Citrus Sinensis ID: 022290

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
ccccccEEccEEEEcccccccEEEEccccEEEEEEEEccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccEEEEEEEEcccccccEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccEEEccccccccccccccccccccccccccccccccc
MRKHKWKVRILsefcpanpsllginigggaevklrlrrpnrewdffpyEQILDTMLHELchneygphnadfYKLWDEIRKECDELMAKgitgtgkgfdlpgrrlggfsrqpplsQLRQSALAAAENRArhgallpsgpnriggdssiKAALSPIQAAAMAAERRLhddmwcgskslnsdidvredvgsstdasessktssvsnnrsgqtsslqpssgqkavdVGQMWQCnmctllnqplaltceacgtqrnksvgnlkgwsckfctldnsslSERCLacgewrysngppistpgpypgt
MRKHKWKVRILSefcpanpsllginiGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARhgallpsgpnriGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGsstdasessktssvsnnrsgqtsslqpssgQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKsvgnlkgwsCKFCTLDNSSLSERCLACGEwrysngppistpgpypgt
MRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPlsqlrqsalaaaENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGsstdasessktssvsnnrsGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
*****WKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDL*********************************************************************MWC*************************************************VDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRY***************
***HKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTG************************************************************************DDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQ**S*QKAVDVGQMWQCN*C********************************CTLDNSSLSERCLA*********************
MRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVR**************************************DVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
***HKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENR***************************************************************************************************WQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGE******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query299 2.2.26 [Sep-21-2011]
P38838269 DNA damage response prote yes no 0.612 0.680 0.358 9e-24
O94580282 Ubiquitin and WLM domain- yes no 0.274 0.290 0.386 2e-10
Q9P7B5283 DNA damage response prote no no 0.307 0.325 0.357 1e-07
P27398 1594 Calpain-D OS=Drosophila m no no 0.190 0.035 0.369 7e-05
>sp|P38838|WSS1_YEAST DNA damage response protein WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/198 (35%), Positives = 102/198 (51%), Gaps = 15/198 (7%)

Query: 1   MRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELC 60
           M+++ +KV  L EF P +  LLG+N+  G+++ LRLR    E+ F P E I+ TMLHEL 
Sbjct: 59  MKENHFKVTNLVEFYPRDQRLLGMNVNHGSKIMLRLRCSTDEFQFLPMECIMGTMLHELT 118

Query: 61  HNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFS-----RQPPLSQ 115
           HN +GPH+  FY   DE+      +  +G+  T  G    G+RLGG +     R P    
Sbjct: 119 HNLFGPHDKKFYNKLDELIGRQWVIEQRGLYDTFLG---NGQRLGGRANLRSNRYPMTGI 175

Query: 116 LRQSALAAAENR-ARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSK 174
              + +     +  + G+L P G       SSI    SP + AA AAERR  DD WCG  
Sbjct: 176 STNTGIVRKRGKGVKLGSLHPEGI------SSIDRGNSPRELAAFAAERRYRDDRWCGET 229

