Citrus Sinensis ID: 022289

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MEKEIRDESSPSDAKTSMTTATATTSSSLTSDFDFDFDFDFDVDFSSIYNSVFPPRSSLSPSLITDDRHRMATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFHRMTEDIPPAFAPNNVMEPNRLEKRTVLERESFPKSISVRSSGCTIKPKQANASSGTSRPRAQRVYVPPGNNKREEAEEAKAVELEVYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQERIPVPR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccHHHHHccccccccccEEcccHHHHHccccccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccccccccccccccccccccccHHHHcccccccEccccccccccccccccccccccccHHccccccccccccccccHHcccccccccccccHccccHHHccccccccccEEccccHHccccccccccccccHcHEEEcccccccccEEEEEcccccccccccc
mekeirdesspsdaktsmttatattsssltsdfdfdfdfdfdvdfssiynsvfpprsslspslitddrhRMATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSfhrmtedippafapnnvmepnrlekrtvleresfpksisvrssgctikpkqanassgtsrpraqrvyvppgnnkreeAEEAKAVELEVYNQGMWKTELCNkwqetgscpygdycqfahdftelrpvirhpkykTEVCRMVlsggicpyghrchfrhslteqeripvpr
mekeirdesspsdaktsmttatattsssltsdFDFDFDFDFDVDFSSiynsvfpprsslspsliTDDRHRMATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFHRMTEDIppafapnnvmepnRLEKrtvleresfpksisvrssgctikpkqanassgtsrpraqrvyvppgnnkreeaEEAKAVELEVYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHfrhslteqeripvpr
MEKEIRDESSPsdaktsmttatattsssltsdfdfdfdfdfdvdfssIYNSVFPPRSSLSPSLITDDRHRMATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQnadlrlanarllKIITGSFHRMTEDIPPAFAPNNVMEPNRLEKRTVLERESFPKSISVRSSGCTIKPKQANASSGTSRPRAQRVYVPPGNNKReeaeeakavelevYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQERIPVPR
*******************************DFDFDFDFDFDVDFSSIYNSVF*********************HRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFHRMTED****************************************************************************VELEVYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHS***********
***************************************DFDVDFSSIY******************************ARLILEYQQLCDHYDLCFSRLQAITRELETLR**NADLRLAN***********************************************************************************************************LCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHF**************
***************************SLTSDFDFDFDFDFDVDFSSIYNSVFPPRSSLSPSLITDDRHRMATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFHRMTEDIPPAFAPNNVMEPNRLEKRTVLERESFPKSISVRSSGCTI****************QRVYVPPGNNKREEAEEAKAVELEVYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLT*********
**************************SSLTSDFDFDFDFDFDVDFSSIYNSVFPPR***************ATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGS*********************************************************************PGNNKREE*EEAKAVELEVYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSL**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEKEIRDESSPSDAKTSMTTATATTSSSLTSDFDFDFDFDFDVDFSSIYNSVFPPRSSLSPSLITDDRHRMATEHRLQQARLILEYQQLCDHYDLCFSRxxxxxxxxxxxxxxxxxxxxxxxxxxxxITGSFHRMTEDIPPAFAPNNVMEPNRLEKRTVLERESFPKSISVRSSGCTIKPKQANASSGTSRPRAQRVYVPPGNNKREEAEEAKAVELEVYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQERIPVPR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query299 2.2.26 [Sep-21-2011]
Q9C9N3310 Zinc finger CCCH domain-c yes no 0.859 0.829 0.490 8e-63
Q6L5G1343 Zinc finger CCCH domain-c yes no 0.739 0.644 0.444 4e-50
A2ZVY5333 Zinc finger CCCH domain-c no no 0.709 0.636 0.462 1e-48
Q9C9F5308 Zinc finger CCCH domain-c no no 0.705 0.685 0.428 1e-45
Q10MN8457 Putative zinc finger CCCH no no 0.638 0.417 0.391 1e-30
Q7ZXW9 363 Zinc finger protein 36, C N/A no 0.254 0.209 0.552 4e-21
Q805B4 364 Zinc finger protein 36, C N/A no 0.254 0.208 0.552 9e-21
A4IIN5 333 Zinc finger protein 36, C no no 0.254 0.228 0.539 4e-20
P47974 494 Zinc finger protein 36, C yes no 0.254 0.153 0.564 4e-20
Q07352 338 Zinc finger protein 36, C no no 0.250 0.221 0.546 6e-20
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis thaliana GN=At1g66810 PE=2 SV=1 Back     alignment and function desciption
 Score =  240 bits (613), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 136/277 (49%), Positives = 171/277 (61%), Gaps = 20/277 (7%)

