCCc-
Q 022280 223 KIILALTNRWLSEDKQMQLLLN--VGGPDRVSRVQMAE-----V----------DRGVQSPADISMDITKLVQTLNIDP- 284 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~n--i~~~~~~s~~e~~~-----~----------~~~~~~~~~~~~~~~k~~~~lg~~p- 284 (300)
.++..++++....+.......+ ...+..++..++++ . ...+.....+.+|++|++++|||+|
T Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P~ 318 (356)
T d1rkxa_ 239 SGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPR 318 (356)
T ss_dssp HHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCC
T ss_pred chhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHHHHCCCcC
Confidence 9999999987665543322333 34455788888777 0 0111223456789999999999999
Q ss_pred CCHHHHHHHHHhhhc
Q 022280 285 VTYKDGVKLTLAAEA 299 (300)
Q Consensus 285 ~~~~~~l~~~~~~~~ 299 (300)
++++++|+++++||.
T Consensus 319 ~~l~egi~~ti~wyk 333 (356)
T d1rkxa_ 319 WNLNTTLEYIVGWHK 333 (356)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 899999999999874
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-38 Score=270.61 Aligned_cols=268 Identities=22% Similarity=0.322 Sum_probs=214.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|||||||||||||++|++.|.++| +.|.+ .++... +.+|++|.+.+++.++.. +||+||||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~-~~~~~~--------------~~~Dl~~~~~~~~~i~~~-~~D~Vih~ 61 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG---NLIAL-DVHSKE--------------FCGDFSNPKGVAETVRKL-RPDVIVNA 61 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS---EEEEE-CTTCSS--------------SCCCTTCHHHHHHHHHHH-CCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEE-ECCCcc--------------ccCcCCCHHHHHHHHHHc-CCCEEEEe
Confidence 689999999999999999999998 54544 443221 457999999999988877 89999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCC-CCCCCCCCCCCChhHHHHHHHHHHH
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKS-FYKEEDEIAPVNVYGKSKVAAEKFI 162 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~~ 162 (300)
||......+...+...+..|+.++. +++++|++.+. +++++||..+|+.... |++|++++.|.+.|+.+|..+|+.+
T Consensus 62 Aa~~~~~~~~~~~~~~~~~n~~~~~-~l~~~~~~~~~-~~~~~ss~~~~~~~~~~~~~E~~~~~p~~~y~~~k~~~e~~~ 139 (298)
T d1n2sa_ 62 AAHTAVDKAESEPELAQLLNATSVE-AIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKAL 139 (298)
T ss_dssp CCCCCHHHHTTCHHHHHHHHTHHHH-HHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHHH
T ss_pred cccccccccccCccccccccccccc-cchhhhhcccc-ccccccccccccCCCCCCCccccccCCCchHhhhhhhhhhhH
Confidence 9988777777888899999999996 99999988886 7999999888877665 8999999999999999999999999
Q ss_pred HHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccce
Q 022280 163 YEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLL 242 (300)
Q Consensus 163 ~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i 242 (300)
+.......++|++..++..... ....+...+.....+...++..++++|++|+++++..++...... ....++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~~~~~-~~~~~~ 212 (298)
T d1n2sa_ 140 QDNCPKHLIFRTSWVYAGKGNN------FAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNK-PEVAGL 212 (298)
T ss_dssp HHHCSSEEEEEECSEECSSSCC------HHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHHHHHHHC-GGGCEE
T ss_pred HhhhcccccccccceeeccCCc------cchhhhhhhcccceeecccceeecccccchHHHHHHHHHhhhhcc-cccccc
Confidence 9988888888877666443211 223444555567777888888899999999999998888753222 123459
Q ss_pred eeecCCCccCHHHHHHh----------h---------------ccCCCCCccccChHHHHHhcCCCcCCHHHHHHHHHhh
Q 022280 243 LNVGGPDRVSRVQMAEV----------D---------------RGVQSPADISMDITKLVQTLNIDPVTYKDGVKLTLAA 297 (300)
Q Consensus 243 ~ni~~~~~~s~~e~~~~----------~---------------~~~~~~~~~~~~~~k~~~~lg~~p~~~~~~l~~~~~~ 297 (300)
||+++++.++..++++. . ....+|.+..+|++|+++.|||+|.+|+++|++++++
T Consensus 213 ~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~~~~~gl~~~i~~ 292 (298)
T d1n2sa_ 213 YHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQWELGVKRMLTE 292 (298)
T ss_dssp EECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCCBHHHHHHHHHHH
T ss_pred ccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 99999999999998770 0 0011233446899999999999999999999999987
Q ss_pred hc
Q 022280 298 EA 299 (300)
Q Consensus 298 ~~ 299 (300)
+.
T Consensus 293 ~~ 294 (298)
T d1n2sa_ 293 MF 294 (298)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=5.8e-39 Score=279.44 Aligned_cols=281 Identities=16% Similarity=0.124 Sum_probs=204.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh----cC-CCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD----AL-PHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~----~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
+|+|||||||||||++|+++|+++| ++|+++.|+.++...+.. .. ......+.+|++|.+++..++. ++
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G---~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 84 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHG---YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK---GA 84 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT---TC
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc---cc
Confidence 6899999999999999999999999 999999998654443322 11 2233457789999988777665 89
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhc-cCCeEEEeeccccccC-CCC----C-------------
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-KENLLIHLSTDQVYEG-VKS----F------------- 138 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~-~~~----~------------- 138 (300)
|+|+|+|+.... ...+...+..|+.|+. +++++|.+. ++++|||+||..+++. .+. .
T Consensus 85 ~~v~~~a~~~~~---~~~~~~~~~~nv~gt~-~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 160 (342)
T d1y1pa1 85 AGVAHIASVVSF---SNKYDEVVTPAIGGTL-NALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDK 160 (342)
T ss_dssp SEEEECCCCCSC---CSCHHHHHHHHHHHHH-HHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHH
T ss_pred hhhhhhcccccc---cccccccccchhhhHH-HHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccc
Confidence 999999997643 2356777889999996 999999885 6899999999765432 211 1
Q ss_pred ---CCCCCCCCCCChhHHHHHHHHHHHHHHc----C--CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc
Q 022280 139 ---YKEEDEIAPVNVYGKSKVAAEKFIYEKC----S--NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH 209 (300)
Q Consensus 139 ---~~E~~~~~p~~~Y~~sK~~~e~~~~~~~----~--~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
..|+++..|.+.|+.||..+|.+++.+. . +++++||+.+|||.............++...+.+.......+
T Consensus 161 ~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~~ 240 (342)
T d1y1pa1 161 AKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALAL 240 (342)
T ss_dssp HHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHT
T ss_pred cccccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccCC
Confidence 2344455567789999999999776553 2 457789999999964433334445566666664444444445
Q ss_pred CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHHHHHhhc-----c-----C--CCCCccccCh---H
Q 022280 210 DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVDR-----G-----V--QSPADISMDI---T 274 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e~~~~~~-----~-----~--~~~~~~~~~~---~ 274 (300)
.+.++|+|++|+|++++.+++++...++ ||+++++.+|+.|+++... . . ........+. .
T Consensus 241 ~~~~~~v~v~Dva~~~i~~l~~~~~~g~-----~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~~~~~~~~~~~~~s~ 315 (342)
T d1y1pa1 241 MPPQYYVSAVDIGLLHLGCLVLPQIERR-----RVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSL 315 (342)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHCTTCCSC-----EEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCCCCCCCEECCHHHH
T ss_pred ccceeeeeHHHHHHHHHHhhcCccccce-----EEEEcCCceEHHHHHHHHHHHcCCCcCCccCCccCcccccccchHHH
Confidence 6788999999999999999999776664 7788889999999998110 0 0 0001111222 3
Q ss_pred HHHHhcCCCc-CCHHHHHHHHHhhh
Q 022280 275 KLVQTLNIDP-VTYKDGVKLTLAAE 298 (300)
Q Consensus 275 k~~~~lg~~p-~~~~~~l~~~~~~~ 298 (300)
+..+.|||.+ ++++++|+++++.+
T Consensus 316 ~~~k~lg~~~~~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 316 EILKSLGRPGWRSIEESIKDLVGSE 340 (342)
T ss_dssp HHHHHTTCCSCCCHHHHHHHHHCCS
T ss_pred HHHHHcCCCCCcCHHHHHHHHHHhC
Confidence 3346799999 89999999999865
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.4e-35 Score=249.21 Aligned_cols=273 Identities=23% Similarity=0.252 Sum_probs=187.7
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc--hhhhhhcCCCceeEEEeecCCchhHH-HHH--HhcCCCCEE
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQLLLDALPHSFVFFDVDLKSGSGFD-AVA--LKFGQPDVV 80 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~--~~~~~~d~v 80 (300)
|||||||||||++|+++|+++|+ ++|+++++-... ...+.+. ...|..+.+.+. ... ..+..+++|
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~--~~V~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGI--TDILVVDNLKDGTKFVNLVDL-------NIADYMDKEDFLIQIMAGEEFGDVEAI 72 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTC--CCEEEEECCSSGGGGHHHHTS-------CCSEEEEHHHHHHHHHTTCCCSSCCEE
T ss_pred EEEecCccHHHHHHHHHHHhCCC--CeEEEEECCCCcchhhccccc-------chhhhccchHHHHHHhhhhcccchhhh
Confidence 89999999999999999999993 357776532221 1111111 122333322222 222 223478999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCC-CCCCCCCCCCCCChhHHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVK-SFYKEEDEIAPVNVYGKSKVAAE 159 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~-~~~~E~~~~~p~~~Y~~sK~~~e 159 (300)
+|+|+..... ..........|+.++. ++++++...++ ++++.||..+|+... ...+|+.+..|.+.|+.+|...|
T Consensus 73 ~~~aa~~~~~--~~~~~~~~~~~~~~~~-~~l~~~~~~~i-~~v~~ss~~~~~~~~~~~~~~~~~~~~~~~Y~~~K~~~e 148 (307)
T d1eq2a_ 73 FHEGACSSTT--EWDGKYMMDNNYQYSK-ELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFD 148 (307)
T ss_dssp EECCSCCCTT--CCCHHHHHHHTHHHHH-HHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHHH
T ss_pred hhhccccccc--cccccccccccccccc-ccccccccccc-cccccccccccccccccccccccccccccccccccchhh
Confidence 9999865433 2355667788888886 99999999998 566666666655544 46667777788999999999999
Q ss_pred HHHHHHcC----CceeEeeeeeeCCCCCCCCC-CCchHHHHHHHHhcCCcee-eccC--cccCceeHHHHHHHHHHHHhc
Q 022280 160 KFIYEKCS----NFAILRSSIIYGPQTISPVP-KSLPIQWIDSVLSKGEKVE-FFHD--ECRCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 160 ~~~~~~~~----~~~ilR~~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~i~v~D~a~~~~~~~~~ 231 (300)
.+++.+.. +++++||+++|||+...... ......+. ..+..++... ..|+ ..|+|+|++|++.++..++++
T Consensus 149 ~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~ 227 (307)
T d1eq2a_ 149 EYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLN-TQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLEN 227 (307)
T ss_dssp HHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHH-HHHHC-------------CBCEEEHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccceeEeeccccccccccccccccc-cccccccceeeecCccceeeeeeecccHHHHHHHHhhh
Confidence 99987653 78999999999997643322 22333334 3343444333 3343 579999999999999999987
Q ss_pred cccccccccceeeecCCCccCHHHHHHhh-------------cc----CCCCCccccChHHHHHhcCCCc-CCHHHHHHH
Q 022280 232 WLSEDKQMQLLLNVGGPDRVSRVQMAEVD-------------RG----VQSPADISMDITKLVQTLNIDP-VTYKDGVKL 293 (300)
Q Consensus 232 ~~~~~~~~~~i~ni~~~~~~s~~e~~~~~-------------~~----~~~~~~~~~~~~k~~~~lg~~p-~~~~~~l~~ 293 (300)
... .+||+++++..|++|+++.. .. .........|++|+++++||+| ++++++|++
T Consensus 228 ~~~------~~~~~~~~~~~si~~i~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~ 301 (307)
T d1eq2a_ 228 GVS------GIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTE 301 (307)
T ss_dssp CCC------EEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHHTTCCCCCCCHHHHHHH
T ss_pred ccc------cccccccccchhHHHHHHHHHHhcCCCCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCCCHHHHHHH
Confidence 432 28999999999999999911 00 0112223458999999999999 999999999
Q ss_pred HHhhh
Q 022280 294 TLAAE 298 (300)
Q Consensus 294 ~~~~~ 298 (300)
+++|+
T Consensus 302 ~i~w~ 306 (307)
T d1eq2a_ 302 YMAWL 306 (307)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99996
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.4e-30 Score=205.60 Aligned_cols=197 Identities=11% Similarity=0.071 Sum_probs=153.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|.||||+||||||+||++++++|+++| ++|+++.|++++.... ...+++++++|++|.+++.++++ ++|+|
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g---~~V~~~~R~~~~~~~~---~~~~~~~~~gD~~d~~~l~~al~---~~d~v 71 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAG---YEVTVLVRDSSRLPSE---GPRPAHVVVGDVLQAADVDKTVA---GQDAV 71 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCGGGSCSS---SCCCSEEEESCTTSHHHHHHHHT---TCSEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEEcChhhcccc---cccccccccccccchhhHHHHhc---CCCEE
Confidence 889999999999999999999999999 8999999986554322 24567889999999998888877 89999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
||++|..... ....++..++. ++++++++++++|||++||..+++.... .+.....|...|..+|+
T Consensus 72 i~~~g~~~~~-------~~~~~~~~~~~-~l~~aa~~~~v~r~i~~ss~~~~~~~~~------~~~~~~~~~~~~~~~e~ 137 (205)
T d1hdoa_ 72 IVLLGTRNDL-------SPTTVMSEGAR-NIVAAMKAHGVDKVVACTSAFLLWDPTK------VPPRLQAVTDDHIRMHK 137 (205)
T ss_dssp EECCCCTTCC-------SCCCHHHHHHH-HHHHHHHHHTCCEEEEECCGGGTSCTTC------SCGGGHHHHHHHHHHHH
T ss_pred EEEeccCCch-------hhhhhhHHHHH-HHHHHHHhcCCCeEEEEeeeeccCCCcc------ccccccccchHHHHHHH
Confidence 9999864321 11234556664 9999999999999999999888765433 11223478899999999
Q ss_pred HHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccc
Q 022280 161 FIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDK 237 (300)
Q Consensus 161 ~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 237 (300)
++++.+.+|+++||+.+++.... ....+...+.....+++++|+|++++.+++++.-.|+
T Consensus 138 ~l~~~~~~~tiirp~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~~g~ 197 (205)
T d1hdoa_ 138 VLRESGLKYVAVMPPHIGDQPLT-----------------GAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGH 197 (205)
T ss_dssp HHHHTCSEEEEECCSEEECCCCC-----------------SCCEEESSSCSSCSEEEHHHHHHHHHHTTSCSTTTTC
T ss_pred HHHhcCCceEEEecceecCCCCc-----------------ccEEEeeCCCCCCCcCCHHHHHHHHHHHhCCCCCCCE
Confidence 99999999999999999864321 1122233345667899999999999999998765444
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.3e-30 Score=209.94 Aligned_cols=204 Identities=16% Similarity=0.088 Sum_probs=150.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++|+|||||||||||++|+++|+++|.- .+|++..|++....... ...+....+|+.+.+++...++ ++|+|
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~-~~v~~~~R~~~~~~~~~---~~~i~~~~~D~~~~~~~~~~~~---~~d~v 84 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLF-SKVTLIGRRKLTFDEEA---YKNVNQEVVDFEKLDDYASAFQ---GHDVG 84 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCC-SEEEEEESSCCCCCSGG---GGGCEEEECCGGGGGGGGGGGS---SCSEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCC-CEEEEEecChhhhcccc---cceeeeeeeccccccccccccc---ccccc
Confidence 56789999999999999999999999931 27999999764432211 2345666778877666554444 89999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
||+++.... ...+..+..+|+.++. +++++|.+.++++||++||..++... .+.|+.+|..+|+
T Consensus 85 i~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~a~~~~v~~fi~~Ss~~~~~~~------------~~~Y~~~K~~~E~ 148 (232)
T d2bkaa1 85 FCCLGTTRG---KAGAEGFVRVDRDYVL-KSAELAKAGGCKHFNLLSSKGADKSS------------NFLYLQVKGEVEA 148 (232)
T ss_dssp EECCCCCHH---HHHHHHHHHHHTHHHH-HHHHHHHHTTCCEEEEECCTTCCTTC------------SSHHHHHHHHHHH
T ss_pred ccccccccc---ccchhhhhhhcccccc-eeeecccccCccccccCCccccccCc------------cchhHHHHHHhhh
Confidence 999986432 1235567889999996 99999999999999999999887554 5689999999999
Q ss_pred HHHHHcC-CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccc
Q 022280 161 FIYEKCS-NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235 (300)
Q Consensus 161 ~~~~~~~-~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~ 235 (300)
.+++.+. .++|+||+.+||++... . +..++...+... ...+.....++|++|+|++++.++..+...
T Consensus 149 ~l~~~~~~~~~IlRP~~i~G~~~~~----~-~~~~~~~~~~~~---~~~~~~~~~~I~~~dvA~a~i~~~~~~~~~ 216 (232)
T d2bkaa1 149 KVEELKFDRYSVFRPGVLLCDRQES----R-PGEWLVRKFFGS---LPDSWASGHSVPVVTVVRAMLNNVVRPRDK 216 (232)
T ss_dssp HHHTTCCSEEEEEECCEEECTTGGG----S-HHHHHHHHHHCS---CCTTGGGGTEEEHHHHHHHHHHHHTSCCCS
T ss_pred ccccccccceEEecCceeecCCCcC----c-HHHHHHHHHhhc---cCCcccCCCeEEHHHHHHHHHHHHhcCccC
Confidence 9999876 48999999999986532 1 112222211111 111123456799999999999998886543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.95 E-value=2.8e-28 Score=208.14 Aligned_cols=225 Identities=17% Similarity=0.147 Sum_probs=167.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh-----hhhhcCCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ-----LLLDALPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~-----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
.++||||||||||||++|+++|+++| ++|+++.|++.... .+......++.++++|+.|.+++...++ +
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~---~ 75 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK---Q 75 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT---T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc---C
Confidence 46789999999999999999999999 89999999754321 1111114568889999999888777766 8
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHH
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKV 156 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~ 156 (300)
+++++|+++... ...|..++. ++++++.+.+..++++.||..++.. .+..+..|...|..+|.
T Consensus 76 ~~~~~~~~~~~~-----------~~~~~~~~~-~~l~~a~~~~~~~~v~~Ss~g~~~~-----~~~~~~~~~~~~~~~~~ 138 (312)
T d1qyda_ 76 VDVVISALAGGV-----------LSHHILEQL-KLVEAIKEAGNIKRFLPSEFGMDPD-----IMEHALQPGSITFIDKR 138 (312)
T ss_dssp CSEEEECCCCSS-----------SSTTTTTHH-HHHHHHHHSCCCSEEECSCCSSCTT-----SCCCCCSSTTHHHHHHH
T ss_pred cchhhhhhhhcc-----------cccchhhhh-HHHHHHHHhcCCcEEEEeeccccCC-----CcccccchhhhhhHHHH
Confidence 999999987432 234566664 8888888887778888888655433 33445566788999999
Q ss_pred HHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHhcccc
Q 022280 157 AAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNRWLS 234 (300)
Q Consensus 157 ~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~~ 234 (300)
.++++....+.+++++|++.+||+......+.. .......+.+.+++ ++.++|+|++|+|++++.+++++..
T Consensus 139 ~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 212 (312)
T d1qyda_ 139 KVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLD------GHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT 212 (312)
T ss_dssp HHHHHHHHTTCCBCEEECCEEHHHHTTTSSCTT------CCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG
T ss_pred HHHHhhcccccceEEeccceeecCCccchhhHH------HHhhhcccccccccccccccceeeHHHHHHHHHHHhcCccc
Confidence 999999999999999999999997543211110 01111344555555 4689999999999999999998765
Q ss_pred ccccccceeeecCCCccCHHHHHH
Q 022280 235 EDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 235 ~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
.++ .+|++++++.+|++|+++
T Consensus 213 ~~~---~~~~~~~~~~~s~~e~~~ 233 (312)
T d1qyda_ 213 LNK---TMYIRPPMNILSQKEVIQ 233 (312)
T ss_dssp SSS---EEECCCGGGEEEHHHHHH
T ss_pred cCc---eEEEeCCCcCCCHHHHHH
Confidence 543 156777778899999888
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.95 E-value=3.7e-27 Score=200.14 Aligned_cols=219 Identities=13% Similarity=0.081 Sum_probs=162.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh------hhcCCCceeEEEeecCCchhHHHHHHhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL------LDALPHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
++|||||||||||||++++++|+++| ++|++++|++...... .......+.++.+|+.+.+.+...++
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G---~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--- 75 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--- 75 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH---
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhh---
Confidence 47899999999999999999999999 8999999985543211 11113467788999999888777776
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHH
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSK 155 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK 155 (300)
+.+.|+|+++.. +..++. ++++++...+++++++.||...... +.....+...+...+
T Consensus 76 ~~~~vi~~~~~~---------------~~~~~~-~~~~a~~~~~~~~~~~~s~~~~~~~------~~~~~~~~~~~~~~~ 133 (307)
T d1qyca_ 76 NVDVVISTVGSL---------------QIESQV-NIIKAIKEVGTVKRFFPSEFGNDVD------NVHAVEPAKSVFEVK 133 (307)
T ss_dssp TCSEEEECCCGG---------------GSGGGH-HHHHHHHHHCCCSEEECSCCSSCTT------SCCCCTTHHHHHHHH
T ss_pred hceeeeeccccc---------------ccchhh-HHHHHHHHhccccceeeeccccccc------ccccccccccccccc
Confidence 899999998642 333443 8888888888889988887544322 222333455788888
Q ss_pred HHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--CcccCceeHHHHHHHHHHHHhccc
Q 022280 156 VAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 156 ~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~ 233 (300)
...+..+++.+.+++++||+.+||+....... +... ...+....+++ ++.++|+|++|+|++++.+++++.
T Consensus 134 ~~~~~~~~~~~~~~~i~r~~~v~g~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~ 206 (307)
T d1qyca_ 134 AKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQ------AGLT-APPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPR 206 (307)
T ss_dssp HHHHHHHHHHTCCBEEEECCEEHHHHTTTTTC------TTCS-SCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGG
T ss_pred ccccchhhccCCCceecccceecCCCccchhh------hhhh-hhhcccceeeecccccccCCcHHHHHHHHHHHhcChh
Confidence 99999999999999999999999986432111 0111 11344445554 578999999999999999998875
Q ss_pred cccccccceeeecCCCccCHHHHHH
Q 022280 234 SEDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 234 ~~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
..++ .+||+++++.+|+.|+++
T Consensus 207 ~~~~---~~~~~~~~~~~s~~ei~~ 228 (307)
T d1qyca_ 207 TLNK---TLYLRLPANTLSLNELVA 228 (307)
T ss_dssp GTTE---EEECCCGGGEEEHHHHHH
T ss_pred hcCc---eeEEeCCCCccCHHHHHH
Confidence 5443 267778888999999988
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=2.2e-26 Score=189.31 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=164.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+|++|||||||||||+++++.|+++|++ +.|+.+.|+++... .+...+.++.+|+++.+++.++++ ++|+||
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~-v~v~~~~R~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~---~~d~vi 73 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVRSAQGKE----KIGGEADVFIGDITDADSINPAFQ---GIDALV 73 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTT-CEEEEEESCHHHHH----HTTCCTTEEECCTTSHHHHHHHHT---TCSEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCc-EEEEEEcCCHHHHH----hccCCcEEEEeeeccccccccccc---cceeeE
Confidence 5789999999999999999999999966 56777778754433 234567789999999988887776 899999
Q ss_pred EcccccCccc-------------cccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 82 NCAALSVPRV-------------CENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 82 h~a~~~~~~~-------------~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
|+|+...... ....+.....+|+.++. +++..+.....++..+.|+...+.+... ....+.
T Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~ 147 (252)
T d2q46a1 74 ILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQK-NQIDAAKVAGVKHIVVVGSMGGTNPDHP-----LNKLGN 147 (252)
T ss_dssp ECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHH-HHHHHHHHHTCSEEEEEEETTTTCTTCG-----GGGGGG
T ss_pred EEEeeccccccccchhhhhhcccccccchhhhccccccce-eeccccccccccccccccccccCCCCcc-----cccccc
Confidence 9998654211 11234456678888986 9999988888889999998777654322 011224
Q ss_pred ChhHHHHHHHHHHHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILAL 228 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 228 (300)
..|...+...+......+.+++++||+.+||+...... .. . ... ........+|+|++|+|++++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~~~~~---~~-------~-~~~--~~~~~~~~~~i~~~Dva~a~~~~ 214 (252)
T d2q46a1 148 GNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRE---LL-------V-GKD--DELLQTDTKTVPRADVAEVCIQA 214 (252)
T ss_dssp CCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCTTSSC---EE-------E-EST--TGGGGSSCCEEEHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcccccceeecceEEECCCcchhh---hh-------h-ccC--cccccCCCCeEEHHHHHHHHHHH
Confidence 56788888888888888899999999999998742100 00 0 000 01123456799999999999999
Q ss_pred HhccccccccccceeeecCCC---ccCHHHHHH
Q 022280 229 TNRWLSEDKQMQLLLNVGGPD---RVSRVQMAE 258 (300)
Q Consensus 229 ~~~~~~~~~~~~~i~ni~~~~---~~s~~e~~~ 258 (300)
++++...++ +||++++. ..++.++.+
T Consensus 215 l~~~~~~g~----~~~i~~~~~~~~~~~~~~~~ 243 (252)
T d2q46a1 215 LLFEEAKNK----AFDLGSKPEGTSTPTKDFKA 243 (252)
T ss_dssp TTCGGGTTE----EEEEEECCTTTSCCCCCHHH
T ss_pred hCCccccCc----EEEEeeCCCCCChhHHHHHH
Confidence 998776655 99998744 344555543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=5e-27 Score=189.89 Aligned_cols=193 Identities=16% Similarity=0.165 Sum_probs=137.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh-cCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK-FGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~~~d~vi 81 (300)
.|+|||||||||||++|+++|+++|+. .+|++..|++.... .. +..+..|.. +..+. ...+|+||
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~-~~v~~~~r~~~~~~-------~~---~~~~~~d~~---~~~~~~~~~~d~vi 67 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTL-AKVIAPARKALAEH-------PR---LDNPVGPLA---ELLPQLDGSIDTAF 67 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTC-CEEECCBSSCCCCC-------TT---EECCBSCHH---HHGGGCCSCCSEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCe-EEEEEEeCCchhhc-------cc---ccccccchh---hhhhccccchheee
Confidence 589999999999999999999999953 36787777643211 11 334444432 22332 23689999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKF 161 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~ 161 (300)
||+|..... ..........|+.++. +++++|++.++++++++||..+++.. .+.|+.+|..+|+.
T Consensus 68 ~~~g~~~~~--~~~~~~~~~~~~~~~~-~~~~~a~~~~v~~~i~~Ss~~~~~~~------------~~~y~~~K~~~E~~ 132 (212)
T d2a35a1 68 CCLGTTIKE--AGSEEAFRAVDFDLPL-AVGKRALEMGARHYLVVSALGADAKS------------SIFYNRVKGELEQA 132 (212)
T ss_dssp ECCCCCHHH--HSSHHHHHHHHTHHHH-HHHHHHHHTTCCEEEEECCTTCCTTC------------SSHHHHHHHHHHHH
T ss_pred eeeeeeccc--cccccccccchhhhhh-hccccccccccccccccccccccccc------------ccchhHHHHHHhhh
Confidence 999865322 2245677889999996 99999999999999999999887654 56899999999999
Q ss_pred HHHHcC-CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccc
Q 022280 162 IYEKCS-NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235 (300)
Q Consensus 162 ~~~~~~-~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~ 235 (300)
+++.+. +++|+||+.|||+...... ..++ ..++.....+..+++|++|+|++++.+++++..+
T Consensus 133 l~~~~~~~~~I~Rp~~v~G~~~~~~~-----~~~~------~~~~~~~~~~~~~~i~v~DvA~ai~~~~~~~~~g 196 (212)
T d2a35a1 133 LQEQGWPQLTIARPSLLFGPREEFRL-----AEIL------AAPIARILPGKYHGIEACDLARALWRLALEEGKG 196 (212)
T ss_dssp HTTSCCSEEEEEECCSEESTTSCEEG-----GGGT------TCCCC----CHHHHHHHHHHHHHHHHHHTCCCSE
T ss_pred ccccccccceeeCCcceeCCcccccH-----HHHH------HHHHhhccCCCCcEEEHHHHHHHHHHHHcCCCCC
Confidence 988776 5999999999998753111 0011 1111111123345799999999999999885543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=1.2e-25 Score=184.77 Aligned_cols=216 Identities=15% Similarity=0.175 Sum_probs=160.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
|++|++|||||+++||+++++.|+++| ++|++.+|++++.+.+.+++++...++++|++|++++++++ +++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEG---AKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGG 80 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 568999999999999999999999999 99999999988888888887788888999999999866655 45689
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|++|||||...... +.+.++..+++|+.+++ .+.+. +++.+.++||++||...+.+... .
T Consensus 81 idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~-~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~----------~ 149 (244)
T d1nffa_ 81 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVF-LGIRAVVKPMKEAGRGSIINISSIEGLAGTVA----------C 149 (244)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------B
T ss_pred CeEEEECCcccCCCchhhCCHHHHhHHhhcccchhh-HHHHHHHhHHHhcCcceEEecccccccccccc----------c
Confidence 999999999865432 34457789999999996 55544 44556679999999887665544 6
Q ss_pred ChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.+|..++.+.+.++.+ +..+-|+.+--+-.. . + .. ......+..+..++|+
T Consensus 150 ~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~-----~-----~-----~~---~~~~~pl~R~~~p~di 211 (244)
T d1nffa_ 150 HGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD-----W-----V-----PE---DIFQTALGRAAEPVEV 211 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT-----T-----S-----CT---TCSCCSSSSCBCHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHh-----h-----h-----hH---HHHhccccCCCCHHHH
Confidence 78999999999999877653 345666655432110 0 0 00 0011234568899999
Q ss_pred HHHHHHHHhccccccccccceeeecCCCc
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
|+++++++...... ..++++.+.+|..
T Consensus 212 A~~v~fL~s~~s~~--itG~~i~vDGG~~ 238 (244)
T d1nffa_ 212 SNLVVYLASDESSY--STGAEFVVDGGTV 238 (244)
T ss_dssp HHHHHHHHSGGGTT--CCSCEEEESTTGG
T ss_pred HHHHHHHhChhhCC--CcCCEEEECCCee
Confidence 99999999653211 1233899988753
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.92 E-value=3.5e-25 Score=182.95 Aligned_cols=219 Identities=14% Similarity=0.134 Sum_probs=160.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
+++|++|||||++.||++++++|+++| ++|++.+|+.++..++.++++..+.++++|++|++++++++ +++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAG---ARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999 89999999988888887787788888999999999876655 45689
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|++|||||...... ..+.++..+++|+.+++ .+.++ +++++.++||++||...+.+... .
T Consensus 80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~-~~~~~~~p~m~~~~~G~II~isS~~~~~~~~~----------~ 148 (254)
T d1hdca_ 80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVF-IGMKTVIPAMKDAGGGSIVNISSAAGLMGLAL----------T 148 (254)
T ss_dssp CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------C
T ss_pred ccEEEecCccccccccccccccccchhhhHHhhHHH-HHHHHHHHHHhhcCCCeecccccchhcccccc----------h
Confidence 999999999875432 33456788999999996 55554 44566679999999887665544 6
Q ss_pred ChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce-eHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV-YVRD 220 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~v~D 220 (300)
..|+.||.+++.+.+.++.+ +..+.|+.+.- .+..+.............++..+. .++|
T Consensus 149 ~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T-------------~~~~~~~~~~~~~~~~~~pl~R~g~~Ped 215 (254)
T d1hdca_ 149 SSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYT-------------PMTAETGIRQGEGNYPNTPMGRVGNEPGE 215 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-------------HHHHHHTCCCSTTSCTTSTTSSCB-CHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccC-------------ccchhcCHHHHHHHHhCCCCCCCCCCHHH
Confidence 78999999999999887654 34455555431 122222111111011111234453 6899
Q ss_pred HHHHHHHHHhccc--cccccccceeeecCCCc
Q 022280 221 VVKIILALTNRWL--SEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 221 ~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~~ 250 (300)
+|.++++++.... ..|+ ++.+.+|..
T Consensus 216 vA~~v~fL~S~~a~~itG~----~i~vDGG~t 243 (254)
T d1hdca_ 216 IAGAVVKLLSDTSSYVTGA----ELAVDGGWT 243 (254)
T ss_dssp HHHHHHHHHSGGGTTCCSC----EEEESTTTT
T ss_pred HHHHHHHHhchhhCCCCCc----eEEeCCCcc
Confidence 9999999996532 2333 899988753
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.4e-26 Score=190.42 Aligned_cols=221 Identities=15% Similarity=0.148 Sum_probs=161.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
+++|+++||||+++||+++++.|+++| ++|++.+|+++..+.+.++++.....+.+|++|++++++++ +++++
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G---~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARG---AKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGE 78 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCC
Confidence 578999999999999999999999999 99999999987777777777777888999999999865555 45789
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|++||+||...... ..+.++..+++|+.+++ .+.++ +++++-++||++||.....+.+. .
T Consensus 79 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~-~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~----------~ 147 (243)
T d1q7ba_ 79 VDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVF-RLSKAVMRAMMKKRHGRIITIGSVVGTMGNGG----------Q 147 (243)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT----------C
T ss_pred cceehhhhhhccccccccccccccccccceeechhh-hhHHHHHHHHHHcCCCEeeeecchhhcCCCCC----------C
Confidence 999999999865432 33456788999999996 55554 45566679999999887655444 6
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.||.+++.+.+.++. ++..+.|+.+--+.. ............ .. .+...+..++|+
T Consensus 148 ~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~-----~~~~~~~~~~~~-~~-------~pl~R~~~pedv 214 (243)
T d1q7ba_ 148 ANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMT-----RALSDDQRAGIL-AQ-------VPAGRLGGAQEI 214 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-----HTSCHHHHHHHH-TT-------CTTSSCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhh-----hhhhhhHHHHHH-hc-------CCCCCCCCHHHH
Confidence 7899999999999987765 345566666532210 011111111111 11 134567889999
Q ss_pred HHHHHHHHhccccccccccceeeecCCCc
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
|.++.+++...... ..++++++.+|..
T Consensus 215 A~~v~fL~S~~s~~--itGq~i~vdGG~~ 241 (243)
T d1q7ba_ 215 ANAVAFLASDEAAY--ITGETLHVNGGMY 241 (243)
T ss_dssp HHHHHHHHSGGGTT--CCSCEEEESTTSS
T ss_pred HHHHHHHhCchhcC--CcCCeEEECCCeE
Confidence 99999999653321 1233899988753
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.92 E-value=1.4e-24 Score=178.91 Aligned_cols=222 Identities=16% Similarity=0.151 Sum_probs=155.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhhcCCCceeEEEeecCCchhHHHHH----HhcC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFG 75 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~ 75 (300)
|++|++|||||+++||+++++.|+++| ++|++.+|++.+ .....+..+.++.++.+|++|+++++.++ ++++
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~G---a~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G 79 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEG---ADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFG 79 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999 899999998643 33444556777888999999999876655 4578
Q ss_pred CCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|++|||||+.... .+.+.++..+++|+.+++ .+.++ +++++.+++|++||.....+.+.
T Consensus 80 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~-~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~---------- 148 (247)
T d2ew8a1 80 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGF-LMAKAFVPGMKRNGWGRIINLTSTTYWLKIEA---------- 148 (247)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGGSCCSS----------
T ss_pred CCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhh-HHHHHHHhHHHhcCCCCccccccchhcccCcc----------
Confidence 999999999987543 234567889999999996 55444 45566679999999887655444
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.||.+++.+.+.++. ++..+.|+.+--+...... ..... ....-.......+..++|
T Consensus 149 ~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~----~~~~~-------~~~~~~~~~l~r~~~ped 217 (247)
T d2ew8a1 149 YTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASA----LSAMF-------DVLPNMLQAIPRLQVPLD 217 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-----------------------------CTTSSSCSCCCTHH
T ss_pred cccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccc----cchhH-------HHHHHHhccCCCCCCHHH
Confidence 67899999999998887764 3455667666433211000 00000 000001123456788999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+++++++...... -.++++.+.+|.
T Consensus 218 vA~~v~fL~S~~s~~--itG~~i~vDGG~ 244 (247)
T d2ew8a1 218 LTGAAAFLASDDASF--ITGQTLAVDGGM 244 (247)
T ss_dssp HHHHHHHHTSGGGTT--CCSCEEEESSSC
T ss_pred HHHHHHHHhCchhcC--CcCCeEEECCCE
Confidence 999999999653211 123388888874
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=3.8e-25 Score=181.72 Aligned_cols=221 Identities=17% Similarity=0.128 Sum_probs=159.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+++|++|||||+++||++++++|+++| ++|++.+|+.++..++.++.+ .+..+.+|++|++++++++++++++|++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~~l~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~g~iDil 78 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASG---AKVVAVTRTNSDLVSLAKECP-GIEPVCVDLGDWDATEKALGGIGPVDLL 78 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHST-TCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhcC-CCeEEEEeCCCHHHHHHHHHHcCCCeEE
Confidence 368999999999999999999999999 999999999877777776654 4667899999999999999999999999
Q ss_pred EEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hc-cCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 81 VNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----EN-KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 81 ih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~-~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
|||||...... +.+.++..+++|+.+++ .+.+.+. +. +.+++|++||.....+.+. ...|
T Consensus 79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~-~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~----------~~~Y 147 (242)
T d1cyda_ 79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVF-QVSQMVARDMINRGVPGSIVNVSSMVAHVTFPN----------LITY 147 (242)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTT----------BHHH
T ss_pred EECCccccchhHHHHHHHHHHHHHHHHhccch-HHHHHhchhhhhhcccCcccccchhhccccCCc----------cccc
Confidence 99999865432 34456788999999996 6655433 22 3469999999887666544 6789
Q ss_pred HHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 152 GKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
+.+|.+++.+.+.++.+ +..+-|+.+-.+....... ...+..... . ..++..+..++|+|++
T Consensus 148 ~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~---~~~~~~~~~-~-------~~pl~R~~~peeva~~ 216 (242)
T d1cyda_ 148 SSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSA---DPEFARKLK-E-------RHPLRKFAEVEDVVNS 216 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTC---CHHHHHHHH-H-------HSTTSSCBCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcC---CHHHHHHHH-h-------cCCCCCCcCHHHHHHH
Confidence 99999999999877653 3445565553221000000 001111111 0 0134568899999999
Q ss_pred HHHHHhccccccccccceeeecCCC
Q 022280 225 ILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+.+++...... ..++++.+.+|.
T Consensus 217 v~fL~S~~s~~--itG~~i~vDGG~ 239 (242)
T d1cyda_ 217 ILFLLSDRSAS--TSGGGILVDAGY 239 (242)
T ss_dssp HHHHHSGGGTT--CCSSEEEESTTG
T ss_pred HHHHhCchhcC--cCCceEEeCcch
Confidence 99999653211 123388888874
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.6e-25 Score=180.60 Aligned_cols=219 Identities=18% Similarity=0.166 Sum_probs=160.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|.+|++|||||+++||+++++.|+++| ++|++.+|+.++.+++.++.+ .+..+.+|++|.+++++++++++++|++
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G---~~V~~~~r~~~~l~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~g~iDil 80 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATG---ARVVAVSRTQADLDSLVRECP-GIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHST-TCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC-CCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence 357899999999999999999999999 899999999877777776654 4667899999999999999999999999
Q ss_pred EEcccccCccc----cccChhhhhhcccccchHHHHHhhh----h-ccCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 81 VNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----E-NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 81 ih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~-~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
|||||...... +.+.++..+++|+.+++ .+.+.+. + .+.+++|++||.....+.+. ...|
T Consensus 81 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~-~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~----------~~~Y 149 (244)
T d1pr9a_ 81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVI-QVSQIVARGLIARGVPGAIVNVSSQCSQRAVTN----------HSVY 149 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTT----------BHHH
T ss_pred EeccccccccchhhhhHHHHHHHHHHhhhhhh-HHHHHhhhHHHHhCCcceEeecccccccccccc----------hhhh
Confidence 99999865432 34567788999999986 5544432 2 34569999999887665544 6789
Q ss_pred HHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHH
Q 022280 152 GKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKI 224 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 224 (300)
+.||.+++.+.+.++. ++..+.|+.|.-+....... ......... .. .++..+..++|+|++
T Consensus 150 ~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~---~~~~~~~~~-~~-------~pl~R~~~peevA~~ 218 (244)
T d1pr9a_ 150 CSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS---DPHKAKTML-NR-------IPLGKFAEVEHVVNA 218 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSC---SHHHHHHHH-TT-------CTTCSCBCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhcc---ChHHHHHHH-hc-------CCCCCCcCHHHHHHH
Confidence 9999999999987754 34557777665332110000 011121111 11 124568889999999
Q ss_pred HHHHHhccc--cccccccceeeecCCC
Q 022280 225 ILALTNRWL--SEDKQMQLLLNVGGPD 249 (300)
Q Consensus 225 ~~~~~~~~~--~~~~~~~~i~ni~~~~ 249 (300)
+.+++.... ..|+ ++.+.+|-
T Consensus 219 v~fL~S~~a~~itG~----~i~vDGG~ 241 (244)
T d1pr9a_ 219 ILFLLSDRSGMTTGS----TLPVEGGF 241 (244)
T ss_dssp HHHHHSGGGTTCCSC----EEEESTTG
T ss_pred HHHHhCchhCCcCCc----EEEECccH
Confidence 999996532 2333 88888763
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.91 E-value=3.8e-24 Score=176.72 Aligned_cols=220 Identities=14% Similarity=0.115 Sum_probs=158.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHH----Hh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVA----LK 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~----~~ 73 (300)
+.+|.+|||||+++||+++++.|+++| ++|++.+|+.+..+.+.++ .+..+..+.+|++|++++++++ ++
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~G---a~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 84 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSV---SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE 84 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTS---SEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999 8999999987666554433 3556778999999999866655 45
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|++||+|+...... ..+.++..+++|+.+++ .+.++ +++++.++||++||.....+.+.
T Consensus 85 ~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~-~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~-------- 155 (251)
T d2c07a1 85 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLF-YITQPISKRMINNRYGRIINISSIVGLTGNVG-------- 155 (251)
T ss_dssp CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT--------
T ss_pred cCCceeeeeccccccccccccccHHHHhhhheeeehhhh-hhhhhcCcccccCCCeEEEEECCHHhcCCCCC--------
Confidence 689999999999865432 33467788999999996 55544 45566679999999887655443
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeH
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYV 218 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 218 (300)
...|+.||.+++.+.+.++. ++..+.|+.+-.+.. ......+..... ... ++..+..+
T Consensus 156 --~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~-----~~~~~~~~~~~~-~~~-------pl~R~~~p 220 (251)
T d2c07a1 156 --QANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMT-----DKISEQIKKNII-SNI-------PAGRMGTP 220 (251)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------CCHHHHHHHH-TTC-------TTSSCBCH
T ss_pred --CHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccc-----cccCHHHHHHHH-hcC-------CCCCCcCH
Confidence 67899999999999987754 345677777754321 112223332222 211 24467889
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+|.++.+++...... -.++++.+.+|-
T Consensus 221 edvA~~v~fL~S~~s~~--itG~~i~vDGG~ 249 (251)
T d2c07a1 221 EEVANLACFLSSDKSGY--INGRVFVIDGGL 249 (251)
T ss_dssp HHHHHHHHHHHSGGGTT--CCSCEEEESTTS
T ss_pred HHHHHHHHHHhCchhCC--CcCcEEEECCCc
Confidence 99999999999653311 113388888873
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.91 E-value=1.4e-24 Score=180.46 Aligned_cols=228 Identities=12% Similarity=0.119 Sum_probs=154.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC-chhhhh----hcCCCceeEEEeecCCchhHHHHHH---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP-LPQLLL----DALPHSFVFFDVDLKSGSGFDAVAL--- 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~-~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~--- 72 (300)
|++|++|||||+++||+++++.|+++| ++|++.+|+.. ..+.+. ...+..+.++.+|++|+++++++++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~G---a~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQG---ADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999 89999999743 333332 2335577789999999998766554
Q ss_pred -hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccCCCCCCCCCC
Q 022280 73 -KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 -~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
+++++|++|||||...... +.+.++..+++|+.+++ .+ +..+++.+.++||++||.....+.+.
T Consensus 79 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~-~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~------ 151 (260)
T d1x1ta1 79 RQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVF-HGTAAALPHMKKQGFGRIINIASAHGLVASAN------ 151 (260)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT------
T ss_pred HHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccc-cccchhhhhHhhcCCceEeecccccceeccCC------
Confidence 5689999999999875432 34457788999999986 54 44455566679999999887665444
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHH-HhcCC-ceeecc--Ccc
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSV-LSKGE-KVEFFH--DEC 212 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~--~~~ 212 (300)
...|+.||.+++.+.+.++. ++..+.||.+--+.... ......... ..... ...... .+.
T Consensus 152 ----~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Pl 222 (260)
T d1x1ta1 152 ----KSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK-----QISALAEKNGVDQETAARELLSEKQPS 222 (260)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-----------------------------CHHHHCTT
T ss_pred ----cchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhh-----hhhhhhhhcCCChHHHHHHHHHhcCCC
Confidence 67899999999999887654 34567777764332110 000000000 00000 000011 135
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
..+..++|+|+++++++..... -..++++++.+|-
T Consensus 223 ~R~g~pediA~~v~fL~S~~a~--~itG~~i~vDGG~ 257 (260)
T d1x1ta1 223 LQFVTPEQLGGTAVFLASDAAA--QITGTTVSVDGGW 257 (260)
T ss_dssp CCCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhChhhC--CCcCCEEEECcch
Confidence 6788999999999999965321 1123388888873
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.91 E-value=9e-25 Score=181.14 Aligned_cols=227 Identities=15% Similarity=0.143 Sum_probs=161.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
+++|++|||||+++||+++++.|+++| ++|++.+|+.+....+.++++..+..+.+|++|++++++++ +++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 79 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREG---ARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGS 79 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTT---EEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 357999999999999999999999999 99999999988888887777888888999999999876655 45689
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hc-cCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----EN-KENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~-~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+|++||+||...... +.+.++..+++|+.|++ .+.+++. +. ..++||++||.....+.+.
T Consensus 80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~-~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~---------- 148 (256)
T d1k2wa_ 80 IDILVNNAALFDLAPIVEITRESYDRLFAINVSGTL-FMMQAVARAMIAGGRGGKIINMASQAGRRGEAL---------- 148 (256)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTT----------
T ss_pred ccEEEeecccccccccccCCHHHHHhhhceeeeccc-cchhhccchhHHhccCCccccccchhhcccccc----------
Confidence 999999999865432 34457788999999986 6555432 22 3469999999887655544
Q ss_pred CChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh-cCCc----eeec--cCccc
Q 022280 148 VNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLS-KGEK----VEFF--HDECR 213 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~--~~~~~ 213 (300)
...|+.||.+++.+.+.++.+ +..+.||.+-.+. ...+...... .... .... ..++.