Query: 175 SLNSDIDVREDVGSSTDA 192
             N D  + +++ SS + 
Sbjct: 230 KNNKDQIISDNISSSLEV 247
Involved in DNA damage response and processing of stalled or collapsed replication forks. May be involved in a sumoylation pathway.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing protein C1442.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1442.07c PE=4 SV=1 Back     alignment and function description
>sp|Q9P7B5|WSS1_SCHPO DNA damage response protein wss1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wss1 PE=3 SV=1 Back     alignment and function description
>sp|P27398|CAND_DROME Calpain-D OS=Drosophila melanogaster GN=sol PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
255564031326 conserved hypothetical protein [Ricinus 0.963 0.883 0.726 1e-124
224097470331 predicted protein [Populus trichocarpa] 0.959 0.867 0.711 1e-118
225461874366 PREDICTED: DNA damage response protein W 0.986 0.806 0.597 1e-108
224116656388 predicted protein [Populus trichocarpa] 1.0 0.770 0.538 1e-97
413952857346 putative uncharacterized protein hypro4 0.979 0.846 0.570 7e-93
218197734352 hypothetical protein OsI_21977 [Oryza sa 0.983 0.835 0.557 2e-88
297847960 401 zinc ion binding protein [Arabidopsis ly 1.0 0.745 0.493 4e-88
51091111352 unknown protein [Oryza sativa Japonica G 0.983 0.835 0.554 2e-87
297605345 400 Os06g0191200 [Oryza sativa Japonica Grou 0.983 0.735 0.554 2e-87
168251062339 hypothetical protein 4 [Zea mays] 0.949 0.837 0.553 4e-87
>gi|255564031|ref|XP_002523014.1| conserved hypothetical protein [Ricinus communis] gi|223537736|gb|EEF39356.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/292 (72%), Positives = 243/292 (83%), Gaps = 4/292 (1%)

Query: 1   MRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELC 60
           MR H WKVRILSEFCP+NPSL+G+NIGGGAE+KLRLRRPN EWDFFPYEQ+LDTMLHELC
Sbjct: 39  MRNHHWKVRILSEFCPSNPSLMGLNIGGGAEIKLRLRRPNCEWDFFPYEQVLDTMLHELC 98

Query: 61  HNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSA 120
           HN+YGPHNADFY L D+IRKEC+EL+AKGITGTG+GFDLPGR LGGFSRQPPLS +RQ+A
Sbjct: 99  HNQYGPHNADFYNLLDQIRKECEELIAKGITGTGQGFDLPGRCLGGFSRQPPLSSMRQTA 158

Query: 121 LAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDI 180
           LAAAENRAR GA+LPSGP R+GGD +IK ALSP+QAAAMAAERRLHDD+WCGSKSL    
Sbjct: 159 LAAAENRARRGAVLPSGPQRVGGDGNIKTALSPVQAAAMAAERRLHDDLWCGSKSLEGIS 218

Query: 181 DVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLA 240
           D++E+V    +AS  S  S      S +TS    ++GQK VD    WQC+MCTLLNQPL 
Sbjct: 219 DLKENV----EASSKSNISITFEGVSSRTSPRGQTTGQKPVDDHPQWQCHMCTLLNQPLV 274

Query: 241 LTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPIST 292
           L CEACG +R+KS+ N K WSCKFCTL+NS   ERC+ACGEWRYS GPP+ST
Sbjct: 275 LICEACGPERSKSIANFKVWSCKFCTLENSVELERCIACGEWRYSYGPPVST 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224097470|ref|XP_002310948.1| predicted protein [Populus trichocarpa] gi|222850768|gb|EEE88315.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225461874|ref|XP_002264382.1| PREDICTED: DNA damage response protein WSS1 [Vitis vinifera] gi|296089891|emb|CBI39710.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224116656|ref|XP_002317357.1| predicted protein [Populus trichocarpa] gi|222860422|gb|EEE97969.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|413952857|gb|AFW85506.1| putative uncharacterized protein hypro4 [Zea mays] Back     alignment and taxonomy information
>gi|218197734|gb|EEC80161.1| hypothetical protein OsI_21977 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|297847960|ref|XP_002891861.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297337703|gb|EFH68120.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|51091111|dbj|BAD35808.1| unknown protein [Oryza sativa Japonica Group] gi|215706950|dbj|BAG93410.1| unnamed protein product [Oryza sativa Japonica Group] gi|222635111|gb|EEE65243.1| hypothetical protein OsJ_20413 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|297605345|ref|NP_001057027.2| Os06g0191200 [Oryza sativa Japonica Group] gi|255676805|dbj|BAF18941.2| Os06g0191200, partial [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|168251062|gb|ACA21845.1| hypothetical protein 4 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
TAIR|locus:505006190404 AT1G55915 [Arabidopsis thalian 0.832 0.616 0.514 1.2e-65
UNIPROTKB|G4MYN3 483 MGG_01341 "Uncharacterized pro 0.585 0.362 0.342 1.6e-28
ASPGD|ASPL0000062736336 AN0304 [Emericella nidulans (t 0.568 0.505 0.393 1.7e-27
SGD|S000001176269 WSS1 "Sumoylated protein local 0.612 0.680 0.354 6.1e-23
CGD|CAL0004104306 orf19.291 [Candida albicans (t 0.297 0.290 0.359 6.5e-15
UNIPROTKB|Q5AEH7306 CaO19.291 "Putative uncharacte 0.297 0.290 0.359 6.5e-15
POMBASE|SPCC1442.07c282 SPCC1442.07c "ubiquitin/metall 0.290 0.308 0.378 5.9e-10
TAIR|locus:2177286 603 AT5G35690 [Arabidopsis thalian 0.321 0.159 0.377 8.2e-09
POMBASE|SPAC521.02283 SPAC521.02 "WLM domain protein 0.307 0.325 0.357 3.1e-07
UNIPROTKB|J9NVT7 1072 SOLH "Uncharacterized protein" 0.123 0.034 0.486 4.9e-05
TAIR|locus:505006190 AT1G55915 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 139/270 (51%), Positives = 169/270 (62%)