Query: 33  FDFDFDFDFDVDFSSIYNSVFPPRSSLSPSLITDD---RHRMATEHRLQQARLILEYQQL 89
           F+     +F   F+S+YNS+F P S       +     R    TEHRL QA+LILEY +L
Sbjct: 33  FNNKHQEEFAASFASLYNSIFSPESLSPSPPSSSSPPSRVDTTTEHRLLQAKLILEYDEL 92

Query: 90  CDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFHRMTEDIPPAFAPN--- 146
            +HY+LC +RLQ++  EL++LR +N  LR  N+ LLK+I  S    +   PPA   N   
Sbjct: 93  NEHYELCLNRLQSLMTELDSLRHENDSLRFENSDLLKLIRISTSSSSSVSPPAPIHNRQF 152

Query: 147 -NVMEPNRLEKRTVLERESFPKSISVRSSGCT-------IKPKQANASSGTSRPRAQRVY 198
            + +  +R  KR   ER S PKSISVRS G             Q +  S  S   +Q+V 
Sbjct: 153 RHQISDSRSAKRNNQERNSLPKSISVRSQGYLKINHGFEASDLQTSQLSSNSVSSSQKVC 212

Query: 199 VPPGNNKREEAEEAKAVELEVYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVI 258
           V     +RE      A+ELEVY QGM KTELCNKWQETG+C YGD CQFAH   ELRPVI
Sbjct: 213 VVQTKGERE------ALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELRPVI 266

Query: 259 RHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQERI 295
           RHP+YKTEVCRM+++G +CPYGHRCHFRHSLT+QER+
Sbjct: 267 RHPRYKTEVCRMMVTGAMCPYGHRCHFRHSLTDQERM 303

Arabidopsis thaliana (taxid: 3702)
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa subsp. japonica GN=Os05g0576300 PE=2 SV=1 Back     alignment and function description
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=Os01g0645000 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana GN=At1g68200 PE=2 SV=1 Back     alignment and function description
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1 Back     alignment and function description
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis GN=zfp36l2-A PE=2 SV=1 Back     alignment and function description
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis GN=zfp36l2-B PE=2 SV=1 Back     alignment and function description
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis GN=zfp36l2 PE=2 SV=1 Back     alignment and function description
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2 PE=1 SV=3 Back     alignment and function description
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
255574314313 zinc finger protein, putative [Ricinus c 0.795 0.760 0.533 5e-75
15219751310 zinc finger CCCH domain-containing prote 0.859 0.829 0.490 5e-61
297841333327 hypothetical protein ARALYDRAFT_475777 [ 0.829 0.758 0.462 4e-60
225452124252 PREDICTED: zinc finger CCCH domain-conta 0.722 0.857 0.496 2e-54
297737756398 unnamed protein product [Vitis vinifera] 0.819 0.615 0.411 3e-53
359472655396 PREDICTED: zinc finger CCCH domain-conta 0.819 0.618 0.411 4e-53
449467473351 PREDICTED: zinc finger CCCH domain-conta 0.923 0.786 0.406 5e-53
326510811338 predicted protein [Hordeum vulgare subsp 0.735 0.650 0.467 1e-52
414881223352 TPA: hypothetical protein ZEAMMB73_09978 0.745 0.633 0.496 2e-51
226501578351 uncharacterized protein LOC100273982 [Ze 0.745 0.635 0.490 5e-51
>gi|255574314|ref|XP_002528071.1| zinc finger protein, putative [Ricinus communis] gi|223532532|gb|EEF34321.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  286 bits (733), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 153/287 (53%), Positives = 193/287 (67%), Gaps = 49/287 (17%)