T Consensus 149 ~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Plg 219 (256)
T d1k2wa_ 149 VGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEH---------WDGVDAKFADYENLPRGEKKRQVGAAVPFG 219 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTT---------HHHHHHHHHHHHTCCTTHHHHHHHHHSTTS
T ss_pred ccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchh---------hhhhhhhhhhhccCChHHHHHHHHhcCCCC
Confidence 678999999999999877653 3456666554321 0011111000 0000 0000 01356
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
.+..++|+|.++++++...... -.++++.+.+|..+|
T Consensus 220 R~~~p~evA~~v~fL~S~~a~~--iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 220 RMGRAEDLTGMAIFLATPEADY--IVAQTYNVDGGNWMS 256 (256)
T ss_dssp SCBCHHHHHHHHHHTTSGGGTT--CCSCEEEESTTSSCC
T ss_pred CCcCHHHHHHHHHHHhCchhCC--ccCceEEECcchhhC
Confidence 7889999999999998653211 123389999987654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.4e-24 Score=178.91 Aligned_cols=220 Identities=18% Similarity=0.167 Sum_probs=153.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
+++|++|||||++.||+++++.|+++| ++|++.+|+++..+ ..+.. ...++++|++|.+++++++ +++++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~-~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 76 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREG---ALVALCDLRPEGKE-VAEAI--GGAFFQVDLEDERERVRFVEEAAYALGR 76 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSTTHHH-HHHHH--TCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHH-HHHHc--CCeEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999999 89999999866433 33333 2456899999998765554 45789
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|++|||||...... +.++++..+++|+.+++ .+.+++ ++++-++||++||...+.+.+. .
T Consensus 77 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~-~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~~----------~ 145 (248)
T d2d1ya1 77 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPM-HLSALAAREMRKVGGGAIVNVASVQGLFAEQE----------N 145 (248)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHTTTCEEEEEECCGGGTSBCTT----------B
T ss_pred CCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHh-hhhhhhcccccccccccccccccccccccccc----------c
Confidence 999999999865432 33456788999999996 655554 4456679999999887665544 6
Q ss_pred ChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCc----eeec-c-CcccCc
Q 022280 149 NVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK----VEFF-H-DECRCP 215 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~-~~~~~~ 215 (300)
..|+.||.+++.+.+.++.+ +..+.|+.+--+ +..+....... .... . .++..+
T Consensus 146 ~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~-------------~~~~~~~~~~~~~~~~~~~~~~~pl~R~ 212 (248)
T d2d1ya1 146 AAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATE-------------AVLEAIALSPDPERTRRDWEDLHALRRL 212 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH-------------HHHHHHC--------CHHHHTTSTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCc-------------hHHHHhhcCCCHHHHHHHHHhcCCCCCC
Confidence 78999999999998877653 344555554321 12222111100 0001 1 135678
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
..++|++.++.+++..... -..++++.+.+|-.-|
T Consensus 213 ~~pedia~~v~fL~S~~s~--~itG~~i~vDGG~tas 247 (248)
T d2d1ya1 213 GKPEEVAEAVLFLASEKAS--FITGAILPVDGGMTAS 247 (248)
T ss_dssp BCHHHHHHHHHHHHSGGGT--TCCSCEEEESTTGGGB
T ss_pred cCHHHHHHHHHHHhCchhc--CCCCcEEEcCcCcccc
Confidence 8999999999999965321 1123389998875433
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.91 E-value=1.1e-24 Score=180.10 Aligned_cols=217 Identities=18% Similarity=0.199 Sum_probs=156.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
|++|++|||||++.||+++++.|+++| ++|++.+|+++..+++.++++....++++|++|.++++.++ +++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G---a~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 80 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEG---AKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 568999999999999999999999999 89999999987777777777778888999999998865555 45789
Q ss_pred CCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 77 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
+|++|||||..... .+.+.++..+++|+.+++ .+.+++.. .+.++||++||.....+.+. ..
T Consensus 81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~-~~~~~~~~~m~~~~G~Iv~isS~~~~~~~~~----------~~ 149 (253)
T d1hxha_ 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVF-IGCQQGIAAMKETGGSIINMASVSSWLPIEQ----------YA 149 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTTCEEEEEECCGGGTSCCTT----------BH
T ss_pred CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHH-HHHHHHHHHHHhcCCceecccchhhhcCccc----------cc
Confidence 99999999986543 234457789999999986 55444332 22369999999887655433 67
Q ss_pred hhHHHHHHHHHHHHHHcCC---------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCce----eecc-CcccCc
Q 022280 150 VYGKSKVAAEKFIYEKCSN---------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKV----EFFH-DECRCP 215 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~~---------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~ 215 (300)
.|+.||.+++.+.+.++.+ +..+-|+.+..+ +....+.....- .... .....+
T Consensus 150 ~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~-------------~~~~~~~~~~~~~~~~~~~~~~~~gr~ 216 (253)
T d1hxha_ 150 GYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTP-------------MMQASLPKGVSKEMVLHDPKLNRAGRA 216 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCH-------------HHHHHSCTTCCHHHHBCBTTTBTTCCE
T ss_pred cccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCH-------------hHHhhCcchhhHHHHHhCccccccCCC
Confidence 8999999999988866543 344556555322 122111111000 0000 123468
Q ss_pred eeHHHHHHHHHHHHhccc--cccccccceeeecCC
Q 022280 216 VYVRDVVKIILALTNRWL--SEDKQMQLLLNVGGP 248 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~ 248 (300)
..++|+|+++++++.... ..|+ ++++.+|
T Consensus 217 ~~pedvA~~v~fL~S~~s~~itG~----~i~VDGG 247 (253)
T d1hxha_ 217 YMPERIAQLVLFLASDESSVMSGS----ELHADNS 247 (253)
T ss_dssp ECHHHHHHHHHHHHSGGGTTCCSC----EEEESSS
T ss_pred CCHHHHHHHHHHHhChhhCCCcCc----EEEECcc
Confidence 889999999999996532 2333 8888876
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.2e-24 Score=178.48 Aligned_cols=219 Identities=17% Similarity=0.188 Sum_probs=158.3
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHH----Hhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVA----LKF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~----~~~ 74 (300)
++|++|||||++.||+++++.|+++| ++|++.+|++++.+++.++ .+..+.++++|++|++++++++ +++
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999 8999999987666555433 3567778999999999866655 456
Q ss_pred CCCCEEEEcccccCcc---ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR---VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~---~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
+++|++|||||..... .+.++++..+++|+.+++ .+.+. +++.+.+++|++||.....+.+.
T Consensus 87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~-~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~~---------- 155 (255)
T d1fmca_ 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFF-HLSQLVAPEMEKNGGGVILTITSMAAENKNIN---------- 155 (255)
T ss_dssp SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTCCCTT----------
T ss_pred CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhh-hhHHHHHhhhccccccccccccccchhccccc----------
Confidence 8999999999986543 234457788999999986 55444 44556668999999887666544
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.||.+++.+.+.++. ++..+-||.|-.+.... ........... .. .++..+..++|
T Consensus 156 ~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~----~~~~e~~~~~~-~~-------~pl~R~g~ped 223 (255)
T d1fmca_ 156 MTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS----VITPEIEQKML-QH-------TPIRRLGQPQD 223 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT----TCCHHHHHHHH-HT-------CSSCSCBCHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhc----cCCHHHHHHHH-hc-------CCCCCCcCHHH
Confidence 67999999999999887664 34556777664331111 11122222222 11 12446788999
Q ss_pred HHHHHHHHHhccc--cccccccceeeecCCCc
Q 022280 221 VVKIILALTNRWL--SEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 221 ~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~~ 250 (300)
+|.++++++.... ..|+ ++.+.+|..
T Consensus 224 vA~~v~fL~S~~s~~itG~----~i~vDGG~~ 251 (255)
T d1fmca_ 224 IANAALFLCSPAASWVSGQ----ILTVSGGGV 251 (255)
T ss_dssp HHHHHHHHHSGGGTTCCSC----EEEESTTSC
T ss_pred HHHHHHHHhCchhcCCcCC----EEEECcCcc
Confidence 9999999996532 2334 899988853
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.91 E-value=3.5e-24 Score=175.33 Aligned_cols=212 Identities=19% Similarity=0.178 Sum_probs=147.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
+++|++|||||+++||+++++.|+++| ++|++.+|+.+... .+..+++|++|++++++++ +++++
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~G---a~V~~~~r~~~~~~--------~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 73 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADG---HKVAVTHRGSGAPK--------GLFGVEVDVTDSDAVDRAFTAVEEHQGP 73 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSSCCCT--------TSEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCcchhc--------CceEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999999 99999999865533 3456899999999866554 45689
Q ss_pred CCEEEEcccccCcc----ccccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|++|||||..... .+.+.++..+++|+.+++ .+ +..+++.+.++||++||.....+... .
T Consensus 74 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~-~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~----------~ 142 (237)
T d1uzma1 74 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF-RVAQRASRSMQRNKFGRMIFIGSVSGLWGIGN----------Q 142 (237)
T ss_dssp CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEEECCCCC-----C----------C
T ss_pred ceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhh-hhhhhhhhcccccCCCceEEEcchhhccCCcc----------c
Confidence 99999999986542 234567889999999985 44 44455667779999999877655443 6
Q ss_pred ChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.||.+++.+.+.++.+ +..+.|+.+.-+.. ..+..... +..... .+...+..++|+
T Consensus 143 ~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~-----~~~~~~~~-~~~~~~-------~pl~R~~~pedv 209 (237)
T d1uzma1 143 ANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMT-----RALDERIQ-QGALQF-------IPAKRVGTPAEV 209 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-----HHSCHHHH-HHHGGG-------CTTCSCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhh-----hccCHHHH-HHHHhc-------CCCCCCcCHHHH
Confidence 78999999999998877653 34566666642210 00011111 111111 134568899999
Q ss_pred HHHHHHHHhccccccccccceeeecCCC
Q 022280 222 VKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
|.++++++...... -.++++.+.+|-
T Consensus 210 A~~v~fL~S~~s~~--itG~~i~vdGG~ 235 (237)
T d1uzma1 210 AGVVSFLASEDASY--ISGAVIPVDGGM 235 (237)
T ss_dssp HHHHHHHHSGGGTT--CCSCEEEESTTT
T ss_pred HHHHHHHhCchhcC--CcCCeEEECCCC
Confidence 99999999653211 113388888874
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=2.9e-24 Score=177.36 Aligned_cols=222 Identities=16% Similarity=0.152 Sum_probs=155.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh----hcCCCceeEEEeecCCchhHHHHH----H
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL----DALPHSFVFFDVDLKSGSGFDAVA----L 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~----~ 72 (300)
|++|++|||||+++||+++++.|+++| ++|++.+|+.++..+.. +..+..+.++.+|++|++++++++ +
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~G---a~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAG---CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999 89999999876654433 333566778999999999866655 4
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeecccc-ccCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQV-YEGVKSFYKEED 143 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~-~~~~~~~~~E~~ 143 (300)
+++++|++|||||...... +.+.++..+++|+.+++ .+.++ +++.+.+++|++||... ..+...
T Consensus 80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~-~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~------ 152 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTY-YVCREAFSLLRESDNPSIINIGSLTVEEVTMPN------ 152 (251)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSS------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhh-hhhhhhhhcccccccccccccccchhccccCcc------
Confidence 5789999999999765432 34467788999999996 55444 44566679999998654 333322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+++.+.+.++. ++..+.||.+-.+....... ......... .. .++..+.
T Consensus 153 ----~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~---~~~~~~~~~-~~-------~pl~R~~ 217 (251)
T d1vl8a_ 153 ----ISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS---DPEKLDYML-KR-------IPLGRTG 217 (251)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT---CHHHHHHHH-HT-------CTTSSCB
T ss_pred ----ccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccC---CHHHHHHHH-hc-------CCCCCCC
Confidence 56899999999999887654 44567777764332100000 011122211 11 1345678
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.++|+|+++++++...... ..++++.+.+|.
T Consensus 218 ~pedvA~~v~fL~S~~a~~--itG~~i~vDGG~ 248 (251)
T d1vl8a_ 218 VPEDLKGVAVFLASEEAKY--VTGQIIFVDGGW 248 (251)
T ss_dssp CGGGGHHHHHHHHSGGGTT--CCSCEEEESTTG
T ss_pred CHHHHHHHHHHHhCchhCC--CcCcEEEeCcCe
Confidence 8999999999999653321 123388888874
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=7.7e-25 Score=181.69 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=142.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|++|++|||||++.||+++++.|+++| ++|++.+|++++.++..+++ ...+..+.+|++++++++.+++ +
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~G---a~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFG---AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999 89999999876665554432 4567789999999998766554 4
Q ss_pred c-CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 F-GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~-~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
+ +.+|++|||||..... .+.++++..+++|+.+++ .+.++ +++.+.++||++||.....+...
T Consensus 83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~-~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~------- 154 (259)
T d1xq1a_ 83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAY-HLSQLAHPLLKASGCGNIIFMSSIAGVVSASV------- 154 (259)
T ss_dssp HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSCEEEEEC-----------------
T ss_pred hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhhe-eeehhhhhcccccccccccccccccccccccc-------
Confidence 5 5799999999986543 234467788999999996 55554 44566679999999876655433
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+++.+.+.++. ++..+-|+.+--+... ........+.. ....++..+..
T Consensus 155 ---~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~-----~~~~~~~~~~~-------~~~~pl~R~~~ 219 (259)
T d1xq1a_ 155 ---GSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAE-----AVYDDEFKKVV-------ISRKPLGRFGE 219 (259)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-------------------------------------CC
T ss_pred ---cccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhh-----hhchHHHHHHH-------HhCCCCCCCcC
Confidence 67899999999999987765 3445666655432110 00000000000 00113456788
Q ss_pred HHHHHHHHHHHHhccc--cccccccceeeecCCCcc
Q 022280 218 VRDVVKIILALTNRWL--SEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~~~ 251 (300)
++|+|.++++|+.... ..|+ ++.+.+|..+
T Consensus 220 pedvA~~v~fL~S~~s~~iTG~----~i~vDGG~s~ 251 (259)
T d1xq1a_ 220 PEEVSSLVAFLCMPAASYITGQ----TICVDGGLTV 251 (259)
T ss_dssp GGGGHHHHHHHTSGGGTTCCSC----EEECCCCEEE
T ss_pred HHHHHHHHHHHhCchhcCCcCc----EEEeCCCEEC
Confidence 9999999999996432 2333 8888887543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.91 E-value=1.6e-24 Score=179.02 Aligned_cols=221 Identities=17% Similarity=0.178 Sum_probs=154.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHH----Hhc
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVA----LKF 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~----~~~ 74 (300)
+++|++|||||+++||+++++.|+++| ++|++.+|+.+..+...+.+ +..+.++.+|++|++++++++ +++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEG---AKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999 89999999877666555443 456778999999999866555 457
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCC-eEEEeeccccccCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKEN-LLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~-~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++|++|||||...... +.+.++..+++|+.+++ .+.++ +++.+.+ ++|++||...+.+.+.
T Consensus 81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~-~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~-------- 151 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVF-FGTRLGIQRMKNKGLGASIINMSSIEGFVGDPS-------- 151 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTT--------
T ss_pred CCceEEEeccccccccchhcccccchhhhccccccccc-hhHHHHHHHHHhcCCCCceEeeeccceeccCCC--------
Confidence 89999999999875432 34456788999999986 55554 4445554 8999999877655433
Q ss_pred CCCChhHHHHHHHHHHHHHHcC---------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS---------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~---------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+++.+.+.++. ++..+.|+.+-.+... ..+.. .... ... ...++..+.
T Consensus 152 --~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~-----~~~~~--~~~~-~~~----~~~pl~R~~ 217 (251)
T d1zk4a1 152 --LGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVD-----DLPGA--EEAM-SQR----TKTPMGHIG 217 (251)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHH-----TSTTH--HHHH-TST----TTCTTSSCB
T ss_pred --chhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHH-----hcCCH--HHHH-HHH----hCCCCCCCc
Confidence 57899999999988876543 3345666666432100 00000 0000 100 011345688
Q ss_pred eHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.++|+|.++++++...... -.++++.+.+|-
T Consensus 218 ~pedvA~~v~fL~S~~s~~--itG~~i~vDGG~ 248 (251)
T d1zk4a1 218 EPNDIAYICVYLASNESKF--ATGSEFVVDGGY 248 (251)
T ss_dssp CHHHHHHHHHHHHSGGGTT--CCSCEEEESTTG
T ss_pred CHHHHHHHHHHHhCchhCC--CcCcEEEECccc
Confidence 9999999999999653211 113388888873
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=2.8e-23 Score=170.53 Aligned_cols=216 Identities=14% Similarity=0.096 Sum_probs=154.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
|++|++|||||+++||+++++.|+++| ++|++.+|+.++.+...+.+ +..++.+|++|++++++++ +++++
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G---~~V~~~~r~~~~l~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 77 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEG---ARLVACDIEEGPLREAAEAV--GAHPVVMDVADPASVERGFAEALAHLGR 77 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTT--TCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHc--CCeEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 457899999999999999999999999 99999999977777666654 3567899999999876654 45689
Q ss_pred CCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhh----hccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|++|||||..... .+.+.++..+++|+.+++ .+.+++. +.+.+.++++||....+. +. .
T Consensus 78 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~-~~~~~~~~~m~~~~~~~i~~~ss~~~~~~-~~----------~ 145 (242)
T d1ulsa_ 78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSF-LVAKAASEAMREKNPGSIVLTASRVYLGN-LG----------Q 145 (242)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHHHHTTTCCEEEEEECCGGGGCC-TT----------C
T ss_pred ceEEEECCcccccCchhhCcchhhhccccccchhhh-hhhhhccccccccccceeeeeccccccCC-CC----------C
Confidence 99999999987543 234457788999999986 6555544 445557777777543332 22 5
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
..|+.||.+++.+.+.++. ++..+.|+.+--+-. ...+........ .. .+...+..++|+
T Consensus 146 ~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~-----~~~~~~~~~~~~-~~-------~pl~R~~~pedi 212 (242)
T d1ulsa_ 146 ANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMT-----AKVPEKVREKAI-AA-------TPLGRAGKPLEV 212 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTT-----SSSCHHHHHHHH-HT-------CTTCSCBCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhh-----hcCCHHHHHHHH-hc-------CCCCCCCCHHHH
Confidence 6899999999999887654 345677777753321 122222222222 21 134467789999
Q ss_pred HHHHHHHHhccc--cccccccceeeecCCCc
Q 022280 222 VKIILALTNRWL--SEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 222 a~~~~~~~~~~~--~~~~~~~~i~ni~~~~~ 250 (300)
|.++.+++.... ..|+ ++.+.+|..
T Consensus 213 a~~v~fL~S~~s~~itG~----~i~vDGG~t 239 (242)
T d1ulsa_ 213 AYAALFLLSDESSFITGQ----VLFVDGGRT 239 (242)
T ss_dssp HHHHHHHHSGGGTTCCSC----EEEESTTTT
T ss_pred HHHHHHHhchhhCCCCCc----EEEECCCcc
Confidence 999999996532 2344 899988754
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.90 E-value=5.3e-24 Score=176.51 Aligned_cols=226 Identities=14% Similarity=0.162 Sum_probs=155.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHH----
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVA---- 71 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~---- 71 (300)
+++|++|||||+++||+++++.|+++| ++|++.+|+++..+.....+ +.++..+++|++|+++++.++
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 78 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEG---AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT 78 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999 89999999876655443322 346777899999999866655
Q ss_pred HhcCCCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCC
Q 022280 72 LKFGQPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 72 ~~~~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
++++++|++|||||+.... .+.+.++..+++|+.+++ .+.++ +++.+.++||++||.....+.+.
T Consensus 79 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~-~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~----- 152 (258)
T d1iy8a_ 79 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVF-LGLEKVLKIMREQGSGMVVNTASVGGIRGIGN----- 152 (258)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEECCGGGTSBCSS-----
T ss_pred HHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchh-hhhhhhHhhhhhhcCCCCcccccHhhccCCCC-----
Confidence 4578999999999975321 234567789999999996 65554 44456679999999887655444
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCC---CCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTIS---PVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.||.+++.+.+.++. ++..+.|+.+.-+.... ............... . ..++
T Consensus 153 -----~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~-------~~pl 219 (258)
T d1iy8a_ 153 -----QSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFI-Q-------VNPS 219 (258)
T ss_dssp -----BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHH-T-------TCTT
T ss_pred -----chHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHH-h-------cCCC
Confidence 67999999999998887654 34556666664221000 000000001111111 0 1134
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
..+..++|+|.++++++..... -..++++.+.+|..
T Consensus 220 ~R~~~p~dvA~~v~fL~S~~s~--~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 220 KRYGEAPEIAAVVAFLLSDDAS--YVNATVVPIDGGQS 255 (258)
T ss_dssp CSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTTTT
T ss_pred CCCcCHHHHHHHHHHHhCchhc--CCcCceEEcCcchh
Confidence 5688999999999999965321 11233899988864
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.90 E-value=8.4e-24 Score=175.47 Aligned_cols=225 Identities=15% Similarity=0.113 Sum_probs=155.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHHH----h
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVAL----K 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~----~ 73 (300)
|++|++|||||++.||+++++.|+++| ++|++.+|++++.++..+++ +....++.+|++|+++++++++ +
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLG---ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999 89999999877666554433 4567788999999998766554 4
Q ss_pred cC-CCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FG-QPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~-~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++ ++|++|||||..... .+.+.++..+++|+.+++ .+.++ +++.+.+++|++||.....+.+.
T Consensus 83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~-~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~------- 154 (259)
T d2ae2a_ 83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAY-HLSVLAHPFLKASERGNVVFISSVSGALAVPY------- 154 (259)
T ss_dssp TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTSSEEEEEECCGGGTSCCTT-------
T ss_pred hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeE-EEEeeccchhhhhccccccccccccccccccc-------
Confidence 55 699999999986543 234456789999999996 55554 44456679999999877655444
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.+++.+.+.++.+ +..+.|+.|--+................+.. . ..++..+..
T Consensus 155 ---~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~-~-------~~pl~R~g~ 223 (259)
T d2ae2a_ 155 ---EAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLI-D-------RCALRRMGE 223 (259)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHH-H-------TSTTCSCBC
T ss_pred ---ccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHH-h-------cCCCCCCcC
Confidence 678999999999999877653 3456666654221000000000001111111 1 113456888
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++|+|+++++++...... -.++++.+.+|-
T Consensus 224 pedvA~~v~fL~S~~s~~--itG~~i~VDGG~ 253 (259)
T d2ae2a_ 224 PKELAAMVAFLCFPAASY--VTGQIIYVDGGL 253 (259)
T ss_dssp HHHHHHHHHHHHSGGGTT--CCSCEEEESTTG
T ss_pred HHHHHHHHHHHhCchhCC--CcCcEEEECCCe
Confidence 999999999999653211 113388888874
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.90 E-value=7.2e-23 Score=170.81 Aligned_cols=228 Identities=14% Similarity=0.178 Sum_probs=158.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHH----Hhc
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVA----LKF 74 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~----~~~ 74 (300)
|++|++|||||+++||+++++.|+++| ++|++.+|+.+..++..+++ ...+.++.+|++|++++++++ +++
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~G---a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYG---AKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999 89999999877666665544 345777899999999876655 457
Q ss_pred CCCCEEEEcccccCcc------ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPR------VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
+++|++|||||..... .+.+.++..+++|+.|++ .+.++ +.+++.+++|++||...+.....
T Consensus 81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~-~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~------- 152 (268)
T d2bgka1 81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF-LVAKHAARVMIPAKKGSIVFTASISSFTAGEG------- 152 (268)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHGGGTCEEEEEECCGGGTCCCTT-------
T ss_pred CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchh-hhhhhhcchHhhcCCCCccccccccccccccc-------
Confidence 8999999999975432 123456788999999986 55444 44556679999999776544322
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
....|+.||.+++.+.+.++. ++..+.|+.+-.+-..... ..-. ........... .....+..
T Consensus 153 --~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~-~~~~-~~~~~~~~~~~------~~~gr~~~ 222 (268)
T d2bgka1 153 --VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVF-GVDS-SRVEELAHQAA------NLKGTLLR 222 (268)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSS-SCCH-HHHHHHHHHTC------SSCSCCCC
T ss_pred --cccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhh-cCCH-HHHHHHHHhcc------ccCCCCcC
Confidence 134799999999999887654 3456777777654321111 1111 11221111111 12235778
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
++|+|+++++|+..... --.++++.+.+|-..
T Consensus 223 pedvA~~v~fL~S~~s~--~itGq~i~VDGG~t~ 254 (268)
T d2bgka1 223 AEDVADAVAYLAGDESK--YVSGLNLVIDGGYTR 254 (268)
T ss_dssp HHHHHHHHHHHHSGGGT--TCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHHhChhhC--CccCceEEECcCccc
Confidence 99999999999965321 112338999888644
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.90 E-value=9.5e-24 Score=175.16 Aligned_cols=223 Identities=15% Similarity=0.104 Sum_probs=154.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhh---hcCCCceeEEEeecCCchhHHHHH----H
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLL---DALPHSFVFFDVDLKSGSGFDAVA----L 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~----~ 72 (300)
|++|++|||||+++||++++++|+++| ++|++.+|+.+. .+.+. ...+..+..+++|++|++++++++ +
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G---~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEK---AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999 899999998542 33332 334567778999999999866655 4
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhccCC-eEEEeeccccccCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENKEN-LLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~-~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
+++++|++|||||..... .+.++++..+++|+.+++ .+.++ +.+++.+ +||++||.....+.+.
T Consensus 82 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~-~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~------ 154 (261)
T d1geea_ 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAF-LGSREAIKYFVENDIKGTVINMSSVHEKIPWPL------ 154 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTT------
T ss_pred HhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccch-hHHHHHhhhhccccccccccccccchhcccCcc------
Confidence 578999999999987543 234467788999999986 55444 4445544 5889999877655443
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCc-hHHHHHHHHhcCCceeeccCcccCc
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSL-PIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|+.||.+++.+.+.++. ++..+.|+.|.-+.... .. ..... +.+... .++..+
T Consensus 155 ----~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~----~~~~~~~~-~~~~~~-------~pl~R~ 218 (261)
T d1geea_ 155 ----FVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAE----KFADPEQR-ADVESM-------IPMGYI 218 (261)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHH----HHHSHHHH-HHHHTT-------CTTSSC
T ss_pred ----ccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhh----hcCCHHHH-HHHHhc-------CCCCCC
Confidence 67899999999999887654 34567777664321100 00 00111 111111 134567
Q ss_pred eeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
..++|+|+++++++...... ..++++.+.+|..+
T Consensus 219 ~~pediA~~v~fL~S~~s~~--itG~~i~vDGG~sl 252 (261)
T d1geea_ 219 GEPEEIAAVAAWLASSEASY--VTGITLFADGGMTL 252 (261)
T ss_dssp BCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGG
T ss_pred CCHHHHHHHHHHHhCchhcC--CcCCeEEECCCeeC
Confidence 88999999999999653311 12338999888654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.90 E-value=1.7e-23 Score=173.72 Aligned_cols=224 Identities=15% Similarity=0.102 Sum_probs=154.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHH----Hh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVA----LK 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~----~~ 73 (300)
+++|++|||||+++||+++++.|+++| ++|++.+|+++..+...+. .+..+..+.+|++|++++++++ ++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEG---TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999 8999999987665554433 3556778999999998866555 45
Q ss_pred cCCCCEEEEcccccCc-c----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVP-R----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|++||+||.... . .+.+.++..+++|+.+++ .+.++ +.+++.+++|++||...+.+.+.
T Consensus 80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~-~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~------- 151 (260)
T d1zema1 80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAF-HVLKAVSRQMITQNYGRIVNTASMAGVKGPPN------- 151 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCHHHHSCCTT-------
T ss_pred hCCCCeehhhhccccccCccccccHHHHHhhccccccccc-cchhhHHhhhhhhcCCCCCeeechhhccCCcc-------
Confidence 7899999999997532 1 234456788999999996 55444 44456679999999887665544
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCC-----------CCCCCCCchHHHHHHHHhcCCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQT-----------ISPVPKSLPIQWIDSVLSKGEKVE 206 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 206 (300)
...|+.||.+++.+.+.++.+ +..+.|+.|--+.. ........+..+..... ..
T Consensus 152 ---~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 223 (260)
T d1zema1 152 ---MAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMI-GS---- 223 (260)
T ss_dssp ---BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHH-HT----
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHH-hc----
Confidence 678999999999999877653 35566666543210 00000001111111111 11
Q ss_pred eccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCC
Q 022280 207 FFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGP 248 (300)
Q Consensus 207 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~ 248 (300)
-++..+..++|+|.++++|+..... -..++++.+.+|
T Consensus 224 ---~Pl~R~g~pedvA~~v~fL~S~~s~--~itG~~i~VDGG 260 (260)
T d1zema1 224 ---VPMRRYGDINEIPGVVAFLLGDDSS--FMTGVNLPIAGG 260 (260)
T ss_dssp ---STTSSCBCGGGSHHHHHHHHSGGGT--TCCSCEEEESCC
T ss_pred ---CCCCCCcCHHHHHHHHHHHhCchhc--CccCCeEEeCCC
Confidence 1345678899999999999975321 111337777664
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.4e-24 Score=176.65 Aligned_cols=225 Identities=16% Similarity=0.131 Sum_probs=156.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
+.+|++|||||++.||+++++.|+++| ++|++.+|+.+..+.+.++++ ...++.+|++|++++++++ +++++
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSG---ARVVICDKDESGGRALEQELP-GAVFILCDVTQEDDVKTLVSETIRRFGR 79 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCT-TEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhcC-CCeEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999999 899999999777777776654 4667899999999876655 45689
Q ss_pred CCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 77 ~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+|++|||||..... .+.+.++..+++|+.+++ .+.+++.. .+-+++|++||.....+.+. .
T Consensus 80 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~-~~~~~~~p~m~~~~G~Ii~isS~~~~~~~~~----------~ 148 (250)
T d1ydea1 80 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTY-TLTKLALPYLRKSQGNVINISSLVGAIGQAQ----------A 148 (250)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEECCHHHHHCCTT----------C
T ss_pred CCEEEecccccccccccccccHHHHHHHHHHhhhhHH-HHHHHhhHHHHhCCCCCcccccccccccccC----------c
Confidence 99999999965322 233457788999999996 65554442 23369999999887655443 6
Q ss_pred ChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCC-CCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 149 NVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTIS-PVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
..|+.+|.+++.+.+.++. ++..+.|+.|--+.... .....-....+.+.. . ..++..+..++|
T Consensus 149 ~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~-~-------~~pl~R~g~p~e 220 (250)
T d1ydea1 149 VPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGM-L-------AQPLGRMGQPAE 220 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHH-H-------TSTTSSCBCHHH
T ss_pred chhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHH-h-------cCCCCCCCCHHH
Confidence 7999999999999887654 34557776663211000 000000111111111 0 113457889999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
+|+++++++.. .. -..++++.+.+|..+
T Consensus 221 va~~v~fL~Sd-a~--~itG~~i~vDGG~~l 248 (250)
T d1ydea1 221 VGAAAVFLASE-AN--FCTGIELLVTGGAEL 248 (250)
T ss_dssp HHHHHHHHHHH-CT--TCCSCEEEESTTTTS
T ss_pred HHHHHHHHhCc-cC--CCcCCeEEECCCccc
Confidence 99999998853 21 122448899887543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.90 E-value=2.3e-23 Score=172.60 Aligned_cols=223 Identities=17% Similarity=0.182 Sum_probs=156.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHH----Hh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVA----LK 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~----~~ 73 (300)
|++|++|||||++.||++++++|+++| ++|++++|++++.++..++ .+..+.++.+|+++.+++++++ +.
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G---~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLG---ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999 9999999997665554433 3566777899999999876655 34
Q ss_pred c-CCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 F-GQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~-~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
+ +.+|+++|+||..... .+.+.++..+++|+.+++ .+.++ +.+.+.+++|++||.....+.+.
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~-~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~~------- 152 (258)
T d1ae1a_ 81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAY-HLSQIAYPLLKASQNGNVIFLSSIAGFSALPS------- 152 (258)
T ss_dssp TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTSEEEEEECCGGGTSCCTT-------
T ss_pred hCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccc-cccccccccccccccccccccccccccccccc-------
Confidence 5 4699999999986542 234467788999999996 55544 44566779999999888666544
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCC-CCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVP-KSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.+|.+++.+.+.++. ++..+.|+.+.-+....... ............. ..++..+.
T Consensus 153 ---~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~--------~~plgR~~ 221 (258)
T d1ae1a_ 153 ---VSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIV--------KTPMGRAG 221 (258)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHH--------HSTTCSCB
T ss_pred ---chhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHh--------cCCCCCCc
Confidence 67899999999999887654 44668888876543211000 0001112222211 11345688
Q ss_pred eHHHHHHHHHHHHhccc--cccccccceeeecCCC
Q 022280 217 YVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPD 249 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~ 249 (300)
.++|+|.++.+++.... ..|+ .+.+.+|-
T Consensus 222 ~pediA~~v~fL~S~~s~~itG~----~i~vDGG~ 252 (258)
T d1ae1a_ 222 KPQEVSALIAFLCFPAASYITGQ----IIWADGGF 252 (258)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSC----EEEESTTG
T ss_pred CHHHHHHHHHHHhChhhCCCcCc----EEEeCCCe
Confidence 99999999999996432 2333 78887764
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=7.8e-24 Score=175.29 Aligned_cols=219 Identities=15% Similarity=0.178 Sum_probs=154.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHH----H
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVA----L 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~----~ 72 (300)
++|++|||||+++||+++++.|+++| ++|++++|+.++..+...++ +.++.++.+|++|++++++++ +
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G---a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG---AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD 78 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999 99999999976655444332 345777899999999866655 4
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHH----Hhhhhcc---CCeEEEeeccccccCCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWL----SSFTENK---ENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~----~~~~~~~---~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
+++++|++||+||.... ..+++.+++|+.+++ .+. ..+.+.+ .++||++||...+.+.+.
T Consensus 79 ~~G~iDilVnnAg~~~~----~~~~~~~~~n~~~~~-~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~-------- 145 (254)
T d2gdza1 79 HFGRLDILVNNAGVNNE----KNWEKTLQINLVSVI-SGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQ-------- 145 (254)
T ss_dssp HHSCCCEEEECCCCCCS----SSHHHHHHHHTHHHH-HHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTT--------
T ss_pred HcCCcCeeccccccccc----ccchheeeeehhhHH-HHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCCC--------
Confidence 57899999999998643 368889999999885 443 3343433 247999999887655444
Q ss_pred CCCChhHHHHHHHHHHHHH--H----cC---CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh---cCCce---eecc-
Q 022280 146 APVNVYGKSKVAAEKFIYE--K----CS---NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLS---KGEKV---EFFH- 209 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~--~----~~---~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~- 209 (300)
...|+.||.+++.+.++ + ++ ++..+.|+.|--+ +...... ..... ....
T Consensus 146 --~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~-------------~~~~~~~~~~~~~~~~~~~~~~~ 210 (254)
T d2gdza1 146 --QPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTA-------------ILESIEKEENMGQYIEYKDHIKD 210 (254)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSH-------------HHHGGGCHHHHGGGGGGHHHHHH
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCCh-------------hhhhccccccccccHHHHHHHHh
Confidence 67899999999988764 2 22 3455666665321 1110000 00000 0000
Q ss_pred -CcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccCHHH
Q 022280 210 -DECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255 (300)
Q Consensus 210 -~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s~~e 255 (300)
-++..+..++|+|++++++++.....|+ ++.+.+|..+.++|
T Consensus 211 ~~p~~r~~~pedvA~~v~fL~s~~~itG~----~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 211 MIKYYGILDPPLIANGLITLIEDDALNGA----IMKITTSKGIHFQD 253 (254)
T ss_dssp HHHHHCCBCHHHHHHHHHHHHHCTTCSSC----EEEEETTTEEEECC
T ss_pred cCCCCCCcCHHHHHHHHHHHHcCCCCCCC----EEEECCCCeeeccc
Confidence 0234578899999999999987655555 89999988776544
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.89 E-value=1.6e-23 Score=173.77 Aligned_cols=223 Identities=15% Similarity=0.101 Sum_probs=154.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHH----HhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVA----LKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~----~~~~ 75 (300)
+|.+|||||+++||+++++.|+++| ++|++.+|+++..++..++ .+..+.++++|++|+++++.++ ++++
T Consensus 2 gKValITGas~GIG~aia~~la~~G---a~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEG---LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999 9999999987666554433 3567788999999999866655 4578
Q ss_pred CCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhhhh------ccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSFTE------NKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 76 ~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~~~------~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++|++|||||..... .+.+.++..+++|+.+++ .+.+++.. .+.+++|++||...+.+.+.
T Consensus 79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~-~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~-------- 149 (257)
T d2rhca1 79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVF-RVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVH-------- 149 (257)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTT--------
T ss_pred CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhh-HHHHHHhHHHHHHhcCCccccccccccccccccc--------
Confidence 999999999986543 234467789999999996 77766542 44568999999887766544
Q ss_pred CCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCC------CCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 146 APVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTIS------PVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.||.+++.+.+.++.+ +..+.||.|--+.... ............... . ..++
T Consensus 150 --~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~-~-------~~Pl 219 (257)
T d2rhca1 150 --AAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRIT-A-------RVPI 219 (257)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHH-T-------TSTT
T ss_pred --chhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHH-h-------cCCC
Confidence 678999999999999887653 3345555442110000 000000001111111 0 0134
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
..+..++|+|+++++|+...... -.++++.+.+|-
T Consensus 220 gR~~~pedia~~v~fL~S~~s~~--itG~~i~vDGG~ 254 (257)
T d2rhca1 220 GRYVQPSEVAEMVAYLIGPGAAA--VTAQALNVCGGL 254 (257)
T ss_dssp SSCBCHHHHHHHHHHHTSGGGTT--CCSCEEEESTTC
T ss_pred CCCcCHHHHHHHHHHHhCchhcC--CcCceEEECcCc
Confidence 57889999999999999643211 123388888763
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.89 E-value=4.8e-23 Score=170.58 Aligned_cols=223 Identities=18% Similarity=0.122 Sum_probs=153.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHH----HhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVA----LKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~----~~~~ 75 (300)
+|.+|||||+++||++++++|+++| ++|++.+|++++.+.+.++ .+.++..+++|++|+++++.++ ++++
T Consensus 1 KKValITGas~GIG~aia~~la~~G---a~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDG---FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLG 77 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 3567999999999999999999999 8999999987766555433 3566778999999999866655 4578
Q ss_pred CCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhh----hhcc-CCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSF----TENK-ENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~----~~~~-~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
++|++|||||...... +.+.++..+++|+.|++ .+.+++ .+.+ .+++|++||...+.+.+.
T Consensus 78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~-~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~--------- 147 (255)
T d1gega_ 78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVI-WGIQAAVEAFKKEGHGGKIINACSQAGHVGNPE--------- 147 (255)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTT---------
T ss_pred CccEEEecccccccCcHHHhhhhhhhhhhhhcccchh-hhhhhhcchhhhhccccccccccchhhcccCcc---------
Confidence 9999999999865432 34456788999999996 665553 3333 457999999887655544
Q ss_pred CCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHh-cCCcee-----ec-cCcc
Q 022280 147 PVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLS-KGEKVE-----FF-HDEC 212 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~-~~~~ 212 (300)
...|+.||.+++.+.+.++.+ +..+.||.+--+. ...+...... .+.... +. ..++
T Consensus 148 -~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 217 (255)
T d1gega_ 148 -LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM---------WAEIDRQVSEAAGKPLGYGTAEFAKRITL 217 (255)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH---------HHHHHHHHHHHHTCCTTHHHHHHHTTCTT
T ss_pred -cccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChH---------HhhhhhhhHhhhcccchhHHHHHHhcCCC
Confidence 678999999999999877653 3445565553211 0011111000 011000 00 1135
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
.++..++|+|+++++++...... ..++++.+.+|-.
T Consensus 218 ~R~~~peevA~~v~fL~S~~a~~--itG~~i~vDGG~~ 253 (255)
T d1gega_ 218 GRLSEPEDVAACVSYLASPDSDY--MTGQSLLIDGGMV 253 (255)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESSSSS
T ss_pred CCCcCHHHHHHHHHHHhCchhCC--ccCcEEEecCCEE
Confidence 67889999999999999653211 1233889988753
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.89 E-value=2.2e-23 Score=174.37 Aligned_cols=229 Identities=13% Similarity=0.093 Sum_probs=154.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC------CCceeEEEeecCCchhHHHHH---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL------PHSFVFFDVDLKSGSGFDAVA--- 71 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~--- 71 (300)
+++|++|||||+++||++++++|+++| ++|++.+|+.++.++..+++ ...+..+.+|++|++++++++
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEG---AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHH
Confidence 578999999999999999999999999 89999999876655544332 235678999999999866555
Q ss_pred -HhcCCCCEEEEcccccCccc------cccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCC
Q 022280 72 -LKFGQPDVVVNCAALSVPRV------CENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 72 -~~~~~~d~vih~a~~~~~~~------~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
++++++|++|||||...... +.+.++..+++|+.+++ .+.+++ ++.+.++++++||.....+...
T Consensus 79 ~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~-~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~~--- 154 (274)
T d1xhla_ 79 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI-EMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSG--- 154 (274)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEECCGGGSSSCCTT---
T ss_pred HHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccc-cccccccccccccccccccchhhhhccccCCC---
Confidence 45789999999999653221 22356788999999996 555544 3455568888888765544433
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+++.+.+.++. ++..+.||.|--+.............-..+.+..... .-++.
T Consensus 155 -------~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~----~iPlg 223 (274)
T d1xhla_ 155 -------YPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKE----CIPVG 223 (274)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT----TCTTS
T ss_pred -------CceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHc----CCCCC
Confidence 56899999999999887654 4456777776433110000000000111111111110 01345
Q ss_pred CceeHHHHHHHHHHHHhcc---ccccccccceeeecCCCcc
Q 022280 214 CPVYVRDVVKIILALTNRW---LSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~---~~~~~~~~~i~ni~~~~~~ 251 (300)
.+..++|+|+++++++..+ -..|+ ++.+.+|..+
T Consensus 224 R~g~pediA~~v~fL~S~d~s~~itG~----~i~vDGG~~l 260 (274)
T d1xhla_ 224 HCGKPEEIANIIVFLADRNLSSYIIGQ----SIVADGGSTL 260 (274)
T ss_dssp SCBCHHHHHHHHHHHHCHHHHTTCCSC----EEEESTTGGG
T ss_pred CCcCHHHHHHHHHHHcCCccccCccCc----EEEeCcCHHH
Confidence 6788999999999999642 13444 8999888643
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.89 E-value=4e-23 Score=172.97 Aligned_cols=223 Identities=17% Similarity=0.106 Sum_probs=153.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
|++|++|||||+++||+++++.|+++| ++|++.+|+++++.++..+++..+..+.+|+++.+++++++ +++++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 79 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEG---AKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGK 79 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCC
Confidence 357999999999999999999999999 99999999987777777666777888999999998765554 55789
Q ss_pred CCEEEEcccccCccc-----cc----cChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPRV-----CE----NDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYKEED 143 (300)
Q Consensus 77 ~d~vih~a~~~~~~~-----~~----~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~E~~ 143 (300)
+|++||+||...... .. +.++..+++|+.+++ .+.+++ ++.+ +++|++||...+.+.+.
T Consensus 80 idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~-~~~~~~~p~m~~~~-g~iI~i~S~~~~~~~~~------ 151 (276)
T d1bdba_ 80 IDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYI-HAVKACLPALVASR-GNVIFTISNAGFYPNGG------ 151 (276)
T ss_dssp CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHT-CEEEEECCGGGTSTTSS------
T ss_pred cccccccccccCCCCccccccccchhhhhhHHHHHhhHHHH-HHHHHHHHHHHhcC-CCceeeeechhccCCCC------
Confidence 999999999754321 11 136788999999996 555544 4444 58999988766544433
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC------CceeEeeeeeeCCCCCCC----CCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 144 EIAPVNVYGKSKVAAEKFIYEKCS------NFAILRSSIIYGPQTISP----VPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 144 ~~~p~~~Y~~sK~~~e~~~~~~~~------~~~ilR~~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+++.+.+.++. ++..+.|+.|--+-.... ........-..+.+... -+..
T Consensus 152 ----~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Plg 220 (276)
T d1bdba_ 152 ----GPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSV-------LPIG 220 (276)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTT-------CTTS
T ss_pred ----CchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhc-------CCCC
Confidence 56899999999998887654 334566666643211000 00000000011111111 1345
Q ss_pred CceeHHHHHHHHHHHHhcc---ccccccccceeeecCCC
Q 022280 214 CPVYVRDVVKIILALTNRW---LSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~---~~~~~~~~~i~ni~~~~ 249 (300)
.+..++|+|.++++++..+ -..|+ ++++.+|-
T Consensus 221 R~g~peeva~~v~fL~S~~~a~~itG~----~i~VDGG~ 255 (276)
T d1bdba_ 221 RMPEVEEYTGAYVFFATRGDAAPATGA----LLNYDGGL 255 (276)
T ss_dssp SCCCGGGGSHHHHHHHCHHHHTTCSSC----EEEESSSG
T ss_pred CCcCHHHHHHHHHHHcCCcccCCeeCc----EEEECcCh
Confidence 6788999999999988542 23344 89998874
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.89 E-value=2.6e-23 Score=173.12 Aligned_cols=224 Identities=14% Similarity=0.177 Sum_probs=148.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC------CCceeEEEeecCCchhHHHHH---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL------PHSFVFFDVDLKSGSGFDAVA--- 71 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~--- 71 (300)
+++|++|||||+++||++++++|+++| ++|++.+|+.++.+++.+++ +.++.++.+|++|++++++++
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~G---a~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~ 79 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREG---AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT 79 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 89999999977665554432 235778999999999866655
Q ss_pred -HhcCCCCEEEEcccccCcc--------ccccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeecc-ccccCCCCC
Q 022280 72 -LKFGQPDVVVNCAALSVPR--------VCENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTD-QVYEGVKSF 138 (300)
Q Consensus 72 -~~~~~~d~vih~a~~~~~~--------~~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~-~~~~~~~~~ 138 (300)
++++++|++|||||..... .+.+.++..+++|+.+++ .+.+++.. .+.+++|+++|. ....+.+.
T Consensus 80 ~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~-~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~~~- 157 (264)
T d1spxa_ 80 LGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVI-ALTKKAVPHLSSTKGEIVNISSIASGLHATPD- 157 (264)
T ss_dssp HHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEECCTTSSSSCCTT-
T ss_pred HHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHH-HHHhhhCCccccccCcceeeeeeccccccCCC-
Confidence 4578999999999975321 123456788999999996 66555443 223466666654 33434333
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCC-CCCCc---hHHHHHHHHhcCCceee
Q 022280 139 YKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISP-VPKSL---PIQWIDSVLSKGEKVEF 207 (300)
Q Consensus 139 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~ 207 (300)
...|+.||.+++.+.+.++. ++..+.||.|--+..... .+... ......... .