Query:     1 MRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELC 60
             M + KW+V++LSEFCP NP LLG+N+  G +VKLRLRR N + DF  Y +ILDTMLHELC
Sbjct:    42 MTRRKWRVKLLSEFCPTNPRLLGVNVNRGVQVKLRLRRVNHDLDFLSYHEILDTMLHELC 101

Query:    61 HNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPXXXXXXXX 120
             HN +GPHNA FYKLWDE+RKEC+ELM+KGITGTG+GFD+PG+RLGG SRQP         
Sbjct:   102 HNAHGPHNASFYKLWDELRKECEELMSKGITGTGQGFDMPGKRLGGLSRQPSLSFLRATA 161

Query:   121 XXXXENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNS-- 178
                 E R R G LLPSGP R+GGDSSI + LSPIQAAAMAAERRL DD+WCGS+S ++  
Sbjct:   162 ATAAEKRVRAGTLLPSGPQRLGGDSSIMSDLSPIQAAAMAAERRLLDDIWCGSQSTDALE 221

Query:   179 ----DIDV-REDVGXXXXXXXXXXXXXXXXXXXGQTSSLQPSSG-QKAVDVGQMWQCNMC 232
                 D D  +E V                        S  PSS  Q+  DV         
Sbjct:   222 DEENDSDTYKEPVSIRETCTSVNGKSVKRCNSWSNAHSCPPSSSHQQGSDV--------I 273

Query:   233 TLLNQPLALTCEACGTQRNKSVGNLKGWSC 262
              L  +   + C    T+RN+S G+ +G SC
Sbjct:   274 DLTEESFEIRC----TKRNRSPGD-QGPSC 298
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
UNIPROTKB|G4MYN3 MGG_01341 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062736 AN0304 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000001176 WSS1 "Sumoylated protein localizing to the nuclear periphery of mother cells" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0004104 orf19.291 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AEH7 CaO19.291 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
POMBASE|SPCC1442.07c SPCC1442.07c "ubiquitin/metalloprotease fusion protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2177286 AT5G35690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC521.02 SPAC521.02 "WLM domain protein" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|J9NVT7 SOLH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00080073
hypothetical protein (331 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
pfam08325183 pfam08325, WLM, WLM domain 2e-61
>gnl|CDD|219796 pfam08325, WLM, WLM domain Back     alignment and domain information 
 Score =  192 bits (490), Expect = 2e-61
 Identities = 72/165 (43%), Positives = 96/165 (58%), Gaps = 15/165 (9%)