Query: 41  FDVDFSSIYNSVFPPRSSLSPSLITDDRHRMAT---------EHRLQQARLILEYQQLCD 91
           F  DF+++Y+S+FPP+    PS ++      +T         E+RLQQA LILEYQ+LCD
Sbjct: 39  FATDFTTLYHSIFPPKPPALPSSLSFSLTPSSTSSASATDDTEYRLQQASLILEYQELCD 98

Query: 92  HYDLCFSRLQAITRELETLRQQNADLRLANARLLKIIT-GSFHRMTEDIPPAFAPNNVME 150
           HYDLC SRLQ++++E+++LRQ+NADLRL N  LL++++  S H   E          + E
Sbjct: 99  HYDLCLSRLQSLSKEIDSLRQENADLRLVNNDLLRLLSISSIHNRRE----------IAE 148

Query: 151 PNRLEKRTVLERESFPKSISVRSSG-CTIKPKQANASSGTSRP----------------R 193
           P+R E+R   ER   PKSISVRSSG   + P    ASS ++RP                +
Sbjct: 149 PSRFERRNNTERVMLPKSISVRSSGYLKLNPA---ASSSSTRPLLASHNLDQLISGSVHQ 205

Query: 194 AQRVYVPPGN-----NKREEAEEAKAVELEVYNQGMWKTELCNKWQETGSCPYGDYCQFA 248
            QRV V  G      NKREEA    AVE+EVYNQGMWKTELCNKWQETG CPYGD+CQFA
Sbjct: 206 QQRVRVAGGGGGGGGNKREEA----AVEMEVYNQGMWKTELCNKWQETGMCPYGDHCQFA 261

Query: 249 HDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQERI 295
           H  TELRPVIRHP+YKT+VCRMV++G +CPYGHRCHFRHSL++QER+
Sbjct: 262 HGITELRPVIRHPRYKTQVCRMVVAGEVCPYGHRCHFRHSLSDQERL 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15219751|ref|NP_176853.1| zinc finger CCCH domain-containing protein 14 [Arabidopsis thaliana] gi|75262243|sp|Q9C9N3.1|C3H14_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=AtC3H14 gi|12597770|gb|AAG60083.1|AC013288_17 C-x8-C-x5-C-x3-H type Zinc finger protein, putative [Arabidopsis thaliana] gi|332196437|gb|AEE34558.1| zinc finger CCCH domain-containing protein 14 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297841333|ref|XP_002888548.1| hypothetical protein ARALYDRAFT_475777 [Arabidopsis lyrata subsp. lyrata] gi|297334389|gb|EFH64807.1| hypothetical protein ARALYDRAFT_475777 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225452124|ref|XP_002281139.1| PREDICTED: zinc finger CCCH domain-containing protein 15-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737756|emb|CBI26957.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359472655|ref|XP_002282967.2| PREDICTED: zinc finger CCCH domain-containing protein 15 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449467473|ref|XP_004151447.1| PREDICTED: zinc finger CCCH domain-containing protein 15-like [Cucumis sativus] gi|449521453|ref|XP_004167744.1| PREDICTED: zinc finger CCCH domain-containing protein 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|326510811|dbj|BAJ91753.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|414881223|tpg|DAA58354.1| TPA: hypothetical protein ZEAMMB73_099784 [Zea mays] Back     alignment and taxonomy information
>gi|226501578|ref|NP_001141840.1| uncharacterized protein LOC100273982 [Zea mays] gi|194706136|gb|ACF87152.1| unknown [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
TAIR|locus:2033384310 AT1G66810 [Arabidopsis thalian 0.809 0.780 0.469 4.9e-53
TAIR|locus:2199352308 AT1G68200 [Arabidopsis thalian 0.484 0.470 0.533 8.5e-43
UNIPROTKB|A7MB98 338 ZFP36L1 "Uncharacterized prote 0.250 0.221 0.546 4.3e-23
UNIPROTKB|E2R2W0 338 ZFP36L1 "Uncharacterized prote 0.250 0.221 0.546 4.3e-23
UNIPROTKB|G3V2D5176 ZFP36L1 "Zinc finger protein 3 0.250 0.426 0.546 4.3e-23
UNIPROTKB|G3V2P5207 ZFP36L1 "Zinc finger protein 3 0.250 0.362 0.546 4.3e-23
UNIPROTKB|Q07352 338 ZFP36L1 "Zinc finger protein 3 0.250 0.221 0.546 4.3e-23
UNIPROTKB|I3LB77 338 ZFP36L1 "Uncharacterized prote 0.250 0.221 0.546 4.3e-23
MGI|MGI:107946 338 Zfp36l1 "zinc finger protein 3 0.250 0.221 0.546 4.3e-23
RGD|62009 338 Zfp36l1 "zinc finger protein 3 0.250 0.221 0.546 4.3e-23
TAIR|locus:2033384 AT1G66810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 123/262 (46%), Positives = 154/262 (58%)