T Consensus 158 ---------~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-~------ 221 (264)
T d1spxa_ 158 ---------FPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMK-E------ 221 (264)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHH-H------
T ss_pred ---------chhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHH-h------
Confidence 56799999999998887654 456677777753321100 00000 000010000 0
Q ss_pred ccCcccCceeHHHHHHHHHHHHhccc---cccccccceeeecCCCc
Q 022280 208 FHDECRCPVYVRDVVKIILALTNRWL---SEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 208 ~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~i~ni~~~~~ 250 (300)
.-++..+..++|+|+++.+++..+. ..|+ ++.+.+|..
T Consensus 222 -~~Pl~R~g~pedvA~~v~fL~S~~~s~~itG~----~i~vDGG~s 262 (264)
T d1spxa_ 222 -CVPAGVMGQPQDIAEVIAFLADRKTSSYIIGH----QLVVDGGSS 262 (264)
T ss_dssp -HCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSC----EEEESTTGG
T ss_pred -cCCCCCCcCHHHHHHHHHHHhCCcccCCccCc----eEEeCCChh
Confidence 0134568889999999999996432 3444 899988754
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.89 E-value=6.9e-23 Score=168.10 Aligned_cols=219 Identities=16% Similarity=0.146 Sum_probs=158.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----hcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----KFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~~~ 76 (300)
+.+|++|||||++.||+++++.|+++| ++|++.+|+.+...+..++++..+.++++|++++++++++++ ++++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~ 79 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREG---ASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGR 79 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999 999999999888888888888888889999999998766554 4689
Q ss_pred CCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhhc--cCCeEEEeeccccccCCCCCCCCCCCCCCCCh
Q 022280 77 PDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTEN--KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNV 150 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~ 150 (300)
+|++||+|+...... +.+.+++.+++|+.+.+ .+.+++... +.+.++.+||.+.... +. ...
T Consensus 80 iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~k~~~~~~~~~~~i~~~ss~a~~~~-~~----------~~~ 147 (241)
T d2a4ka1 80 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSF-LVARKAGEVLEEGGSLVLTGSVAGLGA-FG----------LAH 147 (241)
T ss_dssp CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHH-HHHHHHHHHCCTTCEEEEECCCTTCCH-HH----------HHH
T ss_pred ccEeccccccccccchhhhhcccccccccccccccc-ccccccccccccccceeeccccccccc-cC----------ccc
Confidence 999999999765432 33456788999999986 777766552 2335555555443322 22 568
Q ss_pred hHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHH
Q 022280 151 YGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223 (300)
Q Consensus 151 Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 223 (300)
|+.+|.+++.+.+.++. ++..+.||.+-.+.. ...+........ .. .....+..++|+|+
T Consensus 148 Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~-----~~~~~~~~~~~~-~~-------~p~~r~~~p~dva~ 214 (241)
T d2a4ka1 148 YAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMT-----AGLPPWAWEQEV-GA-------SPLGRAGRPEEVAQ 214 (241)
T ss_dssp HHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGG-----TTSCHHHHHHHH-HT-------STTCSCBCHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHH-----HhhhHhHHHHHH-hC-------CCCCCCcCHHHHHH
Confidence 99999999999987754 345677777643211 112223333322 11 12346788999999
Q ss_pred HHHHHHhccc--cccccccceeeecCCCcc
Q 022280 224 IILALTNRWL--SEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 224 ~~~~~~~~~~--~~~~~~~~i~ni~~~~~~ 251 (300)
++.+++.... ..|+ ++.+.+|.++
T Consensus 215 ~v~fL~S~~s~~itG~----~i~vDGG~s~ 240 (241)
T d2a4ka1 215 AALFLLSEESAYITGQ----ALYVDGGRSI 240 (241)
T ss_dssp HHHHHHSGGGTTCCSC----EEEESTTTTT
T ss_pred HHHHHhcchhCCCcCc----eEEeCCCccc
Confidence 9999996532 2333 8888887643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.89 E-value=6.5e-23 Score=171.42 Aligned_cols=230 Identities=14% Similarity=0.154 Sum_probs=151.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC------CCceeEEEeecCCchhHHHHH---
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL------PHSFVFFDVDLKSGSGFDAVA--- 71 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~--- 71 (300)
+++|++|||||+++||+++++.|+++| ++|++.+|+.++.++..+.+ ...+..+.+|++|+++++.++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G---a~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEG---ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence 568999999999999999999999999 99999999976665544332 235678999999999866655
Q ss_pred -HhcCCCCEEEEcccccCcccc--------ccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeec-cccccCCCCC
Q 022280 72 -LKFGQPDVVVNCAALSVPRVC--------ENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLST-DQVYEGVKSF 138 (300)
Q Consensus 72 -~~~~~~d~vih~a~~~~~~~~--------~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS-~~~~~~~~~~ 138 (300)
++++++|++|||||....... .+.++..+++|+.+++ .+.+++.. .+.+++|+++| .+...+.+.
T Consensus 80 ~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~-~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~~~- 157 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVI-EMTKKVKPHLVASKGEIVNVSSIVAGPQAQPD- 157 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEECCGGGSSSCCCS-
T ss_pred HHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHH-HHHHhhcccccccCCccccccchhccccCCCC-
Confidence 457899999999998654211 1136678899999986 66655443 23345555555 454444433
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCc
Q 022280 139 YKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE 211 (300)
Q Consensus 139 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
...|+.||.+++.+.+.++. ++..+.||.|--+................+....... .-+
T Consensus 158 ---------~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~----~~P 224 (272)
T d1xkqa_ 158 ---------FLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKE----CIP 224 (272)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT----TCT
T ss_pred ---------cchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhc----CCC
Confidence 56899999999998887654 4456777766432110000000000001111111110 013
Q ss_pred ccCceeHHHHHHHHHHHHhccc---cccccccceeeecCCCccC
Q 022280 212 CRCPVYVRDVVKIILALTNRWL---SEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~i~ni~~~~~~s 252 (300)
+..+..++|+|+++++++.... ..|+ ++.+.+|..+.
T Consensus 225 lgR~g~pediA~~v~fL~S~~as~~iTG~----~i~vDGG~~l~ 264 (272)
T d1xkqa_ 225 IGAAGKPEHIANIILFLADRNLSFYILGQ----SIVADGGTSLV 264 (272)
T ss_dssp TSSCBCHHHHHHHHHHHHCHHHHTTCCSC----EEEESTTGGGC
T ss_pred CCCCcCHHHHHHHHHHHhCcchhCCccCe----EEEeCcCHHHh
Confidence 4568889999999999996432 2344 89999886543
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.89 E-value=3.7e-23 Score=169.97 Aligned_cols=218 Identities=15% Similarity=0.134 Sum_probs=150.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC-CCchhhhhh---cCCCceeEEEeecCCchhHHHHH----HhcC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVA----LKFG 75 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~-~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~----~~~~ 75 (300)
+.||||||++.||++++++|+++| ++|++.+++ ++..+.+.+ ..+.++.++++|++|++++++++ ++++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~G---a~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 78 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAG---CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999 899887554 333443332 33567788999999999876655 4568
Q ss_pred CCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHH----hhhhccCCeEEEeeccccccCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLS----SFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP 147 (300)
Q Consensus 76 ~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p 147 (300)
++|++|||||..... .+.+.++..+++|+.+++ .+.+ .+++++.++||++||...+.+...
T Consensus 79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~-~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~---------- 147 (244)
T d1edoa_ 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVF-LCTQAATKIMMKKRKGRIINIASVVGLIGNIG---------- 147 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT----------
T ss_pred CCCccccccccccccchhccchHHHHHHHhhhhhhHH-HHHHHHHHHHHHcCCcEEEEEcChhhcCCCCC----------
Confidence 999999999987543 234567789999999996 5544 445566779999999887655444
Q ss_pred CChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 148 VNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 148 ~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
...|+.||.+++.+.+.++. ++..+.||.+--+-. ......+..... .. .++..+..++|
T Consensus 148 ~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~-----~~~~~~~~~~~~-~~-------~pl~R~~~p~d 214 (244)
T d1edoa_ 148 QANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMT-----AKLGEDMEKKIL-GT-------IPLGRTGQPEN 214 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHH-----HTTCHHHHHHHH-TS-------CTTCSCBCHHH
T ss_pred CHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHH-----HHhhHHHHHHHH-hc-------CCCCCCcCHHH
Confidence 67899999999999987765 345566665532210 111112222211 11 13456788999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCC
Q 022280 221 VVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+|+++.+++..+... --.++++.+.+|-
T Consensus 215 vA~~v~fLa~S~~a~-~itG~~i~vdGG~ 242 (244)
T d1edoa_ 215 VAGLVEFLALSPAAS-YITGQAFTIDGGI 242 (244)
T ss_dssp HHHHHHHHHHCSGGG-GCCSCEEEESTTT
T ss_pred HHHHHHHHHCCchhc-CCcCCeEEeCCCe
Confidence 999999986443211 1113388888874
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.88 E-value=5.1e-22 Score=172.17 Aligned_cols=220 Identities=15% Similarity=0.025 Sum_probs=153.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchh-HHHHHHhcCCCCEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSG-FDAVALKFGQPDVV 80 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~~d~v 80 (300)
.+|+|+|||||||||++|+++|+++| ++|+++.|+++......-....+++.+++|++|..+ +..++. ++|.+
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G---~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~---~~~~~ 75 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG---HHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE---GAHLA 75 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT---TCSEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC---CeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhc---CCceE
Confidence 46899999999999999999999999 899999998765432221223568889999999765 444544 88998
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEK 160 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~ 160 (300)
++..... ...++..+. ++++++.+.+++++++.||........ ..+...|..+|...+.
T Consensus 76 ~~~~~~~------------~~~~~~~~~-~~~~aa~~agv~~~v~~Ss~~~~~~~~--------~~~~~~~~~~k~~~~~ 134 (350)
T d1xgka_ 76 FINTTSQ------------AGDEIAIGK-DLADAAKRAGTIQHYIYSSMPDHSLYG--------PWPAVPMWAPKFTVEN 134 (350)
T ss_dssp EECCCST------------TSCHHHHHH-HHHHHHHHHSCCSEEEEEECCCGGGTS--------SCCCCTTTHHHHHHHH
T ss_pred Eeecccc------------cchhhhhhh-HHHHHHHHhCCCceEEEeeccccccCC--------cccchhhhhhHHHHHH
Confidence 8875421 112333443 899999999998999999876543322 1345678899999999
Q ss_pred HHHHHcCCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCC-ceeec--cCcccCceeH-HHHHHHHHHHHhccc--c
Q 022280 161 FIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE-KVEFF--HDECRCPVYV-RDVVKIILALTNRWL--S 234 (300)
Q Consensus 161 ~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~i~v-~D~a~~~~~~~~~~~--~ 234 (300)
.+++...+++++|++.+++.......+..... ....+. .+... ++....++++ +|+++++..+++.+. .
T Consensus 135 ~~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~~~ 209 (350)
T d1xgka_ 135 YVRQLGLPSTFVYAGIYNNNFTSLPYPLFQME-----LMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKW 209 (350)
T ss_dssp HHHTSSSCEEEEEECEEGGGCBSSSCSSCBEE-----ECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHhhccCceeeeeceeecccccccccccccc-----ccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChhhc
Confidence 99999999999999998875322111111000 000111 12222 3456677876 799999999987532 1
Q ss_pred ccccccceeeecCCCccCHHHHHH
Q 022280 235 EDKQMQLLLNVGGPDRVSRVQMAE 258 (300)
Q Consensus 235 ~~~~~~~i~ni~~~~~~s~~e~~~ 258 (300)
.|+ .|++++ +.+|+.|+++
T Consensus 210 ~G~----~~~~~g-~~~T~~eia~ 228 (350)
T d1xgka_ 210 NGH----RIALTF-ETLSPVQVCA 228 (350)
T ss_dssp TTC----EEEECS-EEECHHHHHH
T ss_pred CCe----EEEEeC-CcCCHHHHHH
Confidence 233 888877 6799999988
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=8.2e-23 Score=167.04 Aligned_cols=213 Identities=13% Similarity=0.106 Sum_probs=149.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
|++|++|||||++.||+++++.|+++| ++|++.+|+++..++. ...++.+|+++. ++.++++++++|++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~G---a~V~~~~r~~~~l~~~------~~~~~~~Dv~~~--~~~~~~~~g~iD~l 70 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEG---AEVTICARNEELLKRS------GHRYVVCDLRKD--LDLLFEKVKEVDIL 70 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHT------CSEEEECCTTTC--HHHHHHHSCCCSEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHhc------CCcEEEcchHHH--HHHHHHHhCCCcEE
Confidence 678999999999999999999999999 8999999985443322 234578999864 67888999999999
Q ss_pred EEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChhH
Q 022280 81 VNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYG 152 (300)
Q Consensus 81 ih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~ 152 (300)
|||||...... +.+.++..+++|+.+++ .+.++ +++.+.+++|++||.....+... ...|+
T Consensus 71 VnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~~----------~~~Y~ 139 (234)
T d1o5ia_ 71 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMI-KIVRNYLPAMKEKGWGRIVAITSFSVISPIEN----------LYTSN 139 (234)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------BHHHH
T ss_pred EecccccCCcchhhhhhHHHHHHhhhhhhhhh-hhhhcccccccccccccccccccccccccccc----------cccch
Confidence 99999764432 33456788999999985 55444 45566679999999877665544 67899
Q ss_pred HHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHH
Q 022280 153 KSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKII 225 (300)
Q Consensus 153 ~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 225 (300)
.+|.+++.+.+.++. ++..+.|+.+-.+.... ... ....+.+... .++.++..++|+|.++
T Consensus 140 asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~----~~~-~~~~~~~~~~-------~pl~R~~~pediA~~v 207 (234)
T d1o5ia_ 140 SARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE----LLS-EEKKKQVESQ-------IPMRRMAKPEEIASVV 207 (234)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH----HSC-HHHHHHHHTT-------STTSSCBCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhh----hcC-HHHHHHHHhc-------CCCCCCcCHHHHHHHH
Confidence 999999998887655 34556676664332100 000 1111111111 1345688899999999
Q ss_pred HHHHhccccccccccceeeecCCC
Q 022280 226 LALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+++...... -.++++.+.+|-
T Consensus 208 ~fL~S~~s~~--itG~~i~vDGG~ 229 (234)
T d1o5ia_ 208 AFLCSEKASY--LTGQTIVVDGGL 229 (234)
T ss_dssp HHHHSGGGTT--CCSCEEEESTTC
T ss_pred HHHhChhhcC--CcCcEEEECccc
Confidence 9999653221 123388888874
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.88 E-value=1.8e-22 Score=165.39 Aligned_cols=194 Identities=10% Similarity=0.107 Sum_probs=141.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCce-------eeecCCCCCchhhhhhc---CCCceeEEEeecCCchhHHHHH--
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYD-------VAATHHSTPLPQLLLDA---LPHSFVFFDVDLKSGSGFDAVA-- 71 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~-------v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~-- 71 (300)
+.||||||+++||+++++.|+++| ++ |++.+|+.+..+.+..+ .+..+.++.+|++|++++++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G---~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~ 78 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAA---RHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTH 78 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHT---TTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhC---ccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 458999999999999999999999 55 88888887665555433 3556778999999999866544
Q ss_pred --HhcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHH----HhhhhccCCeEEEeeccccccCCCCCCCC
Q 022280 72 --LKFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWL----SSFTENKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 72 --~~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
++++++|++|||||...... +.+.++..+++|+.|++ .+. ..+++++.+++|++||...+.+.+.
T Consensus 79 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~-~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~---- 153 (240)
T d2bd0a1 79 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTF-FLTQALFALMERQHSGHIFFITSVAATKAFRH---- 153 (240)
T ss_dssp HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----
T ss_pred HHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHH-HHHHHHhHHHHhcCCCceEEEechhhcCCCCC----
Confidence 56789999999999875432 34456788999999996 544 4455566679999999887766544
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+++.+.+.++. ++..+.||.+--+-.. . +.......
T Consensus 154 ------~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~-----~-----------------~~~~~~~~ 205 (240)
T d2bd0a1 154 ------SSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWG-----K-----------------VDDEMQAL 205 (240)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTC-----C-----------------CCSTTGGG
T ss_pred ------ChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhh-----h-----------------cCHhhHhc
Confidence 67899999999998887654 3355666665432110 0 00111224
Q ss_pred ceeHHHHHHHHHHHHhccc
Q 022280 215 PVYVRDVVKIILALTNRWL 233 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~ 233 (300)
+..++|+|+++++++..+.
T Consensus 206 ~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 206 MMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp SBCHHHHHHHHHHHHTSCT
T ss_pred CCCHHHHHHHHHHHHcCCc
Confidence 5679999999999998743
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.2e-22 Score=171.54 Aligned_cols=225 Identities=11% Similarity=0.149 Sum_probs=153.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--------CCceeEEEeecCCchhHHHHH-
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--------PHSFVFFDVDLKSGSGFDAVA- 71 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~- 71 (300)
|++|++|||||+++||+++++.|+++| ++|++.+|+.++.....+++ +.++..+.+|++|++++++++
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~G---a~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 86 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELG---SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 86 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence 468999999999999999999999999 89999999876554443321 346778999999999866655
Q ss_pred ---HhcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHhh----hhccCCeEEEeeccccccCCCCCCC
Q 022280 72 ---LKFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSSF----TENKENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 72 ---~~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
+.++++|++|||||..... ...+.++..+++|+.+++ .+.+++ .+.+.+++|++||....+ .+.
T Consensus 87 ~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~-~~~~~~~~~m~~~~~g~Ii~~ss~~~~~-~~~--- 161 (297)
T d1yxma1 87 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF-YMCKAVYSSWMKEHGGSIVNIIVPTKAG-FPL--- 161 (297)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHTHHHHCEEEEEECCCCTTC-CTT---
T ss_pred HHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchh-hHHHHHHHhhcccccccccccccccccc-ccc---
Confidence 4578999999999976543 234456788999999996 555544 445666888887644322 222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCccc
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECR 213 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
...|+.||.+++.+.+.++. ++..+.||.|.-+..... .......+.... ....+..
T Consensus 162 -------~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~-~~~~~~~~~~~~--------~~~~plg 225 (297)
T d1yxma1 162 -------AVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVEN-YGSWGQSFFEGS--------FQKIPAK 225 (297)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTT-SGGGGGGGGTTG--------GGGSTTS
T ss_pred -------cccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhh-ccccCHHHHHHH--------HhcCCCC
Confidence 56899999999999987764 345677777654321100 000000000000 0001345
Q ss_pred CceeHHHHHHHHHHHHhccccccccccceeeecCCCcc
Q 022280 214 CPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 214 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~ 251 (300)
.+..++|+|.++++|+...... ..++++.+.+|..+
T Consensus 226 R~g~pedvA~~v~fL~Sd~s~~--iTG~~i~VDGG~sl 261 (297)
T d1yxma1 226 RIGVPEEVSSVVCFLLSPAASF--ITGQSVDVDGGRSL 261 (297)
T ss_dssp SCBCTHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGG
T ss_pred CCcCHHHHHHHHHHHhCchhcC--cCCcEEEeCcChhh
Confidence 6888999999999999653211 12338999988644
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2e-22 Score=165.76 Aligned_cols=219 Identities=16% Similarity=0.129 Sum_probs=155.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+++|++|||||++.||+++++.|+++| ++|++.+|++++.+++.+. ..+....+|+.+.+.++...+.++++|++
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G---~~Vi~~~r~~~~l~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~id~l 78 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREG---AKVIATDINESKLQELEKY--PGIQTRVLDVTKKKQIDQFANEVERLDVL 78 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHGGGGGS--TTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHhc--cCCceeeeeccccccccccccccccceeE
Confidence 357999999999999999999999999 8999999987666665544 34556788988888888888888899999
Q ss_pred EEcccccCccc----cccChhhhhhcccccchHHHHHhhh----hccCCeEEEeecccc-ccCCCCCCCCCCCCCCCChh
Q 022280 81 VNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFT----ENKENLLIHLSTDQV-YEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 81 ih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~----~~~~~~~v~~SS~~~-~~~~~~~~~E~~~~~p~~~Y 151 (300)
||+||...... +.+.++..+++|+.+++ .+.+++. +.+.+++|++||... ..+.. ....|
T Consensus 79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~-~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~----------~~~~Y 147 (245)
T d2ag5a1 79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMY-LMIKAFLPKMLAQKSGNIINMSSVASSVKGVV----------NRCVY 147 (245)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEECCSBTTTBCCT----------TBHHH
T ss_pred EecccccCCCChhhCCHHHHHHHHHHhhccch-hHHHhhCcccccCCCceeeeeechhhccCCcc----------chhHH
Confidence 99999875532 33456788999999996 6555443 455679999998653 22222 25789
Q ss_pred HHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCc-eee-----ccCcccCceeH
Q 022280 152 GKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK-VEF-----FHDECRCPVYV 218 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~i~v 218 (300)
+.+|.+++.+++.++.+ +..+.||.+-.|. ..+....... ... ...++..+..+
T Consensus 148 ~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~-------------~~~~~~~~~~~~~~~~~~~~~~pl~R~~~p 214 (245)
T d2ag5a1 148 STTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPS-------------LQERIQARGNPEEARNDFLKRQKTGRFATA 214 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHH-------------HHHHHHHSSSHHHHHHHHHHTCTTSSCEEH
T ss_pred HHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechh-------------hHhhhhhhhhhHHHHHHHHhcCCCCCCcCH
Confidence 99999999999887654 3556676665432 1111111100 000 01235578999
Q ss_pred HHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 219 RDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 219 ~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+|+++++.+++..... -..++++.+.+|.+
T Consensus 215 edva~~v~fL~s~~s~--~iTG~~i~VDGG~s 244 (245)
T d2ag5a1 215 EEIAMLCVYLASDESA--YVTGNPVIIDGGWS 244 (245)
T ss_dssp HHHHHHHHHHHSGGGT--TCCSCEEEECTTGG
T ss_pred HHHHHHHHHHhChhhC--CCcCceEEeCCCcC
Confidence 9999999999975431 11133888888754
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=5.5e-22 Score=164.46 Aligned_cols=222 Identities=18% Similarity=0.120 Sum_probs=149.0
Q ss_pred CCCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCCCchhhhhh--cCCCceeEEEeecCCchhHHHHH----H
Q 022280 1 MSKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD--ALPHSFVFFDVDLKSGSGFDAVA----L 72 (300)
Q Consensus 1 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~----~ 72 (300)
|++|++|||||+| +||++++++|+++| ++|++.+|+.+......+ ........+++|++|+++++.++ +
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~G---a~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAG---AEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE 82 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC---CEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHH
Confidence 4689999999998 89999999999999 899998887543322211 11344567899999998876655 4
Q ss_pred hcCCCCEEEEcccccCcc--------ccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR--------VCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~--------~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
+++++|++||+|+..... .....++..+++|+.+.+ .+.+.+.. .+-+++|++||.....+.+.
T Consensus 83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~-~~~~~~~~~~~~~G~Iv~isS~~~~~~~~~----- 156 (256)
T d1ulua_ 83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLV-AVARRAEPLLREGGGIVTLTYYASEKVVPK----- 156 (256)
T ss_dssp HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHTTTEEEEEEEEEEECGGGTSBCTT-----
T ss_pred hcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHH-HHHHHHHHHhccCCEEEEEeehHhcCCCCC-----
Confidence 578999999999975321 122235567899999886 77666553 12358999999887655544
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|+.||.+++.+.+.++. ++..+.|+.+.-+...... .......... +. .++..+
T Consensus 157 -----~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~---~~~~~~~~~~-~~-------~pl~R~ 220 (256)
T d1ulua_ 157 -----YNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP---GFTKMYDRVA-QT-------APLRRN 220 (256)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------CHHHHHHHH-HH-------STTSSC
T ss_pred -----chHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchh---hhHHHHHHHH-hc-------CCCCCC
Confidence 67899999999999887654 3456777776543221100 0011121111 11 134567
Q ss_pred eeHHHHHHHHHHHHhccc--cccccccceeeecCCCcc
Q 022280 216 VYVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~~~ 251 (300)
..++|+|+++.+|+.... ..|+ ++.+.+|..+
T Consensus 221 ~~pedvA~~v~fL~S~~s~~itG~----~i~VDGG~~~ 254 (256)
T d1ulua_ 221 ITQEEVGNLGLFLLSPLASGITGE----VVYVDAGYHI 254 (256)
T ss_dssp CCHHHHHHHHHHHHSGGGTTCCSC----EEEESTTGGG
T ss_pred cCHHHHHHHHHHHhCchhCCccCC----eEEECcCEeC
Confidence 889999999999997533 2333 8889887543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.87 E-value=1e-21 Score=162.97 Aligned_cols=225 Identities=17% Similarity=0.143 Sum_probs=149.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhh---hhcCCCceeEEEeecCCchhHHHHH----H
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLL---LDALPHSFVFFDVDLKSGSGFDAVA----L 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~----~ 72 (300)
|.+|++|||||++.||.++++.|+++| ++|++.+++.+. .+.. ....+..+.++.+|++|.++++.++ +
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G---~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRG---ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999 899887665433 3332 3344667888999999988766555 4
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeec-cccccCCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLST-DQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS-~~~~~~~~~~~~E~~~~ 145 (300)
+++++|++||+||...... +.+.++..+++|+.+.+ .+++.+.. ..-++++.++| .+...+.+.
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~m~~~g~~iii~s~~~~~~~~~~-------- 151 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQF-FVAQQGLKHCRRGGRIILTSSIAAVMTGIPN-------- 151 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHEEEEEEEEEECCGGGTCCSCCS--------
T ss_pred HcCCCcEEEeccccccccccccchHHHHHHHHhhccceee-eehhhhhhhhhcCCcccccccccccccCCCC--------
Confidence 6789999999999865432 33456788999999986 66665554 12236666655 444433333
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCC--------CCCCCCCCchHHHHHHHHhcCCceeeccC
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQ--------TISPVPKSLPIQWIDSVLSKGEKVEFFHD 210 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
...|+.+|.+++.+.+.++. ++..+.||.+--+- ....... .....+.+......
T Consensus 152 --~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------- 221 (259)
T d1ja9a_ 152 --HALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKG-MPQEKIDEGLANMN------- 221 (259)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTT-CCHHHHHHHHHHTS-------
T ss_pred --chhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhccc-CCHHHHHHHHHhCC-------
Confidence 56899999999998887654 34567777764210 0000111 11112222221211
Q ss_pred cccCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 211 ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 211 ~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
+++++..++|+++++.+|+...... -.++++.+.+|.
T Consensus 222 pl~R~g~p~eVa~~v~fL~S~~a~~--itG~~i~vDGG~ 258 (259)
T d1ja9a_ 222 PLKRIGYPADIGRAVSALCQEESEW--INGQVIKLTGGG 258 (259)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTC
T ss_pred CCCCCcCHHHHHHHHHHHhCchhcC--CcCceEEeCCCC
Confidence 3456888999999999999864421 123388888874
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.87 E-value=1.3e-21 Score=162.46 Aligned_cols=227 Identities=13% Similarity=0.084 Sum_probs=153.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh----cCCCceeEEEeecCCchhHHHHH----Hh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD----ALPHSFVFFDVDLKSGSGFDAVA----LK 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~----~~ 73 (300)
++|++|||||+++||+++++.|+++| ++|++++|+.++..+..+ ..+.++.++++|++|++++++++ ++
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAG---ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999999 999999999877655443 33567788999999999876655 45
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhc-cCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTEN-KENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~-~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|++|||||...... +.+.++..+++|+.|++ .+.++ +.+. +.++++..||..........+ ..
T Consensus 85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~-~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~---~~ 160 (260)
T d1h5qa_ 85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVF-NTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL---NG 160 (260)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEET---TE
T ss_pred hCCCcEecccccccccCCHHHhccccccccccccccchh-hhhhhhcccccccccceEEEEeecccccccccccc---cc
Confidence 789999999999765432 33456788999999986 55444 3333 344666666655443321100 00
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
......|+.||.+++.+.+.++. ++..+.||.+--+.. ......+..... .. -++..+..
T Consensus 161 ~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~-----~~~~~~~~~~~~-~~-------~pl~R~g~ 227 (260)
T d1h5qa_ 161 SLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQT-----AHMDKKIRDHQA-SN-------IPLNRFAQ 227 (260)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGG-----GGSCHHHHHHHH-HT-------CTTSSCBC
T ss_pred CccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcch-----hccCHHHHHHHH-hc-------CCCCCCcC
Confidence 11246899999999999887654 345577776643221 111222222222 11 13446788
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
++|+|.++++++...... -.++++.+.+|..
T Consensus 228 pedvA~~v~fL~S~~s~~--itG~~i~VDGG~~ 258 (260)
T d1h5qa_ 228 PEEMTGQAILLLSDHATY--MTGGEYFIDGGQL 258 (260)
T ss_dssp GGGGHHHHHHHHSGGGTT--CCSCEEEECTTGG
T ss_pred HHHHHHHHHHHhcchhCC--CcCceEEECCCee
Confidence 999999999999653211 1233899988753
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.86 E-value=1.4e-21 Score=161.48 Aligned_cols=215 Identities=12% Similarity=0.121 Sum_probs=148.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh---cC-CCceeEEEeecCCc-hhH----HHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD---AL-PHSFVFFDVDLKSG-SGF----DAVA 71 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~---~~-~~~~~~~~~D~~~~-~~~----~~~~ 71 (300)
|++|+||||||+++||.+++++|+++| ++|++..|+.+....+.+ .. ..++.++.+|++++ +++ +.+.
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G---~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRN---LKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTC---CSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999 889888888666544322 22 34677889999843 444 4455
Q ss_pred HhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhh----hc---cCCeEEEeeccccccCCCCCCCCCCC
Q 022280 72 LKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT----EN---KENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 72 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~----~~---~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++++|++|||||... .+.++..+++|+.|++ .+...+. +. +.+++|++||...+.+...
T Consensus 80 ~~~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~-~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~------- 147 (254)
T d1sbya1 80 DQLKTVDILINGAGILD----DHQIERTIAINFTGLV-NTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQ------- 147 (254)
T ss_dssp HHHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHH-HHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTT-------
T ss_pred HHcCCCCEEEeCCCCCC----HHHHHHHHHHHhHHHH-HHHHHHHHHhhhcccCCCceEEEEechhhccCCCC-------
Confidence 56789999999999753 4578999999999996 5555433 32 2358999999888766544
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.||.++..+.+.++. ++..+.||.|..+-........-....+.+.. ..+....
T Consensus 148 ---~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 213 (254)
T d1sbya1 148 ---VPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELL-----------LSHPTQT 213 (254)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHH-----------TTSCCEE
T ss_pred ---CHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhcc-----------ccCCCCC
Confidence 67899999999999887764 45667787776431000000000000011100 1223457
Q ss_pred HHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
++++|++++.+++... .|+ ++.+.+|.
T Consensus 214 ~e~va~~~~~~~~~~~-tG~----vi~vdgG~ 240 (254)
T d1sbya1 214 SEQCGQNFVKAIEANK-NGA----IWKLDLGT 240 (254)
T ss_dssp HHHHHHHHHHHHHHCC-TTC----EEEEETTE
T ss_pred HHHHHHHHHHhhhCCC-CCC----EEEECCCE
Confidence 9999999999887753 444 88888874
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.3e-22 Score=166.47 Aligned_cols=204 Identities=13% Similarity=0.140 Sum_probs=139.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHH----HH
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAV----AL 72 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~----~~ 72 (300)
++|++|||||++.||.++++.|+++| ++|++.+|+.++.+++.+++ +..+.++++|++++++++.+ .+
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G---~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQG---LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999 89999999876666554432 34677889999999986554 45
Q ss_pred hcCCCCEEEEcccccCcc----ccccChhhhhhcccccchHHHHHh----hhhcc--CCeEEEeeccccccCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPR----VCENDPDSAMSINVPSSLVNWLSS----FTENK--ENLLIHLSTDQVYEGVKSFYKEE 142 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~--~~~~v~~SS~~~~~~~~~~~~E~ 142 (300)
+++++|++|||||..... .+.+.++..+++|+.+.+ .+.++ +++.+ -+++|++||...+...+.
T Consensus 86 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~-~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~----- 159 (257)
T d1xg5a_ 86 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALS-ICTREAYQSMKERNVDDGHIININSMSGHRVLPL----- 159 (257)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSC-----
T ss_pred hcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHH-HHHHHHHHHHHHhccCCCceEEEechHhcCCCCC-----
Confidence 678999999999987543 234456788999999986 54444 33433 369999999876533211
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcCC---------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc--Cc
Q 022280 143 DEIAPVNVYGKSKVAAEKFIYEKCSN---------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DE 211 (300)
Q Consensus 143 ~~~~p~~~Y~~sK~~~e~~~~~~~~~---------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 211 (300)
.....|+.+|.+++.+.+.++.+ +..+-|+.+-.+ +..... . ....... ..
T Consensus 160 ---~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~-------------~~~~~~-~-~~~~~~~~~~~ 221 (257)
T d1xg5a_ 160 ---SVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQ-------------FAFKLH-D-KDPEKAAATYE 221 (257)
T ss_dssp ---GGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSS-------------HHHHHT-T-TCHHHHHHHHC
T ss_pred ---cccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCCh-------------hhhhcC-h-hhHHHHHhcCC
Confidence 01456999999999998766532 233444433211 111111 1 1100000 13
Q ss_pred ccCceeHHHHHHHHHHHHhcc
Q 022280 212 CRCPVYVRDVVKIILALTNRW 232 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~~ 232 (300)
...++.++|+|+++++++..+
T Consensus 222 ~~r~~~pedvA~~v~fL~s~~ 242 (257)
T d1xg5a_ 222 QMKCLKPEDVAEAVIYVLSTP 242 (257)
T ss_dssp ---CBCHHHHHHHHHHHHHSC
T ss_pred CCCCcCHHHHHHHHHHHhCCh
Confidence 456788999999999999774
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.86 E-value=6.4e-22 Score=163.47 Aligned_cols=217 Identities=12% Similarity=0.090 Sum_probs=150.8
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHH----HHhcCCCCEE
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAV----ALKFGQPDVV 80 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~----~~~~~~~d~v 80 (300)
++|||||+++||++++++|+++| ++|++.+|+.+..+++... ...+..+|+++.++++++ .++++++|++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~G---a~V~i~~r~~~~~~~~~~~---~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiL 75 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAG---HTVACHDESFKQKDELEAF---AETYPQLKPMSEQEPAELIEAVTSAYGQVDVL 75 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTT---CEEEECCGGGGSHHHHHHH---HHHCTTSEECCCCSHHHHHHHHHHHHSCCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHhh---hCcEEEeccCCHHHHHHHHHHHHHHcCCCCEE
Confidence 78999999999999999999999 8999999987666554332 112356888888875554 4567899999
Q ss_pred EEcccccCc-c----ccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCCCCCCCCCCCChh
Q 022280 81 VNCAALSVP-R----VCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVY 151 (300)
Q Consensus 81 ih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y 151 (300)
|||||.... . .+.++++..+++|+.+++ .+.++ +++++.++||++||...+.+.+. ...|
T Consensus 76 VnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~-~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~~----------~~~Y 144 (252)
T d1zmta1 76 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPF-ALVNAVASQMKKRKSGHIIFITSATPFGPWKE----------LSTY 144 (252)
T ss_dssp EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCCEEEEECCSTTTSCCTT----------CHHH
T ss_pred EECCcCCCCCCChhhCCHHHHHHHHHHHhHHHH-HHHHHHHHhhcccccceeeccccccccccccc----------cccc
Confidence 999996532 1 223456788899999986 55444 55566679999999887766544 6789
Q ss_pred HHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCC---CchHHHHHHHHhcCCceeeccCcccCceeHHHH
Q 022280 152 GKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPK---SLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDV 221 (300)
Q Consensus 152 ~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 221 (300)
+.||.+++.+.+.++. ++..+.|+.+-.+......+. ........... +. .++..+..++|+
T Consensus 145 ~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~-~~-------~pl~R~g~pedv 216 (252)
T d1zmta1 145 TSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVK-KV-------TALQRLGTQKEL 216 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHH-HH-------SSSSSCBCHHHH
T ss_pred ccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHH-hc-------CCCCCCcCHHHH
Confidence 9999999998887653 567788888765432111000 00011111111 11 124467889999
Q ss_pred HHHHHHHHhccc--cccccccceeeecCCCc
Q 022280 222 VKIILALTNRWL--SEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 222 a~~~~~~~~~~~--~~~~~~~~i~ni~~~~~ 250 (300)
|.++++++.... ..|+ ++.+.+|-.
T Consensus 217 A~~v~fL~S~~s~~iTG~----~i~vdGG~~ 243 (252)
T d1zmta1 217 GELVAFLASGSCDYLTGQ----VFWLAGGFP 243 (252)
T ss_dssp HHHHHHHHTTSCGGGTTC----EEEESTTCC
T ss_pred HHHHHHHhCchhcCCcCC----eEEECCCce
Confidence 999999996532 2333 899988753
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.86 E-value=8.4e-22 Score=166.57 Aligned_cols=209 Identities=16% Similarity=0.116 Sum_probs=144.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc---------hhhhhhcCCCceeEEEeecCCchhHHH--
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL---------PQLLLDALPHSFVFFDVDLKSGSGFDA-- 69 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~---------~~~~~~~~~~~~~~~~~D~~~~~~~~~-- 69 (300)
+++|++|||||+++||+++++.|+++| ++|++.+++.+. .+.+.+.+......+.+|++|.++.++
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~G---a~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 81 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERG---ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLV 81 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHH
Confidence 357999999999999999999999999 899998876432 222222222233446789988876544
Q ss_pred --HHHhcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCCCC
Q 022280 70 --VALKFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKSFY 139 (300)
Q Consensus 70 --~~~~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~ 139 (300)
+.++++++|++|||||+..... +.+.++..+++|+.|++ .+.++ +++++.++||++||.....+...
T Consensus 82 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~-~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~~-- 158 (302)
T d1gz6a_ 82 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSF-QVTRAAWDHMKKQNYGRIIMTASASGIYGNFG-- 158 (302)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT--
T ss_pred HHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhH-HHHHHhHHHHHhCCCcEEEEeCChhhcCCCCC--
Confidence 4456889999999999875432 33456788999999996 55444 55567779999999877655444
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcc
Q 022280 140 KEEDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDEC 212 (300)
Q Consensus 140 ~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (300)
...|+.||.+++.+.+.++.+ +..+-|+.+--+. ....+. ..
T Consensus 159 --------~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~-----~~~~~~------------------~~ 207 (302)
T d1gz6a_ 159 --------QANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMT-----ETVMPE------------------DL 207 (302)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTT-----GGGSCH------------------HH
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcch-----hhcCcH------------------hh
Confidence 678999999999999877653 3445555431110 000111 11
Q ss_pred cCceeHHHHHHHHHHHHhccccccccccceeeecCCC
Q 022280 213 RCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPD 249 (300)
Q Consensus 213 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~ 249 (300)
.+++.++|+|.++++|+... . ...++++.+.+|.
T Consensus 208 ~~~~~PedvA~~v~fL~S~~-a--~itG~~i~vdGG~ 241 (302)
T d1gz6a_ 208 VEALKPEYVAPLVLWLCHES-C--EENGGLFEVGAGW 241 (302)
T ss_dssp HHHSCGGGTHHHHHHHTSTT-C--CCCSCEEEEETTE
T ss_pred HhcCCHHHHHHHHHHHcCCC-c--CCCCcEEEeCCCc
Confidence 23456899999999998532 1 1224488887764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.6e-22 Score=163.74 Aligned_cols=194 Identities=15% Similarity=0.120 Sum_probs=142.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh---cCCCceeEEEeecCCchhHHHHH----Hh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVA----LK 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~----~~ 73 (300)
+.+|+++||||+++||++++++|+++| ++|++.+|+.++.+.+.+ ..+.++..+.+|++|+++++.++ ++
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G---~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLK---SKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999 999999999776655543 33567888999999999876655 46
Q ss_pred cCCCCEEEEcccccCccc----cccChhhhhhcccccchHHH----HHhhhhccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNW----LSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
++++|++|||||...... ..+.++..+++|+.|++ .+ +..+.+.+.++||++||...+.+.+.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~-------- 152 (244)
T d1yb1a_ 82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF-WTTKAFLPAMTKNNHGHIVTVASAAGHVSVPF-------- 152 (244)
T ss_dssp TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTTCEEEEEECCCC-CCCHHH--------
T ss_pred cCCCceeEeeccccccccccccchhHHHhhcceeeeccH-HHHHHHhhhHHhcCCceEEEeecchhcCCCCC--------
Confidence 789999999999875432 23345688999999996 54 44455667779999999887766544
Q ss_pred CCCChhHHHHHHHHHHHHHHcCC----------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCc
Q 022280 146 APVNVYGKSKVAAEKFIYEKCSN----------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~~----------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (300)
...|+.||.+++.+.+.++.+ +..+.||.|--+.. .... ......
T Consensus 153 --~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~------------------~~~~-----~~~~~~ 207 (244)
T d1yb1a_ 153 --LLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFI------------------KNPS-----TSLGPT 207 (244)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCST------------------TCTH-----HHHCCC
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhh------------------hCcC-----ccccCC
Confidence 568999999999998877643 33455544421110 0000 011234
Q ss_pred eeHHHHHHHHHHHHhc
Q 022280 216 VYVRDVVKIILALTNR 231 (300)
Q Consensus 216 i~v~D~a~~~~~~~~~ 231 (300)
+.++|+|+.++..+..
T Consensus 208 ~~pe~va~~i~~~~~~ 223 (244)
T d1yb1a_ 208 LEPEEVVNRLMHGILT 223 (244)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 5789999999888766
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.85 E-value=2.1e-20 Score=156.08 Aligned_cols=227 Identities=14% Similarity=0.078 Sum_probs=149.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhh---hcCCCceeEEEeecCCchhHHHHH----H
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLL---DALPHSFVFFDVDLKSGSGFDAVA----L 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~----~ 72 (300)
|++|++|||||++.||+++++.|+++| ++|++.+|+.+. .+.+. ...+..+.++++|++|++++.+.+ +
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~G---a~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRG---CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999999999 899998887443 23222 333566778999999999866655 4
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccc-cCCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVY-EGVKSFYKEEDEI 145 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~-~~~~~~~~E~~~~ 145 (300)
.++++|++||+++...... ..+.++..+++|+.+++ .+.+++.. ..-+++++++|.... ++..
T Consensus 93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~-~~~~~~~~~m~~~g~~i~i~s~~~~~~~~~--------- 162 (272)
T d1g0oa_ 93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQF-FVAREAYKHLEIGGRLILMGSITGQAKAVP--------- 162 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHSCTTCEEEEECCGGGTCSSCS---------
T ss_pred HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceee-eecccccccccccccccccccccccccccc---------
Confidence 5689999999999765432 23345678899999996 76666654 223478888775432 2222
Q ss_pred CCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCC------CCCCCCCc-hHHHHHHHHhcCCceeeccCc
Q 022280 146 APVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQT------ISPVPKSL-PIQWIDSVLSKGEKVEFFHDE 211 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 211 (300)
....|+.+|.+++.+.+.++. ++..+.||.+-.+.. ........ ........... ..+
T Consensus 163 -~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~P 234 (272)
T d1g0oa_ 163 -KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQ-------WSP 234 (272)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHH-------SCT
T ss_pred -chhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHc-------cCC
Confidence 256799999999999886654 456677777642210 00000000 00011000000 113
Q ss_pred ccCceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 212 CRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 212 ~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+..+..++|+|.++.+|+...... -.+.++.+.+|..
T Consensus 235 lgR~~~peevA~~v~fL~s~~s~~--itG~~i~vDGG~~ 271 (272)
T d1g0oa_ 235 LRRVGLPIDIARVVCFLASNDGGW--VTGKVIGIDGGAC 271 (272)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTCC
T ss_pred CCCCcCHHHHHHHHHHHhCchhcC--ccCceEeECCCCC
Confidence 456889999999999999754311 1233888888753
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=4.2e-20 Score=152.29 Aligned_cols=211 Identities=17% Similarity=0.203 Sum_probs=147.4
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----HhcCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKFGQ 76 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~~~ 76 (300)
+++|++|||||+++||++++++|+++| ++|++.+|+.+..+...+++.........|+.+.++++... ..+..
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQG---ASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGR 79 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 578999999999999999999999999 99999999998888888777777777889999877655443 33467
Q ss_pred CCEEEEcccccCccc----------cccChhhhhhcccccchHHHHHhhhh----------ccCCeEEEeeccccccCCC
Q 022280 77 PDVVVNCAALSVPRV----------CENDPDSAMSINVPSSLVNWLSSFTE----------NKENLLIHLSTDQVYEGVK 136 (300)
Q Consensus 77 ~d~vih~a~~~~~~~----------~~~~~~~~~~~nv~~~~~~l~~~~~~----------~~~~~~v~~SS~~~~~~~~ 136 (300)
.|.++++++...... ..+.++..+++|+.+++ .+.+++.. .+.++||++||...+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~-~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~ 158 (248)
T d2o23a1 80 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTF-NVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQV 158 (248)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT
T ss_pred ccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHH-HHHHHhHHHHHHhhhhccCCceEEEEecchhhccCCC
Confidence 999999877543211 12345678899999996 77766533 1335899999988776554
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeecc
Q 022280 137 SFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH 209 (300)
Q Consensus 137 ~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
. ...|+.||.+++.+.+.++.+ +..+.||.+.-+.. ...+........ ... ++
T Consensus 159 ~----------~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~-----~~~~~~~~~~~~-~~~--pl-- 218 (248)
T d2o23a1 159 G----------QAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLL-----TSLPEKVCNFLA-SQV--PF-- 218 (248)
T ss_dssp T----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC---------------CHHH-HTC--SS--
T ss_pred C----------chHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchh-----hcCCHHHHHHHH-hcC--CC--
Confidence 4 678999999999999877653 35566666543221 111111111111 111 11
Q ss_pred CcccCceeHHHHHHHHHHHHhccccccc
Q 022280 210 DECRCPVYVRDVVKIILALTNRWLSEDK 237 (300)
Q Consensus 210 ~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 237 (300)
...+..++|+|++++++++..-..|+
T Consensus 219 --~~R~g~peevA~~v~fL~s~~~itGq 244 (248)
T d2o23a1 219 --PSRLGDPAEYAHLVQAIIENPFLNGE 244 (248)
T ss_dssp --SCSCBCHHHHHHHHHHHHHCTTCCSC
T ss_pred --CCCCcCHHHHHHHHHHHHhCCCCCce
Confidence 13578899999999999976433343
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.3e-20 Score=158.27 Aligned_cols=165 Identities=21% Similarity=0.258 Sum_probs=123.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh---hc---CCCceeEEEeecCCchhHHHHHHhc--
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL---DA---LPHSFVFFDVDLKSGSGFDAVALKF-- 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~---~~---~~~~~~~~~~D~~~~~~~~~~~~~~-- 74 (300)
+|.||||||+++||+++++.|+++|.+++.|....|+.+....+. .. .+..+..+.+|++|++++..++++.
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 567899999999999999999999955455666666644333322 22 2457788999999999988888753
Q ss_pred CCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHH----hhhhccCCeEEEeeccccccCCCCCCCCCCCCC
Q 022280 75 GQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLS----SFTENKENLLIHLSTDQVYEGVKSFYKEEDEIA 146 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~ 146 (300)
+.+|+++|+|+...... +.+.++..+++|+.|++ .+.+ .+++++.+++|++||.....+.+.
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~-~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~~--------- 151 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTV-RMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPF--------- 151 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTT---------
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHH-HHHHHHHHHHHHcCCCceEEEechhhcCCCCC---------
Confidence 67999999999875432 33456788999999986 5444 455677789999999887655544
Q ss_pred CCChhHHHHHHHHHHHHHHcC-------CceeEeeeeee
Q 022280 147 PVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIY 178 (300)
Q Consensus 147 p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~ 178 (300)
...|+.||.+++.+.+.++. ++..+.||.|-
T Consensus 152 -~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~ 189 (285)
T d1jtva_ 152 -NDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVH 189 (285)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC
T ss_pred -chHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCC
Confidence 67899999999998887654 34567777664
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=5.5e-21 Score=158.61 Aligned_cols=204 Identities=14% Similarity=0.090 Sum_probs=141.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhh---ccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHH
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSE---IEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~---~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
|.+|.++||||+++||++++++|++ +| ++|++.+|+.+..+.+.+++ +.++.++.+|++++++++++++
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G---~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~ 80 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPG---SVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLS 80 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTT---CEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCC---CEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHH
Confidence 5688999999999999999999975 78 89999999977666554432 3467789999999998877764
Q ss_pred h--------cCCCCEEEEcccccCcc-------ccccChhhhhhcccccchHHHHHhhhh----cc--CCeEEEeecccc
Q 022280 73 K--------FGQPDVVVNCAALSVPR-------VCENDPDSAMSINVPSSLVNWLSSFTE----NK--ENLLIHLSTDQV 131 (300)
Q Consensus 73 ~--------~~~~d~vih~a~~~~~~-------~~~~~~~~~~~~nv~~~~~~l~~~~~~----~~--~~~~v~~SS~~~ 131 (300)
. .+.+|+++|+||..... .+.+.++..+++|+.+++ .+.+++.. .+ .+++|++||...
T Consensus 81 ~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~-~l~~~~~~~m~~~~~~~g~Iv~isS~~~ 159 (259)
T d1oaaa_ 81 AVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSML-CLTSGTLNAFQDSPGLSKTVVNISSLCA 159 (259)
T ss_dssp HHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHH-HHHHHHHHTSCCCTTCEEEEEEECCGGG
T ss_pred HHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhH-HHHHHHHHHHHhcCCCcccccccccccc
Confidence 3 23578999999975321 122346678999999996 66665543 33 258999999887
Q ss_pred ccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCC-----ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCcee
Q 022280 132 YEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN-----FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVE 206 (300)
Q Consensus 132 ~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~-----~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (300)
+.+.+. ...|+.||.+++.+.+.++.+ +..+.||.|-.+ +............
T Consensus 160 ~~~~~~----------~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~-------------~~~~~~~~~~~~~ 216 (259)
T d1oaaa_ 160 LQPYKG----------WGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND-------------MQQLARETSKDPE 216 (259)
T ss_dssp TSCCTT----------CHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH-------------HHHHHHHHCSCHH
T ss_pred cCCCcc----------chHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCH-------------HHHHhhhcCCCHH
Confidence 666544 678999999999999887653 233444433221 1221111111100
Q ss_pred ec----c-CcccCceeHHHHHHHHHHHHhc
Q 022280 207 FF----H-DECRCPVYVRDVVKIILALTNR 231 (300)
Q Consensus 207 ~~----~-~~~~~~i~v~D~a~~~~~~~~~ 231 (300)
.. . .....+..++|+|++++++++.
T Consensus 217 ~~~~~~~~~~~~r~~~p~evA~~i~~ll~~ 246 (259)
T d1oaaa_ 217 LRSKLQKLKSDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HHHHHHHHHHTTCSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhhh
Confidence 00 0 1233567899999999999875
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.83 E-value=3.6e-20 Score=156.57 Aligned_cols=223 Identities=14% Similarity=0.148 Sum_probs=148.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh----cCCCceeEEEeecCCchhHHHHH----Hh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD----ALPHSFVFFDVDLKSGSGFDAVA----LK 73 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~----~~ 73 (300)
++|++|||||+|+||+++++.|+++| ++|++.+|+.++.....+ ..+.....+.+|+++.++++..+ +.
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~G---a~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 100 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSLG---AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV 100 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhh
Confidence 46899999999999999999999999 999999999765544333 33566778899999999866544 45
Q ss_pred cCCCCEEEEcccccCccccc----cChhhhhhcccccchHHHHHhh----hh-ccCCeEEEeeccccccCCCCCCCCCCC
Q 022280 74 FGQPDVVVNCAALSVPRVCE----NDPDSAMSINVPSSLVNWLSSF----TE-NKENLLIHLSTDQVYEGVKSFYKEEDE 144 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~~l~~~~----~~-~~~~~~v~~SS~~~~~~~~~~~~E~~~ 144 (300)
++++|++||+||........ ..+...+.+|..+.. .+...+ .. .+.+.++.+||.........
T Consensus 101 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~~------- 172 (294)
T d1w6ua_ 101 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTA-FVTLEIGKQLIKAQKGAAFLSITTIYAETGSGF------- 172 (294)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTT-------
T ss_pred ccccchhhhhhhhccccccccchhhhhhhheeeecccch-hhhhhhhcccccccccccccccccchhhhcccc-------
Confidence 68999999999986543222 234456677777664 333322 22 33446777777665544433
Q ss_pred CCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCcee
Q 022280 145 IAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVY 217 (300)
Q Consensus 145 ~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (300)
...|+.+|.+++.+.+.++. ++..+.||.|-.+....... . ......... .. .++..+..
T Consensus 173 ---~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~-~-~~~~~~~~~-~~-------~pl~R~~~ 239 (294)
T d1w6ua_ 173 ---VVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLD-P-TGTFEKEMI-GR-------IPCGRLGT 239 (294)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CC-T-TSHHHHHHH-TT-------CTTSSCBC
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccC-C-cHHHHHHHh-hc-------CCCCCCCC
Confidence 56899999999999987654 44667777775443211100 0 001122222 11 13446788
Q ss_pred HHHHHHHHHHHHhccc--cccccccceeeecCCCccC
Q 022280 218 VRDVVKIILALTNRWL--SEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 218 v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~~~s 252 (300)
++|+|.++.+++.... ..|+ ++.+.+|..+.
T Consensus 240 pediA~~v~fL~sd~s~~itG~----~i~vDGG~~l~ 272 (294)
T d1w6ua_ 240 VEELANLAAFLCSDYASWINGA----VIKFDGGEEVL 272 (294)
T ss_dssp HHHHHHHHHHHTSGGGTTCCSC----EEEESTTHHHH
T ss_pred HHHHHHHHHHHhCchhcCCCCc----EEEECCChhhe
Confidence 9999999999996533 3444 89999886543
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.81 E-value=1.1e-19 Score=150.62 Aligned_cols=201 Identities=13% Similarity=0.036 Sum_probs=144.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCC---Cchhhhhh---cCCCceeEEEeecCCchhHHHHHHhc-
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHST---PLPQLLLD---ALPHSFVFFDVDLKSGSGFDAVALKF- 74 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~---~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~- 74 (300)
..++|||||+|+||+++++.|+++| + +|+++.|+. +....+.+ ..+..+.++.+|++|.++++.+++..
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~G---a~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~ 85 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRG---APHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIG 85 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHT---CSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCC---CCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccc
Confidence 4689999999999999999999999 6 577788863 23333322 23567888999999999988887754
Q ss_pred --CCCCEEEEcccccCcccc----ccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 75 --GQPDVVVNCAALSVPRVC----ENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 75 --~~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
+++|.|||++|....... .+.++..+.+|+.+.. ++.+.+...+.++||++||....-+... .
T Consensus 86 ~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~-~l~~~~~~~~~~~iv~~SS~a~~~g~~~----------~ 154 (259)
T d2fr1a1 86 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGAR-NLHELTRELDLTAFVLFSSFASAFGAPG----------L 154 (259)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHH-HHHHHHTTSCCSEEEEEEEHHHHTCCTT----------C
T ss_pred ccccccccccccccccccccccccHHHHHHHhhhhccchh-HHHHHhhccCCceEeeecchhhccCCcc----------c
Confidence 368999999998754322 2234567899999986 8888888877889999999887655544 6
Q ss_pred ChhHHHHHHHHHHHHHHc---CCceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHH
Q 022280 149 NVYGKSKVAAEKFIYEKC---SNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKII 225 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~---~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 225 (300)
..|+.+|..++.+.+++. .++..+.||.+.+++-... .....+. ......+.++++++++
T Consensus 155 ~~YaAaka~l~~la~~~~~~Gi~v~~I~pg~~~~~g~~~~--------~~~~~~~---------~~G~~~~~~~~~~~~l 217 (259)
T d2fr1a1 155 GGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGSGMAEG--------PVADRFR---------RHGVIEMPPETACRAL 217 (259)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC--------------------CT---------TTTEECBCHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHhCCCCEEECCCCcccCCccccc--------hHHHHHH---------hcCCCCCCHHHHHHHH
Confidence 789999999999887654 4678889888776542110 0111110 1112357799999999
Q ss_pred HHHHhcccc
Q 022280 226 LALTNRWLS 234 (300)
Q Consensus 226 ~~~~~~~~~ 234 (300)
..++.+...
T Consensus 218 ~~~l~~~~~ 226 (259)
T d2fr1a1 218 QNALDRAEV 226 (259)
T ss_dssp HHHHHTTCS
T ss_pred HHHHhCCCc
Confidence 999987543
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.80 E-value=1.1e-19 Score=149.83 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=119.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh----cC-
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK----FG- 75 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~~- 75 (300)
|++|+||||||+++||.+++++|+++|+. +.|++..|+.++..++.+..+.++.++.+|++|.++++++++. ++
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~-~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 79 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNI-RHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTC-CEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCC-CEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence 77899999999999999999999999965 5789899998877777776677888999999999987666543 33
Q ss_pred -CCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhh----hcc-----------CCeEEEeeccccccC
Q 022280 76 -QPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFT----ENK-----------ENLLIHLSTDQVYEG 134 (300)
Q Consensus 76 -~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~----~~~-----------~~~~v~~SS~~~~~~ 134 (300)
++|++|||||..... ...+.++..+++|+.|++ .+.+.+. +.+ ..+++.+||...+-.
T Consensus 80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~ 158 (250)
T d1yo6a1 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVV-LLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT 158 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHH-HHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCST
T ss_pred CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHH-HHHHHHHHHHHHhccCCCCccccceecccccccccccccc
Confidence 499999999975431 122345678999999996 6655543 211 246777776554322
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCC
Q 022280 135 VKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN 168 (300)
Q Consensus 135 ~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~ 168 (300)
... ......+...|+.||.++..+.+.++.+
T Consensus 159 ~~~---~~~~~~~~~aY~aSKaal~~l~~~la~e 189 (250)
T d1yo6a1 159 DNT---SGSAQFPVLAYRMSKAAINMFGRTLAVD 189 (250)
T ss_dssp TCC---STTSSSCBHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc---ccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1112234557999999999998877653
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.80 E-value=1.9e-19 Score=148.27 Aligned_cols=164 Identities=14% Similarity=0.108 Sum_probs=117.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhh---ccCCCceeeecCCCCCchhhhhhc--CCCceeEEEeecCCchhHHHHHHh----
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSE---IEGKPYDVAATHHSTPLPQLLLDA--LPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~---~g~~~~~v~~~~r~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
||+||||||+++||++++++|++ +| ++|++.+|++++.+.+.+. .+.++.++.+|++|+++++++++.
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 78 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPP---QHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV 78 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCC---SEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHH
Confidence 68999999999999999999974 67 8999999998876655432 246788899999999988776653
Q ss_pred --cCCCCEEEEcccccCccc-----cccChhhhhhcccccchHHHHHhhh----hc-----------cCCeEEEeecccc
Q 022280 74 --FGQPDVVVNCAALSVPRV-----CENDPDSAMSINVPSSLVNWLSSFT----EN-----------KENLLIHLSTDQV 131 (300)
Q Consensus 74 --~~~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~~l~~~~~----~~-----------~~~~~v~~SS~~~ 131 (300)
++++|++|||||+..... ..+.++..+++|+.|++ .+.+.+. +. +.+++|++||...
T Consensus 79 ~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~-~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g 157 (248)
T d1snya_ 79 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI-MLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG 157 (248)
T ss_dssp HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGG
T ss_pred hhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHH-HHHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence 468999999999754321 22235678999999996 5555432 21 3468999999654
Q ss_pred ccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeee
Q 022280 132 YEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSII 177 (300)
Q Consensus 132 ~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v 177 (300)
.-... +......|+.||.++..+.+.++. ++..+.||.|
T Consensus 158 ~~~~~-------~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v 203 (248)
T d1snya_ 158 SIQGN-------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWV 203 (248)
T ss_dssp CSTTC-------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSB
T ss_pred ccCCC-------CCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcc
Confidence 31110 111245899999999998887654 3344555555
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2.6e-18 Score=142.23 Aligned_cols=222 Identities=16% Similarity=0.099 Sum_probs=146.6
Q ss_pred CCCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHH----H
Q 022280 1 MSKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVA----L 72 (300)
Q Consensus 1 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~----~ 72 (300)
|.+|++|||||+| +||+++++.|+++| ++|++.+|+++......+.. ......+..|+.+..+....+ +
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G---~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREG---AELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT---CEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhh
Confidence 5789999999998 79999999999999 89999999865443332211 334556788888877655544 3
Q ss_pred hcCCCCEEEEcccccCcccc---------ccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRVC---------ENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~---------~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
.++.+|++||+|+....... .+.+...+.+|+.+.. .+.+.+.. .+-+.+|++||.....+.+.
T Consensus 80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ii~iss~~~~~~~~~---- 154 (258)
T d1qsga_ 80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFV-AMAKACRSMLNPGSALLTLSYLGAERAIPN---- 154 (258)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHH-HHHHHHGGGEEEEEEEEEEECGGGTSBCTT----
T ss_pred cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHH-HHHHHHHHhccCCcEEEEecchhhccCCCC----
Confidence 45789999999987643221 1122344566666664 56555544 23347888898775444333
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.||.+++.+.+.++. ++..++|+.|.-+..... ........... .. .+...
T Consensus 155 ------~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~---~~~~~~~~~~~-~~-------~pl~R 217 (258)
T d1qsga_ 155 ------YNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI---KDFRKMLAHCE-AV-------TPIRR 217 (258)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS---TTHHHHHHHHH-HH-------STTSS
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccccc---chhhhHHHHHH-hC-------CCCCC
Confidence 57899999999999887654 456788988875532111 01111122211 11 12346
Q ss_pred ceeHHHHHHHHHHHHhccc--cccccccceeeecCCCcc
Q 022280 215 PVYVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~~~ 251 (300)
+..++|++.++.+++.... ..|+ ++.+.+|..+
T Consensus 218 ~~~peeia~~v~fL~s~~s~~itG~----~i~vDGG~~i 252 (258)
T d1qsga_ 218 TVTIEDVGNSAAFLCSDLSAGISGE----VVHVDGGFSI 252 (258)
T ss_dssp CCCHHHHHHHHHHHTSGGGTTCCSC----EEEESTTGGG
T ss_pred CcCHHHHHHHHHHHhCchhcCccCc----eEEECcCHHH
Confidence 7889999999999996532 3334 8999888644
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.9e-18 Score=141.03 Aligned_cols=189 Identities=15% Similarity=0.075 Sum_probs=127.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH----Hhc--C
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA----LKF--G 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~--~ 75 (300)
.+|+||||||+|+||+++++.|+++| ++|++++++..... .....+..|..+.+..+.+. +.+ +
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G---~~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARN---WWVASIDVVENEEA-------SASVIVKMTDSFTEQADQVTAEVGKLLGDQ 70 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESSCCTTS-------SEEEECCCCSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCccccc-------cccceeecccCcHHHHHHHHHHHHHHhCCC
Confidence 47999999999999999999999999 89998887654321 11222445555444433222 222 3
Q ss_pred CCCEEEEcccccCcc-----ccccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCCCCCCCCC
Q 022280 76 QPDVVVNCAALSVPR-----VCENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKEEDEIAPV 148 (300)
Q Consensus 76 ~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~ 148 (300)
++|++|||||..... ...+.++..+++|+.+++ .+.+++.. .+-++||++||.....+.+. .
T Consensus 71 ~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~----------~ 139 (236)
T d1dhra_ 71 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTST-ISSHLATKHLKEGGLLTLAGAKAALDGTPG----------M 139 (236)
T ss_dssp CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHH-HHHHHHHHHEEEEEEEEEECCGGGGSCCTT----------B
T ss_pred CceEEEECCcccccccchhcCCHHHHHHHHHHcchHHH-HHHHHHHHhcccccceeEEccHHHcCCccC----------C
Confidence 689999999954321 122345678899999986 66665554 22359999999887766544 6
Q ss_pred ChhHHHHHHHHHHHHHHcCCc---------eeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHH
Q 022280 149 NVYGKSKVAAEKFIYEKCSNF---------AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVR 219 (300)
Q Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~---------~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 219 (300)
..|+.||.+++.+.+.++.++ ..+.|+.+.- .+..... . ......++.++
T Consensus 140 ~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T-------------~~~~~~~-~-------~~~~~~~~~pe 198 (236)
T d1dhra_ 140 IGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDT-------------PMNRKSM-P-------EADFSSWTPLE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEEC-------------HHHHHHS-T-------TSCGGGSEEHH
T ss_pred cccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcC-------------CcchhhC-c-------cchhhcCCCHH
Confidence 799999999999999987654 2344444431 2222221 1 11233578899
Q ss_pred HHHHHHHHHHhcc
Q 022280 220 DVVKIILALTNRW 232 (300)
Q Consensus 220 D~a~~~~~~~~~~ 232 (300)
|+++.+.+++...
T Consensus 199 ~va~~~~~l~s~~ 211 (236)
T d1dhra_ 199 FLVETFHDWITGN 211 (236)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998763
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.2e-18 Score=145.04 Aligned_cols=196 Identities=13% Similarity=0.066 Sum_probs=136.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----CCCceeEEEeecCCchhHHHHH----H
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----LPHSFVFFDVDLKSGSGFDAVA----L 72 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~----~ 72 (300)
|++|++||||||++||++++++|+++| ++|++++|+.+..+.+.++ .+.....+..|+.+.+...... +
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G---~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 88 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMG---AHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGK 88 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHH
Confidence 367999999999999999999999999 9999999997766655432 3456667888988877654433 3
Q ss_pred hcCCCCEEEEcccccCccc----cccChhhhhhcccccchHHHHHhhhh---ccCCeEEEeeccccccCCCCCCCCCCCC
Q 022280 73 KFGQPDVVVNCAALSVPRV----CENDPDSAMSINVPSSLVNWLSSFTE---NKENLLIHLSTDQVYEGVKSFYKEEDEI 145 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~E~~~~ 145 (300)
.++.+|+++|+|+...... +.+.++..+++|+.+++ .+.+.+.. .+-+++|++||...+.+.+.
T Consensus 89 ~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~-~~~~~~lp~m~~~~G~ii~isS~~~~~~~p~-------- 159 (269)
T d1xu9a_ 89 LMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYV-VLTVAALPMLKQSNGSIVVVSSLAGKVAYPM-------- 159 (269)
T ss_dssp HHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCEEEEEEEGGGTSCCTT--------
T ss_pred HhCCccccccccccccccccccCCHHHhhhheeeehhhHH-HHHHHHHHHHHhcCCcceEeccchhcCCCCC--------
Confidence 4678999999999765432 23345678999999986 55444332 33469999999887665544
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCc---------eeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCce
Q 022280 146 APVNVYGKSKVAAEKFIYEKCSNF---------AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216 (300)
Q Consensus 146 ~p~~~Y~~sK~~~e~~~~~~~~~~---------~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (300)
...|+.||.+++.+.+.++.++ ..+.||.|-- .+..... . +.......
T Consensus 160 --~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T-------------~~~~~~~-~-------~~~~~~~~ 216 (269)
T d1xu9a_ 160 --VAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDT-------------ETAMKAV-S-------GIVHMQAA 216 (269)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCC-------------HHHHHHS-C-------GGGGGGCB
T ss_pred --chHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCC-------------cHHHHhc-c-------CCccccCC
Confidence 6799999999999888776532 2344544421 1222221 1 11122346
Q ss_pred eHHHHHHHHHHHHhc
Q 022280 217 YVRDVVKIILALTNR 231 (300)
Q Consensus 217 ~v~D~a~~~~~~~~~ 231 (300)
.++++++.++..+..
T Consensus 217 ~~e~~a~~i~~~~~~ 231 (269)
T d1xu9a_ 217 PKEECALEIIKGGAL 231 (269)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhc
Confidence 688999888877655
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.6e-18 Score=144.77 Aligned_cols=160 Identities=21% Similarity=0.249 Sum_probs=114.0
Q ss_pred CCCeE-EEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhhhhcC---CCceeEEEeecCCchhHHHHH----H
Q 022280 2 SKKRV-LVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLLLDAL---PHSFVFFDVDLKSGSGFDAVA----L 72 (300)
Q Consensus 2 ~~~~i-lItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~----~ 72 (300)
++|+| |||||+++||.+++++|+++ | ++|++.+|+.++.+...+++ +..+.++++|++|.+++++++ +
T Consensus 1 ~g~rVAlVTGas~GIG~a~A~~la~~~g---~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~ 77 (275)
T d1wmaa1 1 SGIHVALVTGGNKGIGLAIVRDLCRLFS---GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRK 77 (275)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSS---SEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHH
Confidence 35666 99999999999999999986 7 89999999977665544433 456788999999999866544 4
Q ss_pred hcCCCCEEEEcccccCcccc----ccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCC--C------
Q 022280 73 KFGQPDVVVNCAALSVPRVC----ENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKS--F------ 138 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~--~------ 138 (300)
+++++|++|||||+...... .+.++..+++|+.|++ .+.+.+.. ..-+++|++||......... +
T Consensus 78 ~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~-~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~ 156 (275)
T d1wmaa1 78 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTR-DVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKF 156 (275)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHH-HHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHH
T ss_pred hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcccccccceeccccccchhhhhhh
Confidence 56899999999998654322 2235578899999996 77666554 22359999999654321110 0
Q ss_pred ----CC-------------------CCCCCCCCChhHHHHHHHHHHHHHH
Q 022280 139 ----YK-------------------EEDEIAPVNVYGKSKVAAEKFIYEK 165 (300)
Q Consensus 139 ----~~-------------------E~~~~~p~~~Y~~sK~~~e~~~~~~ 165 (300)
.. ...+..|...|+.||.....+.+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~l 206 (275)
T d1wmaa1 157 RSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIH 206 (275)
T ss_dssp HCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHH
Confidence 00 0112234668999999998876544
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.75 E-value=2.6e-18 Score=140.15 Aligned_cols=188 Identities=17% Similarity=0.075 Sum_probs=124.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHH----HHHH--hcCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFD----AVAL--KFGQ 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~~~--~~~~ 76 (300)
..|||||||+|.||++++++|+++| ++|++++|+++... .....+.+|..+.+... ...+ ++++
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G---~~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 71 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNG---YTVLNIDLSANDQA-------DSNILVDGNKNWTEQEQSILEQTASSLQGSQ 71 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCCTTS-------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCchhcc-------cccceeccccCchhHHHHHHHHHHHHhcCCC
Confidence 3579999999999999999999999 99999999865322 11122345554443322 2222 2468
Q ss_pred CCEEEEcccccCcc-c----cccChhhhhhcccccchHHHHHhhhh--ccCCeEEEeeccccccCCCCCCCCCCCCCCCC
Q 022280 77 PDVVVNCAALSVPR-V----CENDPDSAMSINVPSSLVNWLSSFTE--NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN 149 (300)
Q Consensus 77 ~d~vih~a~~~~~~-~----~~~~~~~~~~~nv~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~ 149 (300)
+|++|||||..... . ..+.++..+++|+.+++ .+.+.+.. .+-+++|++||.....+.+. ..
T Consensus 72 iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~m~~~g~Iv~isS~~~~~~~~~----------~~ 140 (235)
T d1ooea_ 72 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSA-IAAKLATTHLKPGGLLQLTGAAAAMGPTPS----------MI 140 (235)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHEEEEEEEEEECCGGGGSCCTT----------BH
T ss_pred eeEEEECCcccccccccccCcHHHHhhHhhhHHHHHH-HHhhhcccccccceEEEEeccHHhcCCccc----------cc
Confidence 99999999964321 1 12235567899999885 66555544 12259999999887766544 67
Q ss_pred hhHHHHHHHHHHHHHHcCCce---------eEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHH
Q 022280 150 VYGKSKVAAEKFIYEKCSNFA---------ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220 (300)
Q Consensus 150 ~Y~~sK~~~e~~~~~~~~~~~---------ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 220 (300)
.|+.||.+++.+.+.++.++. .+.|+.+- ..+....+ .. .....++.++|
T Consensus 141 ~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~-------------T~~~~~~~-~~-------~~~~~~~~~~~ 199 (235)
T d1ooea_ 141 GYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLD-------------TPMNRKWM-PN-------ADHSSWTPLSF 199 (235)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBC-------------CHHHHHHS-TT-------CCGGGCBCHHH
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCc-------------CcchhhhC-cC-------CccccCCCHHH
Confidence 999999999999998876532 23333331 12233222 11 12335788999
Q ss_pred HHHHHHHHHhcc
Q 022280 221 VVKIILALTNRW 232 (300)
Q Consensus 221 ~a~~~~~~~~~~ 232 (300)
+++.++.++..+
T Consensus 200 va~~~~~~l~~~ 211 (235)
T d1ooea_ 200 ISEHLLKWTTET 211 (235)
T ss_dssp HHHHHHHHHHCG
T ss_pred HHHHHHHHhcCc
Confidence 999988776654
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.74 E-value=3.5e-17 Score=137.18 Aligned_cols=220 Identities=15% Similarity=0.154 Sum_probs=138.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc-hhhhhh----cCCCceeEE-----------------Eee
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL-PQLLLD----ALPHSFVFF-----------------DVD 60 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~-~~~~~~----~~~~~~~~~-----------------~~D 60 (300)
+..+|||||+++||+++++.|+++| ++|++.+++.+. .+.+.+ ..+.....+ .+|
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~G---a~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d 78 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEG---YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 78 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeeccccccccccccccccc
Confidence 5678999999999999999999999 899988776432 222222 223333333 455
Q ss_pred cCCchhHHHHH----HhcCCCCEEEEcccccCccccc----cC--------------hhhhhhcccccchHHHHHhhh--
Q 022280 61 LKSGSGFDAVA----LKFGQPDVVVNCAALSVPRVCE----ND--------------PDSAMSINVPSSLVNWLSSFT-- 116 (300)
Q Consensus 61 ~~~~~~~~~~~----~~~~~~d~vih~a~~~~~~~~~----~~--------------~~~~~~~nv~~~~~~l~~~~~-- 116 (300)
+++.+++++++ ++++++|++|||||........ +. ....+.+|+.++. .+.+.+.
T Consensus 79 v~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~ 157 (284)
T d1e7wa_ 79 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPY-FLIKAFAHR 157 (284)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeee-eeeccccch
Confidence 77777655544 4578999999999986542211 11 1135678888875 5555432
Q ss_pred --------hccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCC
Q 022280 117 --------ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQ 181 (300)
Q Consensus 117 --------~~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~ 181 (300)
+.+..++|+++|.....+... ...|+.||.+++.+.+.++.+ +..+.||.+--
T Consensus 158 ~~~~~~~~~~~~~~ii~~~s~~~~~~~~~----------~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~-- 225 (284)
T d1e7wa_ 158 VAGTPAKHRGTNYSIINMVDAMTNQPLLG----------YTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL-- 225 (284)
T ss_dssp HHTSCGGGSCSCEEEEEECCTTTTSCCTT----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCC--
T ss_pred hhhhHHHhcCCCCcccccccccccCCccc----------eeeeccccccchhhhHHHHHHhCCccccccccccccccc--
Confidence 123347888888766555433 678999999999999877653 34455553211
Q ss_pred CCCCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 182 TISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
............. ...+ . ...+..++|+|+++++|+...... -.++++.+.+|..++
T Consensus 226 -----~~~~~~~~~~~~~-~~~p--l----~~R~~~peeiA~~v~fL~S~~s~~--itG~~i~VDGG~sl~ 282 (284)
T d1e7wa_ 226 -----VDDMPPAVWEGHR-SKVP--L----YQRDSSAAEVSDVVIFLCSSKAKY--ITGTCVKVDGGYSLT 282 (284)
T ss_dssp -----GGGSCHHHHHHHH-TTCT--T----TTSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTTGGGC
T ss_pred -----cccCCHHHHHHHH-hcCC--C----CCCCCCHHHHHHHHHHHhCchhcC--ccCCeEEECcChhcc
Confidence 1112223333322 2111 1 235778999999999999753311 123389999987665
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.73 E-value=8.9e-17 Score=134.02 Aligned_cols=222 Identities=15% Similarity=0.088 Sum_probs=136.5
Q ss_pred CCCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCCCchhh---hhhcCCCceeEEEeecCCchhHHHH----H
Q 022280 1 MSKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL---LLDALPHSFVFFDVDLKSGSGFDAV----A 71 (300)
Q Consensus 1 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~----~ 71 (300)
|++|++|||||+| +||.+++++|+++| ++|++.+|+++.... +... .....++..|+++.+++.++ .
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~G---a~V~i~~r~~~~~~~~~~l~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQG---ATLAFTYLNESLEKRVRPIAQE-LNSPYVYELDVSKEEHFKSLYNSVK 78 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT---CEEEEEESSTTTHHHHHHHHHH-TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHhh-CCceeEeeecccchhhHHHHHHHHH
Confidence 5789999999877 89999999999999 999999998543222 2222 34455689999998875544 4
Q ss_pred HhcCCCCEEEEcccccCccccc-----cChhhhhhcccc---cchHHHHHhhhh-ccCC-eEEEeeccccccCCCCCCCC
Q 022280 72 LKFGQPDVVVNCAALSVPRVCE-----NDPDSAMSINVP---SSLVNWLSSFTE-NKEN-LLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 72 ~~~~~~d~vih~a~~~~~~~~~-----~~~~~~~~~nv~---~~~~~l~~~~~~-~~~~-~~v~~SS~~~~~~~~~~~~E 141 (300)
+.++.+|++||+++........ .........+.. +.. .+...... .+.. .++.+||.....+...
T Consensus 79 ~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~---- 153 (274)
T d2pd4a1 79 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLI-ELTNTLKPLLNNGASVLTLSYLGSTKYMAH---- 153 (274)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHGGGEEEEEEEEEEECGGGTSBCTT----
T ss_pred HHcCCCCeEEeecccccccccccccccccchhhhhhhcccccccc-ccccccccccccCcceeeeccccccccccc----
Confidence 5578999999999976442211 122222222221 221 22222222 2223 4555566665555433
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.+|.+++.+.+..+. ++..+.|+.+.-+.... ............. ......
T Consensus 154 ------~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~----~~~~~~~~~~~~~-------~~p~~r 216 (274)
T d2pd4a1 154 ------YNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSG----IADFRMILKWNEI-------NAPLRK 216 (274)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGG----STTHHHHHHHHHH-------HSTTSS
T ss_pred ------chhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccc----cCchHHHHHHHhh-------hhhccC
Confidence 67899999999998887543 45667777665432211 1111111111101 113456
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+..++|+|.++.+++..... --.++++.+.+|..
T Consensus 217 ~~~pedIA~~v~fL~S~~s~--~itG~~i~vDGG~~ 250 (274)
T d2pd4a1 217 NVSLEEVGNAGMYLLSSLSS--GVSGEVHFVDAGYH 250 (274)
T ss_dssp CCCHHHHHHHHHHHHSGGGT--TCCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHhChhhC--CCcCceEEECCChh
Confidence 78899999999999976331 11233899988864
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.71 E-value=9e-18 Score=139.70 Aligned_cols=232 Identities=15% Similarity=0.043 Sum_probs=140.0
Q ss_pred CCCCeEEEEcCC--ccchHHHHHhhhhccCCCceeeecCCCCCch-hhhhhcCCCceeEEEeecCCchhHHHHHHh----
Q 022280 1 MSKKRVLVVGGT--GYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-QLLLDALPHSFVFFDVDLKSGSGFDAVALK---- 73 (300)
Q Consensus 1 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---- 73 (300)
|++|++|||||+ .+||++++++|+++| ++|++++|+.++. +.+.+.++.....+++|+++.++...+++.
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~G---a~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~ 80 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQG---AQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEA 80 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTT---CEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcC---CEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhc
Confidence 578999999964 579999999999999 8999999986654 445566666777899999998765554432
Q ss_pred ---cCCCCEEEEcccccCcccc---------ccChhhhhhcccccchHHHHHhhhh-ccCCeEEEeeccccccCCCCCCC
Q 022280 74 ---FGQPDVVVNCAALSVPRVC---------ENDPDSAMSINVPSSLVNWLSSFTE-NKENLLIHLSTDQVYEGVKSFYK 140 (300)
Q Consensus 74 ---~~~~d~vih~a~~~~~~~~---------~~~~~~~~~~nv~~~~~~l~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~ 140 (300)
++.+|+++|+|+....... ...+...+..|+.... ........ .+...++.++|.......+.
T Consensus 81 ~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~~~~~~~p~--- 156 (268)
T d2h7ma1 81 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYA-SMAKALLPIMNPGGSIVGMDFDPSRAMPA--- 156 (268)
T ss_dssp HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHH-HHHHHHGGGEEEEEEEEEEECCCSSCCTT---
T ss_pred cccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHH-HHHHHHhhhcccccccccccccccccCcc---
Confidence 3578999999997542211 1122344566665554 44444433 22234555555554444333
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCC---CCCCCCchHHHHHHHHhcCCceeeccC
Q 022280 141 EEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTI---SPVPKSLPIQWIDSVLSKGEKVEFFHD 210 (300)
Q Consensus 141 E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
...|+.+|.+++.+.+.++. ++..+.|+.+-.+... ................ . ......
T Consensus 157 -------~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 225 (268)
T d2h7ma1 157 -------YNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLE-E---GWDQRA 225 (268)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHH-H---HHHHHC
T ss_pred -------cchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHH-H---HHHhcC
Confidence 56899999999999987654 3455777766432100 0000000000000000 0 000001
Q ss_pred c-ccCceeHHHHHHHHHHHHhccccccccccceeeecCCCccC
Q 022280 211 E-CRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVS 252 (300)
Q Consensus 211 ~-~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~~s 252 (300)
+ .+.+..++|+|+++.+++..... --.++++.+.+|-..+
T Consensus 226 pl~rr~~~p~dva~~v~fL~Sd~a~--~iTG~~i~vDGG~~~~ 266 (268)
T d2h7ma1 226 PIGWNMKDATPVAKTVCALLSDWLP--ATTGDIIYADGGAHTQ 266 (268)
T ss_dssp TTCCCTTCCHHHHHHHHHHHSSSCT--TCCSEEEEESTTGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHhCchhc--CccCCEEEECcCcccc
Confidence 1 24578899999999999954221 1123389998886543
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=8.6e-17 Score=131.51 Aligned_cols=209 Identities=14% Similarity=0.191 Sum_probs=137.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHh---cCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALK---FGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~d~ 79 (300)
.|++|||||+++||+++++.|+++| ++|++.+|+.+.. .....++|+++......+... ....+.
T Consensus 1 DK~alITGas~GIG~aiA~~la~~G---a~V~i~~~~~~~~---------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 68 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARG---YRVVVLDLRREGE---------DLIYVEGDVTREEDVRRAVARAQEEAPLFA 68 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEESSCCSS---------SSEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCcccc---------cceEeeccccchhhhHHHHHhhhccccccc
Confidence 3789999999999999999999999 8999999986542 233478899887754444332 235666
Q ss_pred EEEcccccCcc--------ccccChhhhhhcccccchHHHHHhhh----------hccCCeEEEeeccccccCCCCCCCC
Q 022280 80 VVNCAALSVPR--------VCENDPDSAMSINVPSSLVNWLSSFT----------ENKENLLIHLSTDQVYEGVKSFYKE 141 (300)
Q Consensus 80 vih~a~~~~~~--------~~~~~~~~~~~~nv~~~~~~l~~~~~----------~~~~~~~v~~SS~~~~~~~~~~~~E 141 (300)
++++++..... ...+.++..+++|+.+.. .+...+. +.+.++||++||...+.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~---- 143 (241)
T d1uaya_ 69 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTF-NVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIG---- 143 (241)
T ss_dssp EEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHH-HHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTT----
T ss_pred hhhhhhccccccccccccchhHHHHHHHHHHHhhhhH-HHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCCC----
Confidence 66766643221 112234567899988875 4444332 234468999999887665544
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcCC-------ceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeeccCcccC
Q 022280 142 EDEIAPVNVYGKSKVAAEKFIYEKCSN-------FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRC 214 (300)
Q Consensus 142 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~-------~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (300)
...|+.+|.+++.+.+.++.+ +..+.|+.+--+... ........... ...+ + ...
T Consensus 144 ------~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~-----~~~~~~~~~~~-~~~~--~----~~R 205 (241)
T d1uaya_ 144 ------QAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQ-----GLPEKAKASLA-AQVP--F----PPR 205 (241)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHH-----TSCHHHHHHHH-TTCC--S----SCS
T ss_pred ------chhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccc-----hhhhhHHHHHH-hcCC--C----CCC
Confidence 679999999999999877653 345666665422110 01111222222 1111 1 135
Q ss_pred ceeHHHHHHHHHHHHhccccccccccceeeecCCCc
Q 022280 215 PVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250 (300)
Q Consensus 215 ~i~v~D~a~~~~~~~~~~~~~~~~~~~i~ni~~~~~ 250 (300)
+..++|+|.+++++++.....|+ ++.+.+|..
T Consensus 206 ~g~pedvA~~v~fL~s~~~iTG~----~i~VDGG~~ 237 (241)
T d1uaya_ 206 LGRPEEYAALVLHILENPMLNGE----VVRLDGALR 237 (241)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCSC----EEEESTTCC
T ss_pred CcCHHHHHHHHHHHHhCCCCCCC----EEEECCccc
Confidence 67899999999999986444454 899988754
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.70 E-value=5.9e-16 Score=128.32 Aligned_cols=216 Identities=17% Similarity=0.179 Sum_probs=134.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch-hhhh----hcCCCceeEEEeecCCchh----H----HHH
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-QLLL----DALPHSFVFFDVDLKSGSG----F----DAV 70 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-~~~~----~~~~~~~~~~~~D~~~~~~----~----~~~ 70 (300)
..+|||||+++||+++++.|+++| ++|++++|+.++. +.+. ...+.....++.|..+..+ + +..
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G---~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQG---FRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS 78 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHH
Confidence 368999999999999999999999 8999999986543 2222 2224455556666654332 3 334
Q ss_pred HHhcCCCCEEEEcccccCccccc---------------cChhhhhhcccccchHHHHHhhhh---------ccCCeEEEe
Q 022280 71 ALKFGQPDVVVNCAALSVPRVCE---------------NDPDSAMSINVPSSLVNWLSSFTE---------NKENLLIHL 126 (300)
Q Consensus 71 ~~~~~~~d~vih~a~~~~~~~~~---------------~~~~~~~~~nv~~~~~~l~~~~~~---------~~~~~~v~~ 126 (300)
.++++++|++||+||+....... ..+...+..|+.+.. ........ .....++.+
T Consensus 79 ~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (266)
T d1mxha_ 79 FRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPL-FLIRAFARRQGEGGAWRSRNLSVVNL 157 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHH-HHHHHHHHTC-------CCCEEEEEE
T ss_pred HHHhCCCCEEEECCccCCCCcccccccccchhccccccccccccccccccccc-chhhhhccccccccccccccccchhh
Confidence 45678999999999976532210 112234455555443 22222221 112356666
Q ss_pred eccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHH
Q 022280 127 STDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVL 199 (300)
Q Consensus 127 SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~ 199 (300)
||.....+.+. ...|+.||.+++.+.+.++. ++..+.||.+.-+. .....+.....
T Consensus 158 ~~~~~~~~~~~----------~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~-------~~~~~~~~~~~ 220 (266)
T d1mxha_ 158 CDAMTDLPLPG----------FCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPP-------AMPQETQEEYR 220 (266)
T ss_dssp CCGGGGSCCTT----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCS-------SSCHHHHHHHH
T ss_pred hhccccccCcc----------hhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccc-------cCCHHHHHHHH
Confidence 77665555444 67899999999999887654 34567777664332 12223333322
Q ss_pred hcCCceeeccCcccCceeHHHHHHHHHHHHhccc--cccccccceeeecCCCcc
Q 022280 200 SKGEKVEFFHDECRCPVYVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPDRV 251 (300)
Q Consensus 200 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~~~ 251 (300)
..-++ .|.+..++|+|.++++++.... ..|+ ++++.+|-.+
T Consensus 221 -~~~pl------~r~~~~peeva~~v~fL~s~~s~~itG~----~i~vDGG~~l 263 (266)
T d1mxha_ 221 -RKVPL------GQSEASAAQIADAIAFLVSKDAGYITGT----TLKVDGGLIL 263 (266)
T ss_dssp -TTCTT------TSCCBCHHHHHHHHHHHHSGGGTTCCSC----EEEESTTGGG
T ss_pred -hcCCC------CCCCCCHHHHHHHHHHHhCchhCCccCC----eEEECccHhh
Confidence 22111 1335689999999999997643 2444 8999888654
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.64 E-value=1.1e-15 Score=130.48 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=107.9
Q ss_pred CCCeEEEEc--CCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh----hcC-----------CCceeEE-------
Q 022280 2 SKKRVLVVG--GTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL----DAL-----------PHSFVFF------- 57 (300)
Q Consensus 2 ~~~~ilItG--atG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~----~~~-----------~~~~~~~------- 57 (300)
+.|.+|||| ++.+||+++++.|+++| .+|++.+++........ +.+ .......
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~G---A~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRN---VKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFD 77 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTT---CEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCS
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcC---CEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceeh
Confidence 468899999 55799999999999999 89998877543211110 000 0001111
Q ss_pred -------------EeecCCchhHHH----HHHhcCCCCEEEEcccccCc------cccccChhhhhhcccccchHHHHHh
Q 022280 58 -------------DVDLKSGSGFDA----VALKFGQPDVVVNCAALSVP------RVCENDPDSAMSINVPSSLVNWLSS 114 (300)
Q Consensus 58 -------------~~D~~~~~~~~~----~~~~~~~~d~vih~a~~~~~------~~~~~~~~~~~~~nv~~~~~~l~~~ 114 (300)
..|+++.++++. +.+.++++|++||+||.... +.+.++++..+++|+.+.+ .+.++
T Consensus 78 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~-~~~k~ 156 (329)
T d1uh5a_ 78 TANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLI-SLCKY 156 (329)
T ss_dssp SGGGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH-HHHHH
T ss_pred hhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHH-HHHHH
Confidence 235566665444 44567899999999996542 1233457788999999886 77777
Q ss_pred hhh--ccCCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHcC--------CceeEeeeee
Q 022280 115 FTE--NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS--------NFAILRSSII 177 (300)
Q Consensus 115 ~~~--~~~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~--------~~~ilR~~~v 177 (300)
+.. ...+++|.+||.......+. ....|+.+|.+++.+.+.++. ++..+.||.|
T Consensus 157 ~~~~m~~~GsIv~iss~~~~~~~p~---------y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i 220 (329)
T d1uh5a_ 157 FVNIMKPQSSIISLTYHASQKVVPG---------YGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPL 220 (329)
T ss_dssp HGGGEEEEEEEEEEECGGGTSCCTT---------CTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_pred HHhhcccccccccceeehhcccccc---------cchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcc
Confidence 665 23358999998766544321 245799999999998876543 4455677655
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.63 E-value=2.4e-15 Score=126.65 Aligned_cols=221 Identities=13% Similarity=0.045 Sum_probs=135.0
Q ss_pred CCCCeEEEEcCCc--cchHHHHHhhhhccCCCceeeecCCCCCchhhh---------hhcC---CC--ce-eEEEee---
Q 022280 1 MSKKRVLVVGGTG--YLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL---------LDAL---PH--SF-VFFDVD--- 60 (300)
Q Consensus 1 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~---------~~~~---~~--~~-~~~~~D--- 60 (300)
|++|++|||||+| +||++++++|+++| ++|++.+|++...... .... .. .. .....|
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~G---a~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAG---AEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF 82 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTT---CEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC---CEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 4679999999887 99999999999999 8999988753211000 0000 00 00 111222
Q ss_pred -----------------cCCchh----HHHHHHhcCCCCEEEEcccccCc------cccccChhhhhhcccccchHHHHH
Q 022280 61 -----------------LKSGSG----FDAVALKFGQPDVVVNCAALSVP------RVCENDPDSAMSINVPSSLVNWLS 113 (300)
Q Consensus 61 -----------------~~~~~~----~~~~~~~~~~~d~vih~a~~~~~------~~~~~~~~~~~~~nv~~~~~~l~~ 113 (300)
..+..+ ++.+.++++++|++||+||.... +.+.+.++..+++|+.+.+ .+.+
T Consensus 83 ~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~-~~~~ 161 (297)
T d1d7oa_ 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFV-SLLS 161 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH-HHHH
T ss_pred cccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhh-hhhh
Confidence 123222 34455668899999999997431 1233456788999999996 7777
Q ss_pred hhhhcc--CCeEEEeeccccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH--------cCCceeEeeeeeeCCCCC
Q 022280 114 SFTENK--ENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEK--------CSNFAILRSSIIYGPQTI 183 (300)
Q Consensus 114 ~~~~~~--~~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~--------~~~~~ilR~~~v~G~~~~ 183 (300)
++.... -++++.+++........ .....|+.+|...+.+.+.+ +.++..+.|+.+..+...
T Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~~ 232 (297)
T d1d7oa_ 162 HFLPIMNPGGASISLTYIASERIIP---------GYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAK 232 (297)
T ss_dssp HHGGGEEEEEEEEEEECGGGTSCCT---------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSS
T ss_pred HHHHHhhcCCcceeeeehhhccccc---------ccccceecccccccccccccchhccccceEEecccccccccchhhh
Confidence 665522 23566666554332211 12567999999998876543 346677888888655322
Q ss_pred CCCCCCchHHHHHHHHhcCCceeeccCcccCceeHHHHHHHHHHHHhccc--cccccccceeeecCCC
Q 022280 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPD 249 (300)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~ 249 (300)
. ......+..... ..- ++.++..++|++.++++++.... ..|+ ++.+.+|.
T Consensus 233 ~---~~~~~~~~~~~~-~~~-------PlgR~~~peevA~~v~fL~S~~a~~itGq----~i~vDGG~ 285 (297)
T d1d7oa_ 233 A---IGFIDTMIEYSY-NNA-------PIQKTLTADEVGNAAAFLVSPLASAITGA----TIYVDNGL 285 (297)
T ss_dssp C---CSHHHHHHHHHH-HHS-------SSCCCBCHHHHHHHHHHHTSGGGTTCCSC----EEEESTTG
T ss_pred h---ccCCHHHHHHHH-hCC-------CCCCCCCHHHHHHHHHHHhCchhcCCcCc----eEEECcCH
Confidence 1 111222222222 111 23467889999999999996532 2333 88888874
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.55 E-value=8.3e-14 Score=114.54 Aligned_cols=212 Identities=13% Similarity=0.091 Sum_probs=121.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH----h-cCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL----K-FGQP 77 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~-~~~~ 77 (300)
||.||||||+++||++++++|+++| ++|++.+|+..+ ...|+.+.+....... + .+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~G---a~V~~~~~~~~~--------------~~~d~~~~~~~~~~~~~~~~~~~~~i 63 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAG---HQIVGIDIRDAE--------------VIADLSTAEGRKQAIADVLAKCSKGM 63 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSSS--------------EECCTTSHHHHHHHHHHHHTTCTTCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECChHH--------------HHHHhcCHHHHHHHHHHHHHHhCCCC
Confidence 6889999999999999999999999 899999987543 3456766654333222 2 2469
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHh----hhhccCCeEEEeeccccccCCCC--CCC-----------
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSS----FTENKENLLIHLSTDQVYEGVKS--FYK----------- 140 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~--~~~----------- 140 (300)
|+++|+|+..... ........+|..+.. .+.+. ..+........+++......... +..
T Consensus 64 d~lv~~Ag~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i 139 (257)
T d1fjha_ 64 DGLVLCAGLGPQT---KVLGNVVSVNYFGAT-ELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKA 139 (257)
T ss_dssp SEEEECCCCCTTC---SSHHHHHHHHTHHHH-HHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHH
T ss_pred cEEEEcCCCCCcH---HHHHHHHHHHHHHHH-HHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEE
Confidence 9999999875432 234555666766653 33332 33334445555554332211110 000
Q ss_pred -----CCCCCCCCChhHHHHHHHHHHHHHHcC-------CceeEeeeeeeCCCCCCCCCCCchHHHHHHHHhcCCceeec
Q 022280 141 -----EEDEIAPVNVYGKSKVAAEKFIYEKCS-------NFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF 208 (300)
Q Consensus 141 -----E~~~~~p~~~Y~~sK~~~e~~~~~~~~-------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
-.....+...|+.||.+++.+.+.++. ++..+.|+.+-.+....... ...+..... + .
T Consensus 140 ~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~---~~~~~~~~~-~------~ 209 (257)
T d1fjha_ 140 RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ---DPRYGESIA-K------F 209 (257)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-------------------------------C
T ss_pred eeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcC---CHHHHHHHH-h------c
Confidence 000111234699999999999987754 45667777775432110000 000010000 0 0
Q ss_pred cCcccCceeHHHHHHHHHHHHhccc--cccccccceeeecCCC
Q 022280 209 HDECRCPVYVRDVVKIILALTNRWL--SEDKQMQLLLNVGGPD 249 (300)
Q Consensus 209 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~i~ni~~~~ 249 (300)
..++..+..++|++.++.+|+.... ..|+ ++.+.+|-
T Consensus 210 ~~PlgR~g~p~eva~~v~fL~S~~s~~itG~----~i~vDGG~ 248 (257)
T d1fjha_ 210 VPPMGRRAEPSEMASVIAFLMSPAASYVHGA----QIVIDGGI 248 (257)
T ss_dssp CCSTTSCCCTHHHHHHHHHHTSGGGTTCCSC----EEEESTTH
T ss_pred CCCCCCCcCHHHHHHHHHHHhCchhCCccCc----eEEeCCCc
Confidence 0134578899999999999996532 3344 88888873
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.54 E-value=2.4e-16 Score=124.09 Aligned_cols=148 Identities=11% Similarity=0.060 Sum_probs=100.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC--CceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
|.+|+|+||||+|+||+.+++.|+++| ++|++.+|+.++...+.+.+. ..+....+|+++.+++++.+. ++|
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~iD 94 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEG---AEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK---GAH 94 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT---TCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhc---cchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhc---CcC
Confidence 468999999999999999999999999 899999999777666555442 234457899999877776654 899
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC---CeEEEeeccccccCCCCCCCCCCCCCCCChhHHHH
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE---NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSK 155 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~E~~~~~p~~~Y~~sK 155 (300)
+|||+||........+.++..+++|+.+.+ +....+..... .....+++...++.... +...|..+|
T Consensus 95 ilin~Ag~g~~~~~~e~~~~~~~~nv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---------g~~~y~~sk 164 (191)
T d1luaa1 95 FVFTAGAIGLELLPQAAWQNESSIEIVADY-NAQPPLGIGGIDATDKGKEYGGKRAFGALGI---------GGLKLKLHR 164 (191)
T ss_dssp EEEECCCTTCCCBCHHHHHTCTTCCEEEEC-CCSSSCSBTTCCTTCEEEEETTEEEECHHHH---------HHHHHHHHH
T ss_pred eeeecCccccccCCHHHHHhhhcceeehhH-hhHHHHHHHhhhhccCcEEecceEEEeccCc---------CcHHHHHHH
Confidence 999999975444444556667788887775 54433322111 12223333333332110 123688899
Q ss_pred HHHHHHHHH
Q 022280 156 VAAEKFIYE 164 (300)
Q Consensus 156 ~~~e~~~~~ 164 (300)
.+.+++..+
T Consensus 165 ~a~~~l~~s 173 (191)
T d1luaa1 165 ACIAKLFES 173 (191)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHHHhc
Confidence 988876644
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.25 E-value=4e-07 Score=65.88 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=58.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+|+|.|+ |.+|+.+++.|.+.| ++|++.+++++....+.+.+ ....+.+|.++++.++++- ....|.++-+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g---~~v~vid~d~~~~~~~~~~~--~~~vi~Gd~~~~~~l~~~~--i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKG---HDIVLIDIDKDICKKASAEI--DALVINGDCTKIKTLEDAG--IEDADMYIAV 72 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC--SSEEEESCTTSHHHHHHTT--TTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CCcceecCChhhhhhhhhhh--hhhhccCcccchhhhhhcC--hhhhhhhccc
Confidence 78999996 999999999999999 89999999887777666554 3456899999988666542 2378888876
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.11 E-value=2.5e-06 Score=64.66 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=55.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
.|+|+|.|| |++|+++++.|.++| ++|++.+|+.++...+.+.++.... ...+..+.......+. ..|.++.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g---~~V~v~dr~~~~a~~l~~~~~~~~~-~~~~~~~~~~~~~~i~---~~~~~i~ 73 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSG---IKVTVACRTLESAKKLSAGVQHSTP-ISLDVNDDAALDAEVA---KHDLVIS 73 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTT---CEEEEEESCHHHHHHHHTTCTTEEE-EECCTTCHHHHHHHHT---TSSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEECChHHHHHHHhccccccc-ccccccchhhhHhhhh---ccceeEe
Confidence 589999985 999999999999999 8999999998888887776544322 3344444444444444 6788776
Q ss_pred cc
Q 022280 83 CA 84 (300)
Q Consensus 83 ~a 84 (300)
+.
T Consensus 74 ~~ 75 (182)
T d1e5qa1 74 LI 75 (182)
T ss_dssp CS
T ss_pred ec
Confidence 53
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.06 E-value=1.6e-05 Score=57.89 Aligned_cols=115 Identities=16% Similarity=0.062 Sum_probs=72.7
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCC-ceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH-SFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
||.|+||+|.+|++++-.|+.+|.- -++++.+.++.+... .+..+. .......-+ ...+..+.++ +.|+||.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~-~elvLiDi~~~~~~a-~Dl~~~~~~~~~~~~~-~~~~~~~~~~---~aDivVit 75 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLV-SRLTLYDIAHTPGVA-ADLSHIETRATVKGYL-GPEQLPDCLK---GCDVVVIP 75 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTC-SEEEEEESSSHHHHH-HHHTTSSSSCEEEEEE-SGGGHHHHHT---TCSEEEEC
T ss_pred eEEEECCCChHHHHHHHHHHhCCcc-ceEEEEeccccchhh-HHHhhhhhhcCCCeEE-cCCChHHHhC---CCCEEEEC
Confidence 7999999999999999999998853 467777765432221 121111 111112222 2333444444 89999999
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
||..... .....+.+..|+... +.+++.+.+.+.+.++.+-|
T Consensus 76 ag~~~~~--g~sR~~ll~~N~~i~-~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 76 AGVPRKP--GMTRDDLFNTNATIV-ATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp CSCCCCT--TCCGGGGHHHHHHHH-HHHHHHHHHHCTTSEEEECS
T ss_pred CCcCCCC--CCCcchHHHHHHHHH-HHHHHHHHhcCCCeEEEEec
Confidence 9964322 124456678888777 48999999887765555543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.98 E-value=3.9e-06 Score=64.00 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~ 79 (300)
.+.+|||+||+|.+|+..++.....| .+|+++.+++++.+.+. +.+.. ...|-.+.+..+.+.+.. .++|+
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~G---a~vi~~~~~~~~~~~~~-~~Ga~---~vi~~~~~~~~~~~~~~~~~~Gvd~ 101 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKG---CKVVGAAGSDEKIAYLK-QIGFD---AAFNYKTVNSLEEALKKASPDGYDC 101 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHH-HTTCS---EEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccC---CEEEEeCCCHHHHHHHH-hhhhh---hhcccccccHHHHHHHHhhcCCCce
Confidence 36799999999999999999999999 89999998866544433 33222 224555555455544432 36999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccC
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEG 134 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~ 134 (300)
||++.|... + ...++.++..| +++.++....|+.
T Consensus 102 v~D~vG~~~-----------~--------~~~~~~l~~~G--~~v~~G~~~~~~~ 135 (182)
T d1v3va2 102 YFDNVGGEF-----------L--------NTVLSQMKDFG--KIAICGAISVYNR 135 (182)
T ss_dssp EEESSCHHH-----------H--------HHHGGGEEEEE--EEEECCCGGGTTC
T ss_pred eEEecCchh-----------h--------hhhhhhccCCC--eEEeecceeeccc
Confidence 999976210 0 13444443333 7888877666544
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=2.1e-05 Score=57.33 Aligned_cols=103 Identities=13% Similarity=-0.022 Sum_probs=56.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhcc-CCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIE-GKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g-~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
|++|.|.||||++|+.+++.|+++. +...+++....+.......... .... ...++.+.+ .++ ++|++|
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~-~~~~--~~~~~~~~~----~~~---~~DivF 70 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFG-GTTG--TLQDAFDLE----ALK---ALDIIV 70 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGG-TCCC--BCEETTCHH----HHH---TCSEEE
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccccc-CCce--eeecccchh----hhh---cCcEEE
Confidence 5799999999999999999888753 2224455444432221111110 0111 122333321 233 899999
Q ss_pred EcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccccccCC
Q 022280 82 NCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135 (300)
Q Consensus 82 h~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~ 135 (300)
.+++... . ..+...+.+.|+ +.+.++..+.|...
T Consensus 71 ~a~~~~~------------------s-~~~~~~~~~~g~-~~~VID~Ss~fR~~ 104 (146)
T d1t4ba1 71 TCQGGDY------------------T-NEIYPKLRESGW-QGYWIDAASSLRMK 104 (146)
T ss_dssp ECSCHHH------------------H-HHHHHHHHHTTC-CCEEEECSSTTTTC
T ss_pred EecCchH------------------H-HHhhHHHHhcCC-CeecccCCcccccC
Confidence 9875210 0 366666667777 44445554555443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.94 E-value=5.9e-06 Score=62.92 Aligned_cols=76 Identities=25% Similarity=0.156 Sum_probs=55.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+|||+||+|.+|...++.+...| .+|+++.+++++.+.+ .+++. . ...|..+.+-.+++.+.. .++|+|
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~g---~~vi~~~~~~~~~~~l-~~~Ga--~-~vi~~~~~~~~~~v~~~t~~~g~d~v 98 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMIG---ARIYTTAGSDAKREML-SRLGV--E-YVGDSRSVDFADEILELTDGYGVDVV 98 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHT---CEEEEEESSHHHHHHH-HTTCC--S-EEEETTCSTHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEECCCCCcccccchhhcccc---ccceeeeccccccccc-ccccc--c-ccccCCccCHHHHHHHHhCCCCEEEE
Confidence 5789999999999999999999999 8999998876555443 34332 2 234666665455555433 269999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|++.|
T Consensus 99 ~d~~g 103 (183)
T d1pqwa_ 99 LNSLA 103 (183)
T ss_dssp EECCC
T ss_pred Eeccc
Confidence 99986
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.89 E-value=2.1e-06 Score=66.12 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=37.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA 49 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~ 49 (300)
|||.|+||+|.+|++|++.|++.| ++|++..|++++.+.+.++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G---~~V~l~~R~~e~~~~l~~~ 43 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG---HEIVVGSRREEKAEAKAAE 43 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESSHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHH
Confidence 689999999999999999999999 8999999998776666544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=1.8e-05 Score=59.70 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~ 79 (300)
.+.+|||+||+|.+|...++.+...| .+|+++.+++++.+.+ .+++.. ...|..+.+..+.+.+.. .++|+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G---~~vi~~~~~~~~~~~~-~~~Ga~---~vi~~~~~~~~~~i~~~t~~~g~d~ 100 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYG---LKILGTAGTEEGQKIV-LQNGAH---EVFNHREVNYIDKIKKYVGEKGIDI 100 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHH-HHTTCS---EEEETTSTTHHHHHHHHHCTTCEEE
T ss_pred CCCEEEEEeccccccccccccccccC---cccccccccccccccc-cccCcc---cccccccccHHHHhhhhhccCCceE
Confidence 35789999999999999999999999 8999999876544433 334322 234666666555554433 25899
Q ss_pred EEEccc
Q 022280 80 VVNCAA 85 (300)
Q Consensus 80 vih~a~ 85 (300)
||++.|
T Consensus 101 v~d~~g 106 (174)
T d1yb5a2 101 IIEMLA 106 (174)
T ss_dssp EEESCH
T ss_pred Eeeccc
Confidence 999876
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=7.7e-05 Score=54.14 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=67.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhc-cCCCceeeecCCCCCchhhh-hh--cCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEI-EGKPYDVAATHHSTPLPQLL-LD--ALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~-g~~~~~v~~~~r~~~~~~~~-~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
|||.|+|++|.+|++++-.|..+ +.- .++.+.+..+ ..... .+ +...... ... +...++.+ .++ +.|+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~-~el~L~D~~~-~~~g~a~Dl~h~~~~~~-~~~-~~~~~~~~-~~~---~aDv 72 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSG-SELSLYDIAP-VTPGVAVDLSHIPTAVK-IKG-FSGEDATP-ALE---GADV 72 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT-CEEEEECSST-THHHHHHHHHTSCSSCE-EEE-ECSSCCHH-HHT---TCSE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCC-cEEEEecccc-cchhHHHHHHCCccccC-CcE-EEcCCCcc-ccC---CCCE
Confidence 68999999999999999887643 322 6788777653 22211 11 1111111 111 22222233 334 8999
Q ss_pred EEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCe-EEEee
Q 022280 80 VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL-LIHLS 127 (300)
Q Consensus 80 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~-~v~~S 127 (300)
||.+||..... ...-.+.+..|..-. +.+++.+.+.+.+. ++.+|
T Consensus 73 vvitaG~~~k~--g~~R~dl~~~N~~i~-~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 73 VLISAGVRRKP--GMDRSDLFNVNAGIV-KNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp EEECCSCCCCT--TCCGGGGHHHHHHHH-HHHHHHHHHHCTTSEEEECS
T ss_pred EEECCCccCCC--CcchhhHHHHHHHHH-HHHHHHHHhhCCCcEEEEcc
Confidence 99999975332 123456677887666 38888888877654 44444
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.75 E-value=5.6e-05 Score=54.90 Aligned_cols=112 Identities=12% Similarity=0.077 Sum_probs=68.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc--hhh----hhhc---CCCceeEEEeecCCchhHHHHHHhc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQL----LLDA---LPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~--~~~----~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
|||.|+||+|.+|+.++-.|+.+|.- -++.+.+++++. .+. +.+. .+........--.+. +.+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~-~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~-------~~l 72 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFM-KDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL-------RII 72 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTC-CEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG-------GGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcc-cccccccchhhhHhhhcccccchhcccccccCCccccCCcchH-------HHh
Confidence 68999999999999999999999842 478888776432 111 1111 112222111101121 222
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEe
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHL 126 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~ 126 (300)
.+.|+||-+||...... ....+.+..|..-. ..+++...+.+.+.++.+
T Consensus 73 ~~aDvVVitAG~~~~~g--~sR~dl~~~Na~iv-~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 73 DESDVVIITSGVPRKEG--MSRMDLAKTNAKIV-GKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp TTCSEEEECCSCCCCTT--CCHHHHHHHHHHHH-HHHHHHHHHHCCCEEEEC
T ss_pred ccceEEEEecccccCCC--CChhhhhhhhHHHH-HHHHHHHhccCCCeEEEE
Confidence 38999999999653221 23456678887766 378888877766555544
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.75 E-value=2.7e-05 Score=56.77 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhh--cCCCceeEEEeecCCchhHHHHHHhcC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLD--ALPHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
++|||.|.|+ |.+|+.++..|+.+|.- .++++.++.++.... +.+ ...........|. + .+.
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~-~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~-------~~~ 71 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIA-EEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---S-------DCK 71 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCC-SEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---G-------GGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC-cEEEEeecccchhHHHHHHHhccccccCCceEeeccH---H-------Hhc
Confidence 3579999995 99999999999999843 479999887543321 111 1112222233332 2 123
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
+.|+||.+||...... ....+.+..|+.-. ..+++.+.+.+.+.++.+.|
T Consensus 72 ~adivvitag~~~~~g--~~r~~l~~~N~~i~-~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 72 DADLVVITAGAPQKPG--ESRLDLVNKNLNIL-SSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp TCSEEEECCCC------------CHHHHHHHH-HHHHHHHHHTTCCSEEEECS
T ss_pred cccEEEEecccccCCC--CCHHHHHHHHHHHH-HHHHHHHhhcCCCcEEEEeC
Confidence 8999999998654321 23345566776655 38888888887766655544
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.72 E-value=2.6e-05 Score=58.80 Aligned_cols=99 Identities=18% Similarity=0.097 Sum_probs=61.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+|||+||+|.+|+..++-+...| .+|+++.+++++.....+ ++.... .|-.+. ..+..... +++|+|
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~G---a~Viat~~s~~k~~~~~~-lGa~~v---i~~~~~--~~~~~~~~~~~gvD~v 102 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRG---YTVEASTGKAAEHDYLRV-LGAKEV---LAREDV--MAERIRPLDKQRWAAA 102 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTT---CCEEEEESCTTCHHHHHH-TTCSEE---EECC-----------CCSCCEEEE
T ss_pred CCEEEEEeccchHHHHHHHHHHHcC---CceEEecCchHHHHHHHh-ccccee---eecchh--HHHHHHHhhccCcCEE
Confidence 4679999999999999999999999 899999998777655443 333222 232221 12222221 379999
Q ss_pred EEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecccc
Q 022280 81 VNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQV 131 (300)
Q Consensus 81 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~ 131 (300)
|.+.|-.. +...++.++..| |++.++....
T Consensus 103 id~vgg~~-------------------~~~~l~~l~~~G--riv~~G~~~g 132 (176)
T d1xa0a2 103 VDPVGGRT-------------------LATVLSRMRYGG--AVAVSGLTGG 132 (176)
T ss_dssp EECSTTTT-------------------HHHHHHTEEEEE--EEEECSCCSS
T ss_pred EEcCCchh-------------------HHHHHHHhCCCc--eEEEeecccC
Confidence 99976321 124444444333 8888877543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.72 E-value=1.7e-05 Score=56.98 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=55.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+++|.| .|-+|+++++.|.++| ++|++.+.+++....+.+. ....+.+|.++++.++++- +.++|.||-+
T Consensus 1 k~~iIiG-~G~~G~~la~~L~~~g---~~vvvid~d~~~~~~~~~~---~~~~~~gd~~~~~~l~~a~--i~~a~~vi~~ 71 (134)
T d2hmva1 1 KQFAVIG-LGRFGGSIVKELHRMG---HEVLAVDINEEKVNAYASY---ATHAVIANATEENELLSLG--IRNFEYVIVA 71 (134)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTT---CCCEEEESCHHHHHHTTTT---CSEEEECCTTCTTHHHHHT--GGGCSEEEEC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC---CeEEEecCcHHHHHHHHHh---CCcceeeecccchhhhccC--CccccEEEEE
Confidence 5788887 5899999999999999 8899999887766665433 3445789999998776652 2278888776
Q ss_pred c
Q 022280 84 A 84 (300)
Q Consensus 84 a 84 (300)
.
T Consensus 72 ~ 72 (134)
T d2hmva1 72 I 72 (134)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.67 E-value=0.00011 Score=53.71 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ 44 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~ 44 (300)
.+++|.|.||.|.+|+.+++.|.++| |+|.+.+|+.....
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G---~~V~~~d~~~~~~~ 47 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASG---YPISILDREDWAVA 47 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT---CCEEEECTTCGGGH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcC---CCcEeccccccccc
Confidence 46799999999999999999999999 89999999865443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.67 E-value=2.4e-05 Score=58.01 Aligned_cols=73 Identities=23% Similarity=0.222 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+.+++|||.|+ |-+|+.+++.|...|. -++.+..|+.++...+..+++.. ..+.+++.+.+. ..|+|
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~--~~i~v~nRt~~ka~~l~~~~~~~-------~~~~~~~~~~l~---~~Div 88 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGV--RAVLVANRTYERAVELARDLGGE-------AVRFDELVDHLA---RSDVV 88 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCC--SEEEEECSSHHHHHHHHHHHTCE-------ECCGGGHHHHHH---TCSEE
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCC--cEEEEEcCcHHHHHHHHHhhhcc-------cccchhHHHHhc---cCCEE
Confidence 35789999996 9999999999999993 26888888877777777665332 123344555555 89999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|.+.+.
T Consensus 89 i~atss 94 (159)
T d1gpja2 89 VSATAA 94 (159)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 999663
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=9e-05 Score=51.11 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=54.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
.+||.|.| +|.+|+-++....+.| +++++.+.+++...... .-.++.+|+.|.+.+....... ++|+|--
T Consensus 11 ~~kigIlG-gGQL~rMla~aA~~lG---~~v~v~d~~~~~PA~~v-----a~~~i~~~~~d~~~l~~~~~~~-~~DviT~ 80 (111)
T d1kjqa2 11 ATRVMLLG-SGELGKEVAIECQRLG---VEVIAVDRYADAPAMHV-----AHRSHVINMLDGDALRRVVELE-KPHYIVP 80 (111)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHTTT---CEEEEEESSTTCGGGGG-----SSEEEECCTTCHHHHHHHHHHH-CCSEEEE
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHCC---CEEEEEcCCCCCchhhc-----CCeEEECCCCCHHHHHHHHHhh-CCceEEE
Confidence 46899999 8999999999999999 99999998765433211 1134789999999888877654 7898853
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.65 E-value=3.2e-05 Score=58.10 Aligned_cols=74 Identities=23% Similarity=0.225 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|||+||+|.+|+..++.+...| .+|+++.+++++.+.+. +++... ..|..+ .........++|+||
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G---~~vi~~~~~~~~~~~~~-~lGa~~---~i~~~~---~~~~~~~~~g~D~v~ 96 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMG---LRVLAAASRPEKLALPL-ALGAEE---AATYAE---VPERAKAWGGLDLVL 96 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTT---CEEEEEESSGGGSHHHH-HTTCSE---EEEGGG---HHHHHHHTTSEEEEE
T ss_pred CCCEEEEEeccccchhhhhhhhcccc---ccccccccccccccccc-ccccce---eeehhh---hhhhhhccccccccc
Confidence 35789999999999999999999999 89999998866555443 333221 224332 222233344899999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+.|
T Consensus 97 d~~G 100 (171)
T d1iz0a2 97 EVRG 100 (171)
T ss_dssp ECSC
T ss_pred cccc
Confidence 9866
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=8.5e-05 Score=55.59 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=52.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++|+|||.| +|+.+++++-.|.+.| .+|++..|+.++...+.+.+.........++.+. . ...+|.||
T Consensus 17 ~~k~vlIlG-aGGaarai~~al~~~g---~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~-------~-~~~~dliI 84 (170)
T d1nyta1 17 PGLRILLIG-AGGASRGVLLPLLSLD---CAVTITNRTVSRAEELAKLFAHTGSIQALSMDEL-------E-GHEFDLII 84 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGG-------T-TCCCSEEE
T ss_pred CCCEEEEEC-CcHHHHHHHHHhcccc---eEEEeccchHHHHHHHHHHHhhcccccccccccc-------c-ccccceee
Confidence 478999999 6888999999999999 7899999998777777665533222122222221 1 12789999
Q ss_pred Eccccc
Q 022280 82 NCAALS 87 (300)
Q Consensus 82 h~a~~~ 87 (300)
|+....
T Consensus 85 N~Tp~G 90 (170)
T d1nyta1 85 NATSSG 90 (170)
T ss_dssp ECCSCG
T ss_pred cccccC
Confidence 986543
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.64 E-value=2e-05 Score=57.42 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=28.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
.|+|.|.||||++|+.|++.|.++++...++..+..
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s 37 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS 37 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence 579999999999999999999877654356665443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=4e-05 Score=57.88 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=56.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+|||+||+|.+|..+++.+...| .+|+++++++++.+.+.+. +. . ...|..+.+..+++.+.. .++|+|
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~G---a~Vi~~~~s~~k~~~~~~l-Ga--~-~vi~~~~~d~~~~v~~~t~g~g~d~v 101 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKALG---AKLIGTVGTAQKAQSALKA-GA--W-QVINYREEDLVERLKEITGGKKVRVV 101 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHHHH-TC--S-EEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEEccccccchHHHHHHHHhC---CeEeecccchHHHHHHHhc-CC--e-EEEECCCCCHHHHHHHHhCCCCeEEE
Confidence 5789999999999999999999999 8999999997766554433 32 2 335777766555554432 268999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
+.+.+
T Consensus 102 ~d~~g 106 (179)
T d1qora2 102 YDSVG 106 (179)
T ss_dssp EECSC
T ss_pred EeCcc
Confidence 99876
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=9.7e-05 Score=57.76 Aligned_cols=107 Identities=17% Similarity=0.303 Sum_probs=64.6
Q ss_pred CCCCeEEEEcC----------------CccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCc
Q 022280 1 MSKKRVLVVGG----------------TGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64 (300)
Q Consensus 1 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (300)
|.+++||||+| ||-.|.+|++++..+| .+|++..-+.... .+..+..+. +...
T Consensus 4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~G---a~V~li~g~~~~~------~p~~~~~~~--~~t~ 72 (223)
T d1u7za_ 4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG---ANVTLVSGPVSLP------TPPFVKRVD--VMTA 72 (223)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT---CEEEEEECSCCCC------CCTTEEEEE--CCSH
T ss_pred cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcC---CchhhhhcccccC------cccccccce--ehhh
Confidence 46899999964 6999999999999999 6776655432211 123344333 3443
Q ss_pred hhH-HHHHHhcCCCCEEEEcccccCccccccCh---------hhhhhcccccchHHHHHhhhhcc
Q 022280 65 SGF-DAVALKFGQPDVVVNCAALSVPRVCENDP---------DSAMSINVPSSLVNWLSSFTENK 119 (300)
Q Consensus 65 ~~~-~~~~~~~~~~d~vih~a~~~~~~~~~~~~---------~~~~~~nv~~~~~~l~~~~~~~~ 119 (300)
+++ ..+.+.+...|++|++|++.++....... ...+.+++.-+- .++....+..
T Consensus 73 ~~m~~~~~~~~~~~D~~i~aAAvsDf~~~~~~~~k~Kk~~~~~~~l~L~L~~tp-dIL~~l~~~k 136 (223)
T d1u7za_ 73 LEMEAAVNASVQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNP-DIVAGVAALK 136 (223)
T ss_dssp HHHHHHHHHHGGGCSEEEECCBCCSEEESSCCSSCC-------CEEEEEEEECC-CHHHHHHHCS
T ss_pred HHHHHHHHhhhccceeEeeeechhhhhhhhhhhhhcccccccccccceeeecCH-HHHHHHHhhc
Confidence 433 33445556899999999998764321111 111334455453 6777665433
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.47 E-value=6.4e-05 Score=55.26 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=71.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-------CCceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-------PHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
++||.|.|+ |.+|+.++-.|+..+. .++++.+.+++........+ +.... +.. ..+.++.++
T Consensus 7 ~~KI~IIGa-G~VG~~lA~~l~~~~~--~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~--- 75 (154)
T d1pzga1 7 RKKVAMIGS-GMIGGTMGYLCALREL--ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVS-VRA----EYSYEAALT--- 75 (154)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCC-EEE----ECSHHHHHT---
T ss_pred CCcEEEECC-CHHHHHHHHHHHhCCC--ceEEEEEeccccchhHHHHHhhhccccCCeeE-Eec----cCchhhhhc---
Confidence 468999997 9999999998888884 58888887766443322111 11111 111 111233444
Q ss_pred CCCEEEEcccccCccc---cccChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 76 QPDVVVNCAALSVPRV---CENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
+.|+|+-+||...... ....-.+.+..|+.-.. .+++.+.+.+.+-++.+-|
T Consensus 76 ~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~-~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 76 GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIR-EIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHH-HHHHHHHHHCTTCEEEECC
T ss_pred CCCeEEEecccccCCCCCCcccchhhhhhhhHHHHH-HHHHHHHhcCCCcEEEEeC
Confidence 8999999998754321 11133455677776664 8888888888765555544
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=3.3e-05 Score=49.41 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=35.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL 46 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~ 46 (300)
+++|||+||+|.+|...++.+...| ++|+++.+++++.+.+
T Consensus 32 ~~~vlI~gasGgVG~~aiQlak~~G---~~Vi~~t~s~~k~~~~ 72 (77)
T d1o8ca2 32 DGEIVVTGASGGVGSTAVALLHKLG---YQVVAVSGRESTHEYL 72 (77)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTT---CCEEEEESCGGGHHHH
T ss_pred CCcEEEEeCCCcHHHHHHHHHHHcC---CeEEEEECCHHHHHHH
Confidence 4689999999999999999999999 8999999887665433
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.37 E-value=0.0004 Score=50.48 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=67.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhcC---CCceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDAL---PHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
++||.|+|+ |.+|+.++-.|+.+|.- .++++.++.++.... +.+.. .........| . +.+.
T Consensus 6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d---~-------~~l~ 73 (148)
T d1ldna1 6 GARVVVIGA-GFVGASYVFALMNQGIA-DEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD---Y-------DDCR 73 (148)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCC-SEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC---G-------GGTT
T ss_pred CCeEEEECc-CHHHHHHHHHHHhcCCC-ceEEEEeeccccccchhccHhhCccccCCCeEEEECC---H-------HHhc
Confidence 468999996 99999999999999852 478888887544322 11110 1122212222 2 1223
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCe-EEEee
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL-LIHLS 127 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~-~v~~S 127 (300)
+.|+||.+||...... ....+.+..|+.-. ..+++.+.+.+.+. ++.+|
T Consensus 74 daDvvvitag~~~~~~--~~R~dl~~~N~~i~-~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 74 DADLVVICAGANQKPG--ETRLDLVDKNIAIF-RSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp TCSEEEECCSCCCCTT--TCSGGGHHHHHHHH-HHHHHHHHHHTCCSEEEECS
T ss_pred cceeEEEecccccccC--cchhHHHHHHHHHH-HHHHHHHHhhCCCceEEEec
Confidence 8999999998654321 23345667776655 37788887776654 44443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.00016 Score=53.62 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=33.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL 45 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~ 45 (300)
|||+|+|+ |.+|+.++..|++.| ++|.+..|+++....
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G---~~V~~~~r~~~~~~~ 38 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQG---HEVQGWLRVPQPYCS 38 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSCCSEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCC---CceEEEEcCHHHhhh
Confidence 79999996 999999999999999 899999998765543
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.36 E-value=8.3e-05 Score=55.77 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=42.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
|+||.|.||||++|+.|++.|.+.-+ .++..+..+...-..+.+..+.... ..++... +.+...+ ++|+||-
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~--~ei~~l~s~~~aG~~i~~~~p~~~~--~~~~~~~-~~~~~~~---~~dvvf~ 72 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPE--AKITYLSSRTYAGKKLEEIFPSTLE--NSILSEF-DPEKVSK---NCDVLFT 72 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT--EEEEEEECSTTTTSBHHHHCGGGCC--CCBCBCC-CHHHHHH---HCSEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCC--ceEEEeeccccCCCcccccCchhhc--ccccccc-CHhHhcc---ccceEEE
Confidence 67999999999999999999886543 6666554332222222211111111 1122221 2233444 7899998
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+..
T Consensus 73 a~p 75 (176)
T d1vkna1 73 ALP 75 (176)
T ss_dssp CCS
T ss_pred ccc
Confidence 754
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.33 E-value=6.8e-05 Score=55.18 Aligned_cols=115 Identities=12% Similarity=0.051 Sum_probs=62.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCC----CceeeecCCC--CCchhhhhh----cCCCceeEEEeecCCchhHHHHHH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGK----PYDVAATHHS--TPLPQLLLD----ALPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~----~~~v~~~~r~--~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
.+||.|+||+|++|++++-.|+..+.- ........-. .+....... ........+.. ++ ...+.++
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~ 79 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEA--TD--DPKVAFK 79 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE--ES--CHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccccccccccc--CC--chhhhcc
Confidence 359999999999999999999887631 0111111111 111111111 10111221222 11 1223333
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC-C-eEEEee
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE-N-LLIHLS 127 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~-~-~~v~~S 127 (300)
+.|+||-+||..... .....+.+..|+.-. +.+.+.+.+... . .++.+|
T Consensus 80 ---~advViitaG~~~~p--g~~r~dl~~~N~~i~-~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 80 ---DADYALLVGAAPRKA--GMERRDLLQVNGKIF-TEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp ---TCSEEEECCCCCCCT--TCCHHHHHHHHHHHH-HHHHHHHHHHSCTTCEEEECS
T ss_pred ---cccEEEeecCcCCCC--CCcHHHHHHHHHHHH-HHHHHHHHHhCCCCcEEEEec
Confidence 899999999976432 124456677777665 377777777432 2 444455
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.30 E-value=4.6e-05 Score=57.64 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeec
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT 36 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~ 36 (300)
|++|.|.|||||.|+.|++.|.++-+ +++..+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~--~ei~~l 32 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPH--MTITAL 32 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTT--EEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCC--CceEee
Confidence 68999999999999999999998732 666543
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.29 E-value=0.00012 Score=53.03 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=65.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCC------CceeEEEeecCCchhHHHHHHhcCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP------HSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
+||.|+|+ |.+|+.++-.|+.++.- .++++.+++++........+. .......+ +. +.+.+.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~-------~~~~~a 69 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTA-NELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG---DY-------SDVKDC 69 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCS-SEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CG-------GGGTTC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCC-CEEEEEeccCCccceeeeeeccCcccCCCeeEeeC---cH-------HHhCCC
Confidence 57999996 99999999999999853 479999988665332221111 11111111 11 223389
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEe
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHL 126 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~ 126 (300)
|+|+-+||..... .....+.+..|+.-.. .+++.+.+.+.+.++.+
T Consensus 70 divvitag~~~~~--~~~r~~l~~~N~~i~~-~i~~~i~~~~p~ai~iv 115 (142)
T d1y6ja1 70 DVIVVTAGANRKP--GETRLDLAKKNVMIAK-EVTQNIMKYYNHGVILV 115 (142)
T ss_dssp SEEEECCCC--------CHHHHHHHHHHHHH-HHHHHHHHHCCSCEEEE
T ss_pred ceEEEecccccCc--CcchhHHhhHHHHHHH-HHHHHhhccCCCceEEE
Confidence 9999999965432 1245566778877663 88888888777544444
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00057 Score=45.33 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+.+|+|+|.|. |-.|..+++.|.++| ++|++.+.+..... .+.+.....++.... + +..+. ++|.|
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g---~~v~~~D~~~~~~~--~~~~~~~~~~~~~~~-~----~~~~~---~~d~v 68 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARG---VTPRVMDTRMTPPG--LDKLPEAVERHTGSL-N----DEWLM---AADLI 68 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTT---CCCEEEESSSSCTT--GGGSCTTSCEEESBC-C----HHHHH---HCSEE
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCC---CEEEEeeCCcCchh--HHHHhhccceeeccc-c----hhhhc---cCCEE
Confidence 35789999995 778999999999999 88999888654321 122223333333332 1 22334 78999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|-..|+
T Consensus 69 i~SPGi 74 (93)
T d2jfga1 69 VASPGI 74 (93)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 998775
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.00039 Score=52.42 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh---hcCCC--ceeEEEeecCCchhHHHHHHhcCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL---DALPH--SFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~---~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
.+++|+|+| +|+.|++++..|.+.|. -++++..|+++..+++. +.+.. .......|+.+.+.+..... .
T Consensus 17 ~~k~vlIlG-aGGaarai~~al~~~g~--~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 90 (182)
T d1vi2a1 17 KGKTMVLLG-AGGASTAIGAQGAIEGL--KEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALA---S 90 (182)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC--SEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH---T
T ss_pred CCCEEEEEC-CcHHHHHHHHHHhhcCC--ceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhc---c
Confidence 468999999 58899999999999985 47888899877655432 22211 12234667777666665555 8
Q ss_pred CCEEEEcccc
Q 022280 77 PDVVVNCAAL 86 (300)
Q Consensus 77 ~d~vih~a~~ 86 (300)
+|.|||+...
T Consensus 91 ~diiIN~Tp~ 100 (182)
T d1vi2a1 91 ADILTNGTKV 100 (182)
T ss_dssp CSEEEECSST
T ss_pred cceeccccCC
Confidence 9999999654
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.24 E-value=0.00049 Score=49.45 Aligned_cols=110 Identities=10% Similarity=0.034 Sum_probs=68.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh----hc--CCCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL----DA--LPHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~----~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
|||.|.|+ |.+|+.++-.|+.++.- .++.+.+.+++...... +. +......... +.+ .+.+.
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~-~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~---~~~-------~~~~a 68 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFA-REMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG---DYA-------DLKGS 68 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCC-SEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEEC---CGG-------GGTTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCC-CEEEEEecccccccchhccccccccccccccccCC---cHH-------HhcCC
Confidence 68999996 99999999999998853 57888887754332211 11 1112221221 221 12389
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
|+||-+||...... ....+.+..|..-. ..+++.+.+.+.+.++.+-|
T Consensus 69 divvitag~~~~~g--~~r~dl~~~N~~I~-~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 69 DVVIVAAGVPQKPG--ETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp SEEEECCCCCCCSS--CCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECS
T ss_pred CEEEEecccccCCC--cchhhhhccccchH-HHHHHHHHhcCCCcEEEEeC
Confidence 99999999754321 23445667776554 37888888877765555533
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.22 E-value=0.00081 Score=48.32 Aligned_cols=109 Identities=17% Similarity=0.054 Sum_probs=67.9
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC--chh----hhhh--cCCCceeEEEeecCCchhHHHHHHhcC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP--LPQ----LLLD--ALPHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~--~~~----~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
.||.|+||+|.+|+.++-.|+.++.- -++++.+.... ... .+.+ .+.........| .++ +.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~-~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~---~~~-------~~ 69 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIA-DEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG---YED-------TA 69 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCC-SEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC---GGG-------GT
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCC-CEEEEEecCCcccccceeecchhhcccccCCceEeeCC---HHH-------hh
Confidence 47999999999999999999999853 46777765321 111 1111 122233322222 221 23
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEe
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHL 126 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~ 126 (300)
+.|+||-+||..... ...-.+.++.|..-.. .+++...+.+.+.++.+
T Consensus 70 ~aDiVvitaG~~~~~--g~~R~dl~~~N~~I~~-~i~~~i~~~~p~~i~iv 117 (142)
T d1o6za1 70 GSDVVVITAGIPRQP--GQTRIDLAGDNAPIME-DIQSSLDEHNDDYISLT 117 (142)
T ss_dssp TCSEEEECCCCCCCT--TCCHHHHHHHHHHHHH-HHHHHHHTTCSCCEEEE
T ss_pred hcCEEEEeccccccc--CCchhhHHHHHHHHHH-HHHHHHHhcCCCceEEE
Confidence 899999999965332 1244567788877663 88888888776544433
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.22 E-value=0.0011 Score=47.62 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=68.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-------CCceeEEEeecCCchhHHHHHHhcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-------PHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|||.|+|| |.+|+.++..|+.+|.- .++.+.+.+++........+ ..... +... .+.+ .+.+
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~-~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~-i~~~-~~~~-------~~~d 69 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLA-RELVLLDVVEGIPQGKALDMYESGPVGLFDTK-VTGS-NDYA-------DTAN 69 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCC-SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCE-EEEE-SCGG-------GGTT
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCC-ceEEEeccccccchhhhhhhhcccchhcccce-EEec-CCHH-------HhcC
Confidence 68999996 99999999999998853 58888888866543221111 11222 1111 2222 1238
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEe
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHL 126 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~ 126 (300)
.|+|+-+||...... ..-.+.+..|..-.. .+++.+.+.+.+-++.+
T Consensus 70 advvvitag~~~~~g--~~r~~l~~~N~~i~~-~i~~~i~~~~p~aiviv 116 (142)
T d1guza1 70 SDIVIITAGLPRKPG--MTREDLLMKNAGIVK-EVTDNIMKHSKNPIIIV 116 (142)
T ss_dssp CSEEEECCSCCCCTT--CCHHHHHHHHHHHHH-HHHHHHHHHCSSCEEEE
T ss_pred CeEEEEEEecCCCCC--CchHHHHHHHHHHHH-HHHHHhhccCCCeEEEE
Confidence 999999999654321 134456677776653 78888887766544444
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.19 E-value=0.00042 Score=50.10 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=24.4
Q ss_pred CeEEEEcCCccchHHHHHhhhhcc-CCCceeee
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIE-GKPYDVAA 35 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g-~~~~~v~~ 35 (300)
|||.|.||||+.|+.|++.|+++. +...++..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~ 33 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVF 33 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEE
Confidence 689999999999999999888643 32244443
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=97.13 E-value=5.3e-05 Score=56.55 Aligned_cols=43 Identities=30% Similarity=0.366 Sum_probs=37.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA 49 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~ 49 (300)
.+|||+||+|.+|...++.....| .+|+++.+++++.+.+.+.
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~~G---a~Viat~~s~~k~~~~~~l 67 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNKRG---YDVVASTGNREAADYLKQL 67 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHHT---CCEEEEESSSSTHHHHHHH
T ss_pred CEEEEeCCcchHHHHHHHHHHHcC---CceEEEecCHHHHHHHHhh
Confidence 479999999999999999999999 8999999998776655443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.11 E-value=0.00033 Score=53.07 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=50.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCce-eeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEEE
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVVV 81 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~vi 81 (300)
.+|||+||+|.+|+..++.....| .+ |+++..++++...+...++.. ...|..+.+..+.+.+.. .++|+||
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~G---a~~vi~~~~~~e~~~~l~~~~gad---~vi~~~~~~~~~~~~~~~~~GvDvv~ 105 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLG---CSRVVGICGTQEKCLFLTSELGFD---AAVNYKTGNVAEQLREACPGGVDVYF 105 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTT---CSEEEEEESSHHHHHHHHHHSCCS---EEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcC---CcceecccchHHHHhhhhhcccce---EEeeccchhHHHHHHHHhccCceEEE
Confidence 679999999999999999999999 55 444455544444454444332 345666655433333322 3699999
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+.|
T Consensus 106 D~vG 109 (187)
T d1vj1a2 106 DNVG 109 (187)
T ss_dssp ESSC
T ss_pred ecCC
Confidence 9976
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.09 E-value=0.00037 Score=52.03 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|+|.| +|+.+++++..|.+.+ -+|+++.|+.++...+.+.+.........+..+. ....+|.||
T Consensus 17 ~~k~vlIlG-aGGaarai~~aL~~~~---~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~--------~~~~~diiI 84 (171)
T d1p77a1 17 PNQHVLILG-AGGATKGVLLPLLQAQ---QNIVLANRTFSKTKELAERFQPYGNIQAVSMDSI--------PLQTYDLVI 84 (171)
T ss_dssp TTCEEEEEC-CSHHHHTTHHHHHHTT---CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC--------CCSCCSEEE
T ss_pred CCCEEEEEC-CcHHHHHHHHHHcccC---ceeeeccchHHHHHHHHHHHhhccccchhhhccc--------cccccceee
Confidence 468999999 6788999999999876 7899999998777777665433222222221111 123799999
Q ss_pred Eccccc
Q 022280 82 NCAALS 87 (300)
Q Consensus 82 h~a~~~ 87 (300)
|+....
T Consensus 85 N~tp~g 90 (171)
T d1p77a1 85 NATSAG 90 (171)
T ss_dssp ECCCC-
T ss_pred eccccc
Confidence 996654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00039 Score=50.79 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=56.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc-CCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA-LPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
+.+|+|.|. |-+|+.+++.|.++| ++|++...+++........ ...++.++.+|.++++.++.+- ..+++.||
T Consensus 3 knHiII~G~-g~~g~~l~~~L~~~~---~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~--i~~a~~vi 76 (153)
T d1id1a_ 3 KDHFIVCGH-SILAINTILQLNQRG---QNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAG--IDRCRAIL 76 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTT---CCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHT--TTTCSEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhc--cccCCEEE
Confidence 457899995 899999999999999 7888888776543333322 2456788999999988665542 23788888
Q ss_pred Ecc
Q 022280 82 NCA 84 (300)
Q Consensus 82 h~a 84 (300)
-+.
T Consensus 77 ~~~ 79 (153)
T d1id1a_ 77 ALS 79 (153)
T ss_dssp ECS
T ss_pred Ecc
Confidence 874
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.08 E-value=0.00023 Score=53.33 Aligned_cols=113 Identities=15% Similarity=0.096 Sum_probs=64.0
Q ss_pred eEEEEcCCccchHHHHHhhhhcc---CC-CceeeecCCCCCc--hhhhhhcC----CCceeEEEeecCCchhHHHHHHhc
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIE---GK-PYDVAATHHSTPL--PQLLLDAL----PHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g---~~-~~~v~~~~r~~~~--~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
+|.|+||+|.||++++-.|++.. .+ ..+++..+.+... ...+...+ ..... ..-.++ +..+.++
T Consensus 26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~--~~~~~~--~~~~~~~-- 99 (175)
T d7mdha1 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLR--EVSIGI--DPYEVFE-- 99 (175)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEE--EEEEES--CHHHHTT--
T ss_pred EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccccccc--Cccccc--cchhhcc--
Confidence 79999999999999999988753 11 1345555544321 11111111 11111 111111 1233334
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccC-C-eEEEee
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE-N-LLIHLS 127 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~-~-~~v~~S 127 (300)
+.|+||-+||..... .....+.+..|..-. ..+.+++.+... . +++.+|
T Consensus 100 -~aDvVvi~ag~~rkp--g~tR~Dll~~N~~I~-k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 100 -DVDWALLIGAKPRGP--GMERAALLDINGQIF-ADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp -TCSEEEECCCCCCCT--TCCHHHHHHHHHHHH-HHHHHHHHHHSCTTCEEEECS
T ss_pred -CCceEEEeeccCCCC--CCcHHHHHHHHHHHH-HHHHHHHHhhCCCCcEEEEec
Confidence 899999999875432 224556777787665 378888877433 2 455555
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.07 E-value=0.0004 Score=51.62 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=50.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCC--chhHHHHHH-hc-CCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS--GSGFDAVAL-KF-GQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~-~~-~~~d 78 (300)
+.+|+|+| +|.+|...++.+...| .+|+++++++++.+... +++.... +..|-.+ .+++.+.+. .. .++|
T Consensus 27 g~~vlV~G-~G~vG~~~~~~ak~~G---a~vi~v~~~~~r~~~a~-~~ga~~~-~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 27 GTTVLVIG-AGPIGLVSVLAAKAYG---AFVVCTARSPRRLEVAK-NCGADVT-LVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHH-HTTCSEE-EECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCEEEEEc-ccccchhhHhhHhhhc---ccccccchHHHHHHHHH-HcCCcEE-EeccccccccchhhhhhhcccccCCc
Confidence 57899997 7899999999999999 89999998866654333 3333222 2223222 222222222 22 3699
Q ss_pred EEEEccc
Q 022280 79 VVVNCAA 85 (300)
Q Consensus 79 ~vih~a~ 85 (300)
+||.++|
T Consensus 101 ~vid~~g 107 (170)
T d1e3ja2 101 VTIDCSG 107 (170)
T ss_dssp EEEECSC
T ss_pred eeeecCC
Confidence 9999987
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.04 E-value=0.0011 Score=47.58 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=65.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-------CCceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-------PHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
++||-|+|+ |.+|+.++-.|+.++. .++++.+..++........+ +.... +.+ -.|.+ + +.
T Consensus 1 r~KI~IIGa-G~VG~~~A~~l~~~~l--~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~-i~~-~~d~~---~----~~ 68 (142)
T d1uxja1 1 RKKISIIGA-GFVGSTTAHWLAAKEL--GDIVLLDIVEGVPQGKALDLYEASPIEGFDVR-VTG-TNNYA---D----TA 68 (142)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC--SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCC-EEE-ESCGG---G----GT
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCc--ceEEEEeeccccchhHHHHhhccccccCCCCE-EEe-cCcHH---H----hc
Confidence 368999995 9999999999988874 58888888766443221111 11111 111 01221 1 22
Q ss_pred CCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
+.|+||-+||...... ....+.+..|..-. ..+++...+.+.+.++.+-|
T Consensus 69 ~advvvitag~~~~~~--~~r~dl~~~N~~i~-~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 69 NSDVIVVTSGAPRKPG--MSREDLIKVNADIT-RACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp TCSEEEECCSCC-----------CHHHHHHHH-HHHHHHHGGGCTTCEEEECS
T ss_pred CCCEEEEeeeccCCcC--cchhHHHhHHHHHH-HHHHHHHhccCCCceEEEeC
Confidence 8999999999654221 12345566676554 38888888877765555533
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.02 E-value=0.00049 Score=50.49 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=67.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhcC---CCceeEEEeecCCchhHHHHHHh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDAL---PHSFVFFDVDLKSGSGFDAVALK 73 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~~---~~~~~~~~~D~~~~~~~~~~~~~ 73 (300)
|+..||.|+|+ |.+|+.++-.|+.+|.- .++++.+++++.... +.+.. +........ +.+ .
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~-~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~---d~~-------~ 84 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLA-DELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGK---DYN-------V 84 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSC-SEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEES---SGG-------G
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCC-CEEEEEeCCchhhhccHHHHhCcchhcCCCeEEecc---chh-------h
Confidence 34568999995 99999999999999853 478888877543321 21111 111111122 221 1
Q ss_pred cCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCe-EEEee
Q 022280 74 FGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL-LIHLS 127 (300)
Q Consensus 74 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~-~v~~S 127 (300)
..+.|+||.+||...... ....+.++.|+.-. ..+++.+.+.+.+- ++.+|
T Consensus 85 ~~~adivvitag~~~~~~--~~R~dll~~N~~i~-~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 85 SANSKLVIITAGARMVSG--QTRLDLLQRNVAIM-KAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp GTTEEEEEECCSCCCCTT--TCSSCTTHHHHHHH-HHHTTTHHHHSTTCEEEECS
T ss_pred hccccEEEEecccccCCC--CCHHHHHHHHHHHH-HHHHHHHhccCCCeEEEEeC
Confidence 238999999998654331 23344566676555 36777777766654 44444
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.01 E-value=0.00057 Score=50.76 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=53.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+|+|.|++|.+|...++.+...|. .+|++..+++++.+.+. +++.. ...|..+.+..++..+.. +++|+|
T Consensus 28 g~~vlV~G~~G~vG~~~~~~~~~~g~--~~V~~~~~~~~~~~~~~-~~Ga~---~~i~~~~~~~~~~~~~~~~~~~~d~v 101 (170)
T d1jvba2 28 TKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVREEAVEAAK-RAGAD---YVINASMQDPLAEIRRITESKGVDAV 101 (170)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSHHHHHHHH-HHTCS---EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCEEEEEeccccceeeeeeccccccc--ccccccccchhhHHHHH-HcCCc---eeeccCCcCHHHHHHHHhhcccchhh
Confidence 46899999999999999999999984 37888887755444333 33322 234555555555555443 258999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|.+++
T Consensus 102 id~~g 106 (170)
T d1jvba2 102 IDLNN 106 (170)
T ss_dssp EESCC
T ss_pred hcccc
Confidence 99976
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.95 E-value=0.00095 Score=48.22 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=65.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhc---CCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDA---LPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
+||-|+| +|.+|+.++-.|+.+|.- .++++.+.++++... +.+. .+....... .|.++ +.+
T Consensus 2 kKI~IIG-aG~VG~~~a~~l~~~~~~-~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~---~d~~~-------l~~ 69 (146)
T d1hyha1 2 RKIGIIG-LGNVGAAVAHGLIAQGVA-DDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI---NDWAA-------LAD 69 (146)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCC-SEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE---SCGGG-------GTT
T ss_pred CeEEEEC-cCHHHHHHHHHHHhcCCC-ceEEEEecccchhhhHHHhhhccccccCCccceec---cCHHH-------hcc
Confidence 6899999 599999999999998843 578888876543321 1111 111222122 23221 228
Q ss_pred CCEEEEcccccCccccc--cChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 77 PDVVVNCAALSVPRVCE--NDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~--~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
.|+||-+||........ ..-.+.+..|+.-. ..+++.+.+.+.+.++.+-|
T Consensus 70 adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~-~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 70 ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMV-QSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp CSEEEECCSCGGGTC-------CTTHHHHHHHH-HHHHHHHHHTTCCSEEEECS
T ss_pred ccEEEEeccccccccccCCccHHHHHHHHHHHH-HHHHHHHhhcCCCeEEEEec
Confidence 99999999965422110 01123456676555 37888888777665554443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00011 Score=55.38 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=36.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL 47 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~ 47 (300)
.+|||+||+|.+|+..++.....| .+|+++.+++++.+.+.
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~G---a~Via~~~~~~k~~~~~ 73 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLG---YQVVAVSGRESTHEYLK 73 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTT---CCEEEEESCGGGHHHHH
T ss_pred CcEEEEEccccchHHHHHHHHHcC---CCeEEEecchhHHHHHH
Confidence 479999999999999999999999 89999999877765444
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.93 E-value=0.0016 Score=46.70 Aligned_cols=111 Identities=15% Similarity=0.021 Sum_probs=68.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhc---CCCceeEEEeecCCchhHHHHHHhcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDA---LPHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|||.|+|+ |.+|+.++-.|+.+|.- .++++.+.+++.... +.+. .+........ .|.+ .+.+
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~-~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~--~d~~-------~~~~ 69 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDV-DEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYS-------LLKG 69 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCC-SEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCGG-------GGTT
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcC-ceEEEEecccchhhHHHHHHhhhccccCCCCccccC--CCHH-------Hhcc
Confidence 68999995 99999999999988853 578888877544322 1111 1121221111 1211 2238
Q ss_pred CCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeec
Q 022280 77 PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128 (300)
Q Consensus 77 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS 128 (300)
.|+||-.||..... .....+.+..|..-.. .+++.+.+.+...++.+-|
T Consensus 70 adiVvitag~~~~~--g~~r~~l~~~n~~i~~-~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 70 SEIIVVTAGLARKP--GMTRLDLAHKNAGIIK-DIAKKIVENAPESKILVVT 118 (142)
T ss_dssp CSEEEECCCCCCCS--SCCHHHHHHHHHHHHH-HHHHHHHTTSTTCEEEECS
T ss_pred ccEEEEeccccCCC--CCchHHHHHHhhHHHH-HHHHHHHhhCCCcEEEEec
Confidence 99999999865432 1234566777776653 7888888877665555443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.88 E-value=0.002 Score=47.10 Aligned_cols=111 Identities=16% Similarity=0.099 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhc---CCCceeEEEeecCCchhHHHHHHhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDA---LPHSFVFFDVDLKSGSGFDAVALKF 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (300)
+.+||-|.|+ |.+|+.++-.|+.+|.- -++++.+++++.... +.+. .+....... .+.+ .+
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~-~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~---~d~~-------~~ 86 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLA-DELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD---KDYS-------VT 86 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCC-SEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEEC---SSGG-------GG
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCC-cEEEEEEeccchhHHHHHHHhccccccCCCeEEec---cchh-------hc
Confidence 3568999995 99999999999999953 478888876543321 1110 011111111 2221 12
Q ss_pred CCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeE-EEee
Q 022280 75 GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL-IHLS 127 (300)
Q Consensus 75 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~-v~~S 127 (300)
.+.|+|+..||..... .....+.+..|+.-. ..+++.+.+.+.+.+ +.+|
T Consensus 87 ~~adiVVitAg~~~~~--g~tR~~l~~~N~~i~-~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 87 ANSKIVVVTAGVRQQE--GESRLNLVQRNVNVF-KFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp TTCSEEEECCSCCCCT--TCCGGGGHHHHHHHH-HHHHHHHHHHCTTCEEEECS
T ss_pred ccccEEEEecCCcccc--CcchHHHHHHHHHHH-HHHHHHHHhcCCCcEEEEeC
Confidence 3899999999975432 123455667777655 378888888776544 4444
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.85 E-value=0.00029 Score=53.27 Aligned_cols=34 Identities=21% Similarity=0.498 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH 37 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~ 37 (300)
++.||.|.||||+.|+.|++.|.+.-+ +++..+.
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~--~ei~~l~ 37 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQ--FRIKVMT 37 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSS--EEEEEEE
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCC--ceEEEEe
Confidence 456899999999999999999998643 6665543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.85 E-value=0.00049 Score=50.73 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=48.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|||-|.| .|.+|+.+++.|+++| ++|++.+|++++.+.+.+.. .. . .. +..++.+ ..|+||-|
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G---~~V~~~d~~~~~~~~~~~~~---~~--~--~~---~~~e~~~---~~d~ii~~ 63 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAG---YSLVVSDRNPEAIADVIAAG---AE--T--AS---TAKAIAE---QCDVIITM 63 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHTT---CE--E--CS---SHHHHHH---HCSEEEEC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCC---CeEEEEeCCcchhHHHHHhh---hh--h--cc---cHHHHHh---CCCeEEEE
Confidence 6799998 8999999999999999 99999999977776665431 11 1 12 2355555 78999987
Q ss_pred c
Q 022280 84 A 84 (300)
Q Consensus 84 a 84 (300)
-
T Consensus 64 v 64 (161)
T d1vpda2 64 L 64 (161)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.84 E-value=0.0043 Score=44.84 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=68.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-------CCceeEEEeecCCchhHHHHHHhcC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-------PHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
++||-|.|+ |.+|+.++-.|+.++. .++.+.++.++........+ ......... .+. +.+.
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l--~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~--~~~-------~~~~ 70 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNL--GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS--NTY-------DDLA 70 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE--CCG-------GGGT
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCC--CeEEEEeccCCcceeeecchhhhccccCCCcEEEec--ccc-------cccC
Confidence 578999995 9999999988877775 58888888765543322111 111221111 111 1223
Q ss_pred CCCEEEEcccccCccccc---cChhhhhhcccccchHHHHHhhhhccCCeEEEee
Q 022280 76 QPDVVVNCAALSVPRVCE---NDPDSAMSINVPSSLVNWLSSFTENKENLLIHLS 127 (300)
Q Consensus 76 ~~d~vih~a~~~~~~~~~---~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~S 127 (300)
+.|+|+-+||........ ..-...+..|..-.. .+++.+++.+.+.++.+-
T Consensus 71 ~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~-~i~~~i~~~~p~aivivv 124 (150)
T d1t2da1 71 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMI-EIGGHIKKNCPNAFIIVV 124 (150)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHH-HHHHHHHHHCTTSEEEEC
T ss_pred CCcEEEEecccccCCCCCccccchhHHHHHHHHHHH-HHHHHHHhcCCCeEEEEe
Confidence 899999999965432111 123455777776653 888888887776555443
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.81 E-value=0.0013 Score=50.40 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=33.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhh
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL 46 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~ 46 (300)
|+|.|.| .|++|..++..|++.| ++|++.+.+++..+.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g---~~V~g~D~n~~~i~~l 39 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARG---HEVIGVDVSSTKIDLI 39 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT---CEEEEECSCHHHHHHH
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCC---CcEEEEeCCHHHHHHh
Confidence 6899997 9999999999999999 8999999876555444
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00067 Score=50.31 Aligned_cols=73 Identities=25% Similarity=0.194 Sum_probs=49.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+.+|+|.|+ |.+|...++.+...| .+++++++++++.+. ..+++.. ...|..+.+.. ....+++|++|.
T Consensus 31 G~~VlI~Ga-G~vG~~a~qlak~~G---a~~i~~~~~~~~~~~-a~~lGad---~~i~~~~~~~~---~~~~~~~D~vid 99 (168)
T d1uufa2 31 GKKVGVVGI-GGLGHMGIKLAHAMG---AHVVAFTTSEAKREA-AKALGAD---EVVNSRNADEM---AAHLKSFDFILN 99 (168)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESSGGGHHH-HHHHTCS---EEEETTCHHHH---HTTTTCEEEEEE
T ss_pred CCEEEEecc-chHHHHHHHHhhccc---ccchhhccchhHHHH-HhccCCc---EEEECchhhHH---HHhcCCCceeee
Confidence 578999985 889999999999999 788888887665443 3333322 23455554322 222347999999
Q ss_pred cccc
Q 022280 83 CAAL 86 (300)
Q Consensus 83 ~a~~ 86 (300)
+.+.
T Consensus 100 ~~g~ 103 (168)
T d1uufa2 100 TVAA 103 (168)
T ss_dssp CCSS
T ss_pred eeec
Confidence 9763
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.80 E-value=0.00058 Score=50.49 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=33.9
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL 47 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~ 47 (300)
|||.|.| .|.+|+.+++.|.++| ++|++.+|+++..+...
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g---~~V~~~d~~~~~~~~a~ 40 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRG---HYLIGVSRQQSTCEKAV 40 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHH
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCC---CEEEEEECCchHHHHHH
Confidence 6899998 6999999999999999 89999999865555443
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.00078 Score=49.97 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=50.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+.+|+|.|+ |.+|...++.+...| .+|+++++++++.+...+ ++.. ...|..+...+.. +..++.|+++.
T Consensus 28 g~~vlI~Ga-G~vG~~a~q~ak~~G---~~vi~~~~~~~k~~~a~~-lGa~---~~i~~~~~~~~~~--~~~~~~d~vi~ 97 (168)
T d1piwa2 28 GKKVGIVGL-GGIGSMGTLISKAMG---AETYVISRSSRKREDAMK-MGAD---HYIATLEEGDWGE--KYFDTFDLIVV 97 (168)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHT---CEEEEEESSSTTHHHHHH-HTCS---EEEEGGGTSCHHH--HSCSCEEEEEE
T ss_pred CCEEEEECC-CCcchhHHHHhhhcc---ccccccccchhHHHHhhc-cCCc---EEeeccchHHHHH--hhhcccceEEE
Confidence 578999986 999999999998999 899999998777665443 3321 1223332222222 22247899999
Q ss_pred cccc
Q 022280 83 CAAL 86 (300)
Q Consensus 83 ~a~~ 86 (300)
+.+.
T Consensus 98 ~~~~ 101 (168)
T d1piwa2 98 CASS 101 (168)
T ss_dssp CCSC
T ss_pred EecC
Confidence 8764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.75 E-value=0.00099 Score=49.72 Aligned_cols=77 Identities=16% Similarity=0.026 Sum_probs=51.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+|+|.|+ |.+|...++.+...|. .+|+++++++++.+.. .+++. . ...|..+.+..+.+.+.. .++|+|
T Consensus 28 g~~VlI~Ga-G~vGl~~~q~ak~~Ga--~~Vi~~d~~~~r~~~a-~~lGa--~-~~i~~~~~~~~~~v~~~t~g~G~D~v 100 (174)
T d1jqba2 28 GSSVVVIGI-GAVGLMGIAGAKLRGA--GRIIGVGSRPICVEAA-KFYGA--T-DILNYKNGHIEDQVMKLTNGKGVDRV 100 (174)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHTTTC--SCEEEECCCHHHHHHH-HHHTC--S-EEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred CCEEEEEcC-Ccchhhhhhhhhcccc--cccccccchhhhHHHH-HhhCc--c-ccccccchhHHHHHHHHhhccCcceE
Confidence 568999985 9999999999999994 2688888875544433 33332 1 234555544445454443 259999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|.++|.
T Consensus 101 id~~g~ 106 (174)
T d1jqba2 101 IMAGGG 106 (174)
T ss_dssp EECSSC
T ss_pred EEccCC
Confidence 999873
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.75 E-value=0.00081 Score=49.00 Aligned_cols=65 Identities=14% Similarity=0.271 Sum_probs=48.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|||.+.| +|-+|+++++.|++.| +++++..|+.++...+.++++-.. . .+..++.+ +.|+||-+
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~---~~i~v~~r~~~~~~~l~~~~g~~~-------~--~~~~~~~~---~~dvIila 64 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTP---HELIISGSSLERSKEIAEQLALPY-------A--MSHQDLID---QVDLVILG 64 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSS---CEEEEECSSHHHHHHHHHHHTCCB-------C--SSHHHHHH---TCSEEEEC
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCC---CeEEEEcChHHhHHhhccccceee-------e--chhhhhhh---ccceeeee
Confidence 6899998 9999999999999999 899999998777666655432211 1 12455566 89999976
Q ss_pred c
Q 022280 84 A 84 (300)
Q Consensus 84 a 84 (300)
.
T Consensus 65 v 65 (152)
T d2ahra2 65 I 65 (152)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.72 E-value=0.00089 Score=49.32 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=47.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
|++|.+.| .|.+|+.+++.|+++| |+|.+.+|++++.+.+.... . . . .....+... ..|+|+-
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g---~~v~~~d~~~~~~~~~~~~~-~--~--~-----~~~~~e~~~---~~diii~ 63 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAG---YLLNVFDLVQSAVDGLVAAG-A--S--A-----ARSARDAVQ---GADVVIS 63 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTT---CEEEEECSSHHHHHHHHHTT-C--E--E-----CSSHHHHHT---SCSEEEE
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCC---CeEEEEECchhhhhhhhhhh-c--c--c-----cchhhhhcc---ccCeeee
Confidence 67899998 9999999999999999 99999999876665554331 1 0 1 112334444 7898888
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
|..
T Consensus 64 ~v~ 66 (162)
T d3cuma2 64 MLP 66 (162)
T ss_dssp CCS
T ss_pred ccc
Confidence 753
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.70 E-value=0.0029 Score=45.85 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=45.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|||.|.| .|.+|+.+++.|+++| ++|++.++++++....... ... +. ++..++.+ ..|.||-+
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g---~~v~~~~~~~~~~~~~~~~---~~~-----~~--~~~~e~~~---~~diIi~~ 63 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRG---VEVVTSLEGRSPSTIERAR---TVG-----VT--ETSEEDVY---SCPVVISA 63 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTT---CEEEECCTTCCHHHHHHHH---HHT-----CE--ECCHHHHH---TSSEEEEC
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCC---CeEEEEcCchhHHHHHhhh---ccc-----cc--ccHHHHHh---hcCeEEEE
Confidence 6899997 8999999999999999 8899888876655443322 111 11 11344555 89999987
Q ss_pred c
Q 022280 84 A 84 (300)
Q Consensus 84 a 84 (300)
.
T Consensus 64 v 64 (152)
T d1i36a2 64 V 64 (152)
T ss_dssp S
T ss_pred e
Confidence 4
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.70 E-value=0.0031 Score=45.18 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=68.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhh----hhhc--CCCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL----LLDA--LPHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~----~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
.||.|+|+ |.+|+.++-.|+.+|.- .++++.+.+++.... +.+. +......... .+. + .+.+.
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~-~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~---~----~~~da 70 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIA-REIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDP---E----ICRDA 70 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCC-SEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCG---G----GGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCC-cEEEEEEeccccchhHHHHHHhccccCCCceeecC--CCH---H----HhhCC
Confidence 47999996 99999999999999853 478888877543322 1111 1122221111 121 1 12289
Q ss_pred CEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEee
Q 022280 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLS 127 (300)
Q Consensus 78 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~S 127 (300)
|+||-+||..... .....+.+..|..-. ..+++.+.+.+.+.++.+-
T Consensus 71 DvVVitaG~~~~~--g~~R~dl~~~N~~i~-~~i~~~i~~~~p~ai~ivv 117 (143)
T d1llda1 71 DMVVITAGPRQKP--GQSRLELVGATVNIL-KAIMPNLVKVAPNAIYMLI 117 (143)
T ss_dssp SEEEECCCCCCCT--TCCHHHHHHHHHHHH-HHHHHHHHHHCTTSEEEEC
T ss_pred cEEEEecccccCC--CCchhhhhhhhHHHH-HHHHHHHHhhCCCeEEEEe
Confidence 9999999975432 123456777887665 3788888887775554443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.70 E-value=0.0014 Score=48.29 Aligned_cols=75 Identities=21% Similarity=0.211 Sum_probs=51.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+.+|+|.|+ |.+|...++.+...| .+|+++++++++.+.. .+++. . ...|..+.+..+.+.+...+.+.+|-
T Consensus 28 g~~VlV~Ga-G~vG~~~~~~ak~~G---~~Vi~~~~~~~~~~~a-~~~Ga--~-~~i~~~~~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 28 GQWVAISGI-GGLGHVAVQYARAMG---LHVAAIDIDDAKLELA-RKLGA--S-LTVNARQEDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCHHHHHHH-HHTTC--S-EEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCEEEEeec-cccHHHHHHHHHHcC---CccceecchhhHHHhh-hccCc--c-ccccccchhHHHHHHHhhcCCccccc
Confidence 578999885 999999999999999 8999999886655443 33332 2 23456666555655554445666666
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+++
T Consensus 100 ~~~ 102 (166)
T d1llua2 100 TAV 102 (166)
T ss_dssp CCS
T ss_pred ccc
Confidence 544
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.69 E-value=0.00033 Score=53.17 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHHhcC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVALKFG 75 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (300)
|.|+||.|.| +|-.|++++..|.+.| ++|.+..|+++..+.+...- -+.+. +.-++.-..+++++++
T Consensus 5 ~~m~KI~ViG-aG~wGtAlA~~La~~g---~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~-l~~~i~~t~~l~~a~~--- 76 (189)
T d1n1ea2 5 LYLNKAVVFG-SGAFGTALAMVLSKKC---REVCVWHMNEEEVRLVNEKRENVLFLKGVQ-LASNITFTSDVEKAYN--- 76 (189)
T ss_dssp CCEEEEEEEC-CSHHHHHHHHHHHTTE---EEEEEECSCHHHHHHHHHHTBCTTTSTTCB-CCTTEEEESCHHHHHT---
T ss_pred ceeceEEEEC-CCHHHHHHHHHHHHcC---CeEEEEEecHHHHHHHhhcccccccccccc-cccccccchhhhhccC---
Confidence 4567899999 8899999999999999 88999898866555443211 01111 0111111223566665
Q ss_pred CCCEEEEcc
Q 022280 76 QPDVVVNCA 84 (300)
Q Consensus 76 ~~d~vih~a 84 (300)
..|+||.+.
T Consensus 77 ~ad~iiiav 85 (189)
T d1n1ea2 77 GAEIILFVI 85 (189)
T ss_dssp TCSCEEECS
T ss_pred CCCEEEEcC
Confidence 789998864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.64 E-value=0.0012 Score=49.34 Aligned_cols=75 Identities=16% Similarity=0.006 Sum_probs=48.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC-----CCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL-----PHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
.|+|.|.| +|-+|..++..|.++| ++|.+.+|+++..+.+.... .+.............+..+.++ ..
T Consensus 1 sk~iaIiG-aG~~G~~~A~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~a 73 (184)
T d1bg6a2 1 SKTYAVLG-LGNGGHAFAAYLALKG---QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK---DA 73 (184)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT---TC
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc---CC
Confidence 37899999 5999999999999999 89999999866555443321 0111111111111112455555 89
Q ss_pred CEEEEcc
Q 022280 78 DVVVNCA 84 (300)
Q Consensus 78 d~vih~a 84 (300)
|+||.+.
T Consensus 74 D~iii~v 80 (184)
T d1bg6a2 74 DVILIVV 80 (184)
T ss_dssp SEEEECS
T ss_pred CEEEEEE
Confidence 9999974
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.62 E-value=0.0014 Score=48.90 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=49.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc-CCCCEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF-GQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~d~vi 81 (300)
+.+|+|.|+ |.+|...++.+...|. ..|+++++++++.+ +.++++.. ...|..+.+..+++.+.. +++|+||
T Consensus 29 g~~VlI~G~-G~iG~~~~~~ak~~g~--~~v~~~~~~~~k~~-~a~~~Ga~---~~i~~~~~~~~~~i~~~t~gg~D~vi 101 (174)
T d1f8fa2 29 ASSFVTWGA-GAVGLSALLAAKVCGA--SIIIAVDIVESRLE-LAKQLGAT---HVINSKTQDPVAAIKEITDGGVNFAL 101 (174)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHHHTC--SEEEEEESCHHHHH-HHHHHTCS---EEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred CCEEEEeCC-CHHHhhhhhccccccc--ceeeeeccHHHHHH-HHHHcCCe---EEEeCCCcCHHHHHHHHcCCCCcEEE
Confidence 568999996 9999999999999993 23455555544433 33343321 234556655445444432 3699999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.|.|.
T Consensus 102 d~~G~ 106 (174)
T d1f8fa2 102 ESTGS 106 (174)
T ss_dssp ECSCC
T ss_pred EcCCc
Confidence 99873
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.60 E-value=0.0013 Score=48.69 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=47.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+++|+|.| +|+.+++++..|.+.|. -+|.++.|+.++...+.+.++. ...+-.+ ....|.|||
T Consensus 17 ~~~vlIlG-aGGaarai~~aL~~~g~--~~I~I~nR~~~ka~~L~~~~~~----~~~~~~~----------~~~~DliIN 79 (167)
T d1npya1 17 NAKVIVHG-SGGMAKAVVAAFKNSGF--EKLKIYARNVKTGQYLAALYGY----AYINSLE----------NQQADILVN 79 (167)
T ss_dssp TSCEEEEC-SSTTHHHHHHHHHHTTC--CCEEEECSCHHHHHHHHHHHTC----EEESCCT----------TCCCSEEEE
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCC--CEEEEecccHHHHHHHHHhhhh----hhhhccc----------ccchhhhee
Confidence 57899999 59999999999999994 2688889987777766654322 1111111 127899999
Q ss_pred cccc
Q 022280 83 CAAL 86 (300)
Q Consensus 83 ~a~~ 86 (300)
+-..
T Consensus 80 aTpi 83 (167)
T d1npya1 80 VTSI 83 (167)
T ss_dssp CSST
T ss_pred cccc
Confidence 7543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.59 E-value=0.0012 Score=49.56 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=50.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCCchhhhhhcCCCceeEEEeecCCchh---HHHHHHhc--CC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSG---FDAVALKF--GQ 76 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~~~--~~ 76 (300)
+.+|||+|+ |.+|...++.+...| . +|+++++++++.+. ..+++.. ...|..+.+. .+.+.+.. .+
T Consensus 29 G~~VlV~Ga-G~iG~~~~~~ak~~G---a~~Vi~~~~~~~~~~~-a~~lGa~---~vi~~~~~~~~~~~~~i~~~~~~~g 100 (182)
T d1vj0a2 29 GKTVVIQGA-GPLGLFGVVIARSLG---AENVIVIAGSPNRLKL-AEEIGAD---LTLNRRETSVEERRKAIMDITHGRG 100 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---BSEEEEEESCHHHHHH-HHHTTCS---EEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred CCEEEEECC-Cccchhheecccccc---cccccccccccccccc-cccccce---EEEeccccchHHHHHHHHHhhCCCC
Confidence 578999996 899999999999999 6 68888888665543 3444332 2335444331 22233322 25
Q ss_pred CCEEEEcccc
Q 022280 77 PDVVVNCAAL 86 (300)
Q Consensus 77 ~d~vih~a~~ 86 (300)
+|+||.+.|.
T Consensus 101 ~Dvvid~vG~ 110 (182)
T d1vj0a2 101 ADFILEATGD 110 (182)
T ss_dssp EEEEEECSSC
T ss_pred ceEEeecCCc
Confidence 8999999873
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.44 E-value=0.00082 Score=49.88 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=34.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL 47 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~ 47 (300)
||+|+|.| .|.+|..+++.|.+.|.. .+|++.+++++..+...
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~-~~I~~~D~~~~~~~~a~ 43 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFK-GKIYGYDINPESISKAV 43 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCC-SEEEEECSCHHHHHHHH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCC-eEEEEEECChHHHHHHH
Confidence 56899998 799999999999999955 57888888865554443
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.35 E-value=0.0089 Score=42.18 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=50.3
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEEEE
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVVVN 82 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~vih 82 (300)
||.|.|++|-+|+.+++.+.+... +++.+.....+....+... ... +..|++.|+.+.+.++.. .+.-.|+-
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~--~~l~~~~d~~~~~~~~~~~---~~D-vvIDFS~p~~~~~~~~~~~~~~~~~ViG 74 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADD--LTLSAELDAGDPLSLLTDG---NTE-VVIDFTHPDVVMGNLEFLIDNGIHAVVG 74 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTT--SEEEEEECTTCCTHHHHTT---TCS-EEEECCCTTTHHHHHHHHHHTTCEEEEC
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC--CEEEEEEecCCchhhhccc---cCC-EEEEcccHHHHHHHHHHHHhcCCCEEEe
Confidence 689999999999999998877543 7777665544444433322 233 678999999765555421 26667775
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
.-|
T Consensus 75 TTG 77 (135)
T d1yl7a1 75 TTG 77 (135)
T ss_dssp CCC
T ss_pred ccc
Confidence 444
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.32 E-value=0.0027 Score=47.90 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=48.2
Q ss_pred CCeEEE-EcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh---hcCCCceeEEEeecCCchh----HHHHHHh-
Q 022280 3 KKRVLV-VGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL---DALPHSFVFFDVDLKSGSG----FDAVALK- 73 (300)
Q Consensus 3 ~~~ilI-tGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~---~~~~~~~~~~~~D~~~~~~----~~~~~~~- 73 (300)
+.+++| +||+|.+|...++.....| .+|+++.|+++..+... .+++.... +..|-.+... +.+....
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~G---a~vI~~v~~~~~~~~~~~~~~~lGad~v-i~~~~~~~~~~~~~v~~~~~~~ 104 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLN---FNSISVIRDRPNLDEVVASLKELGATQV-ITEDQNNSREFGPTIKEWIKQS 104 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHT---CEEEEEECCCTTHHHHHHHHHHHTCSEE-EEHHHHHCGGGHHHHHHHHHHH
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcC---CeEEEEEecccccchHHhhhhhccccEE-EeccccchhHHHHHHHHHHhhc
Confidence 456677 5999999999999999999 89999988866544322 23332222 2211111111 2222222
Q ss_pred cCCCCEEEEccc
Q 022280 74 FGQPDVVVNCAA 85 (300)
Q Consensus 74 ~~~~d~vih~a~ 85 (300)
-+++|+||++.|
T Consensus 105 g~~vdvv~D~vg 116 (189)
T d1gu7a2 105 GGEAKLALNCVG 116 (189)
T ss_dssp TCCEEEEEESSC
T ss_pred cCCceEEEECCC
Confidence 236999999876
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.26 E-value=0.0005 Score=50.31 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=61.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccC----CCceeeecCCCCCc--hhhhh----hcCCCceeEEEeecCCchhHHHHHH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEG----KPYDVAATHHSTPL--PQLLL----DALPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~----~~~~v~~~~r~~~~--~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
.+||.|+||+|.+|++++-.|++.+- ...+++..+.+... ...+. ........ .....+. ..+.++
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~--~~~~~~ 78 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLK--DVIATDK--EEIAFK 78 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEE--EEEEESC--HHHHTT
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccccc--ccccCcc--cccccC
Confidence 47999999999999999999887542 11344544443221 11111 11111111 1112221 223333
Q ss_pred hcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhc-cCC-eEEEee
Q 022280 73 KFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN-KEN-LLIHLS 127 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~-~~~-~~v~~S 127 (300)
+.|+||-+||...... ....+.+..|..-. +.+.+.+.+. +.. .++.+|
T Consensus 79 ---~~dvVVitag~~~~~g--~sr~dll~~N~~i~-k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 79 ---DLDVAILVGSMPRRDG--MERKDLLKANVKIF-KCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp ---TCSEEEECCSCCCCTT--CCTTTTHHHHHHHH-HHHHHHHHHHSCTTCEEEECS
T ss_pred ---CceEEEEecccCCCCC--CchhHHHHHhHHHH-HHHHHHHHhhCCCceEEEEec
Confidence 8999999999754322 12334566676554 3677776664 332 344444
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.23 E-value=0.0042 Score=45.15 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=21.2
Q ss_pred eEEEEcCCccchHHHHHhhhhcc
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIE 27 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g 27 (300)
+|.|.||||++|+.|++.|.++.
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~ 25 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEEST 25 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCC
T ss_pred EEEEECCCcHHHHHHHHHHHcCC
Confidence 79999999999999999988775
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0013 Score=49.93 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=35.1
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ 44 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~ 44 (300)
|+-++|.|.|| |.+|+.++..++..| ++|++.+++++..+
T Consensus 2 ~~IkkvaViGa-G~mG~~iA~~~a~~G---~~V~l~D~~~~~l~ 41 (192)
T d1f0ya2 2 IIVKHVTVIGG-GLMGAGIAQVAAATG---HTVVLVDQTEDILA 41 (192)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSCHHHHH
T ss_pred ceeEEEEEECc-CHHHHHHHHHHHhCC---CcEEEEECChHHHH
Confidence 56689999995 999999999999999 99999999866443
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0051 Score=45.41 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=49.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH-Hhc-CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA-LKF-GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~-~~~d~v 80 (300)
+.+|+|.|+ |.+|...++.+...|. .+|+++++++++.+. .++++.... +..+-.+.......+ ... .++|+|
T Consensus 27 gd~VlI~G~-G~iG~~~~~~a~~~G~--~~Vi~~d~~~~rl~~-a~~~Ga~~~-~~~~~~~~~~~~~~~~~~~g~g~Dvv 101 (171)
T d1pl8a2 27 GHKVLVCGA-GPIGMVTLLVAKAMGA--AQVVVTDLSATRLSK-AKEIGADLV-LQISKESPQEIARKVEGQLGCKPEVT 101 (171)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEESCHHHHHH-HHHTTCSEE-EECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCEEEEECC-CccHHHHHHHHHHcCC--ceEEeccCCHHHHHH-HHHhCCccc-ccccccccccccccccccCCCCceEE
Confidence 568999985 9999999999999993 278888888665543 334433221 222222222222222 222 268999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
|.+.|
T Consensus 102 id~~G 106 (171)
T d1pl8a2 102 IECTG 106 (171)
T ss_dssp EECSC
T ss_pred EeccC
Confidence 99987
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0037 Score=39.51 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=32.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP 43 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~ 43 (300)
||+|.|.| +|.+|+.++.+-..-| +++++.+..++..
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG---~~v~vldp~~~~p 37 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLG---IAVWPVGLDAEPA 37 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGT---EEEEEECTTSCGG
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcC---CEEEEEcCCCCCc
Confidence 57999999 8999999999999999 9999988765543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.14 E-value=0.0072 Score=44.75 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=49.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHhc--CCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALKF--GQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~~d~ 79 (300)
+.+|+|.|+ |.+|...++.+...|. .+|+++++++++.+.. .+++.. ...|..+ .+.+.+..+.. +++|+
T Consensus 29 GdtVlV~Ga-GG~G~~~~~~~~~~g~--~~Vi~~~~~~~k~~~a-~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~G~D~ 101 (176)
T d2jhfa2 29 GSTCAVFGL-GGVGLSVIMGCKAAGA--ARIIGVDINKDKFAKA-KEVGAT---ECVNPQDYKKPIQEVLTEMSNGGVDF 101 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHH-HHTTCS---EEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCEEEEECC-CCcHHHHHHHHHHcCC--ceEEeecCcHHHHHHH-HHhCCe---eEEecCCchhHHHHHHHHHhcCCCCE
Confidence 568999998 5689999999999884 4788888876665533 333222 1223322 23344433332 47999
Q ss_pred EEEcccc
Q 022280 80 VVNCAAL 86 (300)
Q Consensus 80 vih~a~~ 86 (300)
+|.+.|.
T Consensus 102 vid~~G~ 108 (176)
T d2jhfa2 102 SFEVIGR 108 (176)
T ss_dssp EEECSCC
T ss_pred EEecCCc
Confidence 9999874
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.13 E-value=0.0017 Score=48.46 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=37.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL 50 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~ 50 (300)
|+|-|.| .|.+|+.+++.|++.| ++|++.+|++++...+.+..
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G---~~V~~~dr~~~~~~~l~~~~ 44 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKG---FKVAVFNRTYSKSEEFMKAN 44 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT---CCEEEECSSHHHHHHHHHHT
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHcC
Confidence 6799998 9999999999999999 89999999988777776553
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.10 E-value=0.021 Score=37.62 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=44.9
Q ss_pred CCeEEEEcCCccch-HHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVVGGTGYLG-QHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilItGatG~iG-~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.++|.+.| -|.+| ++|++.|.++| ++|.+.++...+....+... ++.+..++ +++ ...++|.||
T Consensus 8 ~~~ihfiG-igG~GMs~LA~~L~~~G---~~VsGSD~~~~~~~~~L~~~--Gi~v~~g~--~~~-------~i~~~d~vV 72 (96)
T d1p3da1 8 VQQIHFIG-IGGAGMSGIAEILLNEG---YQISGSDIADGVVTQRLAQA--GAKIYIGH--AEE-------HIEGASVVV 72 (96)
T ss_dssp CCEEEEET-TTSTTHHHHHHHHHHHT---CEEEEEESCCSHHHHHHHHT--TCEEEESC--CGG-------GGTTCSEEE
T ss_pred CCEEEEEE-ECHHHHHHHHHHHHhCC---CEEEEEeCCCChhhhHHHHC--CCeEEECC--ccc-------cCCCCCEEE
Confidence 57899998 44555 78899999999 99999998755443333332 33322221 121 112789999
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
-..++
T Consensus 73 ~S~AI 77 (96)
T d1p3da1 73 VSSAI 77 (96)
T ss_dssp ECTTS
T ss_pred ECCCc
Confidence 88775
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.09 E-value=0.0029 Score=44.40 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=26.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeec
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT 36 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~ 36 (300)
|||.|.|++|-.|+.+++.+.++| +++++.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~---~~l~~~ 30 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG---HELVLK 30 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC---CeEEEE
Confidence 689999999999999999999998 666644
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=96.07 E-value=0.002 Score=47.80 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
|+++||.|.| +|.+|+..++.|.+... ++++++..+
T Consensus 1 M~kirvgiiG-~G~ig~~~~~~l~~~~~--~elvav~~~ 36 (170)
T d1f06a1 1 MTNIRVAIVG-YGNLGRSVEKLIAKQPD--MDLVGIFSR 36 (170)
T ss_dssp CCCEEEEEEC-CSHHHHHHHHHHTTCSS--EEEEEEEES
T ss_pred CCcceEEEEC-ChHHHHHHHHHHHhCCC--cEEEEEEec
Confidence 7778999999 79999999999987543 777765544
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.03 E-value=0.0064 Score=44.97 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=47.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHhc--CCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALKF--GQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~~d~ 79 (300)
+.+|+|.|+ |.+|...++.+...|. ..|+++++++++. ++..+++... ..|..+ .+.+....+.. +++|+
T Consensus 29 G~tVlI~Ga-GGvG~~aiq~ak~~G~--~~vi~~~~~~~k~-~~ak~lGa~~---~i~~~~~~~~~~~~~~~~~~~g~D~ 101 (176)
T d2fzwa2 29 GSVCAVFGL-GGVGLAVIMGCKVAGA--SRIIGVDINKDKF-ARAKEFGATE---CINPQDFSKPIQEVLIEMTDGGVDY 101 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTC--SEEEEECSCGGGH-HHHHHHTCSE---EECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCEEEEecc-hhHHHHHHHHHHHHhc--CceEEEcccHHHH-HHHHHhCCcE---EEeCCchhhHHHHHHHHHcCCCCcE
Confidence 568999997 5789999999999994 3466666654443 3444443221 223322 23344444332 37999
Q ss_pred EEEccc
Q 022280 80 VVNCAA 85 (300)
Q Consensus 80 vih~a~ 85 (300)
||.+.|
T Consensus 102 vid~~G 107 (176)
T d2fzwa2 102 SFECIG 107 (176)
T ss_dssp EEECSC
T ss_pred eeecCC
Confidence 999987
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.001 Score=48.95 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=28.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
.+||.|.|++|-+|+.+++.+.+... +++++...+
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~--~~lv~~~~~ 38 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEG--VQLGAALER 38 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTT--EECCCEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC--CEEEEEEec
Confidence 46899999999999999999988643 777665543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.93 E-value=0.0085 Score=43.85 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+.+|+|.| +|.+|...++.+...| .+|+++++++++..... +++. . ...|-.+.+....+.+...+.+.+|.
T Consensus 28 g~~vlv~G-~G~iG~~a~~~a~~~g---~~v~~~~~~~~r~~~~k-~~Ga--~-~~~~~~~~~~~~~~~~~~~~~~~~v~ 99 (168)
T d1rjwa2 28 GEWVAIYG-IGGLGHVAVQYAKAMG---LNVVAVDIGDEKLELAK-ELGA--D-LVVNPLKEDAAKFMKEKVGGVHAAVV 99 (168)
T ss_dssp TCEEEEEC-CSTTHHHHHHHHHHTT---CEEEEECSCHHHHHHHH-HTTC--S-EEECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCEEEEee-cccchhhhhHHHhcCC---CeEeccCCCHHHhhhhh-hcCc--c-eecccccchhhhhcccccCCCceEEe
Confidence 56899987 5899999999999999 88999998866655443 3322 2 23444444433333333345666666
Q ss_pred ccc
Q 022280 83 CAA 85 (300)
Q Consensus 83 ~a~ 85 (300)
+++
T Consensus 100 ~~~ 102 (168)
T d1rjwa2 100 TAV 102 (168)
T ss_dssp SSC
T ss_pred ecC
Confidence 654
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0055 Score=44.13 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=29.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
||+|.|.|+||-||....+-+.+.-.+ ++|.++.-.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~-f~v~~Lsa~ 36 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEH-FRVVALVAG 36 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTT-EEEEEEEES
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCC-cEEEEEEec
Confidence 678999999999999999988776444 788776543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.90 E-value=0.005 Score=43.14 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=49.8
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|+++|.| -|-+|+.+++.|. | .+|++...+++....+.. .++.++.+|.++++.++.+ .+.+.+.++-+
T Consensus 1 kHivI~G-~g~~g~~l~~~L~--~---~~i~vi~~d~~~~~~~~~---~~~~~i~Gd~~~~~~L~~a--~i~~A~~vi~~ 69 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLRELR--G---SEVFVLAEDENVRKKVLR---SGANFVHGDPTRVSDLEKA--NVRGARAVIVN 69 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTSC--G---GGEEEEESCTTHHHHHHH---TTCEEEESCTTSHHHHHHT--TCTTCSEEEEC
T ss_pred CEEEEEC-CCHHHHHHHHHHc--C---CCCEEEEcchHHHHHHHh---cCccccccccCCHHHHHHh--hhhcCcEEEEe
Confidence 5788888 5788999999995 4 446666777666555443 3567789999998766553 23478888876
Q ss_pred c
Q 022280 84 A 84 (300)
Q Consensus 84 a 84 (300)
.
T Consensus 70 ~ 70 (129)
T d2fy8a1 70 L 70 (129)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.85 E-value=0.0074 Score=45.02 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=46.6
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+.+++|.|.| .|-||+.+++.|..-| .+|++.+|++.... ..-.++++++++ ..|+|
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g---~~v~~~d~~~~~~~----------------~~~~~~l~ell~---~sDiv 96 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALG---AQVRGFSRTPKEGP----------------WRFTNSLEEALR---EARAA 96 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTT---CEEEEECSSCCCSS----------------SCCBSCSHHHHT---TCSEE
T ss_pred ccCceEEEec-cccccccceeeeeccc---cccccccccccccc----------------eeeeechhhhhh---ccchh
Confidence 3578999999 8889999999999999 89999988743211 111224666776 89999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
+.+..
T Consensus 97 ~~~~p 101 (181)
T d1qp8a1 97 VCALP 101 (181)
T ss_dssp EECCC
T ss_pred hcccc
Confidence 98764
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.78 E-value=0.007 Score=44.89 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=51.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
..+|-|.| .|.+|+.+++.|++.| ++|++.+|++++...+.+....... ..+ ... +....+....+|.++-
T Consensus 2 ~~nIg~IG-lG~MG~~mA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~~~-~~~-a~~---~~~~~~~~~~~~~ii~ 72 (176)
T d2pgda2 2 QADIALIG-LAVMGQNLILNMNDHG---FVVCAFNRTVSKVDDFLANEAKGTK-VLG-AHS---LEEMVSKLKKPRRIIL 72 (176)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTT---CCEEEECSSTHHHHHHHHTTTTTSS-CEE-CSS---HHHHHHHBCSSCEEEE
T ss_pred CCcEEEEe-EhHHHHHHHHHHHHCC---CeEEEEcCCHHHHHHHHHhcccccc-ccc-hhh---hhhhhhhhcccceEEE
Confidence 46799999 7999999999999999 8999999998887777654211111 011 122 3444454557888888
Q ss_pred cc
Q 022280 83 CA 84 (300)
Q Consensus 83 ~a 84 (300)
+.
T Consensus 73 ~~ 74 (176)
T d2pgda2 73 LV 74 (176)
T ss_dssp CS
T ss_pred ec
Confidence 74
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=95.78 E-value=0.0024 Score=46.36 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=37.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL 50 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~ 50 (300)
|+|.+.| +|-+|+++++.|++.|. ++|++.+|++++.+.+.+++
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~--~~i~v~~r~~~~~~~l~~~~ 44 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGG--YRIYIANRGAEKRERLEKEL 44 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCS--CEEEEECSSHHHHHHHHHHT
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCC--CcEEEEeCChhHHHHhhhhc
Confidence 6899998 69999999999999875 78999999987777776654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.71 E-value=0.018 Score=43.37 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~ 79 (300)
.+.+|+|.|+ |.+|...++.+...|. .+|+++++++++.+ +..+++. . +..|-.+.+..+.+.+.. .++|+
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga--~~Vi~~d~~~~rl~-~a~~~Ga--~-~~~~~~~~~~~~~i~~~t~g~g~D~ 97 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGA--AVVIVGDLNPARLA-HAKAQGF--E-IADLSLDTPLHEQIAALLGEPEVDC 97 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEESCHHHHH-HHHHTTC--E-EEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcc--cceeeecccchhhH-hhhhccc--c-EEEeCCCcCHHHHHHHHhCCCCcEE
Confidence 3578999985 8999888888877784 47888887755544 3334332 2 222333333333333322 36999
Q ss_pred EEEcccc
Q 022280 80 VVNCAAL 86 (300)
Q Consensus 80 vih~a~~ 86 (300)
+|.+.|.
T Consensus 98 vid~vG~ 104 (195)
T d1kola2 98 AVDAVGF 104 (195)
T ss_dssp EEECCCT
T ss_pred EEECccc
Confidence 9999884
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.016 Score=40.02 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=56.2
Q ss_pred CCeEEEEcCCc----------cchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHH
Q 022280 3 KKRVLVVGGTG----------YLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 3 ~~~ilItGatG----------~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
.++|||.|+.. +-+.+.+++|.+.| |+++....+++....-.+ ....+..+-...+++.++++
T Consensus 7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g---~~~iliN~NP~TVstd~d----~aD~lYfePlt~e~v~~Ii~ 79 (127)
T d1a9xa3 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEG---YRVINVNSNPATIMTDPE----MADATYIEPIHWEVVRKIIE 79 (127)
T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHT---CEEEEECSCTTCGGGCGG----GSSEEECSCCCHHHHHHHHH
T ss_pred CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcC---CeEEEecCchHhhhcChh----hcceeeeecCCHHHHHHHHH
Confidence 47899999843 56788999999999 999998888776543222 12225666667778888888
Q ss_pred hcCCCCEEEEccc
Q 022280 73 KFGQPDVVVNCAA 85 (300)
Q Consensus 73 ~~~~~d~vih~a~ 85 (300)
+. +||.|+-..|
T Consensus 80 ~E-~pd~il~~~G 91 (127)
T d1a9xa3 80 KE-RPDAVLPTMG 91 (127)
T ss_dssp HH-CCSEEECSSS
T ss_pred Hh-CcCCeEEEee
Confidence 87 9999987655
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.66 E-value=0.017 Score=42.71 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=49.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCC-chhHHHHHHh--cCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS-GSGFDAVALK--FGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~--~~~~d~ 79 (300)
+.+|+|.| .|.||...++.+...|. ..|++.+.++++. ++.++++... ..|... .+......+. -+++|+
T Consensus 29 G~~VlV~G-~G~iGl~a~~~ak~~Ga--~~Vi~~d~~~~r~-~~a~~~Ga~~---~i~~~~~~~~~~~~~~~~~~~G~d~ 101 (174)
T d1e3ia2 29 GSTCAVFG-LGCVGLSAIIGCKIAGA--SRIIAIDINGEKF-PKAKALGATD---CLNPRELDKPVQDVITELTAGGVDY 101 (174)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC--SEEEEECSCGGGH-HHHHHTTCSE---EECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCEEEEEC-CChHHHHHHHHHHHhCC--ceeeeeccchHHH-HHHHHhCCCc---ccCCccchhhhhhhHhhhhcCCCcE
Confidence 57899997 59999999999999994 3577777776554 3444443322 223222 2223333322 248999
Q ss_pred EEEcccc
Q 022280 80 VVNCAAL 86 (300)
Q Consensus 80 vih~a~~ 86 (300)
||.|.|.
T Consensus 102 vie~~G~ 108 (174)
T d1e3ia2 102 SLDCAGT 108 (174)
T ss_dssp EEESSCC
T ss_pred EEEeccc
Confidence 9999873
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.66 E-value=0.016 Score=42.90 Aligned_cols=77 Identities=10% Similarity=0.047 Sum_probs=50.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchh-HHHHHH--hcCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSG-FDAVAL--KFGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~--~~~~~d~ 79 (300)
+.+|+|.| .|.+|...++.+...|. .+|+++++++++.+. ..+++.. ...|..+.+. .....+ .-.++|+
T Consensus 30 g~tVlI~G-~GgvGl~ai~~ak~~G~--~~Vi~vd~~~~kl~~-Ak~~GA~---~~in~~~~~~~~~~~~~~~~g~G~d~ 102 (176)
T d1d1ta2 30 GSTCVVFG-LGGVGLSVIMGCKSAGA--SRIIGIDLNKDKFEK-AMAVGAT---ECISPKDSTKPISEVLSEMTGNNVGY 102 (176)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHH-HHHHTCS---EEECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred CCEEEEEC-CCchhHHHHHHHHHcCC--ceEEEecCcHHHHHH-HHhcCCc---EEECccccchHHHHHHHHhccccceE
Confidence 56899998 59999999999999994 479999988776553 3333332 2223333332 222222 1237999
Q ss_pred EEEcccc
Q 022280 80 VVNCAAL 86 (300)
Q Consensus 80 vih~a~~ 86 (300)
+|.+.+.
T Consensus 103 vi~~~g~ 109 (176)
T d1d1ta2 103 TFEVIGH 109 (176)
T ss_dssp EEECSCC
T ss_pred EEEeCCc
Confidence 9999773
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.63 E-value=0.0086 Score=44.18 Aligned_cols=76 Identities=21% Similarity=0.111 Sum_probs=48.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhc--CCCCEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKF--GQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~d~v 80 (300)
+.+|+|.|+ |.+|...++.+...|. ..|+++++++++..... +++.. ...|.. .+.++...+.. .++|+|
T Consensus 33 g~~vli~Ga-G~vG~~~~~~a~~~g~--~~vv~~~~~~~k~~~~~-~~ga~---~~i~~~-~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 33 GAYVAIVGV-GGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAE-RLGAD---HVVDAR-RDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHH-HTTCS---EEEETT-SCHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEeCC-ChHHHHHHHHHHhhcC--cccccccchhHHHHHHh-hcccc---eeecCc-ccHHHHHHHhhCCCCceEE
Confidence 568999885 9999999999988884 35666777655444333 33221 123433 23455555433 269999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
|.++|.
T Consensus 105 id~~g~ 110 (172)
T d1h2ba2 105 MDFVGS 110 (172)
T ss_dssp EESSCC
T ss_pred EEecCc
Confidence 999873
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=95.59 E-value=0.0073 Score=43.42 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=29.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+|+|.|.|+||-||....+-+.+.-.+ ++|.++.-.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~-f~v~~lsa~ 37 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDR-YQVIALTAN 37 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGG-EEEEEEEES
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCC-cEEEEEEeC
Confidence 689999999999999999988775433 788776544
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.56 E-value=0.00044 Score=51.90 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=34.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA 49 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~ 49 (300)
.+++|+|.| +|+.+++++-.|.+.| +|+++.|+.++.+.+.+.
T Consensus 17 ~~k~vlIlG-aGG~arai~~aL~~~~----~i~I~nR~~~ka~~l~~~ 59 (177)
T d1nvta1 17 KDKNIVIYG-AGGAARAVAFELAKDN----NIIIANRTVEKAEALAKE 59 (177)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHTSSS----EEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEEC-CcHHHHHHHHHHcccc----ceeeehhhhhHHHHHHHH
Confidence 578999999 6789999999997765 789999997776665543
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.035 Score=37.84 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCc----------cchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHH
Q 022280 2 SKKRVLVVGGTG----------YLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 2 ~~~~ilItGatG----------~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (300)
..++|||.|+.. +-+.+.+++|.+.| ++++....+++....-. +....+..+-...+.+..++
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g---~~~IliN~NPeTVstd~----d~aD~lYfeplt~e~v~~Ii 75 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG---YETIMVNCNPETVSTDY----DTSDRLYFEPVTLEDVLEIV 75 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTT---CEEEEECCCTTSSTTST----TSSSEEECCCCSHHHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcC---CeEEEEecChhhhhcCh----hhcCceEEccCCHHHHHHHH
Confidence 357999999753 66789999999999 99998888876554221 12223555556667788888
Q ss_pred HhcCCCCEEEEccc
Q 022280 72 LKFGQPDVVVNCAA 85 (300)
Q Consensus 72 ~~~~~~d~vih~a~ 85 (300)
+.. +||.|+-..|
T Consensus 76 ~~E-~p~~ii~~~G 88 (121)
T d1a9xa4 76 RIE-KPKGVIVQYG 88 (121)
T ss_dssp HHH-CCSEEECSSS
T ss_pred HHh-CCCEEEeehh
Confidence 877 9999987655
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.47 E-value=0.012 Score=40.11 Aligned_cols=70 Identities=9% Similarity=0.100 Sum_probs=46.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCch-hhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLP-QLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
+.+++|||.| +|-+|.+-++.|++.| .+|++......+. ..+.+ ..++.+++.++.+.+ +.+.+.
T Consensus 10 l~~k~vlVvG-~G~va~~ka~~ll~~g---a~v~v~~~~~~~~~~~~~~--~~~i~~~~~~~~~~d--------l~~~~l 75 (113)
T d1pjqa1 10 LRDRDCLIVG-GGDVAERKARLLLEAG---ARLTVNALTFIPQFTVWAN--EGMLTLVEGPFDETL--------LDSCWL 75 (113)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHTT---BEEEEEESSCCHHHHHHHT--TTSCEEEESSCCGGG--------GTTCSE
T ss_pred eCCCEEEEEC-CCHHHHHHHHHHHHCC---CeEEEEeccCChHHHHHHh--cCCceeeccCCCHHH--------hCCCcE
Confidence 3578999999 7889999999999999 7777776554332 22222 234555554443321 226788
Q ss_pred EEEcc
Q 022280 80 VVNCA 84 (300)
Q Consensus 80 vih~a 84 (300)
|+.+.
T Consensus 76 v~~at 80 (113)
T d1pjqa1 76 AIAAT 80 (113)
T ss_dssp EEECC
T ss_pred EeecC
Confidence 77653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.38 E-value=0.064 Score=34.55 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=45.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
|||.++|-.|-==+.|++.|+++| ++|.+.++...+....++.. ++.+..+ .+++.+ .++|.||..
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G---~~VsGSD~~~~~~t~~L~~~--Gi~i~~g--h~~~~i-------~~~d~vV~S 67 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNG---NDVYGSNIEETERTAYLRKL--GIPIFVP--HSADNW-------YDPDLVIKT 67 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEECSSCCHHHHHHHHT--TCCEESS--CCTTSC-------CCCSEEEEC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCC---CeEEEEeCCCChhHHHHHHC--CCeEEee--eccccc-------CCCCEEEEe
Confidence 788899844433348999999999 99999999865544444443 3443222 222211 278999998
Q ss_pred cccc
Q 022280 84 AALS 87 (300)
Q Consensus 84 a~~~ 87 (300)
.++.
T Consensus 68 sAI~ 71 (89)
T d1j6ua1 68 PAVR 71 (89)
T ss_dssp TTCC
T ss_pred cCcC
Confidence 7753
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.19 E-value=0.0074 Score=44.85 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=28.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
|-||.|-| .|.||+.++|.|.++.. ++|++....
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~d--ievVaInd~ 34 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPD--MKLVGVAKT 34 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTT--EEEEEEECS
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCC--CEEEEEECC
Confidence 45899998 89999999999998764 788776544
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.18 E-value=0.0091 Score=45.16 Aligned_cols=64 Identities=22% Similarity=0.117 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|.|.| .|-||+.+++.|..-| .+|++.++........ +....+++.++++ ..|+|+
T Consensus 42 ~gk~vgIiG-~G~IG~~va~~l~~fg---~~V~~~d~~~~~~~~~-------------~~~~~~~l~~~l~---~sDii~ 101 (197)
T d1j4aa1 42 RDQVVGVVG-TGHIGQVFMQIMEGFG---AKVITYDIFRNPELEK-------------KGYYVDSLDDLYK---QADVIS 101 (197)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSCCHHHHH-------------TTCBCSCHHHHHH---HCSEEE
T ss_pred cCCeEEEec-ccccchhHHHhHhhhc---ccccccCccccccccc-------------ceeeecccccccc---cccccc
Confidence 468999999 9999999999999999 8899887664322111 0112234667776 689887
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+..
T Consensus 102 ~~~p 105 (197)
T d1j4aa1 102 LHVP 105 (197)
T ss_dssp ECSC
T ss_pred ccCC
Confidence 7654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=94.94 E-value=0.026 Score=42.41 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.++++.|.| .|-||+.+++.|..-| .+|++.++.......... ++...++++++++ ..|+|+
T Consensus 48 ~gktvgIiG-~G~IG~~va~~l~~fg---~~v~~~d~~~~~~~~~~~-----------~~~~~~~l~~ll~---~sD~i~ 109 (193)
T d1mx3a1 48 RGETLGIIG-LGRVGQAVALRAKAFG---FNVLFYDPYLSDGVERAL-----------GLQRVSTLQDLLF---HSDCVT 109 (193)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEECTTSCTTHHHHH-----------TCEECSSHHHHHH---HCSEEE
T ss_pred eCceEEEec-cccccccceeeeeccc---cceeeccCcccccchhhh-----------ccccccchhhccc---cCCEEE
Confidence 578999998 9999999999999999 899988876443221110 1112234666776 678877
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.+...
T Consensus 110 ~~~pl 114 (193)
T d1mx3a1 110 LHCGL 114 (193)
T ss_dssp ECCCC
T ss_pred Eeecc
Confidence 76543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.93 E-value=0.043 Score=38.18 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=58.2
Q ss_pred CCCeEEEEcCC---ccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 2 SKKRVLVVGGT---GYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 2 ~~~~ilItGat---G~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
+.++|.|.||| +-.|..+.+.|.+.| . ++|+.+..+.+... +.. ..-++.+-. ..+|
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~-g~v~pVnP~~~~i~--------G~~-~y~sl~dlp---------~~vD 66 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-K-GKVYPVNIKEEEVQ--------GVK-AYKSVKDIP---------DEID 66 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCC-S-SEEEEECSSCSEET--------TEE-CBSSTTSCS---------SCCS
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcC-C-CcEEEeccCccccC--------CeE-eecchhhcC---------CCCc
Confidence 45799999998 999999999998765 2 67877654432211 111 223344421 1789
Q ss_pred EEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecc
Q 022280 79 VVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTD 129 (300)
Q Consensus 79 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (300)
.++-+.. ++.. ..+++.|.+.|++.++.+|+.
T Consensus 67 lvvi~vp----------~~~~---------~~~~~~~~~~g~~~~vi~s~G 98 (129)
T d2csua1 67 LAIIVVP----------KRFV---------KDTLIQCGEKGVKGVVIITAG 98 (129)
T ss_dssp EEEECSC----------HHHH---------HHHHHHHHHHTCCEEEECCCS
T ss_pred eEEEecC----------hHHh---------HHHHHHHHHcCCCEEEEeccc
Confidence 8887642 1111 378888888999888888773
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.92 E-value=0.018 Score=42.70 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=46.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc--hhhhhhcC-CCc--eeEEEeecCCchhHHHHHHhcCCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQLLLDAL-PHS--FVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~--~~~~~~~~-~~~--~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
|+|.|.| +|-.|.+++..|.+.| ++|.+..|+.++ ...+.... ... ......++.-.+++.+.++ ..|
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g---~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~ad 73 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNG---NEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE---NAE 73 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHC---CEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT---TCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHh---ccc
Confidence 7899999 7999999999999999 788888875332 22221110 000 0001112223344566665 889
Q ss_pred EEEEcc
Q 022280 79 VVVNCA 84 (300)
Q Consensus 79 ~vih~a 84 (300)
+||.+.
T Consensus 74 ~Ii~av 79 (180)
T d1txga2 74 VVLLGV 79 (180)
T ss_dssp EEEECS
T ss_pred hhhccc
Confidence 999864
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.80 E-value=0.039 Score=40.59 Aligned_cols=77 Identities=17% Similarity=0.081 Sum_probs=50.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCch-hHHHHHHhc--CCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS-GFDAVALKF--GQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~--~~~d~ 79 (300)
+.+|+|.|+ |.+|...++.+...|. .+|+++++++++.+.. ++++.. ...|..+.+ .+.+..+.. ++.|+
T Consensus 28 G~~VlV~Ga-GgvGl~a~~~ak~~G~--~~Vi~~d~~~~kl~~a-~~lGa~---~~i~~~~~d~~~~~~~~~~~~~G~d~ 100 (174)
T d1p0fa2 28 GSTCAVFGL-GGVGFSAIVGCKAAGA--SRIIGVGTHKDKFPKA-IELGAT---ECLNPKDYDKPIYEVICEKTNGGVDY 100 (174)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTC--SEEEEECSCGGGHHHH-HHTTCS---EEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCEEEEECC-CchhHHHHHHHHHcCC--ceeeccCChHHHHHHH-HHcCCc---EEEcCCCchhHHHHHHHHhcCCCCcE
Confidence 578999985 9999999999999994 3688888876655433 343322 223443333 233333322 37999
Q ss_pred EEEcccc
Q 022280 80 VVNCAAL 86 (300)
Q Consensus 80 vih~a~~ 86 (300)
||.+.+.
T Consensus 101 vid~~g~ 107 (174)
T d1p0fa2 101 AVECAGR 107 (174)
T ss_dssp EEECSCC
T ss_pred EEEcCCC
Confidence 9999773
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.70 E-value=0.013 Score=40.49 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=31.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL 42 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~ 42 (300)
.++++|.| +|++|-.++..|.++| .+|.+..+++..
T Consensus 30 ~~~vvIIG-gG~iG~E~A~~l~~~g---~~Vtli~~~~~~ 65 (121)
T d1d7ya2 30 QSRLLIVG-GGVIGLELAATARTAG---VHVSLVETQPRL 65 (121)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESSSST
T ss_pred CCeEEEEC-cchhHHHHHHHhhccc---ceEEEEeecccc
Confidence 57899998 8999999999999999 889988887543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=94.64 E-value=0.0086 Score=46.33 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+.+++|+|-| -|-+|+++++.|.+.| .+|++.+.+......+....+. +..++++ +++ . .+|++
T Consensus 37 l~g~~v~IqG-~GnVG~~~a~~L~~~G---akvv~~d~~~~~~~~~~~~~g~-------~~~~~~~---~~~-~-~cDIl 100 (230)
T d1leha1 37 LEGLAVSVQG-LGNVAKALCKKLNTEG---AKLVVTDVNKAAVSAAVAEEGA-------DAVAPNA---IYG-V-TCDIF 100 (230)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHCC-------EECCGGG---TTT-C-CCSEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC---CEEEeecccHHHHHHHHHhcCC-------cccCCcc---ccc-c-cccEe
Confidence 3578999999 9999999999999999 8899887765444444333211 1223332 222 1 89999
Q ss_pred EEcccc
Q 022280 81 VNCAAL 86 (300)
Q Consensus 81 ih~a~~ 86 (300)
+-||-.
T Consensus 101 ~PcA~~ 106 (230)
T d1leha1 101 APCALG 106 (230)
T ss_dssp EECSCS
T ss_pred cccccc
Confidence 999874
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.42 E-value=0.0077 Score=45.14 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=33.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ 44 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~ 44 (300)
-++|.|.|| |.+|+.++..++..| ++|++.+++++...
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G---~~V~l~D~~~~~l~ 41 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKG---TPILMKDINEHGIE 41 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTT---CCEEEECSSHHHHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC---CeEEEEECCHHHHh
Confidence 468999995 999999999999999 89999999865444
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.37 E-value=0.032 Score=40.55 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=58.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
..+|+|.| .|-.|..-++.+...| ..|.+++.+.+....+...++..+.. -..+.+.+++.++ ..|+||.
T Consensus 32 pa~V~ViG-aGvaG~~A~~~A~~lG---A~V~~~D~~~~~l~~l~~~~~~~~~~---~~~~~~~l~~~~~---~aDivI~ 101 (168)
T d1pjca1 32 PGKVVILG-GGVVGTEAAKMAVGLG---AQVQIFDINVERLSYLETLFGSRVEL---LYSNSAEIETAVA---EADLLIG 101 (168)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHGGGSEE---EECCHHHHHHHHH---TCSEEEE
T ss_pred CcEEEEEC-CChHHHHHHHHHhhCC---CEEEEEeCcHHHHHHHHHhhccccee---ehhhhhhHHHhhc---cCcEEEE
Confidence 35899999 8999999999999999 89999999977776666555444442 2345555666665 8999999
Q ss_pred cccccC
Q 022280 83 CAALSV 88 (300)
Q Consensus 83 ~a~~~~ 88 (300)
++-+..
T Consensus 102 aalipG 107 (168)
T d1pjca1 102 AVLVPG 107 (168)
T ss_dssp CCCCTT
T ss_pred eeecCC
Confidence 987643
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=94.34 E-value=0.016 Score=43.87 Aligned_cols=68 Identities=21% Similarity=0.161 Sum_probs=45.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+.+++|.|-| -|-+|+++++.|.+.| .+|++.+.++......... ... ..+.+ +++. -.+|++
T Consensus 25 L~gk~v~IqG-~G~VG~~~A~~L~~~G---akvvv~d~d~~~~~~~~~~---g~~-----~~~~~---~~~~--~~~DI~ 87 (201)
T d1c1da1 25 LDGLTVLVQG-LGAVGGSLASLAAEAG---AQLLVADTDTERVAHAVAL---GHT-----AVALE---DVLS--TPCDVF 87 (201)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHT---TCE-----ECCGG---GGGG--CCCSEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEecchHHHHHHHHhh---ccc-----ccCcc---cccc--ccceee
Confidence 3578999998 8999999999999999 8898887664433322211 111 12222 2333 179999
Q ss_pred EEccc
Q 022280 81 VNCAA 85 (300)
Q Consensus 81 ih~a~ 85 (300)
+-||.
T Consensus 88 iPcA~ 92 (201)
T d1c1da1 88 APCAM 92 (201)
T ss_dssp EECSC
T ss_pred ecccc
Confidence 99875
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=94.32 E-value=0.063 Score=39.58 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=44.0
Q ss_pred CCCCeEEEEcCCccchHH-HHHhhhhccCCCceeeec-CCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCC
Q 022280 1 MSKKRVLVVGGTGYLGQH-LLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPD 78 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~-l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d 78 (300)
|++.||.|.| +|.+|+. .++.+.+.+.. ++++++ +++++....+.+.++.. . + .++++++++.- .+|
T Consensus 1 MkkirigiIG-~G~~g~~~h~~~l~~~~~~-~~i~~v~d~~~~~~~~~~~~~~~~-~-~------~~~~~ell~~~-~id 69 (181)
T d1zh8a1 1 LRKIRLGIVG-CGIAARELHLPALKNLSHL-FEITAVTSRTRSHAEEFAKMVGNP-A-V------FDSYEELLESG-LVD 69 (181)
T ss_dssp CCCEEEEEEC-CSHHHHHTHHHHHHTTTTT-EEEEEEECSSHHHHHHHHHHHSSC-E-E------ESCHHHHHHSS-CCS
T ss_pred CCCcEEEEEc-CCHHHHHHHHHHHHhCCCC-eEEEEEEeccHhhhhhhhcccccc-c-e------eeeeecccccc-ccc
Confidence 6677999999 7899986 46667664432 567654 44444445444443221 1 1 12356677643 799
Q ss_pred EEEEc
Q 022280 79 VVVNC 83 (300)
Q Consensus 79 ~vih~ 83 (300)
+|+-+
T Consensus 70 ~v~I~ 74 (181)
T d1zh8a1 70 AVDLT 74 (181)
T ss_dssp EEEEC
T ss_pred eeecc
Confidence 99876
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.31 E-value=0.018 Score=39.84 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=30.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
.++|+|.| +|++|-.++..|.+.| .+|++..+.+.
T Consensus 30 ~k~vvViG-gG~iG~E~A~~l~~~g---~~Vtlie~~~~ 64 (123)
T d1nhpa2 30 VNNVVVIG-SGYIGIEAAEAFAKAG---KKVTVIDILDR 64 (123)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESSSS
T ss_pred CCEEEEEC-ChHHHHHHHHHhhccc---eEEEEEEecCc
Confidence 46899998 8999999999999999 88888877643
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.031 Score=41.76 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|.|.| .|.||+.+++.|..-| .+|+..++....... .. .. .++++++++ ..|+|+
T Consensus 43 ~~~~vgiiG-~G~IG~~va~~l~~fg---~~v~~~d~~~~~~~~------~~---~~-----~~~l~ell~---~sDii~ 101 (188)
T d1sc6a1 43 RGKKLGIIG-YGHIGTQLGILAESLG---MYVYFYDIENKLPLG------NA---TQ-----VQHLSDLLN---MSDVVS 101 (188)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSCCCCCT------TC---EE-----CSCHHHHHH---HCSEEE
T ss_pred cceEEEEee-cccchhhhhhhccccc---ceEeeccccccchhh------hh---hh-----hhhHHHHHh---hcccee
Confidence 468899998 9999999999999999 899988876432210 00 11 124677777 679888
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.+...
T Consensus 102 i~~pl 106 (188)
T d1sc6a1 102 LHVPE 106 (188)
T ss_dssp ECCCS
T ss_pred ecccC
Confidence 77654
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=0.017 Score=41.51 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
+.+++|||.|| |.+|..-++.|++.| .+|++...
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~G---A~VtVvap 44 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTG---CKLTLVSP 44 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGT---CEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeC
Confidence 45799999995 889999999999999 67776643
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.019 Score=41.69 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
|.+|++.|.| .|.||+.+++.|...| .+|++....|
T Consensus 22 l~Gk~v~V~G-yG~iG~g~A~~~rg~G---~~V~v~e~dp 57 (163)
T d1li4a1 22 IAGKVAVVAG-YGDVGKGCAQALRGFG---ARVIITEIDP 57 (163)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCH
T ss_pred ecCCEEEEec-cccccHHHHHHHHhCC---CeeEeeeccc
Confidence 3579999999 9999999999999999 8899888764
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=94.06 E-value=0.06 Score=40.21 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.++++.|.| .|-||+.+++.|..-| .+|+..++........... .....++++++++ ..|+|+
T Consensus 46 ~g~tvgIiG-~G~IG~~va~~l~~fg---~~v~~~d~~~~~~~~~~~~----------~~~~~~~l~~ll~---~sD~v~ 108 (191)
T d1gdha1 46 DNKTLGIYG-FGSIGQALAKRAQGFD---MDIDYFDTHRASSSDEASY----------QATFHDSLDSLLS---VSQFFS 108 (191)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEECSSCCCHHHHHHH----------TCEECSSHHHHHH---HCSEEE
T ss_pred cccceEEee-cccchHHHHHHHHhhc---cccccccccccccchhhcc----------cccccCCHHHHHh---hCCeEE
Confidence 468999999 9999999999999999 8898888764433221111 0112234677777 678887
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.+...
T Consensus 109 l~~pl 113 (191)
T d1gdha1 109 LNAPS 113 (191)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 65543
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.86 E-value=0.061 Score=39.91 Aligned_cols=66 Identities=20% Similarity=0.121 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.++++.|.| .|.||+.+++.+..-| .+|++.++...+....... + ...+++++++ ..|+|+
T Consensus 43 ~~k~vgiiG-~G~IG~~va~~~~~fg---~~v~~~d~~~~~~~~~~~~----~--------~~~~l~ell~---~sDiv~ 103 (184)
T d1ygya1 43 FGKTVGVVG-LGRIGQLVAQRIAAFG---AYVVAYDPYVSPARAAQLG----I--------ELLSLDDLLA---RADFIS 103 (184)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEECTTSCHHHHHHHT----C--------EECCHHHHHH---HCSEEE
T ss_pred cceeeeecc-ccchhHHHHHHhhhcc---ceEEeecCCCChhHHhhcC----c--------eeccHHHHHh---hCCEEE
Confidence 467888888 8999999999999999 8999888775433221110 1 1123566777 789887
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.+...
T Consensus 104 ~~~Pl 108 (184)
T d1ygya1 104 VHLPK 108 (184)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 76543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=93.84 E-value=0.035 Score=41.42 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.++++.|.| .|-||+.+++.|..-| .+|+..++........... .+....++.++++ ..|+|+
T Consensus 43 ~~~~vgiiG-~G~IG~~va~~l~~fg---~~v~~~d~~~~~~~~~~~~----------~~~~~~~l~~~l~---~sD~v~ 105 (188)
T d2naca1 43 EAMHVGTVA-AGRIGLAVLRRLAPFD---VHLHYTDRHRLPESVEKEL----------NLTWHATREDMYP---VCDVVT 105 (188)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHGGGT---CEEEEECSSCCCHHHHHHH----------TCEECSSHHHHGG---GCSEEE
T ss_pred cccceeecc-ccccchhhhhhhhccC---ceEEEEeeccccccccccc----------cccccCCHHHHHH---hccchh
Confidence 467899999 9999999999999999 8999998864433222111 0112233555655 788886
Q ss_pred Ecccc
Q 022280 82 NCAAL 86 (300)
Q Consensus 82 h~a~~ 86 (300)
.+...
T Consensus 106 ~~~pl 110 (188)
T d2naca1 106 LNCPL 110 (188)
T ss_dssp ECSCC
T ss_pred hcccc
Confidence 65543
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=93.84 E-value=0.027 Score=42.55 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
.+++|.|.| .|-||+.+++.|..-| .+|++.++....... ... + ..+++++++ ..|+|+
T Consensus 44 ~~ktvgIiG-~G~IG~~va~~l~~fg---~~v~~~d~~~~~~~~------~~~-----~---~~~l~~l~~---~~D~v~ 102 (199)
T d1dxya1 44 GQQTVGVMG-TGHIGQVAIKLFKGFG---AKVIAYDPYPMKGDH------PDF-----D---YVSLEDLFK---QSDVID 102 (199)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSCCSSCC------TTC-----E---ECCHHHHHH---HCSEEE
T ss_pred cceeeeeee-cccccccccccccccc---eeeeccCCccchhhh------cch-----h---HHHHHHHHH---hcccce
Confidence 368899999 9999999999999999 899998876433110 111 1 123666776 688888
Q ss_pred Eccc
Q 022280 82 NCAA 85 (300)
Q Consensus 82 h~a~ 85 (300)
.+..
T Consensus 103 ~~~p 106 (199)
T d1dxya1 103 LHVP 106 (199)
T ss_dssp ECCC
T ss_pred eeec
Confidence 7654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.83 E-value=0.028 Score=39.40 Aligned_cols=36 Identities=19% Similarity=0.429 Sum_probs=31.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL 42 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~ 42 (300)
.++|+|.| +|++|-.++..|.+.| .+|.+..+.+..
T Consensus 35 ~k~v~VIG-gG~iG~E~A~~l~~~g---~~Vtvie~~~~~ 70 (133)
T d1q1ra2 35 DNRLVVIG-GGYIGLEVAATAIKAN---MHVTLLDTAARV 70 (133)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSSST
T ss_pred CCEEEEEC-CchHHHHHHHHHHhhC---cceeeeeecccc
Confidence 57899999 8999999999999999 889988887543
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=93.79 E-value=0.047 Score=39.40 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=37.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCch-hhhhhcCCCceeEEEeecCCchhHHHHHH--hcCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLP-QLLLDALPHSFVFFDVDLKSGSGFDAVAL--KFGQPD 78 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~~~~d 78 (300)
+.|+.|.| +|.||+.+...+++.-.. .+++++ +|+++.. ....+..+ +.. . .+.++.+.+ .+.++|
T Consensus 4 kirvaIIG-aG~ig~~~~~~~l~~~~~-~el~avas~~~~~~~~~~a~~~~--i~~-~-----~~~~d~l~~~~~~~~iD 73 (157)
T d1nvmb1 4 KLKVAIIG-SGNIGTDLMIKVLRNAKY-LEMGAMVGIDAASDGLARAQRMG--VTT-T-----YAGVEGLIKLPEFADID 73 (157)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHCSS-EEEEEEECSCTTCHHHHHHHHTT--CCE-E-----SSHHHHHHHSGGGGGEE
T ss_pred CcEEEEEc-CcHHHHHHHHHHHhhCCc-ceEEEEEecchhccchhhhhhcC--Ccc-c-----ccceeeeeecccccccC
Confidence 35899999 999998655444443222 677665 4554432 22333322 221 1 112333333 223789
Q ss_pred EEEEc
Q 022280 79 VVVNC 83 (300)
Q Consensus 79 ~vih~ 83 (300)
+||.+
T Consensus 74 iVf~A 78 (157)
T d1nvmb1 74 FVFDA 78 (157)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99986
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=93.76 E-value=0.028 Score=38.31 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL 42 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~ 42 (300)
.++++|.| +|++|-.++..|.+.| .+|.++.|.+..
T Consensus 21 p~~vvIiG-gG~ig~E~A~~l~~~G---~~Vtlve~~~~~ 56 (116)
T d1gesa2 21 PERVAVVG-AGYIGVELGGVINGLG---AKTHLFEMFDAP 56 (116)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSSSS
T ss_pred CCEEEEEC-CChhhHHHHHHhhccc---cEEEEEeecchh
Confidence 36899999 8999999999999999 889988887543
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.73 E-value=0.026 Score=38.93 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=31.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL 42 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~ 42 (300)
.++++|.| +|+||-.++..|.+.| .+|.+..+++..
T Consensus 23 p~~~vIiG-~G~ig~E~A~~l~~lG---~~Vtii~~~~~~ 58 (122)
T d1v59a2 23 PKRLTIIG-GGIIGLEMGSVYSRLG---SKVTVVEFQPQI 58 (122)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSSSS
T ss_pred CCeEEEEC-CCchHHHHHHHHHhhC---cceeEEEecccc
Confidence 46899999 8999999999999999 899988887543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.63 E-value=0.027 Score=38.40 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=31.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
.++++|.| +|++|-.++..|.+.| .+|+++.|.+.
T Consensus 22 p~~v~IiG-gG~ig~E~A~~l~~~G---~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIG-GGYIGIELGTAYANFG---TKVTILEGAGE 56 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESSSS
T ss_pred CCeEEEEC-CCccceeeeeeecccc---cEEEEEEecce
Confidence 36899999 8999999999999999 88998887754
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.096 Score=37.91 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH 37 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~ 37 (300)
+.+|+|+|.|.+..+|+.|+..|.++| .+|+...
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~g---atVt~~h 68 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAG---CTTTVTH 68 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTT---CEEEEEC
T ss_pred cccceEEEEeccccccHHHHHHHHHhh---ccccccc
Confidence 358999999999999999999999999 7776543
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.61 E-value=0.082 Score=38.58 Aligned_cols=80 Identities=18% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeec--CCchhHHHHHHhcCCCCE
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL--KSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~~~~~d~ 79 (300)
.+|+++|.|-+.-+|+.|+..|+++| .+|................. ........|+ ..++.+.+... ..|+
T Consensus 28 ~GK~vvVIGrS~iVG~Pla~lL~~~g---aTVt~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lk~~~~---~aDI 100 (171)
T d1edza1 28 YGKKCIVINRSEIVGRPLAALLANDG---ATVYSVDVNNIQKFTRGESL-KLNKHHVEDLGEYSEDLLKKCSL---DSDV 100 (171)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTS---CEEEEECSSEEEEEESCCCS-SCCCCEEEEEEECCHHHHHHHHH---HCSE
T ss_pred CCCEEEEECCccccHHHHHHHHHHCC---CEEEEeccccccccccccce-eeeeeccccccccchhHHhhccc---cCCE
Confidence 57999999999999999999999999 77765543311100000000 0001122333 22334555554 7899
Q ss_pred EEEcccccC
Q 022280 80 VVNCAALSV 88 (300)
Q Consensus 80 vih~a~~~~ 88 (300)
||..+|...
T Consensus 101 vIsavG~p~ 109 (171)
T d1edza1 101 VITGVPSEN 109 (171)
T ss_dssp EEECCCCTT
T ss_pred EEEccCCCc
Confidence 999887543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=93.60 E-value=0.033 Score=40.61 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
.+|||+|.| +|++|-.++..|.+.+.+ .+|++..+++
T Consensus 1 ~gkrivIvG-gG~~G~e~A~~l~~~~~~-~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVG-GGTGGATAAKYIKLADPS-IEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHCTT-SEEEEECSCS
T ss_pred CCCcEEEEC-ccHHHHHHHHHHHHcCCC-CcEEEEECCC
Confidence 378999999 899999999999999866 6788777664
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.54 E-value=0.033 Score=38.08 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=31.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
.++|+|.| +|++|-.++..|.+.| .+|++..|++.
T Consensus 22 p~~v~IiG-gG~iG~E~A~~l~~~g---~~Vtlv~~~~~ 56 (117)
T d1onfa2 22 SKKIGIVG-SGYIAVELINVIKRLG---IDSYIFARGNR 56 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHTTT---CEEEEECSSSS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhcc---ccceeeehhcc
Confidence 46899999 8999999999999999 89999888754
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.49 E-value=0.028 Score=41.35 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
|.+||.|-| .|-||+.+++.|+++.. .++++...
T Consensus 1 M~irIaING-fGRIGR~v~Ral~~~~d--ieiVaINd 34 (172)
T d2czca2 1 MKVKVGVNG-YGTIGKRVAYAVTKQDD--MELIGITK 34 (172)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHTCTT--EEEEEEEE
T ss_pred CcEEEEEEC-CCHHHHHHHHHHHhCCC--ceEEEEec
Confidence 457999999 79999999999988754 77766543
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=93.36 E-value=0.12 Score=37.68 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=27.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
|++|.|-| -|-||+.+++.|++++. .++++...
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~d--i~vvaInd 33 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDD--MKVIGVSK 33 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSS--EEEEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCC--ceEEEEec
Confidence 67999998 89999999999988875 67765544
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.29 E-value=0.036 Score=38.11 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=29.4
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
++++|.| +|++|-.++..|.+.| .+|++..|++
T Consensus 33 ~~vvIiG-gG~iG~E~A~~l~~~g---~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIG-GGFIGLELAGNLAEAG---YHVKLIHRGA 65 (122)
T ss_dssp SEEEEEE-CSHHHHHHHHHHHHTT---CEEEEECSSS
T ss_pred CcEEEEC-CcHHHHHHHHHhhccc---ceEEEEeccc
Confidence 6789988 8999999999999999 8898888764
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.28 E-value=0.098 Score=36.77 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=29.3
Q ss_pred CCeEEEEcCC---ccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGT---GYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGat---G~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
.++|.|.|++ +-.|..+++.|.+.| |+|+.+..+
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g---~~v~pVnP~ 55 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHG---YDVYPVNPK 55 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT---CEEEEECTT
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCC---CEEEEECCc
Confidence 4689999998 789999999999999 888876543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=0.33 Score=37.43 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=27.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
..+|+|.| .|.+|++++..|+..|- =++++++..
T Consensus 30 ~~~VliiG-~GglGs~va~~La~~Gv--g~i~lvD~D 63 (247)
T d1jw9b_ 30 DSRVLIVG-LGGLGCAASQYLASAGV--GNLTLLDFD 63 (247)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTC--SEEEEECCC
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCC--CeEEEECCc
Confidence 46899999 78899999999999994 256666654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.038 Score=38.16 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
.++++|.| +|+||-.++..|.+.| .+|+++.|++.
T Consensus 22 pk~vvIvG-gG~iG~E~A~~l~~~G---~~Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVG-AGYIAVEMAGILSALG---SKTSLMIRHDK 56 (125)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSSS
T ss_pred CCEEEEEc-CCccHHHHHHHHhcCC---cEEEEEeeccc
Confidence 36899999 8999999999999999 89999998754
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.17 E-value=0.042 Score=37.26 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=30.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
.++++|.| +|++|-.++..|.+.| .+|+++.+.+.
T Consensus 21 p~~vvIiG-gG~~G~E~A~~l~~~g---~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVG-GGYIGLELGIAYRKLG---AQVSVVEARER 55 (115)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHT---CEEEEECSSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHHhhcc---cceEEEeeecc
Confidence 46889998 8999999999999999 88998887644
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.1 Score=39.25 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=45.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc---------hhhhhhcCCCceeEEE-eecCCchhHHHHHHh
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL---------PQLLLDALPHSFVFFD-VDLKSGSGFDAVALK 73 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~---------~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~~~ 73 (300)
|||++.| ++-.|..+++.|++.| ++|.++...++. ...+... .++.++. .++.+.+ +.+.+..
T Consensus 1 Mkiv~~~-~~~~g~~~l~~L~~~g---~~I~~Vvt~~~~~~~~~~~~~~~~~a~~--~~i~~~~~~~~~~~~-~~~~i~~ 73 (203)
T d2blna2 1 MKTVVFA-YHDMGCLGIEALLAAG---YEISAIFTHTDNPGEKAFYGSVARLAAE--RGIPVYAPDNVNHPL-WVERIAQ 73 (203)
T ss_dssp CEEEEEE-CHHHHHHHHHHHHHTT---CEEEEEECCCC------CCCCHHHHHHH--HTCCEECCSCCCSHH-HHHHHHH
T ss_pred CeEEEEe-cCHHHHHHHHHHHHCC---CCEEEEEcCCCCCCcccccCHHHHHHHH--cCCcceecccccchh-hhhhhhh
Confidence 6788887 5557999999999999 777655433221 1112221 1344333 3455544 4444555
Q ss_pred cCCCCEEEEccc
Q 022280 74 FGQPDVVVNCAA 85 (300)
Q Consensus 74 ~~~~d~vih~a~ 85 (300)
+ ++|.+|....
T Consensus 74 ~-~~Dlii~~g~ 84 (203)
T d2blna2 74 L-SPDVIFSFYY 84 (203)
T ss_dssp T-CCSEEEEESC
T ss_pred h-cccceeeeec
Confidence 5 9999988754
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.02 E-value=0.096 Score=36.11 Aligned_cols=96 Identities=9% Similarity=0.042 Sum_probs=58.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEEc
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNC 83 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih~ 83 (300)
-+|+|.| +|-+|+.|++.+..... |+++++......... ..+ .++.. ...+.++...+. .++.++-+
T Consensus 4 ~~v~I~G-aG~~G~~l~~~l~~~~~--~~iv~fiDdd~~k~G--~~I-~Gi~V-----~~~~~l~~~~~~--~i~iai~~ 70 (126)
T d2dt5a2 4 WGLCIVG-MGRLGSALADYPGFGES--FELRGFFDVDPEKVG--RPV-RGGVI-----EHVDLLPQRVPG--RIEIALLT 70 (126)
T ss_dssp EEEEEEC-CSHHHHHHHHCSCCCSS--EEEEEEEESCTTTTT--CEE-TTEEE-----EEGGGHHHHSTT--TCCEEEEC
T ss_pred ceEEEEc-CCHHHHHHHHhHhhcCC--cEEEEEEeCchHhcC--CEE-CCEEE-----ecHHHHHHHHhh--cccEEEEe
Confidence 3799999 89999999998765432 899888775332210 011 22332 233445665542 56665554
Q ss_pred ccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecccc
Q 022280 84 AALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQV 131 (300)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~~ 131 (300)
... .. ...+++.|.+.|++.+..+++...
T Consensus 71 i~~----------~~---------~~~I~d~l~~~gIk~I~~f~~~~l 99 (126)
T d2dt5a2 71 VPR----------EA---------AQKAADLLVAAGIKGILNFAPVVL 99 (126)
T ss_dssp SCH----------HH---------HHHHHHHHHHHTCCEEEECSSSCC
T ss_pred CCH----------HH---------HHHHHHHHHHcCCCEEeecCceee
Confidence 321 00 036777788889988887766554
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=92.90 E-value=0.044 Score=37.49 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=30.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
.++++|.| +|+||-.++..|.+.| .+|.++.++..
T Consensus 22 p~~i~IiG-~G~ig~E~A~~l~~~G---~~Vtiv~~~~~ 56 (119)
T d3lada2 22 PGKLGVIG-AGVIGLELGSVWARLG---AEVTVLEAMDK 56 (119)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESSSS
T ss_pred CCeEEEEC-CChHHHHHHHHHHHcC---CceEEEEeecc
Confidence 47899999 8999999999999999 88888887744
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.17 Score=42.66 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=27.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
.+||||.|+ |.||..+++.|+..|- -++++++..
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gv--g~i~lvD~D 70 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGF--RQIHVIDMD 70 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTC--CCEEEECCC
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCC--CeEEEEECC
Confidence 468999995 6699999999999994 256666665
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.84 E-value=0.094 Score=38.22 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=46.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchh-HHHHHHh--cCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSG-FDAVALK--FGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~--~~~~d~ 79 (300)
+.+|+|.|+ |.+|...+..+...|. ..|+++++++++.+... +++. . ...|..+.+. .....+. -+++|+
T Consensus 29 g~~VlI~G~-Gg~g~~~~~~~~~~g~--~~Vi~~~~~~~rl~~a~-~~GA--d-~~in~~~~~~~~~~~~~~~~~~G~d~ 101 (175)
T d1cdoa2 29 GSTCAVFGL-GAVGLAAVMGCHSAGA--KRIIAVDLNPDKFEKAK-VFGA--T-DFVNPNDHSEPISQVLSKMTNGGVDF 101 (175)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHH-HTTC--C-EEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCEEEEEec-CCccchHHHHHHHHhh--chheeecchHHHHHHHH-HcCC--c-EEEcCCCcchhHHHHHHhhccCCcce
Confidence 568999996 5577777777777774 56888888766655433 3332 1 2234333221 2333222 137999
Q ss_pred EEEcccc
Q 022280 80 VVNCAAL 86 (300)
Q Consensus 80 vih~a~~ 86 (300)
+|.+.|.
T Consensus 102 vid~~G~ 108 (175)
T d1cdoa2 102 SLECVGN 108 (175)
T ss_dssp EEECSCC
T ss_pred eeeecCC
Confidence 9999873
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.64 E-value=0.075 Score=36.12 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=28.2
Q ss_pred CeEEEEcCC---ccchHHHHHhhhhccCCCceeeecCCC
Q 022280 4 KRVLVVGGT---GYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 4 ~~ilItGat---G~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
|+|.|.|+| +-.|..+.+.|++.| |+|+.+..+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g---~~V~pVnP~ 37 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKG---FEVLPVNPN 37 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT---CEEEEECTT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCC---CEEEEEccc
Confidence 689999998 779999999999999 888876533
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.38 E-value=0.043 Score=37.80 Aligned_cols=36 Identities=22% Similarity=0.500 Sum_probs=31.9
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCc
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL 42 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~ 42 (300)
.++++|.| +|+||-.++..|.+.| .+|+++.|++..
T Consensus 25 p~~~viiG-~G~iglE~A~~~~~~G---~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIG-AGYIGLEMGSVWGRIG---SEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESC-CSHHHHHHHHHHHHHT---CEEEEECSSSSS
T ss_pred CCeEEEEc-cchHHHHHHHHHHhcC---CeEEEEEEcccc
Confidence 46899999 8999999999999999 899999887554
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=92.36 E-value=0.54 Score=33.92 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=25.1
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
||.|-| =|-||+.+.+.+++++ .+|++...
T Consensus 2 kIgING-fGRIGR~~~R~~~~~~---~~ivaINd 31 (169)
T d1dssg1 2 KIGING-FGRIGRLVLRAALEMG---AQVVAVND 31 (169)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHHT---CCEEEEEC
T ss_pred eEEEEC-CcHHHHHHHHHHHhCC---CcEEEECC
Confidence 678888 8999999999999998 77766554
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.26 E-value=0.073 Score=36.24 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=30.7
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
+++++|.| +|++|-.++..|...| .+|.+..|++.
T Consensus 22 ~~~vvVvG-gG~ig~E~A~~l~~~g---~~vt~i~~~~~ 56 (121)
T d1mo9a2 22 GSTVVVVG-GSKTAVEYGCFFNATG---RRTVMLVRTEP 56 (121)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSCT
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcc---hhheEeeccch
Confidence 57899998 8999999999999999 78888888754
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=92.20 E-value=0.2 Score=37.64 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhc----------CCCceeEEEeecCCchhHHHHHH
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA----------LPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
.|||++.| ++-.+..+.+.|++.| +++.++...+++....... ....+.+...+..+.+.+.+.++
T Consensus 3 ~mKI~f~G-~~~~~~~~L~~L~~~~---~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (206)
T d1fmta2 3 SLRIIFAG-TPDFAARHLDALLSSG---HNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVA 78 (206)
T ss_dssp CCEEEEEE-CSHHHHHHHHHHHHTT---CEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHH
T ss_pred CcEEEEEC-CCHHHHHHHHHHHhCC---CCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHh
Confidence 58899998 6778889999999999 7766554433221110000 01234444555445555566666
Q ss_pred hcCCCCEEEEcccc
Q 022280 73 KFGQPDVVVNCAAL 86 (300)
Q Consensus 73 ~~~~~d~vih~a~~ 86 (300)
.+ ++|.+|.+...
T Consensus 79 ~~-~~d~~v~~~~~ 91 (206)
T d1fmta2 79 EL-QADVMVVVAYG 91 (206)
T ss_dssp HT-TCSEEEEESCC
T ss_pred hh-cceEEEeeccc
Confidence 66 89998886553
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.15 E-value=0.061 Score=37.13 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=31.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
.++++|.| +|+||-.++..|.+.| .+|+++.+++.
T Consensus 26 p~~vvIiG-gG~IG~E~A~~~~~~G---~~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIG-GGIIGLEMGTVYSTLG---SRLDVVEMMDG 60 (125)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHHT---CEEEEECSSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHhhcCC---CEEEEEEeecc
Confidence 46899999 8999999999999999 89999888754
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.00 E-value=0.036 Score=41.50 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=31.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhh
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLL 47 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~ 47 (300)
|||.|.| .|++|..++..| ++| ++|++.+-+++..+.+.
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g---~~V~g~Din~~~v~~l~ 39 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQ---NEVTIVDILPSKVDKIN 39 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTT---SEEEEECSCHHHHHHHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCC---CcEEEEECCHHHHHHHh
Confidence 6899997 999999999766 568 89999998866555443
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.86 E-value=0.22 Score=36.52 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=53.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEe-----------------ecCCchh
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV-----------------DLKSGSG 66 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-----------------D~~~~~~ 66 (300)
-+|+|+| .|-.|.+-++..+.-| ..|.+++.+++....+....+..+..... ++.. .+
T Consensus 30 a~VvViG-aGvaG~~Aa~~A~~lG---A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~-~~ 104 (183)
T d1l7da1 30 ARVLVFG-VGVAGLQAIATAKRLG---AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK-KQ 104 (183)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCSTTHHHHHHTTCEECCC-----------------------C-CH
T ss_pred cEEEEEc-CcHHHHHHHHHHHHcC---CEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH-HH
Confidence 4799999 7899999999999999 89999999988877776554322211000 0111 11
Q ss_pred HHHHHHhcCCCCEEEEcccccC
Q 022280 67 FDAVALKFGQPDVVVNCAALSV 88 (300)
Q Consensus 67 ~~~~~~~~~~~d~vih~a~~~~ 88 (300)
-+.+.+.+.+.|.||-.+-+..
T Consensus 105 ~~~l~~~l~~aDlVI~talipG 126 (183)
T d1l7da1 105 AEAVLKELVKTDIAITTALIPG 126 (183)
T ss_dssp HHHHHHHHTTCSEEEECCCCTT
T ss_pred HHHHHHHHHhhhhheeeeecCC
Confidence 2334444558999999887654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.72 E-value=0.1 Score=37.19 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=41.3
Q ss_pred CCeEEEE-cCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEE
Q 022280 3 KKRVLVV-GGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVV 81 (300)
Q Consensus 3 ~~~ilIt-GatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vi 81 (300)
++.++|. .+.||||..+++.|++.| .+|.++.+.+...... |-.....+...+.+. +++++.
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G---~~Vtlv~~~~~~~~~~-------------~~~~~~~~~~~l~~~-GV~i~~ 101 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAG---HEVTIVSGVHLANYMH-------------FTLEYPNMMRRLHEL-HVEELG 101 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTT---CEEEEEESSCTTTHHH-------------HTTCHHHHHHHHHHT-TCEEEE
T ss_pred CCceEEEecCCChHHHHHHHHHHHcC---CeEEEEecCCcccccc-------------chhHHHHHHHHHhhc-cceEEe
Confidence 3456665 357999999999999999 7888888764332211 222233344455544 677666
Q ss_pred Ec
Q 022280 82 NC 83 (300)
Q Consensus 82 h~ 83 (300)
+.
T Consensus 102 ~~ 103 (156)
T d1djqa2 102 DH 103 (156)
T ss_dssp TE
T ss_pred cc
Confidence 64
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=91.64 E-value=0.069 Score=41.20 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=29.5
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
++|+|.| +|..|-..+..|.++| ++|.++.|.
T Consensus 7 ~kVvVIG-aGiaGl~~A~~L~~~G---~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLG-SGVIGLSSALILARKG---YSVHILARD 38 (268)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESS
T ss_pred CcEEEEC-ccHHHHHHHHHHHHCC---CCEEEEeCC
Confidence 5899999 8999999999999999 889988875
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.60 E-value=0.066 Score=36.72 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=28.3
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+++.|.| +|+||-.++..|.+.| .+|.++.|+
T Consensus 21 ~~vvIIG-gG~iG~E~A~~l~~lG---~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVG-ASYVALECAGFLAGIG---LDVTVMVRS 52 (122)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTT---CCEEEEESS
T ss_pred CeEEEEC-CCccHHHHHHHHhhcC---CeEEEEEec
Confidence 5799999 8999999999999999 778877664
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=91.39 E-value=0.22 Score=35.49 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=29.5
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD 48 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~ 48 (300)
||-+.| .|.+|+.+++.|++.| +.+ +..|+.++...+.+
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g---~~~-~~~~~~~~~~~~~~ 40 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRF---PTL-VWNRTFEKALRHQE 40 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTS---CEE-EECSSTHHHHHHHH
T ss_pred eEEEEe-HHHHHHHHHHHHHhCC---CEE-EEeCCHHHHHHHHH
Confidence 688899 7999999999999998 655 45666555544443
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.90 E-value=0.88 Score=32.64 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=62.9
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchh---hhhhc------CCCceeE------------EEeecCC
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQ---LLLDA------LPHSFVF------------FDVDLKS 63 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~---~~~~~------~~~~~~~------------~~~D~~~ 63 (300)
||.|=| =|-||+.+.+.++++.. ++|++........+ .+++. ++..+.. ....-.+
T Consensus 2 kigING-fGRIGR~v~R~~~~~~~--~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~ 78 (166)
T d2b4ro1 2 KLGING-FGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD 78 (166)
T ss_dssp EEEEEC-CSHHHHHHHHHHHTCSS--EEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred eEEEEC-CCHHHHHHHHHHhhCCC--cEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCC
Confidence 677777 89999999999998743 77776654322222 22211 1111111 0112245
Q ss_pred chhHHHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeeccc------cccCCCC
Q 022280 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQ------VYEGVKS 137 (300)
Q Consensus 64 ~~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~~------~~~~~~~ 137 (300)
++.+.+... ++|+|+-|-|.+.. ...++.-.+.|++++|...... |||-..+
T Consensus 79 p~~i~W~~~---gvdiViEcTG~f~~-------------------~~~~~~hl~~gakkViiSAP~kd~~~tiV~GVN~~ 136 (166)
T d2b4ro1 79 PSQIPWGKC---QVDVVCESTGVFLT-------------------KELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHH 136 (166)
T ss_dssp GGGCCHHHH---TCSEEEECSSSCCS-------------------HHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGG
T ss_pred hHHcccccc---CCCEEEEecccccc-------------------hhhhhhhhccCCCEEEEecccccccceeeeecchh
Confidence 555443322 89999999886532 1333333457898888765432 5666555
Q ss_pred CCCC
Q 022280 138 FYKE 141 (300)
Q Consensus 138 ~~~E 141 (300)
.++.
T Consensus 137 ~~~~ 140 (166)
T d2b4ro1 137 QYDT 140 (166)
T ss_dssp GCCT
T ss_pred hcCC
Confidence 4443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.74 E-value=0.091 Score=42.46 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
.+|+|+|.| +|+-|-..|..|.+.| ++|.+.-++..
T Consensus 1 k~KKI~IIG-aG~sGL~aA~~L~k~G---~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVG-AGFSGAVIGRQLAEKG---HQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEEESSSS
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhCC---CCEEEEECCCC
Confidence 368999999 8999999999999999 88988877643
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.70 E-value=0.092 Score=39.08 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=29.0
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
|||+|.| +|++|-.++..|.+.+.+ .+|++..|++
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~~~-~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLHPD-AEIQWYEKGD 35 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHCTT-SEEEEEESSS
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCC-CeEEEEeCCC
Confidence 6899999 789999999999988755 6787776653
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.61 E-value=0.079 Score=46.17 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=27.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
..+|+|.|+ |.+|..+++-|+-.|- -++++++.+
T Consensus 25 ~s~VlvvG~-gglG~Ei~knLvl~GV--g~itivD~d 58 (529)
T d1yova1 25 SAHVCLINA-TATGTEILKNLVLPGI--GSFTIIDGN 58 (529)
T ss_dssp HCEEEECCC-SHHHHHHHHHHHTTTC--SEEEEECCS
T ss_pred CCCEEEECC-CHHHHHHHHHHHHhcC--CEEEEEcCC
Confidence 468999995 7799999999999993 356666654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=90.11 E-value=0.12 Score=40.78 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=30.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
+|||+|.| +|.-|-..+.+|.++| ++|+++.+++
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G---~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHG---LNVTVFEAEG 34 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTS---CEEEEECSSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCC---CCEEEEeCCC
Confidence 58999999 8999999999999999 8999887753
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.25 Score=35.80 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=30.3
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
+.+|+|.|.|.+..+|+.|+..|+++| .+|.....
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~g---atVt~~~~ 71 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNN---ATVTTCHS 71 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECT
T ss_pred cccceEEEEecCCccchHHHHHHHhcc---CceEEEec
Confidence 358999999999999999999999999 77775443
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=89.87 E-value=0.13 Score=36.41 Aligned_cols=75 Identities=20% Similarity=0.121 Sum_probs=42.7
Q ss_pred EEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCc----------eeEEEeecCCchhHHHHHHhcC-
Q 022280 7 LVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHS----------FVFFDVDLKSGSGFDAVALKFG- 75 (300)
Q Consensus 7 lItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~----------~~~~~~D~~~~~~~~~~~~~~~- 75 (300)
-+.| +|-+|+++++.|.+.+ ..+.+..|++++.+.+.+..... ...+..= ..++++.++.+++.
T Consensus 3 gfIG-~G~mg~~l~~~L~~~~---~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~-v~d~~i~~v~~~l~~ 77 (153)
T d2i76a2 3 NFVG-TGTLTRFFLECLKDRY---EIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVI-VPDRYIKTVANHLNL 77 (153)
T ss_dssp EEES-CCHHHHHHHHTTC-------CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEEC-SCTTTHHHHHTTTCC
T ss_pred EEEe-CcHHHHHHHHHHHhCC---CEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEe-ccchhhhHHHhhhcc
Confidence 3556 9999999999886654 33456788877777776654211 1111111 23345677776653
Q ss_pred CCCEEEEcccc
Q 022280 76 QPDVVVNCAAL 86 (300)
Q Consensus 76 ~~d~vih~a~~ 86 (300)
+-.+|+|+++.
T Consensus 78 ~~~ivi~~s~~ 88 (153)
T d2i76a2 78 GDAVLVHCSGF 88 (153)
T ss_dssp SSCCEEECCSS
T ss_pred cceeeeecccc
Confidence 23566787664
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=89.84 E-value=0.14 Score=37.71 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
+.|+|+|.| +|..|-..+..|.++| ++|++..+.+.
T Consensus 42 ~~k~V~IIG-aGPAGL~AA~~la~~G---~~Vtl~E~~~~ 77 (179)
T d1ps9a3 42 QKKNLAVVG-AGPAGLAFAINAAARG---HQVTLFDAHSE 77 (179)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEEESSSS
T ss_pred CCcEEEEEC-ccHHHHHHHHHHHhhc---cceEEEeccCc
Confidence 368999999 8999999999999999 88998887643
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.80 E-value=0.095 Score=38.66 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCc-eeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPY-DVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~-~v~~~~r~~~ 41 (300)
++||+|.| +|..|-..+..|.++| + +|++..+++.
T Consensus 4 ~~kVaIIG-aGpaGl~aA~~l~~~G---~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLG-AGPASISCASFLARLG---YSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHTT---CCCEEEEESSSS
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCC---CCeEEEEEecCc
Confidence 58999999 8999999999999999 6 4877777643
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=89.62 E-value=1.6 Score=31.44 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=25.4
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
|||.|-| =|-||+.+.|.++++.....+|++...
T Consensus 1 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd 34 (172)
T d1rm4a1 1 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVIND 34 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence 5788888 899999999998876542256665443
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=89.58 E-value=0.13 Score=37.45 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=43.4
Q ss_pred CCeEEEEcCCccchHHH--HHhhhhc-cCCCceeeecCCCCCchhhhh-------hcCCCceeEEEeecCCchhHHHHHH
Q 022280 3 KKRVLVVGGTGYLGQHL--LQGLSEI-EGKPYDVAATHHSTPLPQLLL-------DALPHSFVFFDVDLKSGSGFDAVAL 72 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l--~~~L~~~-g~~~~~v~~~~r~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (300)
.|||-|.|| |.+|+.+ +..|+.. +....+++..+.++++..... ...+.... +....+.++.++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~-----i~~~td~~eaL~ 75 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLK-----FEKTMNLDDVII 75 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCE-----EEEESCHHHHHT
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeE-----EEEeCChhhccc
Confidence 579999995 8888653 3334332 211158999999865443211 11222222 111222455555
Q ss_pred hcCCCCEEEEcccccC
Q 022280 73 KFGQPDVVVNCAALSV 88 (300)
Q Consensus 73 ~~~~~d~vih~a~~~~ 88 (300)
+.|+|+++++...
T Consensus 76 ---dad~Vv~~~~~g~ 88 (171)
T d1obba1 76 ---DADFVINTAMVGG 88 (171)
T ss_dssp ---TCSEEEECCCTTH
T ss_pred ---CCCeEeeeccccc
Confidence 9999999987643
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.58 E-value=0.9 Score=33.39 Aligned_cols=34 Identities=29% Similarity=0.293 Sum_probs=25.6
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCC--CceeeecC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGK--PYDVAATH 37 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~--~~~v~~~~ 37 (300)
.++|.|=| =|-||+.+.|.+++++.. ..+|+...
T Consensus 2 ~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~In 37 (190)
T d1k3ta1 2 PIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVV 37 (190)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEE
T ss_pred CeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEe
Confidence 47899999 999999999999887531 15555533
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=89.10 E-value=0.4 Score=34.37 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=40.8
Q ss_pred CeEEEEcCCccchHH-HHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEEEE
Q 022280 4 KRVLVVGGTGYLGQH-LLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVN 82 (300)
Q Consensus 4 ~~ilItGatG~iG~~-l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~vih 82 (300)
+||.|.| .|.+|+. ....|.+.+. +++++.+++++....+.+.++... + .+|. +++++. .+|+|+-
T Consensus 2 irvgiiG-~G~~~~~~~~~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~--~---~~~~---~~ll~~--~iD~V~I 68 (167)
T d1xeaa1 2 LKIAMIG-LGDIAQKAYLPVLAQWPD--IELVLCTRNPKVLGTLATRYRVSA--T---CTDY---RDVLQY--GVDAVMI 68 (167)
T ss_dssp EEEEEEC-CCHHHHHTHHHHHTTSTT--EEEEEECSCHHHHHHHHHHTTCCC--C---CSST---TGGGGG--CCSEEEE
T ss_pred eEEEEEc-CCHHHHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHhccccc--c---cccH---HHhccc--ccceecc
Confidence 5899999 6788865 5566655543 777777776666665555543211 1 1232 233332 7999887
Q ss_pred cc
Q 022280 83 CA 84 (300)
Q Consensus 83 ~a 84 (300)
+.
T Consensus 69 ~t 70 (167)
T d1xeaa1 69 HA 70 (167)
T ss_dssp CS
T ss_pred cc
Confidence 63
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=89.09 E-value=0.16 Score=39.27 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
.+||+|.| .|..|..++..|.++| ++|++..|+++
T Consensus 4 ~~kV~IiG-aG~aGl~~A~~L~~~G---~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVG-GSISGLTAALMLRDAG---VDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSSS
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHCC---CCEEEEeCCCC
Confidence 47899999 8999999999999999 89999988654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=88.76 E-value=0.14 Score=39.96 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=28.4
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
|+|.| +|.+|..++..|+++| .+|+++.+..
T Consensus 7 vvIIG-aGi~Gls~A~~La~~G---~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIG-GGIIGSAIAYYLAKEN---KNTALFESGT 37 (276)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTT---CCEEEECSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCC---CcEEEEeCCC
Confidence 99999 8999999999999999 8899988863
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=88.63 E-value=0.67 Score=33.39 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=26.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
|||.|=| =|-||+.+.|.|.+++ .+|++....
T Consensus 1 ikigING-fGRIGR~~~R~l~~~~---i~iv~INd~ 32 (168)
T d2g82a1 1 MKVGING-FGRIGRQVFRILHSRG---VEVALINDL 32 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHT---CCEEEEECS
T ss_pred CEEEEEC-CcHHHHHHHHHHhcCC---CEEEEECCC
Confidence 5788888 8999999999999998 787766543
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.46 E-value=0.12 Score=41.04 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
.+++|.|-| -|-+|+++++.|.+.| .+|+++..
T Consensus 35 ~gktvaIqG-fGnVG~~~A~~L~e~G---akvv~vsD 67 (293)
T d1hwxa1 35 GDKTFAVQG-FGNVGLHSMRYLHRFG---AKCVAVGE 67 (293)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEEc
Confidence 468899999 7999999999999999 77877654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=88.12 E-value=0.16 Score=39.75 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=29.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
|+|+|.| +|.-|-..+..|.++| ++|+++-+++
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G---~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRG---TDAVLLESSA 33 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTT---CCEEEECSSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCC---CCEEEEecCC
Confidence 6799999 5999999999999999 8898887753
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=88.04 E-value=2.9 Score=29.86 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=24.5
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
||.|=| =|-||+.+.|.++++.....+|++...
T Consensus 2 kIgING-fGRIGR~v~R~~~~~~~~~i~vvaINd 34 (169)
T d1hdgo1 2 RVAING-FGRIGRLVYRIIYERKNPDIEVVAIND 34 (169)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred EEEEEC-CChHHHHHHHHHHhccCCCEEEEEecc
Confidence 677887 899999999999976432167765543
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.97 E-value=0.25 Score=36.22 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=44.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeec-CCCCCchhhhhhcC--CCceeEEEeecCCchhHHHHHHhcCCCCE
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT-HHSTPLPQLLLDAL--PHSFVFFDVDLKSGSGFDAVALKFGQPDV 79 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~-~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~d~ 79 (300)
++||.|.| +|.+|+..++.|..... +++++. +++++....+.+.. +....+ .++++++++.. .+|+
T Consensus 1 kiki~iIG-~G~~g~~~~~~l~~~~~--~~i~ai~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ll~~~-~iD~ 69 (184)
T d1ydwa1 1 QIRIGVMG-CADIARKVSRAIHLAPN--ATISGVASRSLEKAKAFATANNYPESTKI-------HGSYESLLEDP-EIDA 69 (184)
T ss_dssp CEEEEEES-CCTTHHHHHHHHHHCTT--EEEEEEECSSHHHHHHHHHHTTCCTTCEE-------ESSHHHHHHCT-TCCE
T ss_pred CeEEEEEc-CCHHHHHHHHHHHhCCC--CEEEEEEeCCccccccchhccccccceee-------cCcHHHhhhcc-ccce
Confidence 35899999 68999999999877532 788755 44444444444432 121221 23466777654 8999
Q ss_pred EEEc
Q 022280 80 VVNC 83 (300)
Q Consensus 80 vih~ 83 (300)
|+-+
T Consensus 70 v~I~ 73 (184)
T d1ydwa1 70 LYVP 73 (184)
T ss_dssp EEEC
T ss_pred eeec
Confidence 9975
|
| >d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: YxiM C-terminal domain-like domain: Hypothetical protein YxiM species: Bacillus subtilis [TaxId: 1423]
Probab=87.97 E-value=2 Score=31.28 Aligned_cols=106 Identities=8% Similarity=0.121 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCCcc-------------chHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeEEEeecCCchhH
Q 022280 1 MSKKRVLVVGGTGY-------------LGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGF 67 (300)
Q Consensus 1 ~~~~~ilItGatG~-------------iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 67 (300)
+.+++|+++|=|=- -|..|.++|-..+ ++|+=...+......+. +...+
T Consensus 1 ~~~~ti~~~GDS~~~g~~~~~~~~~~Gw~~~L~~~l~~~~---~~v~N~gi~G~t~~~~~---------------~~~~~ 62 (208)
T d2o14a2 1 VTNRTIYVGGDSTVCNYYPLNSSKQAGWGQMLPHYIDKHT---FQVRNMASGGQIARGFR---------------NDGQL 62 (208)
T ss_dssp CCCCEEEEEECTTTSCCSSTTTCSBCCHHHHGGGTSCTTT---CEEEECCCTTCCHHHHH---------------HSSHH
T ss_pred CCCCEEEEEEcccccCcCCCCCCCCCCHHHHHHHHhCCCc---eEEEeCeechhhhccHh---------------hhhhH
Confidence 35788999986522 2345555554455 56554444332222111 11123
Q ss_pred HHHHHhcCCCCEEEEcccccCccccccChhhhhhcccccchHHHHHhhhhccCCeEEEeecc
Q 022280 68 DAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTD 129 (300)
Q Consensus 68 ~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (300)
......+.++|+||-+.|..+.........+.+..|+ ..+++.+++.+. ++|.+++.
T Consensus 63 ~~~~~~~~~~D~vvi~~G~ND~~~~~~~~~~~~~~~l----~~li~~~~~~~~-~~vl~~~~ 119 (208)
T d2o14a2 63 EAILKYIKPGDYFMLQLGINDTNPKHKESEAEFKEVM----RDMIRQVKAKGA-DVILSTPQ 119 (208)
T ss_dssp HHHHTTCCTTCEEEEECCTGGGCGGGCCCHHHHHHHH----HHHHHHHHTTTC-EEEEECCC
T ss_pred HHHHHhcCCCCEEEEEcCCCcccccccccHHHHHHHH----HHHHHHHHhcCC-ceeecccc
Confidence 4445545467999988886653221223334444444 467777777777 56666543
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.87 E-value=0.23 Score=37.93 Aligned_cols=35 Identities=34% Similarity=0.428 Sum_probs=31.1
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
.++|+|.| +|..|-..+..|.++| ++|++..++.+
T Consensus 49 ~k~VvIIG-aGpAGl~aA~~l~~~G---~~v~l~E~~~~ 83 (233)
T d1djqa3 49 KDSVLIVG-AGPSGSEAARVLMESG---YTVHLTDTAEK 83 (233)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSSS
T ss_pred CceEEEEc-ccHHHHHHHHHHHHhc---cceeeEeeccc
Confidence 57899999 8999999999999999 88998887643
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=87.61 E-value=1.5 Score=31.44 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=26.1
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH 38 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r 38 (300)
-||.|=| =|-||+.+.|.++++.. +++++...
T Consensus 2 ikIgING-FGRIGR~v~R~~~~~~~--~~ivaINd 33 (169)
T d1u8fo1 2 VKVGVNG-FGRIGRLVTRAAFNSGK--VDIVAIND 33 (169)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCS--SEEEEEEC
T ss_pred cEEEEEC-CcHHHHHHHHHHHHCCC--cEEEEecC
Confidence 4788888 89999999999998864 77766654
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.55 E-value=0.54 Score=35.07 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=25.2
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATH 37 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~ 37 (300)
|||++.| ++..|..+.+.|+++| ++|+++.
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~---~~i~~V~ 30 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEG---HEVVGVF 30 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCC---CcEEEEE
Confidence 6899998 6788999999999999 7776654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.33 E-value=0.097 Score=39.93 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.9
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGK 29 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~ 29 (300)
|||+|.| +|.+|...+..|+++|++
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~~ 25 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYHS 25 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCC
Confidence 6899999 899999999999999943
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=87.24 E-value=0.19 Score=36.47 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGK 29 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~ 29 (300)
.++|+|.| +|++|-.++..|.+.|.+
T Consensus 3 ~~~VvIIG-gG~~G~e~A~~l~~~g~~ 28 (185)
T d1q1ra1 3 NDNVVIVG-TGLAGVEVAFGLRASGWE 28 (185)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEC-CcHHHHHHHHHHHHcCCc
Confidence 57899999 899999999999999944
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=87.09 E-value=2 Score=30.59 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=26.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+||.|=| =|-||+.+.|.++++.. .+|++....
T Consensus 2 ikigING-FGRIGR~v~R~~~~~~~--i~ivaINd~ 34 (166)
T d1gado1 2 IKVGING-FGRIGRIVFRAAQKRSD--IEIVAINDL 34 (166)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCSS--EEEEEEECS
T ss_pred eEEEEEC-CcHHHHHHHHHHhhCCC--eEEEEEeCC
Confidence 4788888 89999999999999864 777766554
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=87.00 E-value=0.29 Score=39.54 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
++|+|+|.| +|.-|-..+..|+++|.. ++|++.-|+.
T Consensus 3 ~~KrVaIIG-aG~sGl~~A~~L~~~~~~-~~v~vfEk~~ 39 (335)
T d2gv8a1 3 TIRKIAIIG-AGPSGLVTAKALLAEKAF-DQVTLFERRG 39 (335)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTCC-SEEEEECSSS
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHhCCC-CCEEEEECCC
Confidence 468999999 899999999999988743 5888888774
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=86.74 E-value=0.13 Score=37.59 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeee
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA 35 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~ 35 (300)
|+.+|+|.| +|++|-.++..|.+.|.+ .+++.
T Consensus 2 m~a~VvIIG-gG~~G~e~A~~l~~~g~~-v~i~~ 33 (183)
T d1d7ya1 2 LKAPVVVLG-AGLASVSFVAELRQAGYQ-GLITV 33 (183)
T ss_dssp CCSSEEEEC-CSHHHHHHHHHHHHHTCC-SCEEE
T ss_pred CCCCEEEEC-ccHHHHHHHHHHHhcCCc-eEEEE
Confidence 356799999 999999999999999954 33433
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.62 E-value=0.24 Score=39.42 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
|..|+|.| +|+-|-.+++.|++.| ++|.+.-++..
T Consensus 1 M~dv~IIG-aG~sGl~~A~~L~~~g---~~V~iiEk~~~ 35 (298)
T d1i8ta1 1 MYDYIIVG-SGLFGAVCANELKKLN---KKVLVIEKRNH 35 (298)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHGGGT---CCEEEECSSSS
T ss_pred CccEEEEC-CcHHHHHHHHHHHhCC---CcEEEEECCCC
Confidence 45799999 8999999999999999 78888877643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.22 E-value=0.22 Score=39.17 Aligned_cols=34 Identities=29% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
+.+|+|.| .|..|..++..|.+.| ++|.+..+++
T Consensus 2 k~~V~IvG-aGp~Gl~~A~~L~~~G---~~v~vlE~~~ 35 (292)
T d1k0ia1 2 KTQVAIIG-AGPSGLLLGQLLHKAG---IDNVILERQT 35 (292)
T ss_dssp BCSEEEEC-CSHHHHHHHHHHHHHT---CCEEEECSSC
T ss_pred CCCEEEEC-cCHHHHHHHHHHHHCC---CCEEEEeCCC
Confidence 34799999 6799999999999999 8899998874
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.17 E-value=0.48 Score=37.55 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.2
Q ss_pred CCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 11 GTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 11 atG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
.||-.|.+|+++++.+| ++|+...+.
T Consensus 44 SSGk~G~alA~~~~~~G---a~V~li~g~ 69 (290)
T d1p9oa_ 44 SSGRRGATSAEAFLAAG---YGVLFLYRA 69 (290)
T ss_dssp CCCHHHHHHHHHHHHTT---CEEEEEEET
T ss_pred CchHHHHHHHHHHHHcC---CEEEEEecC
Confidence 45889999999999999 888877654
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=85.91 E-value=0.11 Score=37.63 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=40.8
Q ss_pred CeEEEEcCCccchHHHHHh-hhhccC--CCceeeecCCCCCchhhhhh---cC-CCceeEEEeecCCchhHHHHHHhcCC
Q 022280 4 KRVLVVGGTGYLGQHLLQG-LSEIEG--KPYDVAATHHSTPLPQLLLD---AL-PHSFVFFDVDLKSGSGFDAVALKFGQ 76 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~-L~~~g~--~~~~v~~~~r~~~~~~~~~~---~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (300)
|||.|.|| |.+|..++-. |+..-. .+-++.+.+.++++.....+ .. ..... +. .+. +..+.++ +
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~-~~--~t~--~~~~~l~---~ 71 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFK-VL--ISD--TFEGAVV---D 71 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSE-EE--ECS--SHHHHHT---T
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCce-EE--Eec--CcccccC---C
Confidence 68999997 4477666633 332211 11578988887654432221 10 11222 11 222 1233444 8
Q ss_pred CCEEEEccccc
Q 022280 77 PDVVVNCAALS 87 (300)
Q Consensus 77 ~d~vih~a~~~ 87 (300)
.|+||..|+..
T Consensus 72 aDvVVita~~~ 82 (162)
T d1up7a1 72 AKYVIFQFRPG 82 (162)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEecccC
Confidence 99999999864
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=85.69 E-value=0.3 Score=38.83 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=30.4
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
.++|+|.| +|..|-..+..|.++| ++|+++.+++
T Consensus 30 pkkV~IIG-aG~aGLsaA~~L~~~G---~~V~vlE~~~ 63 (370)
T d2iida1 30 PKHVVIVG-AGMAGLSAAYVLAGAG---HQVTVLEASE 63 (370)
T ss_dssp CCEEEEEC-CBHHHHHHHHHHHHHT---CEEEEECSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCC---CCEEEEeCCC
Confidence 47899999 8999999999999999 8999888763
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=85.09 E-value=0.34 Score=34.70 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
.+|+++|.| -|.+|+.+++.|...| .+|+++-.+|
T Consensus 22 aGk~vvV~G-YG~vGrG~A~~~rg~G---a~V~V~E~DP 56 (163)
T d1v8ba1 22 SGKIVVICG-YGDVGKGCASSMKGLG---ARVYITEIDP 56 (163)
T ss_dssp TTSEEEEEC-CSHHHHHHHHHHHHHT---CEEEEECSCH
T ss_pred cCCEEEEec-ccccchhHHHHHHhCC---CEEEEEecCc
Confidence 578999999 9999999999999999 8898887764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=84.93 E-value=0.36 Score=35.19 Aligned_cols=73 Identities=18% Similarity=0.044 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcC----------------CCceeEEEeecCCch
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL----------------PHSFVFFDVDLKSGS 65 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~----------------~~~~~~~~~D~~~~~ 65 (300)
.+++||..|+. .| ..+..|+++| ++|++++.++.......+.. .....++.+|+.+..
T Consensus 20 ~~~rvLd~GCG--~G-~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 20 PGARVLVPLCG--KS-QDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp TTCEEEETTTC--CS-HHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred CCCEEEEecCc--CC-HHHHHHHHcC---CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 35799999964 23 3555777889 99999999866555443322 123456777777654
Q ss_pred hHHHHHHhcCCCCEEEEccc
Q 022280 66 GFDAVALKFGQPDVVVNCAA 85 (300)
Q Consensus 66 ~~~~~~~~~~~~d~vih~a~ 85 (300)
... .. ..|.|+....
T Consensus 94 ~~~--~~---~~D~i~~~~~ 108 (201)
T d1pjza_ 94 ARD--IG---HCAAFYDRAA 108 (201)
T ss_dssp HHH--HH---SEEEEEEESC
T ss_pred ccc--cc---ceeEEEEEee
Confidence 211 12 6787776443
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=84.90 E-value=0.76 Score=32.67 Aligned_cols=67 Identities=18% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCeEEEEcCCccchHH-HHHhhhhccCCCceeeecC-CCCCchhhhhhcCCCceeEEEeecCCchhHHHHHHhcCCCCEE
Q 022280 3 KKRVLVVGGTGYLGQH-LLQGLSEIEGKPYDVAATH-HSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVV 80 (300)
Q Consensus 3 ~~~ilItGatG~iG~~-l~~~L~~~g~~~~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~d~v 80 (300)
+++|.|.| +|.+|+. ..+.|..... ++++++. ++++....+.+.+. .+..+ .++.+.+ .+|+|
T Consensus 1 Kiri~iIG-~G~~g~~~~~~~l~~~~~--~~i~~v~d~~~~~~~~~~~~~~-------~~~~~--~~~~l~~---~~D~V 65 (164)
T d1tlta1 1 KLRIGVVG-LGGIAQKAWLPVLAAASD--WTLQGAWSPTRAKALPICESWR-------IPYAD--SLSSLAA---SCDAV 65 (164)
T ss_dssp CEEEEEEC-CSTHHHHTHHHHHHSCSS--EEEEEEECSSCTTHHHHHHHHT-------CCBCS--SHHHHHT---TCSEE
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHhCCC--cEEEEEEechhHhhhhhhhccc-------ccccc--cchhhhh---hcccc
Confidence 46899999 6899975 4666655432 7776554 55555555554421 12222 2455554 79998
Q ss_pred EEcc
Q 022280 81 VNCA 84 (300)
Q Consensus 81 ih~a 84 (300)
+-+.
T Consensus 66 ~I~t 69 (164)
T d1tlta1 66 FVHS 69 (164)
T ss_dssp EECS
T ss_pred cccc
Confidence 8763
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=84.53 E-value=0.23 Score=38.08 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCccchHHHHHhhhh-ccCCCceeeecCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHH 38 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~-~g~~~~~v~~~~r 38 (300)
++++|.|-| .|-+|+++++.|.+ .| ..|++...
T Consensus 30 ~g~~vaIqG-~GnVG~~~a~~L~~e~G---a~vv~vsd 63 (234)
T d1b26a1 30 KKATVAVQG-FGNVGQFAALLISQELG---SKVVAVSD 63 (234)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHHHC---CEEEEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHhcC---CceEEeec
Confidence 578899888 99999999999975 58 67776553
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=84.32 E-value=3.7 Score=28.01 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=27.1
Q ss_pred CCeEEEEcCC---ccchHHHHHhhhhccCCCceeeecC
Q 022280 3 KKRVLVVGGT---GYLGQHLLQGLSEIEGKPYDVAATH 37 (300)
Q Consensus 3 ~~~ilItGat---G~iG~~l~~~L~~~g~~~~~v~~~~ 37 (300)
.++|.|.||| +-.|..+.+.|++.| |.++...
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g---~~~~~v~ 47 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQG---YRVLPVN 47 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTT---CEEEEEC
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCC---CCceEEE
Confidence 4689999998 679999999999999 7776554
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.11 E-value=0.28 Score=37.76 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhh-ccCCCceeeecCCC
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHHS 39 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~-~g~~~~~v~~~~r~ 39 (300)
.+++|.|-| -|-+|+++++.|.+ .| ..|++...+
T Consensus 31 ~g~~v~IqG-fGnVG~~~a~~L~~~~G---~kvv~vsD~ 65 (239)
T d1gtma1 31 KGKTIAIQG-YGNAGYYLAKIMSEDFG---MKVVAVSDS 65 (239)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC---CEEEEEECS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHhcC---cceeecccc
Confidence 578999999 68999999999986 47 677766543
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.71 E-value=3.6 Score=28.88 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCCchhhhhhcCCCceeE-EEeecC---CchhHHHHHHhc---
Q 022280 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVF-FDVDLK---SGSGFDAVALKF--- 74 (300)
Q Consensus 2 ~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~D~~---~~~~~~~~~~~~--- 74 (300)
++.|+.|.+.+|+.|--++..+.+.| .++- .-+++....+.+.+++.... =..|++ +++.+...++.+
T Consensus 2 ~G~rvaiit~sGG~~~l~aD~~~~~G---l~l~--~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~d 76 (163)
T d2csua3 2 RGNKVAIMTNAGGPGVLTADELDKRG---LKLA--TLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQD 76 (163)
T ss_dssp SSSEEEEEESCHHHHHHHHHHHHTTT---CEEC--CCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred CCCeEEEEECChHHHHHHHHHHHHcC---CccC--CCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHcC
Confidence 46899999999999999999999999 6653 22333344455555543221 123442 334444444432
Q ss_pred CCCCEEEEccc
Q 022280 75 GQPDVVVNCAA 85 (300)
Q Consensus 75 ~~~d~vih~a~ 85 (300)
+.+|.|+....
T Consensus 77 ~~vd~v~v~~~ 87 (163)
T d2csua3 77 PNVDMLIAICV 87 (163)
T ss_dssp TTCSEEEEEEE
T ss_pred CCcCEEEEeec
Confidence 47888765443
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.48 E-value=0.51 Score=32.65 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=27.4
Q ss_pred CCeEEEEcCCccchHHHHHhhh----hccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLS----EIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~----~~g~~~~~v~~~~r~~~ 41 (300)
.++++|.| +|++|-.++..|. +.| .+|+...+.+.
T Consensus 37 ~k~i~IvG-gG~~G~E~A~~l~~~~~~~g---~~Vt~i~~~~~ 75 (137)
T d1m6ia2 37 VKSITIIG-GGFLGSELACALGRKARALG---TEVIQLFPEKG 75 (137)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHHHHHT---CEEEEECSSSS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHHHHhcC---CEEEEeccccc
Confidence 46899998 7999999998885 457 78887777644
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.39 E-value=0.39 Score=36.17 Aligned_cols=31 Identities=29% Similarity=0.177 Sum_probs=28.2
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
|+|.| +|..|...+..|+++| ++|.++-+++
T Consensus 8 viViG-aG~~Gl~~A~~La~~G---~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDG---KKVLHIDKQD 38 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTT---CCEEEECSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCC---CCEEEEcCCC
Confidence 79999 9999999999999999 8899888764
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.31 E-value=0.37 Score=34.84 Aligned_cols=78 Identities=6% Similarity=-0.051 Sum_probs=39.8
Q ss_pred CCeEEEEcCC-ccchHHHHHhhhhccC-CCceeeecCCCCCch--hhhh-------hcCCCceeEEEeecCCchhHHHHH
Q 022280 3 KKRVLVVGGT-GYLGQHLLQGLSEIEG-KPYDVAATHHSTPLP--QLLL-------DALPHSFVFFDVDLKSGSGFDAVA 71 (300)
Q Consensus 3 ~~~ilItGat-G~iG~~l~~~L~~~g~-~~~~v~~~~r~~~~~--~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~ 71 (300)
+|||.|.||. .+.+..++.-++.... ++.+++..+.+++.. +.+. ........ ...-+| ..+.+
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~--~~~~td---~~~al 75 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIE--IHLTLD---RRRAL 75 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCE--EEEESC---HHHHH
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCce--eeecCC---chhhc
Confidence 4789999963 3444444444443211 114788888765431 1111 11111111 112233 23344
Q ss_pred HhcCCCCEEEEcccccC
Q 022280 72 LKFGQPDVVVNCAALSV 88 (300)
Q Consensus 72 ~~~~~~d~vih~a~~~~ 88 (300)
+ +.|+||.+|+...
T Consensus 76 ~---gaDvVv~ta~~~~ 89 (169)
T d1s6ya1 76 D---GADFVTTQFRVGG 89 (169)
T ss_dssp T---TCSEEEECCCTTH
T ss_pred C---CCCEEEEccccCC
Confidence 4 8999999998654
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=82.19 E-value=4 Score=27.12 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=29.8
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
..||+|-|-||-.|+.-+++.++-| -+|++-..+
T Consensus 6 ~trVlvQGiTG~~G~~ht~~m~~yG---T~vVaGVtP 39 (119)
T d2nu7a1 6 NTKVICQGFTGSQGTFHSEQAIAYG---TKMVGGVTP 39 (119)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEECT
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhC---CceEEEEcc
Confidence 4689999999999999999999999 777776655
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.26 E-value=0.64 Score=31.09 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=27.2
Q ss_pred CCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~~ 41 (300)
.++++|.| +|++|-.++..|.+.|.+..+|++..+.+.
T Consensus 20 p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 20 PRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred CCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 46899999 599999999766554421167888777643
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.24 E-value=0.64 Score=29.58 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.7
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeec
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAAT 36 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~ 36 (300)
|||||.| +|.=-++|+.+|.+.. .++++.
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~---~~v~~~ 29 (90)
T d1vkza2 1 VRVHILG-SGGREHAIGWAFAKQG---YEVHFY 29 (90)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHTT---CEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCC---CeEEEe
Confidence 7999999 7777899999999887 677765
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=81.22 E-value=0.64 Score=35.71 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 1 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
+.+++|+|-| -|-+|+++++.|.+.| .+|++...+
T Consensus 29 l~g~~v~IqG-fGnVG~~~a~~L~~~G---akvv~vsD~ 63 (242)
T d1v9la1 29 IEGKTVAIQG-MGNVGRWTAYWLEKMG---AKVIAVSDI 63 (242)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEEECS
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcC---CeEEEeecc
Confidence 3578999998 9999999999999999 788766643
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=81.21 E-value=0.55 Score=36.49 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=28.0
Q ss_pred EEEEcCCccchHHHHHhhhhccCCCceeeecCCCC
Q 022280 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST 40 (300)
Q Consensus 6 ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~~ 40 (300)
|+|.| +|..|..++.+|+++| ++|+++.+..
T Consensus 6 vvIIG-aGi~Gls~A~~La~~G---~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVG-AGSMGMAAGYQLAKQG---VKTLLVDAFD 36 (281)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTT---CCEEEECSSC
T ss_pred EEEEC-cCHHHHHHHHHHHHCC---CcEEEEeCCC
Confidence 78898 8999999999999999 8899988763
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=81.05 E-value=0.55 Score=35.27 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=44.8
Q ss_pred CCeEEEEcC-CccchHHHHHhhhhccCCCceeeecCCCCCchhhhhh---c-CCCceeEEEeecCCchhHHHHHHhcCCC
Q 022280 3 KKRVLVVGG-TGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD---A-LPHSFVFFDVDLKSGSGFDAVALKFGQP 77 (300)
Q Consensus 3 ~~~ilItGa-tG~iG~~l~~~L~~~g~~~~~v~~~~r~~~~~~~~~~---~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (300)
+++||-+|+ ||++...+++.+-..| +|++...+++....... . .-.++.++.+|..+.- ...+.+
T Consensus 76 g~~VLdiG~GtG~~s~~la~~~~~~g----~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~------~~~~~f 145 (213)
T d1dl5a1 76 GMRVLEIGGGTGYNAAVMSRVVGEKG----LVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV------PEFSPY 145 (213)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTC----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC------GGGCCE
T ss_pred cceEEEecCccchhHHHHHHHhCCCC----cEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc------ccccch
Confidence 578998876 5676666666664554 78888887554333222 1 1245566667765421 112368
Q ss_pred CEEEEcccc
Q 022280 78 DVVVNCAAL 86 (300)
Q Consensus 78 d~vih~a~~ 86 (300)
|.|+..++.
T Consensus 146 D~I~~~~~~ 154 (213)
T d1dl5a1 146 DVIFVTVGV 154 (213)
T ss_dssp EEEEECSBB
T ss_pred hhhhhhccH
Confidence 999988764
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.91 E-value=0.63 Score=32.96 Aligned_cols=31 Identities=32% Similarity=0.553 Sum_probs=25.6
Q ss_pred CeEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 4 ~~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
.||+|.| +|++|-.++..|.+ + .+|+++.+.
T Consensus 1 ~rVvIIG-gG~~G~e~A~~l~~-~---~~Vtvv~~~ 31 (167)
T d1xhca1 1 SKVVIVG-NGPGGFELAKQLSQ-T---YEVTVIDKE 31 (167)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTT-T---SEEEEECSS
T ss_pred CeEEEEC-CcHHHHHHHHHHHc-C---CCEEEEecc
Confidence 3799999 88999999999965 5 678887765
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=80.59 E-value=3.7 Score=29.32 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=24.9
Q ss_pred eEEEEcCCccchHHHHHhhhhccCCCceeeecCCC
Q 022280 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS 39 (300)
Q Consensus 5 ~ilItGatG~iG~~l~~~L~~~g~~~~~v~~~~r~ 39 (300)
||.|-| =|-||+.+.+.++++.. +++++.-..
T Consensus 3 kIgING-fGRIGR~v~R~~l~~~~--~~ivaINd~ 34 (171)
T d3cmco1 3 KVGING-FGRIGRNVFRAALKNPD--IEVVAVNDL 34 (171)
T ss_dssp EEEEES-CSHHHHHHHHHHTTCTT--EEEEEEECS
T ss_pred EEEEEC-CCHHHHHHHHHHhhCCC--cEEEEEcCC
Confidence 677777 89999999999998753 777666543
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=80.34 E-value=0.74 Score=30.69 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=27.5
Q ss_pred CCeEEEEcCCccchHHHHHhhhh---ccCCCceeeecCCCCC
Q 022280 3 KKRVLVVGGTGYLGQHLLQGLSE---IEGKPYDVAATHHSTP 41 (300)
Q Consensus 3 ~~~ilItGatG~iG~~l~~~L~~---~g~~~~~v~~~~r~~~ 41 (300)
.++++|.| .|++|-.++..|.+ .| .+|.+..|++.
T Consensus 18 p~~v~IiG-gG~ig~E~A~~l~~~~~~g---~~Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVG-GGYISIEFAGIFNAYKARG---GQVDLAYRGDM 55 (117)
T ss_dssp CSEEEEEC-SSHHHHHHHHHHHHHSCTT---CEEEEEESSSS
T ss_pred CCeEEEEC-CChHHHHHHHHhHhhcccc---cccceeccccc
Confidence 37899999 89999999976554 46 78888877643
|