Query: 1   MRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELC 60
           M++H+W+V +L+EF P N  LLG+N+  G  ++LRLR P+ +  F P+E I+ T+LHEL 
Sbjct: 33  MKEHRWRVGLLTEFYPRNARLLGLNVNKGEVIELRLRTPSDDGGFLPFESIMGTLLHELA 92

Query: 61  HNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSA 120
           HN +GPH+  FY L DE+RKE +EL A+G      GF   GRRLGG              
Sbjct: 93  HNVHGPHDRKFYALLDELRKEVEELDARGYD----GFLSSGRRLGGRGSYNSA------- 141

Query: 121 LAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRL 165
               E R   G  L  G  R+GGDS  ++  S  + AA AAERRL
Sbjct: 142 ----EGRELGGNGLSGGGERLGGDSLSRSGESARELAAAAAERRL 182

This is a predicted metallopeptidase domain called WLM (Wss1p-like metalloproteases). These are linked to the Ub-system by virtue of fusions with the UB-binding PUG (PUB), Ub-like, and Little Finger domains. More specifically, genetic evidence implicates the WLM family in de-SUMOylation. Length = 183

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 299
PF08325186 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1 100.0
KOG4842278 consensus Protein involved in sister chromatid sep 99.76
PF01863205 DUF45: Protein of unknown function DUF45; InterPro 99.57
COG1451223 Predicted metal-dependent hydrolase [General funct 99.29
KOG4842278 consensus Protein involved in sister chromatid sep 99.21
PF0064130 zf-RanBP: Zn-finger in Ran binding protein and oth 98.36
PF0064130 zf-RanBP: Zn-finger in Ran binding protein and oth 98.3
smart00731146 SprT SprT homologues. Predicted to have roles in t 98.13
KOG4198280 consensus RNA-binding Ran Zn-finger protein and re 98.11
smart0054726 ZnF_RBZ Zinc finger domain. Zinc finger domain in 97.72
smart0054726 ZnF_RBZ Zinc finger domain. Zinc finger domain in 97.63
PF10263157 SprT-like: SprT-like family; InterPro: IPR006640 T 97.35
PF1277350 DZR: Double zinc ribbon 97.12
KOG4198280 consensus RNA-binding Ran Zn-finger protein and re 97.09
KOG4477 228 consensus RING1 interactor RYBP and related Zn-fin 96.14
PRK04351149 hypothetical protein; Provisional 96.0
KOG4477 228 consensus RING1 interactor RYBP and related Zn-fin 95.95
PRK14559 645 putative protein serine/threonine phosphatase; Pro 95.93
COG3091156 SprT Zn-dependent metalloprotease, SprT family [Ge 95.4
PRK04860160 hypothetical protein; Provisional 94.89
KOG4345 774 consensus NF-kappa B regulator AP20/Cezanne [Signa 94.32
KOG4345 774 consensus NF-kappa B regulator AP20/Cezanne [Signa 92.73
PF13485128 Peptidase_MA_2: Peptidase MA superfamily 91.97
cd0035033 rubredoxin_like Rubredoxin_like; nonheme iron bind 90.34
PF06114122 DUF955: Domain of unknown function (DUF955); Inter 90.29
PF1324826 zf-ribbon_3: zinc-ribbon domain 89.62
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 89.12
COG4219337 MecR1 Antirepressor regulating drug resistance, pr 88.3
PF08325186 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1 88.17
PF05569299 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0 87.81
PF1324826 zf-ribbon_3: zinc-ribbon domain 87.21
KOG3931 484 consensus Uncharacterized conserved protein [Funct 87.14
COG0501302 HtpX Zn-dependent protease with chaperone function 87.01
PF1324023 zinc_ribbon_2: zinc-ribbon domain 86.94
cd04270244 ZnMc_TACE_like Zinc-dependent metalloprotease; TAC 86.8
cd0072934 rubredoxin_SM Rubredoxin, Small Modular nonheme ir 86.47
PRK02870336 heat shock protein HtpX; Provisional 85.54
PRK04897298 heat shock protein HtpX; Provisional 85.51
PRK03072288 heat shock protein HtpX; Provisional 85.48
PF12388211 Peptidase_M57: Dual-action HEIGH metallo-peptidase 84.33
PRK03982288 heat shock protein HtpX; Provisional 84.21
PRK14714 1337 DNA polymerase II large subunit; Provisional 83.53
PF01435226 Peptidase_M48: Peptidase family M48 This is family 83.2
PRK05457284 heat shock protein HtpX; Provisional 83.05
PRK03001283 M48 family peptidase; Provisional 83.0
PRK02391296 heat shock protein HtpX; Provisional 82.59
PRK01345317 heat shock protein HtpX; Provisional 82.49
PRK01265324 heat shock protein HtpX; Provisional 81.29
PF1324023 zinc_ribbon_2: zinc-ribbon domain 80.59
KOG3854505 consensus SPRT-like metalloprotease [Function unkn 80.58
cd0073050 rubredoxin Rubredoxin; nonheme iron binding domain 80.1
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase Back     alignment and domain information 
Probab=100.00  E-value=8.2e-43  Score=310.01  Aligned_cols=150  Identities=56%  Similarity=0.893  Sum_probs=133.2

Q ss_pred             CCCCccEeeeecccCCCCCCccceecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHH
Q 022290            1 MRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRK   80 (299)
Q Consensus         1 Mr~~~w~V~~L~E~~P~~~~llGlN~n~G~~I~LrLR~~~~~~~f~p~~~i~~v~lHELaH~~~~~H~~~F~~l~~~l~~   80 (299)
                      |++|+|+|++|+||+|.+..+||+|+|+|++|.||||.+++ ..|+||+.|.+|||||||||+|++||++||+++++|..
T Consensus        33 M~~~~~~V~~L~E~~P~~~~llG~N~N~G~~I~lrLR~~~~-~~fl~~~~i~~t~lHELaH~~~~~H~~~F~~l~~~l~~  111 (186)
T PF08325_consen   33 MRKHGWRVGSLEEFYPNGERLLGLNVNKGEKICLRLRTPDD-GGFLPYETILGTMLHELAHNVHGPHDDKFWKLLDELRK  111 (186)
T ss_pred             HHHcCcccCeeeccCCCCCCCcceecCCCcEEEEEeCCCCC-CCEeeHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999998 89999999999999999999999999999999999999


Q ss_pred             HHHHHHHccccCCCCcccCCCCccCCCCCCCCchHHHHHHHHHHHHHhhhCCcCCCCCccccCCCCc----CCCCCHHHH
Q 022290           81 ECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSI----KAALSPIQA  156 (299)
Q Consensus        81 e~~~l~~~G~~g~g~gf~~~G~rLGG~~~~~~~~~~r~~a~~aaekr~~~~~~~~~g~~~LGg~~~~----~~~~~~re~  156 (299)
                      |++.|+++||+   +||++.|++|||.....+            +.+......+.+++++|||++..    .+..++||+
T Consensus       112 e~~~l~~~G~~---~gf~~~G~~l~~~~~~~~------------~~~~~~~~~~~~~~~~LgG~s~~~~~~~~~~~~Re~  176 (186)
T PF08325_consen  112 ECEELDAKGYT---EGFWSSGRRLGGSSGQPS------------EERELRGNGLSGGGQRLGGGSSSRPRKAQPKSPREA  176 (186)
T ss_pred             HHHHHHhcCCc---cccCCCCcccCCCCcccc------------hhhhhhccccCCCCeeCCCCCCCCCCcCCCcCHHHH
Confidence            99999999998   899999999999755432            11111123366778999998752    568899999


Q ss_pred             HHHHHHHHhh
Q 022290          157 AAMAAERRLH  166 (299)
Q Consensus       157 ~a~AAerR~~  166 (299)
                      +|+|||||++
T Consensus       177 ~a~AAerR~~  186 (186)
T PF08325_consen  177 AAAAAERRLR  186 (186)
T ss_pred             HHHHHHhhcC
Confidence            9999999985

Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori Back     alignment and domain information
>COG1451 Predicted metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00731 SprT SprT homologues Back     alignment and domain information
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only] Back     alignment and domain information
>smart00547 ZnF_RBZ Zinc finger domain Back     alignment and domain information
>smart00547 ZnF_RBZ Zinc finger domain Back     alignment and domain information
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT) Back     alignment and domain information
>PF12773 DZR: Double zinc ribbon Back     alignment and domain information
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only] Back     alignment and domain information
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription] Back     alignment and domain information
>PRK04351 hypothetical protein; Provisional Back     alignment and domain information
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription] Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only] Back     alignment and domain information
>PRK04860 hypothetical protein; Provisional Back     alignment and domain information
>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms] Back     alignment and domain information
>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms] Back     alignment and domain information
>PF13485 Peptidase_MA_2: Peptidase MA superfamily Back     alignment and domain information
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center Back     alignment and domain information
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function Back     alignment and domain information
>PF13248 zf-ribbon_3: zinc-ribbon domain Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase Back     alignment and domain information
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13248 zf-ribbon_3: zinc-ribbon domain Back     alignment and domain information
>KOG3931 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13240 zinc_ribbon_2: zinc-ribbon domain Back     alignment and domain information
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily Back     alignment and domain information
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase Back     alignment and domain information
>PRK02870 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK04897 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03072 heat shock protein HtpX; Provisional Back     alignment and domain information
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57 Back     alignment and domain information
>PRK03982 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK14714 DNA polymerase II large subunit; Provisional Back     alignment and domain information
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification Back     alignment and domain information
>PRK05457 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03001 M48 family peptidase; Provisional Back     alignment and domain information
>PRK02391 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01345 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01265 heat shock protein HtpX; Provisional Back     alignment and domain information
>PF13240 zinc_ribbon_2: zinc-ribbon domain Back     alignment and domain information
>KOG3854 consensus SPRT-like metalloprotease [Function unknown] Back     alignment and domain information
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
3gj7_B98 Nuclear pore complex protein NUP153; G protein, GD 3e-07
3gj7_B98 Nuclear pore complex protein NUP153; G protein, GD 2e-05
3gj8_B92 Nuclear pore complex protein NUP153; G protein, GD 3e-07
3gj8_B92 Nuclear pore complex protein NUP153; G protein, GD 4e-04
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 1e-05
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
2crc_A52 Ubiquitin conjugating enzyme 7 interacting protein 4e-05
3b08_B64 Ranbp-type and C3HC4-type zinc finger-containing; 2e-04
3a9j_C34 Mitogen-activated protein kinase kinase kinase 7- 2e-04
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98 Back     alignment and structure
 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 30/84 (35%)

Query: 227 WQCNMCTLLNQPLALTCEACGTQRNKSVGNLKG--------------------------- 259
           WQC+ C L N+     C AC   +       K                            
Sbjct: 10  WQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPA 69

Query: 260 ---WSCKFCTLDNSSLSERCLACG 280
              W C  C + N   + +C+AC 
Sbjct: 70  IGTWDCDTCLVQNKPEAVKCVACE 93
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98 Back     alignment and structure
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92 Back     alignment and structure
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92 Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566 Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens} Length = 52 Back     alignment and structure
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B* Length = 64 Back     alignment and structure
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C Length = 34 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
3gj7_B98 Nuclear pore complex protein NUP153; G protein, GD 99.36
3gj8_B92 Nuclear pore complex protein NUP153; G protein, GD 99.33
3gj3_B33 Nuclear pore complex protein NUP153; G protein, GD 98.59
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 98.43
3a9j_C34 Mitogen-activated protein kinase kinase kinase 7- 98.42
2d9g_A53 YY1-associated factor 2; ZF-ranbp domain, structur 98.41
3gj3_B33 Nuclear pore complex protein NUP153; G protein, GD 98.32
1nj3_A31 NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, 98.31
3gj5_B34 Nuclear pore complex protein NUP153; G protein, GD 98.23
2crc_A52 Ubiquitin conjugating enzyme 7 interacting protein 98.22
2d9g_A53 YY1-associated factor 2; ZF-ranbp domain, structur 98.19
3a9j_C34 Mitogen-activated protein kinase kinase kinase 7- 98.18
1nj3_A31 NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, 98.15
2ebq_A47 Nuclear pore complex protein NUP153; ZF-ranbp doma 98.11
3gj5_B34 Nuclear pore complex protein NUP153; G protein, GD 98.08
2crc_A52 Ubiquitin conjugating enzyme 7 interacting protein 98.01
2ebr_A47 Nuclear pore complex protein NUP153; ZF-ranbp doma 97.94
2ebv_A57 Nuclear pore complex protein NUP153; ZF-ranbp doma 97.92
3b08_B64 Ranbp-type and C3HC4-type zinc finger-containing; 97.9
2ebr_A47 Nuclear pore complex protein NUP153; ZF-ranbp doma 97.88
3b08_B64 Ranbp-type and C3HC4-type zinc finger-containing; 97.85
2ebq_A47 Nuclear pore complex protein NUP153; ZF-ranbp doma 97.82
3gj7_B98 Nuclear pore complex protein NUP153; G protein, GD 97.52
2k1p_A33 Zinc finger RAN-binding domain-containing protein 97.44
2lk0_A32 RNA-binding protein 5; zinc finger; NMR {Homo sapi 97.43
2ebv_A57 Nuclear pore complex protein NUP153; ZF-ranbp doma 97.42
3gj8_B92 Nuclear pore complex protein NUP153; G protein, GD 97.28
2k1p_A33 Zinc finger RAN-binding domain-containing protein 97.26
2lk0_A32 RNA-binding protein 5; zinc finger; NMR {Homo sapi 97.12
1n0z_A45 ZNF265; zinc finger, RNA splicing, transcription; 96.94
1n0z_A45 ZNF265; zinc finger, RNA splicing, transcription; 96.52
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 94.02
2j9u_B76 VPS36, vacuolar protein sorting-associated protein 93.03
3cqb_A107 Probable protease HTPX homolog; heat shock protein 90.89
2cr8_A53 MDM4 protein; ZF-ranbp domain, P53-binding protein 87.35
1e8j_A52 Rubredoxin; iron-sulfur-protein, zinc-substitution 85.59
6rxn_A46 Rubredoxin; electron transfer(iron-sulfur protein) 84.31
2j9u_B76 VPS36, vacuolar protein sorting-associated protein 83.63
2ddf_A257 ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapi 82.72
4rxn_A54 Rubredoxin; electron transfer(iron-sulfur protein) 80.98
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Back     alignment and structure
Probab=99.36  E-value=1.3e-13  Score=110.24  Aligned_cols=62  Identities=27%  Similarity=0.673  Sum_probs=26.2

Q ss_pred             CCCccCCccccccccCCccccccCCCCCCCC------------------------------CCCCCcccCCcccccCCCC
Q 022290          224 GQMWQCNMCTLLNQPLALTCEACGTQRNKSV------------------------------GNLKGWSCKFCTLDNSSLS  273 (299)
Q Consensus       224 ~~~W~C~~CT~~N~~~a~~C~aCgt~rp~~~------------------------------~~~~~W~C~~Ct~~N~~~~  273 (299)
                      ...|.|+.|++.|...+.+|.+|+.+|+...                              .+.+.|.|.+|++.|....
T Consensus         7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~~C~~~N~~~~   86 (98)
T 3gj7_B            7 GSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCDTCLVQNKPEA   86 (98)
T ss_dssp             ----------------------------------------------------------------CCEECTTTCCEECTTC
T ss_pred             CCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCCcCcCCChhhc
Confidence            3579999999999999999999999987421                              2457899999999999999


Q ss_pred             ccccccCCCCCC
Q 022290          274 ERCLACGEWRYS  285 (299)
Q Consensus       274 ~~C~~Cg~~r~~  285 (299)
                      .+|.+|+++|+.
T Consensus        87 ~~C~aC~tpkPg   98 (98)
T 3gj7_B           87 VKCVACETPKPG   98 (98)
T ss_dssp             SBCTTTCCBCC-
T ss_pred             ceecccCCCCCC
Confidence            999999999973
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Back     alignment and structure
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C Back     alignment and structure
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A Back     alignment and structure
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A Back     alignment and structure
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 Back     alignment and structure
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens} Back     alignment and structure
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C Back     alignment and structure
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A Back     alignment and structure
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 Back     alignment and structure
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens} Back     alignment and structure
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B* Back     alignment and structure
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B* Back     alignment and structure
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Back     alignment and structure
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A Back     alignment and structure
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A* Back     alignment and structure
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Back     alignment and structure
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A Back     alignment and structure
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A* Back     alignment and structure
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Back     alignment and structure
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1 Back     alignment and structure
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1 Back     alignment and structure
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A Back     alignment and structure
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1 Back     alignment and structure
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1 Back     alignment and structure
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ... Back     alignment and structure
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
d2gqea129 Nuclear pore complex protein nup153 {Human (Homo s 98.15
d1q5wa_31 Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]} 97.9
d2gqea129 Nuclear pore complex protein nup153 {Human (Homo s 97.81
d1q5wa_31 Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]} 97.69
d1n0za_45 Znf265, first zinc-finger domain {Human (Homo sapi 96.98
d1n0za_45 Znf265, first zinc-finger domain {Human (Homo sapi 96.43
d2j9ub147 Vacuolar protein-sorting-associated protein 36, VP 91.91
d6rxna_45 Rubredoxin {Desulfovibrio desulfuricans, strain 27 87.62
d1nnqa237 Rubrerythrin, C-terminal domain {Archaeon Pyrococc 86.41
d2i47a1254 TNF-alpha converting enzyme, TACE, catalytic domai 84.47
d1yuza236 Nigerythrin, C-terminal domain {Desulfovibrio vulg 84.42
d1kufa_201 Snake venom metalloprotease {Taiwan habu (Trimeres 82.38
d1nd1a_202 Snake venom metalloprotease {Terciopelo (Bothrops 82.01
d1quaa_197 Snake venom metalloprotease {Chinese five-pace sna 81.37
d2dsxa152 Rubredoxin {Desulfovibrio gigas [TaxId: 879]} 80.9
d1atla_200 Snake venom metalloprotease {Western diamonback ra 80.39
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=3.9e-07  Score=55.73  Aligned_cols=27  Identities=37%  Similarity=0.977  Sum_probs=23.7

Q ss_pred             CCccCCccccccccCCccccccCCCCC
Q 022290          225 QMWQCNMCTLLNQPLALTCEACGTQRN  251 (299)
Q Consensus       225 ~~W~C~~CT~~N~~~a~~C~aCgt~rp  251 (299)
                      +.|.|+.|.+.|..++.+|.+|.++||
T Consensus         3 GsWeC~~C~v~N~~~~~~CvAC~tpkP   29 (29)
T d2gqea1           3 GTWDCDTCLVQNKPEAIKCVACETPKP   29 (29)
T ss_dssp             CCEECSSSCCEECTTCSBCSSSCCBCC
T ss_pred             ceeECCceEeEChhhCCEEeecCCCCC
Confidence            579999999999999999999998886
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]} Back     information, alignment and structure
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]} Back     information, alignment and structure
>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo (Bothrops asper), bap1 [TaxId: 8722]} Back     information, alignment and structure
>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]} Back     information, alignment and structure
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]} Back     information, alignment and structure