Query:    48 IYNSVFPPRS-SLSPSLITDDRHRM--ATEHRLQQARLILEYQQLCDHYDLCFSRLQAIT 104
             +YNS+F P S S SP   +    R+   TEHRL QA+LILEY +L +HY+LC +RLQ++ 
Sbjct:    48 LYNSIFSPESLSPSPPSSSSPPSRVDTTTEHRLLQAKLILEYDELNEHYELCLNRLQSLM 107

Query:   105 RELETLRQQXXXXXXXXXXXXKIITGSFHRMTEDIPPAFAPN----NVMEPNRLEKRTVL 160
              EL++LR +            K+I  S    +   PPA   N    + +  +R  KR   
Sbjct:   108 TELDSLRHENDSLRFENSDLLKLIRISTSSSSSVSPPAPIHNRQFRHQISDSRSAKRNNQ 167

Query:   161 ERESFPKSISVRSSGCT-------IKPKQANASSGTSRPRAQRVYVPPGNNKRXXXXXXX 213
             ER S PKSISVRS G             Q +  S  S   +Q+V V     +R       
Sbjct:   168 ERNSLPKSISVRSQGYLKINHGFEASDLQTSQLSSNSVSSSQKVCVVQTKGEREALELEV 227

Query:   214 XXXXXXYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLS 273
                   Y QGM KTELCNKWQETG+C YGD CQFAH   ELRPVIRHP+YKTEVCRM+++
Sbjct:   228 ------YRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVT 281

Query:   274 GGICPYGHRCHFRHSLTEQERI 295
             G +CPYGHRCHFRHSLT+QER+
Sbjct:   282 GAMCPYGHRCHFRHSLTDQERM 303
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2199352 AT1G68200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A7MB98 ZFP36L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2W0 ZFP36L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3V2D5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3V2P5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q07352 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LB77 ZFP36L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:107946 Zfp36l1 "zinc finger protein 36, C3H type-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|62009 Zfp36l1 "zinc finger protein 36, C3H type-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C9N3C3H14_ARATHNo assigned EC number0.49090.85950.8290yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT1G66810
zinc finger (CCCH-type) family protein; zinc finger (CCCH-type) family protein; FUNCTIONS IN- zinc ion binding, nucleic acid binding; INVOLVED IN- biological_process unknown; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Zinc finger, CCCH-type (InterPro-IPR000571); BEST Arabidopsis thaliana protein match is- zinc finger (CCCH-type) family protein (TAIR-AT1G68200.2); Has 729 Blast hits to 673 proteins in 125 species- Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 71; Plants - 103; Viruses - 0; Other Eukaryotes - 211 (source- NCBI BLink). (310 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
ZFN1
ZFN1 (ZINC FINGER PROTEIN 1); DNA binding / nuclease/ nucleic acid binding; Encodes a zinc fing [...] (397 aa)
      • 0.786
PAB8
PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor; polyadenylate-bi [...] (671 aa)
      • 0.690
AT5G12440
nucleic acid binding / nucleotide binding / zinc ion binding; nucleic acid binding / nucleotide [...] (650 aa)
      • 0.679
AT3G51180
zinc finger (CCCH-type) family protein; zinc finger (CCCH-type) family protein; FUNCTIONS IN- n [...] (521 aa)
      • 0.679
AT2G16485
DNA binding / nucleic acid binding / protein binding / zinc ion binding; DNA binding / nucleic [...] (1773 aa)
      • 0.679
AT1G19860
zinc finger (CCCH-type) family protein; zinc finger (CCCH-type) family protein; FUNCTIONS IN- z [...] (413 aa)
      • 0.679
DCP2
DCP2 (DECAPPING 2); hydrolase/ m7G(5')pppN diphosphatase/ mRNA binding / protein homodimerizati [...] (373 aa)
      • 0.677
LBA1
LBA1 (LOW-LEVEL BETA-AMYLASE 1); ATP binding / DNA binding / RNA helicase/ hydrolase; Required [...] (1254 aa)
      • 0.659
BZO2H1
BZO2H1; DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription [...] (417 aa)
      • 0.657
HUA1
HUA1 (ENHANCER OF AG-4 1); RNA binding; Member of the floral homeotic AGAMOUS pathway. ; Involv [...] (524 aa)
      • 0.627

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
COG5063 351 COG5063, CTH1, CCCH-type Zn-finger protein [Genera 1e-09
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 2e-09
COG5063351 COG5063, CTH1, CCCH-type Zn-finger protein [Genera 8e-09
COG5063351 COG5063, CTH1, CCCH-type Zn-finger protein [Genera 3e-06
smart0035627 smart00356, ZnF_C3H1, zinc finger 1e-05
smart0035627 smart00356, ZnF_C3H1, zinc finger 1e-04
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 5e-04
>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information 
 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 24/66 (36%), Positives = 30/66 (45%)

Query: 222 QGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGH 281
            G++KTE+     E   C Y D   FAH          HPKYKTE   + ++ G  PY  
Sbjct: 110 YGLYKTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQTHPKYKTESLEVFINPGYVPYSK 169

Query: 282 RCHFRH 287
           RC F  
Sbjct: 170 RCCFIS 175

Length = 351
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 299
KOG1677 332 consensus CCCH-type Zn-finger protein [General fun 99.53
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.94
KOG2333 614 consensus Uncharacterized conserved protein [Gener 98.76
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.61
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.53
KOG1595 528 consensus CCCH-type Zn-finger protein [General fun 98.5
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.21
KOG1040 325 consensus Polyadenylation factor I complex, subuni 98.19
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 98.17
smart0035627 ZnF_C3H1 zinc finger. 97.99
KOG2494 331 consensus C3H1-type Zn-finger protein [Transcripti 97.86
smart0035627 ZnF_C3H1 zinc finger. 97.73
KOG1763 343 consensus Uncharacterized conserved protein, conta 97.72
KOG1595 528 consensus CCCH-type Zn-finger protein [General fun 97.7
COG5252 299 Uncharacterized conserved protein, contains CCCH-t 97.07
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 96.88
COG5084 285 YTH1 Cleavage and polyadenylation specificity fact 96.66
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 96.11
KOG2185 486 consensus Predicted RNA-processing protein, contai 95.96
COG5152259 Uncharacterized conserved protein, contains RING a 95.7
KOG1040 325 consensus Polyadenylation factor I complex, subuni 95.59
KOG2185 486 consensus Predicted RNA-processing protein, contai 95.32
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 94.4
COG5152259 Uncharacterized conserved protein, contains RING a 94.38
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 94.3
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 93.93
KOG4791 667 consensus Uncharacterized conserved protein [Funct 91.08
KOG4791 667 consensus Uncharacterized conserved protein [Funct 90.57
PF07407 420 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: 90.26
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 90.16
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 89.18
KOG2494 331 consensus C3H1-type Zn-finger protein [Transcripti 86.03
PF1477560 NYD-SP28_assoc: Sperm tail C-terminal domain 85.76
PRK13169110 DNA replication intiation control protein YabA; Re 85.31
KOG1039 344 consensus Predicted E3 ubiquitin ligase [Posttrans 84.93
PRK00888105 ftsB cell division protein FtsB; Reviewed 83.93
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 83.1
KOG2202260 consensus U2 snRNP splicing factor, small subunit, 82.15
KOG3650120 consensus Predicted coiled-coil protein [General f 81.96
KOG1763 343 consensus Uncharacterized conserved protein, conta 80.12
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=99.53  E-value=5.1e-15  Score=138.61  Aligned_cols=74  Identities=42%  Similarity=0.907  Sum_probs=67.0

Q ss_pred             CCCcccccCccccccCCcCc-cccccccccCCCcc------ccccCCCccccccccccCccccCCCCCCccCCCCCccCc
Q 022289          222 QGMWKTELCNKWQETGSCPY-GDYCQFAHDFTELR------PVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQER  294 (299)
Q Consensus       222 q~kyKTeLCr~F~~~G~C~y-GDrCrFAH~~~ELR------~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elrr  294 (299)
                      ...+||.+|.+|...|.|+| |++|+|+|+.++++      ....+++|||++|..|.++|.|+||.+|+|.|+..+...
T Consensus       127 p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~  206 (332)
T KOG1677|consen  127 PERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRA  206 (332)
T ss_pred             cccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccc
Confidence            34899999999999999999 99999999999999      345688999999999999999999999999999887654


Q ss_pred             C
Q 022289          295 I  295 (299)
Q Consensus       295 ~  295 (299)
                      .
T Consensus       207 ~  207 (332)
T KOG1677|consen  207 S  207 (332)
T ss_pred             c
Confidence            4

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
1rgo_A70 Structural Basis For Recognition Of The Mrna Class 8e-19
1m9o_A77 Nmr Structure Of The First Zinc Binding Domain Of N 1e-16
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au- Rich Element By The Tandem Zinc Finger Domain Of Tis11d Length = 70 Back     alignment and structure 
Iteration: 1

 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 50/67 (74%)
Query: 225 WKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCH 284
           +KTELC  ++E+G+C YG+ CQFAH F ELR + RHPKYKTE+CR   + G CPYG RCH
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 63
Query: 285 FRHSLTE 291
           F H+  E
Sbjct: 64  FIHNADE 70
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of Nup475TTPTIS11 Length = 77 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 2e-26
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 9e-09
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 2e-08
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 7e-10
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 1e-09
2rhk_C72 Cleavage and polyadenylation specificity factor su 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
 Score = 98.5 bits (245), Expect = 2e-26
 Identities = 39/71 (54%), Positives = 44/71 (61%)

Query: 221 NQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYG 280
               +KTELC  + E+G C YG  CQFAH   ELR   RHPKYKTE+C      G CPYG
Sbjct: 6   TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYG 65

Query: 281 HRCHFRHSLTE 291
            RCHF H+ TE
Sbjct: 66  SRCHFIHNPTE 76
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.77
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.32
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.31
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.17
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 99.12
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.97
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.74
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.54
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 98.39
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 98.09
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 97.91
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 97.02
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 96.99
2rhk_C72 Cleavage and polyadenylation specificity factor su 96.83
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 96.37
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 96.18
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 96.16
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 95.71
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 95.48
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 95.27
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 95.17
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 94.08
3s9g_A104 Protein hexim1; cyclin T-binding domain (TBD), cyc 93.24
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 91.54
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 91.52
3u1l_A 240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 90.97
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 89.62
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 82.69
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
Probab=99.77  E-value=1e-19  Score=137.18  Aligned_cols=72  Identities=54%  Similarity=1.046  Sum_probs=35.7

Q ss_pred             ccCCCcccccCccccccCCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCc
Q 022289          220 YNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTE  291 (299)
Q Consensus       220 ~~q~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~e  291 (299)
                      .++.++||++|++|+..|.|++|++|+|+|+..+++....+|.+++.+|++|...|.|++|.+|+|+|+..+
T Consensus         5 ~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            5 TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             CCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred             CCCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            456789999999998899999999999999999999877788899999998888899999999999999765
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 299
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 1e-13
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 3e-11
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 1e-13
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 2e-09
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 2e-12
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 2e-09
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (151), Expect = 1e-13
 Identities = 21/33 (63%), Positives = 24/33 (72%)

Query: 259 RHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTE 291
           RHPKYKTE+CR   + G CPYG RCHF H+  E
Sbjct: 2   RHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 34
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 99.18
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 99.16
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 99.07
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.94
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.89
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.81
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.36
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.17
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 96.83
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 94.85
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 94.79
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 87.57
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2e-12  Score=85.73  Aligned_cols=34  Identities=56%  Similarity=1.168  Sum_probs=31.7

Q ss_pred             CCcccccCccccccCCcCccccccccccCCCccc
Q 022289          223 GMWKTELCNKWQETGSCPYGDYCQFAHDFTELRP  256 (299)
Q Consensus       223 ~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~  256 (299)
                      .+|||+||++|...|.|++|++|+|||+.+|||+
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            4899999999998899999999999999999985
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure