Citrus Sinensis ID: 022296
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 299 | 2.2.26 [Sep-21-2011] | |||||||
| O27710 | 258 | Phosphosulfolactate synth | yes | no | 0.789 | 0.914 | 0.233 | 1e-08 | |
| Q57703 | 251 | Phosphosulfolactate synth | yes | no | 0.719 | 0.856 | 0.230 | 1e-05 |
| >sp|O27710|PSLS_METTH Phosphosulfolactate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=comA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 47/283 (16%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R+ KPR+ G+T + +S+ D+ E +VD +KF G+ L + ++E V
Sbjct: 11 RSGKPRKNGITMVLDKGMGPASAR----DLMEISSDYVDFIKFGWGTLPLHRRDTVKEKV 66
Query: 77 KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136
DV G I + +EY ++ + +GF+T+E++ G++EI E R +
Sbjct: 67 DMYRSFDVEPYPGGTLFE-IAHLNDKVEEYFQEARSLGFETLEISNGTVEIETEEKCRLI 125
Query: 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGIN 196
+ G F V+ +RDR P+ +
Sbjct: 126 EMAVDEG------FMVLSEVGKKDPERDRLL------------------EPD-------D 154
Query: 197 KSRRAERCLEAGADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEATNP 250
+ R L AGA M+++++ + + ++R D + RL +++ ++EA
Sbjct: 155 RVRLVRADLRAGASMVLMEARESGQNIGIYDERGNIREDEFNHLTDRLPMDRIIWEAPQK 214
Query: 251 RTSEWFIRRYGPKVNL-FVDHSQVMDLEC----LRGRNLGKSH 288
+FI + GP VNL + ++ LE LRG LGK +
Sbjct: 215 SQQVYFILKIGPDVNLGNIPPEEITALETIRRGLRGDTLGKVN 257
|
Catalyzes the addition of sulfite to phosphoenolpyruvate (PEP) to yield (2R)-phospho-3-sulfolactate (PSL). Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 9 |
| >sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=comA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 109/252 (43%), Gaps = 37/252 (14%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPS 101
+ED + G ++D +KF G+ +++ + ++E + + V G E+ G
Sbjct: 28 VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK- 86
Query: 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161
F E++ +C+++GF+ +E++ GS +I E ++ K G F V+
Sbjct: 87 -FDEFLNECEKLGFEAVEISDGSSDISLEERKNAIKRAKDNG------FMVLTEVGKKMP 139
Query: 162 DRDRAFGAYVARAPRSTDKLFLASNPEIEVGVG--INKSRRAERCLEAGADMIMIDSDDV 219
D+D+ + D N +++ G I + R E+G + + D +
Sbjct: 140 DKDKQL---------TIDDRIKLINFDLDAGADYVIIEGR------ESGKGIGLFDKEGK 184
Query: 220 CKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC 278
K + D++AK + + K +FEA FI ++G VNL + +V+ LE
Sbjct: 185 VKENE---LDVLAK---NVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLET 238
Query: 279 ----LRGRNLGK 286
LRG GK
Sbjct: 239 LRRGLRGDTFGK 250
|
Catalyzes the addition of sulfite to phosphoenolpyruvate (PEP) to yield (2R)-phospho-3-sulfolactate (PSL). Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 299 | ||||||
| 449454694 | 286 | PREDICTED: uncharacterized protein LOC10 | 0.939 | 0.982 | 0.736 | 1e-123 | |
| 224116330 | 291 | predicted protein [Populus trichocarpa] | 0.959 | 0.986 | 0.715 | 1e-120 | |
| 30685384 | 286 | Aldolase-type TIM barrel family protein | 0.946 | 0.989 | 0.705 | 1e-119 | |
| 356524766 | 286 | PREDICTED: uncharacterized protein LOC10 | 0.946 | 0.989 | 0.690 | 1e-115 | |
| 255555077 | 277 | furin, putative [Ricinus communis] gi|22 | 0.899 | 0.971 | 0.714 | 1e-115 | |
| 297804020 | 1745 | hypothetical protein ARALYDRAFT_329472 [ | 0.899 | 0.154 | 0.630 | 1e-109 | |
| 3402751 | 1736 | putative protein [Arabidopsis thaliana] | 0.899 | 0.154 | 0.626 | 1e-109 | |
| 350534450 | 286 | phosphosulfolactate synthase-related pro | 0.946 | 0.989 | 0.639 | 1e-108 | |
| 356519509 | 291 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 0.993 | 0.654 | 1e-107 | |
| 357123468 | 299 | PREDICTED: uncharacterized protein LOC10 | 0.949 | 0.949 | 0.602 | 1e-104 |
| >gi|449454694|ref|XP_004145089.1| PREDICTED: uncharacterized protein LOC101208408 [Cucumis sativus] gi|449473349|ref|XP_004153856.1| PREDICTED: uncharacterized protein LOC101220954 [Cucumis sativus] gi|449488403|ref|XP_004158021.1| PREDICTED: uncharacterized protein LOC101228109 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/292 (73%), Positives = 251/292 (85%), Gaps = 11/292 (3%)
Query: 6 YGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS 65
Y WKSFDE EDR EKPRR GVTEMR PHYTLS+ +V+++IFES+GQFVDGLKFSGGSHS
Sbjct: 4 YLWKSFDEDEDRPEKPRRCGVTEMRGPHYTLST-QDVIQEIFESLGQFVDGLKFSGGSHS 62
Query: 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125
L+P+ F++EV + AH+HDVYVSTGDWAEHL+R GPS FKEYVE+CK +GFDTIELNVGSL
Sbjct: 63 LLPRDFMKEVTEMAHRHDVYVSTGDWAEHLLRKGPSGFKEYVEECKLLGFDTIELNVGSL 122
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185
++PEETLLRYVRL+K+ GL+AKP+FAV FNKSDIP +RAFGAY+ PRS++ L
Sbjct: 123 DVPEETLLRYVRLIKNGGLRAKPQFAVKFNKSDIPISGNRAFGAYIVPKPRSSE---LVE 179
Query: 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 245
+ ++ + RRAERCLEAGADMIMID+DDV KHA+ LRADIIAK+IGRLGLEKTMF
Sbjct: 180 DVDLLI-------RRAERCLEAGADMIMIDADDVSKHAEFLRADIIAKIIGRLGLEKTMF 232
Query: 246 EATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYF 297
EA+NP+TSEWFI YGPKVNLFVDHSQVMDLECLRGRNLGK+H S+L SSYF
Sbjct: 233 EASNPQTSEWFINHYGPKVNLFVDHSQVMDLECLRGRNLGKNHSSILGSSYF 284
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116330|ref|XP_002317271.1| predicted protein [Populus trichocarpa] gi|222860336|gb|EEE97883.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/299 (71%), Positives = 245/299 (81%), Gaps = 12/299 (4%)
Query: 2 SGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG 61
S YY WKSF+E EDR EKPRRFGVTEMR P YTL S N+L+D+FE+MGQFVDGLKFSG
Sbjct: 4 SSVYYQWKSFEEDEDRPEKPRRFGVTEMRGPQYTLLS-QNMLQDVFETMGQFVDGLKFSG 62
Query: 62 GSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121
GSHSLMPK FI+EVV AH+HDVYVSTGDWAEHL+ GP+AFKEYVE+CK +GFDTIELN
Sbjct: 63 GSHSLMPKSFIKEVVDMAHKHDVYVSTGDWAEHLLHKGPTAFKEYVEECKSMGFDTIELN 122
Query: 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181
VGSL +PEETLLRYVRL+KS GLKAKP+FAV FN+SDIP RAFGAYV PRS++ +
Sbjct: 123 VGSLGVPEETLLRYVRLIKSGGLKAKPQFAVKFNRSDIPIGGHRAFGAYVPPTPRSSELV 182
Query: 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241
+V + IN AERCLEAGADMIMID+DD+CK DSLRADI+ KVIGRLGLE
Sbjct: 183 -------EDVNLLIN---MAERCLEAGADMIMIDADDICKDVDSLRADIVVKVIGRLGLE 232
Query: 242 KTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLR-GRNLGKSHRSVLSSSYFLL 299
KTMFEA+N +T++WFI+RYGPKVNLFVDHSQV+ LECLR G N+G+ S L SSYFL
Sbjct: 233 KTMFEASNTKTADWFIKRYGPKVNLFVDHSQVIGLECLRGGHNMGRRQASALGSSYFLF 291
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685384|ref|NP_567623.2| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] gi|26452567|dbj|BAC43368.1| unknown protein [Arabidopsis thaliana] gi|332659039|gb|AEE84439.1| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/295 (70%), Positives = 253/295 (85%), Gaps = 12/295 (4%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLS-QNLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANL 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS++ +
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFV--- 178
Query: 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 244
+I++ + R+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG+EKTM
Sbjct: 179 --EDIDLLI-----RKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLGIEKTM 231
Query: 245 FEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 299
FEA++ + EWFI+RYGP VNL+VDHSQ+MDLECLRGR+LGK H+SVLSSSYFL
Sbjct: 232 FEASDAKLVEWFIKRYGPNVNLYVDHSQIMDLECLRGRHLGKDHQSVLSSSYFLF 286
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524766|ref|XP_003530999.1| PREDICTED: uncharacterized protein LOC100805668 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/294 (69%), Positives = 240/294 (81%), Gaps = 11/294 (3%)
Query: 6 YGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS 65
+ WKSF+E EDR KPR FGVTE++SPH TL S HN+L+DIFESMG +VDGLKFSGGSHS
Sbjct: 4 FRWKSFEENEDRPAKPRHFGVTEIQSPHCTLFS-HNLLQDIFESMGDYVDGLKFSGGSHS 62
Query: 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125
+MPK I++++ AHQHDVYVSTGDWAEH+I PS FKEYVE+CKQ+GFDTIELNVGSL
Sbjct: 63 MMPKATIKQIIDMAHQHDVYVSTGDWAEHMISKSPSGFKEYVEECKQLGFDTIELNVGSL 122
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185
EIPEET LR+VRLVKS GLKAKP F V FN+SDIP DRA+GAY+ PRS + L
Sbjct: 123 EIPEETFLRFVRLVKSGGLKAKPHFQVKFNESDIPKGGDRAYGAYIPPVPRSFE---LVE 179
Query: 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 245
+ + + RRAERCLEAGADMIMID+DDV KHAD++RADIIAK+IGRLG+EKTMF
Sbjct: 180 DVNLLI-------RRAERCLEAGADMIMIDADDVSKHADNMRADIIAKIIGRLGIEKTMF 232
Query: 246 EATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 299
EA+N R SEWFI++YGPKVNLF+DHS V+D+ECLRGRNLG++ S L +S FL
Sbjct: 233 EASNQRISEWFIKQYGPKVNLFIDHSNVVDVECLRGRNLGRNLASFLGASDFLF 286
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555077|ref|XP_002518576.1| furin, putative [Ricinus communis] gi|223542421|gb|EEF43963.1| furin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/280 (71%), Positives = 237/280 (84%), Gaps = 11/280 (3%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WK+FDE +DR EKPRRFGVTEMR P Y+L + N+L D+FESMGQFVDGLKFSGGSH
Sbjct: 4 YYQWKTFDEDDDRPEKPRRFGVTEMRGPQYSLLT-QNMLRDVFESMGQFVDGLKFSGGSH 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SLMP+ FI++V+ AHQHD+YVSTGDWAEHL+ GPSAFK+YVE+CK +GFDTIELNVGS
Sbjct: 63 SLMPRSFIKDVIDMAHQHDIYVSTGDWAEHLLHKGPSAFKDYVEECKNMGFDTIELNVGS 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184
L +PEETLLRYVRL+KSA LKAKP+FA FNKSDIP +RAFGAY+ P+S + +
Sbjct: 123 LGVPEETLLRYVRLIKSADLKAKPQFAAKFNKSDIPIGGNRAFGAYMPPTPQSFELI--- 179
Query: 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 244
+I++ + RRAERCL+AGADMIMID+DD+CK A+SLRADIIAKVIGRLGLEKTM
Sbjct: 180 --EDIDLLI-----RRAERCLKAGADMIMIDADDICKDAESLRADIIAKVIGRLGLEKTM 232
Query: 245 FEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNL 284
FEA+N +T+EWFI+ YGPKVNLF+DHSQV+ LECLRGRNL
Sbjct: 233 FEASNSKTTEWFIKHYGPKVNLFIDHSQVIGLECLRGRNL 272
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804020|ref|XP_002869894.1| hypothetical protein ARALYDRAFT_329472 [Arabidopsis lyrata subsp. lyrata] gi|297315730|gb|EFH46153.1| hypothetical protein ARALYDRAFT_329472 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/311 (63%), Positives = 242/311 (77%), Gaps = 42/311 (13%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLS-QNLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN S
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANS 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS++ +
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFV--- 178
Query: 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 244
+I++ + R+AERCLEAGAD IMID+DDVCK+ DSLRADIIAKVIGRLG+EKTM
Sbjct: 179 --EDIDLLI-----RKAERCLEAGADTIMIDADDVCKYPDSLRADIIAKVIGRLGIEKTM 231
Query: 245 FEATNPRTSEWFIRRYGP------------------------------KVNLFVDHSQVM 274
FEA++ + +EWFI+RYGP +VNL+VDHSQ+M
Sbjct: 232 FEASDGKLAEWFIKRYGPNVFADTPLYYFYLLFEWSPSQDSCLFVLVFQVNLYVDHSQIM 291
Query: 275 DLECLRGRNLG 285
DLECLRGR+L
Sbjct: 292 DLECLRGRHLA 302
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3402751|emb|CAA20197.1| putative protein [Arabidopsis thaliana] gi|7268928|emb|CAB79131.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/313 (62%), Positives = 241/313 (76%), Gaps = 44/313 (14%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLS-QNLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANL 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS++ +
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFV--- 178
Query: 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 244
+I++ + R+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG+EKTM
Sbjct: 179 --EDIDLLI-----RKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLGIEKTM 231
Query: 245 FEATNPRTSEWFIRRYGP--------------------------------KVNLFVDHSQ 272
FEA++ + EWFI+RYGP +VNL+VDHSQ
Sbjct: 232 FEASDAKLVEWFIKRYGPNVFADTLVLSIIFNLLFEWSPSQDSYLFVLVFQVNLYVDHSQ 291
Query: 273 VMDLECLRGRNLG 285
+MDLECLRGR+L
Sbjct: 292 IMDLECLRGRHLA 304
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350534450|ref|NP_001234653.1| phosphosulfolactate synthase-related protein [Solanum lycopersicum] gi|54639895|gb|AAV36519.1| phosphosulfolactate synthase-related protein [Solanum lycopersicum] gi|54639897|gb|AAV36520.1| phosphosulfolactate synthase-related protein [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/294 (63%), Positives = 241/294 (81%), Gaps = 11/294 (3%)
Query: 6 YGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS 65
Y WKSF++ DR EKPRR+GVTEM+ P+Y+L S +LED+ ESMG FVDGLK GSH+
Sbjct: 4 YRWKSFNDDGDRPEKPRRYGVTEMKGPNYSLFS-RGLLEDVLESMGHFVDGLKLCDGSHT 62
Query: 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125
+MPK +I+EV AH+H+VYVS+GD A+ ++ GPS+ KEY+E+CKQ+GFD+IEL+V SL
Sbjct: 63 VMPKNYIKEVTDMAHKHNVYVSSGDSADQMLFRGPSSLKEYIEECKQLGFDSIELDVASL 122
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185
+PEETLLRYVRL+KS+GL+AKP+F+V FNKSDI DRAFGAYV AP++++ +
Sbjct: 123 GLPEETLLRYVRLIKSSGLRAKPQFSVKFNKSDIAFAGDRAFGAYVIPAPQTSEMV---- 178
Query: 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 245
++++ V RRAERCLEAGADMIMI++DD+C+ A LR+DI+AK++GRLGLEKTMF
Sbjct: 179 -EDVDLLV-----RRAERCLEAGADMIMINADDLCRQAGLLRSDIVAKIVGRLGLEKTMF 232
Query: 246 EATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 299
EA+NP+ SEWF++RYGPKVNL VDHSQVMDLECLRGRNLG++H SVL SYFLL
Sbjct: 233 EASNPKISEWFVKRYGPKVNLIVDHSQVMDLECLRGRNLGQNHSSVLGRSYFLL 286
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519509|ref|XP_003528415.1| PREDICTED: uncharacterized protein LOC100781391 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/298 (65%), Positives = 232/298 (77%), Gaps = 9/298 (3%)
Query: 2 SGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG 61
S Y + WK F+E EDR KPR FGVTE+R PHYTL S HN+L+DIFES+G +VDGLKFSG
Sbjct: 3 SDYAFRWKCFEENEDRPAKPRCFGVTEIRRPHYTLFS-HNLLQDIFESVGDYVDGLKFSG 61
Query: 62 GSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121
GSHS+MPK I++ + AHQHDVYVSTGDWAEH++ PS+FKEYVE+ KQ+GFDTIELN
Sbjct: 62 GSHSMMPKATIKQAIDMAHQHDVYVSTGDWAEHMVSKSPSSFKEYVEEYKQLGFDTIELN 121
Query: 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181
V SLEIPEET LR++RLVKS GLKAKP F V FN+SDI R R + P
Sbjct: 122 VSSLEIPEETFLRFIRLVKSGGLKAKPHFQVKFNESDISPLR-RNLNKILVHHP------ 174
Query: 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241
F++ + E V + RRAERC+EAGADMIMID+DDV KHAD++RADIIAK+IGRLG+E
Sbjct: 175 FVSFSAEFVEDVNL-LIRRAERCIEAGADMIMIDADDVSKHADNMRADIIAKIIGRLGIE 233
Query: 242 KTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 299
KTMFEA+N R SEWFI++YGP VNLF+DH V+D+ECLRGRNLGK+ SVL SS FL
Sbjct: 234 KTMFEASNQRISEWFIKQYGPNVNLFIDHWNVVDVECLRGRNLGKNLASVLGSSDFLF 291
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357123468|ref|XP_003563432.1| PREDICTED: uncharacterized protein LOC100846790 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/294 (60%), Positives = 240/294 (81%), Gaps = 10/294 (3%)
Query: 6 YGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS 65
+G+ DE +DR EKPRR+GVTEMRSP+Y+ S+H+ L++I +S+G FVDGLKFSGGSHS
Sbjct: 16 HGYGHGDEADDRPEKPRRYGVTEMRSPYYSFRSAHHALQEILDSIGPFVDGLKFSGGSHS 75
Query: 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125
LM K I E+ AH+HD+YVSTGDWAEHL+R GPS+FK+YV++CK++GFDT+ELN GSL
Sbjct: 76 LMGKELIREITDLAHKHDMYVSTGDWAEHLLRQGPSSFKQYVQECKELGFDTVELNAGSL 135
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185
++PEE +LR VRL+K++GL+AKP F+V F+ SDIP+ DRAFGAY ++++++
Sbjct: 136 KLPEEAILRLVRLIKNSGLRAKPLFSVKFDSSDIPASGDRAFGAYTVPVKQTSERV---- 191
Query: 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 245
++++ + RRAERCLEAGADMIMID+DDVC+ ADSLRAD+IAK++GRLGL+KTMF
Sbjct: 192 -EDVDLLI-----RRAERCLEAGADMIMIDADDVCQRADSLRADVIAKIVGRLGLDKTMF 245
Query: 246 EATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 299
E +N TSEWF++RY P+VNLFVDHS+VM+LE LRG ++ +S S+L+S +FL+
Sbjct: 246 ETSNANTSEWFVKRYSPRVNLFVDHSEVMNLERLRGFDMRRSSPSLLTSPFFLM 299
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 299 | ||||||
| TAIR|locus:2141196 | 286 | HSA32 "HEAT-STRESS-ASSOCIATED | 0.943 | 0.986 | 0.710 | 2e-111 | |
| UNIPROTKB|Q653W2 | 302 | P0547F09.36 "Phosphosulfolacta | 0.929 | 0.920 | 0.611 | 4.2e-95 | |
| ASPGD|ASPL0000047680 | 342 | AN10197 [Emericella nidulans ( | 0.872 | 0.763 | 0.373 | 1.6e-38 | |
| UNIPROTKB|Q5BDB6 | 1107 | AN1464.2 "Putative uncharacter | 0.872 | 0.235 | 0.373 | 2.7e-37 | |
| UNIPROTKB|Q83AE7 | 290 | CBU_1954 "(2R)-phospho-3-sulfo | 0.806 | 0.831 | 0.271 | 3.3e-24 | |
| TIGR_CMR|CBU_1954 | 290 | CBU_1954 "hypothetical protein | 0.806 | 0.831 | 0.271 | 3.3e-24 |
| TAIR|locus:2141196 HSA32 "HEAT-STRESS-ASSOCIATED 32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 209/294 (71%), Positives = 254/294 (86%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLSQ-NLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANL 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS++ F+
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSE--FVE 179
Query: 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 244
+I++ + R+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG+EKTM
Sbjct: 180 ---DIDLLI-----RKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLGIEKTM 231
Query: 245 FEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFL 298
FEA++ + EWFI+RYGP VNL+VDHSQ+MDLECLRGR+LGK H+SVLSSSYFL
Sbjct: 232 FEASDAKLVEWFIKRYGPNVNLYVDHSQIMDLECLRGRHLGKDHQSVLSSSYFL 285
|
|
| UNIPROTKB|Q653W2 P0547F09.36 "Phosphosulfolactate synthase-related protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 178/291 (61%), Positives = 231/291 (79%)
Query: 12 DEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPF 71
D +DR EKPRR+GVTEMRSP Y +H+ L++I +S+G FVDGLKF+GGSHSLM K
Sbjct: 22 DGDDDRPEKPRRYGVTEMRSPFYAFRPAHHALQEILDSLGPFVDGLKFTGGSHSLMGKEL 81
Query: 72 IEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET 131
+ E+ AH+HD+YVSTGDWAEHL+R GPS FK+YVE+CK +GFDTIELN GSL++PEE
Sbjct: 82 VREITDLAHKHDIYVSTGDWAEHLLRQGPSFFKQYVEECKALGFDTIELNAGSLKLPEEA 141
Query: 132 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEV 191
LLR VRL+K++GL+AKP F+V F+ SDIP DRAFGAY+ ++++++ ++++
Sbjct: 142 LLRLVRLIKTSGLQAKPLFSVKFDSSDIPPSGDRAFGAYIVPVKQNSERV-----EDVDL 196
Query: 192 GVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 251
+ RRAERCLEAGADMIMID+DD+C+ ADSLRADI+AK++GRLGLEKTMFEA+NP
Sbjct: 197 LI-----RRAERCLEAGADMIMIDADDICQRADSLRADIVAKIVGRLGLEKTMFEASNPN 251
Query: 252 TSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNL-GKSHRSV--LSSSYFLL 299
TSEWF+RRYGP+VNLFVDHS VM+LE LRG N+ G + + + S +FL+
Sbjct: 252 TSEWFVRRYGPRVNLFVDHSDVMNLERLRGFNMRGVCNSPLFGIGSPFFLM 302
|
|
| ASPGD|ASPL0000047680 AN10197 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 103/276 (37%), Positives = 155/276 (56%)
Query: 11 FDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP 70
F R +KPR GVTE+R P+YT+ L DI E+MG VDGLKF+GGS SL P+
Sbjct: 57 FARSNPRPKKPRSQGVTEIRGPYYTVMGKR-YLADILETMGTHVDGLKFAGGSFSLFPEK 115
Query: 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRN-GP-SAFKEYVEDCKQVGFDTIELNVGSLEIP 128
+ E++ AH+H VYVSTG WAEHL+ + P S F +Y+ C+ +GF + LN+ +
Sbjct: 116 PLRELIDLAHEHSVYVSTGGWAEHLLTHPDPTSVFDKYLTKCEDLGF--VMLNLVPFRVL 173
Query: 129 EETLLRYVRLVK-SAGLKAKPKFAVMFNKSDIPSDRDRA---FGAYVARAPRSTDKLFLA 184
TL +++ S+G + P+ + + S +A G A T L
Sbjct: 174 --TLHHRFDVIELSSGFLSIPEDDWLRLVDKVHSYGLKAKPELGIQFG-AGGDTSAAGLE 230
Query: 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 244
S + G +N R+ L+AG + +MI+S+ + ++ S R D+++K++ L E+ M
Sbjct: 231 SLGTSDPGKLVNLGRKF---LDAGVERLMIESEGITENVKSWRTDVVSKIMKELPPERVM 287
Query: 245 FEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLR 280
FEA +P+ W+IR +G VNLFVDHSQ++ L LR
Sbjct: 288 FEAADPQVYTWYIREFGIDVNLFVDHSQIVQLSGLR 323
|
|
| UNIPROTKB|Q5BDB6 AN1464.2 "Putative uncharacterized protein" [Aspergillus nidulans FGSC A4 (taxid:227321)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 2.7e-37, P = 2.7e-37
Identities = 103/276 (37%), Positives = 155/276 (56%)
Query: 11 FDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP 70
F R +KPR GVTE+R P+YT+ L DI E+MG VDGLKF+GGS SL P+
Sbjct: 57 FARSNPRPKKPRSQGVTEIRGPYYTVMGKR-YLADILETMGTHVDGLKFAGGSFSLFPEK 115
Query: 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRN-GP-SAFKEYVEDCKQVGFDTIELNVGSLEIP 128
+ E++ AH+H VYVSTG WAEHL+ + P S F +Y+ C+ +GF + LN+ +
Sbjct: 116 PLRELIDLAHEHSVYVSTGGWAEHLLTHPDPTSVFDKYLTKCEDLGF--VMLNLVPFRVL 173
Query: 129 EETLLRYVRLVK-SAGLKAKPKFAVMFNKSDIPSDRDRA---FGAYVARAPRSTDKLFLA 184
TL +++ S+G + P+ + + S +A G A T L
Sbjct: 174 --TLHHRFDVIELSSGFLSIPEDDWLRLVDKVHSYGLKAKPELGIQFG-AGGDTSAAGLE 230
Query: 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 244
S + G +N R+ L+AG + +MI+S+ + ++ S R D+++K++ L E+ M
Sbjct: 231 SLGTSDPGKLVNLGRKF---LDAGVERLMIESEGITENVKSWRTDVVSKIMKELPPERVM 287
Query: 245 FEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLR 280
FEA +P+ W+IR +G VNLFVDHSQ++ L LR
Sbjct: 288 FEAADPQVYTWYIREFGIDVNLFVDHSQIVQLSGLR 323
|
|
| UNIPROTKB|Q83AE7 CBU_1954 "(2R)-phospho-3-sulfolactate synthase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 74/273 (27%), Positives = 139/273 (50%)
Query: 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRA 79
KPR G E+R P+Y + E + E+ G ++DGLKF+GG +L+ ++ A
Sbjct: 21 KPRHTGQVEIRGPYYEAFTVQQ-FEALLETWGYYIDGLKFAGGIQALLDAKTVKAFTDLA 79
Query: 80 HQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY---- 135
H+++VYV+TG + E ++ P+ Y+E+ K +GFD +E++ G E + L +
Sbjct: 80 HKYNVYVNTGGFIERIVIQNPNNVDRYLEETKALGFDVVEVSSGMFERAGDFSLDFQIDV 139
Query: 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGI 195
V+ ++ GLK KP+ +M ++ ++ + ++ ++ D+ IE G
Sbjct: 140 VKRIQKIGLKPKPEITIMSGVGG--GVKEISYQEKLKQS-KTVDQF-------IEEG--- 186
Query: 196 NKSRRAERCLEAGADMIMIDSDDVCKH-AD--SLRADIIAKVIGRLGLEKTMFEATNP-- 250
ER EAGA +MI+S+ + + AD + R D+I ++ + G EK MFE +
Sbjct: 187 ------ERFFEAGAHTLMIESEGITEGIADPKNWRKDVIFALVEKFGHEKLMFEVSPEDD 240
Query: 251 ---RTSEWFIRRYGPKVNLFVDHSQVMDLECLR 280
+T +W+++ +NL ++ +++ R
Sbjct: 241 EARQTFKWYLKEVSRDINLMMNSKNIVEFNAWR 273
|
|
| TIGR_CMR|CBU_1954 CBU_1954 "hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 74/273 (27%), Positives = 139/273 (50%)
Query: 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRA 79
KPR G E+R P+Y + E + E+ G ++DGLKF+GG +L+ ++ A
Sbjct: 21 KPRHTGQVEIRGPYYEAFTVQQ-FEALLETWGYYIDGLKFAGGIQALLDAKTVKAFTDLA 79
Query: 80 HQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY---- 135
H+++VYV+TG + E ++ P+ Y+E+ K +GFD +E++ G E + L +
Sbjct: 80 HKYNVYVNTGGFIERIVIQNPNNVDRYLEETKALGFDVVEVSSGMFERAGDFSLDFQIDV 139
Query: 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGI 195
V+ ++ GLK KP+ +M ++ ++ + ++ ++ D+ IE G
Sbjct: 140 VKRIQKIGLKPKPEITIMSGVGG--GVKEISYQEKLKQS-KTVDQF-------IEEG--- 186
Query: 196 NKSRRAERCLEAGADMIMIDSDDVCKH-AD--SLRADIIAKVIGRLGLEKTMFEATNP-- 250
ER EAGA +MI+S+ + + AD + R D+I ++ + G EK MFE +
Sbjct: 187 ------ERFFEAGAHTLMIESEGITEGIADPKNWRKDVIFALVEKFGHEKLMFEVSPEDD 240
Query: 251 ---RTSEWFIRRYGPKVNLFVDHSQVMDLECLR 280
+T +W+++ +NL ++ +++ R
Sbjct: 241 EARQTFKWYLKEVSRDINLMMNSKNIVEFNAWR 273
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 299 299 0.00095 115 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 606 (64 KB)
Total size of DFA: 220 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.76u 0.12s 23.88t Elapsed: 00:00:01
Total cpu time: 23.76u 0.12s 23.88t Elapsed: 00:00:01
Start: Tue May 21 01:35:17 2013 End: Tue May 21 01:35:18 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.4.1.19 | LOW CONFIDENCE prediction! |
| 3rd Layer | 4.4.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00012839001 | SubName- Full=Chromosome undetermined scaffold_405, whole genome shotgun sequence; (286 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 299 | |||
| pfam02679 | 245 | pfam02679, ComA, (2R)-phospho-3-sulfolactate synth | 2e-84 | |
| COG1809 | 258 | COG1809, COG1809, (2R)-phospho-3-sulfolactate synt | 5e-41 | |
| TIGR03849 | 237 | TIGR03849, arch_ComA, phosphosulfolactate synthase | 3e-16 | |
| pfam13654 | 509 | pfam13654, AAA_32, AAA domain | 0.003 |
| >gnl|CDD|190389 pfam02679, ComA, (2R)-phospho-3-sulfolactate synthase (ComA) | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 2e-84
Identities = 94/277 (33%), Positives = 140/277 (50%), Gaps = 42/277 (15%)
Query: 15 EDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEE 74
+R EKPRR G+T + LED+ ES G ++D LKF G+ +LMP+ ++E
Sbjct: 4 PERPEKPRRTGLTMVLDKGLGPRF----LEDLLESAGDYIDFLKFGWGTSALMPEDILKE 59
Query: 75 VVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+ AH+H VYV TG + + F EY+ +CK++GFD IE++ G++E+PEE LR
Sbjct: 60 KIDLAHEHGVYVYTGGTLFEIAIS-QGKFDEYLRECKELGFDAIEISDGTIELPEEERLR 118
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVG 194
+R K AG K K D D + D+L
Sbjct: 119 LIRKAKKAGFKVLS----EVGKKDPELDS-----------SLTPDELI------------ 151
Query: 195 INKSRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKTMFEATN 249
+ ER LEAGAD ++I++ + +R D++ +++ RLGLEK +FEA
Sbjct: 152 ----EQIERDLEAGADKVIIEARESGGVGLYDSDGEVRTDLVEEILERLGLEKLIFEAPQ 207
Query: 250 PRTSEWFIRRYGPKVNL-FVDHSQVMDLECLRGRNLG 285
+ WFI+R+GP VNL + S+V+ LE LR G
Sbjct: 208 KKQQVWFIKRFGPNVNLGNIPPSEVLALETLRRGLRG 244
|
In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyzes the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyzes the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalyzed reaction is analogous to those reactions catalyzed by beta-elimination enzymes that proceed through an enolate intermediate. Length = 245 |
| >gnl|CDD|224722 COG1809, COG1809, (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-41
Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 47/285 (16%)
Query: 9 KSFD-EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM 67
+F+ R EKPR FG+T + +ED+ + G +VD +KF G+ SL+
Sbjct: 2 NAFEFLPPARPEKPRTFGMTVVLDKGLGPRF----VEDVLKVAGDYVDFVKFGWGTSSLI 57
Query: 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 127
K ++E + ++D+YV G I EY+ + K++GF+ IE++ G++ +
Sbjct: 58 DKDQVKEKIDMYKENDIYVFPGG-TLFEIAYSQDKVDEYLNEAKELGFEAIEISNGTIPM 116
Query: 128 PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNP 187
E R + G + P + D A
Sbjct: 117 STEEKCRLIERAVDEGFMVLSEVG-----KKDP-ESDSAL-------------------- 150
Query: 188 EIEVGVG-INKSRRAERCLEAGADMIMIDSDD------VCKHADSLRADIIAKVIGRLGL 240
+ V IN ++AGA+ ++ ++ + + + +R + +I LG+
Sbjct: 151 SPDDRVKLIND------DVDAGAEYVIAEARESGKEIGITDNEGEVREGELDSIIKGLGI 204
Query: 241 EKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNL 284
+ +FEA WFI + GP+VNL + +++ LE LR R L
Sbjct: 205 NRVIFEAPQKSQQVWFILKIGPEVNLANIPFEEIIALETLR-RGL 248
|
Length = 258 |
| >gnl|CDD|163561 TIGR03849, arch_ComA, phosphosulfolactate synthase | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-16
Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 45/255 (17%)
Query: 44 EDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSA 102
ED + G ++ +KF G+ +L+ + ++E ++ + + V G E G
Sbjct: 15 EDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--K 72
Query: 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162
F EY+ +C ++GF+ +E++ GS+EI E + K G F V+ S++
Sbjct: 73 FDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNG------FMVL---SEVGKK 123
Query: 163 RDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH 222
P+ + + INK LEAGAD ++I+ + K+
Sbjct: 124 SPEKDSEL---------------TPDDRIKL-INK------DLEAGADYVIIEGRESGKN 161
Query: 223 ------ADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMD 275
+++ D + + + + K +FEA FI ++GP VNL + +V+
Sbjct: 162 IGLFDEKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVIS 221
Query: 276 LEC----LRGRNLGK 286
LE LRG GK
Sbjct: 222 LETLRRGLRGDTFGK 236
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679 [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Energy metabolism, Methanogenesis]. Length = 237 |
| >gnl|CDD|222290 pfam13654, AAA_32, AAA domain | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.003
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 215 DSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLFVDHS 271
D V + D+++ DI+ + L ++ A+ RRY +VNL VD+S
Sbjct: 234 DLPKVLAYLDAVQEDILENLDLFLEEDEAEAAASGAEDQF---RRY--QVNLLVDNS 285
|
This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop. Length = 509 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 299 | |||
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 100.0 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 100.0 | |
| COG1809 | 258 | (2R)-phospho-3-sulfolactate synthase (PSL synthase | 100.0 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 97.36 | |
| PRK13209 | 283 | L-xylulose 5-phosphate 3-epimerase; Reviewed | 97.24 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 97.19 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 97.02 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 96.99 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 96.85 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 96.83 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.81 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 96.62 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 96.6 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 96.52 | |
| PRK13210 | 284 | putative L-xylulose 5-phosphate 3-epimerase; Revie | 96.52 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.44 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.31 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 96.3 | |
| TIGR00542 | 279 | hxl6Piso_put hexulose-6-phosphate isomerase, putat | 96.24 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 96.07 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 96.0 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 95.98 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 95.98 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 95.96 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 95.96 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 95.8 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 95.74 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 95.7 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 95.69 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 95.67 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 95.57 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 95.56 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.54 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 95.49 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 95.47 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 95.47 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 95.42 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 95.38 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 95.38 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 95.36 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 95.34 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 95.28 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 95.09 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 95.07 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 94.91 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 94.9 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 94.9 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 94.89 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 94.78 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 94.78 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 94.71 | |
| PRK09856 | 275 | fructoselysine 3-epimerase; Provisional | 94.7 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 94.57 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 94.53 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 94.5 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 94.48 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 94.36 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 94.33 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 94.28 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 94.26 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 94.2 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 94.13 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 94.11 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 94.1 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 94.04 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 94.02 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 93.94 | |
| cd06547 | 339 | GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENG | 93.86 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 93.85 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 93.79 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 93.77 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 93.69 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 93.68 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 93.58 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 93.54 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 93.5 | |
| COG1082 | 274 | IolE Sugar phosphate isomerases/epimerases [Carboh | 93.49 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 93.41 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 93.37 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 93.37 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 93.29 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 93.21 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 93.21 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 93.2 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 93.17 | |
| TIGR03234 | 254 | OH-pyruv-isom hydroxypyruvate isomerase. This enzy | 93.11 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 93.1 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 92.98 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 92.98 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 92.95 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 92.86 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 92.79 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 92.76 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 92.63 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 92.47 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 92.47 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 92.46 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 92.42 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 92.33 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 92.27 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 92.25 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 92.17 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 91.9 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 91.83 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 91.68 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 91.6 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 91.53 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 91.47 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 91.3 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 91.2 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 91.16 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 91.11 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 91.1 | |
| PRK07094 | 323 | biotin synthase; Provisional | 91.07 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 91.04 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 91.02 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 91.01 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 90.92 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 90.86 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 90.86 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 90.78 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 90.76 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 90.71 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 90.69 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 90.63 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 90.57 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 90.47 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 90.35 | |
| PRK10812 | 265 | putative DNAse; Provisional | 90.34 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 90.34 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 89.95 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 89.93 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 89.93 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 89.84 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 89.71 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 89.66 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 89.58 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 89.54 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 89.42 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 89.34 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 89.14 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 89.12 | |
| smart00518 | 273 | AP2Ec AP endonuclease family 2. These endonuclease | 89.07 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 89.06 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 89.02 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 88.99 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 88.99 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 88.85 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 88.83 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 88.78 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 88.75 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 88.74 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 88.72 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 88.62 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 88.52 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 88.51 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 88.47 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 88.37 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 88.36 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 88.23 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 88.18 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 87.94 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.59 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 87.5 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 87.44 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 87.44 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 87.43 | |
| PLN02591 | 250 | tryptophan synthase | 87.21 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 87.03 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.0 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 86.86 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 86.53 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 86.5 | |
| COG3623 | 287 | SgaU Putative L-xylulose-5-phosphate 3-epimerase [ | 86.45 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 86.3 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 86.15 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 85.98 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 85.92 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 85.72 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 85.58 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 85.55 | |
| PRK09989 | 258 | hypothetical protein; Provisional | 84.99 | |
| PF00215 | 226 | OMPdecase: Orotidine 5'-phosphate decarboxylase / | 84.97 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 84.8 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 84.79 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 84.63 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 84.6 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 84.6 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 84.5 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 84.45 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 84.11 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 83.73 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 83.72 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 83.59 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 83.57 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 83.3 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 83.24 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 82.95 | |
| PF01261 | 213 | AP_endonuc_2: Xylose isomerase-like TIM barrel; In | 82.94 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 82.92 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 82.91 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 82.85 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 82.84 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 82.84 | |
| PRK15452 | 443 | putative protease; Provisional | 82.81 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 82.64 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 82.57 | |
| TIGR00587 | 274 | nfo apurinic endonuclease (APN1). All proteins in | 82.51 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 82.5 | |
| PRK12677 | 384 | xylose isomerase; Provisional | 82.48 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 82.46 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 82.44 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 82.24 | |
| PRK09997 | 258 | hydroxypyruvate isomerase; Provisional | 82.16 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 82.05 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 81.56 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 81.53 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 81.47 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 81.47 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 81.22 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 81.18 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 81.09 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 81.05 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 80.68 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 80.38 | |
| smart00481 | 67 | POLIIIAc DNA polymerase alpha chain like domain. D | 80.23 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 80.11 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 80.09 | |
| PRK10425 | 258 | DNase TatD; Provisional | 80.06 |
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-93 Score=653.59 Aligned_cols=237 Identities=39% Similarity=0.663 Sum_probs=196.4
Q ss_pred CCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cH
Q 022296 13 EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DW 91 (299)
Q Consensus 13 ~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tl 91 (299)
++|+|++|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||++.|++||++||+|||+|||| |+
T Consensus 1 ~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl 76 (244)
T PF02679_consen 1 NLPERPEKPRSRGLTMVIDKGL----GLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTL 76 (244)
T ss_dssp -TTGGG-SS-SSS-EEEEESS------HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHH
T ss_pred CCCCCCCCCCCCCcEEEecCCC----CHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHH
Confidence 4789999999999999999998 888999999999999999999999999999999999999999999999997 69
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
||+|++|+ ++++|+++||++||++|||||||++||+++|+++|++++++||+|+||||+|++.++
T Consensus 77 ~E~a~~q~--~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~------------- 141 (244)
T PF02679_consen 77 FEVAYQQG--KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESD------------- 141 (244)
T ss_dssp HHHHHHTT---HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHH-------------
T ss_pred HHHHHhcC--hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhc-------------
Confidence 99999999 999999999999999999999999999999999999999999999999999855321
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-----ccccCCCcccHHHHHHHHhccCCCceEEe
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKTMFE 246 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i~~ii~~l~~eklifE 246 (299)
...+++++ |+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||
T Consensus 142 ---------------~~~~~~~~---i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifE 203 (244)
T PF02679_consen 142 ---------------FSLDPEEL---IEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFE 203 (244)
T ss_dssp ---------------TT--CCHH---HHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE
T ss_pred ---------------ccCCHHHH---HHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCCHhHEEEe
Confidence 01337788 99999999999999999999 99999999999999999999999999999
Q ss_pred cCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCC
Q 022296 247 ATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGK 286 (299)
Q Consensus 247 AP~k~qQ~~fI~~fG~~VNLg-I~~~eVi~LE~LR~~~~G~ 286 (299)
||+|+||+|||++|||||||| |+|+||++|||||+|+||.
T Consensus 204 Ap~k~qq~~~I~~~G~~VNLgNI~~~eVl~LE~LR~GLrgD 244 (244)
T PF02679_consen 204 APQKEQQEWFIKRFGPNVNLGNIAPSEVLALETLRRGLRGD 244 (244)
T ss_dssp --SHHHHHHHHHHH-TT--EEEEEGGGHHHHHHHHCT-SGG
T ss_pred CCCHhHHHHHHHHhCCCcCcccCCHHHHHHHHHHhccccCC
Confidence 999999999999999999998 9999999999999999983
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-87 Score=611.41 Aligned_cols=226 Identities=24% Similarity=0.426 Sum_probs=214.4
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHH
Q 022296 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFK 104 (299)
Q Consensus 26 lT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~ 104 (299)
+|||+|||| |+++++|+|++||+|||++||||||++|||++.|+|||++||+|||+|||| ||||+|+.|+ +++
T Consensus 1 lT~v~dkgl----~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~--~~~ 74 (237)
T TIGR03849 1 ITMVLDKGL----PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFD 74 (237)
T ss_pred CceEecCCC----CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhh--hHH
Confidence 699999999 788999999999999999999999999999999999999999999999997 6999999998 999
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhccc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (299)
+|+++||++||++|||||||++||+++|+++|++++++||+|+||||+|++.. + +
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~------~-------------~------ 129 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEK------D-------------S------ 129 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcc------c-------------c------
Confidence 99999999999999999999999999999999999999999999999997522 1 0
Q ss_pred CCCccchhhhhhhHHHHHHHHHccCcEEEEecc------ccccCCCcccHHHHHHHHhccCCCceEEecCCchhHHHHHH
Q 022296 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIR 258 (299)
Q Consensus 185 ~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar------gi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~qQ~~fI~ 258 (299)
.++++++ |+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||||+|+||+|||+
T Consensus 130 ---~~~~~~~---i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~ 203 (237)
T TIGR03849 130 ---ELTPDDR---IKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFIL 203 (237)
T ss_pred ---cCCHHHH---HHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHH
Confidence 1347788 99999999999999999995 89999999999999999999999999999999999999999
Q ss_pred HhCCCcccc-cCCCCchhhhhhhcccCCCcc
Q 022296 259 RYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 288 (299)
Q Consensus 259 ~fG~~VNLg-I~~~eVi~LE~LR~~~~G~~~ 288 (299)
+|||||||| |+|+||++|||||+|+||.+.
T Consensus 204 ~~G~~VNL~NI~~~evi~LE~LR~GLrgDT~ 234 (237)
T TIGR03849 204 KFGPDVNLGNIPPEEVISLETLRRGLRGDTF 234 (237)
T ss_pred HhCCCcccccCCHHHHHHHHHHhcccccccc
Confidence 999999997 999999999999999998654
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-81 Score=570.34 Aligned_cols=244 Identities=25% Similarity=0.468 Sum_probs=228.4
Q ss_pred cccCCC-CCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCcee
Q 022296 8 WKSFDE-YEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (299)
Q Consensus 8 ~~~f~~-~~~R~~KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v 86 (299)
|+.|.- .|.|++|||.+|+|+|+|||| ||+.++|+|++||+|||++||||||++|.+++.+++||++||+|||+|
T Consensus 1 m~aF~f~~~~r~~kPr~~G~T~vldkg~----~p~f~~D~~~vagdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v 76 (258)
T COG1809 1 MNAFEFLPPARPEKPRTFGMTVVLDKGL----GPRFVEDVLKVAGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYV 76 (258)
T ss_pred CCcccccCCCCCCCCccCCeEEEEeCCC----ChHHHHHHHHhhhhheeeeeecccccccccHHHHHHHHHHHHHcCcee
Confidence 456764 467999999999999999999 888999999999999999999999999999999999999999999999
Q ss_pred cCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc
Q 022296 87 STG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR 165 (299)
Q Consensus 87 ~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~ 165 (299)
||| |+||+++.|+ +|++|+++|+++||++|||||||++|+.++||++|+++.+.||+|+||+|+|.+.+ |+
T Consensus 77 ~pGGtlfe~a~~~~--kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vlsEvGkk~~e~------~~ 148 (258)
T COG1809 77 FPGGTLFEIAYSQD--KVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVGKKDPES------DS 148 (258)
T ss_pred cCCceEEEeehhcc--cHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEehhhcccCcch------hh
Confidence 996 7999999999 99999999999999999999999999999999999999999999999999997632 21
Q ss_pred cccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc------ccccCCCcccHHHHHHHHhccC
Q 022296 166 AFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar------gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.++++++ ++.+..|++|||++||+||| |||++.|+||++.++.|++++|
T Consensus 149 ----------------------~l~~~d~---~k~i~~dvdaGa~~vi~eAresg~~~Gi~~~~g~~r~~~~~~ii~~l~ 203 (258)
T COG1809 149 ----------------------ALSPDDR---VKLINDDVDAGAEYVIAEARESGKEIGITDNEGEVREGELDSIIKGLG 203 (258)
T ss_pred ----------------------hcChHHH---HHHHHHHHHcchHHhhhhhhhhccccCccccccchhhhHHHHHHhcCC
Confidence 1235666 99999999999999999998 7999999999999999999999
Q ss_pred CCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCCcc
Q 022296 240 LEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 288 (299)
Q Consensus 240 ~eklifEAP~k~qQ~~fI~~fG~~VNLg-I~~~eVi~LE~LR~~~~G~~~ 288 (299)
++|+|||||+|.||+|||++|||+|||+ |||+||++|||||+|+||.+.
T Consensus 204 i~rviFEAp~k~qq~~fI~k~GpevNLanip~~eii~LEtLR~gLrgdT~ 253 (258)
T COG1809 204 INRVIFEAPQKSQQVWFILKIGPEVNLANIPFEEIIALETLRRGLRGDTF 253 (258)
T ss_pred chheeeecCCcchhhhHHHHhCCcCcccCCCHHHHHHHHHHHhhccccch
Confidence 9999999999999999999999999999 999999999999999888544
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0055 Score=59.56 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=123.3
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022296 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (299)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (299)
.=+++++.||. + ..+|+-.....-+|.+.++.. ....+.+++-++.+|++|..++.. ++.+....++.+
T Consensus 78 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~~~~~~~i~~ak~~G~~v~~~--l~~a~~~~~e~l 146 (337)
T PRK08195 78 AKIAALLLPGI----G--TVDDLKMAYDAGVRVVRVATH---CTEADVSEQHIGLARELGMDTVGF--LMMSHMAPPEKL 146 (337)
T ss_pred CEEEEEeccCc----c--cHHHHHHHHHcCCCEEEEEEe---cchHHHHHHHHHHHHHCCCeEEEE--EEeccCCCHHHH
Confidence 45677778876 2 346776667778999998864 445568999999999999877653 233334455678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.++.+.+.++|.++|-|.|-.-.+.+++-.++|+.++++ +.....+|..+. + |
T Consensus 147 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H~H--n-----n------------------- 199 (337)
T PRK08195 147 AEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAA-LKPDTQVGFHGH--N-----N------------------- 199 (337)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCCeEEEEeC--C-----C-------------------
Confidence 888889999999999999999999999999999999983 111223455311 0 1
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccCC
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
...- +..+...++|||+ +|++. |+=...||..++.+-..+++.|.
T Consensus 200 -------lGla---~ANslaAi~aGa~--~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~ 246 (337)
T PRK08195 200 -------LGLG---VANSLAAVEAGAT--RIDGSLAGLGAGAGNTPLEVLVAVLDRMGW 246 (337)
T ss_pred -------cchH---HHHHHHHHHhCCC--EEEecChhhcccccCccHHHHHHHHHhcCC
Confidence 2333 5666788999999 67886 88889999999988777766553
|
|
| >PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0041 Score=57.15 Aligned_cols=159 Identities=18% Similarity=0.236 Sum_probs=92.2
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCC
Q 022296 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPS 161 (299)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~-gvK~~~sevg~ 161 (299)
|.+|+++.++ -.+++.++.++++||++||++-.. ..++.++..++-+.+++.|+++.+-- +...+. ..++
T Consensus 11 ~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~-~~~~ 88 (283)
T PRK13209 11 GIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRF-PLGS 88 (283)
T ss_pred eeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEeccccccc-CCCC
Confidence 6789999765 379999999999999999998543 24477778788888889999865411 110000 0000
Q ss_pred cccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCC--ccc---H---HHHHH
Q 022296 162 DRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHAD--SLR---A---DIIAK 233 (299)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G--~~r---~---d~i~~ 233 (299)
.|+ . . .+...+.+ .+.++.+-+.|+.+|.+-+........ ... . ..+.+
T Consensus 89 -~~~--------~--~---------r~~~~~~~---~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 145 (283)
T PRK13209 89 -EDD--------A--V---------RAQALEIM---RKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVE 145 (283)
T ss_pred -CCH--------H--H---------HHHHHHHH---HHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHH
Confidence 000 0 0 00012334 455677778999999986542211111 100 1 22333
Q ss_pred HHhccCCCceEEec---C---CchhHHHHHHHhC-CCcccccCCCCch
Q 022296 234 VIGRLGLEKTMFEA---T---NPRTSEWFIRRYG-PKVNLFVDHSQVM 274 (299)
Q Consensus 234 ii~~l~~eklifEA---P---~k~qQ~~fI~~fG-~~VNLgI~~~eVi 274 (299)
+++..|+ +|.+|. + ...+-..+++..| |+|.|..|+..+.
T Consensus 146 ~A~~~GV-~i~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~D~~h~~ 192 (283)
T PRK13209 146 LASRASV-TLAFEIMDTPFMNSISKALGYAHYLNSPWFQLYPDIGNLS 192 (283)
T ss_pred HHHHhCC-EEEEeecCCcccCCHHHHHHHHHHhCCCccceEeccchHH
Confidence 3444454 577775 1 3334556788888 5666656665555
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.011 Score=57.31 Aligned_cols=167 Identities=15% Similarity=0.156 Sum_probs=122.8
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022296 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (299)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (299)
.=+++++.||. + ..+|+=.....-||.+-++.. ....+.+++-|+.+|+.|..++.. ++.+....|+.+
T Consensus 77 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~d~~~~~i~~ak~~G~~v~~~--l~~s~~~~~e~l 145 (333)
T TIGR03217 77 AKVAVLLLPGI----G--TVHDLKAAYDAGARTVRVATH---CTEADVSEQHIGMARELGMDTVGF--LMMSHMTPPEKL 145 (333)
T ss_pred CEEEEEeccCc----c--CHHHHHHHHHCCCCEEEEEec---cchHHHHHHHHHHHHHcCCeEEEE--EEcccCCCHHHH
Confidence 45788888886 2 345655555567999998864 445568999999999999877642 223334556688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.++.+.+.+.|.++|-|.|-.-.+.+++-.++|+.++++ +..-.++|..+.. |
T Consensus 146 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H~Hn-------n------------------- 198 (333)
T TIGR03217 146 AEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAV-LKPETQVGFHAHH-------N------------------- 198 (333)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh-CCCCceEEEEeCC-------C-------------------
Confidence 888899999999999999999999999999999999973 2211235553110 1
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccCC
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
...- +-.+...++|||++ |++. |+=...||.-++.+-..+++.|.
T Consensus 199 -------lGla---~ANslaAi~aGa~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~ 245 (333)
T TIGR03217 199 -------LSLA---VANSIAAIEAGATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGW 245 (333)
T ss_pred -------CchH---HHHHHHHHHhCCCE--EEeecccccccccCccHHHHHHHHHhcCC
Confidence 2333 55667889999998 6775 89999999999988877776553
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.017 Score=54.30 Aligned_cols=164 Identities=12% Similarity=0.126 Sum_probs=116.0
Q ss_pred CCCCCCcchhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHH
Q 022296 32 PHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (299)
Q Consensus 32 kGl~~~~g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~ 109 (299)
+|+... ..+..++.++.+.+. +|.+-+...++-+ +.+++-++.++++|..+... .. +.+-...++.+.++.+.
T Consensus 83 ~~~~~~-p~~~~~~di~~~~~~g~~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~i~~-~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 83 VGYRHY-PDDVVELFVEKAAKNGIDIFRIFDALNDV---RNLEVAIKAVKKAGKHVEGAICY-TGSPVHTLEYYVKLAKE 157 (275)
T ss_pred cCccCC-CcHHHHHHHHHHHHcCCCEEEEeecCChH---HHHHHHHHHHHHCCCeEEEEEEe-cCCCCCCHHHHHHHHHH
Confidence 555444 334567777776665 8999998766653 57999999999999876542 11 11112334578888899
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
+.++|.+.|-+.|-.-.+.+++-.++|+.++++ +. ..+++.+. .+
T Consensus 158 ~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~H-nd------------------------------- 202 (275)
T cd07937 158 LEDMGADSICIKDMAGLLTPYAAYELVKALKKE-VG--LPIHLHTH-DT------------------------------- 202 (275)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-CC--CeEEEEec-CC-------------------------------
Confidence 999999999999999999999999999999984 11 23444321 11
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... ...+...++|||++|=.=--|+=+..||..++.+-..+...|
T Consensus 203 -~GlA---~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g 248 (275)
T cd07937 203 -SGLA---VATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTG 248 (275)
T ss_pred -CChH---HHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccC
Confidence 2233 556678899999975444448888899999888877776554
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.008 Score=55.68 Aligned_cols=152 Identities=18% Similarity=0.249 Sum_probs=110.3
Q ss_pred HHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHH
Q 022296 44 EDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
+|+=......+|.+.+...+|-.+.+ +.+++-++.++++|..|+.+- |.+-...++.+.++.+.+.+
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~ 150 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA--EDASRADPDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee--ccCCCCCHHHHHHHHHHHHH
Confidence 34333344568999998877766432 356789999999999888653 23333445678888889999
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchh
Q 022296 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVG 192 (299)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (299)
.|.+.|-+.|-+-.+.+++-.++|+.+++. +. ..++..+.. + ..
T Consensus 151 ~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~Hn-~--------------------------------~G 194 (259)
T cd07939 151 AGADRLRFADTVGILDPFTTYELIRRLRAA-TD--LPLEFHAHN-D--------------------------------LG 194 (259)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEecC-C--------------------------------CC
Confidence 999999999999999999999999999974 22 235553221 1 22
Q ss_pred hhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhcc
Q 022296 193 VGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 193 ~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l 238 (299)
.. ...+-..+++||++ |++. |+=+..||.-++.+-..+...
T Consensus 195 la---~An~laAi~aG~~~--vd~s~~G~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 195 LA---TANTLAAVRAGATH--VSVTVNGLGERAGNAALEEVVMALKHL 237 (259)
T ss_pred hH---HHHHHHHHHhCCCE--EEEecccccccccCcCHHHHHHHHHHh
Confidence 23 55667789999986 5886 888999999988877666544
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.034 Score=51.59 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=118.3
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022296 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (299)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (299)
.-++++..++. + ..+|+-.....-+|.+-+..-.+- .+.+++-++.+|++|..+...- +.+..-.|+.+
T Consensus 75 ~~~~~~~~~~~----~--~~~~i~~a~~~g~~~iri~~~~s~---~~~~~~~i~~ak~~G~~v~~~~--~~~~~~~~~~~ 143 (263)
T cd07943 75 AKLGVLLLPGI----G--TVDDLKMAADLGVDVVRVATHCTE---ADVSEQHIGAARKLGMDVVGFL--MMSHMASPEEL 143 (263)
T ss_pred CEEEEEecCCc----c--CHHHHHHHHHcCCCEEEEEechhh---HHHHHHHHHHHHHCCCeEEEEE--EeccCCCHHHH
Confidence 34555666655 2 246665556667999888765553 3579999999999998776531 22333445678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.++.+.+.+.|.+.|-+.|-+-.+.+++-.++++.++++ +.. -.++..+. . |
T Consensus 144 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~l~~H~H-n------~------------------- 195 (263)
T cd07943 144 AEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREA-LDP-TPVGFHGH-N------N------------------- 195 (263)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CCC-ceEEEEec-C------C-------------------
Confidence 888999999999999999999999999999999999984 111 13555321 1 1
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+...++|||++ |++. |+=+..||..++.+-..++..+
T Consensus 196 -------~GlA---~AN~laAi~aGa~~--vd~s~~GlG~~aGN~~~E~lv~~L~~~g 241 (263)
T cd07943 196 -------LGLA---VANSLAAVEAGATR--IDGSLAGLGAGAGNTPLEVLVAVLERMG 241 (263)
T ss_pred -------cchH---HHHHHHHHHhCCCE--EEeecccccCCcCCccHHHHHHHHHhcC
Confidence 2333 66668889999996 6776 8888899999988777666544
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=52.90 Aligned_cols=156 Identities=24% Similarity=0.239 Sum_probs=106.8
Q ss_pred hHHHHHHH-hhcccccEEEeeCcccccCC-----------hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH
Q 022296 41 NVLEDIFE-SMGQFVDGLKFSGGSHSLMP-----------KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 41 ~~l~DlLe-~ag~yID~lKfg~GTs~l~p-----------~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~ 108 (299)
...+..++ ....=+|.+-+...+|-++. -+.+++-++.++++|..++.+. |.+-...++.+.++.+
T Consensus 67 ~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~--~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC--EDASRTDPEELLELAE 144 (237)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE--TTTGGSSHHHHHHHHH
T ss_pred HHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc--cccccccHHHHHHHHH
Confidence 34444333 23355777777776665222 3467888999999999997762 2222344557888999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+.++|.+.|-|.|..-.+.+++-.++|+.+++.--. .+++.... . |
T Consensus 145 ~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l~~H~H-n------d------------------------ 191 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IPLGFHAH-N------D------------------------ 191 (237)
T ss_dssp HHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SEEEEEEB-B------T------------------------
T ss_pred HHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--CeEEEEec-C------C------------------------
Confidence 9999999999999999999999999999999995332 34555321 1 1
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhcc
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l 238 (299)
.... +..+-..++|||++| ++- |+=+..||...+.+-..+...
T Consensus 192 --~Gla---~An~laA~~aGa~~i--d~t~~GlG~~~Gn~~le~lv~~L~~~ 236 (237)
T PF00682_consen 192 --LGLA---VANALAALEAGADRI--DGTLGGLGERAGNAPLEELVAALERM 236 (237)
T ss_dssp --TS-H---HHHHHHHHHTT-SEE--EEBGGGGSSTTSB-BHHHHHHHHHHT
T ss_pred --ccch---hHHHHHHHHcCCCEE--EccCccCCCCCCCccHHHHHHHHhhc
Confidence 2333 666788999999994 665 899999999988877666544
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0064 Score=55.12 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=110.3
Q ss_pred HHHHHHHhhcccccEEEeeCcccccC-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHH--hCCchHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIR--NGPSAFKEYVE 108 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~--qg~~~~~~yl~ 108 (299)
.++.+.+. | +|.+-+...++-.+ ..+.+.+-++.++++|+.+... +|.+.. .+++.+.++++
T Consensus 79 ~i~~a~~~-g--~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~--~~~~~~~~~~~~~l~~~~~ 153 (265)
T cd03174 79 GIERALEA-G--VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS--LEDAFGCKTDPEYVLEVAK 153 (265)
T ss_pred hHHHHHhC-C--cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--EEeecCCCCCHHHHHHHHH
Confidence 44444443 3 78888887766211 1245888999999999977653 122223 56668999999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+.++|.+.|-+.|-+-.+.+++-.++|+.+++.-=. ..++..+. . |
T Consensus 154 ~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~H~H-n------~------------------------ 200 (265)
T cd03174 154 ALEEAGADEISLKDTVGLATPEEVAELVKALREALPD--VPLGLHTH-N------T------------------------ 200 (265)
T ss_pred HHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC--CeEEEEeC-C------C------------------------
Confidence 9999999999999999999999999999999984211 23444211 1 1
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+-..++|||++ |++- |+=+..||..++.+-..++..+
T Consensus 201 --~gla---~an~laA~~aG~~~--id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 201 --LGLA---VANSLAALEAGADR--VDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred --CChH---HHHHHHHHHcCCCE--EEeccccccccccCccHHHHHHHHHhcC
Confidence 2334 66678899999977 5886 8889999999998887777655
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=56.70 Aligned_cols=121 Identities=16% Similarity=0.328 Sum_probs=87.5
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (299)
..||-+-||+||.++.|.+.|++.++..+++.. .|+.+.-+|+.+ ++.++.+++.||+.|.|.--|.+
T Consensus 57 ~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-------~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L 129 (370)
T PRK06294 57 HFIDTVFFGGGTPSLVPPALIQDILKTLEAPHA-------TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLL 129 (370)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHhCCC-------CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHH
Confidence 458899999999999999999999999987622 133334466665 78999999999999988766662
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
-+.++-.+.|+.+++.||. +.-.+ .++. | ..+.+.+ .+
T Consensus 130 ~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dl--i~Gl----------------P--------------gqt~~~~---~~ 174 (370)
T PRK06294 130 KLLGRTHSSSKAIDAVQECSEHGFSNLSIDL--IYGL----------------P--------------TQSLSDF---IV 174 (370)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeEEEEe--ecCC----------------C--------------CCCHHHH---HH
Confidence 3455666788899999886 22221 1111 1 0125667 78
Q ss_pred HHHHHHHccCcEEEE
Q 022296 200 RAERCLEAGADMIMI 214 (299)
Q Consensus 200 ~~~~dLeAGA~~VIi 214 (299)
.++..++.+.+.|-+
T Consensus 175 ~l~~~~~l~~~~is~ 189 (370)
T PRK06294 175 DLHQAITLPITHISL 189 (370)
T ss_pred HHHHHHccCCCeEEE
Confidence 888889999987754
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.024 Score=54.91 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=89.5
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 126 (299)
-|+.+-||+||..+.|.+.+++.++..+++ +.++ .|+.+.-+|+.+ ++.++.+++.||+.|.|+--|.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~ 125 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY---LSKD--CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLK 125 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh---cCCC--ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 589999999999999999999999999988 2333 255454455543 78999999999999998776662
Q ss_pred -----CChhHHHHHHHHHHHcCCccc-ceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 127 -----IPEETLLRYVRLVKSAGLKAK-PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~-~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-+.++-.+.|+.+++.||..+ ..+-. +. |. .+.+.+ .+.
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~--Gl----------------Pg--------------qt~~~~---~~~ 170 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFENISIDLIY--DT----------------PL--------------DNKKLL---KEE 170 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CC----------------CC--------------CCHHHH---HHH
Confidence 345666789999999998622 22211 11 10 125666 777
Q ss_pred HHHHHHccCcEEEEe
Q 022296 201 AERCLEAGADMIMID 215 (299)
Q Consensus 201 ~~~dLeAGA~~VIiE 215 (299)
++..++.|++.|-+-
T Consensus 171 l~~~~~l~~~~is~y 185 (350)
T PRK08446 171 LKLAKELPINHLSAY 185 (350)
T ss_pred HHHHHhcCCCEEEec
Confidence 788889999988653
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.022 Score=53.46 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=118.2
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022296 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (299)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (299)
.=+..+.+++- ...+|+......-||.+.+++..+. -+.+++-++.++++|..|+.+ +|.+....++.+
T Consensus 72 ~~~~~~~~~~~------~~~~~l~~a~~~gv~~iri~~~~~~---~~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~~~~ 140 (266)
T cd07944 72 TKIAVMVDYGN------DDIDLLEPASGSVVDMIRVAFHKHE---FDEALPLIKAIKEKGYEVFFN--LMAISGYSDEEL 140 (266)
T ss_pred CEEEEEECCCC------CCHHHHHHHhcCCcCEEEEeccccc---HHHHHHHHHHHHHCCCeEEEE--EEeecCCCHHHH
Confidence 34555555552 1466777777788999999987764 356899999999999988764 111223455688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.++++.+.+.|.+.|-+.|-.-.+.+++-.++++.++++ +..-..++..+. .|
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~i~~H~H-------n~------------------- 193 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN-LDKDIKLGFHAH-------NN------------------- 193 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeC-------CC-------------------
Confidence 899999999999999999999999999999999999873 110012344211 11
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
.... +..+...++|||+. |++- |+=...||.-++.+-..++
T Consensus 194 -------~Gla---~AN~laA~~aGa~~--vd~s~~G~G~~aGN~~~E~~v~~l~ 236 (266)
T cd07944 194 -------LQLA---LANTLEAIELGVEI--IDATVYGMGRGAGNLPTELLLDYLN 236 (266)
T ss_pred -------ccHH---HHHHHHHHHcCCCE--EEEecccCCCCcCcHHHHHHHHHHH
Confidence 2334 66678889999975 6775 8888999999888766664
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.068 Score=48.87 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=87.9
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCC
Q 022296 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPS 161 (299)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~-sevg~ 161 (299)
|.|+.++-++ -.+++.++.++++||+.||++-.. ...+.++..++-+.+++.|+++-+ +..-... -..+.
T Consensus 6 g~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~-~~~~~~~~~~~~~ 83 (284)
T PRK13210 6 GIYEKALPKH-LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS-MCLSGHRRFPFGS 83 (284)
T ss_pred chhhhhcCCC-CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE-EecccccCcCCCC
Confidence 4566666542 369999999999999999997322 244667778888889999988653 2210000 00000
Q ss_pred cccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccc-cCCC-cccH------HHHHH
Q 022296 162 DRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVC-KHAD-SLRA------DIIAK 233 (299)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~-d~~G-~~r~------d~i~~ 233 (299)
.|+ . .. +-.++.+ .+.++.+-+.||..|.+-+-..+ .... .... ..+.+
T Consensus 84 -~d~--------~--~r---------~~~~~~~---~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 140 (284)
T PRK13210 84 -RDP--------A--TR---------ERALEIM---KKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVE 140 (284)
T ss_pred -CCH--------H--HH---------HHHHHHH---HHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHH
Confidence 010 0 00 0013334 44455566789999988532211 1111 1111 22333
Q ss_pred HHhccCCCceEEec------CCchhHHHHHHHhC-CCcccccCCCCc
Q 022296 234 VIGRLGLEKTMFEA------TNPRTSEWFIRRYG-PKVNLFVDHSQV 273 (299)
Q Consensus 234 ii~~l~~eklifEA------P~k~qQ~~fI~~fG-~~VNLgI~~~eV 273 (299)
+++..|+ +|.+|. +...+-..+++.++ |+|.+..|+..+
T Consensus 141 ~a~~~gv-~l~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~~h~ 186 (284)
T PRK13210 141 QAAAAQV-MLAVEIMDTPFMNSISKWKKWDKEIDSPWLTVYPDVGNL 186 (284)
T ss_pred HHHHhCC-EEEEEecCccccCCHHHHHHHHHHcCCCceeEEecCChh
Confidence 4444554 577776 23456778899998 445554666554
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.099 Score=47.40 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=95.9
Q ss_pred HHHHHhhcccccEEEeeCcccc----cCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 44 EDIFESMGQFVDGLKFSGGSHS----LMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~----l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
-+.|..+| ||.+=+|+|.+. +++ ...+.++.+++.+ +.+.. +.++ . .+.++.+++.|++.
T Consensus 25 ~~~L~~~G--V~~IEvg~~~~~~~~p~~~--~~~~~i~~l~~~~~~~~~~~-------l~~~--~-~~~i~~a~~~g~~~ 90 (265)
T cd03174 25 AEALDEAG--VDSIEVGSGASPKAVPQME--DDWEVLRAIRKLVPNVKLQA-------LVRN--R-EKGIERALEAGVDE 90 (265)
T ss_pred HHHHHHcC--CCEEEeccCcCccccccCC--CHHHHHHHHHhccCCcEEEE-------EccC--c-hhhHHHHHhCCcCE
Confidence 34445555 999999999987 444 3456666666665 54421 1122 1 67789999999999
Q ss_pred EEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccC
Q 022296 118 IELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185 (299)
Q Consensus 118 IEISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (299)
|-|+....+. ..+.-.+.|+.+++.|+.+..-+-.- .. +
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~--~~---------------~------------ 141 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA--FG---------------C------------ 141 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee--cC---------------C------------
Confidence 9999876631 34556688999999998643322110 00 0
Q ss_pred CCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhc
Q 022296 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 186 ~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~ 237 (299)
..+++.+ .+.++...++||+.|. ++|..|...++.+.++++.
T Consensus 142 --~~~~~~l---~~~~~~~~~~g~~~i~-----l~Dt~G~~~P~~v~~li~~ 183 (265)
T cd03174 142 --KTDPEYV---LEVAKALEEAGADEIS-----LKDTVGLATPEEVAELVKA 183 (265)
T ss_pred --CCCHHHH---HHHHHHHHHcCCCEEE-----echhcCCcCHHHHHHHHHH
Confidence 0126677 7888889999999887 7788888888888888753
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.046 Score=48.90 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=26.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHH
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eK 75 (299)
.......+++..++++|++|.|..-..-+..+.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~i 50 (215)
T PRK13813 14 DRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEEL 50 (215)
T ss_pred CHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHHH
Confidence 4567788999999999999999655444554444443
|
|
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.037 Score=53.75 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=88.3
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL---- 125 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti---- 125 (299)
..|+-+-||+||..++|.+.|++.++.++++ ++.. . .|..+.-+|+.+ ++.++.++++||+.|.|.--|.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~--~--~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~ 133 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP--G--AEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHV 133 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCC--C--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH
Confidence 4589999999999999999999999999874 4422 1 133333344444 5799999999999999987666
Q ss_pred ------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhH
Q 022296 126 ------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKS 198 (299)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 198 (299)
..+.++-.+.++.+++.||. +...+-. +. | ..+.+.+ .
T Consensus 134 L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~--Gl----------------P--------------gqt~~~~---~ 178 (375)
T PRK05628 134 LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY--GT----------------P--------------GESDDDW---R 178 (375)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec--cC----------------C--------------CCCHHHH---H
Confidence 24566777889999999987 4333222 11 1 0125667 7
Q ss_pred HHHHHHHHccCcEEEE
Q 022296 199 RRAERCLEAGADMIMI 214 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIi 214 (299)
+.++..++.|.+.|-+
T Consensus 179 ~tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 179 ASLDAALEAGVDHVSA 194 (375)
T ss_pred HHHHHHHhcCCCEEEe
Confidence 7788889999988743
|
|
| >TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.073 Score=49.09 Aligned_cols=156 Identities=18% Similarity=0.266 Sum_probs=89.3
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCcc
Q 022296 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDR 163 (299)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~-~sevg~~~ 163 (299)
|+.++.++ -.+.+-++.++++||++||++-+. .+.+.++...+-+.+++.|+++.+ +..-.. ....+. .
T Consensus 8 ~~~~~~~~-~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~~-~ 84 (279)
T TIGR00542 8 YEKALPKG-ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPS-MCLSAHRRFPLGS-K 84 (279)
T ss_pred ehhhCCCC-CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCcee-eecCCCccCcCCC-c
Confidence 34555532 268888999999999999997443 355788888899999999998753 121000 000000 0
Q ss_pred cccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccc-cCC-CcccHH------HHHHHH
Q 022296 164 DRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVC-KHA-DSLRAD------IIAKVI 235 (299)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~-d~~-G~~r~d------~i~~ii 235 (299)
| |..+ +...+.+ -+.++.+-+.||..|.+-+.... ... .+.... .+.+++
T Consensus 85 ~--------~~~r-----------~~~~~~~---~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A 142 (279)
T TIGR00542 85 D--------KAVR-----------QQGLEIM---EKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELA 142 (279)
T ss_pred C--------HHHH-----------HHHHHHH---HHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 1 0000 0113344 45566677889999998775432 111 111111 223344
Q ss_pred hccCCCceEEec---C---CchhHHHHHHHhC-CCcccccCCCCc
Q 022296 236 GRLGLEKTMFEA---T---NPRTSEWFIRRYG-PKVNLFVDHSQV 273 (299)
Q Consensus 236 ~~l~~eklifEA---P---~k~qQ~~fI~~fG-~~VNLgI~~~eV 273 (299)
+..|+ +|.+|. | ...+-..+++..| |+|.+..|+..+
T Consensus 143 ~~~Gv-~l~lE~~~~~~~~t~~~~~~li~~v~~~~v~~~~D~~h~ 186 (279)
T TIGR00542 143 ARAQV-TLAVEIMDTPFMSSISKWLKWDHYLNSPWFTLYPDIGNL 186 (279)
T ss_pred HHcCC-EEEEeeCCCchhcCHHHHHHHHHHcCCCceEEEeCcChh
Confidence 55555 577885 1 3345567888888 555554566544
|
This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.11 Score=48.29 Aligned_cols=158 Identities=17% Similarity=0.159 Sum_probs=108.8
Q ss_pred HHHHHHHhhc-ccccEEEeeCcccccC-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHH
Q 022296 42 VLEDIFESMG-QFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (299)
Q Consensus 42 ~l~DlLe~ag-~yID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~ 109 (299)
.++..++.-. ..+|.+.+...+|-+. .-+.+++-++.++++|..++.+. |.+-...++.+.++.+.
T Consensus 74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~ 151 (268)
T cd07940 74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA--EDATRTDLDFLIEVVEA 151 (268)
T ss_pred hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee--ecCCCCCHHHHHHHHHH
Confidence 4444444322 2289999887665442 11457788999999999888652 22223345577888899
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
+.++|.+.|-+.|-+-.+.+++-.++++.+++.==..-..++..+. . |
T Consensus 152 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~H-n------~------------------------- 199 (268)
T cd07940 152 AIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCH-N------D------------------------- 199 (268)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEec-C------C-------------------------
Confidence 9999999999999999999999999999999841000012333211 0 1
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+...+++||++ |++. |+=+..||..++.+-..+...+
T Consensus 200 -~GlA---~An~laAi~aG~~~--iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 200 -LGLA---VANSLAAVEAGARQ--VECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred -cchH---HHHHHHHHHhCCCE--EEEEeeccccccccccHHHHHHHHHhcc
Confidence 2333 56667889999996 4776 8888999999988877775543
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.11 Score=48.91 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=96.6
Q ss_pred HHHHHHhhcccccEEEeeCccc--------ccCChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCc-hHHHHHHHHH
Q 022296 43 LEDIFESMGQFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPS-AFKEYVEDCK 111 (299)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs--------~l~p~~~l~eKI~l~~~~gV~v~~-Gt-lfE~a~~qg~~-~~~~yl~~~k 111 (299)
.-..|..+| ||.+=+|+|++ .-.|.+.+++..+...+..+.... |. +.- +..-|. -.++.++.+.
T Consensus 26 ia~~L~~~G--v~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~--~~~~p~~~~~~di~~~~ 101 (275)
T cd07937 26 IAEALDEAG--FFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVG--YRHYPDDVVELFVEKAA 101 (275)
T ss_pred HHHHHHHcC--CCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccC--ccCCCcHHHHHHHHHHH
Confidence 344677778 99999999884 344444444444433222221110 10 000 111122 3788999999
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccch
Q 022296 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEV 191 (299)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (299)
+.|.+.|-|++..-++ +.-...|+.+++.|++|.. .+.+..+ + ..++
T Consensus 102 ~~g~~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~--~i~~~~~---~--------------------------~~~~ 148 (275)
T cd07937 102 KNGIDIFRIFDALNDV--RNLEVAIKAVKKAGKHVEG--AICYTGS---P--------------------------VHTL 148 (275)
T ss_pred HcCCCEEEEeecCChH--HHHHHHHHHHHHCCCeEEE--EEEecCC---C--------------------------CCCH
Confidence 9999999998766654 4556799999999987653 4421110 0 0126
Q ss_pred hhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 192 GVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 192 ~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+.+ ++.++.-.++||+.|- |.|..|...+..+.+++..+
T Consensus 149 ~~~---~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (275)
T cd07937 149 EYY---VKLAKELEDMGADSIC-----IKDMAGLLTPYAAYELVKAL 187 (275)
T ss_pred HHH---HHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 677 8888889999999874 78899999988888887654
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.17 Score=47.06 Aligned_cols=135 Identities=16% Similarity=0.231 Sum_probs=91.5
Q ss_pred chhHHHHHHHhhcccccEEEe------------eCcccccCChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchH
Q 022296 39 SHNVLEDIFESMGQFVDGLKF------------SGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAF 103 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKf------------g~GTs~l~p~~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~ 103 (299)
.+..+..+.+...+|.|++=+ |.|++.+.+++.+.+.++..++.+++|+- -++ .....
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~-------~~~~~ 150 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC-------IPLDE 150 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC-------CcchH
Confidence 456777777777777777765 67778899999999999999998887763 122 11134
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.++.+.+.+.|.+.|-|..+.-.-+.-+ .++|+++++. +.-+|=+|. . +|
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~~g~~~a~-~~~I~~i~~~-~~~ipIIgN---G-gI------------------------ 200 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMYPGKPYAD-MDLLKILSEE-FNDKIIIGN---N-SI------------------------ 200 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCCCCCchhh-HHHHHHHHHh-cCCCcEEEE---C-Cc------------------------
Confidence 5778889999999999975443222233 5889999884 111444444 1 11
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
.+ .+.+.+.|++||+.||| ||++..++
T Consensus 201 ---~s---------~eda~e~l~~GAd~Vmv-gR~~l~~~ 227 (231)
T TIGR00736 201 ---DD---------IESAKEMLKAGADFVSV-ARAILKGN 227 (231)
T ss_pred ---CC---------HHHHHHHHHhCCCeEEE-cHhhccCC
Confidence 01 45568888999999998 55665443
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.56 Score=41.40 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=58.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCc-HHHHHHHhCCchHHHH-HHHHHHcCC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD-WAEHLIRNGPSAFKEY-VEDCKQVGF 115 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~Gt-lfE~a~~qg~~~~~~y-l~~~k~lGF 115 (299)
.+.....+.+..+..||++|+|+ +...+.. ++..-++.+.| +..+.-++ ++ +|. .| ++.+.+.|.
T Consensus 10 ~~~~a~~~~~~l~~~v~~iev~~--~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~------d~~---~~~~~~~~~~Ga 77 (206)
T TIGR03128 10 DIEEALELAEKVADYVDIIEIGT--PLIKNEG-IEAVKEMKEAFPDRKVLADLKTM------DAG---EYEAEQAFAAGA 77 (206)
T ss_pred CHHHHHHHHHHcccCeeEEEeCC--HHHHHhC-HHHHHHHHHHCCCCEEEEEEeec------cch---HHHHHHHHHcCC
Confidence 55677778888899999999963 3333321 32222333333 33333332 22 322 34 677889999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 022296 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E 149 (299)
|+|=+.--+ +...-.++++.+++.|+++.++
T Consensus 78 d~i~vh~~~---~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 78 DIVTVLGVA---DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred CEEEEeccC---CHHHHHHHHHHHHHcCCEEEEE
Confidence 999655322 3445578999999998876664
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.047 Score=53.47 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=89.5
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (299)
.-|+-+=||+||..+.+.+.|.+.++.++++= .+.++ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARL-PFAPD--AEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhC-CCCCC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 45889999999999999999999999998751 11122 34444444443 358899999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-+.++-.+.|+.+++.||...+ +...++.. + .+.+.+ .+.
T Consensus 134 ~~l~r~~~~~~~~~ai~~~~~~G~~~v~-~dli~Glp-----g-------------------------qt~~~~---~~~ 179 (378)
T PRK05660 134 KRLGRIHGPDEAKRAAKLAQGLGLRSFN-LDLMHGLP-----D-------------------------QSLEEA---LDD 179 (378)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCCC-----C-------------------------CCHHHH---HHH
Confidence 3566777889999999997422 22222211 1 125667 788
Q ss_pred HHHHHHccCcEEE
Q 022296 201 AERCLEAGADMIM 213 (299)
Q Consensus 201 ~~~dLeAGA~~VI 213 (299)
++..++.|.+.|-
T Consensus 180 l~~~~~l~p~~is 192 (378)
T PRK05660 180 LRQAIALNPPHLS 192 (378)
T ss_pred HHHHHhcCCCeEE
Confidence 8889999999884
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.13 Score=50.63 Aligned_cols=149 Identities=19% Similarity=0.227 Sum_probs=110.2
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~ 110 (299)
.++..+++ -+|.+-+...+|-++-+ +.+++-++.++++|..|+.+ +|.+-..+++.+.++++.+
T Consensus 80 di~~a~~~---g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~ 154 (378)
T PRK11858 80 DIDASIDC---GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--AEDASRTDLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHhC---CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eccCCCCCHHHHHHHHHHH
Confidence 44444443 47888888887776433 45778899999999988765 4555556667889999999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccc
Q 022296 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIE 190 (299)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
.+.|.+.|-+.|-.-.+.+++-.++|+.+++.= . ..+++.+. . |
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~--~~l~~H~H-n------d-------------------------- 198 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYELVKELVEAV-D--IPIEVHCH-N------D-------------------------- 198 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-C--CeEEEEec-C------C--------------------------
Confidence 999999999999999999999999999998752 2 23555322 1 1
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
.... .-.+...++|||++| ++- |+=+..||...+.+-..+.
T Consensus 199 ~GlA---~AN~laAv~aGa~~v--d~tv~GlGeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 199 FGMA---TANALAGIEAGAKQV--HTTVNGLGERAGNAALEEVVMALK 241 (378)
T ss_pred cCHH---HHHHHHHHHcCCCEE--EEeeccccccccCccHHHHHHHHH
Confidence 2233 555677899999975 664 8889999999887665554
|
|
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.056 Score=54.07 Aligned_cols=127 Identities=17% Similarity=0.336 Sum_probs=87.6
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (299)
-|+-+-||+||..+++.+.+.+.++.++++ ..+..+ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~-~~~~~~--~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~ 178 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIREN-FPFNAD--AEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQ 178 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHh-CCCCCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHH
Confidence 477889999999999999999999999986 111112 23333233333 368999999999999999866653
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHH
Q 022296 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRA 201 (299)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 201 (299)
-+.++-.+.|+.+++.|++.. -+...++.. + .+.+.+ .+.+
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~GlP-----g-------------------------qt~e~~---~~tl 224 (455)
T TIGR00538 179 AVNRIQPEEMIFELMNHAREAGFTSI-NIDLIYGLP-----K-------------------------QTKESF---AKTL 224 (455)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcE-EEeEEeeCC-----C-------------------------CCHHHH---HHHH
Confidence 455666789999999998621 122222211 1 125666 7777
Q ss_pred HHHHHccCcEEEEec
Q 022296 202 ERCLEAGADMIMIDS 216 (299)
Q Consensus 202 ~~dLeAGA~~VIiEa 216 (299)
+..++.|++.|-+-.
T Consensus 225 ~~~~~l~~~~is~y~ 239 (455)
T TIGR00538 225 EKVAELNPDRLAVFN 239 (455)
T ss_pred HHHHhcCCCEEEEec
Confidence 888889999886653
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.16 Score=49.70 Aligned_cols=147 Identities=19% Similarity=0.243 Sum_probs=108.0
Q ss_pred cccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022296 51 GQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (299)
Q Consensus 51 g~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (299)
..-+|.+-+...+|-++-+ +.+++-|+.++++|..|+.+ +|.+-...++.+.++.+.+.+.|.+.|-
T Consensus 83 ~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i~ 160 (365)
T TIGR02660 83 RCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG--GEDASRADPDFLVELAEVAAEAGADRFR 160 (365)
T ss_pred cCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe--ecCCCCCCHHHHHHHHHHHHHcCcCEEE
Confidence 3457888888877754332 23558899999999988866 4555556667888999999999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
+.|-.--+.+++-.++|+.+++. +.+ .+++.+. .+ .... +-
T Consensus 161 l~DT~G~~~P~~v~~lv~~l~~~-~~v--~l~~H~H-Nd--------------------------------~GlA---~A 201 (365)
T TIGR02660 161 FADTVGILDPFSTYELVRALRQA-VDL--PLEMHAH-ND--------------------------------LGMA---TA 201 (365)
T ss_pred EcccCCCCCHHHHHHHHHHHHHh-cCC--eEEEEec-CC--------------------------------CChH---HH
Confidence 99999999999999999999874 122 2454321 11 2233 55
Q ss_pred HHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHH-hccCC
Q 022296 200 RAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI-GRLGL 240 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii-~~l~~ 240 (299)
.+...++|||++| ++- |+=+..||.-.+.+-..+ ...|.
T Consensus 202 NalaA~~aGa~~v--d~tl~GiGeraGN~~lE~lv~~L~~~~g~ 243 (365)
T TIGR02660 202 NTLAAVRAGATHV--NTTVNGLGERAGNAALEEVAMALKRLLGR 243 (365)
T ss_pred HHHHHHHhCCCEE--EEEeeccccccccCCHHHHHHHHHHhcCC
Confidence 6678999999964 765 888999999888776665 43443
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.13 Score=50.14 Aligned_cols=151 Identities=13% Similarity=0.172 Sum_probs=102.1
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (299)
..++-+=||+||..+.+.+.|++.++.++++ + .++ .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 55 ~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~-~--~~~--~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL 129 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLNDQLLDILLSTIKPY-V--DNN--CEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNIL 129 (353)
T ss_pred CCeEEEEECCCccccCCHHHHHHHHHHHHHh-c--CCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 5588899999999999999999999999997 2 223 355555566654 6999999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 126 -----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
.-+.++-.+.|+.+++.||. +-..+ .++. |. .+.+.+ .+
T Consensus 130 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dl--I~Gl----------------Pg--------------qt~e~~---~~ 174 (353)
T PRK05904 130 KQLNRTHTIQDSKEAINLLHKNGIYNISCDF--LYCL----------------PI--------------LKLKDL---DE 174 (353)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEE--eecC----------------CC--------------CCHHHH---HH
Confidence 34566777899999999986 22222 1111 10 114556 66
Q ss_pred HHHHHHHccCcEEEEecc------ccccCCCcccH-------HHHHHHHhccCCCc
Q 022296 200 RAERCLEAGADMIMIDSD------DVCKHADSLRA-------DIIAKVIGRLGLEK 242 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEar------gi~d~~G~~r~-------d~i~~ii~~l~~ek 242 (299)
.++...+.+.++|-+-.= .+++....+.. ..+.+++...|.++
T Consensus 175 tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 230 (353)
T PRK05904 175 VFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKR 230 (353)
T ss_pred HHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcE
Confidence 677778899998866541 24443322322 23455566666554
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.11 Score=51.40 Aligned_cols=125 Identities=17% Similarity=0.273 Sum_probs=88.4
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (299)
.-|+-+=||+||..++|.+.|++.++..+++ ..+.+. .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 65 ~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~-~~~~~~--~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L 141 (400)
T PRK07379 65 QPLQTVFFGGGTPSLLSVEQLERILTTLDQR-FGIAPD--AEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELL 141 (400)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHH
Confidence 4589999999999999999999999999876 222222 244444445444 5799999999999998876655
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
..+.++-.+.++.+++.||.... +...++. |. .+.+.+ .+.
T Consensus 142 ~~l~R~~~~~~~~~ai~~l~~~G~~~v~-~dlI~Gl----------------Pg--------------qt~e~~---~~t 187 (400)
T PRK07379 142 ALCGRSHRVKDIFAAVDLIHQAGIENFS-LDLISGL----------------PH--------------QTLEDW---QAS 187 (400)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC--------------CCHHHH---HHH
Confidence 45667778899999999987211 1222221 10 125566 777
Q ss_pred HHHHHHccCcEEE
Q 022296 201 AERCLEAGADMIM 213 (299)
Q Consensus 201 ~~~dLeAGA~~VI 213 (299)
++..++.+.+.|-
T Consensus 188 l~~~~~l~p~~is 200 (400)
T PRK07379 188 LEAAIALNPTHLS 200 (400)
T ss_pred HHHHHcCCCCEEE
Confidence 8888889998883
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.068 Score=51.77 Aligned_cols=125 Identities=14% Similarity=0.207 Sum_probs=87.8
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 126 (299)
-|+.+=||+||..+.+++.|.+.++..+++- .+..+ .|+.+.-+|+.+ ++.++.++++|++.|.|+--+.+
T Consensus 51 ~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~ 127 (360)
T TIGR00539 51 PLESIFIGGGTPNTLSVEAFERLFESIYQHA-SLSDD--CEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLL 127 (360)
T ss_pred cccEEEeCCCchhcCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHH
Confidence 4889999999999999999999999987641 11122 344444455544 58899999999999999877662
Q ss_pred -----CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 127 -----IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-+.++-.+.|+.+++.||. +...+ .++. |. .+.+.+ .+.
T Consensus 128 ~lgR~~~~~~~~~ai~~l~~~G~~~v~~dl--i~Gl----------------Pg--------------qt~~~~---~~~ 172 (360)
T TIGR00539 128 FLGRQHSAKNIAPAIETALKSGIENISLDL--MYGL----------------PL--------------QTLNSL---KEE 172 (360)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEEEec--cCCC----------------CC--------------CCHHHH---HHH
Confidence 4667778899999999986 22211 1111 10 125566 677
Q ss_pred HHHHHHccCcEEEEe
Q 022296 201 AERCLEAGADMIMID 215 (299)
Q Consensus 201 ~~~dLeAGA~~VIiE 215 (299)
++..++.|++.|-+=
T Consensus 173 l~~~~~l~~~~is~y 187 (360)
T TIGR00539 173 LKLAKELPINHLSAY 187 (360)
T ss_pred HHHHHccCCCEEEee
Confidence 788888999888543
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.21 Score=49.21 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=106.1
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccC--------ChhHH---HHHHHHHHhCCceec------CCcHHHHHHHhCCch
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLM--------PKPFI---EEVVKRAHQHDVYVS------TGDWAEHLIRNGPSA 102 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~--------p~~~l---~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~ 102 (299)
...++..+++- +|.+-+...+|-.+ +++.+ ++-|++++++|..|. .|..++. .-+++.
T Consensus 124 ~~die~A~~~g---~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~--r~~~~~ 198 (347)
T PLN02746 124 LKGFEAAIAAG---AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEG--PVPPSK 198 (347)
T ss_pred HHHHHHHHHcC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccC--CCCHHH
Confidence 34555556553 56666665554322 33334 489999999999773 2433332 235568
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
+.++.+.+.+.|.+.|-|.|-.--+.+.+-.++++.+++. +. ..+++..+.. |
T Consensus 199 l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~-~~-~~~i~~H~Hn-------d------------------ 251 (347)
T PLN02746 199 VAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV-VP-VDKLAVHFHD-------T------------------ 251 (347)
T ss_pred HHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh-CC-CCeEEEEECC-------C------------------
Confidence 8899999999999999999999999999999999999874 22 1236664321 1
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc------CCCcccHHHHHHHHhccC
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLG 239 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d------~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+-..++|||++|=.=--||=. ..||.-++.+-..++.+|
T Consensus 252 --------~GlA---~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G 303 (347)
T PLN02746 252 --------YGQA---LANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLG 303 (347)
T ss_pred --------CChH---HHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcC
Confidence 2333 666788999999975333347765 689988777666665444
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.26 Score=46.99 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=103.0
Q ss_pred cccccEEEeeCcccccCChh-----------HHHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHc
Q 022296 51 GQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~~~~yl~~~k~l 113 (299)
..-+|.+-+...+|-.+.+. .+++-|+.++++|..+. .|..++. .-.++.+.++.+.+.++
T Consensus 90 ~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 90 AAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEG--EVPPEAVADVAERLFAL 167 (287)
T ss_pred HcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCC--CCCHHHHHHHHHHHHHc
Confidence 33577777777776553332 37789999999999874 2333333 23445788889999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhh
Q 022296 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGV 193 (299)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (299)
|.+.|-+.|-.--+.+.+-.++|+.+++. +.. ..+++.+. .+ ...
T Consensus 168 G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~i~~H~H-n~--------------------------------~Gl 212 (287)
T PRK05692 168 GCYEISLGDTIGVGTPGQVRAVLEAVLAE-FPA-ERLAGHFH-DT--------------------------------YGQ 212 (287)
T ss_pred CCcEEEeccccCccCHHHHHHHHHHHHHh-CCC-CeEEEEec-CC--------------------------------CCc
Confidence 99999999999999999999999999984 211 13555322 11 223
Q ss_pred hhhhHHHHHHHHHccCcEEEEecc--cccc------CCCcccHHHHHHHHhccC
Q 022296 194 GINKSRRAERCLEAGADMIMIDSD--DVCK------HADSLRADIIAKVIGRLG 239 (299)
Q Consensus 194 ~~~~i~~~~~dLeAGA~~VIiEar--gi~d------~~G~~r~d~i~~ii~~l~ 239 (299)
. +..+-..++|||++ +++. ||=. ..||.-.+.+-..++..|
T Consensus 213 a---~AN~laA~~aG~~~--id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g 261 (287)
T PRK05692 213 A---LANIYASLEEGITV--FDASVGGLGGCPYAPGASGNVATEDVLYMLHGLG 261 (287)
T ss_pred H---HHHHHHHHHhCCCE--EEEEccccCCCCCCCCccccccHHHHHHHHHhcC
Confidence 3 56667899999997 4554 7755 688988887766665444
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.25 Score=45.84 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
+.++++++++.+.|.+.|=+...+ ..|+.++|.++++.+.+.- ...+.+-. |
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~---~~~~~vi~-----g----------------- 72 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV---AGRVPVIA-----G----------------- 72 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh---CCCCeEEE-----e-----------------
Confidence 368899999999999999665443 4899999999999998841 11111100 0
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CcccH
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRA 228 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~----G~~r~ 228 (299)
+...+..+. +++++..-++|||.|++=.- -||+.- -.+..
T Consensus 73 --------v~~~~~~~~---i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~ 141 (281)
T cd00408 73 --------VGANSTREA---IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSP 141 (281)
T ss_pred --------cCCccHHHH---HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCH
Confidence 011124556 89999999999999999763 145442 24556
Q ss_pred HHHHHHHhccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 229 DIIAKVIGRLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 229 d~i~~ii~~l~-~eklifEAP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
+++.++++ .+ +-=+=...++..+...+++..++++.++... |-.-++.|..|--|
T Consensus 142 ~~~~~L~~-~~~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~-d~~~~~~l~~G~~G 197 (281)
T cd00408 142 ETIARLAE-HPNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGD-DDLLLPALALGADG 197 (281)
T ss_pred HHHHHHhc-CCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcc-hHHHHHHHHcCCCE
Confidence 67776664 22 1112234556667777777777776665444 44555666655433
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.19 Score=50.43 Aligned_cols=126 Identities=20% Similarity=0.370 Sum_probs=89.1
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (299)
-|+-+=||+||..+.|++.|++.++.++++ ++ .++ .|+.+.-+|..+ ++.++.++++||+.|.|+--+.+
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~--~~~--~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl 178 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDF--APE--AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQ 178 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCC--CCC--ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 367788999999999999999999999886 22 111 233333334333 78999999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-+.++-.+.|+.+++.||..+. +...++.. + .+.+.+ .+.
T Consensus 179 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~-~dli~GlP-----g-------------------------qt~e~~---~~t 224 (453)
T PRK13347 179 KAINRIQPEEMVARAVELLRAAGFESIN-FDLIYGLP-----H-------------------------QTVESF---RET 224 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCcEE-EeEEEeCC-----C-------------------------CCHHHH---HHH
Confidence 5677778999999999986211 11111110 1 125667 778
Q ss_pred HHHHHHccCcEEEEec
Q 022296 201 AERCLEAGADMIMIDS 216 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEa 216 (299)
++..++.|.+.|-+-+
T Consensus 225 l~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 225 LDKVIALSPDRIAVFG 240 (453)
T ss_pred HHHHHhcCCCEEEEec
Confidence 8888999999987754
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.33 Score=45.56 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=101.5
Q ss_pred cccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCC-c-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 51 GQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 51 g~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~G-t-lfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
..-+|.+.+...+|-.+.+ +.+++-++++|++|..|+.+ . +++. ..-.++.+.++++.+.+.|.+.
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~ 167 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADW 167 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCE
Confidence 3356777777666544322 24688999999999988775 2 3231 1223456777888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhh
Q 022296 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINK 197 (299)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (299)
|-|.|-.-.+.+++-.++++.++++ +. -..+++.+. . | ....
T Consensus 168 i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~l~~H~H-n------d--------------------------~Gla--- 209 (273)
T cd07941 168 LVLCDTNGGTLPHEIAEIVKEVRER-LP-GVPLGIHAH-N------D--------------------------SGLA--- 209 (273)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh-CC-CCeeEEEec-C------C--------------------------CCcH---
Confidence 9999999999999999999999984 11 012444221 1 1 2233
Q ss_pred HHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 198 SRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
...+-..++|||++ +++. |+=+..||...+.+-..+.
T Consensus 210 ~An~laA~~aGa~~--id~s~~GlGeraGn~~~e~~~~~L~ 248 (273)
T cd07941 210 VANSLAAVEAGATQ--VQGTINGYGERCGNANLCSIIPNLQ 248 (273)
T ss_pred HHHHHHHHHcCCCE--EEEeccccccccccccHHHHHHHHH
Confidence 56667889999996 6765 8989999988876665554
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.14 Score=50.96 Aligned_cols=127 Identities=11% Similarity=0.202 Sum_probs=87.0
Q ss_pred ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 022296 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 126 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 126 (299)
|.-+=||+||-.+++.+.|++.++.++++- .+.++. .|+.+.-+|+.+ ++.++.++++||+.|.|.--|.+
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~-~~~~~~-~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 169 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVL-GVDLGN-IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHA 169 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhC-CCCCCC-ceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 667789999999999999999999998652 122211 244333344444 78999999999999999877662
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHH
Q 022296 127 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAE 202 (299)
Q Consensus 127 ----i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 202 (299)
-+.++-.+.|+.+++.||.+.. +...++.. + .+.+.+ .+.++
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~i~-~dlI~GlP-----~-------------------------qt~e~~---~~~l~ 215 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPILN-IDLIYGIP-----G-------------------------QTHASW---MESLD 215 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCCC-----C-------------------------CCHHHH---HHHHH
Confidence 3556677899999999986421 12222211 1 125666 67777
Q ss_pred HHHHccCcEEEEec
Q 022296 203 RCLEAGADMIMIDS 216 (299)
Q Consensus 203 ~dLeAGA~~VIiEa 216 (299)
..++.|.+.|-+=.
T Consensus 216 ~~~~l~~~~is~y~ 229 (430)
T PRK08208 216 QALVYRPEELFLYP 229 (430)
T ss_pred HHHhCCCCEEEEcc
Confidence 78889998776544
|
|
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.29 Score=46.72 Aligned_cols=151 Identities=15% Similarity=0.209 Sum_probs=96.9
Q ss_pred EEeeCcccccCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcc--------
Q 022296 57 LKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSL-------- 125 (299)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti-------- 125 (299)
+=||.||....|.+.|++.++.++++. +.++.+|=-+.+ +...-+.++.+++.|+ ..||+.-=|.
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l----~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV----PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC----CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 669999999999999999999998763 122222211111 1133456666667799 4688743333
Q ss_pred --cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHH
Q 022296 126 --EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAER 203 (299)
Q Consensus 126 --~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 203 (299)
..+.++..+.++.++++|+++...+=+ +.. ++ +.+.+ ++.++.
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~--GlP-----ge-------------------------t~e~~---~~t~~~ 201 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKVCSHVIL--GLP-----GE-------------------------DREEM---METAKI 201 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEEEEeEEE--CCC-----CC-------------------------CHHHH---HHHHHH
Confidence 235678889999999999987664433 210 11 14566 788888
Q ss_pred HHHccCcEEEE------ecccccc--CCCccc-------HHHHHHHHhccCCCceEEe
Q 022296 204 CLEAGADMIMI------DSDDVCK--HADSLR-------ADIIAKVIGRLGLEKTMFE 246 (299)
Q Consensus 204 dLeAGA~~VIi------Eargi~d--~~G~~r-------~d~i~~ii~~l~~eklifE 246 (299)
..+.+.+.|-+ ++-.+++ ..|.+. .+++..+++.++++.+|+-
T Consensus 202 l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~R 259 (302)
T TIGR01212 202 VSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHR 259 (302)
T ss_pred HHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEE
Confidence 88999997765 2222322 234443 3455677788998888776
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.21 Score=46.56 Aligned_cols=141 Identities=14% Similarity=0.172 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +...+-+-
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~---~~~~~~vi----------------------- 73 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEA---VNGRVPVI----------------------- 73 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHH---hCCCCcEE-----------------------
Confidence 368889999999999999887 666 99999999999999984 11111110
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccc-------------------------cccCC---C-ccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDD-------------------------VCKHA---D-SLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEarg-------------------------i~d~~---G-~~r 227 (299)
++....+.++. +++++..-++||+.|++=.-. ||+.- | .+-
T Consensus 74 -------~gv~~~~~~~~---~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls 143 (284)
T cd00950 74 -------AGTGSNNTAEA---IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIE 143 (284)
T ss_pred -------eccCCccHHHH---HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCC
Confidence 00111225667 999999999999999997631 44431 2 345
Q ss_pred HHHHHHHHhccCCCceE-E-ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcc
Q 022296 228 ADIIAKVIGRLGLEKTM-F-EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGR 282 (299)
Q Consensus 228 ~d~i~~ii~~l~~ekli-f-EA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~ 282 (299)
.+++.+|++ .+ +++ + ++ ++...-..+++++++++.++...++ .-+..++.|
T Consensus 144 ~~~~~~L~~-~p--~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~-~~~~~~~~G 197 (284)
T cd00950 144 PETVLRLAE-HP--NIVGIKEATGDLDRVSELIALCPDDFAVLSGDDA-LTLPFLALG 197 (284)
T ss_pred HHHHHHHhc-CC--CEEEEEECCCCHHHHHHHHHhCCCCeEEEeCChH-hHHHHHHCC
Confidence 666666663 22 221 1 22 3344444556666776666544433 344556544
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.41 Score=45.54 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. .+-+.+. +
T Consensus 29 ~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~-------~~~~~pv--------------i------- 80 (303)
T PRK03620 29 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVET-------TAGRVPV--------------I------- 80 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH-------hCCCCcE--------------E-------
Confidence 68888999999999999775433 589999999999988873 2111000 0
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-cccHHHHH
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIA 232 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~G-~~r~d~i~ 232 (299)
++... +..+. ++.++..-++||+.|++=.- -||+..| .+-.+++.
T Consensus 81 -----~gv~~-~t~~~---i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~ 151 (303)
T PRK03620 81 -----AGAGG-GTAQA---IEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLA 151 (303)
T ss_pred -----EecCC-CHHHH---HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHH
Confidence 00011 14556 88889999999999998652 2677666 66788888
Q ss_pred HHHhccCCCceEE---ecCCchhHHHHHHHhCCCcccc--cCCCCchhhhhhhcccCC
Q 022296 233 KVIGRLGLEKTMF---EATNPRTSEWFIRRYGPKVNLF--VDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 233 ~ii~~l~~eklif---EAP~k~qQ~~fI~~fG~~VNLg--I~~~eVi~LE~LR~~~~G 285 (299)
++.++.+ +|+. ..++..+...++++++++..+. -+.+|.+.+.++..|.-|
T Consensus 152 ~L~~~~p--ni~giK~s~~d~~~~~~~~~~~~~~f~vl~G~d~~e~~~~~~~~~G~~G 207 (303)
T PRK03620 152 RLAERCP--NLVGFKDGVGDIELMQRIVRALGDRLLYLGGLPTAEVFAAAYLALGVPT 207 (303)
T ss_pred HHHhhCC--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCE
Confidence 8875554 4443 3466777778888888876654 433567777777755544
|
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.12 Score=51.87 Aligned_cols=127 Identities=18% Similarity=0.319 Sum_probs=88.2
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (299)
-|+.+=||+||..+++.+.|.+.++.++++ ..+.++ .|+.+.-+|+. -++.++.+++.|++.|.|+--+.+
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~-~~~~~~--~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~ 178 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMALLREH-FNFAPD--AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQK 178 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 488999999999999999999999999886 111222 12233233333 368999999999999999876663
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHH
Q 022296 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRA 201 (299)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 201 (299)
-+.++-.+.|+.+++.||... -+...++.. + .+.+.+ .+.+
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~GlP-----g-------------------------qt~e~~---~~~l 224 (453)
T PRK09249 179 AVNRIQPFEFTFALVEAARELGFTSI-NIDLIYGLP-----K-------------------------QTPESF---ARTL 224 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCcE-EEEEEccCC-----C-------------------------CCHHHH---HHHH
Confidence 566777889999999998421 122222211 1 125566 6777
Q ss_pred HHHHHccCcEEEEec
Q 022296 202 ERCLEAGADMIMIDS 216 (299)
Q Consensus 202 ~~dLeAGA~~VIiEa 216 (299)
+..++.|++.|-+-.
T Consensus 225 ~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 225 EKVLELRPDRLAVFN 239 (453)
T ss_pred HHHHhcCCCEEEEcc
Confidence 888889999886654
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.3 Score=45.86 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.++++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +...+.+- +|
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~---~~~~~~vi-----~g----------------- 76 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEA---VNGRVPVI-----AG----------------- 76 (292)
T ss_pred HHHHHHHHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHH---hCCCCcEE-----ee-----------------
Confidence 68889999999999999884 665 89999999999999883 11111110 00
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
+...+.++. +++++..-++||+.|++=.
T Consensus 77 --------v~~~~~~~~---i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 77 --------TGSNSTAEA---IELTKFAEKAGADGALVVT 104 (292)
T ss_pred --------cCCchHHHH---HHHHHHHHHcCCCEEEECC
Confidence 011225667 8999999999999999965
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.25 Score=46.45 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=105.3
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccC-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~ 108 (299)
...++-.+++ =+|.+-+...+|-.+ .-+.+++-++.++++|+.|+.+- |.+..-.++.+.++++
T Consensus 74 ~~di~~a~~~---g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--eda~r~~~~~l~~~~~ 148 (262)
T cd07948 74 MDDARIAVET---GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--EDSFRSDLVDLLRVYR 148 (262)
T ss_pred HHHHHHHHHc---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeeCCCCHHHHHHHHH
Confidence 3455555554 456666665544221 12235566799999999877642 3344444567889999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+.++|.+.|-+.|-+--+.+++-.++++.+++. +. ..++..+.. |
T Consensus 149 ~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~-~~--~~i~~H~Hn-------~------------------------ 194 (262)
T cd07948 149 AVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV-VS--CDIEFHGHN-------D------------------------ 194 (262)
T ss_pred HHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh-cC--CeEEEEECC-------C------------------------
Confidence 9999999999999999999999999999999884 22 345553221 1
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
...- +..+...++|||++ +++. |+=+..||.-.+.+-..+.
T Consensus 195 --~Gla---~an~~~a~~aG~~~--vd~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 195 --TGCA---IANAYAALEAGATH--IDTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred --CChH---HHHHHHHHHhCCCE--EEEeccccccccCCccHHHHHHHHH
Confidence 2223 55667899999995 7776 9999999998877766664
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.27 Score=46.65 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=103.7
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhH-----------HHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPF-----------IEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~-----------l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~ 108 (299)
.++..+++- +|.+.+...+|-.+.+.. +++-++.++++|..|..+ +|.- .+.-.|+.+.++.+
T Consensus 79 ~~~~A~~~g---~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~-~~r~~~~~~~~~~~ 154 (280)
T cd07945 79 SVDWIKSAG---AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSN-GMRDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHCC---CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCC-CCcCCHHHHHHHHH
Confidence 344444443 456667666654443322 566689999999987764 4321 11445668899999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+.++|.+.|-+.|-.--+.+.+-.++++.+++. + ....++..+.. |
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~-~-~~~~i~~H~Hn-------d------------------------ 201 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR-Y-PNLHFDFHAHN-------D------------------------ 201 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh-C-CCCeEEEEeCC-------C------------------------
Confidence 9999999999999999999999999999999873 1 11234543211 1
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHH
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 235 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii 235 (299)
.... +..+...++|||++ +++- |+=+..||...+.+-..+
T Consensus 202 --~Gla---~AN~laA~~aGa~~--vd~s~~GlGe~aGN~~~E~~v~~L 243 (280)
T cd07945 202 --YDLA---VANVLAAVKAGIKG--LHTTVNGLGERAGNAPLASVIAVL 243 (280)
T ss_pred --CCHH---HHHHHHHHHhCCCE--EEEecccccccccCccHHHHHHHH
Confidence 2333 66668899999995 6665 888999998887776655
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.57 Score=46.14 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=93.7
Q ss_pred HHHHHHHhhcccccEEEeeCc-----ccc-cCChhHHHHHHHHHHhCCceecC-C-cHHHHHHHhCCchHHHHHHHHHHc
Q 022296 42 VLEDIFESMGQFVDGLKFSGG-----SHS-LMPKPFIEEVVKRAHQHDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~G-----Ts~-l~p~~~l~eKI~l~~~~gV~v~~-G-tlfE~a~~qg~~~~~~yl~~~k~l 113 (299)
.++++-.......|-+=+|.- ..+ -++.+.|++-|+++|+||+++|- . +++--.-. ..+.+|++.+.++
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~---~~~~~~l~~l~e~ 91 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDEL---ETLERYLDRLVEL 91 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchh---hHHHHHHHHHHHc
Confidence 455555554444787777743 122 24556699999999999996663 4 54322111 1478999999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcC--CcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccch
Q 022296 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAG--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEV 191 (299)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G--~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (299)
|.|+|+++| .-+|..+++.| +. +.+....+ ...
T Consensus 92 GvDaviv~D----------pg~i~l~~e~~p~l~----ih~S~q~~----------------------------v~N--- 126 (347)
T COG0826 92 GVDAVIVAD----------PGLIMLARERGPDLP----IHVSTQAN----------------------------VTN--- 126 (347)
T ss_pred CCCEEEEcC----------HHHHHHHHHhCCCCc----EEEeeeEe----------------------------cCC---
Confidence 999999999 57899999876 33 33310000 000
Q ss_pred hhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC---CCceEEecC
Q 022296 192 GVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG---LEKTMFEAT 248 (299)
Q Consensus 192 ~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~---~eklifEAP 248 (299)
-++++-.-+.|| ..+|=+| +++.+.|.+|.++++ +|-+.+.|-
T Consensus 127 ------~~~~~f~~~~G~-~rvVl~r-------Els~~ei~~i~~~~~~veiEvfVhGal 172 (347)
T COG0826 127 ------AETAKFWKELGA-KRVVLPR-------ELSLEEIKEIKEQTPDVEIEVFVHGAL 172 (347)
T ss_pred ------HHHHHHHHHcCC-EEEEeCc-------cCCHHHHHHHHHhCCCceEEEEEecch
Confidence 345577888894 4555566 556777888887764 556666653
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.57 Score=44.23 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
.++++++++-+.|.+.|=+.-.| ..|+.++|.++++.+.+. | +.|+ +|+
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi--~gv----------------------- 76 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVL--AGA----------------------- 76 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEE--Eec-----------------------
Confidence 67888999999999999775443 589999999999998883 0 1111 111
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-cccHH
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRAD 229 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~G-~~r~d 229 (299)
.. +..+. ++.+++.-++||+.|++=.- -||+..| .+..+
T Consensus 77 -----------~~-~t~~~---i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~ 141 (289)
T cd00951 77 -----------GY-GTATA---IAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTAD 141 (289)
T ss_pred -----------CC-CHHHH---HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Confidence 00 14555 88889999999999998541 2677666 57788
Q ss_pred HHHHHHhccCCCceEE--e-cCCchhHHHHHHHhCCCcccccCC--CCchhhhhhhcccCC
Q 022296 230 IIAKVIGRLGLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDH--SQVMDLECLRGRNLG 285 (299)
Q Consensus 230 ~i~~ii~~l~~eklif--E-AP~k~qQ~~fI~~fG~~VNLgI~~--~eVi~LE~LR~~~~G 285 (299)
++.++.++.+ +|+. + ..+-.+...+++.++.+..++.-+ .|.+.++++..|--|
T Consensus 142 ~l~~L~~~~p--nivgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~l~~Ga~G 200 (289)
T cd00951 142 SLARLAERCP--NLVGFKDGVGDIELMRRIVAKLGDRLLYLGGLPTAEVFALAYLAMGVPT 200 (289)
T ss_pred HHHHHHhcCC--CEEEEEeCCCCHHHHHHHHHhcCCCeEEEeCCCcchHhHHHHHHCCCCE
Confidence 8888875344 3332 3 345566667777777766554333 577788888876544
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.5 Score=43.37 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cc---cCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCcccccccccccCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 174 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti---~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~s-evg~~~d~~~~~~~~~~ 174 (299)
.+++.++.++++||++||+.-+ +. .++++...++-+.+++.|+++.+ +.+..+.. ... +|.
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~-~~~h~~~~~nl~-----------~~d 80 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPED-ILVHAPYLINLG-----------NPN 80 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCc-eEEecceEecCC-----------CCC
Confidence 3788899999999999999754 22 45666777777788888988421 11211100 000 011
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCc--cc---HHHHHHHHhccCCCceEEecC-
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADS--LR---ADIIAKVIGRLGLEKTMFEAT- 248 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~--~r---~d~i~~ii~~l~~eklifEAP- 248 (299)
+-.. +.+++.+ .+.++..-+.||..|++-.-..+...-. .. .+.+.++++.-.-=+|.+|.-
T Consensus 81 ~~~r---------~~s~~~~---~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~ 148 (281)
T PRK01060 81 KEIL---------EKSRDFL---IQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTA 148 (281)
T ss_pred HHHH---------HHHHHHH---HHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 0000 1124455 4445555577999999865432211100 00 113333332212235788862
Q ss_pred --------CchhHHHHHHHhCCC--cccccCCCCc
Q 022296 249 --------NPRTSEWFIRRYGPK--VNLFVDHSQV 273 (299)
Q Consensus 249 --------~k~qQ~~fI~~fG~~--VNLgI~~~eV 273 (299)
...+-..+++.++.. |.+.+|..++
T Consensus 149 ~~~~~~~~~~~~~~~l~~~v~~~~~vg~~lD~gH~ 183 (281)
T PRK01060 149 GQGSELGRRFEELARIIDGVEDKSRVGVCLDTCHA 183 (281)
T ss_pred CCCCcccCCHHHHHHHHHhcCCcccEEEEEeHHhH
Confidence 234556788888753 4444655544
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.48 Score=44.58 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHhhcccccEEEeeCcc--------cccCChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDC 110 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GT--------s~l~p~~~l~eKI~l~~~~-gV~v~~--GtlfE~a~~qg~~~~~~yl~~~ 110 (299)
..-+.++.++.|.|++=+-.|| +....++.+.+.++-.++. ++++.- .. +.+...++.+.+
T Consensus 107 ~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~--------~~~~~~~~a~~l 178 (300)
T TIGR01037 107 EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP--------NVTDITEIAKAA 178 (300)
T ss_pred HHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC--------ChhhHHHHHHHH
Confidence 3344445455678888876664 4556778899999988875 665553 21 112466788889
Q ss_pred HHcCCCEEEecCCcc
Q 022296 111 KQVGFDTIELNVGSL 125 (299)
Q Consensus 111 k~lGF~~IEISdGti 125 (299)
.+.|.|.|.|++++-
T Consensus 179 ~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 179 EEAGADGLTLINTLR 193 (300)
T ss_pred HHcCCCEEEEEccCC
Confidence 999999999997653
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.55 Score=46.05 Aligned_cols=141 Identities=16% Similarity=0.219 Sum_probs=102.3
Q ss_pred ccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022296 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (299)
+|.+-+...+|-++.+ +.+.+-++.++++|..|..+ +|.+....++.+.++++.+.++|.+.|-+.|
T Consensus 85 ~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 85 VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 7778777777655321 35668888999999977654 2444455566788888889999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHH
Q 022296 123 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAE 202 (299)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 202 (299)
-.-.+.+++-.++|+.+++. +.+ .++..+. .+ .... +..+.
T Consensus 163 T~G~~~P~~v~~li~~l~~~-~~~--~l~~H~H-nd--------------------------------~GlA---~AN~l 203 (363)
T TIGR02090 163 TVGVLTPQKMEELIKKLKEN-VKL--PISVHCH-ND--------------------------------FGLA---TANSI 203 (363)
T ss_pred CCCccCHHHHHHHHHHHhcc-cCc--eEEEEec-CC--------------------------------CChH---HHHHH
Confidence 99999999999999999874 111 2444321 11 2233 55667
Q ss_pred HHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhc
Q 022296 203 RCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 203 ~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~ 237 (299)
..++|||++ |++- |+=+..||...+.+-..+..
T Consensus 204 aA~~aGa~~--vd~s~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 204 AGVKAGAEQ--VHVTVNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred HHHHCCCCE--EEEEeeccccccccccHHHHHHHHHH
Confidence 889999986 5664 88899999998877666543
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.52 Score=43.77 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~ 170 (299)
.+.+.++.+.+.|+..|-|-|+. --+|.+++.+.|+.+++.-=.. ++|-+- ..+ |. +
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~Ii---ART----Da-~--- 152 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVII---ART----DA-L--- 152 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEE---EEc----Cc-h---
Confidence 44555777777999999996655 4679999999999988841111 455551 111 10 0
Q ss_pred ccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCc
Q 022296 171 VARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 250 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k 250 (299)
+ .+. -.+++. |+++++..+||||.|++++-- ..+.+.++.+.++.--++.-.|..
T Consensus 153 -----~-------~~~--~~~~ea---i~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~Pl~~~~~~~~ 207 (243)
T cd00377 153 -----L-------AGE--EGLDEA---IERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVPLNVNMTPGG 207 (243)
T ss_pred -----h-------ccC--CCHHHH---HHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCCEEEEecCCC
Confidence 0 000 125677 999999999999999999752 458888898887765555556654
Q ss_pred h-hHHHHHHHhC
Q 022296 251 R-TSEWFIRRYG 261 (299)
Q Consensus 251 ~-qQ~~fI~~fG 261 (299)
+ ....=+.+.|
T Consensus 208 ~~~~~~~l~~lG 219 (243)
T cd00377 208 NLLTVAELAELG 219 (243)
T ss_pred CCCCHHHHHHCC
Confidence 3 2333344444
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.32 Score=46.66 Aligned_cols=112 Identities=18% Similarity=0.303 Sum_probs=74.5
Q ss_pred CChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 67 MPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 67 ~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
++.+.|++-|+.++++-=.++ | .++ +... .+++.++.+.+.|.+.|.++-|. |. ++|+++++.|.+
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pf-gvn~~---~~~~--~~~~~~~~~~~~~v~~v~~~~g~---p~----~~i~~lk~~g~~ 111 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPF-GVNIM---LLSP--FVDELVDLVIEEKVPVVTTGAGN---PG----KYIPRLKENGVK 111 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCc-EEeee---cCCC--CHHHHHHHHHhCCCCEEEEcCCC---cH----HHHHHHHHcCCE
Confidence 467789999999987521111 2 221 1123 56888999999999999998663 32 589999998876
Q ss_pred ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc---ccccC
Q 022296 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD---DVCKH 222 (299)
Q Consensus 146 v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar---gi~d~ 222 (299)
|.+.++- ++.+++..++|||.|+++++ |-.
T Consensus 112 v~~~v~s---------------------------------------------~~~a~~a~~~GaD~Ivv~g~eagGh~-- 144 (307)
T TIGR03151 112 VIPVVAS---------------------------------------------VALAKRMEKAGADAVIAEGMESGGHI-- 144 (307)
T ss_pred EEEEcCC---------------------------------------------HHHHHHHHHcCCCEEEEECcccCCCC--
Confidence 6542211 44457888999999999887 322
Q ss_pred CCcc-cHHHHHHHHhccC
Q 022296 223 ADSL-RADIIAKVIGRLG 239 (299)
Q Consensus 223 ~G~~-r~d~i~~ii~~l~ 239 (299)
|.. ..+++.++.+.++
T Consensus 145 -g~~~~~~ll~~v~~~~~ 161 (307)
T TIGR03151 145 -GELTTMALVPQVVDAVS 161 (307)
T ss_pred -CCCcHHHHHHHHHHHhC
Confidence 222 3566777766554
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.38 Score=48.86 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=110.7
Q ss_pred CCCCCCcchhHHHHHHHhh-cccccEEEeeCcccccCChhHHHHHHHHHHhCCceec--CC-cHHHHHHHhCCchHHHHH
Q 022296 32 PHYTLSSSHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TG-DWAEHLIRNGPSAFKEYV 107 (299)
Q Consensus 32 kGl~~~~g~~~l~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--~G-tlfE~a~~qg~~~~~~yl 107 (299)
+||.-. .-+..++.++.| ..-||.+-+....+-+ +++++-|+.++++|..+. .. ++-. ...++.+.++.
T Consensus 88 ~G~~~~-pddvv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~v~~ak~~G~~v~~~i~~t~~p---~~~~~~~~~~a 160 (448)
T PRK12331 88 LGYRNY-ADDVVESFVQKSVENGIDIIRIFDALNDV---RNLETAVKATKKAGGHAQVAISYTTSP---VHTIDYFVKLA 160 (448)
T ss_pred cccccC-chhhHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCeEEEEEEeecCC---CCCHHHHHHHH
Confidence 455332 223445555554 4459999998866655 369999999999996532 12 1111 13334677788
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCC
Q 022296 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNP 187 (299)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
+.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++. +. ..+++.+. .+
T Consensus 161 ~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~-~~--~pi~~H~H-nt----------------------------- 207 (448)
T PRK12331 161 KEMQEMGADSICIKDMAGILTPYVAYELVKRIKEA-VT--VPLEVHTH-AT----------------------------- 207 (448)
T ss_pred HHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEec-CC-----------------------------
Confidence 88899999999999999999999999999999984 22 12444211 11
Q ss_pred ccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 188 EIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 188 ~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
.... +..+-..++|||+.|=.=-.|+-...||.-++.+-..++..|.+
T Consensus 208 ---~GlA---~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 208 ---SGIA---EMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred ---CCcH---HHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 1223 55667889999996433334888889999988777777665543
|
|
| >PRK09856 fructoselysine 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.76 Score=41.94 Aligned_cols=146 Identities=12% Similarity=0.174 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.+++-++.++++||++||+..+.. +++.++..++-+.+++.|+++.+ ++.-...- +.. +..+.+-
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s-~~~~~~~~--~~~-------~~~~~~~ 83 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG-YTPETNGY--PYN-------MMLGDEH 83 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE-ecCcccCc--Ccc-------ccCCCHH
Confidence 689999999999999999965421 34455677788888899998754 22100000 000 0000000
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCccc------HHHHHHHHhccCCCceEEec-
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLR------ADIIAKVIGRLGLEKTMFEA- 247 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r------~d~i~~ii~~l~~eklifEA- 247 (299)
.. +..++.+ .+.++.+-..||..|++-+- +........+ -..+.+++++.|+ +|.+|.
T Consensus 84 ~r---------~~~~~~~---~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~iE~~ 150 (275)
T PRK09856 84 MR---------RESLDMI---KLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGM-DLILEPL 150 (275)
T ss_pred HH---------HHHHHHH---HHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEecC
Confidence 00 0113445 55667777889999988652 1111111111 1233444455565 577885
Q ss_pred -C-------CchhHHHHHHHhC-CCcccccCC
Q 022296 248 -T-------NPRTSEWFIRRYG-PKVNLFVDH 270 (299)
Q Consensus 248 -P-------~k~qQ~~fI~~fG-~~VNLgI~~ 270 (299)
| .+..-..+++..+ |+|-+.+|.
T Consensus 151 ~~~~~~~~~t~~~~~~l~~~~~~~~v~~~~D~ 182 (275)
T PRK09856 151 TPYESNVVCNANDVLHALALVPSPRLFSMVDI 182 (275)
T ss_pred CCCcccccCCHHHHHHHHHHcCCCcceeEEee
Confidence 2 3567888999998 566443433
|
|
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.41 Score=46.39 Aligned_cols=124 Identities=14% Similarity=0.232 Sum_probs=83.6
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (299)
.++.+=||+||..+.+.+.+++..+..+++++. ++ .|..+.-+|+. -++.++.++++|++.|.|+--|.+
T Consensus 51 ~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~--~~--~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~ 126 (374)
T PRK05799 51 KIKSIFIGGGTPTYLSLEALEILKETIKKLNKK--ED--LEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLK 126 (374)
T ss_pred ceeEEEECCCcccCCCHHHHHHHHHHHHhCCCC--CC--CEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHH
Confidence 378899999999999999999888888765542 22 13333233333 468999999999999988765552
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHH
Q 022296 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRA 201 (299)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 201 (299)
-+.++-.+.|+.+++.||.... +...++. + + .+.+.+ .+.+
T Consensus 127 ~l~R~~~~~~~~~ai~~l~~~g~~~v~-~dli~Gl----P-g-------------------------qt~e~~---~~~l 172 (374)
T PRK05799 127 YLGRIHTFEEFLENYKLARKLGFNNIN-VDLMFGL----P-N-------------------------QTLEDW---KETL 172 (374)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEE-EEeecCC----C-C-------------------------CCHHHH---HHHH
Confidence 3456677889999999885111 2222221 0 1 125666 7777
Q ss_pred HHHHHccCcEEEE
Q 022296 202 ERCLEAGADMIMI 214 (299)
Q Consensus 202 ~~dLeAGA~~VIi 214 (299)
+..++.|.+.|-+
T Consensus 173 ~~~~~l~~~~is~ 185 (374)
T PRK05799 173 EKVVELNPEHISC 185 (374)
T ss_pred HHHHhcCCCEEEE
Confidence 8888899888744
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.3 Score=41.54 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=97.4
Q ss_pred HHHHHHHhhcccccEEEeeCcccc---------cCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHS---------LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~---------l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
.+-..|+.+| ||++=+||.++. ..+.+.+++...+.+ .+.++.. | ........+.++.+.+
T Consensus 24 ~ia~~L~~~G--Vd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~--~-----~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 24 AIYRALAAAG--IDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAV--M-----VDYGNDDIDLLEPASG 93 (266)
T ss_pred HHHHHHHHCC--CCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEE--E-----ECCCCCCHHHHHHHhc
Confidence 4455677887 999999986553 234666777776653 1232221 0 1110023567888999
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchh
Q 022296 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVG 192 (299)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (299)
.|++.|-|+...-. -+.-.+.|+.+++.|++|. ++..+... .+++
T Consensus 94 ~gv~~iri~~~~~~--~~~~~~~i~~ak~~G~~v~--~~~~~a~~-------------------------------~~~~ 138 (266)
T cd07944 94 SVVDMIRVAFHKHE--FDEALPLIKAIKEKGYEVF--FNLMAISG-------------------------------YSDE 138 (266)
T ss_pred CCcCEEEEeccccc--HHHHHHHHHHHHHCCCeEE--EEEEeecC-------------------------------CCHH
Confidence 99999999875554 3445679999999998643 55532110 1256
Q ss_pred hhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 193 VGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 193 ~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+ ++.++...++||+.|. |.|..|...+..+.+++..+
T Consensus 139 ~~---~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 139 EL---LELLELVNEIKPDVFY-----IVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred HH---HHHHHHHHhCCCCEEE-----EecCCCCCCHHHHHHHHHHH
Confidence 77 8888888999999874 78899999999999888744
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.72 Score=43.65 Aligned_cols=144 Identities=15% Similarity=0.101 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
+.+.+.++++.+.|++.|=+.-. +..|+.++|.++++.+.+. ..-+.+ .+
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-------~~g~~p--------------vi------ 78 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVST-------AKGKVP--------------VY------ 78 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHH-------hCCCCc--------------EE------
Confidence 36888999999999999987433 2689999999999998883 111100 00
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-cccHHHH
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADII 231 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~G-~~r~d~i 231 (299)
+++.. +.++. ++.++..-++|||.|++=.- =||+..| ++-.+++
T Consensus 79 ------~gv~~-~t~~a---i~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~ 148 (296)
T TIGR03249 79 ------TGVGG-NTSDA---IEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTL 148 (296)
T ss_pred ------EecCc-cHHHH---HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Confidence 00000 14455 88999999999999998552 1677656 6778888
Q ss_pred HHHHhccCCCceEE---ecCCchhHHHHHHHhCCCcccccC--CCCchhhhhhhccc
Q 022296 232 AKVIGRLGLEKTMF---EATNPRTSEWFIRRYGPKVNLFVD--HSQVMDLECLRGRN 283 (299)
Q Consensus 232 ~~ii~~l~~eklif---EAP~k~qQ~~fI~~fG~~VNLgI~--~~eVi~LE~LR~~~ 283 (299)
.+++++.+ +|+. .+++..+...++++++++..+..- ..|.+.++++..|-
T Consensus 149 ~~La~~~~--nvvgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~~~~Ga 203 (296)
T TIGR03249 149 ERLADRCP--NLVGFKDGIGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPAYLPLGV 203 (296)
T ss_pred HHHHhhCC--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCC
Confidence 88876555 3332 346677777788888876655423 25777777776554
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.84 Score=43.11 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=105.3
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCch
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSA 102 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~ 102 (299)
.+.++..+++- +|.+-+...+|-.+.+ +.+.+.++.++++|..+. .|..++--. .++.
T Consensus 76 ~~dv~~A~~~g---~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~ 150 (274)
T cd07938 76 LRGAERALAAG---VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPER 150 (274)
T ss_pred HHHHHHHHHcC---cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHH
Confidence 33555556543 6777777766643222 456677999999999873 232222111 3346
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
+.++.+.+.++|.+.|-+.|-.-.+.+.+-.++|+.+++. +. ..++++.+. . |
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~i~~H~H-n------d------------------ 203 (274)
T cd07938 151 VAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER-FP-DEKLALHFH-D------T------------------ 203 (274)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH-CC-CCeEEEEEC-C------C------------------
Confidence 7788889999999999999999999999999999999985 21 123555321 1 1
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccc------cCCCcccHHHHHHHHhccC
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVC------KHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~------d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+...++|||++ +++- |+= +..||.-.+.+-..++..+
T Consensus 204 --------~GlA---~AN~laA~~aGa~~--id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~g 255 (274)
T cd07938 204 --------RGQA---LANILAALEAGVRR--FDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMG 255 (274)
T ss_pred --------CChH---HHHHHHHHHhCCCE--EEEeccccCCCCCCCCccCCcCHHHHHHHHHhcC
Confidence 2333 66678899999995 5664 553 5689999887766665544
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.6 Score=43.13 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=63.1
Q ss_pred hhHHHHHHHhhcccccEEE------------eeCcccccCChhHHHHHHHHHHhCCceecC--C-cHHHHHHHhCCchHH
Q 022296 40 HNVLEDIFESMGQFVDGLK------------FSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFK 104 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lK------------fg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--G-tlfE~a~~qg~~~~~ 104 (299)
+..+....+...+|.|++- -|.|+..+.+++.+.+.++-.++.+++|+. . +|- . ...
T Consensus 84 ~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~------~--~~~ 155 (233)
T cd02911 84 LEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD------V--DDE 155 (233)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC------c--CHH
Confidence 5555555555555556554 467888888899999999999998887774 2 331 1 456
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK 140 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~ 140 (299)
+..+.+.+.|.|+|-++.+.-.. ..+ .++|++++
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g~-~ad-~~~I~~i~ 189 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPGN-HAD-LKKIRDIS 189 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCCC-CCc-HHHHHHhc
Confidence 67788899999999998765431 222 36677765
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.32 Score=43.90 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=93.6
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
.+-..|..+| ||.+=.|+....-.+.+.+++-.+.... ..+. +|.- .+...++.-++.+++.|.+.|.+.
T Consensus 18 ~i~~~L~~~G--v~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~--~~~~----~~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 18 EIAKALDEAG--VDYIEVGFPFASEDDFEQVRRLREALPN--ARLQ--ALCR----ANEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp HHHHHHHHHT--TSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEE--EEEE----SCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHhC--CCEEEEcccccCHHHHHHhhhhhhhhcc--cccc--eeee----ehHHHHHHHHHhhHhccCCEEEec
Confidence 3445677777 8888888655555555667776666666 2221 1111 121235555677889999999998
Q ss_pred CCcccC--------C----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 122 VGSLEI--------P----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 122 dGti~i--------~----~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
...-++ + .+.-.++|+.+++.|+.| .|+..+.. ..
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~~~~-------------------------------~~ 134 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCEDAS-------------------------------RT 134 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEETTTG-------------------------------GS
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCccccc-------------------------------cc
Confidence 655441 1 234457899999999998 55552110 01
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHh
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~ 236 (299)
+++.+ .+.+++..++|++.| .|.|..|...++.+.++++
T Consensus 135 ~~~~~---~~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~lv~ 173 (237)
T PF00682_consen 135 DPEEL---LELAEALAEAGADII-----YLADTVGIMTPEDVAELVR 173 (237)
T ss_dssp SHHHH---HHHHHHHHHHT-SEE-----EEEETTS-S-HHHHHHHHH
T ss_pred cHHHH---HHHHHHHHHcCCeEE-----EeeCccCCcCHHHHHHHHH
Confidence 26777 888899999999988 4788889999888888876
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.52 Score=48.23 Aligned_cols=128 Identities=14% Similarity=0.223 Sum_probs=89.1
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHh-CCch-HHHHHHHHHHcCCCEEEecCCccc---
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GPSA-FKEYVEDCKQVGFDTIELNVGSLE--- 126 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~q-g~~~-~~~yl~~~k~lGF~~IEISdGti~--- 126 (299)
.-|+.+=||+||-.+.+.+.+.+.++.++++-..+. ..-|+.+.. .|+. -++.++.+++.|++.|.|+--|.+
T Consensus 217 ~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~--~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~v 294 (488)
T PRK08207 217 LKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK--NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDET 294 (488)
T ss_pred CceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC--CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHH
Confidence 358899999999999999999999999887521111 111333322 2322 368899999999999999877764
Q ss_pred -------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhH
Q 022296 127 -------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKS 198 (299)
Q Consensus 127 -------i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 198 (299)
-+.++-.+.++.+++.||. +...+=. +. + + .+.+.+ .
T Consensus 295 Lk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~--GL----P-g-------------------------Et~ed~---~ 339 (488)
T PRK08207 295 LKAIGRHHTVEDIIEKFHLAREMGFDNINMDLII--GL----P-G-------------------------EGLEEV---K 339 (488)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEe--CC----C-C-------------------------CCHHHH---H
Confidence 6778888999999999994 3222211 11 1 1 115566 7
Q ss_pred HHHHHHHHccCcEEEEec
Q 022296 199 RRAERCLEAGADMIMIDS 216 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEa 216 (299)
+.++..++.+.+.|-+=.
T Consensus 340 ~tl~~l~~L~pd~isv~~ 357 (488)
T PRK08207 340 HTLEEIEKLNPESLTVHT 357 (488)
T ss_pred HHHHHHHhcCcCEEEEEe
Confidence 777888889998876644
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.75 Score=48.19 Aligned_cols=156 Identities=12% Similarity=0.159 Sum_probs=105.7
Q ss_pred HHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022296 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (299)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (299)
-.+..++.|.+. ||.+-+....+-+ +++++-++.+|++|..+... .+.- +=...++.+-++.+.+.+.|.+.|-
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~~~~~~~~Gad~I~ 167 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP---RNLQAAIQAAKKHGAHAQGTISYTT-SPVHTLETYLDLAEELLEMGVDSIC 167 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCEEEEEEEecc-CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 355556655444 9998888655443 67999999999999876643 1100 1012224566777777889999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
|.|-.--+.+.+-.++|+.+++. +. -.++..+. . | .... +-
T Consensus 168 i~Dt~G~~~P~~v~~lv~~lk~~-~~--~pi~~H~H-n------t--------------------------~Gla---~A 208 (582)
T TIGR01108 168 IKDMAGILTPKAAYELVSALKKR-FG--LPVHLHSH-A------T--------------------------TGMA---EM 208 (582)
T ss_pred ECCCCCCcCHHHHHHHHHHHHHh-CC--CceEEEec-C------C--------------------------CCcH---HH
Confidence 99999999999999999999884 11 12444321 1 1 1222 55
Q ss_pred HHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCC
Q 022296 200 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
..-..++|||+.|=.=-.|+=...||...+.+-..++..+.
T Consensus 209 n~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~~g~ 249 (582)
T TIGR01108 209 ALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRGTGY 249 (582)
T ss_pred HHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHhcCC
Confidence 55789999999653333488888999888776666665553
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.25 Score=48.40 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=65.0
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHH-HHHHHHHHcCCCEEEecCCcc------
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK-EYVEDCKQVGFDTIELNVGSL------ 125 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~-~yl~~~k~lGF~~IEISdGti------ 125 (299)
-|+-+=||+||..+.|.+.|++.++.++++= .+.+ -.|+.+.-+|+.++ ++++.+++.||+.|.|---|.
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f-~~~~--~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~ 131 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLW-PVAD--DIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLR 131 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhC-CCCC--CccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 5889999999999999999999999998841 1111 13555555565554 899999999999988755544
Q ss_pred ----cCChhHHHHHHHHHHHcCC
Q 022296 126 ----EIPEETLLRYVRLVKSAGL 144 (299)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~ 144 (299)
.-+.++-.+.++.+++.+.
T Consensus 132 ~l~R~~~~~~~~~ai~~~~~~~~ 154 (380)
T PRK09057 132 FLGRLHSVAEALAAIDLAREIFP 154 (380)
T ss_pred HcCCCCCHHHHHHHHHHHHHhCc
Confidence 2245555677888888644
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.7 Score=44.60 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=107.2
Q ss_pred HHHHHHHhh-cccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 42 VLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 42 ~l~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
-.+-+++.| .+-||++-..- .+..-++++.-|+.++++|..+.. + |.-- ....+-+.++.+.+.++|.+.
T Consensus 106 vv~~fv~~a~~~Gidi~Rifd---~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp---~~t~~y~~~~a~~l~~~Gad~ 179 (468)
T PRK12581 106 IVDKFISLSAQNGIDVFRIFD---ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP---VHTLNYYLSLVKELVEMGADS 179 (468)
T ss_pred HHHHHHHHHHHCCCCEEEEcc---cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC---cCcHHHHHHHHHHHHHcCCCE
Confidence 344456665 55699988875 677888999999999999987542 1 2100 001113666677888999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhh
Q 022296 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINK 197 (299)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (299)
|=|.|-.--+.+++-.++|+.+++. +.-.++..+. .. ....
T Consensus 180 I~IkDtaG~l~P~~v~~Lv~alk~~---~~~pi~~H~H-nt--------------------------------~GlA--- 220 (468)
T PRK12581 180 ICIKDMAGILTPKAAKELVSGIKAM---TNLPLIVHTH-AT--------------------------------SGIS--- 220 (468)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHhc---cCCeEEEEeC-CC--------------------------------CccH---
Confidence 9999999999999999999999883 1233555321 11 1222
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCC
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
+...-..++|||+.|=.=-.|+-...||.-++.+-..++..+.
T Consensus 221 ~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 221 QMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKEAGY 263 (468)
T ss_pred HHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHhcCC
Confidence 5556788999999643333488888899888877777765554
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.5 Score=42.64 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=67.5
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (299)
-|+.+=||+||..+.+++.|++.++.++++ ++. + ..|+.+.-+|+. =++.++.+++.|++.|.|+--|.
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~--~--~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l 126 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLS--G--LEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELL 126 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 367788899999999999999999999986 321 0 012222223333 35889999999999999987776
Q ss_pred -----cCChhHHHHHHHHHHHcCCc
Q 022296 126 -----EIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~ 145 (299)
..+.++..+.|+.+++.|+.
T Consensus 127 ~~l~r~~~~~~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 127 KKIGRTHNEEDVYEAIANAKKAGFD 151 (377)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 35677888999999999986
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.92 Score=43.47 Aligned_cols=101 Identities=23% Similarity=0.290 Sum_probs=67.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc--------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS--------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt--------------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~ 166 (299)
..+.+.++++.+.|...|=|-|.+ --+|.+++++.|+.+++. +.-++|-+ ...+ |
T Consensus 92 ~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a--~~~~~~~I---iART----D-- 160 (285)
T TIGR02320 92 EHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA--QTTEDFMI---IARV----E-- 160 (285)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh--ccCCCeEE---EEec----c--
Confidence 366677888888999999996643 357999999999999885 11233433 1111 1
Q ss_pred ccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 167 FGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+++.. ...++. |+++++..+||||.|++++ +....+.+.++.+.++
T Consensus 161 --a~~~~---------------~~~~eA---i~Ra~ay~eAGAD~ifv~~-------~~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 161 --SLILG---------------KGMEDA---LKRAEAYAEAGADGIMIHS-------RKKDPDEILEFARRFR 206 (285)
T ss_pred --ccccc---------------CCHHHH---HHHHHHHHHcCCCEEEecC-------CCCCHHHHHHHHHHhh
Confidence 00000 125667 9999999999999999994 1234566777776664
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=1.5 Score=39.44 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHH-cCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~-~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.++++.|++.|-|.|-+......-|. ++..++++.+++ .|+.+.+++.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~------------------------------ 127 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS------------------------------ 127 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC------------------------------
Confidence 46789999999999988654443332 666789999998 5655443211
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC---CcccHHHHHHHHhccCCCceEEecCCc-hhHHHHH
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA---DSLRADIIAKVIGRLGLEKTMFEATNP-RTSEWFI 257 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~---G~~r~d~i~~ii~~l~~eklifEAP~k-~qQ~~fI 257 (299)
+ .+++++..++|+++|.+..+|..... .....+.+.++.+.++ -.++-+---+ ..+..-+
T Consensus 128 ------t---------~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia~GGI~t~~~~~~~ 191 (221)
T PRK01130 128 ------T---------LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIAEGRINTPEQAKKA 191 (221)
T ss_pred ------C---------HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEEECCCCCHHHHHHH
Confidence 0 23347788999999999877764432 2234566777766553 2244444332 3344444
Q ss_pred HHhCCC
Q 022296 258 RRYGPK 263 (299)
Q Consensus 258 ~~fG~~ 263 (299)
...|.+
T Consensus 192 l~~Gad 197 (221)
T PRK01130 192 LELGAH 197 (221)
T ss_pred HHCCCC
Confidence 456643
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.69 Score=43.05 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=49.2
Q ss_pred hHHHHHHHhhccc-ccEEEeeCcccc-------cCChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHH
Q 022296 41 NVLEDIFESMGQF-VDGLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVED 109 (299)
Q Consensus 41 ~~l~DlLe~ag~y-ID~lKfg~GTs~-------l~p~~~l~eKI~l~~~~-gV~v~~--GtlfE~a~~qg~~~~~~yl~~ 109 (299)
..+.+..+.+-++ +|++=+-++|-. +...+.+.+.++-.++. ++++.- ++.. ..+.+.+..+.
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------~~~~~~~~a~~ 184 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF------DLEDIVELAKA 184 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC------CHHHHHHHHHH
Confidence 4555555555555 777777666533 33456677777777765 443332 1111 11256778888
Q ss_pred HHHcCCCEEEecCCcc
Q 022296 110 CKQVGFDTIELNVGSL 125 (299)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (299)
|.+.|.|.|.+++++.
T Consensus 185 l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 185 AERAGADGLTAINTIS 200 (289)
T ss_pred HHHcCCCEEEEEcccC
Confidence 8999999999988764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.97 Score=47.47 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=106.4
Q ss_pred hhHHHHHHHhhcc-cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCC
Q 022296 40 HNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (299)
Q Consensus 40 ~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G---tlfE~a~~qg~~~~~~yl~~~k~lGF 115 (299)
-+-.+..++.|.+ -||.+.+....+-+ +++++-++.++++|..+... |+-- ...++.+-++.+.+.+.|.
T Consensus 95 d~vv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p---~~t~~~~~~~a~~l~~~Ga 168 (592)
T PRK09282 95 DDVVEKFVEKAAENGIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSP---VHTIEKYVELAKELEEMGC 168 (592)
T ss_pred chhhHHHHHHHHHCCCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCC---CCCHHHHHHHHHHHHHcCC
Confidence 3445666666554 59999998766655 57999999999999877521 1100 1223456667777888999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhh
Q 022296 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGI 195 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (299)
+.|=|.|-.--+.+++-.++|+.+++. +. -.++..+. .+ ....
T Consensus 169 d~I~i~Dt~G~~~P~~~~~lv~~lk~~-~~--~pi~~H~H-nt--------------------------------~Gla- 211 (592)
T PRK09282 169 DSICIKDMAGLLTPYAAYELVKALKEE-VD--LPVQLHSH-CT--------------------------------SGLA- 211 (592)
T ss_pred CEEEECCcCCCcCHHHHHHHHHHHHHh-CC--CeEEEEEc-CC--------------------------------CCcH-
Confidence 999999999999999999999999984 11 12455321 11 1222
Q ss_pred hhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 196 NKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 196 ~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+...-..++|||+. |++- |+-...||...+.+-..++..+
T Consensus 212 --~An~laAv~aGad~--vD~ai~g~g~~agn~~~e~vv~~L~~~g 253 (592)
T PRK09282 212 --PMTYLKAVEAGVDI--IDTAISPLAFGTSQPPTESMVAALKGTP 253 (592)
T ss_pred --HHHHHHHHHhCCCE--EEeeccccCCCcCCHhHHHHHHHHHhCC
Confidence 55567889999996 5554 7888888888777666665444
|
|
| >cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.23 Score=48.57 Aligned_cols=183 Identities=21% Similarity=0.278 Sum_probs=97.0
Q ss_pred hcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC--------C-cHHHHHHHhCCc----hHHHHHHHHHHcCCC
Q 022296 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------G-DWAEHLIRNGPS----AFKEYVEDCKQVGFD 116 (299)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--------G-tlfE~a~~qg~~----~~~~yl~~~k~lGF~ 116 (299)
.=+|||.+ .-|+-+++..+. ..-|+.||+|||+|.+ + .+++.++.++++ -+++.++.||.+|||
T Consensus 29 ~W~yvD~f-vywsh~~~~iPp--~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfD 105 (339)
T cd06547 29 YWQYVDTF-VYFSHSAVTIPP--ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFD 105 (339)
T ss_pred chhhhhee-ecccCccccCCC--cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCC
Confidence 33688987 445555544432 4678899999999873 2 366777765222 278999999999999
Q ss_pred EEEecCCcccCChhHHHHH---HHHHHHcCCcccceeeeecCCC-----------CCCCcccccc----cccccCCCCcc
Q 022296 117 TIELNVGSLEIPEETLLRY---VRLVKSAGLKAKPKFAVMFNKS-----------DIPSDRDRAF----GAYVARAPRST 178 (299)
Q Consensus 117 ~IEISdGti~i~~~~r~~l---I~~~~~~G~~v~~E~gvK~~~s-----------evg~~~d~~~----~~~~~~~~~~~ 178 (299)
.+=|+-=+.--+.+++.++ ++.+++..=+-.|.+-+..=.+ +... ....| ..++.-+-|..
T Consensus 106 Gw~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~-~N~~ff~~~D~~FlNY~W~~ 184 (339)
T cd06547 106 GWLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNS-KNKPFFDVCDGIFLNYWWTE 184 (339)
T ss_pred ceEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhH-HHHHHHhhhcceeEecCCCc
Confidence 9888776654244444444 4444443111111221110000 0000 00000 12344566643
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
... +-+++.. .++.+-..++=||.|.. +||.+ ..|++.++..-..+.+.++.-=|| ||
T Consensus 185 ~~l------~~s~~~a-~~~g~~~~dvy~GiDv~---grg~~-~~~~~~~~~~~~~~~~~~~Svalf-ap 242 (339)
T cd06547 185 ESL------ERSVQLA-EGLGRSPYDVYVGVDVW---GRGTK-GGGGWNSDKALDEIKKAGLSVALF-AP 242 (339)
T ss_pred chH------HHHHHHH-HHcCCCHhHEEEEEEEE---cCCcc-cCCCCchhhhhhhhcccCeEEEEE-cC
Confidence 311 0111111 11222245666777644 78755 356666565555666677766777 66
|
The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.7 Score=40.59 Aligned_cols=146 Identities=15% Similarity=0.181 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.++++++++-+.|.+.+=+... +..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv------------------------- 77 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGV------------------------- 77 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEE-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecC-------------------------
Confidence 6888999999999999988654 4689999999999998883 1111111122
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CcccH
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRA 228 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~----G~~r~ 228 (299)
...+.++. |+.++..-++|||.|++=.- -||+.- -++..
T Consensus 78 ---------~~~st~~~---i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~ 145 (289)
T PF00701_consen 78 ---------GANSTEEA---IELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSP 145 (289)
T ss_dssp ---------ESSSHHHH---HHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHH
T ss_pred ---------cchhHHHH---HHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCH
Confidence 01225666 88889999999999998752 256653 46778
Q ss_pred HHHHHHHhccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022296 229 DIIAKVIGRLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 286 (299)
Q Consensus 229 d~i~~ii~~l~-~eklifEAP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G~ 286 (299)
+.+.++.+ ++ +-=+=....+..+...++++.++++.+... +|-.-+.+|..|.-|-
T Consensus 146 ~~l~~L~~-~~nv~giK~s~~~~~~~~~~~~~~~~~~~v~~G-~d~~~~~~l~~G~~G~ 202 (289)
T PF00701_consen 146 ETLARLAK-IPNVVGIKDSSGDLERLIQLLRAVGPDFSVFCG-DDELLLPALAAGADGF 202 (289)
T ss_dssp HHHHHHHT-STTEEEEEESSSBHHHHHHHHHHSSTTSEEEES-SGGGHHHHHHTTSSEE
T ss_pred HHHHHHhc-CCcEEEEEcCchhHHHHHHHhhhcccCeeeecc-ccccccccccccCCEE
Confidence 88888877 54 222223344555667778888888887666 4444578888776553
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.77 Score=44.00 Aligned_cols=98 Identities=16% Similarity=0.272 Sum_probs=69.7
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcccccCChhHHHHHHHHHHhCC-c---eecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-V---YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V---~v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
...++..+++.+.+ -+..+.|.+|.-.+.+ .+.+.++.+++++ + .+.| |+++ .++.+.+++
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~tGGEPllr~--dl~~li~~i~~~~~l~~i~itTNG~ll-----------~~~~~~L~~ 112 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRLTGGEPLVRR--GCDQLVARLGKLPGLEELSLTTNGSRL-----------ARFAAELAD 112 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECcCCCccc--cHHHHHHHHHhCCCCceEEEEeChhHH-----------HHHHHHHHH
Confidence 45577777765443 3788999999988876 5888999888875 2 2344 4443 346677889
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccce
Q 022296 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPK 149 (299)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E 149 (299)
.|++.|-||=.+++ -+.+.-.+.|+.+++.|+ .++-.
T Consensus 113 aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in 160 (329)
T PRK13361 113 AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLN 160 (329)
T ss_pred cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEE
Confidence 99999999987763 234567788888999888 44433
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=93.77 E-value=1 Score=42.14 Aligned_cols=101 Identities=22% Similarity=0.371 Sum_probs=73.3
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHHc
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~--v~~-GtlfE~a~~qg~~~~~~yl~~~k~l 113 (299)
....+..+++.+.++ +..+.|.+|--.+.+ .+.+.++.++++|+ . +.| |+++ +++++.+++.
T Consensus 41 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~--~l~~iv~~l~~~g~~~v~i~TNG~ll-----------~~~~~~l~~~ 107 (302)
T TIGR02668 41 SPEEIERIVRVASEFGVRKVKITGGEPLLRK--DLIEIIRRIKDYGIKDVSMTTNGILL-----------EKLAKKLKEA 107 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccccccc--CHHHHHHHHHhCCCceEEEEcCchHH-----------HHHHHHHHHC
Confidence 566788888766554 788999999988766 47789999999976 3 344 5543 3456678889
Q ss_pred CCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeee
Q 022296 114 GFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAV 152 (299)
Q Consensus 114 GF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~gv 152 (299)
|++.|-||=.+.+ -+.+...+.|+.+++.|+. ++-.+.+
T Consensus 108 g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~ 157 (302)
T TIGR02668 108 GLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVV 157 (302)
T ss_pred CCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9999999876652 2456677889999999886 4443333
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.96 Score=46.74 Aligned_cols=171 Identities=13% Similarity=0.088 Sum_probs=113.9
Q ss_pred CCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChh-----------HHHHHHHHHHhCCceecC
Q 022296 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVST 88 (299)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~ 88 (299)
+++-.++++.+.+++... -...++.+++ .-+|.+-+...||-++-+. .+++-++.++++|..|..
T Consensus 69 ~~~i~~~~~~~~~~i~~~-~d~~~e~~~~---~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~ 144 (524)
T PRK12344 69 HAKLAAFGSTRRAGVSAE-EDPNLQALLD---AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIF 144 (524)
T ss_pred CcEEEEEeeccccCCCcc-cHHHHHHHHh---CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 355556665556665321 1123333333 3467788887777654333 345788999999999887
Q ss_pred Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 022296 89 GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (299)
Q Consensus 89 Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~ 167 (299)
+. ++.-+.+..++.+-++++.+.+.|.+.|-+.|-.--+.+.+-.++|+.++++= ...+++.+. . |
T Consensus 145 ~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~---~v~i~~H~H-N------D--- 211 (524)
T PRK12344 145 DAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP---GVPLGIHAH-N------D--- 211 (524)
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc---CCeEEEEEC-C------C---
Confidence 63 33223344555677788888999999999999999999999999999998851 223444321 1 1
Q ss_pred cccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHH
Q 022296 168 GAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 235 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii 235 (299)
.... +-.+...++|||+. ||+- |+=+..||...+.+-..+
T Consensus 212 -----------------------~GlA---~ANslaAi~aGa~~--Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 212 -----------------------SGCA---VANSLAAVEAGARQ--VQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred -----------------------CChH---HHHHHHHHHhCCCE--EEEecccccccccCcCHHHHHHHH
Confidence 2233 55667889999996 6775 888888998877665333
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.5 Score=41.15 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=85.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
++.+...|-|+|=+.... ++.++..++++.+++.|+.+.-|+.-
T Consensus 126 i~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~---------------------------------- 169 (260)
T PRK00278 126 IYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHD---------------------------------- 169 (260)
T ss_pred HHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 788999999999998877 46789999999999988887766544
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCCc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPKV 264 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e-klifEAP~-k~qQ~~fI~~fG~~V 264 (299)
.+++++.+++||++|-+-.|.+-. -....+...+++..++-+ .+|-|+=- ...+...+...|.+.
T Consensus 170 -----------~~E~~~A~~~gadiIgin~rdl~~--~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~ 236 (260)
T PRK00278 170 -----------EEELERALKLGAPLIGINNRNLKT--FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADA 236 (260)
T ss_pred -----------HHHHHHHHHcCCCEEEECCCCccc--ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCE
Confidence 223366789999999998775422 234477788888877644 67889875 477788888889887
Q ss_pred cc
Q 022296 265 NL 266 (299)
Q Consensus 265 NL 266 (299)
=|
T Consensus 237 vl 238 (260)
T PRK00278 237 VL 238 (260)
T ss_pred EE
Confidence 66
|
|
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.73 Score=45.60 Aligned_cols=88 Identities=18% Similarity=0.397 Sum_probs=66.8
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (299)
..|+-+=||+||-.+.+.+.|++.++.++++. .+.+. .|+.+.-+|+.+ +++++.++++|++.|.|.--|.+
T Consensus 61 ~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L 137 (390)
T PRK06582 61 KYIKSIFFGGGTPSLMNPVIVEGIINKISNLA-IIDNQ--TEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDL 137 (390)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHH
Confidence 46999999999999999999999999999863 11111 245555577666 79999999999999988766652
Q ss_pred ------CChhHHHHHHHHHHHc
Q 022296 127 ------IPEETLLRYVRLVKSA 142 (299)
Q Consensus 127 ------i~~~~r~~lI~~~~~~ 142 (299)
-+.++-.+.++.+++.
T Consensus 138 ~~lgR~h~~~~~~~ai~~~~~~ 159 (390)
T PRK06582 138 KKLGRTHDCMQAIKTIEAANTI 159 (390)
T ss_pred HHcCCCCCHHHHHHHHHHHHHh
Confidence 2455666778888775
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.1 Score=41.81 Aligned_cols=141 Identities=15% Similarity=0.208 Sum_probs=93.2
Q ss_pred HHHHHHHhhcccccEEEeeC-----------cccccCChhHHHHHHHHHHhCCce--ecCCcHHHHHHHhCCchHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSG-----------GSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~-----------GTs~l~p~~~l~eKI~l~~~~gV~--v~~GtlfE~a~~qg~~~~~~yl~ 108 (299)
.+-..|+.+| ||.+=+|. |.....+.+.+++-.+..+..-+- .-|| .+ .. +-++
T Consensus 28 ~ia~~Ld~aG--V~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg--------~~--~~-~dl~ 94 (333)
T TIGR03217 28 AIAAALDEAG--VDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG--------IG--TV-HDLK 94 (333)
T ss_pred HHHHHHHHcC--CCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC--------cc--CH-HHHH
Confidence 4445566677 77777762 344445556666666554432221 1133 11 23 4478
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+.+.|.+.|-|....-+.+ .-.+.|+.+++.|+.|. +...... .
T Consensus 95 ~a~~~gvd~iri~~~~~e~d--~~~~~i~~ak~~G~~v~--~~l~~s~-------------------------------~ 139 (333)
T TIGR03217 95 AAYDAGARTVRVATHCTEAD--VSEQHIGMARELGMDTV--GFLMMSH-------------------------------M 139 (333)
T ss_pred HHHHCCCCEEEEEeccchHH--HHHHHHHHHHHcCCeEE--EEEEccc-------------------------------C
Confidence 99999999999987655543 34689999999998754 2332100 0
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ +++++...++||+.| .|.|..|...++.+.+++..+
T Consensus 140 ~~~e~l---~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 140 TPPEKL---AEQAKLMESYGADCV-----YIVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred CCHHHH---HHHHHHHHhcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 226788 999999999999976 478899999999888888644
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=93.50 E-value=2.9 Score=35.09 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=64.0
Q ss_pred ccEEEeeCcccccCChhHHHHHHHHHHhCC-----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---
Q 022296 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--- 125 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-----V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--- 125 (299)
++.+-|++|+..+.+.+.+.+.++.++++. ..+...| .+...-++.++.+++.|++.|-+|=-+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-------n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIET-------RPGTLTEELLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-------CcccCCHHHHHHHHHcCCCeEEEecccCCHH
Confidence 588999999999999877888888888874 2222221 1111236789999999999998876653
Q ss_pred -------cCChhHHHHHHHHHHHcC-Ccccc
Q 022296 126 -------EIPEETLLRYVRLVKSAG-LKAKP 148 (299)
Q Consensus 126 -------~i~~~~r~~lI~~~~~~G-~~v~~ 148 (299)
.-+.+...+.|+.+++.| +.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~ 155 (216)
T smart00729 125 VLKAINRGHTVEDVLEAVEKLREAGPIKVST 155 (216)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCcceEE
Confidence 345688889999999999 44433
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.9 Score=38.85 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTD 179 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISd-Gti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~ 179 (299)
..+++.++.|+++||+.||++. +....+.++..++.+.+++.|+++..--...+.. . .|..-..+
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~--~------------~~~~~~~~ 80 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNL--L------------SPDEEERE 80 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCc--C------------CCchhhHH
Confidence 4789999999999999999998 4444444447888889999888865533332110 0 01000000
Q ss_pred hhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccC------CCcc--cHHHH---HHHHhccCCCceEEec-
Q 022296 180 KLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH------ADSL--RADII---AKVIGRLGLEKTMFEA- 247 (299)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~------~G~~--r~d~i---~~ii~~l~~eklifEA- 247 (299)
-.++.+ .+.++-.-+.||.+|++..-..... ...+ -.+.+ ..+++.. -=++-+|.
T Consensus 81 ---------~~~~~~---~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-~i~l~~e~~ 147 (274)
T COG1082 81 ---------EALEEL---KRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL-GIGLALENH 147 (274)
T ss_pred ---------HHHHHH---HHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh-CCceEEeec
Confidence 013334 3455557778999888776321111 1111 12222 2333334 33455664
Q ss_pred --C-----CchhHHHHHHHhCCCcccc--cCCCCch
Q 022296 248 --T-----NPRTSEWFIRRYGPKVNLF--VDHSQVM 274 (299)
Q Consensus 248 --P-----~k~qQ~~fI~~fG~~VNLg--I~~~eVi 274 (299)
| +..|...++...+.. |+| +|+.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~lD~~H~~ 182 (274)
T COG1082 148 HHPGNVVETGADALDLLREVDSP-NVGLLLDTGHAF 182 (274)
T ss_pred CCccceeecCHHHHHHHHhcCCC-ceEEEEecCchh
Confidence 3 335567888888876 665 6655543
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=1.6 Score=41.24 Aligned_cols=144 Identities=12% Similarity=0.045 Sum_probs=92.8
Q ss_pred chHHHHHHHHHH-cCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQ-VGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~-lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+.++++++++.+ .|.+.|=+.-.+ ..|+.++|+++++.+.+. ..-+.+.
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~-------~~~~~~v-------------------- 76 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE-------AKGKVKL-------------------- 76 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH-------hCCCCCE--------------------
Confidence 368899999999 999999886653 579999999999998883 2211000
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCchh---H
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRT---S 253 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~q---Q 253 (299)
.+++...+.++. |+.++..-++||+.|++=.--.+...-+---+-..+|++..++.=+++-.|.... -
T Consensus 77 ------iagvg~~~t~~a---i~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~ 147 (293)
T PRK04147 77 ------IAQVGSVNTAEA---QELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLS 147 (293)
T ss_pred ------EecCCCCCHHHH---HHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCC
Confidence 001111225666 9999999999999999987644443211123334566777777778888875322 3
Q ss_pred HHHHHHhCCCccc-c--cCCCCchhhhhhh
Q 022296 254 EWFIRRYGPKVNL-F--VDHSQVMDLECLR 280 (299)
Q Consensus 254 ~~fI~~fG~~VNL-g--I~~~eVi~LE~LR 280 (299)
..++.++-..=|+ | -...++..+..++
T Consensus 148 ~~~l~~L~~~pnvvgiK~s~~d~~~~~~~~ 177 (293)
T PRK04147 148 LDQFNELFTLPKVIGVKQTAGDLYQLERIR 177 (293)
T ss_pred HHHHHHHhcCCCEEEEEeCCCCHHHHHHHH
Confidence 4555555433344 3 4455666666555
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.9 Score=42.30 Aligned_cols=144 Identities=20% Similarity=0.268 Sum_probs=94.0
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (299)
-.+-+.|+.+| ||.+=+||= ..+++ -.+.++...+.+.....-+|. + ...+-++.+.+.|++.|.|
T Consensus 25 ~~ia~~L~~~G--v~~IEvG~p---~~~~~-~~e~i~~i~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i 90 (363)
T TIGR02090 25 VEIARKLDELG--VDVIEAGFP---IASEG-EFEAIKKISQEGLNAEICSLA-----R---ALKKDIDKAIDCGVDSIHT 90 (363)
T ss_pred HHHHHHHHHcC--CCEEEEeCC---CCChH-HHHHHHHHHhcCCCcEEEEEc-----c---cCHHHHHHHHHcCcCEEEE
Confidence 35566778888 888888863 33333 245555555544322222333 1 1244578889999999999
Q ss_pred cCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 121 NVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 121 SdGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
+..+-++ +. +.-.+.|+.+++.|++| +|+..+. + .
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v--~~~~eda----~---------------------------r 137 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIV--EFSAEDA----T---------------------------R 137 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE--EEEEeec----C---------------------------C
Confidence 7765333 33 44457889999999875 4555211 0 0
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.+++.+ ++.++...++||+.|. |+|..|...++.+.++++.+-
T Consensus 138 ~~~~~l---~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 138 TDIDFL---IKVFKRAEEAGADRIN-----IADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred CCHHHH---HHHHHHHHhCCCCEEE-----EeCCCCccCHHHHHHHHHHHh
Confidence 126777 8888888999998764 688889888888888887653
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.3 Score=41.76 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=47.9
Q ss_pred hHHHHHHHhhccc--ccEEEeeC--------cccccCChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHH
Q 022296 41 NVLEDIFESMGQF--VDGLKFSG--------GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 41 ~~l~DlLe~ag~y--ID~lKfg~--------GTs~l~p~~~l~eKI~l~~~~-gV~v~~-GtlfE~a~~qg~~~~~~yl~ 108 (299)
..+.+..+.+-++ .|++=+-. |.......+.+.+.++-.+++ ++++.- -+. +.+.+.++.+
T Consensus 104 ~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-------~~~~~~~~a~ 176 (301)
T PRK07259 104 EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-------NVTDIVEIAK 176 (301)
T ss_pred HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-------CchhHHHHHH
Confidence 3444444444455 67765511 555666677888888888876 555543 111 1124566777
Q ss_pred HHHHcCCCEEEecCCcc
Q 022296 109 DCKQVGFDTIELNVGSL 125 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti 125 (299)
.+.+.|.|.|.+++.+.
T Consensus 177 ~l~~~G~d~i~~~nt~~ 193 (301)
T PRK07259 177 AAEEAGADGLSLINTLK 193 (301)
T ss_pred HHHHcCCCEEEEEcccc
Confidence 88888999998876554
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.6 Score=46.03 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=121.6
Q ss_pred CCCceeEe----cCCCCCCcchhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCceec-----CCcHH
Q 022296 23 RFGVTEMR----SPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWA 92 (299)
Q Consensus 23 ~~GlT~V~----DkGl~~~~g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~-----~Gtlf 92 (299)
++-+-|.+ -+||... .-+-.+-.++.|.++ ||++-..- +|-.-++++.-|+.++++|..+. ++.-
T Consensus 75 nt~lqmL~Rg~N~vGy~~~-~d~vv~~~v~~a~~~Gidv~Rifd---~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp- 149 (596)
T PRK14042 75 NTQLSMLLRGQNLLGYRNY-ADDVVRAFVKLAVNNGVDVFRVFD---ALNDARNLKVAIDAIKSHKKHAQGAICYTTSP- 149 (596)
T ss_pred CCceEEEeccccccccccC-ChHHHHHHHHHHHHcCCCEEEEcc---cCcchHHHHHHHHHHHHcCCEEEEEEEecCCC-
Confidence 45677777 7788666 556677788875555 99988875 67777889999999999998543 3421
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022296 93 EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (299)
Q Consensus 93 E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~ 172 (299)
...++.+.++.+.+.++|.+.|=|.|-.--+.+.+-.++|+.+++. +. -.++..+. + +
T Consensus 150 ----~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~-~~--ipi~~H~H--n-----t-------- 207 (596)
T PRK14042 150 ----VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA-TG--LPVHLHSH--S-----T-------- 207 (596)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh-cC--CEEEEEeC--C-----C--------
Confidence 2233456667777788999999999999999999999999999984 21 22454321 1 0
Q ss_pred CCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 173 RAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
.... +...-..++|||+.|=.=-.|+-...||.-++.+-..++..+.+
T Consensus 208 ------------------~Gla---~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 208 ------------------SGLA---SICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred ------------------CCcH---HHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCC
Confidence 1222 44557789999996433335888888999888877777666643
|
|
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=93.21 E-value=2.2 Score=40.99 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=65.8
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCc--eecC-CcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (299)
.+....+.++..|. -.+-|.+|=-.+.| .+.+.++.+++.|+ .+.| |++++- . ++..++.|.
T Consensus 60 s~ee~~~~i~e~g~--~~V~i~GGEPLL~p--dl~eiv~~~~~~g~~v~l~TNG~ll~~-------~----~~~l~~~~~ 124 (318)
T TIGR03470 60 SVEECLRAVDECGA--PVVSIPGGEPLLHP--EIDEIVRGLVARKKFVYLCTNALLLEK-------K----LDKFEPSPY 124 (318)
T ss_pred CHHHHHHHHHHcCC--CEEEEeCccccccc--cHHHHHHHHHHcCCeEEEecCceehHH-------H----HHHHHhCCC
Confidence 34355555555553 35778889888887 58999999999986 4556 766542 2 233466788
Q ss_pred CEEEec-CCcccCC---------hhHHHHHHHHHHHcCCcccceeee
Q 022296 116 DTIELN-VGSLEIP---------EETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 116 ~~IEIS-dGti~i~---------~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
..|-|| ||.-+.- .+.-.+.|+.++++|+.|...+.+
T Consensus 125 ~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv 171 (318)
T TIGR03470 125 LTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTL 171 (318)
T ss_pred cEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 889998 6643221 233457899999999876555444
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=93.21 E-value=1 Score=46.26 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=96.3
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
.+-..|..+| ||.+=+||..+.=.+.+.+++..+.. .+..++. |. +-.+..++.-++..++.|.+.|-+.
T Consensus 30 ~ia~~L~~~G--v~~IE~G~p~~s~~d~~~v~~i~~~~--~~~~i~a--~~----r~~~~did~a~~a~~~~~~~~v~i~ 99 (513)
T PRK00915 30 QIAKQLERLG--VDVIEAGFPASSPGDFEAVKRIARTV--KNSTVCG--LA----RAVKKDIDAAAEALKPAEAPRIHTF 99 (513)
T ss_pred HHHHHHHHcC--CCEEEEcCCCCChHHHHHHHHHHhhC--CCCEEEE--Ec----cCCHHHHHHHHHHhhcCCCCEEEEE
Confidence 5566788888 99999999654333444454443322 2344432 11 1112257777777778999999998
Q ss_pred CCcccCChh--------H----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 122 VGSLEIPEE--------T----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 122 dGti~i~~~--------~----r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
..+-++-.+ + -.+.|+.+++.|++| +|+-.+.. ..
T Consensus 100 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~f~~ed~~-------------------------------r~ 146 (513)
T PRK00915 100 IATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDV--EFSAEDAT-------------------------------RT 146 (513)
T ss_pred ECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeCCCC-------------------------------CC
Confidence 877544322 2 247899999999886 45552110 01
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+++.+ ++.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 147 d~~~l---~~~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 187 (513)
T PRK00915 147 DLDFL---CRVVEAAIDAGATTI-----NIPDTVGYTTPEEFGELIKTL 187 (513)
T ss_pred CHHHH---HHHHHHHHHcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 26777 888899999999865 478999999998888887654
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=4.4 Score=42.70 Aligned_cols=151 Identities=11% Similarity=0.129 Sum_probs=106.2
Q ss_pred HHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCcee-----cCCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022296 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (299)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v-----~~GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (299)
..+..++.|.+. ||.+-+.-. +-+-+.++.-|+.++++|..+ |+++- ++ .++.+.++.+.+.+.|.
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~---lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p-~~----~~~~~~~~a~~l~~~Ga 169 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDA---MNDPRNLETALKAVRKVGAHAQGTLSYTTSP-VH----TLQTWVDLAKQLEDMGV 169 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeee---CCcHHHHHHHHHHHHHcCCeEEEEEEEeeCC-cc----CHHHHHHHHHHHHHcCC
Confidence 456667776554 999988854 444467999999999999853 23321 11 23467778888889999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhh
Q 022296 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGI 195 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (299)
+.|=|.|-.--+.+.+-.++|+.+++. +. -.+++.+. .+ ....
T Consensus 170 d~i~i~Dt~G~l~P~~~~~lv~~lk~~-~~--~pi~~H~H-nt--------------------------------~GlA- 212 (593)
T PRK14040 170 DSLCIKDMAGLLKPYAAYELVSRIKKR-VD--VPLHLHCH-AT--------------------------------TGLS- 212 (593)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEEC-CC--------------------------------CchH-
Confidence 999999999999999999999999984 11 23555321 11 1223
Q ss_pred hhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 196 NKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 196 ~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+...-..++|||+.|=.=-.|+=...||...+.+-..+...+
T Consensus 213 --~An~laAieAGa~~vD~ai~glG~~~Gn~~le~vv~~L~~~~ 254 (593)
T PRK14040 213 --TATLLKAIEAGIDGVDTAISSMSMTYGHSATETLVATLEGTE 254 (593)
T ss_pred --HHHHHHHHHcCCCEEEeccccccccccchhHHHHHHHHHhcC
Confidence 555678999999965333348888889988887766666544
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.45 Score=45.24 Aligned_cols=86 Identities=17% Similarity=0.221 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
..-.+..++.|.++|-|-|| ++..+.|+.+.++|.-|.-.+|..-. +. ..++.|....
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------~~~~~~I~al~~agIpV~gHiGL~pq-~~------~~~gg~~i~g--------- 154 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------EEVAETIKRLVERGIPVMGHLGLTPQ-SV------NVLGGYKVQG--------- 154 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHCCCCEeeeecccce-ee------cccCCeeeec---------
Confidence 33466778899999999998 46778999999999999888888321 11 1111111110
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
..+-+.+++ |+++++..+|||+.|.+|+
T Consensus 155 --rt~~~a~~~---i~ra~a~~eAGA~~i~lE~ 182 (264)
T PRK00311 155 --RDEEAAEKL---LEDAKALEEAGAFALVLEC 182 (264)
T ss_pred --CCHHHHHHH---HHHHHHHHHCCCCEEEEcC
Confidence 011124667 9999999999999999998
|
|
| >TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.7 Score=39.34 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+++.++.++++||+.||+..-. ..+..++-+.+++.|+++..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEEE
Confidence 79999999999999999996521 23566777788899999754
|
This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA. |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.7 Score=44.60 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=102.0
Q ss_pred hcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022296 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (299)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G---tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (299)
+..-||.+-+....+- .+++++-|+.++++|..+... |+- - ...++.+-++.+.+.+.|.+.|=|.|-.--
T Consensus 105 ~~~Gvd~irif~~lnd---~~n~~~~i~~ak~~G~~v~~~i~~t~~-p--~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~ 178 (467)
T PRK14041 105 AEYGLDIIRIFDALND---IRNLEKSIEVAKKHGAHVQGAISYTVS-P--VHTLEYYLEFARELVDMGVDSICIKDMAGL 178 (467)
T ss_pred HHCCcCEEEEEEeCCH---HHHHHHHHHHHHHCCCEEEEEEEeccC-C--CCCHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 4445999998876665 467999999999999977621 110 0 112245667777788899999999999999
Q ss_pred CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHH
Q 022296 127 IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLE 206 (299)
Q Consensus 127 i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe 206 (299)
+.+.+-.++|+.+++. +.+ .++..+. . + .... +-..-..++
T Consensus 179 l~P~~v~~Lv~~lk~~-~~v--pI~~H~H-n------t--------------------------~GlA---~AN~laAie 219 (467)
T PRK14041 179 LTPKRAYELVKALKKK-FGV--PVEVHSH-C------T--------------------------TGLA---SLAYLAAVE 219 (467)
T ss_pred cCHHHHHHHHHHHHHh-cCC--ceEEEec-C------C--------------------------CCcH---HHHHHHHHH
Confidence 9999999999999984 211 2444211 1 1 1222 555678899
Q ss_pred ccCcEEEEeccccccCCCcccHHHHHHHHhccCC
Q 022296 207 AGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 207 AGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
|||+.|=.=-.|+-...||..++.+-..++..+.
T Consensus 220 aGad~vD~sv~~~g~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 220 AGADMFDTAISPFSMGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred hCCCEEEeeccccCCCCCChhHHHHHHHHHhcCC
Confidence 9999643333488888899888877777766553
|
|
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=92.98 E-value=3.6 Score=39.19 Aligned_cols=99 Identities=21% Similarity=0.305 Sum_probs=71.7
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHh-CCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~-~gV-~--v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
...++.++++.+.++ |.-+.|.+|-..+.+ .+.+.++.+++ .|+ . +.| |.++ +++++..++
T Consensus 44 s~eei~~~i~~~~~~gv~~V~ltGGEPll~~--~l~~li~~i~~~~gi~~v~itTNG~ll-----------~~~~~~L~~ 110 (334)
T TIGR02666 44 TFEEIERLVRAFVGLGVRKVRLTGGEPLLRK--DLVELVARLAALPGIEDIALTTNGLLL-----------ARHAKDLKE 110 (334)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECccccccC--CHHHHHHHHHhcCCCCeEEEEeCchhH-----------HHHHHHHHH
Confidence 566777777765544 888999999988876 58888888777 455 3 344 5443 346778899
Q ss_pred cCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCc-cccee
Q 022296 113 VGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLK-AKPKF 150 (299)
Q Consensus 113 lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~-v~~E~ 150 (299)
.|++.|-||=.+.+ -+.+...+.|+.+++.|+. ++-.+
T Consensus 111 ~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~ 160 (334)
T TIGR02666 111 AGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNT 160 (334)
T ss_pred cCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999965542 2457778899999999986 55443
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.51 Score=44.56 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
..-.+..++.|.++|-|-|| ++..+.|+.+.++|..|..++|.. +.+ +..++.+....
T Consensus 94 ~~a~r~~~~aGa~aVkiEd~------~~~~~~I~al~~agipV~gHiGL~-pq~------~~~~gg~~~~g--------- 151 (254)
T cd06557 94 RNAARLMKEAGADAVKLEGG------AEVAETIRALVDAGIPVMGHIGLT-PQS------VNQLGGYKVQG--------- 151 (254)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHcCCCeecccccc-cee------eeccCCceecc---------
Confidence 33466778899999999998 477899999999999999888884 211 11111110000
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
-.+-..+++ |+++++..+|||+.|.+|+
T Consensus 152 --rt~~~a~~~---i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 152 --KTEEEAERL---LEDALALEEAGAFALVLEC 179 (254)
T ss_pred --CCHHHHHHH---HHHHHHHHHCCCCEEEEcC
Confidence 011124667 9999999999999999997
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=92.95 E-value=2.9 Score=40.10 Aligned_cols=97 Identities=26% Similarity=0.369 Sum_probs=68.2
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (299)
....+.++++.+.+. +..+-|++|--.+.| .+.+.++.++++|+.+ .| |+++ -++.++.+++.|
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~--~~~~ii~~~~~~g~~~~l~TNG~ll----------~~e~~~~L~~~g 105 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLHFSGGEPLARP--DLVELVAHARRLGLYTNLITSGVGL----------TEARLDALADAG 105 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCccccccc--cHHHHHHHHHHcCCeEEEEeCCccC----------CHHHHHHHHhCC
Confidence 455777777665443 567889999998877 5889999999999854 34 6543 145677888899
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCccc
Q 022296 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~ 147 (299)
++.|.||=...+ . +.+.-.+.|+.+++.|+.+.
T Consensus 106 ~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~ 149 (358)
T TIGR02109 106 LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLT 149 (358)
T ss_pred CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceE
Confidence 999999965542 1 12333567788888887643
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.8 Score=48.11 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.++.+++.+.+.|.+.|-|.|..-++ +.-...|+.+++.|+.+..-+.... + +..
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd~--~~~~~ai~~ak~~G~~~~~~i~yt~--~---p~~------------------ 152 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMNDP--RNLETALKAVRKVGAHAQGTLSYTT--S---PVH------------------ 152 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCcH--HHHHHHHHHHHHcCCeEEEEEEEee--C---Ccc------------------
Confidence 68899999999999999999977776 3455789999999997654443311 1 111
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+++.+ ++.++.-.++||+.|- |+|..|-.....+.++++.+
T Consensus 153 --------~~~~~---~~~a~~l~~~Gad~i~-----i~Dt~G~l~P~~~~~lv~~l 193 (593)
T PRK14040 153 --------TLQTW---VDLAKQLEDMGVDSLC-----IKDMAGLLKPYAAYELVSRI 193 (593)
T ss_pred --------CHHHH---HHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 15666 7778888899999764 78899999998888888755
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.8 Score=41.05 Aligned_cols=108 Identities=17% Similarity=0.097 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
.++++++++-+-|.+.|=+.-.| ..|+.++|+++++.+.+. | ..|. +|+
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi--~gv----------------------- 76 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFA--PGT----------------------- 76 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEE--EEC-----------------------
Confidence 67888999999999999876554 489999999999988772 1 1111 122
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc-CCCceEEecC
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 248 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l-~~eklifEAP 248 (299)
...+..+. |+.++..-++|||.|++-.--.+..+-+---+-...|++.. ++.=+++-.|
T Consensus 77 -----------~~~~t~~a---i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P 136 (294)
T TIGR02313 77 -----------GALNHDET---LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIP 136 (294)
T ss_pred -----------CcchHHHH---HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 01124555 88999999999999999885322221111112223344445 4555555555
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=92.76 E-value=1.2 Score=43.07 Aligned_cols=110 Identities=13% Similarity=0.204 Sum_probs=77.9
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHH--HhCCchHHHHHHHHHHc
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI--RNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~--~qg~~~~~~yl~~~k~l 113 (299)
.+.++.+.++.+-+ .+.-+-|.+|.....+.+.+.+.++..+++ ++.++.-|-.|+.+ ....-..++.++..|+.
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeA 150 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEA 150 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45555555554444 477788888877777888899999999998 46655445556532 22213468999999999
Q ss_pred CCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 022296 114 GFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 114 GF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
|++.+- .+.-+. .++.++|.+.|+.+++.|+++-+
T Consensus 151 Gl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s 197 (343)
T TIGR03551 151 GLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA 197 (343)
T ss_pred CcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc
Confidence 999884 222222 26888999999999999998866
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.76 Score=46.22 Aligned_cols=124 Identities=11% Similarity=0.130 Sum_probs=83.0
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (299)
-|+-+=||+||..+.+.+.|++.++.++++ ++. + -.|+.+.-+|+. =++.++.+++.||+.|.|---|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~--~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLA--P--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 488999999999999999999999999885 221 1 123333333333 36889999999999998765554
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
.-+.++-.+.|+.+++.||.... +..-++. |. .+.+.+ .+.
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~~v~-~DlI~Gl----------------Pg--------------qT~e~~---~~~ 235 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRAAVV-CDLIFGL----------------PG--------------QTPEIW---QQD 235 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCcEE-EEEEeeC----------------CC--------------CCHHHH---HHH
Confidence 23455666778888888865221 2222221 10 125666 777
Q ss_pred HHHHHHccCcEEEE
Q 022296 201 AERCLEAGADMIMI 214 (299)
Q Consensus 201 ~~~dLeAGA~~VIi 214 (299)
++..++.|.+.|-+
T Consensus 236 l~~~~~l~~~~is~ 249 (449)
T PRK09058 236 LAIVRDLGLDGVDL 249 (449)
T ss_pred HHHHHhcCCCEEEE
Confidence 88888899987754
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=1 Score=46.60 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-++.+++.+.+.|+|.+-|.|..-++ +.....|+.+++.|..+...+... .+ +..
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd~lndv--~nl~~ai~~vk~ag~~~~~~i~yt--~s---p~~------------------ 152 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFDALNDP--RNLEHAMKAVKKVGKHAQGTICYT--VS---PIH------------------ 152 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCChH--HHHHHHHHHHHHhCCeEEEEEEEe--cC---CCC------------------
Confidence 68899999999999999999999988 555678999999998776655441 11 111
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+++.+ ++.+++-.++||+.|- |.|..|-.....+.++++.+
T Consensus 153 --------t~e~~---~~~a~~l~~~Gad~I~-----IkDtaGll~P~~~~~LV~~L 193 (499)
T PRK12330 153 --------TVEGF---VEQAKRLLDMGADSIC-----IKDMAALLKPQPAYDIVKGI 193 (499)
T ss_pred --------CHHHH---HHHHHHHHHcCCCEEE-----eCCCccCCCHHHHHHHHHHH
Confidence 26777 8889999999999774 67778888877777777554
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.5 Score=39.00 Aligned_cols=96 Identities=15% Similarity=0.270 Sum_probs=63.1
Q ss_pred hhHHHHHHHhhcc-cccEEEee------------CcccccCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCch
Q 022296 40 HNVLEDIFESMGQ-FVDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSA 102 (299)
Q Consensus 40 ~~~l~DlLe~ag~-yID~lKfg------------~GTs~l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~ 102 (299)
+..+.+.-+.+-+ ..|.+++- +|++.+-..+.+.+.++-.++. ++.+.- .+|-+. ..
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~------~~ 139 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE------EE 139 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc------hH
Confidence 4455555544444 68999885 5666677788889999888764 223332 234221 26
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHH
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKS 141 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~ 141 (299)
..++++.+.+.|++.|.|+.++... ......++++++++
T Consensus 140 ~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~ 180 (231)
T cd02801 140 TLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE 180 (231)
T ss_pred HHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh
Confidence 7788899999999999999987532 21223466777776
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.73 Score=45.04 Aligned_cols=114 Identities=10% Similarity=0.045 Sum_probs=76.3
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (299)
.|-.-.+.+|-+ |+=....++.+.|++.|+-+++. .-.++.=+++ .......+++.++.|.+.+...|.+
T Consensus 18 ~LaaAVS~AGgL------G~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~---~~~~~~~~~~~l~vi~e~~v~~V~~ 88 (320)
T cd04743 18 EFAVAVAEGGGL------PFIALALMRGEQVKALLEETAELLGDKPWGVGIL---GFVDTELRAAQLAVVRAIKPTFALI 88 (320)
T ss_pred HHHHHHHhCCcc------ccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEe---ccCCCcchHHHHHHHHhcCCcEEEE
Confidence 455555666632 33334467788899999999884 3333220220 0011124789999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
+-|. |. . ++++++.|.+|.+.++- ++.
T Consensus 89 ~~G~---P~----~-~~~lk~~Gi~v~~~v~s---------------------------------------------~~~ 115 (320)
T cd04743 89 AGGR---PD----Q-ARALEAIGISTYLHVPS---------------------------------------------PGL 115 (320)
T ss_pred cCCC---hH----H-HHHHHHCCCEEEEEeCC---------------------------------------------HHH
Confidence 8663 32 1 58899988887753321 455
Q ss_pred HHHHHHccCcEEEEecc
Q 022296 201 AERCLEAGADMIMIDSD 217 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEar 217 (299)
+++.+++|||.||+|+.
T Consensus 116 A~~a~~~GaD~vVaqG~ 132 (320)
T cd04743 116 LKQFLENGARKFIFEGR 132 (320)
T ss_pred HHHHHHcCCCEEEEecC
Confidence 68899999999999997
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.6 Score=42.02 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=57.9
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
.+.++..+.. ++++++.+-+.+.+.|-.+-|.- . .++|+.+++.|.+|.+.++-
T Consensus 92 ~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~G~p---~---~~~i~~l~~~gi~v~~~v~s------------------- 145 (330)
T PF03060_consen 92 LELCIEEGVP-FEEQLDVALEAKPDVVSFGFGLP---P---PEVIERLHAAGIKVIPQVTS------------------- 145 (330)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHS--SEEEEESSSC-------HHHHHHHHHTT-EEEEEESS-------------------
T ss_pred HHHHHHhCcc-cccccccccccceEEEEeecccc---h---HHHHHHHHHcCCccccccCC-------------------
Confidence 4455555522 77888888888999999998863 2 35889999998887663321
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc---cccc-CCCcccHHHHHHHHhccC
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD---DVCK-HADSLRADIIAKVIGRLG 239 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar---gi~d-~~G~~r~d~i~~ii~~l~ 239 (299)
++.++..+++|||.||+|+- |-.. +.+ --..++.++.+.++
T Consensus 146 --------------------------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~~ 190 (330)
T PF03060_consen 146 --------------------------VREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAVD 190 (330)
T ss_dssp --------------------------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH-S
T ss_pred --------------------------HHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhcC
Confidence 55668899999999999985 2221 222 13445555555444
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=1 Score=45.83 Aligned_cols=96 Identities=21% Similarity=0.263 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-++++++.+.+.|++.|-|.+..-++. .....|+.+++.|+.| ++.+-... + | +
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~--n~~~~v~~ak~~G~~v--~~~i~~t~---~------------p--~----- 150 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR--NLETAVKATKKAGGHA--QVAISYTT---S------------P--V----- 150 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH--HHHHHHHHHHHcCCeE--EEEEEeec---C------------C--C-----
Confidence 578899999999999999999877775 3567899999999876 44442111 0 1 0
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ ++.++...++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 -------~~~~~~---~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~lv~al 192 (448)
T PRK12331 151 -------HTIDYF---VKLAKEMQEMGADSIC-----IKDMAGILTPYVAYELVKRI 192 (448)
T ss_pred -------CCHHHH---HHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 126777 8888999999999764 67888888887777777554
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.27 E-value=2.2 Score=40.84 Aligned_cols=149 Identities=15% Similarity=0.204 Sum_probs=101.8
Q ss_pred chhHHHHHHHh-hcccccEEEeeCcccc-c-----------------CChhHHHHHHHHHHhCCceecCC--cHHHHHHH
Q 022296 39 SHNVLEDIFES-MGQFVDGLKFSGGSHS-L-----------------MPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIR 97 (299)
Q Consensus 39 g~~~l~DlLe~-ag~yID~lKfg~GTs~-l-----------------~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~ 97 (299)
++..+.+++.. --.-.|++=||+=.|= + +..+..-+.++..++.++.+.-+ |++--.+.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~ 108 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFN 108 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHH
Confidence 45566666665 4455899999986551 1 12223446667777777766555 78887788
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
+| +++|++.|++.|+|.+=| .+||.|+..++...++++|+..++=+.. .
T Consensus 109 ~G---ie~F~~~~~~~GvdGliv----pDLP~ee~~~~~~~~~~~gi~~I~lvaP---------------------t--- 157 (265)
T COG0159 109 YG---IEKFLRRAKEAGVDGLLV----PDLPPEESDELLKAAEKHGIDPIFLVAP---------------------T--- 157 (265)
T ss_pred hh---HHHHHHHHHHcCCCEEEe----CCCChHHHHHHHHHHHHcCCcEEEEeCC---------------------C---
Confidence 85 999999999999999876 5799999999999999988876653333 1
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-ccccCCCcccHHHHHHHHhc
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-gi~d~~G~~r~d~i~~ii~~ 237 (299)
.+ .+. +++-.++..-+|..=++ |++........+ +.+++++
T Consensus 158 ---------t~--~~r-------l~~i~~~a~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~ 199 (265)
T COG0159 158 ---------TP--DER-------LKKIAEAASGFIYYVSRMGVTGARNPVSAD-VKELVKR 199 (265)
T ss_pred ---------CC--HHH-------HHHHHHhCCCcEEEEecccccCCCcccchh-HHHHHHH
Confidence 00 122 24455666677777787 888777664444 5555544
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=2.3 Score=40.32 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=84.6
Q ss_pred hcccccEEEeeCcccccCChhHHHHHHHHHHhCCc--eecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-C
Q 022296 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-G 123 (299)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~G---tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd-G 123 (299)
+.+|+|++|+|-+...= .+.|++ +-+.|. .+..| |.-|.. .-++++++-|-.-|=+=. |
T Consensus 95 ~~e~vdilqIgs~~~~n--~~LL~~----va~tgkPVilk~G~~~t~~e~~---------~A~e~i~~~Gn~~i~L~eRg 159 (250)
T PRK13397 95 AYDYLDVIQVGARNMQN--FEFLKT----LSHIDKPILFKRGLMATIEEYL---------GALSYLQDTGKSNIILCERG 159 (250)
T ss_pred HHhcCCEEEECcccccC--HHHHHH----HHccCCeEEEeCCCCCCHHHHH---------HHHHHHHHcCCCeEEEEccc
Confidence 34589999999765444 334443 223455 45567 333332 233445667776555555 7
Q ss_pred cccCChhHH----HHHHHHHHH-cCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhH
Q 022296 124 SLEIPEETL----LRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKS 198 (299)
Q Consensus 124 ti~i~~~~r----~~lI~~~~~-~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 198 (299)
+-.-|...+ ++.|..+++ .++. +.+- +....| . -+.+ .
T Consensus 160 ~~~Y~~~~~n~~dl~ai~~lk~~~~lP----Vivd-~SHs~G---~--------------------------r~~v---~ 202 (250)
T PRK13397 160 VRGYDVETRNMLDIMAVPIIQQKTDLP----IIVD-VSHSTG---R--------------------------RDLL---L 202 (250)
T ss_pred cCCCCCccccccCHHHHHHHHHHhCCC----eEEC-CCCCCc---c--------------------------cchH---H
Confidence 766665544 466777776 2322 1120 011111 1 1223 4
Q ss_pred HHHHHHHHccCcEEEEecc-----ccccCCCcccHHHHHHHHhccCC
Q 022296 199 RRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
..++..+.+||+-+|||-- -++|..-.+..+.++++++++..
T Consensus 203 ~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 203 PAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred HHHHHHHHhCCCEEEEEecCCcccccCchhhhCCHHHHHHHHHHhcc
Confidence 5578899999999999983 69999999999999999987653
|
|
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=92.17 E-value=2 Score=40.89 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=72.7
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhC----CceecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~----gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
.+.++.++++.+.++ +.-+.|.+|--.+.+ .+.+.++.++++ .|.+.| |++ ++++++.+++
T Consensus 50 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~--~l~~li~~i~~~~~~~~i~itTNG~l-----------l~~~~~~L~~ 116 (331)
T PRK00164 50 SLEEIERLVRAFVALGVRKVRLTGGEPLLRK--DLEDIIAALAALPGIRDLALTTNGYL-----------LARRAAALKD 116 (331)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcCcc--CHHHHHHHHHhcCCCceEEEEcCchh-----------HHHHHHHHHH
Confidence 556777777766655 788999999988775 588999999887 244455 543 3345677888
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccceeee
Q 022296 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPKFAV 152 (299)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E~gv 152 (299)
.|.+.|-||=.+.+ -+.+...+.|+.+++.|+ .++-.+-+
T Consensus 117 agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 117 AGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred cCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 99999999955432 345777889999999998 55544433
|
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=3 Score=40.43 Aligned_cols=100 Identities=25% Similarity=0.290 Sum_probs=69.8
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (299)
....+.++++.+.++ +-.+-|.+|--.+.| .+.+.++.+++.|+.+ .| |+++- ++.++.+++.|
T Consensus 47 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~--~~~~il~~~~~~g~~~~i~TNG~ll~----------~~~~~~L~~~g 114 (378)
T PRK05301 47 STEEWIRVLREARALGALQLHFSGGEPLLRK--DLEELVAHARELGLYTNLITSGVGLT----------EARLAALKDAG 114 (378)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCccCCch--hHHHHHHHHHHcCCcEEEECCCccCC----------HHHHHHHHHcC
Confidence 455677777765443 456788889988877 5889999999999844 45 55421 34566678889
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCccccee
Q 022296 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
++.|.||=...+ . +.+.-.+.|+.+++.|+.|.--+
T Consensus 115 ~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~ 161 (378)
T PRK05301 115 LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNA 161 (378)
T ss_pred CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEE
Confidence 999999965541 1 35566778889999888754333
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=91.83 E-value=3 Score=39.56 Aligned_cols=144 Identities=12% Similarity=0.078 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHcC-CCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQVG-FDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~lG-F~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+.+.++++++.+.| .+.|=+.-. +..|+.++|.++++.+.+. +...+.+-.+
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~---~~~~~pvi~g--------------------- 76 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE---AKDQIALIAQ--------------------- 76 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHH---hCCCCcEEEe---------------------
Confidence 36888999999999 999988755 3579999999999998883 1111111100
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc-CCCceEEecCCc---hh
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEATNP---RT 252 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l-~~eklifEAP~k---~q 252 (299)
+...+.++. ++.++..-++|||.|++=.=-.+..+-+---+-..++++.. ++.=+++-.|.. ..
T Consensus 77 ---------v~~~~t~~~---i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l 144 (290)
T TIGR00683 77 ---------VGSVNLKEA---VELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNM 144 (290)
T ss_pred ---------cCCCCHHHH---HHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCc
Confidence 011125566 88999999999999999443222222111111223344444 355566666632 22
Q ss_pred HHHHHHHhCCCccc-c--cCCCCchhhhhhh
Q 022296 253 SEWFIRRYGPKVNL-F--VDHSQVMDLECLR 280 (299)
Q Consensus 253 Q~~fI~~fG~~VNL-g--I~~~eVi~LE~LR 280 (299)
....|.++-..-|+ | -...++-.+..++
T Consensus 145 ~~~~i~~L~~~pnv~giK~s~~d~~~~~~~~ 175 (290)
T TIGR00683 145 GIEQFGELYKNPKVLGVKFTAGDFYLLERLK 175 (290)
T ss_pred CHHHHHHHhcCCCEEEEEeCCCCHHHHHHHH
Confidence 33444444433344 3 2334555555554
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.6 Score=44.88 Aligned_cols=142 Identities=16% Similarity=0.155 Sum_probs=100.2
Q ss_pred ccEEEeeCcccccCChh-----------HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022296 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (299)
++.+-+...+|-++-+. .+.+-++.++++|..|..+ +|.+..-+++.+.++++.+.+.|.+.|-+.|
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~--~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFS--AEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 45566666666554322 2468899999999987754 2333344555788888999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-.--+.+++-.++|+.++++ +.- ...+++.+. .| .... +..
T Consensus 171 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~H~H-------ND--------------------------~GlA---vAN 213 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRER-VPNIDKAIISVHCH-------ND--------------------------LGLA---VAN 213 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHh-CCCcccceEEEEec-------CC--------------------------CCHH---HHH
Confidence 99999999999999999874 210 013555321 11 2333 566
Q ss_pred HHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 201 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
+...++|||++ |++- |+=+..||...+.+-..+.
T Consensus 214 slaAv~aGa~~--Vd~Tv~GlGERaGNa~lE~vv~~L~ 249 (513)
T PRK00915 214 SLAAVEAGARQ--VECTINGIGERAGNAALEEVVMALK 249 (513)
T ss_pred HHHHHHhCCCE--EEEEeecccccccCccHHHHHHHHH
Confidence 67889999996 5775 8888899988877665553
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=91.60 E-value=5 Score=37.08 Aligned_cols=103 Identities=16% Similarity=0.274 Sum_probs=64.1
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcc-cccCChhHHHH-----------------HHHHHHh-CCceecCCcHHHHHHHh
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGS-HSLMPKPFIEE-----------------VVKRAHQ-HDVYVSTGDWAEHLIRN 98 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GT-s~l~p~~~l~e-----------------KI~l~~~-~gV~v~~GtlfE~a~~q 98 (299)
.+..+.+.+...-+ -+|++=+|.=. -.+++-..++. .++..++ .++++..=+.+...+..
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 44455554444433 49999999411 12344344442 3333343 24443221334444444
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
| +++|++.|++.|++.|=+-| +|.|+..++++.++++|+++.+
T Consensus 92 G---~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 92 G---LERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred C---HHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 3 89999999999999998864 5678888999999999887544
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=91.53 E-value=5.5 Score=35.06 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=41.5
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
..+.+.+.-+++|=+- +..+...+.+-++.++++|+++.++ ..+|....+..+.+.++|.|.|-+.
T Consensus 68 ~~~~~~~~Gad~i~vh-------~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL-------GVADDATIKGAVKAAKKHGKEVQVD-------LINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEe-------ccCCHHHHHHHHHHHHHcCCEEEEE-------ecCCCChHHHHHHHHHcCCCEEEEc
Confidence 3666666665555433 2234445788888899999977642 0012223344455667799999886
Q ss_pred CCc
Q 022296 122 VGS 124 (299)
Q Consensus 122 dGt 124 (299)
.|+
T Consensus 134 pg~ 136 (206)
T TIGR03128 134 TGL 136 (206)
T ss_pred CCc
Confidence 654
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.47 E-value=12 Score=35.03 Aligned_cols=176 Identities=14% Similarity=0.128 Sum_probs=101.0
Q ss_pred chhHHHHHHHh-hcccccEEEeeCccc-ccCCh-----------------hHHHHHHHHHHh--CCceecCC-cHHHHHH
Q 022296 39 SHNVLEDIFES-MGQFVDGLKFSGGSH-SLMPK-----------------PFIEEVVKRAHQ--HDVYVSTG-DWAEHLI 96 (299)
Q Consensus 39 g~~~l~DlLe~-ag~yID~lKfg~GTs-~l~p~-----------------~~l~eKI~l~~~--~gV~v~~G-tlfE~a~ 96 (299)
.+..+.+++.. .-.-+|++=+|.=.| .+.+- +.+-+-++-.++ .++++. - +...-.+
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~ 100 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIF 100 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHh
Confidence 44555664443 344599999997321 01111 122233333443 355544 3 5556666
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
..| +++|++.|++.|++.|=|=| +|.++..++++.+++.|+.+.+=+.- .
T Consensus 101 ~~G---~e~f~~~~~~aGvdgviipD----lp~ee~~~~~~~~~~~gl~~i~lv~P---------------------~-- 150 (256)
T TIGR00262 101 RKG---VEEFYAKCKEVGVDGVLVAD----LPLEESGDLVEAAKKHGVKPIFLVAP---------------------N-- 150 (256)
T ss_pred hhh---HHHHHHHHHHcCCCEEEECC----CChHHHHHHHHHHHHCCCcEEEEECC---------------------C--
Confidence 554 89999999999999998875 57788899999999988875432222 1
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHH---HHHhccCCCceEEecCCc-hh
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA---KVIGRLGLEKTMFEATNP-RT 252 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~---~ii~~l~~eklifEAP~k-~q 252 (299)
|. .+. ++.+.+ ...|--++|- ..|++.....+..++.+ ++-+..+. .|+.+-=-+ ..
T Consensus 151 ---------T~---~er----i~~i~~-~~~gfiy~vs-~~G~TG~~~~~~~~~~~~i~~lr~~~~~-pi~vgfGI~~~e 211 (256)
T TIGR00262 151 ---------AD---DER----LKQIAE-KSQGFVYLVS-RAGVTGARNRAASALNELVKRLKAYSAK-PVLVGFGISKPE 211 (256)
T ss_pred ---------CC---HHH----HHHHHH-hCCCCEEEEE-CCCCCCCcccCChhHHHHHHHHHhhcCC-CEEEeCCCCCHH
Confidence 00 111 333322 2334455544 23777665455555333 33232222 566666554 66
Q ss_pred HHHHHHHhCCCc
Q 022296 253 SEWFIRRYGPKV 264 (299)
Q Consensus 253 Q~~fI~~fG~~V 264 (299)
|..-+..+|.|.
T Consensus 212 ~~~~~~~~GADg 223 (256)
T TIGR00262 212 QVKQAIDAGADG 223 (256)
T ss_pred HHHHHHHcCCCE
Confidence 777788888873
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.86 Score=41.70 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=32.9
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHH
Q 022296 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVR 137 (299)
Q Consensus 83 gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~ 137 (299)
||.++.|- -.+ |. +-+.+.++.||+.|+.+.=.++|+. |.+...+++.
T Consensus 41 GVt~SGGE---Pll-q~-~fl~~l~~~~k~~gi~~~leTnG~~--~~~~~~~l~~ 88 (213)
T PRK10076 41 GVTLSGGE---VLM-QA-EFATRFLQRLRLWGVSCAIETAGDA--PASKLLPLAK 88 (213)
T ss_pred EEEEeCch---HHc-CH-HHHHHHHHHHHHcCCCEEEECCCCC--CHHHHHHHHH
Confidence 66666662 222 22 1457899999999999999999986 4455545544
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=91.20 E-value=3.1 Score=40.73 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=90.8
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
..+-+.|..+| ||.+=+||-++.=.+ .+.++...+.+ ..++ +| .+ ..++-++.+.+.|.+.|
T Consensus 26 ~~ia~~L~~~G--v~~IEvG~p~~~~~~----~e~i~~i~~~~~~~~i~--~~-----~r---~~~~di~~a~~~g~~~i 89 (365)
T TIGR02660 26 LAIARALDEAG--VDELEVGIPAMGEEE----RAVIRAIVALGLPARLM--AW-----CR---ARDADIEAAARCGVDAV 89 (365)
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCHHH----HHHHHHHHHcCCCcEEE--EE-----cC---CCHHHHHHHHcCCcCEE
Confidence 35566778888 889999976654222 23344444432 3222 11 12 12455788889999999
Q ss_pred EecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 119 ELNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 119 EISdGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
-+...+-+ .+.++ -.+.|+.+++.|++| +|+-.+. .
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v--~~~~ed~-----~------------------------- 137 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV--SVGGEDA-----S------------------------- 137 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEE--EEeecCC-----C-------------------------
Confidence 98876533 22222 337899999999864 3443110 0
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 138 -r~~~~~l---~~~~~~~~~~Ga~~i-----~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 138 -RADPDFL---VELAEVAAEAGADRF-----RFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred -CCCHHHH---HHHHHHHHHcCcCEE-----EEcccCCCCCHHHHHHHHHHH
Confidence 0126777 888888899999976 488999999988888877654
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.39 Score=45.17 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCcccccccccccCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~ 174 (299)
+.+.++++++-+.|.+.|=+.-.+ ..|+.++|.++++.+.+. | +.|. +|+
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi--~gv---------------------- 77 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVI--GNT---------------------- 77 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEE--EEC----------------------
Confidence 368889999999999999875443 489999999999998873 1 1111 122
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
...+..+. ++.++..-++|||.|++-.-
T Consensus 78 ------------~~~~t~~~---i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 78 ------------GSNSTREA---IHATEQGFAVGMHAALHINP 105 (280)
T ss_pred ------------CCccHHHH---HHHHHHHHHcCCCEEEEcCC
Confidence 11125566 89999999999999999764
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=91.11 E-value=1.4 Score=42.35 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=51.6
Q ss_pred hHHHHHHHhhcccccEEEeeCcccc------cCChhHHHHHHHHHHhC------Cc----eecCCcHHHHHHHhCCchHH
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH------DV----YVSTGDWAEHLIRNGPSAFK 104 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~------gV----~v~~GtlfE~a~~qg~~~~~ 104 (299)
..+..+++.++++.|++=+-+++-. ...++.+.+.++..++. ++ ++.|+ +- . +.+.
T Consensus 148 ~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-~~-----~--~~~~ 219 (327)
T cd04738 148 EDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-LS-----D--EELE 219 (327)
T ss_pred HHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC-CC-----H--HHHH
Confidence 4566666777788888888775443 34456677776666542 13 34443 11 1 1466
Q ss_pred HHHHHHHHcCCCEEEecCCcccC
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEI 127 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i 127 (299)
+..+.|.+.|.|.|.+++.+..+
T Consensus 220 ~ia~~l~~aGad~I~~~n~~~~~ 242 (327)
T cd04738 220 DIADVALEHGVDGIIATNTTISR 242 (327)
T ss_pred HHHHHHHHcCCcEEEEECCcccc
Confidence 77788899999999999987654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=91.10 E-value=2.4 Score=37.01 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=60.3
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC--CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF 115 (299)
.+....++++...++||.+|+|+ ...++.. -+-|+..+++ ++++... +.. ++ -..+++.+.+.|.
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~--~~~~~~g--~~~i~~i~~~~~~~~i~~~~~v~------~~--~~~~~~~~~~aGa 78 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGT--PLIKSEG--MEAVRALREAFPDKIIVADLKTA------DA--GALEAEMAFKAGA 78 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCC--HHHHHhC--HHHHHHHHHHCCCCEEEEEEEec------cc--cHHHHHHHHhcCC
Confidence 56788899999999999999964 2222211 2344444443 6655443 222 21 1234688999999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
+.|=+..-+ +.+.-.++++.+++.|.+
T Consensus 79 d~i~~h~~~---~~~~~~~~i~~~~~~g~~ 105 (202)
T cd04726 79 DIVTVLGAA---PLSTIKKAVKAAKKYGKE 105 (202)
T ss_pred CEEEEEeeC---CHHHHHHHHHHHHHcCCe
Confidence 999987654 234556799999998765
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=8.2 Score=36.54 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=67.8
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHh-CCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---- 125 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~-~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---- 125 (299)
-+..+-|..|+...++.+.+.+.++..++ .++.+. +|. .-++.++..++.|++.|-++--+.
T Consensus 86 g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l~~Lk~aG~~~v~~glEs~~~~~ 154 (323)
T PRK07094 86 GYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEYKAWKEAGADRYLLRHETADKEL 154 (323)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 46778888887666777889999999998 477543 332 236788899999999987755444
Q ss_pred ------cCChhHHHHHHHHHHHcCCcccceeee
Q 022296 126 ------EIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
..+.+++.+.|+.+++.|+.|.+-+-+
T Consensus 155 ~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ii 187 (323)
T PRK07094 155 YAKLHPGMSFENRIACLKDLKELGYEVGSGFMV 187 (323)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCeecceEEE
Confidence 477899999999999999987664433
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=91.04 E-value=5 Score=38.64 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHH
Q 022296 70 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLL 133 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~ 133 (299)
+.+..-=++++.-+|+|.- .||-+.. .+.+-++...+.|.-.|-|-|+.. -+|.++..
T Consensus 62 e~~~~~~~I~~~~~lPv~aD~d~GyG~~~------~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~ 135 (290)
T TIGR02321 62 THLEMMRAIASTVSIPLIADIDTGFGNAV------NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQ 135 (290)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHH
Confidence 3444445566777787774 1343221 244556677799999999988751 25888888
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEE
Q 022296 134 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIM 213 (299)
Q Consensus 134 ~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VI 213 (299)
+-|+.+++. +.-++|-+ ...+ |. + |. + ...++. |+++++..+||||.|.
T Consensus 136 ~kI~Aa~~a--~~~~d~~I---~ART----Da----~-----~~-------~---~g~deA---I~Ra~aY~eAGAD~if 184 (290)
T TIGR02321 136 GKIAAATAA--RADRDFVV---IARV----EA----L-----IA-------G---LGQQEA---VRRGQAYEEAGADAIL 184 (290)
T ss_pred HHHHHHHHh--CCCCCEEE---EEEe----cc----c-----cc-------c---CCHHHH---HHHHHHHHHcCCCEEE
Confidence 888888775 22234444 1111 10 0 00 0 114677 9999999999999999
Q ss_pred EeccccccCCCcccHHHHHHHHhccCC-Cce-EEec
Q 022296 214 IDSDDVCKHADSLRADIIAKVIGRLGL-EKT-MFEA 247 (299)
Q Consensus 214 iEargi~d~~G~~r~d~i~~ii~~l~~-ekl-ifEA 247 (299)
+|+. ....+.+.++.+.++. -.+ +.+.
T Consensus 185 v~~~-------~~~~~ei~~~~~~~~~p~pv~~~~~ 213 (290)
T TIGR02321 185 IHSR-------QKTPDEILAFVKSWPGKVPLVLVPT 213 (290)
T ss_pred ecCC-------CCCHHHHHHHHHhcCCCCCeEEecC
Confidence 9972 2357889999988873 234 5554
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.02 E-value=3.7 Score=42.51 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=117.9
Q ss_pred CCceeEe----cCCCCCCcchhHHHHHHHhhc-ccccEEEeeCcccccCChhHHHHHHHHHHhCCcee-----cCCcHHH
Q 022296 24 FGVTEMR----SPHYTLSSSHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWAE 93 (299)
Q Consensus 24 ~GlT~V~----DkGl~~~~g~~~l~DlLe~ag-~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v-----~~GtlfE 93 (299)
+-+.|.. =+||.-. .-+-.+..++.+. .-||++-+.-..+-+ ++++.-++.++++|-.+ |+++-
T Consensus 77 t~lqmL~Rg~N~vGy~~y-~ddvv~~fv~~a~~~Gidi~RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp-- 150 (499)
T PRK12330 77 SRLQMLLRGQNLLGYRHY-EDEVVDRFVEKSAENGMDVFRVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSP-- 150 (499)
T ss_pred CeEEEEEcccccCCccCc-chhHHHHHHHHHHHcCCCEEEEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCC--
Confidence 4466665 4666555 4445566666654 559999998876666 57999999999999844 23321
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccC
Q 022296 94 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (299)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~ 173 (299)
...++.+.++.+.+.+.|.+.|=|.|-.--+.+++-.++|+.+++. +...-.+++.+. .+
T Consensus 151 ---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~-~~~~ipI~~H~H-nt--------------- 210 (499)
T PRK12330 151 ---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA-CGEDTRINLHCH-ST--------------- 210 (499)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh-CCCCCeEEEEeC-CC---------------
Confidence 2244567777788889999999999999999999999999999984 100112444221 11
Q ss_pred CCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 174 APRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
.... +...-..++|||+.|=.=-.|+=...|+.-++.+-..++..+.+
T Consensus 211 -----------------~GlA---~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 211 -----------------TGVT---LVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGTGYT 258 (499)
T ss_pred -----------------CCcH---HHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhcCCC
Confidence 1222 55567899999996433334888888998888777777666643
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.01 E-value=4.4 Score=37.96 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=49.7
Q ss_pred hHHHHHHHhhccc-ccEEEeeCcc--------cccCChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHH
Q 022296 41 NVLEDIFESMGQF-VDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (299)
Q Consensus 41 ~~l~DlLe~ag~y-ID~lKfg~GT--------s~l~p~~~l~eKI~l~~~~-gV~v~~G-tlfE~a~~qg~~~~~~yl~~ 109 (299)
..+.+..+.+-++ .|++=+-++| .....++.+.+.++-.+++ ++++..- +. +.+.+.+..+.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-------~~~~~~~~a~~ 174 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-------NVTDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-------CchhHHHHHHH
Confidence 3444444444455 6777664443 3445667788888888887 7766642 11 11246677788
Q ss_pred HHHcCCCEEEecCCcc
Q 022296 110 CKQVGFDTIELNVGSL 125 (299)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (299)
+.+.|.|.|-++|.+.
T Consensus 175 ~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 175 AEEAGADGLTLINTLK 190 (296)
T ss_pred HHHcCCCEEEEECCCc
Confidence 8899999998876543
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=90.92 E-value=2.1 Score=40.10 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.+.++++++-+.|.+.|=+.-. +..|+.++|.++++.+.+. +...+-+-
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~---~~~~~~vi------------------------- 71 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDL---VNGRVPVI------------------------- 71 (285)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHH---hCCCCeEE-------------------------
Confidence 6788899999999999987322 2589999999999998884 11111110
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-cccHH
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRAD 229 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~---~G-~~r~d 229 (299)
+++...+.++. +++++..-++|||.|++=.- -||+. .| .+..+
T Consensus 72 -----~gv~~~s~~~~---i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~ 143 (285)
T TIGR00674 72 -----AGTGSNATEEA---ISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPE 143 (285)
T ss_pred -----EeCCCccHHHH---HHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHH
Confidence 00011225666 99999999999999998752 14543 23 45677
Q ss_pred HHHHHHhccCCCceEE--e-cCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 230 IIAKVIGRLGLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 230 ~i~~ii~~l~~eklif--E-AP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
++.++++ .+ +++. + .++......++.++++++.+....+ -+-+++++.|.-|
T Consensus 144 ~l~~L~~-~~--~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G~d-~~~~~~~~~G~~G 198 (285)
T TIGR00674 144 TVKRLAE-EP--NIVAIKEATGNLERISEIKAIAPDDFVVLSGDD-ALTLPMMALGGKG 198 (285)
T ss_pred HHHHHHc-CC--CEEEEEeCCCCHHHHHHHHHhcCCCeEEEECch-HHHHHHHHcCCCE
Confidence 7777763 33 3433 3 3345556667777777666654433 3456777766544
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=90.86 E-value=2.8 Score=40.14 Aligned_cols=124 Identities=12% Similarity=0.037 Sum_probs=77.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+++.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv------------------------ 84 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGA------------------------ 84 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEe------------------------
Confidence 378899999999999999885543 489999999999998873 1011111122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc-CCCceEEecCCc---hh
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEATNP---RT 252 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l-~~eklifEAP~k---~q 252 (299)
...+.++. ++.++..-++|||.|++=.--.+..+-+---+-..+|++.. ++.=+++-.|.. +.
T Consensus 85 ----------~~~~t~~a---i~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l 151 (309)
T cd00952 85 ----------TTLNTRDT---IARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDF 151 (309)
T ss_pred ----------ccCCHHHH---HHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCC
Confidence 11225666 99999999999999999875222222111122234455555 355566666633 33
Q ss_pred HHHHHHHhC
Q 022296 253 SEWFIRRYG 261 (299)
Q Consensus 253 Q~~fI~~fG 261 (299)
-..+++++-
T Consensus 152 ~~~~l~~L~ 160 (309)
T cd00952 152 PRAAWAELA 160 (309)
T ss_pred CHHHHHHHh
Confidence 344555554
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=90.86 E-value=1.7 Score=45.66 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-++++++.+.+.|++.|-|.+..-++ +.-.+.|+.+++.|+.|. +.+-.-. +| +
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p--~----- 150 (592)
T PRK09282 97 VVEKFVEKAAENGIDIFRIFDALNDV--RNMEVAIKAAKKAGAHVQ--GTISYTT---------------SP--V----- 150 (592)
T ss_pred hhHHHHHHHHHCCCCEEEEEEecChH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CC--C-----
Confidence 58899999999999999999888776 455678999999998754 3331111 01 1
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ ++.+++-.++||+.|- |+|..|-.....+.++++.+
T Consensus 151 -------~t~~~~---~~~a~~l~~~Gad~I~-----i~Dt~G~~~P~~~~~lv~~l 192 (592)
T PRK09282 151 -------HTIEKY---VELAKELEEMGCDSIC-----IKDMAGLLTPYAAYELVKAL 192 (592)
T ss_pred -------CCHHHH---HHHHHHHHHcCCCEEE-----ECCcCCCcCHHHHHHHHHHH
Confidence 126777 8888999999999774 78999999998888888655
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=90.78 E-value=2.4 Score=40.74 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHH
Q 022296 71 FIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYV 136 (299)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI 136 (299)
.+..--++++..+|+|.- . ||-+ +..+.+.++...+.|...|-|-|.+. -+|.++.++-|
T Consensus 61 ~~~~~~~I~~~~~iPviaD~d~GyG~------~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI 134 (285)
T TIGR02317 61 VAEDARRITRVTDLPLLVDADTGFGE------AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKI 134 (285)
T ss_pred HHHHHHHHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHH
Confidence 344444456667888775 2 4533 22455677888899999999999653 36888888888
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 137 ~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
+.+++.-- -++|-+ ...+ |. + + .. ..++. |+++++..+||||.|.+|+
T Consensus 135 ~Aa~~a~~--~~d~~I---iART----Da-~--------~---------~~--g~deA---I~Ra~ay~~AGAD~vfi~g 182 (285)
T TIGR02317 135 AAAVDAKR--DEDFVI---IART----DA-R--------A---------VE--GLDAA---IERAKAYVEAGADMIFPEA 182 (285)
T ss_pred HHHHHhcc--CCCEEE---EEEc----Cc-c--------c---------cc--CHHHH---HHHHHHHHHcCCCEEEeCC
Confidence 88887421 133433 1111 10 0 0 01 15677 9999999999999999997
Q ss_pred cccccCCCcccHHHHHHHHhccC
Q 022296 217 DDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 217 rgi~d~~G~~r~d~i~~ii~~l~ 239 (299)
- -..+.++++.+.++
T Consensus 183 ~--------~~~e~i~~~~~~i~ 197 (285)
T TIGR02317 183 L--------TSLEEFRQFAKAVK 197 (285)
T ss_pred C--------CCHHHHHHHHHhcC
Confidence 2 12566777777766
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.76 E-value=8.1 Score=36.62 Aligned_cols=170 Identities=21% Similarity=0.251 Sum_probs=112.9
Q ss_pred CCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccC--C--hhHHHHHHHHHHh-CCceecC--C-cH
Q 022296 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM--P--KPFIEEVVKRAHQ-HDVYVST--G-DW 91 (299)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~--p--~~~l~eKI~l~~~-~gV~v~~--G-tl 91 (299)
+-+..|++.|...|. .+..++..++.|..|= .+-.+.|.+... . ++.+.+..+++.+ ..|..-. | .+
T Consensus 25 ~a~~~gv~~~~~~g~----~~~~~~~~~~la~~y~-~v~~~~G~HP~~~~~~~~~~~~~l~~~~~~~~~vvaIGEiGLDy 99 (256)
T COG0084 25 RAREAGVKKMVVVGT----DLEDFKRALELAEKYP-NVYAAVGVHPLDADEHSEEDLEELEQLAEHHPKVVAIGEIGLDY 99 (256)
T ss_pred HHHHcCCcEEEEeec----CHHHHHHHHHHHHhCC-CeEEEEeeCCCccccccHHHHHHHHHHHhcCCCeEEEEecccCc
Confidence 446679999999999 5558888888888886 888899988887 4 5567777777765 3443322 4 32
Q ss_pred H-----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022296 92 A-----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (299)
Q Consensus 92 f-----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~ 166 (299)
. +.-.++- .|..+++.+++++.-.|==+-+ ....+++.+++.+. +--|+-...+
T Consensus 100 ~~~~~~~~~~Q~~--~F~~ql~lA~~~~lPviIH~R~-------A~~d~~~iL~~~~~---~~~gi~HcFs--------- 158 (256)
T COG0084 100 YWDKEPDKERQEE--VFEAQLELAKELNLPVIIHTRD-------AHEDTLEILKEEGA---PVGGVLHCFS--------- 158 (256)
T ss_pred cccccccHHHHHH--HHHHHHHHHHHcCCCEEEEccc-------cHHHHHHHHHhcCC---CCCEEEEccC---------
Confidence 1 3444555 7999999999999877654443 23355666666543 1224432222
Q ss_pred ccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEe
Q 022296 167 FGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 246 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifE 246 (299)
.+ ++++++.++.| .+|=+=+- |+..+ ...+.+++..+|+++|+.|
T Consensus 159 --------------------Gs---------~e~a~~~~d~G-~yisisG~-itfk~----a~~~~ev~~~iPldrLL~E 203 (256)
T COG0084 159 --------------------GS---------AEEARKLLDLG-FYISISGI-VTFKN----AEKLREVARELPLDRLLLE 203 (256)
T ss_pred --------------------CC---------HHHHHHHHHcC-eEEEECce-eecCC----cHHHHHHHHhCCHhHeEec
Confidence 11 56679999999 44444322 44433 4457889999999999999
Q ss_pred cCCc
Q 022296 247 ATNP 250 (299)
Q Consensus 247 AP~k 250 (299)
..-|
T Consensus 204 TDsP 207 (256)
T COG0084 204 TDAP 207 (256)
T ss_pred cCCC
Confidence 6543
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=2.8 Score=43.35 Aligned_cols=145 Identities=11% Similarity=0.071 Sum_probs=101.1
Q ss_pred ccEEEeeCcccccCChhH-----------HHHHHHHHHhCCce-ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 54 VDGLKFSGGSHSLMPKPF-----------IEEVVKRAHQHDVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~-----------l~eKI~l~~~~gV~-v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
+|.+-+-..+|-++-+.. +.+-|++++++|.. |..|. |.+..-+++-+.++++.+.+.|-+.|-+.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--EDa~Rtd~efl~~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC--EDGGRSDKEFLCKILGEAIKAGATSVGIA 259 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc--ccccccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 356777777776664332 47788899999974 55553 44555555677889999999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCccc--ceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 122 VGSLEIPEETLLRYVRLVKSAGLKAK--PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~G~~v~--~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
|-.--+.+.+-.++|+.+++. +.-. ..+++.+. .| .... +.
T Consensus 260 DTvG~~tP~~v~~lV~~l~~~-~~~~~~i~I~~H~H-------ND--------------------------~GlA---vA 302 (503)
T PLN03228 260 DTVGINMPHEFGELVTYVKAN-TPGIDDIVFSVHCH-------ND--------------------------LGLA---TA 302 (503)
T ss_pred cCCCCCCHHHHHHHHHHHHHH-hccccCceeEeccc-------CC--------------------------cChH---HH
Confidence 999999999999999999873 1100 11333211 11 2233 55
Q ss_pred HHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhc
Q 022296 200 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~ 237 (299)
.+-..++|||++|=.==-||=+..||.-.+.+-..+..
T Consensus 303 NslaAi~aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~~ 340 (503)
T PLN03228 303 NTIAGICAGARQVEVTINGIGERSGNASLEEVVMALKC 340 (503)
T ss_pred HHHHHHHhCCCEEEEeccccccccCCccHHHHHHHHHh
Confidence 56778999999985433488888999888776655543
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=2.8 Score=42.98 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=104.9
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~ 110 (299)
.++..+++ | +|.+-+...+|-++-+ +.+.+-++.++++|..|..+ +|.+...+++-+.++++.+
T Consensus 78 di~~a~~~-g--~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 78 DIDAALEC-D--VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS--GEDASRADLDFLKELYKAG 152 (488)
T ss_pred HHHHHHhC-C--cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE--EeeCCCCCHHHHHHHHHHH
Confidence 44444443 3 6778888888776422 34566678999999866543 1334444555677788888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccc
Q 022296 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIE 190 (299)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
.+.|.+.|-+.|-.--+.+.+-.++|+.+++. +. ..+++.+. . |
T Consensus 153 ~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~-~~--v~l~~H~H-N------D-------------------------- 196 (488)
T PRK09389 153 IEAGADRICFCDTVGILTPEKTYELFKRLSEL-VK--GPVSIHCH-N------D-------------------------- 196 (488)
T ss_pred HhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh-cC--CeEEEEec-C------C--------------------------
Confidence 99999999999999999999999999999874 22 23455322 1 1
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhc
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~ 237 (299)
.... +-.+...++|||+. ||+- |+=+..||...+.+-..+..
T Consensus 197 ~GlA---vANalaAv~aGa~~--Vd~Ti~GiGERaGNa~lE~lv~~L~~ 240 (488)
T PRK09389 197 FGLA---VANTLAALAAGADQ--VHVTINGIGERAGNASLEEVVMALKH 240 (488)
T ss_pred ccHH---HHHHHHHHHcCCCE--EEEEcccccccccCccHHHHHHHHHh
Confidence 2333 56668899999996 6775 88889999988877665543
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=90.63 E-value=2.9 Score=40.43 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHH
Q 022296 70 PFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRY 135 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~l 135 (299)
+.+..--++++..+++|.- + ||-+.. .+.+.++...+.|.-.|-|-|... -+|.++..+-
T Consensus 64 e~~~~~~~I~~~~~lPv~aD~dtGyG~~~------~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~k 137 (294)
T TIGR02319 64 EQAINAKNIVLAVDVPVIMDADAGYGNAM------SVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGK 137 (294)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHH
Confidence 3444444566777888774 1 342211 234457778899999999999754 2688888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEe
Q 022296 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMID 215 (299)
Q Consensus 136 I~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiE 215 (299)
|+.+++.-= -++|-+ ...+ |. . . .. ..++. |+++++..+||||.|.+|
T Consensus 138 I~Aa~~A~~--~~d~~I---~ART----Da----~------~--------~~--g~dea---I~Ra~aY~eAGAD~ifi~ 185 (294)
T TIGR02319 138 IEAAVEARE--DEDFTI---IART----DA----R------E--------SF--GLDEA---IRRSREYVAAGADCIFLE 185 (294)
T ss_pred HHHHHHhcc--CCCeEE---EEEe----cc----c------c--------cC--CHHHH---HHHHHHHHHhCCCEEEec
Confidence 887776311 134444 1111 10 0 0 01 15677 999999999999999999
Q ss_pred ccccccCCCcccHHHHHHHHhccCC
Q 022296 216 SDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 216 argi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
+- ...+.+.++.+.++.
T Consensus 186 ~~--------~~~~ei~~~~~~~~~ 202 (294)
T TIGR02319 186 AM--------LDVEEMKRVRDEIDA 202 (294)
T ss_pred CC--------CCHHHHHHHHHhcCC
Confidence 62 245778888887764
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=90.57 E-value=2.7 Score=40.14 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=62.5
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
.|.++..- .+..++-|.++|-|-+| .+....|+.+.+.|.-|.-.+|..-... +..+.|.
T Consensus 91 ~e~a~~na-------~rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~gIpV~gHiGltPq~a-------~~~ggy~ 150 (263)
T TIGR00222 91 PEQALKNA-------ARVMQETGANAVKLEGG------EWLVETVQMLTERGVPVVGHLGLTPQSV-------NILGGYK 150 (263)
T ss_pred HHHHHHHH-------HHHHHHhCCeEEEEcCc------HhHHHHHHHHHHCCCCEEEecCCCceeE-------eecCCee
Confidence 56655442 46777889999999998 5567889999999999997777642211 0011111
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
... ..+-+.+++ |+++++-.+|||+.|.+|+
T Consensus 151 ~qg-----------rt~~~a~~~---i~~A~a~e~AGA~~ivlE~ 181 (263)
T TIGR00222 151 VQG-----------KDEEAAKKL---LEDALALEEAGAQLLVLEC 181 (263)
T ss_pred ecC-----------CCHHHHHHH---HHHHHHHHHcCCCEEEEcC
Confidence 110 011124667 9999999999999999998
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.8 Score=41.20 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=65.8
Q ss_pred HHHHHHcCCCEEEecCCcccC--------Chh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEI--------PEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i--------~~~----~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~ 174 (299)
++.+.+.|.+.|-+....-+. +.+ .-.+.|+.+++.|++|..-+..-|... .+.
T Consensus 85 ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~-----~~~--------- 150 (287)
T PRK05692 85 LEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP-----YEG--------- 150 (287)
T ss_pred HHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC-----CCC---------
Confidence 477888999999998655332 222 345799999999998765555432211 110
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.+++..++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 -------------~~~~~~~---~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 151 -------------EVPPEAV---ADVAERLFALGCYEIS-----LGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred -------------CCCHHHH---HHHHHHHHHcCCcEEE-----eccccCccCHHHHHHHHHHH
Confidence 0236778 8889999999999764 67777887777777766543
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=90.35 E-value=2 Score=42.36 Aligned_cols=150 Identities=8% Similarity=0.029 Sum_probs=88.3
Q ss_pred hHHHHHHHhhcccccEEEeeCcccc-cCCh-hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHS-LMPK-PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~-l~p~-~~l~eKI~l~~~-~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
-.+-+.|..+| ||.+=.|+..+. ..|. ..-+|-++.+++ .++.+ + .| + .+ .+=++.+.+.|.+.
T Consensus 71 i~ia~~L~~~G--V~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~-~-~l---~--~n----~~die~A~~~g~~~ 137 (347)
T PLN02746 71 VELIQRLVSSG--LPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARF-P-VL---T--PN----LKGFEAAIAAGAKE 137 (347)
T ss_pred HHHHHHHHHcC--CCEEEECCCcCcccccccccHHHHHHHHHhccCCce-e-EE---c--CC----HHHHHHHHHcCcCE
Confidence 34556777888 888988865432 1110 011222333332 22211 1 11 1 12 34577788899999
Q ss_pred EEecCCc--------ccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccC
Q 022296 118 IELNVGS--------LEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185 (299)
Q Consensus 118 IEISdGt--------i~i~~~~r----~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (299)
|-+.-.+ +..+.++= .++|+.+++.|++|.--+..-|+. .++
T Consensus 138 v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~-----p~~--------------------- 191 (347)
T PLN02746 138 VAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGC-----PIE--------------------- 191 (347)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecC-----Ccc---------------------
Confidence 9887433 23444443 369999999999874333332221 111
Q ss_pred CCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 186 ~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
...+++.+ ++.+++..++||+.|- |+|..|-..+..+.++++.+
T Consensus 192 -~r~~~~~l---~~~~~~~~~~Gad~I~-----l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 192 -GPVPPSKV---AYVAKELYDMGCYEIS-----LGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred -CCCCHHHH---HHHHHHHHHcCCCEEE-----ecCCcCCcCHHHHHHHHHHH
Confidence 01237788 8999999999999874 67788888877777666544
|
|
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=9.2 Score=35.92 Aligned_cols=169 Identities=15% Similarity=0.179 Sum_probs=103.9
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCC--hhHHHHHHHHHHhCCceecC---C-cHH---
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVST---G-DWA--- 92 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p--~~~l~eKI~l~~~~gV~v~~---G-tlf--- 92 (299)
+..|+..++.+|. .+...+..++.+..| +.+..+.|-+...- +..+.+..+++.+..| +.- | .+.
T Consensus 30 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~-~~v~~~~GiHP~~~~~~~~~~~l~~~~~~~~v-vaIGEiGLD~~~~~ 103 (265)
T PRK10812 30 AARDVKFCLAVAT----TLPGYRHMRDLVGER-DNVVFSCGVHPLNQDEPYDVEELRRLAAEEGV-VAMGETGLDYYYTP 103 (265)
T ss_pred HHcCCCEEEEeCC----CHHHHHHHHHHHhhC-CCeEEEEEeCCCCCCChhHHHHHHHHhcCCCE-EEEEeeecCcCCCC
Confidence 4669999999999 566888888888887 35777888776442 3445555555543333 222 3 232
Q ss_pred -HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 93 -EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 93 -E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
....++. -|+..++.++++|...+==+-+.. .+.++.+++.+.. +.-++-...+ |
T Consensus 104 ~~~~~Q~~--vf~~ql~lA~e~~~Pv~iH~r~a~-------~~~l~iL~~~~~~--~~~~v~H~fs--G----------- 159 (265)
T PRK10812 104 ETKVRQQE--SFRHHIQIGRELNKPVIVHTRDAR-------ADTLAILREEKVT--DCGGVLHCFT--E----------- 159 (265)
T ss_pred CCHHHHHH--HHHHHHHHHHHhCCCeEEEeeCch-------HHHHHHHHhhcCC--CCCEEEEeec--C-----------
Confidence 1223443 699999999999988775444322 2555555654432 1112311111 1
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCch
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 251 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~ 251 (299)
+ .+.+++.++.|.+.=+- |... .-+.+.+.+++..+|+++|+.|...|.
T Consensus 160 ----------------~---------~~~a~~~~~~G~~is~~---g~~t---~~~~~~~~~~~~~ipldrlLlETD~P~ 208 (265)
T PRK10812 160 ----------------D---------RETAGKLLDLGFYISFS---GIVT---FRNAEQLRDAARYVPLDRLLVETDSPY 208 (265)
T ss_pred ----------------C---------HHHHHHHHHCCCEEEEC---eeee---cCccHHHHHHHHhCChhhEEEecCCCC
Confidence 1 44558889999766443 2211 114567888999999999999987653
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=90.34 E-value=5 Score=41.22 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=100.4
Q ss_pred ccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022296 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (299)
.+.+-+-..||-++-+ +.+.+-+++++++|..|..+ .|.+..-+++-+.+.++.+.+.|-+.|-+.|
T Consensus 90 ~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~--~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 167 (494)
T TIGR00973 90 KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS--CEDAGRTEIPFLARIVEAAINAGATTINIPD 167 (494)
T ss_pred CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE--cCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5666666666665532 34557888999999877655 3444455566788888999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-.--+.+++-.++|+.++++ +.- ...+++.+. .| .... +..
T Consensus 168 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~H~H-------ND--------------------------~GlA---vAN 210 (494)
T TIGR00973 168 TVGYALPAEYGNLIKGLREN-VPNIDKAILSVHCH-------ND--------------------------LGLA---VAN 210 (494)
T ss_pred CCCCCCHHHHHHHHHHHHHh-hccccCceEEEEeC-------CC--------------------------CChH---HHH
Confidence 99999999999999999873 110 112444321 11 2333 566
Q ss_pred HHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 201 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
+...++|||++ ||+- |+=+..||...+.+-..+.
T Consensus 211 alaAv~aGa~~--vd~tv~GlGERaGNa~le~vv~~L~ 246 (494)
T TIGR00973 211 SLAAVQNGARQ--VECTINGIGERAGNAALEEVVMALK 246 (494)
T ss_pred HHHHHHhCCCE--EEEEeecccccccCccHHHHHHHHH
Confidence 67899999995 5775 8888899988777665553
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=89.95 E-value=2 Score=41.00 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=58.5
Q ss_pred hhHHHHHHHhhccc-ccEEEee------------CcccccCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCch
Q 022296 40 HNVLEDIFESMGQF-VDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSA 102 (299)
Q Consensus 40 ~~~l~DlLe~ag~y-ID~lKfg------------~GTs~l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~ 102 (299)
+..+.+..+.+-++ .|.+=+- .|+..+-.++.+.+.++-.++. ++++.. ++|-+ +...
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-----~~~~ 148 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-----AHIN 148 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-----Ccch
Confidence 33444444443333 6666553 3444555677888888877653 554432 34532 2124
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHH
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKS 141 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~ 141 (299)
..++.+.+.+.|.+.|-|+..+.. .+..-..++++.+++
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~ 189 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQ 189 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHH
Confidence 678899999999999999765432 222223578888877
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=89.93 E-value=2.5 Score=38.40 Aligned_cols=102 Identities=21% Similarity=0.135 Sum_probs=63.6
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec--------------CCc
Q 022296 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--------------TGD 90 (299)
Q Consensus 25 GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--------------~Gt 90 (299)
++..+.+=|+ + ....++++++. | +|.+ ..|+..+.+++.+++..+.+++..|.++ +=+
T Consensus 71 ~~pv~~~GGI--~-s~~d~~~~l~~-G--~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~ 142 (243)
T cd04731 71 FIPLTVGGGI--R-SLEDARRLLRA-G--ADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHG 142 (243)
T ss_pred CCCEEEeCCC--C-CHHHHHHHHHc-C--CceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcC
Confidence 3445555555 2 45566666663 2 5554 5678888888888888887765445433 212
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHH
Q 022296 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKS 141 (299)
Q Consensus 91 lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~ 141 (299)
|.+. ......++.+.+.+.|++.|.+++=+ ..-. ..++++++++
T Consensus 143 ~~~~----~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~ 190 (243)
T cd04731 143 GRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY---DLELIRAVSS 190 (243)
T ss_pred Ccee----cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC---CHHHHHHHHh
Confidence 4332 12356788899999999999996522 2222 2466777766
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=89.93 E-value=3.7 Score=38.60 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHc-CCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQV-GFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~l-GF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.+.++++++.+. |.+.|=+.-.| ..|+.++|.++++.+.+. +...+.+-.+
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~---~~~~~~viag---------------------- 76 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA---AKGKVTLIAH---------------------- 76 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH---hCCCCeEEec----------------------
Confidence 678889999888 99999776543 589999999999998883 1111111100
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc-CCCceEEecCC
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEATN 249 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l-~~eklifEAP~ 249 (299)
+...+.++. ++.++..-++||+.|++=.--.+..+-+--.+-...|++.. ++.=++.-.|.
T Consensus 77 --------v~~~~~~~a---i~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~ 138 (288)
T cd00954 77 --------VGSLNLKES---QELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPA 138 (288)
T ss_pred --------cCCCCHHHH---HHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 011125566 99999999999999997554222211111122334455556 45666666663
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=1 Score=42.48 Aligned_cols=105 Identities=13% Similarity=0.205 Sum_probs=70.9
Q ss_pred chhHHHHHHH-hhcccccEEEeeCccc-ccCChhHHHH-----------------HHHHHH--hCCceecCCcHHHHHHH
Q 022296 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIEE-----------------VVKRAH--QHDVYVSTGDWAEHLIR 97 (299)
Q Consensus 39 g~~~l~DlLe-~ag~yID~lKfg~GTs-~l~p~~~l~e-----------------KI~l~~--~~gV~v~~GtlfE~a~~ 97 (299)
.++.+.+++. ..-.-+|++=+|+=.| .+.+-..+++ .+.-.+ ..++++..=|++..++.
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~ 103 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQ 103 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhh
Confidence 4556666444 4455699999997542 1111112222 222222 23554443367777777
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022296 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
.| +++|++.|++.|++.+=|. +||.++..++++.+++.|+...+=+
T Consensus 104 ~G---~e~f~~~~~~aGvdGviip----DLp~ee~~~~~~~~~~~gl~~I~lv 149 (258)
T PRK13111 104 YG---VERFAADAAEAGVDGLIIP----DLPPEEAEELRAAAKKHGLDLIFLV 149 (258)
T ss_pred cC---HHHHHHHHHHcCCcEEEEC----CCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 75 9999999999999999996 6899999999999999999877533
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=89.71 E-value=2.8 Score=37.64 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHcC-CcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~~G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
+.++.|.+.|-+.|.+.......|. ++-.++++.+++.| +.+.+ ++ .
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv--~v---~-------------------------- 131 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA--DI---S-------------------------- 131 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE--EC---C--------------------------
Confidence 4679999999999988655555555 36678999999987 33222 11 0
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC---CcccHHHHHHHHhcc
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA---DSLRADIIAKVIGRL 238 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~---G~~r~d~i~~ii~~l 238 (299)
+ .+.+++..++|+++|.+...|..... .....+.+.++.+.+
T Consensus 132 -----t---------~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~ 176 (219)
T cd04729 132 -----T---------LEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL 176 (219)
T ss_pred -----C---------HHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc
Confidence 0 22347778899999998877654432 122345666666554
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=89.66 E-value=7.5 Score=37.04 Aligned_cols=155 Identities=12% Similarity=0.031 Sum_probs=97.8
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccCChh-----------HHHHHHHHHHhCCceecCCcHHHHHHHhCCc-----hH
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-----AF 103 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~-----~~ 103 (299)
.+.++..+++ =+|.+-+-..+|-.+.+. .+++-+++++++|+.|..+- |-+..-+++ -+
T Consensus 77 ~~die~A~~~---g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~ 151 (279)
T cd07947 77 KEDLKLVKEM---GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFV 151 (279)
T ss_pred HHHHHHHHHc---CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHH
Confidence 3455555554 345666666666554432 35678889999998665431 333333221 45
Q ss_pred HHHHHHHHHcCCC-EEEecCCcccCCh-------hHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCC
Q 022296 104 KEYVEDCKQVGFD-TIELNVGSLEIPE-------ETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 104 ~~yl~~~k~lGF~-~IEISdGti~i~~-------~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~ 174 (299)
+++++.+.+.|.+ .|=+.|-.--..+ ++-.++++.+++. ++ .-.+++..+.. |
T Consensus 152 ~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~-p~~~l~~H~Hn-------~---------- 213 (279)
T cd07947 152 NKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGV-PSENLEWHGHN-------D---------- 213 (279)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCC-CCceEEEEecC-------C----------
Confidence 6667777779999 6888887765544 4556888888773 21 11134553211 1
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhcc
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l 238 (299)
.... +..+-..++|||++ +++- |+=+..||.-++.+-..+..+
T Consensus 214 ----------------~Gla---~AN~laA~~aG~~~--vd~sv~GlGe~aGN~~tE~lv~~l~~~ 258 (279)
T cd07947 214 ----------------FYKA---VANAVAAWLYGASW--VNCTLLGIGERTGNCPLEAMVIEYAQL 258 (279)
T ss_pred ----------------CChH---HHHHHHHHHhCCCE--EEEecccccccccchhHHHHHHHHHHh
Confidence 2333 66778899999997 5664 888999999988877666654
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=89.58 E-value=2.7 Score=39.34 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=62.6
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
.+..-+.|.++|-|-|+. +..+.|+.+++.|+.|.-..+.... +-+..+.+..+ +..+
T Consensus 95 ~~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~i~ViaRtd~~pq-~~~~~gg~~~~--------~~~~------- 152 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGE------WHIETLQMLTAAAVPVIAHTGLTPQ-SVNTSGGDEGQ--------YRGD------- 152 (240)
T ss_pred HHHHHHcCCcEEEEcCcH------HHHHHHHHHHHcCCeEEEEeCCchh-hhhccCCceee--------ccCH-------
Confidence 344445999999999984 4566788889988776655554110 00000111000 0000
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCC
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
-+.+++ |++++...+||||.|.+|+- ..+++.+|.+.++.
T Consensus 153 --~~~~~a---i~Ra~ay~~AGAd~i~~e~~---------~~e~~~~i~~~~~~ 192 (240)
T cd06556 153 --EAGEQL---IADALAYAPAGADLIVMECV---------PVELAKQITEALAI 192 (240)
T ss_pred --HHHHHH---HHHHHHHHHcCCCEEEEcCC---------CHHHHHHHHHhCCC
Confidence 125677 99999999999999999963 46778888877663
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=89.54 E-value=4 Score=35.35 Aligned_cols=98 Identities=17% Similarity=0.374 Sum_probs=68.3
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcC-CCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG-FDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lG-F~~ 117 (299)
.+.++.++++.+..++..+-|.+|-..+.|+ +.+.++.+++.|+.++.-| .| ..+++++...+.| .+.
T Consensus 48 ~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~--l~~li~~~~~~g~~v~i~T-------Ng--~~~~~l~~l~~~g~~~~ 116 (191)
T TIGR02495 48 EVEFLLEFLRSRQGLIDGVVITGGEPTLQAG--LPDFLRKVRELGFEVKLDT-------NG--SNPRVLEELLEEGLVDY 116 (191)
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCcccCcHh--HHHHHHHHHHCCCeEEEEe-------CC--CCHHHHHHHHhcCCCcE
Confidence 5668888988888889999999999988773 8999999999998554311 11 1234556666678 488
Q ss_pred EEecCCcc-c----C-----Ch-hHHHHHHHHHHHcCCccc
Q 022296 118 IELNVGSL-E----I-----PE-ETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 118 IEISdGti-~----i-----~~-~~r~~lI~~~~~~G~~v~ 147 (299)
|-+|-... + + .. +.-.+.|+.+++.|+.+.
T Consensus 117 v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~ 157 (191)
T TIGR02495 117 VAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFE 157 (191)
T ss_pred EEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEE
Confidence 87754421 1 1 11 245678888989887643
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=89.42 E-value=4.6 Score=38.05 Aligned_cols=136 Identities=16% Similarity=0.184 Sum_probs=79.9
Q ss_pred cccccEEEeeCcccccCChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Cc
Q 022296 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GS 124 (299)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~Gt---lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gt 124 (299)
.+++|++|+|-++..=++ .|+ .+-+.|. .+++|. +-| ++.-++.+++-|-+-|=+-. |+
T Consensus 106 ~~~~d~lkI~s~~~~n~~--LL~----~~a~~gkPVilk~G~~~t~~e---------~~~Ave~i~~~Gn~~i~l~~rG~ 170 (260)
T TIGR01361 106 AEYADILQIGARNMQNFE--LLK----EVGKQGKPVLLKRGMGNTIEE---------WLYAAEYILSSGNGNVILCERGI 170 (260)
T ss_pred HhhCCEEEECcccccCHH--HHH----HHhcCCCcEEEeCCCCCCHHH---------HHHHHHHHHHcCCCcEEEEECCC
Confidence 377999999977544333 333 3334565 455673 322 22335556677775444422 45
Q ss_pred ccC-C---hhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 125 LEI-P---EETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 125 i~i-~---~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
-+- | .+--++.|..+++. ++. +|.- +.... ++ -+.. ..
T Consensus 171 s~y~~~~~~~~dl~~i~~lk~~~~~p----V~~d-s~Hs~---G~--------------------------r~~~---~~ 213 (260)
T TIGR01361 171 RTFEKATRNTLDLSAVPVLKKETHLP----IIVD-PSHAA---GR--------------------------RDLV---IP 213 (260)
T ss_pred CCCCCCCcCCcCHHHHHHHHHhhCCC----EEEc-CCCCC---Cc--------------------------cchH---HH
Confidence 333 2 23445677777763 322 4441 11111 11 1222 44
Q ss_pred HHHHHHHccCcEEEEecc-----ccccCCCcccHHHHHHHHhcc
Q 022296 200 RAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i~~ii~~l 238 (299)
.+...+.+||+-+|||-- .+.|..-.+..+.+.++++.+
T Consensus 214 ~~~aAva~Ga~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 214 LAKAAIAAGADGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKEL 257 (260)
T ss_pred HHHHHHHcCCCEEEEEeCCCccccCCcchhcCCHHHHHHHHHHH
Confidence 567799999999999983 678888999999999998653
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.34 E-value=4.9 Score=39.51 Aligned_cols=134 Identities=19% Similarity=0.285 Sum_probs=98.6
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
.+.++..+...+..+ |+=+|+.+|=-.|=+ .|.+.|+..++++ +.|++++.|.-.+..+.+.+|+.|++.
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRlTGGEPllR~--dl~eIi~~l~~~~-------~~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRLTGGEPLLRK--DLDEIIARLARLG-------IRDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEEeCCCchhhc--CHHHHHHHHhhcc-------cceEEEecchhhHHHHHHHHHHcCCcE
Confidence 567888888888888 889999999998855 8999999999983 344555544345778889999999999
Q ss_pred EEecCCccc------CC----hhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 118 IELNVGSLE------IP----EETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 118 IEISdGti~------i~----~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
|-||-.|++ |. .+.=.+=|+.|.+.||. ||=..-+.-+ +
T Consensus 115 VNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kg---v--------------------------- 164 (322)
T COG2896 115 VNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKG---V--------------------------- 164 (322)
T ss_pred EEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecC---C---------------------------
Confidence 999988763 22 13334567899999997 7766666321 1
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
..+++ ...++-.-+-|+..=+||=.
T Consensus 165 ---Nd~ei---~~l~e~~~~~~~~lrfIE~m 189 (322)
T COG2896 165 ---NDDEI---EDLLEFAKERGAQLRFIELM 189 (322)
T ss_pred ---CHHHH---HHHHHHHhhcCCceEEEEEe
Confidence 12333 44467777889999999976
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.9 Score=42.95 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=101.2
Q ss_pred eEecCCCCCCcchhHHHHHHHhhccc----ccEEEeeCccc-c-------cCChhHHHHHHHHHHhCCceecC-C-cHHH
Q 022296 28 EMRSPHYTLSSSHNVLEDIFESMGQF----VDGLKFSGGSH-S-------LMPKPFIEEVVKRAHQHDVYVST-G-DWAE 93 (299)
Q Consensus 28 ~V~DkGl~~~~g~~~l~DlLe~ag~y----ID~lKfg~GTs-~-------l~p~~~l~eKI~l~~~~gV~v~~-G-tlfE 93 (299)
-+||=..|+....=.++|++..+..+ ++.+=+++|++ - -.|.+.|+..-+..++--+..-. | .++
T Consensus 19 TlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~v- 97 (468)
T PRK12581 19 VLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLL- 97 (468)
T ss_pred CccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeecccccc-
Confidence 45777777441222456666554322 23444445542 2 24545454444444332221111 3 111
Q ss_pred HHHHhCC-chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022296 94 HLIRNGP-SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (299)
Q Consensus 94 ~a~~qg~-~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~ 172 (299)
.+..-| +-++.|++.+.+.|+|.+-|-|..-+++. -...|+.+++.|..+..-+... .+
T Consensus 98 -gy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n--~~~ai~~ak~~G~~~~~~i~yt--~s--------------- 157 (468)
T PRK12581 98 -GYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRN--IQQALRAVKKTGKEAQLCIAYT--TS--------------- 157 (468)
T ss_pred -CccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHH--HHHHHHHHHHcCCEEEEEEEEE--eC---------------
Confidence 111111 36889999999999999999997775544 4569999999998765323321 11
Q ss_pred CCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 173 RAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
| + -+++-+ ++.++.-.++||+.|- |.|..|-..+..+.++++.+
T Consensus 158 p-----~---------~t~~y~---~~~a~~l~~~Gad~I~-----IkDtaG~l~P~~v~~Lv~al 201 (468)
T PRK12581 158 P-----V---------HTLNYY---LSLVKELVEMGADSIC-----IKDMAGILTPKAAKELVSGI 201 (468)
T ss_pred C-----c---------CcHHHH---HHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 1 0 125667 8888999999999775 67888888888888887665
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=89.12 E-value=3 Score=43.85 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-++++++.+.+.|+|.|-|.+..-++ +.-.+.|+.++++|+.|. +.+-... +| +
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p--~----- 145 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP--RNLQAAIQAAKKHGAHAQ--GTISYTT---------------SP--V----- 145 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CC--C-----
Confidence 48889999999999999999777665 456678999999998653 3431110 11 1
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ ++.+++..++||+.| .|+|..|-.....+.++++.+
T Consensus 146 -------~~~~~~---~~~~~~~~~~Gad~I-----~i~Dt~G~~~P~~v~~lv~~l 187 (582)
T TIGR01108 146 -------HTLETY---LDLAEELLEMGVDSI-----CIKDMAGILTPKAAYELVSAL 187 (582)
T ss_pred -------CCHHHH---HHHHHHHHHcCCCEE-----EECCCCCCcCHHHHHHHHHHH
Confidence 126777 888899999999976 378899999988888888655
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >smart00518 AP2Ec AP endonuclease family 2 | Back alignment and domain information |
|---|
Probab=89.07 E-value=6.6 Score=35.81 Aligned_cols=141 Identities=16% Similarity=0.255 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcccceeeee-cCCCCCCCcccccccccccCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKAKPKFAVM-FNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~G~~v~~E~gvK-~~~sevg~~~d~~~~~~~~~~ 174 (299)
.+.+.++++.++||+.||+.-+.. .++.+...++.+.+++.|+++.. .+.- .+.+ + .| |.
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~-h~p~~~nl~---s-~d--------~~ 77 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV-HAPYLINLA---S-PD--------KE 77 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE-ECCceecCC---C-CC--------HH
Confidence 467889999999999999986655 46778888888889999987431 1110 0000 0 01 00
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHH-------HHHHHHhc-cCCCceEEe
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRAD-------IIAKVIGR-LGLEKTMFE 246 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d-------~i~~ii~~-l~~eklifE 246 (299)
.+ ..+++.+ .+.++.+-+.||..|.+.+ |-+.. .-+++ .+.++++. -| -+|.+|
T Consensus 78 ~r-----------~~~~~~l---~~~i~~A~~lGa~~vv~h~-g~~~~--~~~e~~~~~~~~~l~~l~~~~~g-v~l~lE 139 (273)
T smart00518 78 KV-----------EKSIERL---IDEIKRCEELGIKALVFHP-GSYLK--QSKEEALNRIIESLNEVIDETKG-VVILLE 139 (273)
T ss_pred HH-----------HHHHHHH---HHHHHHHHHcCCCEEEEcc-ccccC--CCHHHHHHHHHHHHHHHHhccCC-cEEEEe
Confidence 01 0124445 4445555567999998855 22211 11223 23334331 12 246777
Q ss_pred cC---------CchhHHHHHHHhC--CCcccccCCCCc
Q 022296 247 AT---------NPRTSEWFIRRYG--PKVNLFVDHSQV 273 (299)
Q Consensus 247 AP---------~k~qQ~~fI~~fG--~~VNLgI~~~eV 273 (299)
.- ...+-..+++..+ |+|.+.+|..+.
T Consensus 140 n~~~~~~~~~~~~~~~~~ll~~v~~~~~~g~~lD~gH~ 177 (273)
T smart00518 140 TTAGKGSQIGSTFEDLKEIIDLIKELDRIGVCIDTCHI 177 (273)
T ss_pred ccCCCCCccCCCHHHHHHHHHhcCCCCCeEEEEEccch
Confidence 51 3345778888887 467665555554
|
These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites |
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.06 E-value=1.8 Score=41.77 Aligned_cols=118 Identities=25% Similarity=0.407 Sum_probs=82.6
Q ss_pred HHHHHHHHHhCCceec------CCc-HHH-HHHHhCCchHHHHHHHHHHcCC-CEEEecCCcccCChhHHHHHHHHHHHc
Q 022296 72 IEEVVKRAHQHDVYVS------TGD-WAE-HLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSLEIPEETLLRYVRLVKSA 142 (299)
Q Consensus 72 l~eKI~l~~~~gV~v~------~Gt-lfE-~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (299)
.++-++.+++.++.+. ||. +|| +|++-|.. .-+++|. |+|=|.|.-+.+-- ...+.|+++++.
T Consensus 113 T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV~~GGG-------~nHR~gLsDavliKDNHia~~g-~i~~Av~~aR~~ 184 (280)
T COG0157 113 TARMVEALRGTNVRIADTRKTTPGLRLLEKYAVRAGGG-------DNHRFGLSDAVLIKDNHIAAAG-SITEAVRRARAA 184 (280)
T ss_pred HHHHHHHhhccCcEEEeccCCCccHHHHHHHHHHhcCC-------ccccCCCcceEEehhhHHHHhc-cHHHHHHHHHHh
Confidence 3567788888887543 573 666 44444411 1244554 68889998888777 556899999885
Q ss_pred -CCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc
Q 022296 143 -GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK 221 (299)
Q Consensus 143 -G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d 221 (299)
++.++=||-+. . .+++++.++||||.||.
T Consensus 185 ~~~~~kIEVEve----------------------------------s---------le~~~eAl~agaDiImL------- 214 (280)
T COG0157 185 APFTKKIEVEVE----------------------------------S---------LEEAEEALEAGADIIML------- 214 (280)
T ss_pred CCCCceEEEEcC----------------------------------C---------HHHHHHHHHcCCCEEEe-------
Confidence 55544444440 1 56669999999999999
Q ss_pred CCCcccHHHHHHHHhccC-CCceEEecCC
Q 022296 222 HADSLRADIIAKVIGRLG-LEKTMFEATN 249 (299)
Q Consensus 222 ~~G~~r~d~i~~ii~~l~-~eklifEAP~ 249 (299)
.|+..+.+.+.++.++ ..+++.||.-
T Consensus 215 --DNm~~e~~~~av~~l~~~~~~~lEaSG 241 (280)
T COG0157 215 --DNMSPEELKEAVKLLGLAGRALLEASG 241 (280)
T ss_pred --cCCCHHHHHHHHHHhccCCceEEEEeC
Confidence 4778888888887766 5678999873
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.02 E-value=3.1 Score=41.27 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh---h-HHHHHHHHHHHcCCc
Q 022296 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE---E-TLLRYVRLVKSAGLK 145 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~---~-~r~~lI~~~~~~G~~ 145 (299)
+.+.+.|+-.++++|.+..+. ++....++.+.+.+.|.|.|.|+-.|.+-.+ . ++..+++..++.+..
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~--------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSL--------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC
Confidence 445555566666666554432 3346789999999999999999766554221 1 456677776765433
|
|
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=88.99 E-value=12 Score=36.81 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=69.6
Q ss_pred chhHHHHHHHhhc-ccccEEEeeCcccccCChhHHHHHHHHHHhC-Cce---ecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022296 39 SHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY---VST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 39 g~~~l~DlLe~ag-~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~---v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
...++.++++.+. .-+..+.|.+|--.+.+ .+.+.++.+++. |+. +.| |++ +++.++.+++
T Consensus 91 s~eei~~~i~~~~~~Gv~~I~~tGGEPllr~--dl~eli~~l~~~~gi~~i~itTNG~l-----------L~~~~~~L~~ 157 (373)
T PLN02951 91 SQDEIVRLAGLFVAAGVDKIRLTGGEPTLRK--DIEDICLQLSSLKGLKTLAMTTNGIT-----------LSRKLPRLKE 157 (373)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcchh--hHHHHHHHHHhcCCCceEEEeeCcch-----------HHHHHHHHHh
Confidence 4556766665432 34788999999988776 588999999986 653 344 544 2334567888
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeee
Q 022296 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAV 152 (299)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~gv 152 (299)
.|++.|-||=.+++ -+.+..++.|+.+++.|+. |+-.+.+
T Consensus 158 aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv 208 (373)
T PLN02951 158 AGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVV 208 (373)
T ss_pred CCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999999966541 1236677888999999984 4444443
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=3.5 Score=42.30 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-++.|++.+.+.|++.|-|.+..-++ +.-.+.|+.+++.|+.|. ..+-... + | +
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---~------------p--~----- 149 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALNDI--RNLEKSIEVAKKHGAHVQ--GAISYTV---S------------P--V----- 149 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCCHH--HHHHHHHHHHHHCCCEEE--EEEEecc---C------------C--C-----
Confidence 68899999999999999999877775 345568999999998654 3331100 1 1 0
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ ++.+++..++||+.|- |.|..|-.....+.+++..+
T Consensus 150 -------~t~e~~---~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~Lv~~l 191 (467)
T PRK14041 150 -------HTLEYY---LEFARELVDMGVDSIC-----IKDMAGLLTPKRAYELVKAL 191 (467)
T ss_pred -------CCHHHH---HHHHHHHHHcCCCEEE-----ECCccCCcCHHHHHHHHHHH
Confidence 125677 8888999999999764 67888888887777777554
|
|
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=88.85 E-value=3.1 Score=43.21 Aligned_cols=105 Identities=24% Similarity=0.332 Sum_probs=72.1
Q ss_pred HHHhhcccccEE--EeeCcccccCChhHHHHHHHHHHhCC-ceecC--C-cHHHHHHH---------------hCCch-H
Q 022296 46 IFESMGQFVDGL--KFSGGSHSLMPKPFIEEVVKRAHQHD-VYVST--G-DWAEHLIR---------------NGPSA-F 103 (299)
Q Consensus 46 lLe~ag~yID~l--Kfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~--G-tlfE~a~~---------------qg~~~-~ 103 (299)
-|+..|+.+|=+ =|.+||+.-+|.+..+.-++.++++= -+... + .-+|-+.. -.|+. -
T Consensus 126 ~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~ 205 (522)
T TIGR01211 126 QLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCR 205 (522)
T ss_pred HHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCC
Confidence 355578887743 48999999999999999999998861 11111 1 00222211 22333 4
Q ss_pred HHHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCccccee
Q 022296 104 KEYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
++.++.++++|++.||+--=|. .-+.++-.+.++.+++.||++...+
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~L 262 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHI 262 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 7899999999999999866555 3455666788999999999755443
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=88.83 E-value=3.4 Score=40.34 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhccc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (299)
+-++.+.+.|.+.|-|....-+. +.-.+.|+.+++.|++|. +..... +
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~--~~~~~~i~~ak~~G~~v~--~~l~~a----~------------------------ 139 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA--DVSEQHIGLARELGMDTV--GFLMMS----H------------------------ 139 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH--HHHHHHHHHHHHCCCeEE--EEEEec----c------------------------
Confidence 34788999999999998755544 345789999999998753 333211 0
Q ss_pred CCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 185 ~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ +++++...++||+.| .|.|..|...++.+.+++..+
T Consensus 140 ---~~~~e~l---~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 182 (337)
T PRK08195 140 ---MAPPEKL---AEQAKLMESYGAQCV-----YVVDSAGALLPEDVRDRVRAL 182 (337)
T ss_pred ---CCCHHHH---HHHHHHHHhCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 0236788 999999999999976 478999999999998888644
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=88.78 E-value=3.4 Score=36.94 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=18.1
Q ss_pred HHHHHHHHHccCcEEEEeccccccCC
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
.+.+++.+++||+-|+|=+ .|++..
T Consensus 184 ~edi~~~~~~Ga~gvivGs-ai~~~~ 208 (217)
T cd00331 184 PEDVKRLAEAGADAVLIGE-SLMRAP 208 (217)
T ss_pred HHHHHHHHHcCCCEEEECH-HHcCCC
Confidence 3455888999999999844 366544
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.75 E-value=3.8 Score=38.07 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhccc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (299)
+.++.+.+.|.+.|-|..-.-++ +.-.+.|+.+++.|+.|.. ... +.+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~--~~~~~~i~~ak~~G~~v~~--~~~----~~~------------------------ 136 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA--DVSEQHIGAARKLGMDVVG--FLM----MSH------------------------ 136 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH--HHHHHHHHHHHHCCCeEEE--EEE----ecc------------------------
Confidence 55788899999999986543333 3556799999999986433 331 100
Q ss_pred CCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 185 ~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.+++..++||+.|- |.|..|...++.+.++++.+
T Consensus 137 ---~~~~~~~---~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 137 ---MASPEEL---AEQAKLMESYGADCVY-----VTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred ---CCCHHHH---HHHHHHHHHcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 0226777 8888889999999764 78899999999988888654
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=88.74 E-value=3.5 Score=36.89 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=46.4
Q ss_pred HHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCC-ceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEecCCc
Q 022296 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIELNVGS 124 (299)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~GtlfE~a~~qg~-~~~~~yl~~~k~lGF~~IEISdGt 124 (299)
+..+| ++.++ ++-.+ +.+.+.+.++..+++- .++..+.++ +.+ ...+++++.|++.|.+.|.++++
T Consensus 22 ~~~~G-~ig~i----~~~~~-~~~~~~~~~~~i~~~~~~~~~v~~i~-----~~~~~~~~~~~~~~~~~g~d~v~l~~~- 89 (236)
T cd04730 22 VSNAG-GLGFI----GAGYL-TPEALRAEIRKIRALTDKPFGVNLLV-----PSSNPDFEALLEVALEEGVPVVSFSFG- 89 (236)
T ss_pred HHhCC-Ccccc----CCCCC-CHHHHHHHHHHHHHhcCCCeEEeEec-----CCCCcCHHHHHHHHHhCCCCEEEEcCC-
Confidence 33344 55665 22233 4455666666666542 221111111 111 26888999999999999999988
Q ss_pred ccCChhHHHHHHHHHHHcCCc
Q 022296 125 LEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 125 i~i~~~~r~~lI~~~~~~G~~ 145 (299)
.+ .++++.+++.++.
T Consensus 90 --~~----~~~~~~~~~~~i~ 104 (236)
T cd04730 90 --PP----AEVVERLKAAGIK 104 (236)
T ss_pred --CC----HHHHHHHHHcCCE
Confidence 22 3466677765544
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=88.72 E-value=1.4 Score=40.48 Aligned_cols=144 Identities=15% Similarity=0.258 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~ 174 (299)
.+++-++.++++||+.||++-+.. ..+.++..++.+.+++. |+.+.. .+.- .. +. ..|.
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~-~~---~~---------~~~~ 76 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSV-HAPY-LI---NL---------ASPD 76 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEE-EcCc-ee---cc---------CCCC
Confidence 788999999999999999975433 12457777777787787 444221 1110 00 00 0010
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc--CCCcccH---HHHHHHHh---ccCCCceEEe
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK--HADSLRA---DIIAKVIG---RLGLEKTMFE 246 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d--~~G~~r~---d~i~~ii~---~l~~eklifE 246 (299)
+- . .+-.++.+ .+.++.+-+.||.+|++-.- -+. ....... +.+.++++ ..|+ +|-+|
T Consensus 77 ~~--~-------r~~~~~~~---~~~i~~A~~lG~~~v~~~~g-~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi-~l~lE 142 (279)
T cd00019 77 KE--K-------REKSIERL---KDEIERCEELGIRLLVFHPG-SYLGQSKEEGLKRVIEALNELIDKAETKGV-VIALE 142 (279)
T ss_pred HH--H-------HHHHHHHH---HHHHHHHHHcCCCEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHhccCCCC-EEEEe
Confidence 00 0 01124455 55556666779999887432 111 1111112 33444443 2333 46666
Q ss_pred c---------CCchhHHHHHHHhC--CCcccccCCCCc
Q 022296 247 A---------TNPRTSEWFIRRYG--PKVNLFVDHSQV 273 (299)
Q Consensus 247 A---------P~k~qQ~~fI~~fG--~~VNLgI~~~eV 273 (299)
- +...+-..+|+..| |+|.+-.|+.+.
T Consensus 143 n~~~~~~~~~~t~~~~~~li~~v~~~~~~g~~lD~~h~ 180 (279)
T cd00019 143 TMAGQGNEIGSSFEELKEIIDLIKEKPRVGVCIDTCHI 180 (279)
T ss_pred CCCCCCCCCCCCHHHHHHHHHhcCCCCCeEEEEEhhhH
Confidence 4 22344567999997 777665555554
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=88.62 E-value=21 Score=33.34 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=101.9
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccC----ChhHHHHHHHHHHhC--Cceec--CC-cHH
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM----PKPFIEEVVKRAHQH--DVYVS--TG-DWA 92 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~----p~~~l~eKI~l~~~~--gV~v~--~G-tlf 92 (299)
+..|++.++.+|. .+...+..++.+..|-. +..+.|-+--. +.+.+.+..+++..+ .|.-- .| .++
T Consensus 29 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~ 103 (258)
T PRK11449 29 AQAGVGKIIVPAT----EAENFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLF 103 (258)
T ss_pred HHCCCCEEEEeeC----CHHHHHHHHHHHHhCCC-EEEEEeeCcCccccCCHHHHHHHHHHHHhCCCCEEEEEecccCCC
Confidence 3669999999998 56688888998888864 66777776533 233455555455433 22111 13 222
Q ss_pred --H--HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022296 93 --E--HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (299)
Q Consensus 93 --E--~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~ 168 (299)
+ ...++. -|++.++.|++++...+==+-+ ..+ ++++.+++.+... -++=...+ +
T Consensus 104 ~~~~~~~~Q~~--vf~~ql~lA~~~~~Pv~iH~r~----a~~---~~~~il~~~~~~~---~~i~H~fs-----G----- 161 (258)
T PRK11449 104 GDDPQFERQQW--LLDEQLKLAKRYDLPVILHSRR----THD---KLAMHLKRHDLPR---TGVVHGFS-----G----- 161 (258)
T ss_pred CCCCCHHHHHH--HHHHHHHHHHHhCCCEEEEecC----ccH---HHHHHHHhcCCCC---CeEEEcCC-----C-----
Confidence 1 122333 6999999999999998755554 223 4555555544211 12321111 0
Q ss_pred ccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccc-cccCCCcccHHHHHHHHhccCCCceEEec
Q 022296 169 AYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDD-VCKHADSLRADIIAKVIGRLGLEKTMFEA 247 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEarg-i~d~~G~~r~d~i~~ii~~l~~eklifEA 247 (299)
+ .+++++.++.|.+. =+ -| ++.+ +.+.+.++++.+|+++|++|.
T Consensus 162 -------------------~---------~~~a~~~l~~G~~i-S~--~g~it~~----~~~~~~~~~~~ipldriL~ET 206 (258)
T PRK11449 162 -------------------S---------LQQAERFVQLGYKI-GV--GGTITYP----RASKTRDVIAKLPLASLLLET 206 (258)
T ss_pred -------------------C---------HHHHHHHHHCCCEE-Ee--Ccccccc----CcHHHHHHHHhCChhhEEEec
Confidence 1 45569999999763 11 12 2222 335578899999999999998
Q ss_pred CCc
Q 022296 248 TNP 250 (299)
Q Consensus 248 P~k 250 (299)
.-|
T Consensus 207 D~P 209 (258)
T PRK11449 207 DAP 209 (258)
T ss_pred CCC
Confidence 766
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=88.52 E-value=2.2 Score=38.19 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccch
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~-~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~ 180 (299)
..-++.+..++.|++.+-|.|=+-... ...-..+|+++++. +++. . . .++.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~-------~~~p--v-~--~~Gg---------------- 81 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA-------VGIP--V-Q--VGGG---------------- 81 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh-------cCCC--E-E--EeCC----------------
Confidence 455667777789999999997654332 44446788888773 2211 0 0 0000
Q ss_pred hcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEe
Q 022296 181 LFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 246 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifE 246 (299)
+ +..+++++.+++||+.|++=.. ..+ ..+.+.+++++++.+++++=
T Consensus 82 -----I---------~~~e~~~~~~~~Gad~vvigs~-~l~-----dp~~~~~i~~~~g~~~i~~s 127 (234)
T cd04732 82 -----I---------RSLEDIERLLDLGVSRVIIGTA-AVK-----NPELVKELLKEYGGERIVVG 127 (234)
T ss_pred -----c---------CCHHHHHHHHHcCCCEEEECch-HHh-----ChHHHHHHHHHcCCceEEEE
Confidence 1 1156668889999999998443 332 26678888888777666654
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.51 E-value=3.1 Score=38.96 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSA 142 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~~~ 142 (299)
.+.+..+.+++.|||+|||+=++- --+.+.-.++++.+++.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~ 152 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA 152 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc
Confidence 556667778888999999975542 23445556788888875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.47 E-value=3.5 Score=38.16 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=89.1
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
...+-+.|..+| ||.+=+|+-+. .+. =.+.++.+.+. ++.+. ++.+. -.+-++.+.+.|++.
T Consensus 22 k~~i~~~L~~~G--v~~iE~g~p~~---~~~-~~e~~~~l~~~~~~~~~~-------~~~r~---~~~~v~~a~~~g~~~ 85 (259)
T cd07939 22 KLAIARALDEAG--VDEIEVGIPAM---GEE-EREAIRAIVALGLPARLI-------VWCRA---VKEDIEAALRCGVTA 85 (259)
T ss_pred HHHHHHHHHHcC--CCEEEEecCCC---CHH-HHHHHHHHHhcCCCCEEE-------EeccC---CHHHHHHHHhCCcCE
Confidence 345566777787 88888886543 211 12344444432 22211 11221 134467788999999
Q ss_pred EEecCCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccC
Q 022296 118 IELNVGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185 (299)
Q Consensus 118 IEISdGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (299)
|-++...-+.. . +.-.+.|+.+++.|+.|. |+..+. +
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~----~------------------------- 134 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGAEDA----S------------------------- 134 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--EeeccC----C-------------------------
Confidence 99976443332 1 334578999999998643 444110 0
Q ss_pred CCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 186 ~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ .+.+++..++|++.| .|+|..|...++.+.+++..+
T Consensus 135 --~~~~~~~---~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 135 --RADPDFL---IEFAEVAQEAGADRL-----RFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred --CCCHHHH---HHHHHHHHHCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 0126777 888899999999976 478999999999998888643
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=88.37 E-value=5.3 Score=42.52 Aligned_cols=141 Identities=12% Similarity=0.114 Sum_probs=98.8
Q ss_pred EEEeeCcccccCChh-----------HHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 022296 56 GLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (299)
Q Consensus 56 ~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (299)
.+-+-..||-++-+. .+++-+++++++|. .|..+ .|.+..-+++.+.++++.+.+.|.+.|=|.|-
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs--~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DT 262 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS--PEDAGRSDPEFLYRILGEVIKAGATTLNIPDT 262 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe--cccCCCCCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 355555666554322 36677889999987 35444 34455556667888999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHH
Q 022296 124 SLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRA 201 (299)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~G~~v--~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 201 (299)
.--+.+++-.++|+.+++. +.. ...+++.+. .| .... +...
T Consensus 263 vG~~~P~~v~~li~~l~~~-~~~~~~v~i~vH~H-------ND--------------------------~GlA---vANs 305 (632)
T PLN02321 263 VGYTLPSEFGQLIADIKAN-TPGIENVIISTHCQ-------ND--------------------------LGLS---TANT 305 (632)
T ss_pred ccCCCHHHHHHHHHHHHHh-cCCCCCceEEEEeC-------CC--------------------------CCHH---HHHH
Confidence 9999999999999999874 111 112444321 11 2334 5666
Q ss_pred HHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhc
Q 022296 202 ERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 202 ~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~ 237 (299)
...++|||+.| |+- ||=+..||...+.+-..+..
T Consensus 306 laAv~AGA~~V--d~TinGlGERaGNa~LEevv~~L~~ 341 (632)
T PLN02321 306 LAGAHAGARQV--EVTINGIGERAGNASLEEVVMAIKC 341 (632)
T ss_pred HHHHHhCCCEE--EEecccccccccCccHHHHHHHHHh
Confidence 77899999984 775 88889999998877766653
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.36 E-value=8 Score=36.41 Aligned_cols=143 Identities=12% Similarity=0.149 Sum_probs=90.6
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (299)
..+-+.|..+| ||.+=+|+..+. | ...+-++...+.+.....-+|. . .-.+.++.+.+.|.+.|.+
T Consensus 25 ~~i~~~L~~~G--v~~IEvG~P~~~--~--~~~~~~~~l~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 25 IEIAKALDAFG--VDYIELTSPAAS--P--QSRADCEAIAKLGLKAKILTHI-----R---CHMDDARIAVETGVDGVDL 90 (262)
T ss_pred HHHHHHHHHcC--CCEEEEECCCCC--H--HHHHHHHHHHhCCCCCcEEEEe-----c---CCHHHHHHHHHcCcCEEEE
Confidence 45667788888 999999985443 3 2344455554444321112232 2 2234688888899999998
Q ss_pred cCCc--------ccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 121 NVGS--------LEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 121 SdGt--------i~i~~~~----r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.... ...+.++ -.++|+.+++.|++| .++..+...
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v--~~~~eda~r------------------------------- 137 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEV--RFSSEDSFR------------------------------- 137 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEEEeeCC-------------------------------
Confidence 5432 2333333 456678999998763 445421110
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ .+.+++..++||+.| .|.|..|-..+..+.++++.+
T Consensus 138 ~~~~~l---~~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 138 SDLVDL---LRVYRAVDKLGVNRV-----GIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred CCHHHH---HHHHHHHHHcCCCEE-----EECCcCCCCCHHHHHHHHHHH
Confidence 115566 777788889999965 478889999999888888754
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=88.23 E-value=1 Score=42.60 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC----------hhHHHHHHHHHHH
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIP----------EETLLRYVRLVKS 141 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~----------~~~r~~lI~~~~~ 141 (299)
...++++.+.+.|.|.|+||.|+..-+ ......+++.+++
T Consensus 229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 278 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKK 278 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHH
Confidence 456678888899999999999986432 2344567777776
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=88.18 E-value=15 Score=36.21 Aligned_cols=142 Identities=19% Similarity=0.293 Sum_probs=90.2
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
.+-+.|..+| ||.+=+||=.+ .++ =.+.++.+.+.+.....-+| .+ ...+-++.+.+.|++.|.|+
T Consensus 30 ~ia~~L~~~G--V~~IE~G~p~~---~~~-~~e~i~~i~~~~~~~~i~~~-----~r---~~~~di~~a~~~g~~~i~i~ 95 (378)
T PRK11858 30 AIARMLDEIG--VDQIEAGFPAV---SED-EKEAIKAIAKLGLNASILAL-----NR---AVKSDIDASIDCGVDAVHIF 95 (378)
T ss_pred HHHHHHHHhC--CCEEEEeCCCc---ChH-HHHHHHHHHhcCCCeEEEEE-----cc---cCHHHHHHHHhCCcCEEEEE
Confidence 4556677777 78888886443 222 23445555555554322234 11 12445788888999999998
Q ss_pred CCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 122 VGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 122 dGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
..+-++ +. +.-.+.|+.+++.|+.| .|+-. +.+ ..
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v--~~~~e----d~~---------------------------r~ 142 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYV--SFSAE----DAS---------------------------RT 142 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEec----cCC---------------------------CC
Confidence 765443 22 33445888999999874 33321 100 01
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+++.+ ++.++...++||+.|. |+|..|-..+..+.+++..+
T Consensus 143 ~~~~l---~~~~~~~~~~Ga~~I~-----l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 143 DLDFL---IEFAKAAEEAGADRVR-----FCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred CHHHH---HHHHHHHHhCCCCEEE-----EeccCCCCCHHHHHHHHHHH
Confidence 26777 8888899999999764 67888888888888777654
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.94 E-value=3.1 Score=38.68 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~ 173 (299)
.+.+..+.+.+.|+|+|||+-++-.. ..+.-.++++.+++. . -+| +.+|-...
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~-~~p-v~vKl~~~---------------- 172 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-V-DIP-LLVKLSPY---------------- 172 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-c-CCC-EEEEeCCC----------------
Confidence 55666778888899999998775432 234556788888873 0 112 55552210
Q ss_pred CCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 174 APRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
.+.+++ ++.++...++|||.|.+-.+
T Consensus 173 ---------------~~~~~~---~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 173 ---------------FDLEDI---VELAKAAERAGADGLTAINT 198 (289)
T ss_pred ---------------CCHHHH---HHHHHHHHHcCCCEEEEEcc
Confidence 113455 77788889999999999765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.59 E-value=6.5 Score=36.02 Aligned_cols=123 Identities=12% Similarity=0.107 Sum_probs=77.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCccc---------------ccCChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCc
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSH---------------SLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPS 101 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs---------------~l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~ 101 (299)
+++.++-+-+...+| +-+.+|-||- .++++..-.+.++.|+++||.+.|| |.-|+.-.
T Consensus 39 tp~a~~~I~~l~~~~-~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A---- 113 (201)
T PRK06015 39 TPAALDAIRAVAAEV-EEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDVPLLPGAATPSEVMAL---- 113 (201)
T ss_pred CccHHHHHHHHHHHC-CCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHH----
Confidence 444555444444444 4466777662 2344456678899999999999998 78888754
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.++|++.|-+==...-= -..+|+.++. ++|.+-.. -+| +
T Consensus 114 ---------~~~Ga~~vK~FPa~~~G----G~~yikal~~----plp~~~l~----ptG--G------------------ 152 (201)
T PRK06015 114 ---------REEGYTVLKFFPAEQAG----GAAFLKALSS----PLAGTFFC----PTG--G------------------ 152 (201)
T ss_pred ---------HHCCCCEEEECCchhhC----CHHHHHHHHh----hCCCCcEE----ecC--C------------------
Confidence 46899999875422110 1367777766 55543332 111 1
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccC
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH 222 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~ 222 (299)
++ .+.+...|+||+..+.. +.-++++
T Consensus 153 -------V~-------~~n~~~~l~ag~~~~~g-gs~l~~~ 178 (201)
T PRK06015 153 -------IS-------LKNARDYLSLPNVVCVG-GSWVAPK 178 (201)
T ss_pred -------CC-------HHHHHHHHhCCCeEEEE-chhhCCc
Confidence 11 34559999999998887 7777754
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=87.50 E-value=5.6 Score=41.18 Aligned_cols=153 Identities=13% Similarity=0.169 Sum_probs=90.6
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEe
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~-~~~~~yl~~~k~lGF~~IEI 120 (299)
.+-+.|..+| ||.+=.||..+.-...+.+++..++-- .+..++. |. .+...+- ...+.-++.+.+.|.+.|-+
T Consensus 31 ~ia~~L~~~G--vd~IEvG~p~as~~d~~~~~~i~~~~l-~~~~i~~--~~-~~~~~~i~~~~d~~~e~~~~~g~~~i~i 104 (524)
T PRK12344 31 RIARKLDELG--VDYIEGGWPGSNPKDTEFFKRAKELKL-KHAKLAA--FG-STRRAGVSAEEDPNLQALLDAGTPVVTI 104 (524)
T ss_pred HHHHHHHHcC--CCEEEEcCCcCChhHHHHHHHHHHhCC-CCcEEEE--Ee-eccccCCCcccHHHHHHHHhCCCCEEEE
Confidence 4556677788 899999996554333333333333110 1233322 11 1111110 01245567888999999999
Q ss_pred cCCcccCChh------------HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 121 NVGSLEIPEE------------TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 121 SdGti~i~~~------------~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
...+-++-.+ .-.+.|+.+++.|++|. |+-.+- . |. + .
T Consensus 105 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~e~~-~------Da--------~-------------r 154 (524)
T PRK12344 105 FGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI--FDAEHF-F------DG--------Y-------------K 154 (524)
T ss_pred EECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--Eccccc-c------cc--------c-------------c
Confidence 8765443222 22367888999888752 333100 0 10 0 0
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ ++.++...++||+.|. |+|..|-..+..+.++++.+
T Consensus 155 ~d~~~l---~~~~~~~~~~Gad~i~-----l~DTvG~~~P~~v~~li~~l 196 (524)
T PRK12344 155 ANPEYA---LATLKAAAEAGADWVV-----LCDTNGGTLPHEVAEIVAEV 196 (524)
T ss_pred CCHHHH---HHHHHHHHhCCCCeEE-----EccCCCCcCHHHHHHHHHHH
Confidence 126777 8888889999999886 88888998888888777654
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=87.44 E-value=3.3 Score=39.92 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=56.0
Q ss_pred EEEeeCcccccCChhHHHHHHHHHHhC-Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-C--C
Q 022296 56 GLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-I--P 128 (299)
Q Consensus 56 ~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~--~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-i--~ 128 (299)
..|-|.|++.+.+++.+.+.++-.++. ++++. . .||-+ ......++.+.+.+.|.+.|.|...+.+ + .
T Consensus 105 v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-----~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G 179 (321)
T PRK10415 105 VNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-----EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG 179 (321)
T ss_pred HcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-----CcchHHHHHHHHHHhCCCEEEEecCccccccCC
Confidence 356777888899999999999988764 44444 2 35533 1124678888899999999999987642 1 1
Q ss_pred hhHHHHHHHHHHH
Q 022296 129 EETLLRYVRLVKS 141 (299)
Q Consensus 129 ~~~r~~lI~~~~~ 141 (299)
..+ .++|+++++
T Consensus 180 ~a~-~~~i~~ik~ 191 (321)
T PRK10415 180 EAE-YDSIRAVKQ 191 (321)
T ss_pred CcC-hHHHHHHHH
Confidence 233 378888887
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.44 E-value=3.3 Score=40.00 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=75.9
Q ss_pred HHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcC
Q 022296 78 RAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 78 l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~G 143 (299)
++..-+|+|.- + ||- ++..+.+.++...+.|.-.|-|-|.. --+|.++.++-|+.+++.-
T Consensus 73 I~~~~~iPviaD~d~GyG------~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~ 146 (292)
T PRK11320 73 ITDACDLPLLVDIDTGFG------GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDAR 146 (292)
T ss_pred HHhccCCCEEEECCCCCC------CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhc
Confidence 44555677664 2 342 22356667888889999999998854 2368898888888887741
Q ss_pred CcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC
Q 022296 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 144 ~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
- -++|-+ ...+ |. + + .. ..++. |+++++..+||||.|.+|+- .
T Consensus 147 ~--~~d~~I---iART----Da----~-----~---------~~--g~deA---I~Ra~aY~eAGAD~ifi~~~--~--- 189 (292)
T PRK11320 147 T--DPDFVI---MART----DA----L-----A---------VE--GLDAA---IERAQAYVEAGADMIFPEAM--T--- 189 (292)
T ss_pred c--CCCeEE---EEec----Cc----c-----c---------cc--CHHHH---HHHHHHHHHcCCCEEEecCC--C---
Confidence 1 133433 1111 10 0 0 01 15677 99999999999999999972 1
Q ss_pred CcccHHHHHHHHhccC
Q 022296 224 DSLRADIIAKVIGRLG 239 (299)
Q Consensus 224 G~~r~d~i~~ii~~l~ 239 (299)
..+.+.++.+.++
T Consensus 190 ---~~~~i~~~~~~~~ 202 (292)
T PRK11320 190 ---ELEMYRRFADAVK 202 (292)
T ss_pred ---CHHHHHHHHHhcC
Confidence 3677778887665
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=87.43 E-value=1.8 Score=42.18 Aligned_cols=79 Identities=11% Similarity=0.107 Sum_probs=53.6
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccc------cCChhHHHHHHHHHHhC-C-----cee----cCCcHHHHHHHhCCchH
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH-D-----VYV----STGDWAEHLIRNGPSAF 103 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~-g-----V~v----~~GtlfE~a~~qg~~~~ 103 (299)
...+..+++.+++|.|++=+-+++-. ...++.+.+.++-.++. + ++| .|+. .. +.+
T Consensus 156 ~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~------~~--~~~ 227 (344)
T PRK05286 156 VDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL------SD--EEL 227 (344)
T ss_pred HHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC------CH--HHH
Confidence 45777888888889999888775543 33445566666666652 2 433 3330 01 146
Q ss_pred HHHHHHHHHcCCCEEEecCCccc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLE 126 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~ 126 (299)
.+..+.|.+.|.|.|.+++++.+
T Consensus 228 ~~ia~~l~~~Gadgi~~~nt~~~ 250 (344)
T PRK05286 228 DDIADLALEHGIDGVIATNTTLS 250 (344)
T ss_pred HHHHHHHHHhCCcEEEEeCCccc
Confidence 67888899999999999999854
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=87.21 E-value=1.8 Score=40.79 Aligned_cols=107 Identities=9% Similarity=0.127 Sum_probs=70.7
Q ss_pred chhHHHHHHHh-hcccccEEEeeCcccc-cCChhHHH--------------HHHHHHHh----CCceecCCcHHHHHHHh
Q 022296 39 SHNVLEDIFES-MGQFVDGLKFSGGSHS-LMPKPFIE--------------EVVKRAHQ----HDVYVSTGDWAEHLIRN 98 (299)
Q Consensus 39 g~~~l~DlLe~-ag~yID~lKfg~GTs~-l~p~~~l~--------------eKI~l~~~----~gV~v~~GtlfE~a~~q 98 (299)
.+..+.+++.. .-..+|++=+|+=.|= +.+-..++ +-.++.++ +++++..=|++-..+..
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~ 93 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKR 93 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 44555554443 3456999999975431 11111111 22233322 44543333667777766
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.+++|++.|++.|.+.+=|- +||.++..++++.++++|+..++=+.-
T Consensus 94 ---G~~~F~~~~~~aGv~Gviip----DLP~ee~~~~~~~~~~~gl~~I~lv~P 140 (250)
T PLN02591 94 ---GIDKFMATIKEAGVHGLVVP----DLPLEETEALRAEAAKNGIELVLLTTP 140 (250)
T ss_pred ---HHHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 49999999999999999887 588999999999999999987775533
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=5.2 Score=41.44 Aligned_cols=152 Identities=15% Similarity=0.080 Sum_probs=85.4
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCC---ceecCCcHHHH-HHHhC-CchHHHHHHHHHHcCC
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEH-LIRNG-PSAFKEYVEDCKQVGF 115 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g---V~v~~GtlfE~-a~~qg-~~~~~~yl~~~k~lGF 115 (299)
-.+-+.|..+| ||.+-.||-.+. |.+ .+.++...+.. ...+.+....+ ++.+- .+.++.-++..++-|.
T Consensus 109 i~Ia~~L~~~G--Vd~IEvG~Pa~s--~~e--~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~ 182 (503)
T PLN03228 109 LEIARQLAKLR--VDIMEVGFPGSS--EEE--FEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAKR 182 (503)
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCC--HHH--HHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccCC
Confidence 45667788888 889999883332 222 22233333221 11122211111 22221 0013333332333377
Q ss_pred CEEEecCCcccCChhHH------------HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 116 DTIELNVGSLEIPEETL------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r------------~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
+.|-+.-.+-++-.+.+ .+.|+.+++.|+.+ .+|+-. |. +
T Consensus 183 ~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~-v~f~~E----------Da------------~----- 234 (503)
T PLN03228 183 PRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHD-IQFGCE----------DG------------G----- 234 (503)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCce-EEeccc----------cc------------c-----
Confidence 88887666554443322 67888999998761 233331 10 0
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ .+.++...++||+.| .|+|..|-..+..+.+++..+
T Consensus 235 ----Rtd~efl---~~~~~~a~~~Gad~I-----~l~DTvG~~tP~~v~~lV~~l 277 (503)
T PLN03228 235 ----RSDKEFL---CKILGEAIKAGATSV-----GIADTVGINMPHEFGELVTYV 277 (503)
T ss_pred ----ccCHHHH---HHHHHHHHhcCCCEE-----EEecCCCCCCHHHHHHHHHHH
Confidence 1126777 888899999999986 478889999988888777554
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.5 Score=40.32 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=70.2
Q ss_pred HHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 74 EVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 74 eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+-.+...+++| .|.-|.=.|. .-+..+.+.+.|+++|||. +......+.|+.+++.. |++
T Consensus 7 ~~~~~l~~~~~iaV~r~~~~~~--------a~~i~~al~~~Gi~~iEit-----l~~~~~~~~I~~l~~~~----p~~-- 67 (212)
T PRK05718 7 SIEEILRAGPVVPVIVINKLED--------AVPLAKALVAGGLPVLEVT-----LRTPAALEAIRLIAKEV----PEA-- 67 (212)
T ss_pred HHHHHHHHCCEEEEEEcCCHHH--------HHHHHHHHHHcCCCEEEEe-----cCCccHHHHHHHHHHHC----CCC--
Confidence 34456678887 4544643333 3345688899999999998 55567889999998731 222
Q ss_pred ecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-----------cccc
Q 022296 153 MFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-----------DVCK 221 (299)
Q Consensus 153 K~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-----------gi~d 221 (299)
-||. + |- ++ .++++..++|||++++.=+= ++--
T Consensus 68 -----~IGA--G---------------------TV-l~-------~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~ 111 (212)
T PRK05718 68 -----LIGA--G---------------------TV-LN-------PEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPL 111 (212)
T ss_pred -----EEEE--e---------------------ec-cC-------HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCE
Confidence 1221 1 00 11 35569999999999997652 1111
Q ss_pred CCCcccHHHHHHHHhccCCCceEE
Q 022296 222 HADSLRADIIAKVIGRLGLEKTMF 245 (299)
Q Consensus 222 ~~G~~r~d~i~~ii~~l~~eklif 245 (299)
==|-....++.+.. +.|.+-+-+
T Consensus 112 iPG~~TptEi~~a~-~~Ga~~vKl 134 (212)
T PRK05718 112 IPGVSTPSELMLGM-ELGLRTFKF 134 (212)
T ss_pred eCCCCCHHHHHHHH-HCCCCEEEE
Confidence 11555555555543 467665555
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=86.86 E-value=21 Score=31.79 Aligned_cols=124 Identities=16% Similarity=0.172 Sum_probs=77.0
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 022296 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (299)
Q Consensus 83 gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~ 162 (299)
+|++-.+++ .. -...++.|.+.|.|.|=+..- .++.++-.++++.++..|+.+..++.-
T Consensus 72 ~iPi~~~~~-----i~----~~~~v~~~~~~Gad~v~l~~~--~~~~~~~~~~~~~~~~~g~~~~v~v~~---------- 130 (217)
T cd00331 72 SLPVLRKDF-----II----DPYQIYEARAAGADAVLLIVA--ALDDEQLKELYELARELGMEVLVEVHD---------- 130 (217)
T ss_pred CCCEEECCe-----ec----CHHHHHHHHHcCCCEEEEeec--cCCHHHHHHHHHHHHHcCCeEEEEECC----------
Confidence 787776551 11 124799999999999998544 455577778999888877766433310
Q ss_pred ccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCC-C
Q 022296 163 RDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL-E 241 (299)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~-e 241 (299)
.+++++.+++|+++|.+=++..... ....+.+.++.+.++. -
T Consensus 131 -----------------------------------~~e~~~~~~~g~~~i~~t~~~~~~~--~~~~~~~~~l~~~~~~~~ 173 (217)
T cd00331 131 -----------------------------------EEELERALALGAKIIGINNRDLKTF--EVDLNTTERLAPLIPKDV 173 (217)
T ss_pred -----------------------------------HHHHHHHHHcCCCEEEEeCCCcccc--CcCHHHHHHHHHhCCCCC
Confidence 2334777889999998876532211 2334667777766642 2
Q ss_pred ceEEecCCch-hHHHHHHHhCCCc
Q 022296 242 KTMFEATNPR-TSEWFIRRYGPKV 264 (299)
Q Consensus 242 klifEAP~k~-qQ~~fI~~fG~~V 264 (299)
.++-+.=-.+ .+..-+...|.+.
T Consensus 174 pvia~gGI~s~edi~~~~~~Ga~g 197 (217)
T cd00331 174 ILVSESGISTPEDVKRLAEAGADA 197 (217)
T ss_pred EEEEEcCCCCHHHHHHHHHcCCCE
Confidence 4455554333 5555556666543
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=86.53 E-value=4 Score=38.45 Aligned_cols=74 Identities=27% Similarity=0.283 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 102 AFKEYVEDCKQVG-FDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 102 ~~~~yl~~~k~lG-F~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
.+.+..+.+++.| ||+|||+-++-. -..+.-.++|+.+++.- -+| +.+|-.
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~p-v~vKl~---------------- 165 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVP-VIVKLT---------------- 165 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEEcC----------------
Confidence 5666677788889 999999654322 23466678888888752 122 455521
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEE
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMI 214 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIi 214 (299)
| +++++ ++.++...++|||.|.+
T Consensus 166 -~----------------~~~~~---~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 166 -P----------------NVTDI---VEIAKAAEEAGADGLSL 188 (301)
T ss_pred -C----------------CchhH---HHHHHHHHHcCCCEEEE
Confidence 1 02234 56677788999998876
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=86.50 E-value=3.9 Score=40.39 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=59.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
.+.+++-|.++|-|-+|+ ..+...|+.+.+.|.-|.-.+|..-. + +..++.|=. .+.
T Consensus 120 ~rl~~eaGa~aVKlEGg~-----~~~~~~I~~l~~~GIPV~gHiGLtPQ-s------~~~lGGykv-----------qGr 176 (332)
T PLN02424 120 VRMLKEGGMDAVKLEGGS-----PSRVTAAKAIVEAGIAVMGHVGLTPQ-A------ISVLGGFRP-----------QGR 176 (332)
T ss_pred HHHHHHhCCcEEEECCCc-----HHHHHHHHHHHHcCCCEEEeecccce-e------ehhhcCccc-----------cCC
Confidence 445577899999999997 56789999999999999999988421 1 111111100 000
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
..-+..++ ++.++.--+|||+.|.+|+
T Consensus 177 ~~~~a~~l---i~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 177 TAESAVKV---VETALALQEAGCFAVVLEC 203 (332)
T ss_pred CHHHHHHH---HHHHHHHHHcCCcEEEEcC
Confidence 11124567 9999999999999999998
|
|
| >COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.45 E-value=1.5 Score=41.86 Aligned_cols=58 Identities=26% Similarity=0.437 Sum_probs=46.9
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccce
Q 022296 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPK 149 (299)
Q Consensus 91 lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E 149 (299)
..|.|+-.+ -+..+=+..+|++|||-||+|-.- ++-+.++|..+++.+.+.|+..-+-
T Consensus 9 IYEKAlp~~-~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSm 73 (287)
T COG3623 9 IYEKALPNG-FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSM 73 (287)
T ss_pred eehhhccCC-CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccch
Confidence 346776554 457777889999999999999753 5889999999999999999886553
|
|
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=86.30 E-value=7.3 Score=31.21 Aligned_cols=96 Identities=23% Similarity=0.390 Sum_probs=70.7
Q ss_pred chhHHHHHHHhhc-cc-ccEEEeeCcccccCChhHHHHHHHHHHhC---CceecC---CcHHHHHHHhCCchHHHHHHHH
Q 022296 39 SHNVLEDIFESMG-QF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDC 110 (299)
Q Consensus 39 g~~~l~DlLe~ag-~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~---gV~v~~---GtlfE~a~~qg~~~~~~yl~~~ 110 (299)
.+..+.+.+.... +. +..+=|++|...+.| ...+++..+++. ++.+.. |++.. +++++.+
T Consensus 29 ~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~--~~~~~~~~~~~~~~~~~~i~~~t~~~~~~----------~~~l~~l 96 (166)
T PF04055_consen 29 SPEEILEEIKELKQDKGVKEIFFGGGEPTLHP--DFIELLELLRKIKKRGIRISINTNGTLLD----------EELLDEL 96 (166)
T ss_dssp HHHHHHHHHHHHHHHTTHEEEEEESSTGGGSC--HHHHHHHHHHHCTCTTEEEEEEEESTTHC----------HHHHHHH
T ss_pred CHHHHHHHHHHHhHhcCCcEEEEeecCCCcch--hHHHHHHHHHHhhccccceeeeccccchh----------HHHHHHH
Confidence 4455666555552 33 899999999999998 667777777775 775553 55443 6788999
Q ss_pred HHcCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCcc
Q 022296 111 KQVGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 111 k~lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v 146 (299)
+++|++.|.+|=-+.+ -+.++..+.++.+++.|+..
T Consensus 97 ~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 97 KKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSET
T ss_pred HhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 9999999998755542 35567788999999999884
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=86.15 E-value=5 Score=38.07 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=39.7
Q ss_pred cccccCChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022296 62 GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (299)
Q Consensus 62 GTs~l~p~~~l~eKI~l~~~~-gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (299)
|......++.+.+.++..++. ++++.. -+. +.+.+.++.+.|.+.|.+.|=++|-+..
T Consensus 146 G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-------~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 146 GAAVGQDPELVEEICRWVREAVKIPVIAKLTP-------NITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred chhhccCHHHHHHHHHHHHHhcCCCeEEECCC-------CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 444556778899999888764 455443 111 1125778888899999999998886643
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=85.98 E-value=10 Score=34.84 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=64.6
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCce---------------ecCC
Q 022296 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---------------VSTG 89 (299)
Q Consensus 25 GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~---------------v~~G 89 (299)
.++.+.+=|+. ....++.+++ +| .|. +..||..+.+++.+++..+.+.+-.|. |.+-
T Consensus 74 ~ipv~~~GGi~---s~~~~~~~l~-~G--a~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~ 145 (253)
T PRK02083 74 FIPLTVGGGIR---SVEDARRLLR-AG--ADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTH 145 (253)
T ss_pred CCCEEeeCCCC---CHHHHHHHHH-cC--CCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEc
Confidence 45666666662 4566677777 33 444 467898888888888766655211122 2222
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHH
Q 022296 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI----SdGti~i~~~~r~~lI~~~~~ 141 (299)
+|.+. ......++.+.+.++|++.|=+ .+|+..-++ ..+|+.+++
T Consensus 146 ~~~~~----~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~ 194 (253)
T PRK02083 146 GGRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD---LELTRAVSD 194 (253)
T ss_pred CCcee----cCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC---HHHHHHHHh
Confidence 34432 1226778899999999999888 457777664 456666666
|
|
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=85.92 E-value=6.1 Score=37.90 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=73.3
Q ss_pred chhHHHHHHHhhc-ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC--CcHHHHHHHh---CCchHHHHHHHHHH
Q 022296 39 SHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRN---GPSAFKEYVEDCKQ 112 (299)
Q Consensus 39 g~~~l~DlLe~ag-~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--GtlfE~a~~q---g~~~~~~yl~~~k~ 112 (299)
.+.++.+.++.+. .-++-+=|.+|.....+.+.+.+.++..++++..+.. =+..|+.... | -..++-++.+|+
T Consensus 73 s~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g-~~~~e~l~~Lk~ 151 (340)
T TIGR03699 73 SVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEG-LSLREVLERLKE 151 (340)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCC-CCHHHHHHHHHH
Confidence 4445444443322 2266777777877777888888999999887643332 2566664332 3 124899999999
Q ss_pred cCCCEEEe-----c-CCcc------cCChhHHHHHHHHHHHcCCccccee
Q 022296 113 VGFDTIEL-----N-VGSL------EIPEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 113 lGF~~IEI-----S-dGti------~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
.|++.+-- . +-+. ..+.+++.+.|+.+++.|+++.+-+
T Consensus 152 aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 152 AGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred cCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccee
Confidence 99987641 1 1111 3478889999999999999877643
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.72 E-value=14 Score=35.08 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=35.0
Q ss_pred HHHHHHHHHccCcEEEEecc-----ccccCCCcccHHHHHHHHhcc
Q 022296 198 SRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i~~ii~~l 238 (299)
...+...+.+||+-+|||.- -+.|..-.+..+.+.++++.+
T Consensus 214 ~~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i 259 (266)
T PRK13398 214 IPMAKAAIAAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDEL 259 (266)
T ss_pred HHHHHHHHHcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHHH
Confidence 55578899999999999983 678999999999999998754
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.58 E-value=13 Score=35.22 Aligned_cols=106 Identities=12% Similarity=0.183 Sum_probs=69.4
Q ss_pred chhHHHHHHHhh-cccccEEEeeCccc-ccCChhHHHHHHHHH------------------HhCCceecCCcHHHHHHHh
Q 022296 39 SHNVLEDIFESM-GQFVDGLKFSGGSH-SLMPKPFIEEVVKRA------------------HQHDVYVSTGDWAEHLIRN 98 (299)
Q Consensus 39 g~~~l~DlLe~a-g~yID~lKfg~GTs-~l~p~~~l~eKI~l~------------------~~~gV~v~~GtlfE~a~~q 98 (299)
.+..+.+++... -.-+|++=+|+=.| .+.+-..+++--..| +++++++..=|++...+..
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 455666655433 34499999997443 122222222222222 2245544333667777776
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (299)
| +++|++.|++.|+|.|=|= ++|.++..++++.++++|+...+=+.
T Consensus 107 G---~e~F~~~~~~aGvdgviip----DLP~ee~~~~~~~~~~~gi~~I~lv~ 152 (263)
T CHL00200 107 G---INKFIKKISQAGVKGLIIP----DLPYEESDYLISVCNLYNIELILLIA 152 (263)
T ss_pred C---HHHHHHHHHHcCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5 9999999999999999874 57889999999999999887665443
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=85.55 E-value=8.7 Score=43.52 Aligned_cols=159 Identities=11% Similarity=0.102 Sum_probs=106.7
Q ss_pred chhHHHHHHHhh-cccccEEEeeCcccccCChhHHHHHHHHHHhCCc--eec---CCcHHHHHHH--hCCchHHHHHHHH
Q 022296 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVS---TGDWAEHLIR--NGPSAFKEYVEDC 110 (299)
Q Consensus 39 g~~~l~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~---~GtlfE~a~~--qg~~~~~~yl~~~ 110 (299)
.-+-.+++++.| ..-||++-+.-...- -+.++.-|+.++++|- .++ +|..+ -+.. ..++.+-++.+++
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd---~~~~~~~i~~vk~~g~~~~~~i~ytg~~~-d~~~~~~~~~~~~~~a~~l 700 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNW---VENMRVAIDAVRETGKIAEAAICYTGDIL-DPARAKYDLDYYVDLAKEL 700 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCCh---HHHHHHHHHHHHHcCCeEEEEEEEEecCC-CCCCCCCCHHHHHHHHHHH
Confidence 344667766654 455999998864444 4679999999999993 222 34322 1111 2223456667778
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccc
Q 022296 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIE 190 (299)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
.++|.+.|=|.|-.--+.+.+-.++|+.+++.= . -.++.... .+
T Consensus 701 ~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~--ipi~~H~H-nt-------------------------------- 744 (1146)
T PRK12999 701 EKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-D--LPIHLHTH-DT-------------------------------- 744 (1146)
T ss_pred HHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-C--CeEEEEeC-CC--------------------------------
Confidence 889999999999999999999999999999841 1 12343211 11
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCC
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
.... +-..-..++|||+.|=.=-.|+-...||...+.+-..+...+.
T Consensus 745 ~Gla---~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~~~ 791 (1146)
T PRK12999 745 SGNG---LATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTER 791 (1146)
T ss_pred CchH---HHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhcCC
Confidence 1223 5556789999999765555588888888887777666665443
|
|
| >PRK09989 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.99 E-value=1.7 Score=39.71 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
.+.+.++.++++||+.||+.. ....+ ..++-+.+++.|+++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~-~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF-PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC-cccCC---HHHHHHHHHHcCCcEE
Confidence 789999999999999999964 23343 3457777888999865
|
|
| >PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP | Back alignment and domain information |
|---|
Probab=84.97 E-value=2.1 Score=38.80 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=68.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHH---HHHHcC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVE---DCKQVG 114 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~Gt-lfE~a~~qg~~~~~~yl~---~~k~lG 114 (299)
....+.++++..++|+|++|+|+--..-+..+.+++-++.+++++.++.--. +..+ |+-+..|.+ .+.++|
T Consensus 11 ~~~~a~~i~~~~~~~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~~~I~~D~K~~Di-----g~t~~~~~~~~~~~~~~g 85 (226)
T PF00215_consen 11 DLEEALRIADELGDYVDIIKVGTPLFLAYGLEALPEIIEELKERGKPIFLDLKLGDI-----GNTVARYAEAGFAAFELG 85 (226)
T ss_dssp SHHHHHHHHHHHGGGSSEEEEEHHHHHHHCHHHHHHHHHHHHHTTSEEEEEEEE-SS-----HHHHHHHHHSCHHHHTTT
T ss_pred CHHHHHHHHHHhcCcceEEEEChHHHhcCChhhHHHHHHHHHHhcCCEeeeeeeccc-----chHHHHHHHHhhhhhcCC
Confidence 4567889999999999999999877777777789999999999997666421 2211 112333444 567788
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcC
Q 022296 115 FDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (299)
+|++-|+-- .+.+....+++.+++.|
T Consensus 86 aD~vTv~~~---~G~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 86 ADAVTVHPF---AGDDTLEAAVKAAKKHG 111 (226)
T ss_dssp ESEEEEEGT---THHHHHHHHHHHHHHTT
T ss_pred CcEEEEecc---CCHHHHHHHHHHHhccC
Confidence 888877642 24667777777777765
|
In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A .... |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.80 E-value=14 Score=38.04 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=90.6
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
.+-+.|..+| ||.+=.||=.+.-.+.+.+++..++. .+..++. |. + ...+-++.+.+.|.+.|-+.
T Consensus 28 ~ia~~L~~~G--v~~IE~G~p~~~~~d~e~v~~i~~~~--~~~~i~a--~~-----r---~~~~di~~a~~~g~~~v~i~ 93 (488)
T PRK09389 28 EIARKLDELG--VDVIEAGSAITSEGEREAIKAVTDEG--LNAEICS--FA-----R---AVKVDIDAALECDVDSVHLV 93 (488)
T ss_pred HHHHHHHHcC--CCEEEEeCCcCCHHHHHHHHHHHhcC--CCcEEEe--ec-----c---cCHHHHHHHHhCCcCEEEEE
Confidence 4556677777 89999998654433334444443321 1233322 21 1 12344778888999999998
Q ss_pred CCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 122 VGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 122 dGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
..+-++- . +.-.+.|+.+++.|+.| +|+..+. . ..
T Consensus 94 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~~~~ed~-----~--------------------------r~ 140 (488)
T PRK09389 94 VPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIV--ELSGEDA-----S--------------------------RA 140 (488)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEeeC-----C--------------------------CC
Confidence 8765542 2 23345678888888764 3444211 0 01
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+++.+ ++.++...++||+.|. |+|..|-..+..+.+++..+-
T Consensus 141 ~~~~l---~~~~~~~~~~Ga~~i~-----l~DTvG~~~P~~~~~lv~~l~ 182 (488)
T PRK09389 141 DLDFL---KELYKAGIEAGADRIC-----FCDTVGILTPEKTYELFKRLS 182 (488)
T ss_pred CHHHH---HHHHHHHHhCCCCEEE-----EecCCCCcCHHHHHHHHHHHH
Confidence 26677 7888888999999864 688999999888888876653
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=84.79 E-value=6.2 Score=35.43 Aligned_cols=97 Identities=21% Similarity=0.305 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC-ccc---CChhHHHHHHHHHHHc-C
Q 022296 70 PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG-SLE---IPEETLLRYVRLVKSA-G 143 (299)
Q Consensus 70 ~~l~eKI~l~~~-~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG-ti~---i~~~~r~~lI~~~~~~-G 143 (299)
+.+.+.++.+|+ .++.+.++.- ..++ ...+.+.|+|+|-++.+ ... ........+++.+++. +
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~----------t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~ 173 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS----------TLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG 173 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC----------CHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC
Confidence 468889999999 8888776521 1222 24577889999977532 211 1112224567776664 4
Q ss_pred CcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc
Q 022296 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK 221 (299)
Q Consensus 144 ~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d 221 (299)
..|....|++ + .+.+++.+++||+-|++=+ .|++
T Consensus 174 iPvia~GGI~----------------------------------t---------~~~~~~~l~~GadgV~iGs-ai~~ 207 (221)
T PRK01130 174 CPVIAEGRIN----------------------------------T---------PEQAKKALELGAHAVVVGG-AITR 207 (221)
T ss_pred CCEEEECCCC----------------------------------C---------HHHHHHHHHCCCCEEEEch-HhcC
Confidence 4444444441 1 3444888999999999853 3655
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=84.63 E-value=13 Score=33.00 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=56.0
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~ 166 (299)
|+.+.+..+.+++.|||.|||+-|+- .=..+.-.++|+.+++. +..-+.+|...+
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~---~~~~v~vk~r~~--------- 133 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA---VPIPVTVKIRLG--------- 133 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh---cCCCEEEEEeec---------
Confidence 34555666777888999999997651 12333445677777653 101245543211
Q ss_pred ccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc-CCCcccHHHHHHHHh
Q 022296 167 FGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIG 236 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d-~~G~~r~d~i~~ii~ 236 (299)
|. + .++. ++.++...++|+++|.+-++.-.. ..+....+.+.++.+
T Consensus 134 ---------~~----------~--~~~~---~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~ 180 (231)
T cd02801 134 ---------WD----------D--EEET---LELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE 180 (231)
T ss_pred ---------cC----------C--chHH---HHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh
Confidence 10 0 0134 566677778899999997762111 122334455555544
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=84.60 E-value=9.6 Score=34.54 Aligned_cols=46 Identities=17% Similarity=0.077 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
-+.+.+.++++|.++|-+-+.--.++.++-.++++.+++.|+.++-
T Consensus 74 g~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~ 119 (223)
T PRK04302 74 GHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVV 119 (223)
T ss_pred hhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEE
Confidence 4456899999999999998876668888888999999999998763
|
|
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=84.60 E-value=13 Score=36.71 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=61.3
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (299)
.-|+-+=||+||..+++.+.|++.++..+++= +..+. .|+.+.-+|+. -++.++.++++||+.|.|---|.
T Consensus 72 ~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~-~~~~~--~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 72 RQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL-PLDPD--AEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred CceeEEEECCCCcCCCCHHHHHHHHHHHHHhC-CCCCC--CeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 45888999999999999999999999998751 11111 23333333332 25789999999999988855444
Q ss_pred -----cCChhHHHHHHHHHHHcC
Q 022296 126 -----EIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G 143 (299)
.-+.++-.+.|+.+++.+
T Consensus 149 ~~l~R~~~~~~~~~~i~~~~~~~ 171 (394)
T PRK08898 149 KALGRIHDGAEARAAIEIAAKHF 171 (394)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhC
Confidence 123455556777777753
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=10 Score=35.97 Aligned_cols=110 Identities=16% Similarity=0.243 Sum_probs=78.4
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+.+++.+|-|+|=+--.. ++.++..++++.+.+.||.++-|++-+
T Consensus 117 I~ea~~~GADavLLI~~~--L~~~~l~~l~~~a~~lGle~LVEVh~~--------------------------------- 161 (247)
T PRK13957 117 IREARAFGASAILLIVRI--LTPSQIKSFLKHASSLGMDVLVEVHTE--------------------------------- 161 (247)
T ss_pred HHHHHHcCCCEEEeEHhh--CCHHHHHHHHHHHHHcCCceEEEECCH---------------------------------
Confidence 567788999999665554 467788899999999999999988651
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKV 264 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ekl-ifEAP~k-~qQ~~fI~~fG~~V 264 (299)
+++ ++.+++||..|-|..|.+..- ++..+...+++..+|-+.+ |-|.=-+ ..+...+++. .|-
T Consensus 162 -----~El-------~~a~~~ga~iiGINnRdL~t~--~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~da 226 (247)
T PRK13957 162 -----DEA-------KLALDCGAEIIGINTRDLDTF--QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDA 226 (247)
T ss_pred -----HHH-------HHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCE
Confidence 223 778999999999999977443 4456667888888886665 4454422 2344445554 443
Q ss_pred cc
Q 022296 265 NL 266 (299)
Q Consensus 265 NL 266 (299)
-|
T Consensus 227 vL 228 (247)
T PRK13957 227 AL 228 (247)
T ss_pred EE
Confidence 33
|
|
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=84.45 E-value=5.7 Score=37.36 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=76.5
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
+.+.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.-=+| =+|+ |.
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~v--i~gv-------g~-------------- 74 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKV--IFQV-------GS-------------- 74 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCE--EEEe-------Cc--------------
Confidence 34578899999999999999886543 5799999999999888742111 1222 10
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccC-CCcccHHHHHHHHhccCCCceEEecCCch---
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRLGLEKTMFEATNPR--- 251 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~-~G~~r~d~i~~ii~~l~~eklifEAP~k~--- 251 (299)
.+.++. ++.++..-++|||.|++=.--.|.. +-+--.+-...|++ ++.=++...|...
T Consensus 75 -------------~~~~~a---i~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~ 136 (279)
T cd00953 75 -------------LNLEES---IELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGYD 136 (279)
T ss_pred -------------CCHHHH---HHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCCC
Confidence 114556 8999999999999999866433331 11111222334444 5556777777422
Q ss_pred hHHHHHHHhC
Q 022296 252 TSEWFIRRYG 261 (299)
Q Consensus 252 qQ~~fI~~fG 261 (299)
.-...+.++-
T Consensus 137 l~~~~l~~L~ 146 (279)
T cd00953 137 INARMAKEIK 146 (279)
T ss_pred CCHHHHHHHH
Confidence 2234555554
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=84.11 E-value=5 Score=38.55 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHcCCCEEEec------CCcc-------cCChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELN------VGSL-------EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS------dGti-------~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.++.|++.+|++||..|-=- ||.. -|.-+.=.++|++|++.||...|
T Consensus 96 ~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~ 155 (268)
T PF09370_consen 96 DMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTA 155 (268)
T ss_dssp -HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--
T ss_pred cHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeee
Confidence 58899999999999887522 2222 34555667899999998887444
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=83.73 E-value=21 Score=29.52 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=52.5
Q ss_pred HHHHHHHhhccc-ccEEEeeCcccccCChhHH--HHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022296 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l--~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
...+..+.+.+. +|++-++.-.......... +....+.+..++++......-... +.+....+.+++.|+|.|
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA----AAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch----hhhhHHHHHHHHcCCCEE
Confidence 334444444443 8888888644333322112 124455666777655532210000 011122468999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHc
Q 022296 119 ELNVGSLEIPEETLLRYVRLVKSA 142 (299)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~ 142 (299)
+|..+....+ +.-.++++.+++.
T Consensus 89 ~l~~~~~~~~-~~~~~~~~~i~~~ 111 (200)
T cd04722 89 EIHGAVGYLA-REDLELIRELREA 111 (200)
T ss_pred EEeccCCcHH-HHHHHHHHHHHHh
Confidence 9999886553 3334667777764
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.72 E-value=8.5 Score=35.83 Aligned_cols=140 Identities=21% Similarity=0.296 Sum_probs=86.4
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcC----C
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG----F 115 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lG----F 115 (299)
.+-+.|..+| ||.+=+|+.. .-|.+. +.++.+++. ++.+. .|. +. -.+.++.+.+.| +
T Consensus 24 ~i~~~L~~~G--v~~iEvg~~~--~~~~~~--~~~~~l~~~~~~~~~~--~l~-----r~---~~~~v~~a~~~~~~~~~ 87 (268)
T cd07940 24 EIARQLDELG--VDVIEAGFPA--ASPGDF--EAVKRIAREVLNAEIC--GLA-----RA---VKKDIDAAAEALKPAKV 87 (268)
T ss_pred HHHHHHHHcC--CCEEEEeCCC--CCHHHH--HHHHHHHHhCCCCEEE--EEc-----cC---CHhhHHHHHHhCCCCCC
Confidence 4445566677 7888887633 233332 555555543 33222 121 21 133355555566 9
Q ss_pred CEEEecCCccc--------CCh----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 116 DTIELNVGSLE--------IPE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 116 ~~IEISdGti~--------i~~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
+.|-+....-+ .+. +.-.+.|+.+++.|++|. |+..+. +
T Consensus 88 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~----~----------------------- 138 (268)
T cd07940 88 DRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FSAEDA----T----------------------- 138 (268)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EeeecC----C-----------------------
Confidence 99999775422 222 344578899999998754 333210 0
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ .+.+++..++||+.| .|.|..|...++.+.++++.+
T Consensus 139 ----~~~~~~~---~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 139 ----RTDLDFL---IEVVEAAIEAGATTI-----NIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred ----CCCHHHH---HHHHHHHHHcCCCEE-----EECCCCCCCCHHHHHHHHHHH
Confidence 0226777 888899999999876 478999999999998888754
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=83.59 E-value=2.2 Score=41.09 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHH
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKS 141 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~ 141 (299)
..-++.+.+.+.|.|+||||.|..+ ++......+.+.+++
T Consensus 242 e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~ 287 (336)
T cd02932 242 DSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ 287 (336)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHh
Confidence 3446666777889999999988542 223333456666666
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=83.57 E-value=24 Score=35.21 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=32.3
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCcccHH--HHHHHHhccCCCce--EEecCCchh
Q 022296 199 RRAERCLEAGADMIMIDSDDVCKHADSLRAD--IIAKVIGRLGLEKT--MFEATNPRT 252 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEargi~d~~G~~r~d--~i~~ii~~l~~ekl--ifEAP~k~q 252 (299)
+.+...+++||+.|++ ++.|+++. ++++- .+.+.+++..+-|+ .|+.|.++.
T Consensus 174 ~n~~~~l~aGAdgv~v-GsaI~~~~-d~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 229 (430)
T PRK07028 174 ETAAKAVAAGADIVIV-GGNIIKSA-DVTEAARKIREAIDSGKPVKIDKFKKSLDEEI 229 (430)
T ss_pred HHHHHHHHcCCCEEEE-ChHHcCCC-CHHHHHHHHHHHHhccCCccccccccCCCHHH
Confidence 4458889999998876 45588764 44322 23344455444443 688887754
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=83.30 E-value=18 Score=34.12 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.6
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
.++. ++.++..-++|+++|-+=++
T Consensus 227 ~~e~---~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 227 LEEA---IEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred HHHH---HHHHHHHHHcCCCEEEeCCC
Confidence 5666 78888889999999988655
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=83.24 E-value=2.1 Score=40.84 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=39.6
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEec
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEA 247 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEA 247 (299)
.+++++.|++||++|||=+--+. ++.+..+++.++++++|.++|+.=-
T Consensus 94 ~e~i~~~l~~Ga~rViigT~Av~--~~~~~p~~v~~~~~~~G~~~Ivvsi 141 (262)
T PLN02446 94 SENAMSYLDAGASHVIVTSYVFR--DGQIDLERLKDLVRLVGKQRLVLDL 141 (262)
T ss_pred HHHHHHHHHcCCCEEEEchHHHh--CCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 46779999999999999554443 4788899999999999999988733
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.95 E-value=39 Score=32.55 Aligned_cols=174 Identities=16% Similarity=0.232 Sum_probs=100.5
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec----CCc--------HHHHHH--HhC---C----
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--------WAEHLI--RNG---P---- 100 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--------lfE~a~--~qg---~---- 100 (299)
.++++|..|-+- +++-|.+-+++-+.++..|+-|.+.+.++. +|+ +...+. .+. |
T Consensus 5 ~~~~~l~~A~~~----~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lH 80 (286)
T PRK06801 5 SLANGLAHARKH----GYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLN 80 (286)
T ss_pred cHHHHHHHHHHC----CceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 455666555332 456666677777777777777776665442 121 111110 000 0
Q ss_pred ---chHHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccC
Q 022296 101 ---SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (299)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~ 173 (299)
...-+.++.|-+.||+.|=+ ||+- +|.++-. ++.+.++..|.-|--|+|. ||..++. ....+
T Consensus 81 lDH~~~~e~i~~Ai~~GftSVm~-D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~------vgg~e~~---v~~~~ 149 (286)
T PRK06801 81 LDHGLHFEAVVRALRLGFSSVMF-DGST-LEYEENVRQTREVVKMCHAVGVSVEAELGA------VGGDEGG---ALYGE 149 (286)
T ss_pred CCCCCCHHHHHHHHHhCCcEEEE-cCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCc------ccCCCCC---cccCC
Confidence 12346788888999999999 4443 4555544 4566677888877777776 2222221 00000
Q ss_pred CCCccchhcccCCCccchhhhhhhHHHHHHHH-HccCcEEEEecc----ccccCCCcccHHHHHHHHhccCCCceEEec
Q 022296 174 APRSTDKLFLASNPEIEVGVGINKSRRAERCL-EAGADMIMIDSD----DVCKHADSLRADIIAKVIGRLGLEKTMFEA 247 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dL-eAGA~~VIiEar----gi~d~~G~~r~d~i~~ii~~l~~eklifEA 247 (299)
... +. .| + .++++++. +.|+|++=+ += |.|+..-.+.-+.+.+|-+.++.--++-=.
T Consensus 150 ~~~-~~-----~T---~-------pe~a~~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGG 211 (286)
T PRK06801 150 ADS-AK-----FT---D-------PQLARDFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGG 211 (286)
T ss_pred ccc-cc-----CC---C-------HHHHHHHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECC
Confidence 000 00 11 1 34557777 689999999 63 789876679999999998876543344333
|
|
| >PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 | Back alignment and domain information |
|---|
Probab=82.94 E-value=6.7 Score=33.24 Aligned_cols=148 Identities=17% Similarity=0.213 Sum_probs=81.8
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~---~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
|+.++++||+.||++-....... ++..++.+.+++.|+++..--...+.........+ +.+- .+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~--------~~~~-r~---- 67 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGS--------ANDE-RE---- 67 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTT--------SSSH-HH----
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccC--------cchh-hH----
Confidence 57899999999999987765554 57778999999999995553222221110000000 0000 00
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccc--cccCCCc--cc---H---HHHHHHHhccCCCceEEecCC----
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDD--VCKHADS--LR---A---DIIAKVIGRLGLEKTMFEATN---- 249 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEarg--i~d~~G~--~r---~---d~i~~ii~~l~~eklifEAP~---- 249 (299)
-.++.+ .+.++.+=+.|+.+|++-+-. ....... .. . ..+.++++..|+ ++.+|--.
T Consensus 68 -----~~~~~~---~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~i~lE~~~~~~~ 138 (213)
T PF01261_consen 68 -----EALEYL---KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGV-RIALENHPGPFS 138 (213)
T ss_dssp -----HHHHHH---HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTS-EEEEE-SSSSSS
T ss_pred -----HHHHHH---HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcc-eEEEecccCccc
Confidence 114455 444444445599999998541 1111110 00 1 222233344453 47777432
Q ss_pred --c---hhHHHHHHHhC-CCcccccCCCCchhh
Q 022296 250 --P---RTSEWFIRRYG-PKVNLFVDHSQVMDL 276 (299)
Q Consensus 250 --k---~qQ~~fI~~fG-~~VNLgI~~~eVi~L 276 (299)
. .+..++++.++ ++|++.+|..+...-
T Consensus 139 ~~~~~~~~~~~~l~~~~~~~~~i~~D~~h~~~~ 171 (213)
T PF01261_consen 139 ETPFSVEEIYRLLEEVDSPNVGICFDTGHLIMA 171 (213)
T ss_dssp SEESSHHHHHHHHHHHTTTTEEEEEEHHHHHHT
T ss_pred cchhhHHHHHHHHhhcCCCcceEEEehHHHHHc
Confidence 2 56789999999 567776766665533
|
1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B .... |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.92 E-value=15 Score=37.03 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=24.3
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 199 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+.++..+++||+.+++ ||.||.+.. ..+.++++.+.+
T Consensus 342 eti~~l~~aGADivVV-GsaIf~a~D--p~~aak~l~~~i 378 (391)
T PRK13307 342 ENVEEALKAGADILVV-GRAITKSKD--VRRAAEDFLNKL 378 (391)
T ss_pred HHHHHHHHcCCCEEEE-eHHHhCCCC--HHHHHHHHHHhh
Confidence 3457889999997766 677997653 244455555443
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=82.91 E-value=10 Score=35.99 Aligned_cols=115 Identities=22% Similarity=0.276 Sum_probs=79.5
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
+++| +.+++..|=|+|=+-... ++.++..++++.+++.||.++-|++-
T Consensus 119 id~~QI~eA~~~GADaVLLI~~~--L~~~~l~~l~~~a~~lGle~lVEVh~----------------------------- 167 (254)
T PF00218_consen 119 IDPYQIYEARAAGADAVLLIAAI--LSDDQLEELLELAHSLGLEALVEVHN----------------------------- 167 (254)
T ss_dssp -SHHHHHHHHHTT-SEEEEEGGG--SGHHHHHHHHHHHHHTT-EEEEEESS-----------------------------
T ss_pred CCHHHHHHHHHcCCCEeehhHHh--CCHHHHHHHHHHHHHcCCCeEEEECC-----------------------------
Confidence 3444 678999999999887665 55677789999999999999998865
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHH
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRR 259 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ekl-ifEAP~k-~qQ~~fI~~ 259 (299)
.+++ ++.+++||+.|-|-.|.+-.- ++..+...+++..+|.+.+ |-|.=-+ ..+...+.+
T Consensus 168 ---------~~El-------~~al~~~a~iiGINnRdL~tf--~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~ 229 (254)
T PF00218_consen 168 ---------EEEL-------ERALEAGADIIGINNRDLKTF--EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLAR 229 (254)
T ss_dssp ---------HHHH-------HHHHHTT-SEEEEESBCTTTC--CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCT
T ss_pred ---------HHHH-------HHHHHcCCCEEEEeCccccCc--ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHH
Confidence 1233 778899999999999976433 3445566778888885543 4455433 457777777
Q ss_pred hCCCccc
Q 022296 260 YGPKVNL 266 (299)
Q Consensus 260 fG~~VNL 266 (299)
.|.|-=|
T Consensus 230 ~G~davL 236 (254)
T PF00218_consen 230 AGADAVL 236 (254)
T ss_dssp TT-SEEE
T ss_pred CCCCEEE
Confidence 7776544
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=82.85 E-value=14 Score=34.42 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=25.5
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHH
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVI 235 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii 235 (299)
.+++....+||||.+++=+.+||.++.+ ..+.++.+-
T Consensus 180 ~~~i~~~~~aGad~~V~Gss~iF~~~~d-~~~~i~~l~ 216 (229)
T PRK09722 180 QKTYEKLMEAGADVFIVGTSGLFNLDED-IDEAWDIMT 216 (229)
T ss_pred HHHHHHHHHcCCCEEEEChHHHcCCCCC-HHHHHHHHH
Confidence 3455888999999999966679974333 455555553
|
|
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=82.84 E-value=30 Score=34.37 Aligned_cols=131 Identities=16% Similarity=0.117 Sum_probs=84.4
Q ss_pred HHHHHHHhCCceecC----C-c----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHH
Q 022296 74 EVVKRAHQHDVYVST----G-D----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVK 140 (299)
Q Consensus 74 eKI~l~~~~gV~v~~----G-t----lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~ 140 (299)
--..+++++.|+|+. | + |||.++.- +.+++..|.+.||+.|=+.--. +|.++= .+++++++
T Consensus 78 ~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a----~~~~~~~a~~~GftSVMiDgS~--lp~eENI~~TkevVe~Ah 151 (345)
T cd00946 78 HVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA----DEEYFKQHGEPLFSSHMLDLSE--EPLEENIEICKKYLERMA 151 (345)
T ss_pred HHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH----HHHHHHHhccCCCceEEeeCCC--CCHHHHHHHHHHHHHHHH
Confidence 334688899998874 5 4 68888765 4689999999999999775443 555543 35677788
Q ss_pred HcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHc-----cCcEEEEe
Q 022296 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEA-----GADMIMID 215 (299)
Q Consensus 141 ~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA-----GA~~VIiE 215 (299)
..|.-|--|+|.--+ ..|..... ..+. ..-+| ++++. +++.+. |.|.+=+=
T Consensus 152 ~~gvsVEaElG~igg------~ed~~~~~-~~~~--~~~yT--------dPeeA-------~~Fv~~t~~~tgvD~LAva 207 (345)
T cd00946 152 KINMWLEMEIGITGG------EEDGVDNS-GVDN--AELYT--------QPEDV-------WYVYEALSKISPNFSIAAA 207 (345)
T ss_pred HcCCEEEEEecccCC------cccCcccc-cccc--cccCC--------CHHHH-------HHHHHHhccCCCceeeeee
Confidence 889999999998321 11210000 0000 00011 24444 777775 87855432
Q ss_pred ---cccccc-CCCcccHHHHHHH
Q 022296 216 ---SDDVCK-HADSLRADIIAKV 234 (299)
Q Consensus 216 ---argi~d-~~G~~r~d~i~~i 234 (299)
+-|+|. ..-+++-+++++|
T Consensus 208 iGt~HG~Y~~~~p~L~~~~L~~I 230 (345)
T cd00946 208 FGNVHGVYKPGNVKLQPEILGEH 230 (345)
T ss_pred ccccccCCCCCCCccCHHHHHHH
Confidence 239998 4778999999999
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.84 E-value=5 Score=37.27 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=56.1
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 022296 75 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (299)
Q Consensus 75 KI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK 153 (299)
-++...+++| .|.-+.=.|. .-+..+.+.+-|+++|||.--+ ..-.+.|+.+++ +++.+
T Consensus 8 ~~~~l~~~~vi~Vvr~~~~~~--------a~~~~~al~~gGi~~iEiT~~t-----p~a~~~i~~l~~-------~~~~~ 67 (222)
T PRK07114 8 VLTAMKATGMVPVFYHADVEV--------AKKVIKACYDGGARVFEFTNRG-----DFAHEVFAELVK-------YAAKE 67 (222)
T ss_pred HHHHHHhCCEEEEEEcCCHHH--------HHHHHHHHHHCCCCEEEEeCCC-----CcHHHHHHHHHH-------HHHhh
Confidence 3466678888 5544643333 3455788999999999997644 334567776654 34443
Q ss_pred cCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 154 FNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 154 ~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
++.--||. +|- ++ .++++..++|||++++-=+
T Consensus 68 ~p~~~vGa-----------------------GTV-l~-------~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 68 LPGMILGV-----------------------GSI-VD-------AATAALYIQLGANFIVTPL 99 (222)
T ss_pred CCCeEEee-----------------------EeC-cC-------HHHHHHHHHcCCCEEECCC
Confidence 33222222 110 11 4566999999999999655
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=82.81 E-value=27 Score=35.58 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=60.1
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccc------cCChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDC 110 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~ 110 (299)
.+..++..++.- .|-+=+|+.... -+..+.|++-+++||++|+.+|.- ++..-- ... .+.+|++.+
T Consensus 12 ~~e~l~aAi~~G---ADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~-el~--~~~~~l~~l 85 (443)
T PRK15452 12 TLKNMRYAFAYG---ADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNA-KLK--TFIRDLEPV 85 (443)
T ss_pred CHHHHHHHHHCC---CCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHH-HHH--HHHHHHHHH
Confidence 555777667654 455555544322 344467999999999999988763 332211 112 688889999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 022296 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (299)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (299)
.++|+|+|=|+| .-+++.+++.
T Consensus 86 ~~~gvDgvIV~d----------~G~l~~~ke~ 107 (443)
T PRK15452 86 IAMKPDALIMSD----------PGLIMMVREH 107 (443)
T ss_pred HhCCCCEEEEcC----------HHHHHHHHHh
Confidence 999999999998 3566777775
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=82.64 E-value=12 Score=34.88 Aligned_cols=58 Identities=5% Similarity=-0.002 Sum_probs=34.2
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCCh--hHHHHHHHHHHhCCc------eecCCcHHHH
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK--PFIEEVVKRAHQHDV------YVSTGDWAEH 94 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~--~~l~eKI~l~~~~gV------~v~~GtlfE~ 94 (299)
++.+|-+|=+.-..++++.+.+.-+++|-+ +.| ..+.+-++..|++|+ -+.|+|-+|.
T Consensus 68 ~~~~DvHLMv~~P~~~i~~~~~aGad~It~----------H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~ 133 (228)
T PRK08091 68 HCFKDVHLMVRDQFEVAKACVAAGADIVTL----------QVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISL 133 (228)
T ss_pred CCCEEEEeccCCHHHHHHHHHHhCCCEEEE----------cccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHH
Confidence 345677774443445666666665555532 222 246777888888876 5567776553
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=82.57 E-value=22 Score=33.19 Aligned_cols=120 Identities=19% Similarity=0.149 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHH---HHHHHcCCCEEEecCCc-------------ccCChh
Q 022296 68 PKPFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYV---EDCKQVGFDTIELNVGS-------------LEIPEE 130 (299)
Q Consensus 68 p~~~l~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl---~~~k~lGF~~IEISdGt-------------i~i~~~ 130 (299)
|++++.+-+..+++... .+.-|+ +..++|+ +.|.+ +++.|||+-|+ +--.++
T Consensus 53 ~~~~i~~e~~~~~~~~~vivnv~~----------~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~ 121 (231)
T TIGR00736 53 FNSYIIEQIKKAESRALVSVNVRF----------VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKE 121 (231)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEec----------CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHH
Confidence 45777777777764443 233332 1222222 23333 79999999887 334677
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCc
Q 022296 131 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGAD 210 (299)
Q Consensus 131 ~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 210 (299)
.-.++++.+++.+ +| +.+|-... .+ .... ++.++...++||+
T Consensus 122 ~l~~iv~av~~~~---~P-VsvKiR~~-----~~--------------------------~~~~---~~~a~~l~~aGad 163 (231)
T TIGR00736 122 LLKEFLTKMKELN---KP-IFVKIRGN-----CI--------------------------PLDE---LIDALNLVDDGFD 163 (231)
T ss_pred HHHHHHHHHHcCC---Cc-EEEEeCCC-----CC--------------------------cchH---HHHHHHHHHcCCC
Confidence 7788888888653 33 77773321 00 1122 5667888999999
Q ss_pred EEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 211 MIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 211 ~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.|.|+++ |...+....+.|.++.+.+
T Consensus 164 ~i~Vd~~--~~g~~~a~~~~I~~i~~~~ 189 (231)
T TIGR00736 164 GIHVDAM--YPGKPYADMDLLKILSEEF 189 (231)
T ss_pred EEEEeeC--CCCCchhhHHHHHHHHHhc
Confidence 9999753 3322325667777776655
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >TIGR00587 nfo apurinic endonuclease (APN1) | Back alignment and domain information |
|---|
Probab=82.51 E-value=19 Score=33.62 Aligned_cols=148 Identities=11% Similarity=0.135 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
.+.+-++.++++|++++||--..=. ++.++..++.+.+.++++.+.+ +.+..+.. +. +.+|.+
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~Hapy~-iN---------las~~~ 80 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQI-VLVHAPYL-IN---------LASPDE 80 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcc-eeccCCee-ee---------cCCCCH
Confidence 5677788899999999999544433 4455554444556676665322 22211110 00 001111
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCc----ccHHHHHHHHhccCCCceEEec----
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADS----LRADIIAKVIGRLGLEKTMFEA---- 247 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~----~r~d~i~~ii~~l~~eklifEA---- 247 (299)
... ..+++.+ .+.++.+-+-||.+|.+..--..+...+ .-.+.+.++++...-=+|..|-
T Consensus 81 ~~r---------~~sv~~~---~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~ 148 (274)
T TIGR00587 81 EKE---------EKSLDVL---DEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQ 148 (274)
T ss_pred HHH---------HHHHHHH---HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCC
Confidence 001 1224555 5555666677999999887322222100 0112233344322223588883
Q ss_pred -----CCchhHHHHHHHhC--CCcccccCCCC
Q 022296 248 -----TNPRTSEWFIRRYG--PKVNLFVDHSQ 272 (299)
Q Consensus 248 -----P~k~qQ~~fI~~fG--~~VNLgI~~~e 272 (299)
..+++-..+++.++ +++-+.+|...
T Consensus 149 ~~~l~~~~~el~~ll~~~~~~~~lg~~lDt~H 180 (274)
T TIGR00587 149 GSELGRSFEELAYIIKVIVDKRRIGVCLDTCH 180 (274)
T ss_pred CCccCCCHHHHHHHHHhcCCCCceEEEEEhhh
Confidence 25566789999998 34433344443
|
All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=82.50 E-value=4 Score=38.12 Aligned_cols=128 Identities=20% Similarity=0.320 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHH
Q 022296 69 KPFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLV 139 (299)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~ 139 (299)
.+.+..-=++++.-++++.- + ||-. .|..+.+-++...+.|.-.|-|-|.- --+|.++.+.=|+.+
T Consensus 55 ~e~~~~~~~I~~~~~iPv~vD~d~GyG~-----~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa 129 (238)
T PF13714_consen 55 TEMLAAVRRIARAVSIPVIVDADTGYGN-----DPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAA 129 (238)
T ss_dssp HHHHHHHHHHHHHSSSEEEEE-TTTSSS-----SHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcEEEEcccccCc-----hhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHH
Confidence 34455555566777888875 2 3422 12256667788889999999999881 135888888888877
Q ss_pred HHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccc
Q 022296 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDV 219 (299)
Q Consensus 140 ~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi 219 (299)
++.- -.+.|-+ ... -| +++. .. ...++. |++++...+||||.|.+++-
T Consensus 130 ~~a~--~~~~~~I---~AR----TD----a~~~-----~~---------~~~dea---I~R~~aY~eAGAD~ifi~~~-- 177 (238)
T PF13714_consen 130 VDAR--RDPDFVI---IAR----TD----AFLR-----AE---------EGLDEA---IERAKAYAEAGADMIFIPGL-- 177 (238)
T ss_dssp HHHH--SSTTSEE---EEE----EC----HHCH-----HH---------HHHHHH---HHHHHHHHHTT-SEEEETTS--
T ss_pred HHhc--cCCeEEE---EEe----cc----cccc-----CC---------CCHHHH---HHHHHHHHHcCCCEEEeCCC--
Confidence 7620 0011222 000 11 0000 00 125667 99999999999999999975
Q ss_pred ccCCCcccHHHHHHHHhccC
Q 022296 220 CKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 220 ~d~~G~~r~d~i~~ii~~l~ 239 (299)
...+.++++.+.++
T Consensus 178 ------~~~~~i~~~~~~~~ 191 (238)
T PF13714_consen 178 ------QSEEEIERIVKAVD 191 (238)
T ss_dssp ------SSHHHHHHHHHHHS
T ss_pred ------CCHHHHHHHHHhcC
Confidence 34566888888887
|
... |
| >PRK12677 xylose isomerase; Provisional | Back alignment and domain information |
|---|
Probab=82.48 E-value=6.3 Score=39.18 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhH----HHHHHHHHHHcCCccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEET----LLRYVRLVKSAGLKAK 147 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~----r~~lI~~~~~~G~~v~ 147 (299)
.+.+.++.++++||++||+.+..+ ..+..+ ..++-+.+++.|++|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVP 84 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeE
Confidence 578889999999999999986543 223332 4566777788899854
|
|
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=82.46 E-value=14 Score=35.00 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=72.8
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcccccCChhHHHHHHHHHHhCCc--eecCCcHHHHHHHh--CCchHHHHHHHHHHc
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIRN--GPSAFKEYVEDCKQV 113 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~GtlfE~a~~q--g~~~~~~yl~~~k~l 113 (299)
.+..+.+.++.+-+ =++-+-|..|.....+.+.+.+.++..++++. .++.=+-.|+.+.. ..-..++.++..|+.
T Consensus 37 s~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeA 116 (309)
T TIGR00423 37 SLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKA 116 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 44454444443222 24666667777766777889999999998853 33333666765322 111358999999999
Q ss_pred CCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 022296 114 GFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 114 GF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
|.+.+- ++.-+. ..+.+++.+.|+.+++.|+++.+
T Consensus 117 Gl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 117 GLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred CCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 999772 321111 35788999999999999988775
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=82.44 E-value=8.7 Score=39.42 Aligned_cols=120 Identities=23% Similarity=0.286 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCC--ccch----hhhhhhHHHHHHHHH
Q 022296 133 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNP--EIEV----GVGINKSRRAERCLE 206 (299)
Q Consensus 133 ~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~i~~~~~dLe 206 (299)
+-+++.++++|++|.| |.+ |+ | ||.|. +. +.+++.. .+++ ++. |++.-..=.
T Consensus 19 ~glm~aL~~rg~~Vqp-fKv-------GP--D-----YIDP~-~H---~~atG~~srNLD~~mm~~~~---v~~~f~~~~ 76 (451)
T COG1797 19 LGLMRALRRRGLKVQP-FKV-------GP--D-----YIDPG-YH---TAATGRPSRNLDSWMMGEEG---VRALFARAA 76 (451)
T ss_pred HHHHHHHHhcCCcccc-ccc-------CC--C-----ccCch-hh---hHhhCCccCCCchhhcCHHH---HHHHHHHhc
Confidence 3588999999999988 544 11 1 33332 10 0111111 1111 233 555555556
Q ss_pred ccCcEEEEec-cccccCCCc-ccHHHHHHHHhccC-CCceEEecCCchh----HHHHHHHhCCCcccc-cCCCCch
Q 022296 207 AGADMIMIDS-DDVCKHADS-LRADIIAKVIGRLG-LEKTMFEATNPRT----SEWFIRRYGPKVNLF-VDHSQVM 274 (299)
Q Consensus 207 AGA~~VIiEa-rgi~d~~G~-~r~d~i~~ii~~l~-~eklifEAP~k~q----Q~~fI~~fG~~VNLg-I~~~eVi 274 (299)
++||..|||+ .|+||..+. ..+.--+.+++.++ +=-++.-+....+ .++=++.|-|+||+. |=.+.|-
T Consensus 77 ~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrVg 152 (451)
T COG1797 77 ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNRVG 152 (451)
T ss_pred CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 7889999999 599999321 11222344444455 3335556665555 345568999999995 6555443
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=82.24 E-value=16 Score=39.44 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=85.6
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+.+++.+|-|+|=+-...+ +.++..++++.+++.||.|+-|++-
T Consensus 126 I~ea~~~GADavLLI~~~L--~~~~l~~l~~~a~~lGme~LvEvh~---------------------------------- 169 (695)
T PRK13802 126 IWEARAHGADLVLLIVAAL--DDAQLKHLLDLAHELGMTVLVETHT---------------------------------- 169 (695)
T ss_pred HHHHHHcCCCEeehhHhhc--CHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 6789999999999887776 4788999999999999999998865
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKV 264 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ekl-ifEAP~k-~qQ~~fI~~fG~~V 264 (299)
.+++ ++.+++||..|-|-.|.+-.- ++..+.-.+|+..+|-+.+ |-|.=-+ ..+...+.+.|.|-
T Consensus 170 ----~~el-------~~a~~~ga~iiGINnRdL~tf--~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~da 236 (695)
T PRK13802 170 ----REEI-------ERAIAAGAKVIGINARNLKDL--KVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADA 236 (695)
T ss_pred ----HHHH-------HHHHhCCCCEEEEeCCCCccc--eeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCE
Confidence 1233 778999999999999977443 4446667778888886655 4455433 46777788888776
Q ss_pred cc
Q 022296 265 NL 266 (299)
Q Consensus 265 NL 266 (299)
=|
T Consensus 237 vL 238 (695)
T PRK13802 237 VL 238 (695)
T ss_pred EE
Confidence 55
|
|
| >PRK09997 hydroxypyruvate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=82.16 E-value=1.9 Score=39.34 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=35.3
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
++.+. .+++.++.+++.||+.||+.. ... .+..++-+.+++.|+++..
T Consensus 11 ~~~~~--~l~~~l~~~a~~Gf~~VEl~~-~~~---~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 11 LFGEY--DFLARFEKAAQCGFRGVEFMF-PYD---YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hccCC--CHHHHHHHHHHhCCCEEEEcC-CCC---CCHHHHHHHHHHcCCcEEE
Confidence 44555 799999999999999999954 222 2445666677789999743
|
|
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=82.05 E-value=3.4 Score=36.16 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCEEEecCCcc-----------------cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 022296 105 EYVEDCKQVGFDTIELNVGSL-----------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 153 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti-----------------~i-----~~~~r~~lI~~~~~~G~~v~~E~gvK 153 (299)
+-+.+++++||++|.++-=+- .+ +.++..++|+.++++|++|.-.+-..
T Consensus 23 ~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 23 EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 335577889999998764211 11 23889999999999999999998774
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=81.56 E-value=27 Score=34.06 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=18.7
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
+++. ++.++..-++|+|+|-|=++
T Consensus 226 ~~e~---~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 226 VQDY---VQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred HHHH---HHHHHHHHHcCCCEEEeCCC
Confidence 5666 77777777899999998554
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=81.53 E-value=4.1 Score=38.87 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=54.3
Q ss_pred chhHHHHHHHhhcccccEEE---eeCccc----ccCChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCchHHHHHHH
Q 022296 39 SHNVLEDIFESMGQFVDGLK---FSGGSH----SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVED 109 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lK---fg~GTs----~l~p~~~l~eKI~l~~~~gV~v~~-Gt-lfE~a~~qg~~~~~~yl~~ 109 (299)
.+..++..++..+.|---.| +..-|- .+|+.+.|++.-++||+|||+++- |. ++|.+...+ ..+.+|.
T Consensus 107 ~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~~~~e~~-- 183 (290)
T PF01212_consen 107 TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALG-VSLAEIA-- 183 (290)
T ss_dssp -HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-HHHHHHH--
T ss_pred CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-ccHHHHh--
Confidence 78899999999886444444 333333 378889999999999999999999 75 999885444 2344444
Q ss_pred HHHcCCCEEEecC
Q 022296 110 CKQVGFDTIELNV 122 (299)
Q Consensus 110 ~k~lGF~~IEISd 122 (299)
-+||.+=||-
T Consensus 184 ---~~~D~v~~~~ 193 (290)
T PF01212_consen 184 ---AGADSVSFGG 193 (290)
T ss_dssp ---TTSSEEEEET
T ss_pred ---hhCCEEEEEE
Confidence 7899999884
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=81.47 E-value=13 Score=39.45 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=74.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccch
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~ 180 (299)
+-++.|++.+.+.|+|.+-|-|..-+++.-.. .|+.+++.|..+..-+-.. .| |
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~--~i~~~k~~G~~~~~~i~yt--~s---------------p------- 149 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDALNDARNLKV--AIDAIKSHKKHAQGAICYT--TS---------------P------- 149 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccCcchHHHHH--HHHHHHHcCCEEEEEEEec--CC---------------C-------
Confidence 36888999999999999999998888877765 8999999998765442221 11 1
Q ss_pred hcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 181 LFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
-.+++.+ ++.++.-.++||+.|- |.|..|-.....+.+++..+
T Consensus 150 -------~~t~e~~---~~~ak~l~~~Gad~I~-----IkDtaG~l~P~~v~~lv~al 192 (596)
T PRK14042 150 -------VHTLDNF---LELGKKLAEMGCDSIA-----IKDMAGLLTPTVTVELYAGL 192 (596)
T ss_pred -------CCCHHHH---HHHHHHHHHcCCCEEE-----eCCcccCCCHHHHHHHHHHH
Confidence 0226778 8889999999998764 67888888888777777654
|
|
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=81.47 E-value=20 Score=29.41 Aligned_cols=99 Identities=21% Similarity=0.375 Sum_probs=73.4
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC--Ccee--cC-CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (299)
..+...+....++..+=|++|...+.+ .+.+.++.+++. ++.+ .+ |..+ + ++.++.+.+.|++
T Consensus 33 ~~~~~~~~~~~~~~~i~~~ggep~~~~--~~~~~i~~~~~~~~~~~~~i~T~~~~~------~----~~~~~~l~~~g~~ 100 (204)
T cd01335 33 ILDIVLEAKERGVEVVILTGGEPLLYP--ELAELLRRLKKELPGFEISIETNGTLL------T----EELLKELKELGLD 100 (204)
T ss_pred HHHHHHHHHhcCceEEEEeCCcCCccH--hHHHHHHHHHhhCCCceEEEEcCcccC------C----HHHHHHHHhCCCc
Confidence 344455556677888889999999988 788999999988 5544 44 2222 2 5677888888999
Q ss_pred EEEecCCccc-----------CChhHHHHHHHHHHHcCCcccceeee
Q 022296 117 TIELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 117 ~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.|.+|--+.+ .+.++..+.|+++++.|..+.+.+-+
T Consensus 101 ~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 147 (204)
T cd01335 101 GVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLV 147 (204)
T ss_pred eEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 9999877653 34478888999999988887776655
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=81.22 E-value=17 Score=37.85 Aligned_cols=119 Identities=16% Similarity=0.162 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022296 73 EEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 73 ~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
.+-+++++++|..|..+ .||+ +++.+|+.+.++++.+.+.|-+.|=|.|-.--+.+.+-.++|+.++++ +. .+.+
T Consensus 125 ~~~v~~ak~~g~~V~~~~e~f~D-~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~-~~-~~~i 201 (526)
T TIGR00977 125 YDTVAYLKRQGDEVIYDAEHFFD-GYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS-LK-QPQL 201 (526)
T ss_pred HHHHHHHHHcCCeEEEEeeeeee-cccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh-CC-CCEE
Confidence 45588999999987643 3533 334566789999999999999999999998888999999999999874 22 2346
Q ss_pred eeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccH
Q 022296 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRA 228 (299)
Q Consensus 151 gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~ 228 (299)
++.+.. | .... +-.....++|||+. ||+- ||=+..||..-
T Consensus 202 ~vH~HN-------D--------------------------~GlA---vANslaAv~AGA~~--Vd~TinGiGERaGNa~L 243 (526)
T TIGR00977 202 GIHAHN-------D--------------------------SGTA---VANSLLAVEAGATM--VQGTINGYGERCGNANL 243 (526)
T ss_pred EEEECC-------C--------------------------CChH---HHHHHHHHHhCCCE--EEEecccccCccCCCcH
Confidence 664321 1 2233 55667899999997 5664 88888888765
Q ss_pred HHHH
Q 022296 229 DIIA 232 (299)
Q Consensus 229 d~i~ 232 (299)
..+.
T Consensus 244 e~v~ 247 (526)
T TIGR00977 244 CSLI 247 (526)
T ss_pred HHHH
Confidence 5443
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=81.18 E-value=23 Score=33.92 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=99.3
Q ss_pred HHHHHHhh-cccccEEEeeCcccccCChh-----------HHHHHHHHHHhCCcee-cCC-c--H-HHHHHHhCCchHHH
Q 022296 43 LEDIFESM-GQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYV-STG-D--W-AEHLIRNGPSAFKE 105 (299)
Q Consensus 43 l~DlLe~a-g~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v-~~G-t--l-fE~a~~qg~~~~~~ 105 (299)
++.-+++. |-=.+.+.+-..+|-.+.+. .+++-+++++++|..+ +++ + | .|.+-.-+++.+.+
T Consensus 81 ie~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~ 160 (284)
T cd07942 81 IERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALE 160 (284)
T ss_pred HHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHH
Confidence 44445442 22223566666666444332 3667888999998741 111 0 1 23343445567888
Q ss_pred HHHHHHHc---C---CCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 106 YVEDCKQV---G---FDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 106 yl~~~k~l---G---F~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
+++.+.+. | .+.|-++|-.--..+.+-.++|+.+++. +-....++++.+.. |
T Consensus 161 ~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hn-------d-------------- 219 (284)
T cd07942 161 VCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHN-------D-------------- 219 (284)
T ss_pred HHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecC-------C--------------
Confidence 88888887 5 4488899999888888888999998873 11112235553221 1
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+-..++|||+.| ++- |+=...||.-.+.+-..+...+
T Consensus 220 ------------~G~a---~AN~laA~~aG~~~i--d~~~~g~GeRaGN~~~E~lv~~l~~~g 265 (284)
T cd07942 220 ------------RGTG---VAAAELALLAGADRV--EGTLFGNGERTGNVDLVTLALNLYSQG 265 (284)
T ss_pred ------------CchH---HHHHHHHHHhCCCEE--EeeCccCCccccchhHHHHHHHHHhcC
Confidence 2334 667788999999985 554 7755589988887766665444
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=81.09 E-value=7.6 Score=37.68 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=79.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhccccc-EEEeeCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHH-HhC--
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVD-GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLI-RNG-- 99 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID-~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~-~qg-- 99 (299)
|.-++-|-+....+..++++++..-.++. ...+ |.-..|...-.++++.++++|| .++-| ++=+..+ .-|
T Consensus 54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~ 130 (350)
T PRK08446 54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEI---TTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRI 130 (350)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCceE---EEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 56666665533378889999999887721 1222 2234465566899999999999 88888 6755444 223
Q ss_pred --CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 100 --PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 100 --~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
.+.+.+-++.+++.||+.| -+-=|.-.-+.+++.+-++.+.+.|..
T Consensus 131 ~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 131 HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 1245556778889999854 555555566778888889998887654
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=81.05 E-value=13 Score=42.14 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.+++|++.+.+.|+|.+-|.|..-++ +.....|+.+++.|..+...++.. .++ -| |+. .
T Consensus 628 v~~~~i~~a~~~Gid~~rifd~lnd~--~~~~~~i~~vk~~g~~~~~~i~yt---g~~---~d--------~~~--~--- 686 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFDSLNWV--ENMRVAIDAVRETGKIAEAAICYT---GDI---LD--------PAR--A--- 686 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCChH--HHHHHHHHHHHHcCCeEEEEEEEE---ecC---CC--------CCC--C---
Confidence 57789999999999999999988886 446678999999988655445442 011 11 110 0
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.++.-.++||+.|- |.|..|-+....+.++++.+
T Consensus 687 ------~~~~~~~---~~~a~~l~~~Ga~~i~-----ikDt~G~l~P~~~~~lv~~l 729 (1146)
T PRK12999 687 ------KYDLDYY---VDLAKELEKAGAHILA-----IKDMAGLLKPAAAYELVSAL 729 (1146)
T ss_pred ------CCCHHHH---HHHHHHHHHcCCCEEE-----ECCccCCCCHHHHHHHHHHH
Confidence 0236777 8888999999999664 67788888888777777654
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=80.68 E-value=26 Score=33.33 Aligned_cols=112 Identities=17% Similarity=0.298 Sum_probs=74.4
Q ss_pred cCCCCCCcchhHHHHHHHhhcc-cccEEEeeCccc-ccCChhHHHHH-----------------HHHHH--hCCceecCC
Q 022296 31 SPHYTLSSSHNVLEDIFESMGQ-FVDGLKFSGGSH-SLMPKPFIEEV-----------------VKRAH--QHDVYVSTG 89 (299)
Q Consensus 31 DkGl~~~~g~~~l~DlLe~ag~-yID~lKfg~GTs-~l~p~~~l~eK-----------------I~l~~--~~gV~v~~G 89 (299)
=-|| |.+..+.+++..+-+ -+|++=+|+=.| .+.+-..+++- ++-.+ ..++++..=
T Consensus 17 taG~---P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm 93 (259)
T PF00290_consen 17 TAGY---PDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLM 93 (259)
T ss_dssp ETTS---SSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEE
T ss_pred eCCC---CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEE
Confidence 3455 366777777777666 899999997543 12222222222 22222 344555555
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
|++...+..| +++|++.|++.|++.+=| -+||.|+...+.+.++++|+...+=+..
T Consensus 94 ~Y~N~i~~~G---~e~F~~~~~~aGvdGlIi----pDLP~ee~~~~~~~~~~~gl~~I~lv~p 149 (259)
T PF00290_consen 94 TYYNPIFQYG---IERFFKEAKEAGVDGLII----PDLPPEESEELREAAKKHGLDLIPLVAP 149 (259)
T ss_dssp E-HHHHHHH----HHHHHHHHHHHTEEEEEE----TTSBGGGHHHHHHHHHHTT-EEEEEEET
T ss_pred eeccHHhccc---hHHHHHHHHHcCCCEEEE----cCCChHHHHHHHHHHHHcCCeEEEEECC
Confidence 7888888886 999999999999998877 4688899999999999998886664443
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=80.38 E-value=57 Score=31.34 Aligned_cols=134 Identities=16% Similarity=0.258 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
+.+..|-+.||+.|=+....+++.+-- =.++++.++..|.-|--|+|.=-+ ..|.. ... ...+|
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g------~e~~~------~~~-~~~~T- 148 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGG------EEDGV------VGD-EGLLT- 148 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecC------ccCCc------ccc-cccCC-
Confidence 556677899999999986665443322 246788899999999999998321 11110 000 01111
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHc-cCcEEEEec---cccccC-CCcccHHHHHHHHhccCCCceEEecC-Cc-hhHHH
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEA-GADMIMIDS---DDVCKH-ADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEW 255 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeA-GA~~VIiEa---rgi~d~-~G~~r~d~i~~ii~~l~~eklifEAP-~k-~qQ~~ 255 (299)
+|++. +++.+. |+|.+-+=- -|+|.. .-+++.+++.+|-+.++.--++==+. .+ +|...
T Consensus 149 -------~pe~a-------~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ 214 (276)
T cd00947 149 -------DPEEA-------EEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRK 214 (276)
T ss_pred -------CHHHH-------HHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHH
Confidence 24444 777764 999876643 389988 77899999999998775333333332 23 33344
Q ss_pred HHHHhC-CCcccc
Q 022296 256 FIRRYG-PKVNLF 267 (299)
Q Consensus 256 fI~~fG-~~VNLg 267 (299)
.|+ +| .+||++
T Consensus 215 ai~-~Gi~KiNi~ 226 (276)
T cd00947 215 AIK-LGVCKININ 226 (276)
T ss_pred HHH-cCCeEEEeC
Confidence 444 44 457775
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >smart00481 POLIIIAc DNA polymerase alpha chain like domain | Back alignment and domain information |
|---|
Probab=80.23 E-value=4 Score=29.77 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
...++|++.|++.|+++|=|+|=.---.. .++-+.+++.|++|+|
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 47899999999999999999997622222 3455666678988876
|
DNA polymerase alpha chain like domain, incl. family of hypothetical proteins |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=80.11 E-value=22 Score=34.53 Aligned_cols=21 Identities=24% Similarity=0.080 Sum_probs=16.9
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEE
Q 022296 191 VGVGINKSRRAERCLEAGADMIMI 214 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIi 214 (299)
.++. ++.++..-++|+|+|-+
T Consensus 223 ~~e~---~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 223 WEEV---VALAKALEAAGADILNT 243 (353)
T ss_pred HHHH---HHHHHHHHHcCCCEEEe
Confidence 5666 77777777899999988
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=80.09 E-value=23 Score=32.79 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHH
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVI 235 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii 235 (299)
.+.++...+||||.+++ |+.||.++ + ..+.++++-
T Consensus 182 ~eti~~l~~aGaDi~V~-GSaiF~~~-d-~~~~~~~lr 216 (223)
T PRK08745 182 ADNIGAIAAAGADTFVA-GSAIFNAP-D-YAQVIAQMR 216 (223)
T ss_pred HHHHHHHHHcCCCEEEE-ChhhhCCC-C-HHHHHHHHH
Confidence 44568899999998888 56799754 3 344455443
|
|
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=80.06 E-value=53 Score=30.78 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=101.8
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCC----hhHHHHHHHHHHhCCceecCC--c--HH-
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVSTG--D--WA- 92 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p----~~~l~eKI~l~~~~gV~v~~G--t--lf- 92 (299)
+..|+.-++.+|. .+...+..++.+..|=+ +..+.|-+.-+- ++.+++..+++++..| +.-| | +.
T Consensus 25 ~~~gv~~~i~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~~-vaIGEiGLDy~~ 98 (258)
T PRK10425 25 FAAGVNGMLITGT----NLRESQQAQKLARQYPS-CWSTAGVHPHDSSQWQAATEEAIIELAAQPEV-VAIGECGLDFNR 98 (258)
T ss_pred HHCCCCEEEEeCC----CHHHHHHHHHHHHhCCC-EEEEEEeCcCccccCCHHHHHHHHHhccCCCE-EEEeeeeecccc
Confidence 3558889999999 56689999999988854 888888876442 3334444444443332 2334 2 22
Q ss_pred --H-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022296 93 --E-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (299)
Q Consensus 93 --E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~ 169 (299)
+ ...++. -|+..++.|++++...+==|-+.. + ++++.+++..-+ .+. ++-...+ +
T Consensus 99 ~~~~~~~Q~~--vF~~ql~lA~~~~~Pv~iH~r~a~----~---~~l~iL~~~~~~-~~~-~i~H~fs-----G------ 156 (258)
T PRK10425 99 NFSTPEEQER--AFVAQLAIAAELNMPVFMHCRDAH----E---RFMALLEPWLDK-LPG-AVLHCFT-----G------ 156 (258)
T ss_pred CCCCHHHHHH--HHHHHHHHHHHhCCCeEEEEeCch----H---HHHHHHHHhccC-CCC-eEEEecC-----C------
Confidence 1 112333 799999999999998874444332 3 344444442101 111 2211111 1
Q ss_pred cccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCC
Q 022296 170 YVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 249 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~ 249 (299)
+ .+.+++.++.|.+.=+- --++... +...+.++++.+|+++|+.|...
T Consensus 157 ------------------~---------~~~~~~~l~~G~~~si~--g~i~~~~---~~~~~~~~~~~ipldrlLlETDa 204 (258)
T PRK10425 157 ------------------T---------REEMQACLARGLYIGIT--GWVCDER---RGLELRELLPLIPAERLLLETDA 204 (258)
T ss_pred ------------------C---------HHHHHHHHHCCCEEEEC--ceeeccc---ccHHHHHHHHhCChHHEEEeccC
Confidence 1 44568899999776441 1122211 34467788899999999999876
Q ss_pred ch
Q 022296 250 PR 251 (299)
Q Consensus 250 k~ 251 (299)
|-
T Consensus 205 P~ 206 (258)
T PRK10425 205 PY 206 (258)
T ss_pred CC
Confidence 53
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 299 | ||||
| 1qwg_A | 251 | Crystal Structure Of Methanococcus Jannaschii Phosp | 2e-06 |
| >pdb|1QWG|A Chain A, Crystal Structure Of Methanococcus Jannaschii Phosphosulfolactate Synthase Length = 251 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 299 | |||
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 1e-73 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 2e-63 |
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 Length = 251 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 1e-73
Identities = 52/283 (18%), Positives = 106/283 (37%), Gaps = 49/283 (17%)
Query: 16 DRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75
+ + + G+T + +ED + G ++D +KF G+ +++ + ++E
Sbjct: 5 EFLYEDFQRGLTVVLDKGLPPKF----VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEK 60
Query: 76 VKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+ + V G E+ G F E++ +C+++GF+ +E++ GS +I E
Sbjct: 61 INYYKDWGIKVYPGGTLFEYAYSKG--KFDEFLNECEKLGFEAVEISDGSSDISLEERNN 118
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVG 194
++ K G + D D
Sbjct: 119 AIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDR---------------------------- 150
Query: 195 INKSRRAERCLEAGADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEAT 248
+ L+AGAD ++I+ + + ++ + + + + + K +FEA
Sbjct: 151 ---IKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAP 207
Query: 249 NPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLR----GRNLGK 286
FI ++G VNL + +V+ LE LR G GK
Sbjct: 208 QKSQQVAFILKFGSSVNLANIAFDEVISLETLRRGLRGDTFGK 250
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 Length = 276 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 2e-63
Identities = 53/273 (19%), Positives = 95/273 (34%), Gaps = 48/273 (17%)
Query: 16 DRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75
R KPR G + + Y L +D ++D +KF G+ L +EE
Sbjct: 32 VRTNKPRETGQSILIDNGYPL----QFFKDAIAGASDYIDFVKFGWGTSLLTKD--LEEK 85
Query: 76 VKRAHQHDVYVSTGDW-AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+ +HD+ G E + E+ C G + IE++ G+L + +
Sbjct: 86 ISTLKEHDITFFFGGTLFEKYVSQK--KVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAA 143
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVG 194
Y+ L G+ A
Sbjct: 144 YIADFSDEFLVLS------------------EVGSKDAELASRQSSEEWL---------- 175
Query: 195 INKSRRAERCLEAGADMIMIDSDD-----VCKHADSLRADIIAKVIGR-LGLEKTMFEAT 248
+EAGA+ ++ ++ + +C + +R I+ +I + + + +FEA
Sbjct: 176 ----EYIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAP 231
Query: 249 NPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLR 280
N + FI++ GP VNL + + LE LR
Sbjct: 232 NKTLQQGFIQKIGPNVNLANIPFHDAIALETLR 264
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 299 | |||
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 100.0 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 100.0 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 96.1 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 95.93 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 95.61 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 95.58 | |
| 3qc0_A | 275 | Sugar isomerase; TIM barrel, structural genomics, | 95.54 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 95.44 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 95.39 | |
| 3cqj_A | 295 | L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre | 95.26 | |
| 1yx1_A | 264 | Hypothetical protein PA2260; structural genomics, | 95.21 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 95.19 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 94.95 | |
| 2q02_A | 272 | Putative cytoplasmic protein; structural genomics, | 94.93 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 94.82 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 94.63 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 94.61 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 94.27 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 94.14 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 94.05 | |
| 2x7v_A | 287 | Probable endonuclease 4; DNA repair protein, metal | 93.89 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 93.84 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 93.84 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 93.83 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 93.79 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 93.57 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 93.47 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 93.32 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 93.25 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 93.04 | |
| 3aal_A | 303 | Probable endonuclease 4; endoiv, DNA repair, base | 93.03 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 92.99 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 92.74 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 92.65 | |
| 3aam_A | 270 | Endonuclease IV, endoiv; DNA repair, base excision | 92.56 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 92.5 | |
| 2zvr_A | 290 | Uncharacterized protein TM_0416; hyperthermophIle, | 92.43 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 92.37 | |
| 3vni_A | 294 | Xylose isomerase domain protein TIM barrel; D-psic | 92.33 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 92.21 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 92.11 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 92.06 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 92.03 | |
| 1qtw_A | 285 | Endonuclease IV; DNA repair enzyme, TIM barrel, tr | 91.93 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 91.88 | |
| 2g0w_A | 296 | LMO2234 protein; putative sugar isomerase, structu | 91.85 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 91.82 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 91.81 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 91.79 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 91.77 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 91.53 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 91.45 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 91.33 | |
| 3ngf_A | 269 | AP endonuclease, family 2; structural genomics, se | 91.3 | |
| 3obe_A | 305 | Sugar phosphate isomerase/epimerase; structural ge | 91.23 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 91.16 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 91.14 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 91.1 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 90.98 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 90.79 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 90.72 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 90.64 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 90.64 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 90.43 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 90.21 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 90.16 | |
| 2qul_A | 290 | D-tagatose 3-epimerase; beta/alpha barrel, isomera | 89.98 | |
| 2qw5_A | 335 | Xylose isomerase-like TIM barrel; putative sugar p | 89.95 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 89.81 | |
| 1i60_A | 278 | IOLI protein; beta barrel, structural genomics, PS | 89.71 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 89.49 | |
| 3ktc_A | 333 | Xylose isomerase; putative sugar isomerase, struct | 89.48 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 89.42 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 89.33 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 89.33 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 89.32 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 89.1 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 89.0 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 88.98 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 88.97 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 88.94 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 88.94 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 88.88 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 88.85 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 88.52 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 88.32 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 88.17 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 87.55 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 87.53 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 87.47 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 87.21 | |
| 3dx5_A | 286 | Uncharacterized protein ASBF; beta-alpha barrel, p | 87.19 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 87.09 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 87.07 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 87.04 | |
| 3u0h_A | 281 | Xylose isomerase domain protein; structural genomi | 87.01 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 86.95 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 86.92 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 86.88 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 86.84 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 86.64 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 86.57 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 86.45 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 86.4 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 86.38 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 86.34 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 86.1 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 86.03 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 86.03 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 86.03 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 85.95 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 85.87 | |
| 2zds_A | 340 | Putative DNA-binding protein; TIM-barrel fold, str | 85.85 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 85.72 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 85.69 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 85.66 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 85.66 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 85.51 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 85.44 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 85.36 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 85.2 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 85.14 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 85.12 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 85.08 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 84.97 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 84.9 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 84.72 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 84.6 | |
| 3cny_A | 301 | Inositol catabolism protein IOLE; xylose isomerase | 84.57 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 84.54 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 84.53 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 84.5 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 84.37 | |
| 2vtf_A | 626 | Endo-beta-N-acetylglucosaminidase; hydrolase, fami | 84.36 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 84.24 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 84.12 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 83.7 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 83.69 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 83.58 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 83.44 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 83.43 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 83.24 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 83.19 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 83.13 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 83.05 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 82.84 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 82.7 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 82.69 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 82.62 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 82.57 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 82.24 | |
| 2hk0_A | 309 | D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00 | 81.95 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 81.9 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 81.76 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 81.63 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 81.61 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 81.53 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 81.4 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 81.39 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 81.11 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 81.05 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 81.0 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 80.85 | |
| 1xim_A | 393 | D-xylose isomerase; isomerase(intramolecular oxido | 80.82 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 80.64 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 80.38 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 80.35 | |
| 3l23_A | 303 | Sugar phosphate isomerase/epimerase; structural ge | 80.33 |
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-92 Score=648.52 Aligned_cols=233 Identities=21% Similarity=0.391 Sum_probs=222.1
Q ss_pred CCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHH
Q 022296 19 EKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIR 97 (299)
Q Consensus 19 ~KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~ 97 (299)
+|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||++.|++||++||+|||+|||| ||||+|+.
T Consensus 8 ~KPR~~GlT~v~dkgl----g~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~ 83 (251)
T 1qwg_A 8 YEDFQRGLTVVLDKGL----PPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYS 83 (251)
T ss_dssp CCCCCCCCEEEEESSC----CHHHHHHHHHHHGGGCSEEEECTTGGGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred CCCcccCeeEEecCCC----CHHHHHHHHHHhhhhcceEEecCceeeecCHHHHHHHHHHHHHcCCeEECCcHHHHHHHH
Confidence 9999999999999998 888999999999999999999999999999999999999999999999998 59999999
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
|| ++++|+++||++||++|||||||++||+++|+++|+++++.||+|+||+|+|++.. +
T Consensus 84 qg--~~~~yl~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~------~------------- 142 (251)
T 1qwg_A 84 KG--KFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDK------D------------- 142 (251)
T ss_dssp TT--CHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHH------H-------------
T ss_pred cC--cHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCEEeeeccccCCcc------c-------------
Confidence 99 99999999999999999999999999999999999999999999999999986621 1
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc------ccccCCCcccHHHHHHHHhccCCCceEEecCCch
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 251 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar------gi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~ 251 (299)
..++++++ |+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||||+|+
T Consensus 143 ---------~~~~~~~~---I~~~~~~LeAGA~~ViiEarEsG~~iGi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~ 210 (251)
T 1qwg_A 143 ---------KQLTIDDR---IKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKS 210 (251)
T ss_dssp ---------TTCCHHHH---HHHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEECCSHH
T ss_pred ---------CCCCHHHH---HHHHHHHHHCCCcEEEEeeecccCCcccCCCCCCCcHHHHHHHHHhCChhhEEEECCChH
Confidence 01348888 99999999999999999998 9999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCCcc
Q 022296 252 TSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 288 (299)
Q Consensus 252 qQ~~fI~~fG~~VNLg-I~~~eVi~LE~LR~~~~G~~~ 288 (299)
||+|||++|||||||| |+|+||++|||||+|+||.+.
T Consensus 211 qq~~fI~~fG~~VNLgNI~~~eVi~LE~LR~GLrgDT~ 248 (251)
T 1qwg_A 211 QQVAFILKFGSSVNLANIAFDEVISLETLRRGLRGDTF 248 (251)
T ss_dssp HHHHHHHHHCTTCCEEEEEGGGHHHHHHHHHTCSGGGT
T ss_pred HHHHHHHHhCCCccccCCCHHHHHHHHHHHcccccccc
Confidence 9999999999999998 999999999999999988654
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-91 Score=647.19 Aligned_cols=241 Identities=21% Similarity=0.353 Sum_probs=210.9
Q ss_pred cccCC-CCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCcee
Q 022296 8 WKSFD-EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (299)
Q Consensus 8 ~~~f~-~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v 86 (299)
|+.|. ++|.|++|||.+|+|||+|||+ |+++++|+|++||+|||++||||||++|||+ |++||++||+|||+|
T Consensus 23 m~~~~f~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~DlLe~ag~yID~lKfg~GTs~l~~~--l~ekI~l~~~~gV~v 96 (276)
T 1u83_A 23 MNDFSLELPVRTNKPRETGQSILIDNGY----PLQFFKDAIAGASDYIDFVKFGWGTSLLTKD--LEEKISTLKEHDITF 96 (276)
T ss_dssp --CCCCCCCCCCCSSCSSSCEEEEESSC----CHHHHHHHHHHHGGGCCEEEECTTGGGGCTT--HHHHHHHHHHTTCEE
T ss_pred cccccCCCCCcCCCCcccCceEEecCCC----CHHHHHHHHHHhhhhcceEEecCcchhhhHH--HHHHHHHHHHcCCeE
Confidence 44555 3699999999999999999998 8889999999999999999999999999997 999999999999999
Q ss_pred cCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc
Q 022296 87 STG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR 165 (299)
Q Consensus 87 ~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~ 165 (299)
||| ||||+|+.|| ++++|+++||++||++|||||||++||+++|+++|+++++. |+|+||+|+|++.. +.
T Consensus 97 ~~GGTlfE~~l~qg--~~~~yl~~~k~lGF~~IEISdGti~l~~~~~~~lI~~a~~~-f~Vl~EvG~K~~~~------~~ 167 (276)
T 1u83_A 97 FFGGTLFEKYVSQK--KVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDE-FLVLSEVGSKDAEL------AS 167 (276)
T ss_dssp EECHHHHHHHHHTT--CHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTT-SEEEEECSCCC-----------
T ss_pred eCCcHHHHHHHHcC--cHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhh-cEEeeeccccCccc------cC
Confidence 997 5999999999 99999999999999999999999999999999999999999 99999999997621 10
Q ss_pred cccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-----ccccCCCcccHHHH-HHHHhccC
Q 022296 166 AFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-----DVCKHADSLRADII-AKVIGRLG 239 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i-~~ii~~l~ 239 (299)
.++++++ |+++++||+|||++|||||| |||+++|+||+|++ ++|++++|
T Consensus 168 ----------------------~~~~~~~---I~~~~~dLeAGA~~ViiEaRESG~~Gi~~~~g~~r~d~v~~~i~~~l~ 222 (276)
T 1u83_A 168 ----------------------RQSSEEW---LEYIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDID 222 (276)
T ss_dssp -----------------------CCSTHH---HHHHHHHHHHTEEEEEEC------------------CCHHHHHTTTSC
T ss_pred ----------------------CCCHHHH---HHHHHHHHHCCCcEEEEeeeccCCCCccCCCCCCcHHHHHHHHHhhCC
Confidence 1337788 99999999999999999996 89999999999999 99999999
Q ss_pred CCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCCcc
Q 022296 240 LEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 288 (299)
Q Consensus 240 ~eklifEAP~k~qQ~~fI~~fG~~VNLg-I~~~eVi~LE~LR~~~~G~~~ 288 (299)
++|||||||+|+||+|||++|||||||| |+|+||++|||||+|+||.+.
T Consensus 223 ~eklifEAp~k~qq~~fI~~fGp~VNLgNI~~~eVi~LE~LR~GLrgDT~ 272 (276)
T 1u83_A 223 INRLIFEAPNKTLQQGFIQKIGPNVNLANIPFHDAIALETLRLGLRSDTF 272 (276)
T ss_dssp GGGEEEECCSHHHHHHHHHHHCTTCCEEEEEGGGHHHHHHHHTTCSGGGC
T ss_pred hhhEEEECCCHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHcccccccc
Confidence 9999999999999999999999999998 999999999999999988653
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.077 Score=48.44 Aligned_cols=160 Identities=11% Similarity=0.062 Sum_probs=102.8
Q ss_pred hhHHHHHHHhhcccccEEEeeCccc--------ccCChhH---HHHHHHHHHhCCceec--CCc-H-HHHHHHhCCchHH
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSH--------SLMPKPF---IEEVVKRAHQHDVYVS--TGD-W-AEHLIRNGPSAFK 104 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs--------~l~p~~~---l~eKI~l~~~~gV~v~--~Gt-l-fE~a~~qg~~~~~ 104 (299)
...++..+++ -+|.+-+...+| -...++. +++-++.+|++|+.|. .++ + .|.....+|+.+.
T Consensus 82 ~~~i~~a~~~---G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~ 158 (295)
T 1ydn_A 82 MKGYEAAAAA---HADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVA 158 (295)
T ss_dssp HHHHHHHHHT---TCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHH
T ss_pred HHHHHHHHHC---CCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHH
Confidence 3445555554 466676665555 2233333 4566999999999875 121 1 1333344555677
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhccc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (299)
++++.+.+.|.+.|=|.|-.--+.+++-.++|+.+++. +.- ..+++.+.. |
T Consensus 159 ~~~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~-~~~-~~l~~H~Hn-------~-------------------- 209 (295)
T 1ydn_A 159 SVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAI-APA-HSLAGHYHD-------T-------------------- 209 (295)
T ss_dssp HHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTT-SCG-GGEEEEEBC-------T--------------------
T ss_pred HHHHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHh-CCC-CeEEEEECC-------C--------------------
Confidence 77777779999999999866678888889999999884 110 124443210 1
Q ss_pred CCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc------CCCcccHHHHHHHHhccCC
Q 022296 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 185 ~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d------~~G~~r~d~i~~ii~~l~~ 240 (299)
...- ...+...++|||++|=+=--|+-. ..||+..+.+-..+...|.
T Consensus 210 ------~Gla---~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~GN~~~e~lv~~l~~~g~ 262 (295)
T 1ydn_A 210 ------GGRA---LDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGF 262 (295)
T ss_dssp ------TSCH---HHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSCCBCBHHHHHHHHHHTTC
T ss_pred ------cchH---HHHHHHHHHhCCCEEEeccccCCCCCCCCCCcCChhHHHHHHHHHhcCC
Confidence 1122 555688899999977654347766 7899998877766665553
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.11 Score=45.14 Aligned_cols=126 Identities=6% Similarity=0.108 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTD 179 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti--~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~ 179 (299)
.+++.++.++++||+.||+....+ .++.++..++.+.+++.|+++.. ++.-.. +
T Consensus 31 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~-------~---------------- 86 (257)
T 3lmz_A 31 DLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYA-VGPIYM-------K---------------- 86 (257)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEE-EEEEEE-------C----------------
T ss_pred CHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEE-Eecccc-------C----------------
Confidence 689999999999999999998743 56678888999999999998653 332100 0
Q ss_pred hhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCC--------ch
Q 022296 180 KLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN--------PR 251 (299)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~--------k~ 251 (299)
+++.+ .+.++..-+.||.+|.+... .. .-..+.++++..|+ ++.+|.-. ..
T Consensus 87 ----------~~~~~---~~~i~~A~~lGa~~v~~~p~-----~~--~l~~l~~~a~~~gv-~l~lEn~~~~~~~~~~~~ 145 (257)
T 3lmz_A 87 ----------SEEEI---DRAFDYAKRVGVKLIVGVPN-----YE--LLPYVDKKVKEYDF-HYAIHLHGPDIKTYPDAT 145 (257)
T ss_dssp ----------SHHHH---HHHHHHHHHHTCSEEEEEEC-----GG--GHHHHHHHHHHHTC-EEEEECCCTTCSSSCSHH
T ss_pred ----------CHHHH---HHHHHHHHHhCCCEEEecCC-----HH--HHHHHHHHHHHcCC-EEEEecCCCcccccCCHH
Confidence 04455 55566677789999998642 11 22345556666665 35566542 33
Q ss_pred hHHHHHHHhCCCcccccCCCC
Q 022296 252 TSEWFIRRYGPKVNLFVDHSQ 272 (299)
Q Consensus 252 qQ~~fI~~fG~~VNLgI~~~e 272 (299)
+-..+++..+|+|-+-.|...
T Consensus 146 ~~~~ll~~~~p~vg~~~D~~h 166 (257)
T 3lmz_A 146 DVWVHTKDLDPRIGMCLDVGH 166 (257)
T ss_dssp HHHHHHTTSCTTEEEEEEHHH
T ss_pred HHHHHHHhCCCCccEEEchhh
Confidence 445566655565544344433
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.057 Score=46.13 Aligned_cols=144 Identities=15% Similarity=0.022 Sum_probs=86.1
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (299)
.+...-++++.+++++|++|.|+=.+.-... +-|+..+++ +++++...-+ .. -.+.+++.|.+.|.|
T Consensus 11 ~~~~~~~~~~~~~~~~diie~G~p~~~~~g~----~~i~~ir~~~~~~~i~~~~~~-----~~--~~~~~~~~~~~~Gad 79 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEVGTPFLIREGV----NAIKAIKEKYPHKEVLADAKI-----MD--GGHFESQLLFDAGAD 79 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEECHHHHHHHTT----HHHHHHHHHCTTSEEEEEEEE-----CS--CHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHhhcCccEEEeCcHHHHhccH----HHHHHHHHhCCCCEEEEEEEe-----cc--chHHHHHHHHhcCCC
Confidence 4556777778777899999999721111122 234444443 6666543211 12 233458999999999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhh
Q 022296 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGI 195 (299)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~-gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (299)
.|=+.+-. +.+...++++.+++.|+++..++ +. | ..
T Consensus 80 ~v~v~~~~---~~~~~~~~~~~~~~~g~~~~v~~~~~-----------------------~----------------t~- 116 (211)
T 3f4w_A 80 YVTVLGVT---DVLTIQSCIRAAKEAGKQVVVDMICV-----------------------D----------------DL- 116 (211)
T ss_dssp EEEEETTS---CHHHHHHHHHHHHHHTCEEEEECTTC-----------------------S----------------SH-
T ss_pred EEEEeCCC---ChhHHHHHHHHHHHcCCeEEEEecCC-----------------------C----------------CH-
Confidence 99996543 34566789999999887755431 11 1 11
Q ss_pred hhHHHHHHHHHccCcEEEEeccccccC-CCcccHHHHHHHHhccC
Q 022296 196 NKSRRAERCLEAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRLG 239 (299)
Q Consensus 196 ~~i~~~~~dLeAGA~~VIiEargi~d~-~G~~r~d~i~~ii~~l~ 239 (299)
.++++..+++|+++|.+.. |.... .+....+.+.++.+.++
T Consensus 117 --~~~~~~~~~~g~d~i~v~~-g~~g~~~~~~~~~~i~~l~~~~~ 158 (211)
T 3f4w_A 117 --PARVRLLEEAGADMLAVHT-GTDQQAAGRKPIDDLITMLKVRR 158 (211)
T ss_dssp --HHHHHHHHHHTCCEEEEEC-CHHHHHTTCCSHHHHHHHHHHCS
T ss_pred --HHHHHHHHHcCCCEEEEcC-CCcccccCCCCHHHHHHHHHHcC
Confidence 4556888999999998862 21110 11113466666665543
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.22 Score=43.21 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~ 169 (299)
.+++.++.++++||++||+.... ..++.++..++-+.+++.|+++.. ++.-.+ .
T Consensus 23 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~-------~------ 88 (262)
T 3p6l_A 23 PLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVG-TGVYVA-------E------ 88 (262)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEE-EEEECC-------S------
T ss_pred CHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEE-EeccCC-------c------
Confidence 68999999999999999998652 356788888999999999998643 222100 0
Q ss_pred cccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEec
Q 022296 170 YVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEA 247 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEA 247 (299)
..+.+ -+.++.+-+.||..|.+... .-.-..+.++++..|+ ++.+|.
T Consensus 89 --------------------~~~~~---~~~i~~A~~lGa~~v~~~~~-------~~~~~~l~~~a~~~gv-~l~~En 135 (262)
T 3p6l_A 89 --------------------KSSDW---EKMFKFAKAMDLEFITCEPA-------LSDWDLVEKLSKQYNI-KISVHN 135 (262)
T ss_dssp --------------------STTHH---HHHHHHHHHTTCSEEEECCC-------GGGHHHHHHHHHHHTC-EEEEEC
T ss_pred --------------------cHHHH---HHHHHHHHHcCCCEEEecCC-------HHHHHHHHHHHHHhCC-EEEEEe
Confidence 02344 44456666789999999752 1122345555555554 355554
|
| >3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.082 Score=45.72 Aligned_cols=139 Identities=21% Similarity=0.237 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.+++.++.++++||+.||+... .+...+..++.+.+++.|+++..--.--+ . .. .|+ ..+ +
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-~---~~-~d~--------~~r--~-- 79 (275)
T 3qc0_A 19 GFAEAVDICLKHGITAIAPWRD--QVAAIGLGEAGRIVRANGLKLTGLCRGGF-F---PA-PDA--------SGR--E-- 79 (275)
T ss_dssp CHHHHHHHHHHTTCCEEECBHH--HHHHHCHHHHHHHHHHHTCEESCEEEEEC-C---CC-SSH--------HHH--H--
T ss_pred CHHHHHHHHHHcCCCEEEeccc--cccccCHHHHHHHHHHcCCceEEeecCCC-c---CC-CCH--------HHH--H--
Confidence 6889999999999999999764 23456677888899999998764221111 1 11 110 000 0
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCc----c--cHHHHHHH---HhccCCCceEEecC----
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADS----L--RADIIAKV---IGRLGLEKTMFEAT---- 248 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~----~--r~d~i~~i---i~~l~~eklifEAP---- 248 (299)
-.++.+ .+.++..-+.||..|++-+-........ + -.+.+.++ ++..|+ ++.+|.-
T Consensus 80 -------~~~~~~---~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~~~~~ 148 (275)
T 3qc0_A 80 -------KAIDDN---RRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGV-PLAIEPLHPMY 148 (275)
T ss_dssp -------HHHHHH---HHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTC-CEEECCCCGGG
T ss_pred -------HHHHHH---HHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEeECCCcc
Confidence 013444 4445555667999999876322211101 0 01223333 334455 5888851
Q ss_pred --------CchhHHHHHHHhCCCcccc--cCCCC
Q 022296 249 --------NPRTSEWFIRRYGPKVNLF--VDHSQ 272 (299)
Q Consensus 249 --------~k~qQ~~fI~~fG~~VNLg--I~~~e 272 (299)
...+-..+++..++ |+| .|...
T Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~--~vg~~~D~~h 180 (275)
T 3qc0_A 149 AADRACVNTLGQALDICETLGP--GVGVAIDVYH 180 (275)
T ss_dssp TTTTBSCCCHHHHHHHHHHHCT--TEEEEEEHHH
T ss_pred cCCccccCCHHHHHHHHHHhCc--ccEEEEEhhh
Confidence 34567789999998 665 55443
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.013 Score=55.62 Aligned_cols=139 Identities=18% Similarity=0.166 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhC-------CceecCCcHHHHH-HHhCCchHHHHHHHHHHcCCCEEEecCCccc----C--ChhHHHHHH
Q 022296 71 FIEEVVKRAHQH-------DVYVSTGDWAEHL-IRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----I--PEETLLRYV 136 (299)
Q Consensus 71 ~l~eKI~l~~~~-------gV~v~~GtlfE~a-~~qg~~~~~~yl~~~k~lGF~~IEISdGti~----i--~~~~r~~lI 136 (299)
.+.|.|+-.++. +|++++..|.+-- +... ...++.+.+.+.|+|+|+||+|+.. + ++.....++
T Consensus 210 ~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~--~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~ 287 (363)
T 3l5l_A 210 FLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLE--ESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIA 287 (363)
T ss_dssp HHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHH--HHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHH
T ss_pred HHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHH--HHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHH
Confidence 566777777754 3355654343211 2222 4566778888899999999998642 1 233345667
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHcc-CcEEEEe
Q 022296 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAG-ADMIMID 215 (299)
Q Consensus 137 ~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~VIiE 215 (299)
+.+++. +. +|=++. | . ..+ .+.+++.|++| ||.|++
T Consensus 288 ~~ir~~-~~-iPVi~~-------G---g---------------------I~s---------~e~a~~~l~~G~aD~V~i- 324 (363)
T 3l5l_A 288 ERVRRE-AK-LPVTSA-------W---G---------------------FGT---------PQLAEAALQANQLDLVSV- 324 (363)
T ss_dssp HHHHHH-HT-CCEEEC-------S---S---------------------TTS---------HHHHHHHHHTTSCSEEEC-
T ss_pred HHHHHH-cC-CcEEEe-------C---C---------------------CCC---------HHHHHHHHHCCCccEEEe-
Confidence 776662 00 111111 0 0 011 45568899999 999988
Q ss_pred ccccccCCCcccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhC
Q 022296 216 SDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYG 261 (299)
Q Consensus 216 argi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~qQ~~fI~~fG 261 (299)
+|.+..+ .|++.++.+.++.+.. +...+.|..|++.+|+
T Consensus 325 GR~~lan-----Pdl~~k~~~~lg~~~~--~~~~~~~~~~~~~~~~ 363 (363)
T 3l5l_A 325 GRAHLAD-----PHWAYFAAKELGVEKA--SWTLPAPYAHWLERYR 363 (363)
T ss_dssp CHHHHHC-----TTHHHHHHHHTTCTTG--GGGSCHHHHHHHC---
T ss_pred cHHHHhC-----chHHHHHHHHcCCCcc--cCCCCchhHhHhhccC
Confidence 6655432 6789999998885321 2355678888877664
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.21 Score=45.90 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=101.8
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCChh-----------HHHHHHHHHHhCCceec------CCcHHHHHHHhCCchH
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~~ 103 (299)
..++..+++ =+|.+-+..++|-++.+. .+++-++.+|++|+.|. .|.-++ -.-+|+.+
T Consensus 87 ~~i~~a~~a---G~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~--~~~~~~~~ 161 (302)
T 2ftp_A 87 KGFEAALES---GVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYD--GDVDPRQV 161 (302)
T ss_dssp HHHHHHHHT---TCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTT--BCCCHHHH
T ss_pred HHHHHHHhC---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcC--CCCCHHHH
Confidence 345555553 467777767776653322 34788999999999883 232112 12333456
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.++++.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++. +. .-.++..+. . |
T Consensus 162 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~-~~-~~~l~~H~H-n------~------------------- 213 (302)
T 2ftp_A 162 AWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASE-VP-RERLAGHFH-D------T------------------- 213 (302)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTT-SC-GGGEEEEEB-C------T-------------------
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHh-CC-CCeEEEEeC-C------C-------------------
Confidence 666666669999999999876678888888999999874 21 113444321 0 1
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc------CCCcccHHHHHHHHhccC
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLG 239 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d------~~G~~r~d~i~~ii~~l~ 239 (299)
...- +..+...++|||++|=+=-.|+=. ..||...+.+-..+...|
T Consensus 214 -------~Gla---~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~~g 265 (302)
T 2ftp_A 214 -------YGQA---LANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLE 265 (302)
T ss_dssp -------TSCH---HHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBCBCBHHHHHHHHHHTT
T ss_pred -------ccHH---HHHHHHHHHhCCCEEEecccccCCCCCCCCCCCChhHHHHHHHHHhcC
Confidence 1222 566688999999976433348877 789999888777776554
|
| >3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.16 Score=44.87 Aligned_cols=144 Identities=15% Similarity=0.239 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------cCChhHHHHHHHHHHHcCCcccceeeee-cCCCCCCCcccccccccccC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVM-FNKSDIPSDRDRAFGAYVAR 173 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-------~i~~~~r~~lI~~~~~~G~~v~~E~gvK-~~~sevg~~~d~~~~~~~~~ 173 (299)
.+++.++.++++||+.||++.... .++.++..++.+.+++.|+++.. +..- +..-..++ .|+
T Consensus 31 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~~-~d~-------- 100 (295)
T 3cqj_A 31 CWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPS-MCLSAHRRFPLGS-EDD-------- 100 (295)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEE-EEEGGGGTSCTTC-SSH--------
T ss_pred CHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEE-EecCcccCCCCCC-CCH--------
Confidence 799999999999999999986542 45677788899999999998753 2210 00000111 010
Q ss_pred CCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHH-------HH---HHHhccCCCce
Q 022296 174 APRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADI-------IA---KVIGRLGLEKT 243 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~-------i~---~ii~~l~~ekl 243 (299)
. ..+ -.++.+ .+.++..-+.||..|++-+-..+.. .-+.+. +. ++++..|+ +|
T Consensus 101 ~--~r~---------~~~~~~---~~~i~~A~~lG~~~v~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l 163 (295)
T 3cqj_A 101 A--VRA---------QGLEIM---RKAIQFAQDVGIRVIQLAGYDVYYQ--EANNETRRRFRDGLKESVEMASRAQV-TL 163 (295)
T ss_dssp H--HHH---------HHHHHH---HHHHHHHHHHTCCEEEECCCSCSSS--CCCHHHHHHHHHHHHHHHHHHHHHTC-EE
T ss_pred H--HHH---------HHHHHH---HHHHHHHHHcCCCEEEECCCCCCcC--cCHHHHHHHHHHHHHHHHHHHHHhCC-EE
Confidence 0 000 113445 4555666678999999865322111 112221 22 22333444 57
Q ss_pred EEecC------CchhHHHHHHHhCC-CcccccCCCC
Q 022296 244 MFEAT------NPRTSEWFIRRYGP-KVNLFVDHSQ 272 (299)
Q Consensus 244 ifEAP------~k~qQ~~fI~~fG~-~VNLgI~~~e 272 (299)
.+|.- ...+-..+++..|+ +|-+.+|...
T Consensus 164 ~lEn~~~~~~~~~~~~~~l~~~v~~~~vg~~~D~~h 199 (295)
T 3cqj_A 164 AMEIMDYPLMNSISKALGYAHYLNNPWFQLYPDIGN 199 (295)
T ss_dssp EEECCSSGGGCSHHHHHHHHHHHCCTTEEEECBHHH
T ss_pred EEeeCCCcccCCHHHHHHHHHhcCCCCeEEEeccch
Confidence 78863 34667789999985 4444355433
|
| >1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.2 Score=43.75 Aligned_cols=131 Identities=14% Similarity=0.134 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.+++.++.++++||++||+......-+. +..++-+.+++.|+++..-..... .+ . +
T Consensus 24 ~~~~~l~~a~~~G~~~vEl~~~~~~~~~-~~~~~~~~l~~~gl~i~~~~~~~~-~~---~--~----------------- 79 (264)
T 1yx1_A 24 GQASFLPLLAMAGAQRVELREELFAGPP-DTEALTAAIQLQGLECVFSSPLEL-WR---E--D----------------- 79 (264)
T ss_dssp CGGGGHHHHHHHTCSEEEEEGGGCSSCC-CHHHHHHHHHHTTCEEEEEEEEEE-EC---T--T-----------------
T ss_pred CHHHHHHHHHHcCCCEEEEEHHhcCCCH-HHHHHHHHHHHcCCEEEEecchhh-cC---C--c-----------------
Confidence 5788999999999999999754332223 666788889999998643211100 00 0 0
Q ss_pred cccCCCccch-hhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCc------hhHH
Q 022296 182 FLASNPEIEV-GVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP------RTSE 254 (299)
Q Consensus 182 ~~~~~~~~~~-~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k------~qQ~ 254 (299)
. ++ +.+ .+.++.+-+.||..|.+-.-. +.... .-..+.++++..|+ ++.+|.-.. .+-.
T Consensus 80 -----~--~~~~~~---~~~i~~A~~lGa~~v~~~~g~-~~~~~--~l~~l~~~a~~~Gv-~l~lEn~~~~~~~~~~~~~ 145 (264)
T 1yx1_A 80 -----G--QLNPEL---EPTLRRAEACGAGWLKVSLGL-LPEQP--DLAALGRRLARHGL-QLLVENDQTPQGGRIEVLE 145 (264)
T ss_dssp -----S--SBCTTH---HHHHHHHHHTTCSEEEEEEEC-CCSSC--CHHHHHHHHTTSSC-EEEEECCSSHHHHCHHHHH
T ss_pred -----h--hHHHHH---HHHHHHHHHcCCCEEEEecCC-CCcHH--HHHHHHHHHHhcCC-EEEEecCCCCCCCCHHHHH
Confidence 0 12 444 455666677899999987632 22222 44556667777776 688886532 4556
Q ss_pred HHHHHh---CCCcccccCC
Q 022296 255 WFIRRY---GPKVNLFVDH 270 (299)
Q Consensus 255 ~fI~~f---G~~VNLgI~~ 270 (299)
.+++.. |++|-+-.|.
T Consensus 146 ~ll~~v~~~~~~vg~~~D~ 164 (264)
T 1yx1_A 146 RFFRLAERQQLDLAMTFDI 164 (264)
T ss_dssp HHHHHHHHTTCSEEEEEET
T ss_pred HHHHHHHhcCCCeEEEEeh
Confidence 788888 8765554555
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.21 Score=45.84 Aligned_cols=158 Identities=14% Similarity=0.134 Sum_probs=106.2
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCc
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPS 101 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~ 101 (299)
....++..+++ -+|.+-+...+|-.+.+ +.+++-++.+|++|+.|. .|- |..-..+++
T Consensus 82 ~~~~i~~a~~a---g~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~--~~~~~~~~~ 156 (298)
T 2cw6_A 82 NLKGFEAAVAA---GAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGC--PYEGKISPA 156 (298)
T ss_dssp SHHHHHHHHHT---TCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCB--TTTBSCCHH
T ss_pred CHHhHHHHHHC---CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeC--CcCCCCCHH
Confidence 34455666655 46777776666654322 356778999999999884 231 211123445
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.+.++.+.+.++|.+.|=+.|-.--+.+++-.++|+.+++. +. .-.+++.+.. |
T Consensus 157 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~-~~-~~~i~~H~Hn-------~----------------- 210 (298)
T 2cw6_A 157 KVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQE-VP-LAALAVHCHD-------T----------------- 210 (298)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHH-SC-GGGEEEEEBC-------T-----------------
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHh-CC-CCeEEEEECC-------C-----------------
Confidence 67778888899999999999988889999999999999984 21 1134453211 1
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc------CCCcccHHHHHHHHhccC
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLG 239 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d------~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+...++|||+.|=.=--|+=. ..||..++.+-..+...|
T Consensus 211 ---------~Gla---~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aGN~~~E~lv~~l~~~g 262 (298)
T 2cw6_A 211 ---------YGQA---LANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLG 262 (298)
T ss_dssp ---------TSCH---HHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCCBCBHHHHHHHHHHHT
T ss_pred ---------CchH---HHHHHHHHHhCCCEEEeecccccCCCCCCCCcCChhHHHHHHHHHhcC
Confidence 1222 555677899999976542247766 799999988877776544
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.48 Score=44.46 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=107.3
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHH
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYV 107 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl 107 (299)
+.++..+++- +|.+-+-..+|-.+.+ +.+++-++.++++|+.|..+ .|+. .-...++.+.+..
T Consensus 100 ~~i~~a~~~g---~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~-~~~~~~~~~~~~~ 175 (337)
T 3ble_A 100 KTVDWIKDSG---AKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSN-GFRNSPDYVKSLV 175 (337)
T ss_dssp HHHHHHHHHT---CCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH-HHHHCHHHHHHHH
T ss_pred hhHHHHHHCC---CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-CCcCCHHHHHHHH
Confidence 3555556544 4666665555543311 46788899999999987754 3322 3344555778888
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCC
Q 022296 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNP 187 (299)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
+.+.++|.+.|=+.|-.--+.+.+-.++|+.+++. +. .-.+++.+. .|
T Consensus 176 ~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~p-~~~i~~H~H-------nd----------------------- 223 (337)
T 3ble_A 176 EHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQK-YP-DIHFEFHGH-------ND----------------------- 223 (337)
T ss_dssp HHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHH-CT-TSCEEEECB-------CT-----------------------
T ss_pred HHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHh-cC-CCeEEEEec-------CC-----------------------
Confidence 88899999999999988889999999999999984 10 123455321 11
Q ss_pred ccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 188 EIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 188 ~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.... +..+...++|||+.|=.=--|+=...||..++.+-..+...
T Consensus 224 ---~GlA---~AN~laAv~aGa~~vd~tv~GlG~~aGN~~~E~lv~~L~~~ 268 (337)
T 3ble_A 224 ---YDLS---VANSLQAIRAGVKGLHASINGLGERAGNTPLEALVTTIHDK 268 (337)
T ss_dssp ---TSCH---HHHHHHHHHTTCSEEEEBGGGCSSTTCBCBHHHHHHHHHHH
T ss_pred ---cchH---HHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHHHh
Confidence 2333 66678899999996643335888899999988777666543
|
| >2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.58 Score=40.29 Aligned_cols=139 Identities=12% Similarity=0.152 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc--c-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL--E-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti--~-i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.+++.++.++++||+.||+..... . .+..+..++-+.+++.|+++.+ ++.-.+.. . .|
T Consensus 20 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~-~~~~~~~~---~-~~-------------- 80 (272)
T 2q02_A 20 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVT-INAVYPFN---Q-LT-------------- 80 (272)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEE-EEEETTTT---S-CC--------------
T ss_pred CHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEe-chhhhccC---C-cH--------------
Confidence 688999999999999999985432 2 2446677788888999998654 22211111 0 01
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCccc---HHHHHH---HHhccCCCceEEecC----
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLR---ADIIAK---VIGRLGLEKTMFEAT---- 248 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r---~d~i~~---ii~~l~~eklifEAP---- 248 (299)
+ -..+.+ .+.++.+-+.||..|.+-+- .... ..++ .+.+.+ +++..|+ ++.+|.-
T Consensus 81 ~---------~~~~~~---~~~i~~a~~lG~~~v~~~~g-~~~~-~~~~~~~~~~l~~l~~~a~~~gv-~l~~E~~~~~~ 145 (272)
T 2q02_A 81 E---------EVVKKT---EGLLRDAQGVGARALVLCPL-NDGT-IVPPEVTVEAIKRLSDLFARYDI-QGLVEPLGFRV 145 (272)
T ss_dssp H---------HHHHHH---HHHHHHHHHHTCSEEEECCC-CSSB-CCCHHHHHHHHHHHHHHHHTTTC-EEEECCCCSTT
T ss_pred H---------HHHHHH---HHHHHHHHHhCCCEEEEccC-CCch-hHHHHHHHHHHHHHHHHHHHcCC-EEEEEecCCCc
Confidence 0 003344 44555566789999988432 1111 1111 223333 3344554 5777753
Q ss_pred ----CchhHHHHHHHhCCCcccccCCCCch
Q 022296 249 ----NPRTSEWFIRRYGPKVNLFVDHSQVM 274 (299)
Q Consensus 249 ----~k~qQ~~fI~~fG~~VNLgI~~~eVi 274 (299)
...+-..+++..||+|.+.+|..+..
T Consensus 146 ~~~~~~~~~~~l~~~v~~~~g~~~D~~h~~ 175 (272)
T 2q02_A 146 SSLRSAVWAQQLIREAGSPFKVLLDTFHHH 175 (272)
T ss_dssp CSCCCHHHHHHHHHHHTCCCEEEEEHHHHH
T ss_pred ccccCHHHHHHHHHHhCcCeEEEEEchHhh
Confidence 34556689999996555545554443
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.37 Score=46.55 Aligned_cols=123 Identities=17% Similarity=0.277 Sum_probs=85.2
Q ss_pred ccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc------
Q 022296 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL------ 125 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti------ 125 (299)
++.+-||+||..+.+.+.+++.++.++++ ++.- + .|+.+.-+|+.+ ++.++.+++.|++.|+++--|.
T Consensus 105 i~~i~fgGGtpt~l~~~~l~~ll~~i~~~~~~~~--~--~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~ 180 (457)
T 1olt_A 105 VSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNA--D--AEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQR 180 (457)
T ss_dssp EEEEEEEESCGGGSCHHHHHHHHHHHHHHSCEEE--E--EEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHH
T ss_pred eEEEEEeCCCcccCCHHHHHHHHHHHHHhCCCCC--C--cEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHH
Confidence 78899999999999999999999999873 1100 0 011111233333 5789999999999999964443
Q ss_pred ----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 126 ----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
.-+.++-.+.|+.+++.||. +...+=. +. + + .+.+.+ .+.
T Consensus 181 ~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI~--Gl----P-g-------------------------et~e~~---~~t 225 (457)
T 1olt_A 181 LVNREQDEEFIFALLNHAREIGFTSTNIDLIY--GL----P-K-------------------------QTPESF---AFT 225 (457)
T ss_dssp HHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEE--SC----T-T-------------------------CCHHHH---HHH
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEc--CC----C-C-------------------------CCHHHH---HHH
Confidence 23567888999999999997 5554432 11 0 0 115666 777
Q ss_pred HHHHHHccCcEEEEe
Q 022296 201 AERCLEAGADMIMID 215 (299)
Q Consensus 201 ~~~dLeAGA~~VIiE 215 (299)
++..++.|.+.|-+=
T Consensus 226 l~~~~~l~~~~i~~y 240 (457)
T 1olt_A 226 LKRVAELNPDRLSVF 240 (457)
T ss_dssp HHHHHHHCCSEEEEE
T ss_pred HHHHHhcCcCEEEee
Confidence 888889999988764
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.48 Score=47.78 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=93.4
Q ss_pred HHHHHHhhcccccEEEeeCccc------ccCChhHHHHHHHHHHh--CCceecCCcHHHHHHHhC---------C-chHH
Q 022296 43 LEDIFESMGQFVDGLKFSGGSH------SLMPKPFIEEVVKRAHQ--HDVYVSTGDWAEHLIRNG---------P-SAFK 104 (299)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs------~l~p~~~l~eKI~l~~~--~gV~v~~GtlfE~a~~qg---------~-~~~~ 104 (299)
+-+.|..+| +|.+=.|||.+ .+.+ + =.+.++.+++ -++.+. .| .++ | +-.+
T Consensus 52 Ia~~L~~~G--v~~IE~G~patF~~~~rfl~~-d-~~e~lr~l~~~~~~~~l~--~L-----~R~~N~~G~~~ypddv~~ 120 (539)
T 1rqb_A 52 ACADIDAAG--YWSVECWGGATYDSCIRFLNE-D-PWERLRTFRKLMPNSRLQ--ML-----LRGQNLLGYRHYNDEVVD 120 (539)
T ss_dssp GHHHHHHTT--CSEEEEEETTHHHHHHHTSCC-C-HHHHHHHHHHHCTTSCEE--EE-----ECGGGTTSSSCCCHHHHH
T ss_pred HHHHHHHcC--CCEEEeCcccccccchhccCC-C-HHHHHHHHHHhCCCCEEE--EE-----eccccccCcccCcccccH
Confidence 345556666 88999999877 2222 1 2333333333 133221 11 121 1 1378
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhccc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (299)
.+++.+.+.|.+.|-|.+.+-++ +.-...|+.+++.|..|-.-+.- +.+. +
T Consensus 121 ~~ve~a~~aGvd~vrIf~s~sd~--~ni~~~i~~ak~~G~~v~~~i~~-----~~~~-----------~----------- 171 (539)
T 1rqb_A 121 RFVDKSAENGMDVFRVFDAMNDP--RNMAHAMAAVKKAGKHAQGTICY-----TISP-----------V----------- 171 (539)
T ss_dssp HHHHHHHHTTCCEEEECCTTCCT--HHHHHHHHHHHHTTCEEEEEEEC-----CCST-----------T-----------
T ss_pred HHHHHHHhCCCCEEEEEEehhHH--HHHHHHHHHHHHCCCeEEEEEEe-----eeCC-----------C-----------
Confidence 89999999999999999888777 55668999999999875332322 1111 1
Q ss_pred CCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHh
Q 022296 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 185 ~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~ 236 (299)
.+++.+ ++.+++-.++||+.| .|+|..|-.....+.++++
T Consensus 172 ----~~~e~~---~~~a~~l~~~Gad~I-----~L~DT~G~~~P~~v~~lv~ 211 (539)
T 1rqb_A 172 ----HTVEGY---VKLAGQLLDMGADSI-----ALKDMAALLKPQPAYDIIK 211 (539)
T ss_dssp ----CCHHHH---HHHHHHHHHTTCSEE-----EEEETTCCCCHHHHHHHHH
T ss_pred ----CCHHHH---HHHHHHHHHcCCCEE-----EeCCCCCCcCHHHHHHHHH
Confidence 126777 888999999999855 4788888888888887775
|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.29 Score=42.95 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.+++.++.++++||+.||+..... .++..++.+.+++.|+++.. +..-... ...+ .| +...+
T Consensus 39 ~~~~~l~~~~~~G~~~vEl~~~~~---~~~~~~~~~~l~~~gl~v~~-~~~~~~~-~l~~-~d----------~~~r~-- 100 (287)
T 3kws_A 39 SLNEKLDFMEKLGVVGFEPGGGGL---AGRVNEIKQALNGRNIKVSA-ICAGFKG-FILS-TD----------PAIRK-- 100 (287)
T ss_dssp SHHHHHHHHHHTTCCEEECBSTTC---GGGHHHHHHHHTTSSCEECE-EECCCCS-CTTB-SS----------HHHHH--
T ss_pred CHHHHHHHHHHcCCCEEEecCCch---HHHHHHHHHHHHHcCCeEEE-EecCCCC-cCCC-CC----------HHHHH--
Confidence 688999999999999999998743 45667788888889998754 2221000 0000 01 00000
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-ccccC----CCccc---HHHHHH---HHhccCCCceEEecC--
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-DVCKH----ADSLR---ADIIAK---VIGRLGLEKTMFEAT-- 248 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-gi~d~----~G~~r---~d~i~~---ii~~l~~eklifEAP-- 248 (299)
-.++.+ .+.++..-+.||..|++-+- +-++. ..... .+.+.+ +++..|+ +|.+|.=
T Consensus 101 -------~~~~~~---~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~~~ 169 (287)
T 3kws_A 101 -------ECMDTM---KEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGT-SVIFEPLNR 169 (287)
T ss_dssp -------HHHHHH---HHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTC-CEEECCCCT
T ss_pred -------HHHHHH---HHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEecCc
Confidence 013444 44555566789999988542 22221 10111 122222 3344555 6888832
Q ss_pred -------CchhHHHHHHHhC-CCcccccCCCCc
Q 022296 249 -------NPRTSEWFIRRYG-PKVNLFVDHSQV 273 (299)
Q Consensus 249 -------~k~qQ~~fI~~fG-~~VNLgI~~~eV 273 (299)
...+-..+++..| |+|.+-+|....
T Consensus 170 ~~~~~~~~~~~~~~ll~~v~~~~vg~~~D~~h~ 202 (287)
T 3kws_A 170 KECFYLRQVADAASLCRDINNPGVRCMGDFWHM 202 (287)
T ss_dssp TTCSSCCCHHHHHHHHHHHCCTTEEEEEEHHHH
T ss_pred ccCcccCCHHHHHHHHHHcCCCCeeEEeehHHH
Confidence 3456778999999 667665554443
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.36 Score=44.60 Aligned_cols=152 Identities=14% Similarity=0.131 Sum_probs=104.8
Q ss_pred HHHHHHHh---hcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHH
Q 022296 42 VLEDIFES---MGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYV 107 (299)
Q Consensus 42 ~l~DlLe~---ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl 107 (299)
.++..++. +| +|.+-+-..+|-+..+ +.+++-++.++++|..|..+- |.+-.-+++.+-++.
T Consensus 81 di~~a~~~~~~ag--~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~--~d~~~~~~~~~~~~~ 156 (293)
T 3ewb_X 81 DIDRAEEALKDAV--SPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSP--EDATRSDRAFLIEAV 156 (293)
T ss_dssp HHHHHHHHHTTCS--SEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEE--ETGGGSCHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEe--ccCCCCCHHHHHHHH
Confidence 34445553 33 6766666666654422 236788899999999877542 223344555678888
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCcccccccccccCCCCccchhcccC
Q 022296 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185 (299)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v--~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (299)
+.+.++|.+.|-+.|-.--+.+.+-.++|+.+++. +.- .-.+++.+.. |
T Consensus 157 ~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~~~l~~H~Hn-------d--------------------- 207 (293)
T 3ewb_X 157 QTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRRE-IKQFDDIIFASHCHD-------D--------------------- 207 (293)
T ss_dssp HHHHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHH-CTTGGGSEEEEECBC-------T---------------------
T ss_pred HHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHHh-cCCccCceEEEEeCC-------C---------------------
Confidence 99999999999999999999999999999999884 110 0125553221 1
Q ss_pred CCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 186 ~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
.... +..+...++|||+ ++++- |+=...||.-++.+-..+.
T Consensus 208 -----~Gla---~AN~laA~~aGa~--~vd~sv~GlGeraGN~~~E~vv~~L~ 250 (293)
T 3ewb_X 208 -----LGMA---TANALAAIENGAR--RVEGTINGIGERAGNTALEEVAVALH 250 (293)
T ss_dssp -----TSCH---HHHHHHHHHTTCC--EEEEBGGGCCTTTCBCBHHHHHHHHH
T ss_pred -----cChH---HHHHHHHHHhCCC--EEEeeccccccccccHhHHHHHHHHH
Confidence 2333 6667889999999 45775 8888999999887665554
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.62 Score=43.71 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.++++++.+.+.|.+.|.+.-|.- . .++++.+++.|+++ +++..
T Consensus 110 ~~~~~~~~~~~~g~~~V~~~~g~~---~---~~~i~~~~~~g~~v----~~~v~-------------------------- 153 (369)
T 3bw2_A 110 GYDAKLAVLLDDPVPVVSFHFGVP---D---REVIARLRRAGTLT----LVTAT-------------------------- 153 (369)
T ss_dssp THHHHHHHHHHSCCSEEEEESSCC---C---HHHHHHHHHTTCEE----EEEES--------------------------
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCC---c---HHHHHHHHHCCCeE----EEECC--------------------------
Confidence 589999999999999999987753 1 35777777777653 33200
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
+ ++.++...++|||+|++++.
T Consensus 154 ------t---------~~~a~~a~~~GaD~i~v~g~ 174 (369)
T 3bw2_A 154 ------T---------PEEARAVEAAGADAVIAQGV 174 (369)
T ss_dssp ------S---------HHHHHHHHHTTCSEEEEECT
T ss_pred ------C---------HHHHHHHHHcCCCEEEEeCC
Confidence 0 33457788999999999885
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.54 Score=42.27 Aligned_cols=75 Identities=9% Similarity=0.051 Sum_probs=53.2
Q ss_pred hhHHHHHHHhhc--ccccEEEeeCccc--------ccCChhHHHHHHHHHHhC-Cceec----CCcHHHHHHHhCCchHH
Q 022296 40 HNVLEDIFESMG--QFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQH-DVYVS----TGDWAEHLIRNGPSAFK 104 (299)
Q Consensus 40 ~~~l~DlLe~ag--~yID~lKfg~GTs--------~l~p~~~l~eKI~l~~~~-gV~v~----~GtlfE~a~~qg~~~~~ 104 (299)
+..+.+..+.+- ...|++-+.+++- ...+.+.+.+.++.+++. ++++. ++ + ..+.
T Consensus 110 ~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~-~---------~~~~ 179 (311)
T 1ep3_A 110 EADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPN-V---------TDIV 179 (311)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSC-S---------SCSH
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC-h---------HHHH
Confidence 445566666555 5789998877643 334667788999988887 77544 33 2 2567
Q ss_pred HHHHHHHHcCCCEEEecCCc
Q 022296 105 EYVEDCKQVGFDTIELNVGS 124 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGt 124 (299)
++.+.+.+.|.|+|-++++.
T Consensus 180 ~~a~~l~~~G~d~i~v~~~~ 199 (311)
T 1ep3_A 180 PIAKAVEAAGADGLTMINTL 199 (311)
T ss_dssp HHHHHHHHTTCSEEEECCCE
T ss_pred HHHHHHHHcCCCEEEEeCCC
Confidence 78889999999999998743
|
| >2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.32 Score=42.33 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCcccccccccccCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 174 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~s-evg~~~d~~~~~~~~~~ 174 (299)
.+++.++.++++||+.||+..+. ..++.++..++.+.+++.|+++.+ +....+.. ...+ .|+ .
T Consensus 13 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~h~~~~~~~~~-~~~--------~ 82 (287)
T 2x7v_A 13 GFDRVPQDTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKKHGIDWEN-AFCHSGYLINLAS-PKD--------D 82 (287)
T ss_dssp CGGGHHHHHHHTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHHHTCCGGG-EEEECCTTCCTTC-SSH--------H
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHHcCCCcce-eEEecccccccCC-CCH--------H
Confidence 57788999999999999997532 145667888899999999999622 22211110 1101 010 0
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC-C-cc--cHHHHHHHHhccCCCceEEecC--
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA-D-SL--RADIIAKVIGRLGLEKTMFEAT-- 248 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~-G-~~--r~d~i~~ii~~l~~eklifEAP-- 248 (299)
.+ + ..++.+ .+.++.+-+.||..|.+-.-...+.. . .+ -.+.+.++++...-=++.+|.-
T Consensus 83 ~r--~---------~~~~~~---~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~ 148 (287)
T 2x7v_A 83 IW--Q---------KSVELL---KKEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGLNEVLNNTEGVVILLENVSQ 148 (287)
T ss_dssp HH--H---------HHHHHH---HHHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHHHHHHTTCCSCEEEEECCCC
T ss_pred HH--H---------HHHHHH---HHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHcccCCCEEEEeCCCC
Confidence 00 0 113445 44555566789999988543221110 0 00 0123344443311226778863
Q ss_pred -------CchhHHHHHHHhC--CCcccccCC
Q 022296 249 -------NPRTSEWFIRRYG--PKVNLFVDH 270 (299)
Q Consensus 249 -------~k~qQ~~fI~~fG--~~VNLgI~~ 270 (299)
+..+-..+++..+ |+|-+.+|.
T Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~~vg~~~D~ 179 (287)
T 2x7v_A 149 KGGNIGYKLEQLKKIRDLVDQRDRVAITYDT 179 (287)
T ss_dssp CTTEECSSHHHHHHHHHHCSCGGGEEEEEEH
T ss_pred CCCccCCCHHHHHHHHHhcCCCCCeEEEEEh
Confidence 3445678999998 455543443
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.59 Score=43.80 Aligned_cols=164 Identities=12% Similarity=0.116 Sum_probs=109.8
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHH
Q 022296 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKE 105 (299)
Q Consensus 26 lT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~ 105 (299)
+.++..|+.. -.+.++...++ -+|.+-+.. .+..-+..++-++.++++|+.+... +|.+....++.+.+
T Consensus 85 i~~l~~p~~~---~~~~i~~a~~a---Gvd~v~I~~---~~s~~~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~e~~~~ 153 (345)
T 1nvm_A 85 IATLLLPGIG---SVHDLKNAYQA---GARVVRVAT---HCTEADVSKQHIEYARNLGMDTVGF--LMMSHMIPAEKLAE 153 (345)
T ss_dssp EEEEECBTTB---CHHHHHHHHHH---TCCEEEEEE---ETTCGGGGHHHHHHHHHHTCEEEEE--EESTTSSCHHHHHH
T ss_pred EEEEecCCcc---cHHHHHHHHhC---CcCEEEEEE---eccHHHHHHHHHHHHHHCCCEEEEE--EEeCCCCCHHHHHH
Confidence 4444456551 13344444443 577776652 2333367899999999999976543 12233444557888
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccC
Q 022296 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185 (299)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (299)
..+.+.++|.+.|=+.|-+--+.+++-.++|+.+++.- .....+++.+. .|
T Consensus 154 ia~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~-~~~~pi~~H~H-------n~--------------------- 204 (345)
T 1nvm_A 154 QGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVL-KPETQVGMHAH-------HN--------------------- 204 (345)
T ss_dssp HHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHS-CTTSEEEEECB-------CT---------------------
T ss_pred HHHHHHHCCCCEEEECCCcCccCHHHHHHHHHHHHHhc-CCCceEEEEEC-------CC---------------------
Confidence 88889999999999999888888999999999999851 00123555321 11
Q ss_pred CCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 186 ~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+...++|||+. |++- |+=...||...+.+-..+...|
T Consensus 205 -----~G~a---vAn~laA~~aGa~~--vd~tv~GlG~~aGN~~le~lv~~L~~~g 250 (345)
T 1nvm_A 205 -----LSLG---VANSIVAVEEGCDR--VDASLAGMGAGAGNAPLEVFIAVAERLG 250 (345)
T ss_dssp -----TSCH---HHHHHHHHHTTCCE--EEEBGGGCSSTTCBCBHHHHHHHHHHHT
T ss_pred -----ccHH---HHHHHHHHHcCCCE--EEecchhccCCccCcCHHHHHHHHHhcC
Confidence 2333 66778899999986 5765 8888899999887766666544
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.75 Score=42.37 Aligned_cols=79 Identities=8% Similarity=0.090 Sum_probs=50.1
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccc------cCChhHHHHHHHHHHhC----------Ccee----cCCcHHHHHHHhC
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH----------DVYV----STGDWAEHLIRNG 99 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~----------gV~v----~~GtlfE~a~~qg 99 (299)
...+.+..+.+.++.|++=+-++|-. +...+.+.+.++-.++. ++++ .++ |- .
T Consensus 152 ~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~-~~-----~- 224 (336)
T 1f76_A 152 KDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPD-LS-----E- 224 (336)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSC-CC-----H-
T ss_pred HHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCC-CC-----H-
Confidence 34455555555678899888776543 33445556666665543 5544 333 21 1
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCccc
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNVGSLE 126 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (299)
+.+.++.+.+.+.|.|+|.+|+++..
T Consensus 225 -~~~~~~a~~l~~~Gvd~i~vsn~~~~ 250 (336)
T 1f76_A 225 -EELIQVADSLVRHNIDGVIATNTTLD 250 (336)
T ss_dssp -HHHHHHHHHHHHTTCSEEEECCCBCC
T ss_pred -HHHHHHHHHHHHcCCcEEEEeCCccc
Confidence 14677788999999999999998753
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.24 Score=42.92 Aligned_cols=101 Identities=10% Similarity=0.096 Sum_probs=74.9
Q ss_pred HHHHHHHhhccc-ccEEEeeCcc-----------cccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHH
Q 022296 42 VLEDIFESMGQF-VDGLKFSGGS-----------HSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GT-----------s~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~ 108 (299)
.+++.++.+.+. .|.+=+.... ...++++.+++.-++++++|+.++.. .+.. ...+.+++.++
T Consensus 23 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~----~~~~~~~~~i~ 98 (262)
T 3p6l_A 23 PLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA----EKSSDWEKMFK 98 (262)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC----SSTTHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC----ccHHHHHHHHH
Confidence 356666665555 7888887543 12345667899999999999987653 3322 23457999999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (299)
.|+.+|.+.|-+.-| .+.+.++.+.+++.|+++.-|-.
T Consensus 99 ~A~~lGa~~v~~~~~-----~~~~~~l~~~a~~~gv~l~~En~ 136 (262)
T 3p6l_A 99 FAKAMDLEFITCEPA-----LSDWDLVEKLSKQYNIKISVHNH 136 (262)
T ss_dssp HHHHTTCSEEEECCC-----GGGHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHcCCCEEEecCC-----HHHHHHHHHHHHHhCCEEEEEeC
Confidence 999999999999865 46778999999999998766655
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=1.8 Score=39.48 Aligned_cols=101 Identities=18% Similarity=0.299 Sum_probs=74.4
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcccccCChhHHHHHHHHHHhCCc----eecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV----YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV----~v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
....+..+++.+.+ -+..+.|.+|--.+.+ .+.+.++.+++.+. .+.| |+++ +++++.+++
T Consensus 51 s~e~i~~~i~~~~~~g~~~i~~tGGEPll~~--~l~~li~~~~~~~~~~~i~i~TNG~ll-----------~~~~~~L~~ 117 (340)
T 1tv8_A 51 TFDEMARIAKVYAELGVKKIRITGGEPLMRR--DLDVLIAKLNQIDGIEDIGLTTNGLLL-----------KKHGQKLYD 117 (340)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEESSCGGGST--THHHHHHHHTTCTTCCEEEEEECSTTH-----------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccchh--hHHHHHHHHHhCCCCCeEEEEeCccch-----------HHHHHHHHH
Confidence 55677777776544 3788999999988887 57899999998853 3445 6543 346677888
Q ss_pred cCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCcccceeee
Q 022296 113 VGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 113 lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.|++.|.||=-+.+ .+.+.-.+.|+.+++.|+.|...+-+
T Consensus 118 ~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~~v~i~~vv 168 (340)
T 1tv8_A 118 AGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVI 168 (340)
T ss_dssp HTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
Confidence 99999999977652 15677888999999999865554444
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.55 Score=46.37 Aligned_cols=147 Identities=15% Similarity=0.148 Sum_probs=93.5
Q ss_pred HHHHHhhcccccEEEeeCcccc------cCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhC----C-chHHHHHHHH
Q 022296 44 EDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG----P-SAFKEYVEDC 110 (299)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg----~-~~~~~yl~~~ 110 (299)
-+.|..+| +|.+-.|||.+. +.+ + =.+.++.+++. ++.+. .|.=..-..| | +-++.+++.+
T Consensus 36 a~~L~~~G--v~~IE~g~~atF~~~~r~~~~-d-~~e~l~~i~~~~~~~~l~--~l~R~~N~~G~~~~~ddv~~~~v~~a 109 (464)
T 2nx9_A 36 AQQLDQIG--YWSLECWGGATFDSCIRFLGE-D-PWQRLRLLKQAMPNTPLQ--MLLRGQNLLGYRHYADDVVDTFVERA 109 (464)
T ss_dssp HHHHHTSC--CSEEEEEETTHHHHHHHTTCC-C-HHHHHHHHHHHCSSSCEE--EEECGGGTTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHcC--CCEEEeCcCccccchhhccCC-C-HHHHHHHHHHhCCCCeEE--EEeccccccCcccccchhhHHHHHHH
Confidence 34556666 788999998762 233 2 23334444432 33221 1100000001 1 1368899999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccc
Q 022296 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIE 190 (299)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
.+.|.+.|-|.+.+-++ +.-...|+.+++.|..|..-+.-- . +. + .+
T Consensus 110 ~~~Gvd~i~if~~~sd~--~ni~~~i~~ak~~G~~v~~~i~~~--~---~~-----------~---------------~~ 156 (464)
T 2nx9_A 110 VKNGMDVFRVFDAMNDV--RNMQQALQAVKKMGAHAQGTLCYT--T---SP-----------V---------------HN 156 (464)
T ss_dssp HHTTCCEEEECCTTCCT--HHHHHHHHHHHHTTCEEEEEEECC--C---CT-----------T---------------CC
T ss_pred HhCCcCEEEEEEecCHH--HHHHHHHHHHHHCCCEEEEEEEee--e---CC-----------C---------------CC
Confidence 99999999999887776 455689999999998864333221 1 11 0 12
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhc
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~ 237 (299)
++.+ ++.+++..++||+.| .|+|..|-..+..+.++++.
T Consensus 157 ~e~~---~~~a~~l~~~Gad~I-----~l~DT~G~~~P~~v~~lv~~ 195 (464)
T 2nx9_A 157 LQTW---VDVAQQLAELGVDSI-----ALKDMAGILTPYAAEELVST 195 (464)
T ss_dssp HHHH---HHHHHHHHHTTCSEE-----EEEETTSCCCHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHCCCCEE-----EEcCCCCCcCHHHHHHHHHH
Confidence 6777 888999999999866 47888888888888777754
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.71 Score=42.94 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 46 ~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv------------------------- 100 (315)
T 3na8_A 46 ALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSV------------------------- 100 (315)
T ss_dssp HHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEec-------------------------
Confidence 67888999999999999876543 478999999999999883 0011111122
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCcccH
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRA 228 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~----~G~~r~ 228 (299)
...+..+. |+.++..-++|||.|++=.- -||+. .-++..
T Consensus 101 ---------g~~~t~~a---i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~ 168 (315)
T 3na8_A 101 ---------SDLTTAKT---VRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSV 168 (315)
T ss_dssp ---------CCSSHHHH---HHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCH
T ss_pred ---------CCCCHHHH---HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCH
Confidence 11125566 89999999999999999652 15663 236778
Q ss_pred HHHHHHHhccCCCce--EEec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 229 DIIAKVIGRLGLEKT--MFEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 229 d~i~~ii~~l~~ekl--ifEA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
+.+.+++.+.+ +| |=|+ .+-.+...+++..++++.+..-.++ +.+++|..|--|
T Consensus 169 ~~~~~L~a~~p--nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~D~-~~l~~l~~G~~G 225 (315)
T 3na8_A 169 ELILRIVREVD--NVTMVKESTGDIQRMHKLRLLGEGRVPFYNGCNP-LALEAFVAGAKG 225 (315)
T ss_dssp HHHHHHHHHST--TEEEEEECSSCHHHHHHHHHHTTTCSCEEECCGG-GHHHHHHHTCSE
T ss_pred HHHHHHHhcCC--CEEEEECCCCCHHHHHHHHHHcCCCEEEEeCchH-HHHHHHHCCCCE
Confidence 88888855554 33 2244 4566777788888888777654444 458888866433
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.64 Score=42.57 Aligned_cols=116 Identities=19% Similarity=0.265 Sum_probs=80.4
Q ss_pred hHHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccch
Q 022296 102 AFKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (299)
Q Consensus 102 ~~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~ 180 (299)
-+++| +++|+..|-|+|=+-+. .++.++..++++.+++.|+.+..|+.-
T Consensus 122 iid~~qv~~A~~~GAD~VlLi~a--~l~~~~l~~l~~~a~~lGl~~lvev~t---------------------------- 171 (272)
T 3qja_A 122 VVQPYQIHEARAHGADMLLLIVA--ALEQSVLVSMLDRTESLGMTALVEVHT---------------------------- 171 (272)
T ss_dssp CCSHHHHHHHHHTTCSEEEEEGG--GSCHHHHHHHHHHHHHTTCEEEEEESS----------------------------
T ss_pred ccCHHHHHHHHHcCCCEEEEecc--cCCHHHHHHHHHHHHHCCCcEEEEcCC----------------------------
Confidence 47787 99999999999988544 456778888999999998887654421
Q ss_pred hcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC-ceEEecCCc-hhHHHHHH
Q 022296 181 LFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATNP-RTSEWFIR 258 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e-klifEAP~k-~qQ~~fI~ 258 (299)
.+++ ++.+++||++|-+-.|.+-.- .+.-+.+.++...++.+ -++-|.=-. ..+..-+.
T Consensus 172 ----------~ee~-------~~A~~~Gad~IGv~~r~l~~~--~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~ 232 (272)
T 3qja_A 172 ----------EQEA-------DRALKAGAKVIGVNARDLMTL--DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYA 232 (272)
T ss_dssp ----------HHHH-------HHHHHHTCSEEEEESBCTTTC--CBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHH
T ss_pred ----------HHHH-------HHHHHCCCCEEEECCCccccc--ccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHH
Confidence 2233 666788999999988743211 23345577787777633 456665544 56777778
Q ss_pred HhCCCccc
Q 022296 259 RYGPKVNL 266 (299)
Q Consensus 259 ~fG~~VNL 266 (299)
..|.+-=+
T Consensus 233 ~~Gadgvl 240 (272)
T 3qja_A 233 GAGADAVL 240 (272)
T ss_dssp HTTCSEEE
T ss_pred HcCCCEEE
Confidence 88876444
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.25 Score=46.37 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cc
Q 022296 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KP 148 (299)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v--~~ 148 (299)
.+++-++.++++|..|..|- |..-.-+|+.+-+..+.+.+.|.+.|-+.|-.--+.+.+-.++|+.+++. +.- .-
T Consensus 123 ~~~~~v~~a~~~g~~v~f~~--~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~~ 199 (325)
T 3eeg_A 123 MAVAAVKQAKKVVHEVEFFC--EDAGRADQAFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDN-VSNIDKA 199 (325)
T ss_dssp TTHHHHHHHHTTSSEEEEEE--ETGGGSCHHHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHH-CSCGGGS
T ss_pred HHHHHHHHHHHCCCEEEEEc--cccccchHHHHHHHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHh-CCCCCce
Confidence 45688999999999887652 22234455567778888889999999999999999999999999999884 110 01
Q ss_pred eeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcc
Q 022296 149 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSL 226 (299)
Q Consensus 149 E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~ 226 (299)
.+++-+. .| .... +..+...++|||+. |++- |+=...||.
T Consensus 200 ~i~~H~H-------nd--------------------------~GlA---~AN~laA~~aGa~~--vd~tv~GlGer~GN~ 241 (325)
T 3eeg_A 200 ILSAHCH-------ND--------------------------LGLA---TANSLAALQNGARQ--VECTINGIGERAGNT 241 (325)
T ss_dssp EEEECBC-------CT--------------------------TSCH---HHHHHHHHHHTCCE--EEEBGGGCCSTTCCC
T ss_pred EEEEEeC-------CC--------------------------CCHH---HHHHHHHHHhCCCE--EEEecccccccccch
Confidence 3444321 11 2333 66678899999997 4664 888899999
Q ss_pred cHHHHHHHHh
Q 022296 227 RADIIAKVIG 236 (299)
Q Consensus 227 r~d~i~~ii~ 236 (299)
-.+.+-..+.
T Consensus 242 ~lE~vv~~L~ 251 (325)
T 3eeg_A 242 ALEEVVMAME 251 (325)
T ss_dssp BHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9887666554
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=93.04 E-value=1.4 Score=41.92 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=53.0
Q ss_pred HHHHHH---HhhcccccEEEeeCccc------ccCChhHHHHHHHHHHh--------CCc----eecCC-cHHHHHHHhC
Q 022296 42 VLEDIF---ESMGQFVDGLKFSGGSH------SLMPKPFIEEVVKRAHQ--------HDV----YVSTG-DWAEHLIRNG 99 (299)
Q Consensus 42 ~l~DlL---e~ag~yID~lKfg~GTs------~l~p~~~l~eKI~l~~~--------~gV----~v~~G-tlfE~a~~qg 99 (299)
..+|+. +..++|.|++=+=.||- .+..++.+.+.++..++ .++ ++.|+ +.
T Consensus 162 ~~~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~-------- 233 (367)
T 3zwt_A 162 AAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTS-------- 233 (367)
T ss_dssp HHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCH--------
T ss_pred CHHHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCH--------
Confidence 455555 45667788887766542 45667778888777654 344 44454 22
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccC
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i 127 (299)
+.+.++.+.|.+.|.|.|-+++.+...
T Consensus 234 -~~~~~ia~~~~~aGadgi~v~ntt~~r 260 (367)
T 3zwt_A 234 -QDKEDIASVVKELGIDGLIVTNTTVSR 260 (367)
T ss_dssp -HHHHHHHHHHHHHTCCEEEECCCBSCC
T ss_pred -HHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 257788899999999999999998654
|
| >3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A | Back alignment and structure |
|---|
Probab=93.03 E-value=0.98 Score=40.15 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCC-
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA- 174 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~- 174 (299)
.+++.++.++++||++||+..+. ..++.++..++-+.+++.|+++.+ +-.+. .+.. .+|.
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~h~~~-~~nl---------~s~d~ 85 (303)
T 3aal_A 19 MLLAASEEAASYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIEEIV---VHAPY-IINI---------GNTTN 85 (303)
T ss_dssp THHHHHHHHHHTTCSEEEEESSCTTCCCCCCSGGGCHHHHHHHHHHTTCCEEE---EECCT-TCCT---------TCSSC
T ss_pred cHHHHHHHHHHcCCCEEEEcCCCCCccCCCCCCHHHHHHHHHHHHHcCCceEE---Eeccc-cccC---------CCCCc
Confidence 58899999999999999994322 134467777888889999995322 21111 0000 0010
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHh---ccC----CCceEEec
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG---RLG----LEKTMFEA 247 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~---~l~----~eklifEA 247 (299)
+-..+ .+++.+ .+.++.+-+.||..|++-.-... +.-+.+..+.+++ .+. -=+|.+|.
T Consensus 86 ~~~r~---------~~~~~~---~~~i~~A~~lGa~~vv~h~g~~~---~~~~~~~~~~~~~~l~~l~~~a~gv~l~lEn 150 (303)
T 3aal_A 86 LDTFS---------LGVDFL---RAEIERTEAIGAKQLVLHPGAHV---GAGVEAGLRQIIRGLNEVLTREQNVQIALET 150 (303)
T ss_dssp HHHHH---------HHHHHH---HHHHHHHHHHTCSEEEECCEECT---TSCHHHHHHHHHHHHHHHCCSSCSCEEEEEC
T ss_pred HHHHH---------HHHHHH---HHHHHHHHHcCCCEEEECCCcCC---CCCHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 00000 124555 55566667789999988653221 1122222222222 221 13788887
Q ss_pred C---------CchhHHHHHHHhC--CCcccccCCCCc
Q 022296 248 T---------NPRTSEWFIRRYG--PKVNLFVDHSQV 273 (299)
Q Consensus 248 P---------~k~qQ~~fI~~fG--~~VNLgI~~~eV 273 (299)
- ...+-..+|+..+ |+|-+.+|...+
T Consensus 151 ~~~~~~~~~~t~~~~~~li~~v~~~~~vg~~lD~~H~ 187 (303)
T 3aal_A 151 MAGKGSECGRTFEELAYIIDGVAYNDKLSVCFDTCHT 187 (303)
T ss_dssp CCCCTTEECSSHHHHHHHHHHCTTGGGEEEEEEHHHH
T ss_pred CCCCCCccCCCHHHHHHHHHhcCCCCCEEEEEEccCH
Confidence 5 4456677999998 456554555443
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.71 Score=42.84 Aligned_cols=157 Identities=10% Similarity=0.082 Sum_probs=104.3
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCch
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSA 102 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~ 102 (299)
...++..+++ =+|.+-+...+|-.+.+ +.+++-|+.++++|+.|. .|--++- .-+++.
T Consensus 84 ~~~i~~a~~~---g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~--~~~~~~ 158 (307)
T 1ydo_A 84 QRGLENALEG---GINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEK--DVPIEQ 158 (307)
T ss_dssp HHHHHHHHHH---TCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTB--CCCHHH
T ss_pred HHhHHHHHhC---CcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCC--CCCHHH
Confidence 3455555654 36777766666544221 345788999999999884 2322221 223446
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
+.++.+.+.++|.+.|=|.|-.--+.+++-.++|+.+++. +. ...+++-+. .|
T Consensus 159 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~l~~H~H-------nd------------------ 211 (307)
T 1ydo_A 159 VIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLAR-FP-ANQIALHFH-------DT------------------ 211 (307)
T ss_dssp HHHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTT-SC-GGGEEEECB-------GG------------------
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CC-CCeEEEEEC-------CC------------------
Confidence 7777788899999999999988889999999999999884 21 113555321 11
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc------CCCcccHHHHHHHHhccC
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLG 239 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d------~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+...++|||+.|=.=--|+=. ..||...+.+-..+...|
T Consensus 212 --------~Gla---~AN~laAv~aGa~~vd~tv~GlGecp~a~graGN~~~E~lv~~L~~~g 263 (307)
T 1ydo_A 212 --------RGTA---LANMVTALQMGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMD 263 (307)
T ss_dssp --------GSCH---HHHHHHHHHHTCCEEEEBGGGCCEETTEEEEECBCBHHHHHHHHHHTT
T ss_pred --------CchH---HHHHHHHHHhCCCEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhcC
Confidence 2333 666788999999865333347766 789999887776665544
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=92.74 E-value=1.6 Score=43.07 Aligned_cols=149 Identities=11% Similarity=0.169 Sum_probs=104.9
Q ss_pred HHHHHhh-cccccEEEeeCcccccCChhHHHHHHHHHHhCCceec-----CCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 44 EDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 44 ~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~-----~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
+..++.+ ..=+|.+-+-..++-+ +.+++-|+.++++|..|. ..+. ..+++.+-+..+.+.+.|.+.
T Consensus 103 ~~~v~~a~~~Gvd~i~if~~~sd~---~ni~~~i~~ak~~G~~v~~~i~~~~~~-----~~~~e~~~~~a~~l~~~Gad~ 174 (464)
T 2nx9_A 103 DTFVERAVKNGMDVFRVFDAMNDV---RNMQQALQAVKKMGAHAQGTLCYTTSP-----VHNLQTWVDVAQQLAELGVDS 174 (464)
T ss_dssp HHHHHHHHHTTCCEEEECCTTCCT---HHHHHHHHHHHHTTCEEEEEEECCCCT-----TCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHhCCcCEEEEEEecCHH---HHHHHHHHHHHHCCCEEEEEEEeeeCC-----CCCHHHHHHHHHHHHHCCCCE
Confidence 3334333 3348888877665555 579999999999999762 2221 124446667777888999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhh
Q 022296 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINK 197 (299)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (299)
|=|.|-.--+.+.+-.++|+.+++. + .-.+++.+.. | ....
T Consensus 175 I~l~DT~G~~~P~~v~~lv~~l~~~-~--~~~i~~H~Hn-------d--------------------------~GlA--- 215 (464)
T 2nx9_A 175 IALKDMAGILTPYAAEELVSTLKKQ-V--DVELHLHCHS-------T--------------------------AGLA--- 215 (464)
T ss_dssp EEEEETTSCCCHHHHHHHHHHHHHH-C--CSCEEEEECC-------T--------------------------TSCH---
T ss_pred EEEcCCCCCcCHHHHHHHHHHHHHh-c--CCeEEEEECC-------C--------------------------CChH---
Confidence 9999988888899989999999885 2 2235553221 1 2223
Q ss_pred HHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccCCC
Q 022296 198 SRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
+..+...++|||+.| ++- |+=...||...+.+-..+...|.+
T Consensus 216 vAN~laAv~AGa~~V--D~ti~g~gertGN~~lE~lv~~L~~~g~~ 259 (464)
T 2nx9_A 216 DMTLLKAIEAGVDRV--DTAISSMSGTYGHPATESLVATLQGTGYD 259 (464)
T ss_dssp HHHHHHHHHTTCSEE--EEBCGGGCSTTSCCBHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHhCCCEE--EEeccccCCCCcCHHHHHHHHHHHhcCCC
Confidence 566688999999955 664 888889999988887777766543
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.92 Score=41.47 Aligned_cols=105 Identities=10% Similarity=0.123 Sum_probs=75.9
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccc-ccCChhHHH--------------HHHHHHHhCC--ceecCCcHHHHHHHhCC
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSH-SLMPKPFIE--------------EVVKRAHQHD--VYVSTGDWAEHLIRNGP 100 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs-~l~p~~~l~--------------eKI~l~~~~g--V~v~~GtlfE~a~~qg~ 100 (299)
.+..+.+++...-+- .|++=+|.=-| .+.+-..++ .-.++.++.- +++..=|++...+..|
T Consensus 26 ~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~Pivlm~Y~N~i~~~G- 104 (252)
T 3tha_A 26 NLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYG- 104 (252)
T ss_dssp CHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCSSEEEEECCHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCEEEEeccCHHHHhh-
Confidence 667888888877654 89999997443 122222333 3344444432 3333337888888886
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
+++|++.|++.|.|.+=|-| +|.|+..++.+.++++|+...+-+
T Consensus 105 --~e~F~~~~~~aGvdG~IipD----LP~eE~~~~~~~~~~~Gl~~I~lv 148 (252)
T 3tha_A 105 --LEKFVKKAKSLGICALIVPE----LSFEESDDLIKECERYNIALITLV 148 (252)
T ss_dssp --HHHHHHHHHHTTEEEEECTT----CCGGGCHHHHHHHHHTTCEECEEE
T ss_pred --HHHHHHHHHHcCCCEEEeCC----CCHHHHHHHHHHHHHcCCeEEEEe
Confidence 89999999999999999987 888899999999999988865544
|
| >3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.56 E-value=1.3 Score=38.34 Aligned_cols=128 Identities=11% Similarity=0.131 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCcccccccccccCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 174 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~s-evg~~~d~~~~~~~~~~ 174 (299)
.+++.++.++++||++||+.... ..++.++..++-+.+++.|+.. +.+-.+.. ...+ | |.
T Consensus 15 ~~~~~~~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~---~~~h~~~~~~l~s--~--------~~ 81 (270)
T 3aam_A 15 GVAGAVEEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALREASGGLP---AVIHASYLVNLGA--E--------GE 81 (270)
T ss_dssp HHHHHHHHHHHHTCSCEEEESSCTTCCSCCCCCHHHHHHHHHHHHHTTCCC---EEEECCTTCCTTC--S--------ST
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCce---EEEecCcccCCCC--C--------HH
Confidence 58889999999999999995532 2455778888889999999932 22311110 1111 1 11
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhc----cCCCceEEecC--
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR----LGLEKTMFEAT-- 248 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~----l~~eklifEAP-- 248 (299)
.+ ..+++.+ .+.++.+-+.||..|.+-.-.. .. +.-.+-+.++++. .|+ +|.+|.-
T Consensus 82 ~r-----------~~~~~~~---~~~i~~a~~lGa~~vv~h~g~~-~~--~~~~~~l~~l~~~a~~~~gv-~l~lEn~~~ 143 (270)
T 3aam_A 82 LW-----------EKSVASL---ADDLEKAALLGVEYVVVHPGSG-RP--ERVKEGALKALRLAGVRSRP-VLLVENTAG 143 (270)
T ss_dssp HH-----------HHHHHHH---HHHHHHHHHHTCCEEEECCCBS-CH--HHHHHHHHHHHHHHTCCSSS-EEEEECCCC
T ss_pred HH-----------HHHHHHH---HHHHHHHHHcCCCEEEECCCCC-CH--HHHHHHHHHHHHhhcccCCC-EEEEecCCC
Confidence 01 1125556 5566666678999998865322 11 1122333444433 343 7888875
Q ss_pred -------CchhHHHHHHHh
Q 022296 249 -------NPRTSEWFIRRY 260 (299)
Q Consensus 249 -------~k~qQ~~fI~~f 260 (299)
...+-..+++..
T Consensus 144 ~~~~~~~~~~~~~~l~~~v 162 (270)
T 3aam_A 144 GGEKVGARFEELAWLVADT 162 (270)
T ss_dssp CTTBSCCSHHHHHHHHTTS
T ss_pred CCCccCCCHHHHHHHHHhC
Confidence 344556677776
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=2 Score=39.06 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=73.3
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcccccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (299)
.+..+.+.++.+-+ -+..+-|.+|...+++.+.+.+.++.+++.++.+.. .+. .-++.++.+++.|++
T Consensus 85 s~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~~~~~~li~~i~~~~~~i~~s~g~----------l~~e~l~~L~~ag~~ 154 (348)
T 3iix_A 85 TPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDVISDIVKEIKKMGVAVTLSLGE----------WPREYYEKWKEAGAD 154 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEESCCGGGTTHHHHHHHHHHHTTSCEEEEECCC----------CCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHhcCceEEEecCC----------CCHHHHHHHHHhCCC
Confidence 34455555544333 277888999996677767899999999999887763 221 236778889999999
Q ss_pred EEEecCCcc----------cCChhHHHHHHHHHHHcCCcccc
Q 022296 117 TIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 117 ~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+-+|--+. .-+.+++.+.|+.+++.|+.+.+
T Consensus 155 ~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~ 196 (348)
T 3iix_A 155 RYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGA 196 (348)
T ss_dssp EEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeecc
Confidence 998875544 23778999999999999987443
|
| >2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.7 Score=40.67 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+++.++.++++||+.||+..... ...+..++.+.+++.|+++.+
T Consensus 42 ~~~~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~~~~l~~~gl~~~~ 86 (290)
T 2zvr_A 42 DLRKGMELAKRVGYQAVEIAVRDP--SIVDWNEVKILSEELNLPICA 86 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSCG--GGSCHHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHhCCCEEEEcCCCc--chhhHHHHHHHHHHcCCeEEE
Confidence 688999999999999999986532 235566788888999998644
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.092 Score=49.43 Aligned_cols=121 Identities=19% Similarity=0.331 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----CChhHHHHHHHHHH
Q 022296 71 FIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----IPEETLLRYVRLVK 140 (299)
Q Consensus 71 ~l~eKI~l~~~~-----gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----i~~~~r~~lI~~~~ 140 (299)
.+.|.|+-.++. +|++++..|.+--+. .+...++.+.+.+.|+|+|+||+|... .++.-..++++.++
T Consensus 196 ~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~--~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik 273 (340)
T 3gr7_A 196 FLGEVIDAVREVWDGPLFVRISASDYHPDGLT--AKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIR 273 (340)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEESCCCSTTSCC--GGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEeccccccCCCCC--HHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHH
Confidence 455666666553 456777655432111 125667788888899999999988642 12333456777777
Q ss_pred HcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHcc-CcEEEEecccc
Q 022296 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAG-ADMIMIDSDDV 219 (299)
Q Consensus 141 ~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~VIiEargi 219 (299)
+. +. +|=++. ++ ..+ .+.+++.|++| ||.|++ +|.+
T Consensus 274 ~~-~~-iPVi~~----------Gg---------------------I~s---------~e~a~~~L~~G~aD~V~i-GR~~ 310 (340)
T 3gr7_A 274 RE-AD-IPTGAV----------GL---------------------ITS---------GWQAEEILQNGRADLVFL-GREL 310 (340)
T ss_dssp HH-TT-CCEEEE----------SS---------------------CCC---------HHHHHHHHHTTSCSEEEE-CHHH
T ss_pred HH-cC-CcEEee----------CC---------------------CCC---------HHHHHHHHHCCCeeEEEe-cHHH
Confidence 73 00 121111 00 011 45568899999 999998 5654
Q ss_pred ccCCCcccHHHHHHHHhccCCC
Q 022296 220 CKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 220 ~d~~G~~r~d~i~~ii~~l~~e 241 (299)
.. +.+++.++.+.++.+
T Consensus 311 la-----nPdl~~ki~~~l~~~ 327 (340)
T 3gr7_A 311 LR-----NPYWPYAAARELGAK 327 (340)
T ss_dssp HH-----CTTHHHHHHHHTTCC
T ss_pred Hh-----CchHHHHHHHHCCCC
Confidence 43 257889999888854
|
| >3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* | Back alignment and structure |
|---|
Probab=92.33 E-value=0.58 Score=41.00 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+++.++.++++||+.||+....+ .++.++..++-+.+++.|+++..
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 65 (294)
T 3vni_A 18 DYKYYIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTV 65 (294)
T ss_dssp CHHHHHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEE
Confidence 689999999999999999997643 56788888999999999999765
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=92.21 E-value=2.1 Score=39.82 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 44 ~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv------------------------- 98 (315)
T 3si9_A 44 AFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGA------------------------- 98 (315)
T ss_dssp HHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeC-------------------------
Confidence 6788899999999999966543 3489999999999999883 0011111122
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCcccH
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRA 228 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~----~G~~r~ 228 (299)
...+..+. |+.++..-++|||-|++=.- -||+. .-++..
T Consensus 99 ---------g~~st~~a---i~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~ 166 (315)
T 3si9_A 99 ---------GSNSTSEA---VELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAV 166 (315)
T ss_dssp ---------CCSSHHHH---HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCH
T ss_pred ---------CCCCHHHH---HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCH
Confidence 11125566 89999999999999998662 15653 346778
Q ss_pred HHHHHHHhccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 229 DIIAKVIGRLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 229 d~i~~ii~~l~-~eklifEAP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
+.+.+++++.| +-=+=....+-.+...+++..++++.+.-- +|-+.+++|..|--|
T Consensus 167 ~~~~~La~~~pnIvgiKdssgd~~~~~~l~~~~~~~f~v~~G-~d~~~l~~l~~G~~G 223 (315)
T 3si9_A 167 ETMRDLCRDFKNIIGVKDATGKIERASEQREKCGKDFVQLSG-DDCTALGFNAHGGVG 223 (315)
T ss_dssp HHHHHHHHHCTTEEEEEECSCCTHHHHHHHHHHCSSSEEEES-CGGGHHHHHHTTCCE
T ss_pred HHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcCCCeEEEec-CHHHHHHHHHcCCCE
Confidence 88888886555 211112335667778888889888777533 345668888866444
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.11 E-value=1.8 Score=38.99 Aligned_cols=112 Identities=16% Similarity=0.212 Sum_probs=73.4
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhccc-ccEEEeeCccc-ccCChhHHH-----------------HHHHHHHhC--Cc
Q 022296 26 VTEMRSPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAHQH--DV 84 (299)
Q Consensus 26 lT~V~DkGl~~~~g~~~l~DlLe~ag~y-ID~lKfg~GTs-~l~p~~~l~-----------------eKI~l~~~~--gV 84 (299)
+++|. +|++ .+....++++..-+. +|.+.+|.=-+ .+++-..++ +-++..+++ ++
T Consensus 20 i~~i~-~g~p---~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 95 (262)
T 2ekc_A 20 VSYLM-VGYP---DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDI 95 (262)
T ss_dssp EEEEE-TTSS---CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTS
T ss_pred EEEec-CCCC---ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC
Confidence 44444 7773 555666666666666 99999986332 122222333 334444544 45
Q ss_pred eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 85 YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 85 ~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
++..=|..-.++..| +++|++.|++.|+|.+=+. ++|.++-.++++.++++|+.+.+
T Consensus 96 Pi~~m~y~n~v~~~g---~~~f~~~~~~aG~dgvii~----dl~~ee~~~~~~~~~~~gl~~i~ 152 (262)
T 2ekc_A 96 PFLLMTYYNPIFRIG---LEKFCRLSREKGIDGFIVP----DLPPEEAEELKAVMKKYVLSFVP 152 (262)
T ss_dssp CEEEECCHHHHHHHC---HHHHHHHHHHTTCCEEECT----TCCHHHHHHHHHHHHHTTCEECC
T ss_pred CEEEEecCcHHHHhh---HHHHHHHHHHcCCCEEEEC----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 443213445555554 7999999999999988886 56778889999999999988654
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.5 Score=42.11 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=58.2
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
++++.+.|.|.|-+.. +.-.+++...++++.+++.|+.+..++.-
T Consensus 94 i~~~~~aGad~I~l~~-~~~~~p~~l~~~i~~~~~~g~~v~~~v~t---------------------------------- 138 (229)
T 3q58_A 94 VDALAQAGADIIAFDA-SFRSRPVDIDSLLTRIRLHGLLAMADCST---------------------------------- 138 (229)
T ss_dssp HHHHHHHTCSEEEEEC-CSSCCSSCHHHHHHHHHHTTCEEEEECSS----------------------------------
T ss_pred HHHHHHcCCCEEEECc-cccCChHHHHHHHHHHHHCCCEEEEecCC----------------------------------
Confidence 6778999999997654 44445577789999999987776543211
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccC--CCcccHHHHHHHHh
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH--ADSLRADIIAKVIG 236 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~--~G~~r~d~i~~ii~ 236 (299)
.+.+++..++||++|.+-.+|.... ......+++.++.+
T Consensus 139 -----------~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~ 179 (229)
T 3q58_A 139 -----------VNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSH 179 (229)
T ss_dssp -----------HHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHT
T ss_pred -----------HHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHH
Confidence 3445888999999998877775442 22334566777665
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=92.03 E-value=0.74 Score=41.95 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=79.7
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+.+++..|-|+|=+.-. .++.++..++++.+++.|+.++-|+.-
T Consensus 116 i~ea~~~GAD~ilLi~a--~l~~~~l~~l~~~a~~lGl~~lvEv~~---------------------------------- 159 (251)
T 1i4n_A 116 VKLASSVGADAILIIAR--ILTAEQIKEIYEAAEELGMDSLVEVHS---------------------------------- 159 (251)
T ss_dssp HHHHHHTTCSEEEEEGG--GSCHHHHHHHHHHHHTTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEecc--cCCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 44599999999999877 467789999999999999998887753
Q ss_pred CccchhhhhhhHHHHHHHHHc-cCcEEEEeccccccCCCcccHHHHHHHHhccCCCc-eEEecCCc-hhHHHHHHHhCCC
Q 022296 187 PEIEVGVGINKSRRAERCLEA-GADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEK-TMFEATNP-RTSEWFIRRYGPK 263 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeA-GA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ek-lifEAP~k-~qQ~~fI~~fG~~ 263 (299)
.+.+++.+++ |++.|-|+-|++-.- .+.-+...+++..++.+. +|-|+=-. ..+...+... .+
T Consensus 160 -----------~eE~~~A~~l~g~~iIGinnr~l~t~--~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~ 225 (251)
T 1i4n_A 160 -----------REDLEKVFSVIRPKIIGINTRDLDTF--EIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VN 225 (251)
T ss_dssp -----------HHHHHHHHTTCCCSEEEEECBCTTTC--CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CS
T ss_pred -----------HHHHHHHHhcCCCCEEEEeCcccccC--CCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CC
Confidence 2334888999 999999999987442 344556677888887654 55577643 4555555555 44
Q ss_pred c
Q 022296 264 V 264 (299)
Q Consensus 264 V 264 (299)
.
T Consensus 226 a 226 (251)
T 1i4n_A 226 A 226 (251)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.67 Score=40.21 Aligned_cols=45 Identities=4% Similarity=0.058 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~G~~v 146 (299)
.+++.++.++++||++||+..... .++.++..++.+.+++.|+++
T Consensus 13 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 63 (285)
T 1qtw_A 13 GLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTS 63 (285)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCG
T ss_pred CHHHHHHHHHHcCCCEEEeeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 588999999999999999953322 356678888999999999985
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.75 Score=42.21 Aligned_cols=100 Identities=8% Similarity=0.093 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
.+.++.+.+.|++.|-|.+++-+ ++.++ -.+.|+.+++.|..|-.+++.-++. .++
T Consensus 86 ~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~-----e~~------- 153 (302)
T 2ftp_A 86 LKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGC-----PYD------- 153 (302)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCB-----TTT-------
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeC-----CcC-------
Confidence 46788888899999999887744 34333 3577899999999987777663321 111
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
. ..+++.+ ++.++...++||+.|-+ .|..|-..+..+.++++.+
T Consensus 154 ------~---------~~~~~~~---~~~~~~~~~~G~d~i~l-----~DT~G~~~P~~~~~lv~~l 197 (302)
T 2ftp_A 154 ------G---------DVDPRQV---AWVARELQQMGCYEVSL-----GDTIGVGTAGATRRLIEAV 197 (302)
T ss_dssp ------B---------CCCHHHH---HHHHHHHHHTTCSEEEE-----EESSSCCCHHHHHHHHHHH
T ss_pred ------C---------CCCHHHH---HHHHHHHHHcCCCEEEE-----eCCCCCcCHHHHHHHHHHH
Confidence 0 1237788 88899999999998754 4666666677666666544
|
| >2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=91.85 E-value=1.4 Score=39.10 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cC--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL-EI--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i--~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.+++.++.++++||++||+..... .+ +..+..++-+.+++.|+++.. ++. ..+... .+ + ...
T Consensus 37 ~~~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~---~~~~~~-~~--------~--~~~ 101 (296)
T 2g0w_A 37 SFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTE-VEY---ITQWGT-AE--------D--RTA 101 (296)
T ss_dssp CHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEE-EEC---BCCCSS-TT--------T--CCH
T ss_pred CHHHHHHHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHHcCCceEe-ehh---hhcccc-CC--------h--HHH
Confidence 789999999999999999975321 11 234556788888899998655 222 111111 01 0 000
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcc--cHHHHHHHHhc-cCCCceEEec------CC
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSL--RADIIAKVIGR-LGLEKTMFEA------TN 249 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~--r~d~i~~ii~~-l~~eklifEA------P~ 249 (299)
+ .++.+ .+.++..-+.||..|.+ +- ... -.+ -.+.+.++++. .|+ ++.+|. ..
T Consensus 102 ~----------~~~~~---~~~i~~A~~lGa~~v~~-g~--~~~-~~~~~~~~~l~~l~~~a~Gv-~l~lE~~~~~~~~~ 163 (296)
T 2g0w_A 102 E----------QQKKE---QTTFHMARLFGVKHINC-GL--LEK-IPEEQIIVALGELCDRAEEL-IIGLEFMPYSGVAD 163 (296)
T ss_dssp H----------HHHHH---HHHHHHHHHHTCCEEEE-CC--CSC-CCHHHHHHHHHHHHHHHTTS-EEEEECCTTSSSCS
T ss_pred H----------HHHHH---HHHHHHHHHcCCCEEEE-cC--CCC-CCHHHHHHHHHHHHHHhcCC-EEEEEecCCCCCCC
Confidence 0 02334 34455556779999988 32 211 111 12223333322 343 677785 34
Q ss_pred chhHHHHHHHhCC-CcccccCC
Q 022296 250 PRTSEWFIRRYGP-KVNLFVDH 270 (299)
Q Consensus 250 k~qQ~~fI~~fG~-~VNLgI~~ 270 (299)
..+-..+++..|+ +|-+.+|.
T Consensus 164 ~~~~~~l~~~v~~~~vgl~~D~ 185 (296)
T 2g0w_A 164 LQAAWRVAEACGRDNAQLICDT 185 (296)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEH
T ss_pred HHHHHHHHHHhCCCCeEEEEeh
Confidence 5566778999985 44443443
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=91.82 E-value=1.8 Score=39.57 Aligned_cols=103 Identities=17% Similarity=0.309 Sum_probs=67.6
Q ss_pred chhHHHHHHHhhc-ccccEEEeeCcc-cccCChhHH-----------------HHHHHHHHhC--CceecCCcHHHHHHH
Q 022296 39 SHNVLEDIFESMG-QFVDGLKFSGGS-HSLMPKPFI-----------------EEVVKRAHQH--DVYVSTGDWAEHLIR 97 (299)
Q Consensus 39 g~~~l~DlLe~ag-~yID~lKfg~GT-s~l~p~~~l-----------------~eKI~l~~~~--gV~v~~GtlfE~a~~ 97 (299)
.+..+.+++...- .=+|++=+|.=- -.+++-..+ -+.++-.|+. ++++..=|++.-.+.
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~ 109 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFA 109 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 4456666655544 348999999211 112222222 2334444443 344332267777777
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.| +++|++.|++.|+|.+=|. ++|.++..++++.++++|+.+.+
T Consensus 110 ~g---~e~f~~~~~~aGvdgvii~----Dlp~ee~~~~~~~~~~~gl~~i~ 153 (267)
T 3vnd_A 110 NG---IDEFYTKAQAAGVDSVLIA----DVPVEESAPFSKAAKAHGIAPIF 153 (267)
T ss_dssp HC---HHHHHHHHHHHTCCEEEET----TSCGGGCHHHHHHHHHTTCEEEC
T ss_pred hh---HHHHHHHHHHcCCCEEEeC----CCCHhhHHHHHHHHHHcCCeEEE
Confidence 76 8999999999999999996 57778888999999999888554
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.81 E-value=2 Score=39.18 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=.|+
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGv------------------------ 76 (292)
T 2vc6_A 22 ALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANG-RVPVIAGA------------------------ 76 (292)
T ss_dssp HHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCBEEEC------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEec------------------------
Confidence 6888999999999999987653 3489999999999999873 1 11111222
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--------c-----------------cccC---CC-ccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--------D-----------------VCKH---AD-SLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--------g-----------------i~d~---~G-~~r 227 (299)
...+..+. |+.++..-++|||.|++=.- | +|+. .| ++.
T Consensus 77 ----------g~~~t~~a---i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~ 143 (292)
T 2vc6_A 77 ----------GSNSTAEA---IAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIH 143 (292)
T ss_dssp ----------CCSSHHHH---HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCC
T ss_pred ----------CCccHHHH---HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCC
Confidence 11124556 89999999999999998652 1 5653 23 677
Q ss_pred HHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.+++++.+ +|+- |+ .+-.+...+++..++++.+.-- +|-+.+++|..|--|
T Consensus 144 ~~~~~~La~~~p--nIvgiK~s~gd~~~~~~~~~~~~~~f~v~~G-~d~~~~~~l~~G~~G 201 (292)
T 2vc6_A 144 VETLARIFEDCP--NVKGVXDATGNLLRPSLERMACGEDFNLLTG-EDGTALGYMAHGGHG 201 (292)
T ss_dssp HHHHHHHHHHCT--TEEEEEECSCCTHHHHHHHHHSCTTSEEEES-CGGGHHHHHHTTCCE
T ss_pred HHHHHHHHhhCC--CEEEEecCCCCHHHHHHHHHHcCCCEEEEEC-chHHHHHHHHcCCCE
Confidence 888888875343 4432 44 4667777888888877776433 455668888876544
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=1.2 Score=43.62 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=98.2
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHH
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~ 109 (299)
..++..+++- +|.+-+-..||-.+.+ +.+.+-++.++++|+.|..+ +|-++..+++.+-+.++.
T Consensus 114 ~di~~A~~aG---~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~--~eda~r~d~~~~~~v~~~ 188 (423)
T 3ivs_A 114 DDARVAVETG---VDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFS--SEDSFRSDLVDLLSLYKA 188 (423)
T ss_dssp HHHHHHHHTT---CSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEE--EESGGGSCHHHHHHHHHH
T ss_pred hhHHHHHHcC---CCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEE--EccCcCCCHHHHHHHHHH
Confidence 3455555543 5666666666654321 34556789999999988764 233344555566777788
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
+.+.|.+.|-+.|-.--+.+.+-.++|+.+++. +...+++.+.. |
T Consensus 189 ~~~~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~---~~~~i~~H~Hn-------d------------------------- 233 (423)
T 3ivs_A 189 VDKIGVNRVGIADTVGCATPRQVYDLIRTLRGV---VSCDIECHFHN-------D------------------------- 233 (423)
T ss_dssp HHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHH---CSSEEEEEEBC-------T-------------------------
T ss_pred HHHhCCCccccCCccCcCCHHHHHHHHHHHHhh---cCCeEEEEECC-------C-------------------------
Confidence 889999999999999888899999999999874 12245553221 1
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHH
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIA 232 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~ 232 (299)
.... +..+...++|||+ .||+- |+=+..||...+.+-
T Consensus 234 -~GlA---vAN~laAv~aGa~--~vd~ti~GlGERaGNa~Le~vv 272 (423)
T 3ivs_A 234 -TGMA---IANAYCALEAGAT--HIDTSILGIGERNGITPLGALL 272 (423)
T ss_dssp -TSCH---HHHHHHHHHTTCC--EEEEBGGGCSSTTCBCBHHHHH
T ss_pred -CchH---HHHHHHHHHhCCC--EEEEecccccCcccchhHHHHH
Confidence 2233 6667889999999 55665 999999998866553
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=2 Score=40.35 Aligned_cols=184 Identities=15% Similarity=0.142 Sum_probs=110.5
Q ss_pred EEeeCcccccCChhHHHHHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 022296 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 132 (299)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r 132 (299)
|-++-|+...++.+.+...+..+.+++|+|+. |..+ +.+..|-+.||+.|=+.--. +|.++=
T Consensus 46 lq~s~g~~~y~g~~~~~~~v~~~a~~~VPValHlDHg~~~------------e~~~~ai~~GFtSVMiDgS~--~p~eEN 111 (305)
T 1rvg_A 46 LALSEGAMKYGGRALTLMAVELAKEARVPVAVHLDHGSSY------------ESVLRALRAGFTSVMIDKSH--EDFETN 111 (305)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEEECSH------------HHHHHHHHTTCSEEEECCTT--SCHHHH
T ss_pred EECChhHHhhCCHHHHHHHHHHHHhCCCcEEEECCCCCCH------------HHHHHHHHcCCCeeeeCCCC--CCHHHH
Confidence 44444443333334444444444346666654 3333 44556778999999886554 454443
Q ss_pred ----HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHH-c
Q 022296 133 ----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLE-A 207 (299)
Q Consensus 133 ----~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe-A 207 (299)
.++++.+...|.-|--|+|.=-+ .+|. ..... .+..+| +|++. +++.+ -
T Consensus 112 i~~Tk~vv~~ah~~gvsVEaELG~vgg------~Ed~---~~~~~--~~~~yT--------~Peea-------~~Fv~~T 165 (305)
T 1rvg_A 112 VRETRRVVEAAHAVGVTVEAELGRLAG------IEEH---VAVDE--KDALLT--------NPEEA-------RIFMERT 165 (305)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCCCC------SCC-----------CCTTCC--------CHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccC------ccCC---ccccc--cccccC--------CHHHH-------HHHHHHH
Confidence 46788888899999999998311 1220 00000 001111 25555 55553 6
Q ss_pred cCcEEEEec---ccccc--CCCcccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhCCCccc--ccCCCCchhhhhh
Q 022296 208 GADMIMIDS---DDVCK--HADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYGPKVNL--FVDHSQVMDLECL 279 (299)
Q Consensus 208 GA~~VIiEa---rgi~d--~~G~~r~d~i~~ii~~l~~eklifEAP-~k~qQ~~fI~~fG~~VNL--gI~~~eVi~LE~L 279 (299)
|.|.+=+== -|.|. .+-.++.|.+++|-+.++.-=++==+. -|+..+..|+.||-++.= ||+.+|+- +|.
T Consensus 166 gvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~p~e~i~--~ai 243 (305)
T 1rvg_A 166 GADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIK--KAI 243 (305)
T ss_dssp CCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHH--HHH
T ss_pred CCCEEEEecCccccccCCCCCCccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhccccccCCCCCHHHHH--HHH
Confidence 988665432 28998 556899999999999888544444443 477788999999999876 47666653 244
Q ss_pred hcc
Q 022296 280 RGR 282 (299)
Q Consensus 280 R~~ 282 (299)
+.|
T Consensus 244 ~~G 246 (305)
T 1rvg_A 244 SLG 246 (305)
T ss_dssp HTT
T ss_pred HCC
Confidence 444
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=91.53 E-value=1.1 Score=41.88 Aligned_cols=113 Identities=14% Similarity=0.194 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCC--------------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG--------------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG--------------ti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~ 167 (299)
..+.|++.+|+.||..| ++== --.|..++-.++|+++++.||...+ =+ .
T Consensus 109 ~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~--~v---~----------- 171 (286)
T 2p10_A 109 VMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTP--YV---F----------- 171 (286)
T ss_dssp CHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECC--EE---C-----------
T ss_pred CHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEE--ec---C-----------
Confidence 58999999999999999 8776 3457778888999999998887433 11 0
Q ss_pred cccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc----ccccCCCcccH----HHHHHHH---h
Q 022296 168 GAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD----DVCKHADSLRA----DIIAKVI---G 236 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar----gi~d~~G~~r~----d~i~~ii---~ 236 (299)
+ .++++.-.+||||.|.+|-- |+....-.+.. +.++++. .
T Consensus 172 --------------------~---------~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~ 222 (286)
T 2p10_A 172 --------------------S---------PEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAAR 222 (286)
T ss_dssp --------------------S---------HHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHH
T ss_pred --------------------C---------HHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHH
Confidence 0 45568889999999999986 55444323222 2444444 4
Q ss_pred ccCCC-ceEEec-CC-chhHHHHHHHh
Q 022296 237 RLGLE-KTMFEA-TN-PRTSEWFIRRY 260 (299)
Q Consensus 237 ~l~~e-klifEA-P~-k~qQ~~fI~~f 260 (299)
++.++ .+|.-| |- ..+-+.++.+.
T Consensus 223 ~vnpdvivLc~gGpIstpeDv~~~l~~ 249 (286)
T 2p10_A 223 TIRDDIIILSHGGPIANPEDARFILDS 249 (286)
T ss_dssp HHCSCCEEEEESTTCCSHHHHHHHHHH
T ss_pred HhCCCcEEEecCCCCCCHHHHHHHHhc
Confidence 45555 456666 53 23345555555
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=91.45 E-value=2.2 Score=39.57 Aligned_cols=98 Identities=12% Similarity=0.117 Sum_probs=70.0
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcc--cccCChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHc
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGS--HSLMPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GT--s~l~p~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~l 113 (299)
.+.++.+.++.+.+ -++-+-|++|+ -...+.+.+.+.++.+++.|+.++ +|. .-++.++.+++.
T Consensus 100 s~eei~~~~~~~~~~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~g~~i~~t~G~-----------l~~e~l~~L~~a 168 (369)
T 1r30_A 100 EVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGT-----------LSESQAQRLANA 168 (369)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHTTSEEEEECSS-----------CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCC-----------CCHHHHHHHHHC
Confidence 44555555554322 36777887765 344566789999999999988654 242 235678889999
Q ss_pred CCCEEEecCCcc---------cCChhHHHHHHHHHHHcCCccc
Q 022296 114 GFDTIELNVGSL---------EIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 114 GF~~IEISdGti---------~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
|++.|-||=.+- .-+.+++.+.|+.+++.|+.+.
T Consensus 169 Gvd~v~i~les~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 211 (369)
T 1r30_A 169 GLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 211 (369)
T ss_dssp CCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEE
T ss_pred CCCEEeecCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeee
Confidence 999999886551 1456889999999999998654
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=91.33 E-value=1.1 Score=44.26 Aligned_cols=107 Identities=12% Similarity=0.167 Sum_probs=81.3
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+.+++..|-|+|=+.-.. ++.++..++++.+++.|+.++-|++-
T Consensus 123 i~ea~~~GAD~ILLi~a~--l~~~~l~~l~~~a~~lgm~~LvEvh~---------------------------------- 166 (452)
T 1pii_A 123 IYLARYYQADACLLMLSV--LDDDQYRQLAAVAHSLEMGVLTEVSN---------------------------------- 166 (452)
T ss_dssp HHHHHHTTCSEEEEETTT--CCHHHHHHHHHHHHHTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEEccc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 445999999999998885 66788999999999999998887754
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCC
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPK 263 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e-klifEAP~-k~qQ~~fI~~fG~~ 263 (299)
.+++++.+++||+.|-|+-|++-. -++.-+...+++..++.+ -+|-|+=- -.++...+..+ .+
T Consensus 167 -----------~eE~~~A~~lga~iIGinnr~L~t--~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~ 231 (452)
T 1pii_A 167 -----------EEEQERAIALGAKVVGINNRDLRD--LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-AN 231 (452)
T ss_dssp -----------HHHHHHHHHTTCSEEEEESEETTT--TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CS
T ss_pred -----------HHHHHHHHHCCCCEEEEeCCCCCC--CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CC
Confidence 233388999999999999998744 355677778888888755 36677763 34555555555 44
|
| >3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0 | Back alignment and structure |
|---|
Probab=91.30 E-value=2.3 Score=36.91 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.+++.++.++++||+.||+..-. ..+..++-+.+++.|+++.. ++. +..+...... .+++.+-..+
T Consensus 24 ~~~~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~l~~~gl~~~~-~~~--~~~~~~~~~~-----~~~~~~~~r~-- 89 (269)
T 3ngf_A 24 PFLERFRLAAEAGFGGVEFLFPY----DFDADVIARELKQHNLTQVL-FNM--PPGDWAAGER-----GMAAISGREQ-- 89 (269)
T ss_dssp CHHHHHHHHHHTTCSEEECSCCT----TSCHHHHHHHHHHTTCEEEE-EEC--CCSCTTTTCC-----BCTTCTTCHH--
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCcEEE-Eec--CCCccccCCC-----CcCCCccHHH--
Confidence 79999999999999999998521 23456788888999998754 221 1111000000 0011000000
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccH-------HHHHH---HHhccCCCceEEec----
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DIIAK---VIGRLGLEKTMFEA---- 247 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~-------d~i~~---ii~~l~~eklifEA---- 247 (299)
..++.+ .+.++.+-+.||..|.+-+ | . ..+.-+. +.+.+ +++..|+ +|.+|.
T Consensus 90 -------~~~~~~---~~~i~~A~~lGa~~v~~~~-g-~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~n~~ 155 (269)
T 3ngf_A 90 -------EFRDNV---DIALHYALALDCRTLHAMS-G-I-TEGLDRKACEETFIENFRYAADKLAPHGI-TVLVEPLNTR 155 (269)
T ss_dssp -------HHHHHH---HHHHHHHHHTTCCEEECCB-C-B-CTTSCHHHHHHHHHHHHHHHHHHHGGGTC-EEEECCCCTT
T ss_pred -------HHHHHH---HHHHHHHHHcCCCEEEEcc-C-C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEeeCCcc
Confidence 113344 4445556677999998854 3 2 2222111 22222 3344455 588894
Q ss_pred --C-----CchhHHHHHHHhCC-CcccccCCCCc
Q 022296 248 --T-----NPRTSEWFIRRYGP-KVNLFVDHSQV 273 (299)
Q Consensus 248 --P-----~k~qQ~~fI~~fG~-~VNLgI~~~eV 273 (299)
| ...+-..++++.|+ +|-+.+|...+
T Consensus 156 ~~~~~~~~~~~~~~~l~~~v~~~~vg~~~D~~h~ 189 (269)
T 3ngf_A 156 NMPGYFIVHQLEAVGLVKRVNRPNVAVQLDLYHA 189 (269)
T ss_dssp TSTTBSCCCHHHHHHHHHHHCCTTEEEEEEHHHH
T ss_pred cCccchhcCHHHHHHHHHHhCCCCCCeEEEhhhH
Confidence 2 45567889999984 45443554433
|
| >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.68 Score=41.77 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCC------cccC-----ChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG------SLEI-----PEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG------ti~i-----~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+++.++.++++||++||+... ...+ +.++..++-+.+++.|+++..
T Consensus 37 ~l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~ 94 (305)
T 3obe_A 37 DMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRISS 94 (305)
T ss_dssp THHHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHHCCCeEEE
Confidence 6999999999999999999854 1233 223677888889999998743
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=2 Score=38.89 Aligned_cols=63 Identities=10% Similarity=-0.015 Sum_probs=41.7
Q ss_pred cc-EEEeeCccc------cc-CChhHHHHHHHHHHhC-Cceec----CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022296 54 VD-GLKFSGGSH------SL-MPKPFIEEVVKRAHQH-DVYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 54 ID-~lKfg~GTs------~l-~p~~~l~eKI~l~~~~-gV~v~----~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (299)
.| ++=+.++|- .+ .+.+.+.+.++-.++. ++++. ++ | ....+.++.+.|.+.|.|.|-+
T Consensus 120 ~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~-~-------~~~~~~~~a~~~~~~G~d~i~v 191 (311)
T 1jub_A 120 FSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPY-F-------DLVHFDIMAEILNQFPLTYVNS 191 (311)
T ss_dssp CCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC-C-------SHHHHHHHHHHHTTSCCCEEEE
T ss_pred CCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCC-C-------CHHHHHHHHHHHHHcCCcEEEe
Confidence 35 555555432 22 2666778888888876 55443 33 2 1125677888999999999999
Q ss_pred cCCc
Q 022296 121 NVGS 124 (299)
Q Consensus 121 SdGt 124 (299)
++.+
T Consensus 192 ~~~~ 195 (311)
T 1jub_A 192 VNSI 195 (311)
T ss_dssp CCCE
T ss_pred cCCC
Confidence 9986
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.72 Score=42.73 Aligned_cols=132 Identities=16% Similarity=0.227 Sum_probs=77.7
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (299)
.+...+..+|- ++++=. + .++.+.+++.++.+++. +.++.- .++ +... .++++++.|.+.|+|.|++
T Consensus 27 ~la~av~~aG~-lG~i~~--~---~~~~~~~~~~i~~i~~~~~~p~gv-nl~---~~~~--~~~~~~~~a~~~g~d~V~~ 94 (332)
T 2z6i_A 27 DLAGAVSKAGG-LGIIGG--G---NAPKEVVKANIDKIKSLTDKPFGV-NIM---LLSP--FVEDIVDLVIEEGVKVVTT 94 (332)
T ss_dssp HHHHHHHHHTS-BEEEEC--T---TCCHHHHHHHHHHHHHHCCSCEEE-EEC---TTST--THHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHhCCC-cEEeCC--C---CCCHHHHHHHHHHHHHhcCCCEEE-Eec---CCCC--CHHHHHHHHHHCCCCEEEE
Confidence 45555666664 666622 2 23556677777777753 111111 111 0122 5889999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
+.|. | .++++.+++.|+++... + . . ++.
T Consensus 95 ~~g~---p----~~~i~~l~~~g~~v~~~--v----~------------------------------~---------~~~ 122 (332)
T 2z6i_A 95 GAGN---P----SKYMERFHEAGIIVIPV--V----P------------------------------S---------VAL 122 (332)
T ss_dssp CSSC---G----GGTHHHHHHTTCEEEEE--E----S------------------------------S---------HHH
T ss_pred CCCC---h----HHHHHHHHHcCCeEEEE--e----C------------------------------C---------HHH
Confidence 9883 3 24667777777665421 1 0 0 344
Q ss_pred HHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhcc
Q 022296 201 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l 238 (299)
++...++|||.|++++. |=... .....+++.++.+.+
T Consensus 123 a~~~~~~GaD~i~v~g~~~GG~~g-~~~~~~ll~~i~~~~ 161 (332)
T 2z6i_A 123 AKRMEKIGADAVIAEGMEAGGHIG-KLTTMTLVRQVATAI 161 (332)
T ss_dssp HHHHHHTTCSCEEEECTTSSEECC-SSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEEECCCCCCCCC-CccHHHHHHHHHHhc
Confidence 56778899999999875 21110 123346666666544
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=91.10 E-value=0.78 Score=40.83 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=58.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
++++.+.|.|.|-+... .-..++...++++.+++.|+.+..++.-
T Consensus 94 i~~~~~~Gad~V~l~~~-~~~~p~~l~~~i~~~~~~g~~v~~~v~t---------------------------------- 138 (232)
T 3igs_A 94 VDALAQAGAAIIAVDGT-ARQRPVAVEALLARIHHHHLLTMADCSS---------------------------------- 138 (232)
T ss_dssp HHHHHHHTCSEEEEECC-SSCCSSCHHHHHHHHHHTTCEEEEECCS----------------------------------
T ss_pred HHHHHHcCCCEEEECcc-ccCCHHHHHHHHHHHHHCCCEEEEeCCC----------------------------------
Confidence 57789999999977544 4344467778999999987775543211
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccC--CCcccHHHHHHHHhc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH--ADSLRADIIAKVIGR 237 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~--~G~~r~d~i~~ii~~ 237 (299)
.+.+++..++||++|.+-.+|.... ......+++.++.+.
T Consensus 139 -----------~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~ 180 (232)
T 3igs_A 139 -----------VDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA 180 (232)
T ss_dssp -----------HHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT
T ss_pred -----------HHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc
Confidence 3445788999999998877775442 223456777777653
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.87 Score=41.39 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=82.0
Q ss_pred ccEEEeeCccc-ccCCh-hHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----
Q 022296 54 VDGLKFSGGSH-SLMPK-PFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 54 ID~lKfg~GTs-~l~p~-~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti----- 125 (299)
+|.+=+|+-.+ -..|. +...+.++.+++. ++++.. |. .+ .+-++.+.+.|++.|-|+...-
T Consensus 40 v~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~--l~-----~n----~~~i~~a~~~G~~~V~i~~~~S~~h~~ 108 (295)
T 1ydn_A 40 YARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSV--LV-----PN----MKGYEAAAAAHADEIAVFISASEGFSK 108 (295)
T ss_dssp CSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEE--EC-----SS----HHHHHHHHHTTCSEEEEEEESCHHHHH
T ss_pred cCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEE--Ee-----CC----HHHHHHHHHCCCCEEEEEEecCHHHHH
Confidence 55666654322 22220 1234555555544 665532 21 22 3456788889999999986332
Q ss_pred ---cCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhH
Q 022296 126 ---EIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKS 198 (299)
Q Consensus 126 ---~i~~~~----r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 198 (299)
..+.++ -.+.|+.+++.|+.|-.+++.-++ ..+. . ..+++.+ +
T Consensus 109 ~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~-----~e~~-------------~---------~~~~~~~---~ 158 (295)
T 1ydn_A 109 ANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVE-----CPYD-------------G---------PVTPQAV---A 158 (295)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSE-----ETTT-------------E---------ECCHHHH---H
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEec-----CCcC-------------C---------CCCHHHH---H
Confidence 344443 245689999999998777765322 1111 0 1237788 8
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhc
Q 022296 199 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~ 237 (299)
+.++...++||+.|-+= |..|...+..+.++++.
T Consensus 159 ~~~~~~~~~G~d~i~l~-----Dt~G~~~P~~~~~lv~~ 192 (295)
T 1ydn_A 159 SVTEQLFSLGCHEVSLG-----DTIGRGTPDTVAAMLDA 192 (295)
T ss_dssp HHHHHHHHHTCSEEEEE-----ETTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEec-----CCCCCcCHHHHHHHHHH
Confidence 88899999999987653 56666666666666543
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.6 Score=43.35 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=104.5
Q ss_pred CCceecCCcHH--HHHHHhCCchHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeec
Q 022296 82 HDVYVSTGDWA--EHLIRNGPSAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMF 154 (299)
Q Consensus 82 ~gV~v~~Gtlf--E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~ 154 (299)
.||.+..=|.| +- -.=+.+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+
T Consensus 13 ~Gv~~a~vTPF~~~d-g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-rvpViaGv-- 88 (314)
T 3d0c_A 13 STISGINIVPFLEGT-REIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNG-RATVVAGI-- 88 (314)
T ss_dssp SSEEECCCCCBCTTT-CCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEE--
T ss_pred CceEEeeeccccCCC-CCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCC-CCeEEecC--
Confidence 56666555644 21 0111236888999999999999987543 3489999999999999873 1 11111122
Q ss_pred CCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-----------------
Q 022296 155 NKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD----------------- 217 (299)
Q Consensus 155 ~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar----------------- 217 (299)
.. +..+. |+.++..-++|||.|++=.-
T Consensus 89 --------------------------------g~-st~~a---i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~v 132 (314)
T 3d0c_A 89 --------------------------------GY-SVDTA---IELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNI 132 (314)
T ss_dssp --------------------------------CS-SHHHH---HHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHH
T ss_pred --------------------------------Cc-CHHHH---HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHH
Confidence 11 24556 88899999999999998652
Q ss_pred --------ccccCCCcccHHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCC--CcccccCCCCchhhhhhhcccC
Q 022296 218 --------DVCKHADSLRADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGP--KVNLFVDHSQVMDLECLRGRNL 284 (299)
Q Consensus 218 --------gi~d~~G~~r~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG~--~VNLgI~~~eVi~LE~LR~~~~ 284 (299)
-||+..|.+..+.+.++++ ..+|+- |+ .+-.+...+++..++ ++.+.--.+++..+++|..|--
T Consensus 133 a~a~~lPiilYn~tg~l~~~~~~~La~---~pnIvgiKdssgd~~~~~~~~~~~~~~~~f~v~~G~d~~~~~~~l~~G~~ 209 (314)
T 3d0c_A 133 IEALDAPSIIYFKDAHLSDDVIKELAP---LDKLVGIKYAINDIQRVTQVMRAVPKSSNVAFICGTAEKWAPFFYHAGAV 209 (314)
T ss_dssp HHHSSSCEEEEECCTTSCTHHHHHHTT---CTTEEEEEECCCCHHHHHHHHHHSCGGGCCEEEETTHHHHHHHHHHHTCC
T ss_pred HHhCCCCEEEEeCCCCcCHHHHHHHHc---CCCEEEEEeCCCCHHHHHHHHHhcCCCCCEEEEEeCcHHHHHHHHHcCCC
Confidence 1677556566777887763 345532 44 456667778888776 6666444444377888886643
Q ss_pred C
Q 022296 285 G 285 (299)
Q Consensus 285 G 285 (299)
|
T Consensus 210 G 210 (314)
T 3d0c_A 210 G 210 (314)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=90.72 E-value=0.94 Score=38.43 Aligned_cols=125 Identities=10% Similarity=0.115 Sum_probs=69.3
Q ss_pred chhH-HHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNV-LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~-l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
++++ .+...+.-+ |++=+.. ...++.+++-++.++++|+.+...- -+|....+.++.+.+.|.+.
T Consensus 65 ~~~~~~~~~~~~Ga---d~v~v~~----~~~~~~~~~~~~~~~~~g~~~~v~~-------~~~~t~~~~~~~~~~~g~d~ 130 (211)
T 3f4w_A 65 GGHFESQLLFDAGA---DYVTVLG----VTDVLTIQSCIRAAKEAGKQVVVDM-------ICVDDLPARVRLLEEAGADM 130 (211)
T ss_dssp CHHHHHHHHHHTTC---SEEEEET----TSCHHHHHHHHHHHHHHTCEEEEEC-------TTCSSHHHHHHHHHHHTCCE
T ss_pred chHHHHHHHHhcCC---CEEEEeC----CCChhHHHHHHHHHHHcCCeEEEEe-------cCCCCHHHHHHHHHHcCCCE
Confidence 3344 455554443 5555432 2234567888888888888654210 01123445567777888998
Q ss_pred EEecCCccc--CChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhh
Q 022296 118 IELNVGSLE--IPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGV 193 (299)
Q Consensus 118 IEISdGti~--i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (299)
|=++.|+-. .+.. -.+.++++++. .+.+....|+. ++
T Consensus 131 i~v~~g~~g~~~~~~-~~~~i~~l~~~~~~~~i~~~gGI~-------------------------------------~~- 171 (211)
T 3f4w_A 131 LAVHTGTDQQAAGRK-PIDDLITMLKVRRKARIAVAGGIS-------------------------------------SQ- 171 (211)
T ss_dssp EEEECCHHHHHTTCC-SHHHHHHHHHHCSSCEEEEESSCC-------------------------------------TT-
T ss_pred EEEcCCCcccccCCC-CHHHHHHHHHHcCCCcEEEECCCC-------------------------------------HH-
Confidence 887766421 1111 13455555553 23333333331 12
Q ss_pred hhhhHHHHHHHHHccCcEEEEeccccccCC
Q 022296 194 GINKSRRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 194 ~~~~i~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
+++..+++||+.|++= +.|+++.
T Consensus 172 ------~~~~~~~~Gad~vvvG-sai~~~~ 194 (211)
T 3f4w_A 172 ------TVKDYALLGPDVVIVG-SAITHAA 194 (211)
T ss_dssp ------THHHHHTTCCSEEEEC-HHHHTCS
T ss_pred ------HHHHHHHcCCCEEEEC-HHHcCCC
Confidence 2366789999999884 5687764
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=0.19 Score=46.86 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----CChhHHHHHHHHHH
Q 022296 71 FIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----IPEETLLRYVRLVK 140 (299)
Q Consensus 71 ~l~eKI~l~~~~-----gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----i~~~~r~~lI~~~~ 140 (299)
.+.|.++-.++. +|++++..|.+--+ ..+...++.+.+.+.|.++|+||+|+.. .++.....+++.++
T Consensus 196 ~~~eiv~avr~~v~~pv~vris~~~~~~~g~--~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir 273 (338)
T 1z41_A 196 FLREIIDEVKQVWDGPLFVRVSASDYTDKGL--DIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIR 273 (338)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEECCCCSTTSC--CHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEecCcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHH
Confidence 355666666543 33566654433100 0113556777888899999999999753 22223356777777
Q ss_pred HcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHcc-CcEEEEecccc
Q 022296 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAG-ADMIMIDSDDV 219 (299)
Q Consensus 141 ~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~VIiEargi 219 (299)
+. +++. .--+ ++ ..+ .+.+++.|++| ||.|++ +|.+
T Consensus 274 ~~-------~~iP--Vi~~---Gg---------------------i~s---------~~~a~~~l~~G~aD~V~i-GR~~ 310 (338)
T 1z41_A 274 EQ-------ADMA--TGAV---GM---------------------ITD---------GSMAEEILQNGRADLIFI-GREL 310 (338)
T ss_dssp HH-------HCCE--EEEC---SS---------------------CCS---------HHHHHHHHHTTSCSEEEE-CHHH
T ss_pred HH-------CCCC--EEEE---CC---------------------CCC---------HHHHHHHHHcCCceEEee-cHHH
Confidence 62 2221 1000 00 001 34558899999 999988 5655
Q ss_pred ccCCCcccHHHHHHHHhccC
Q 022296 220 CKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 220 ~d~~G~~r~d~i~~ii~~l~ 239 (299)
..+ .+++.++.+.++
T Consensus 311 i~n-----Pdl~~ki~~~~~ 325 (338)
T 1z41_A 311 LRD-----PFFARTAAKQLN 325 (338)
T ss_dssp HHC-----TTHHHHHHHHTT
T ss_pred HhC-----chHHHHHHcCCC
Confidence 432 567888887776
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=90.64 E-value=5.6 Score=36.73 Aligned_cols=133 Identities=18% Similarity=0.222 Sum_probs=81.2
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCC-ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (299)
.+......+| ++.++= + ..++.+.+++.++.+++.- .++--+.+. .+. .++++++.+.+.|.+.|.+
T Consensus 41 ~la~av~~aG-glG~i~----~-~~~~~~~l~~~i~~i~~~~~~p~gVnl~~----~~~--~~~~~~~~~~~~g~d~V~l 108 (326)
T 3bo9_A 41 TLAAAVSEAG-GLGIIG----S-GAMKPDDLRKAISELRQKTDKPFGVNIIL----VSP--WADDLVKVCIEEKVPVVTF 108 (326)
T ss_dssp HHHHHHHHTT-SBEEEE----C-TTCCHHHHHHHHHHHHTTCSSCEEEEEET----TST--THHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHhCC-CcEEeC----C-CCCCHHHHHHHHHHHHHhcCCCEEEEEec----cCC--CHHHHHHHHHHCCCCEEEE
Confidence 4555556666 566662 1 2246677888888888752 222112111 122 6789999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
+-|. | .++++.+++.|.++.+ .+ . + .+.
T Consensus 109 ~~g~---p----~~~~~~l~~~g~~v~~--~v---~-------------------------------s---------~~~ 136 (326)
T 3bo9_A 109 GAGN---P----TKYIRELKENGTKVIP--VV---A-------------------------------S---------DSL 136 (326)
T ss_dssp ESSC---C----HHHHHHHHHTTCEEEE--EE---S-------------------------------S---------HHH
T ss_pred CCCC---c----HHHHHHHHHcCCcEEE--Ec---C-------------------------------C---------HHH
Confidence 8773 4 3567788887766553 11 0 0 334
Q ss_pred HHHHHHccCcEEEEeccccccCCC-cccHHHHHHHHhcc
Q 022296 201 AERCLEAGADMIMIDSDDVCKHAD-SLRADIIAKVIGRL 238 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEargi~d~~G-~~r~d~i~~ii~~l 238 (299)
+++..++|||.|++++.+---..| ....+++.++.+.+
T Consensus 137 a~~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~ 175 (326)
T 3bo9_A 137 ARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSV 175 (326)
T ss_dssp HHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHc
Confidence 467789999999999852100112 23345666666544
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.43 E-value=2.1 Score=39.78 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCC
Q 022296 105 EYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~ 174 (299)
+-.+..-+.|..+|-|-|+.. -+|.++.++-|+.+++.+- -+.|-++- ..|.
T Consensus 101 ~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~--~~~~~i~a-------Rtda--------- 162 (287)
T 3b8i_A 101 RTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARV--DPALTIIA-------RTNA--------- 162 (287)
T ss_dssp HHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCC--STTSEEEE-------EEET---------
T ss_pred HHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCC--CCCcEEEE-------echh---------
Confidence 334445568999999999864 3788899999999999865 23444420 0110
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecC-CchhH
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTS 253 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP-~k~qQ 253 (299)
+ . -.++++ |++++...+||||.|.+|+- ...+++.+|.+.++.--+|.|-- .+..-
T Consensus 163 ---------a-~--~gl~~a---i~Ra~ay~eAGAd~i~~e~~--------~~~~~~~~i~~~~~~P~ii~~~g~~~~~~ 219 (287)
T 3b8i_A 163 ---------E-L--IDVDAV---IQRTLAYQEAGADGICLVGV--------RDFAHLEAIAEHLHIPLMLVTYGNPQLRD 219 (287)
T ss_dssp ---------T-T--SCHHHH---HHHHHHHHHTTCSEEEEECC--------CSHHHHHHHHTTCCSCEEEECTTCGGGCC
T ss_pred ---------h-h--cCHHHH---HHHHHHHHHcCCCEEEecCC--------CCHHHHHHHHHhCCCCEEEeCCCCCCCCC
Confidence 0 0 015677 99999999999999999963 23688999999888444477741 11222
Q ss_pred HHHHHHhCCCcccc
Q 022296 254 EWFIRRYGPKVNLF 267 (299)
Q Consensus 254 ~~fI~~fG~~VNLg 267 (299)
..=+...| ||+-
T Consensus 220 ~~eL~~lG--v~~v 231 (287)
T 3b8i_A 220 DARLARLG--VRVV 231 (287)
T ss_dssp HHHHHHTT--EEEE
T ss_pred HHHHHHcC--CcEE
Confidence 23355556 5554
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=90.21 E-value=3.8 Score=37.63 Aligned_cols=111 Identities=11% Similarity=0.106 Sum_probs=84.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+.+++..|-|+|=+..- .++.++..++++.+++.|+.++.|++-
T Consensus 135 i~ea~~~GAD~VlLi~a--~L~~~~l~~l~~~a~~lGl~~lvevh~---------------------------------- 178 (272)
T 3tsm_A 135 VYEARSWGADCILIIMA--SVDDDLAKELEDTAFALGMDALIEVHD---------------------------------- 178 (272)
T ss_dssp HHHHHHTTCSEEEEETT--TSCHHHHHHHHHHHHHTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEccc--ccCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 66789999999999766 457888899999999999988877642
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCCc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPKV 264 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e-klifEAP~-k~qQ~~fI~~fG~~V 264 (299)
.++ +++.+++||++|=+-.|++..- .+.-+...+++..++.+ -+|-|.=- ...+...+...|.+-
T Consensus 179 ----~eE-------l~~A~~~ga~iIGinnr~l~t~--~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~g 245 (272)
T 3tsm_A 179 ----EAE-------MERALKLSSRLLGVNNRNLRSF--EVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGT 245 (272)
T ss_dssp ----HHH-------HHHHTTSCCSEEEEECBCTTTC--CBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCE
T ss_pred ----HHH-------HHHHHhcCCCEEEECCCCCccC--CCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCE
Confidence 233 3788899999999988865332 34566777888888754 46777764 567788888888876
Q ss_pred cc
Q 022296 265 NL 266 (299)
Q Consensus 265 NL 266 (299)
=|
T Consensus 246 vL 247 (272)
T 3tsm_A 246 FL 247 (272)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=90.16 E-value=0.76 Score=39.79 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=71.5
Q ss_pred HHHHHHHhhccc-ccEEEeeCccc-ccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022296 42 VLEDIFESMGQF-VDGLKFSGGSH-SLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs-~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
.+++.++.+.+. .|.+=+..... .-++.+.+++..++++++|+.++. +.+.. +..+.+++.++.|+++|.+.|
T Consensus 31 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~----~~~~~~~~~i~~A~~lGa~~v 106 (257)
T 3lmz_A 31 DLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM----KSEEEIDRAFDYAKRVGVKLI 106 (257)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE----CSHHHHHHHHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc----CCHHHHHHHHHHHHHhCCCEE
Confidence 355555555544 67777765421 123456688999999999998775 32211 233478999999999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 022296 119 ELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (299)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (299)
=+.-| .+.+.++.+.+++.|+++.-|-.
T Consensus 107 ~~~p~-----~~~l~~l~~~a~~~gv~l~lEn~ 134 (257)
T 3lmz_A 107 VGVPN-----YELLPYVDKKVKEYDFHYAIHLH 134 (257)
T ss_dssp EEEEC-----GGGHHHHHHHHHHHTCEEEEECC
T ss_pred EecCC-----HHHHHHHHHHHHHcCCEEEEecC
Confidence 98654 57788899999999998666654
|
| >2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=1.5 Score=37.97 Aligned_cols=47 Identities=17% Similarity=0.360 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+++.++.++++||+.||+..... ..+..+..++.+.+++.|+++..
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 65 (290)
T 2qul_A 18 DFPATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMC 65 (290)
T ss_dssp CHHHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEEEE
T ss_pred cHHHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCceEE
Confidence 689999999999999999986542 33446777889999999999776
|
| >2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=89.95 E-value=1.5 Score=39.44 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCEEEecCCcc-cCC----hhHHHHHHHHHHHcCCc---ccc
Q 022296 105 EYVEDCKQVGFDTIELNVGSL-EIP----EETLLRYVRLVKSAGLK---AKP 148 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti-~i~----~~~r~~lI~~~~~~G~~---v~~ 148 (299)
+.++.++++||+.||++.... ..+ .++..++-+.+++.|++ +.+
T Consensus 35 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~l~~~gL~~~~i~~ 86 (335)
T 2qw5_A 35 AHIKKLQRFGYSGFEFPIAPGLPENYAQDLENYTNLRHYLDSEGLENVKIST 86 (335)
T ss_dssp HHHHHHHHTTCCEEEEECCCCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred HHHHHHHHhCCCEEEEecCCCcccccccchHHHHHHHHHHHHCCCCcceeEE
Confidence 899999999999999986543 222 36677888889999999 655
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=89.81 E-value=4.1 Score=37.55 Aligned_cols=130 Identities=20% Similarity=0.196 Sum_probs=94.7
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
+++| +.+++.+|=|+|=+-.. -++.++..++++.+++.||.|+-|+.-
T Consensus 114 id~yQI~eAr~~GADaILLI~a--~L~~~~l~~l~~~A~~lGl~~LvEVh~----------------------------- 162 (258)
T 4a29_A 114 VKESQIDDAYNLGADTVLLIVK--ILTERELESLLEYARSYGMEPLILIND----------------------------- 162 (258)
T ss_dssp CSHHHHHHHHHHTCSEEEEEGG--GSCHHHHHHHHHHHHHTTCCCEEEESS-----------------------------
T ss_pred ccHHHHHHHHHcCCCeeehHHh--hcCHHHHHHHHHHHHHHhHHHHHhcch-----------------------------
Confidence 5555 67899999999976544 367888899999999999999988754
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCce-EEecC-CchhHHHHHHH
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT-NPRTSEWFIRR 259 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ekl-ifEAP-~k~qQ~~fI~~ 259 (299)
.+++ ++.+++||+.|-|-.|.+- +-++.-+...+++..+|.+.+ |-|.= ....+...++.
T Consensus 163 ---------~~El-------~rAl~~~a~iIGINNRnL~--tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~ 224 (258)
T 4a29_A 163 ---------ENDL-------DIALRIGARFIGIMSRDFE--TGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRK 224 (258)
T ss_dssp ---------HHHH-------HHHHHTTCSEEEECSBCTT--TCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHH
T ss_pred ---------HHHH-------HHHhcCCCcEEEEeCCCcc--ccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHH
Confidence 1334 7889999999999998762 345567778889999987766 55655 34567888999
Q ss_pred hCCCccc-c---cCCCCchhhhhhhccc
Q 022296 260 YGPKVNL-F---VDHSQVMDLECLRGRN 283 (299)
Q Consensus 260 fG~~VNL-g---I~~~eVi~LE~LR~~~ 283 (299)
.|.+-=| | +...| ++..|..|.
T Consensus 225 ~G~~a~LVGealmr~~d--~~~~Li~G~ 250 (258)
T 4a29_A 225 LGVNAFLISSSLMRNPE--KIKELIEGS 250 (258)
T ss_dssp TTCCEEEECHHHHHCTT--HHHHHHC--
T ss_pred CCCCEEEECHHHhCCCc--HHHHHHcCc
Confidence 9988666 4 33333 345555443
|
| >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A | Back alignment and structure |
|---|
Probab=89.71 E-value=0.64 Score=39.98 Aligned_cols=139 Identities=17% Similarity=0.267 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHcCCCEEEec-CCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELN-VGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS-dGti~--i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.+++.++.++++||+.||+. ..... ++.....++.+.+++.|+++.+ ++.-.+. .+ .|+ ..+
T Consensus 15 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~---~~-~~~--------~~~-- 79 (278)
T 1i60_A 15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLA-LNALVFF---NN-RDE--------KGH-- 79 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEE-EEEEECC---SS-CCH--------HHH--
T ss_pred CHHHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCeee-ecccccc---cc-CCH--------HHH--
Confidence 68899999999999999998 54331 2345566788888889998754 4332111 11 010 000
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccH-------HH---HHHHHhccCCCceEEecC
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DI---IAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~-------d~---i~~ii~~l~~eklifEAP 248 (299)
+ -.++.+ .+.++.+-+.||..|.+=+ |.... +.-+. +. +.++++..|+ ++.+|.-
T Consensus 80 ~---------~~~~~~---~~~i~~a~~lG~~~v~~~~-g~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lEn~ 144 (278)
T 1i60_A 80 N---------EIITEF---KGMMETCKTLGVKYVVAVP-LVTEQ-KIVKEEIKKSSVDVLTELSDIAEPYGV-KIALEFV 144 (278)
T ss_dssp H---------HHHHHH---HHHHHHHHHHTCCEEEEEC-CBCSS-CCCHHHHHHHHHHHHHHHHHHHGGGTC-EEEEECC
T ss_pred H---------HHHHHH---HHHHHHHHHcCCCEEEEec-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEec
Confidence 0 113444 4555556678999998833 21111 11011 11 2222333444 5777754
Q ss_pred --------CchhHHHHHHHhCC-CcccccCC
Q 022296 249 --------NPRTSEWFIRRYGP-KVNLFVDH 270 (299)
Q Consensus 249 --------~k~qQ~~fI~~fG~-~VNLgI~~ 270 (299)
+..+-..+++..|+ +|-+.+|.
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~D~ 175 (278)
T 1i60_A 145 GHPQCTVNTFEQAYEIVNTVNRDNVGLVLDS 175 (278)
T ss_dssp CCTTBSSCSHHHHHHHHHHHCCTTEEEEEEH
T ss_pred CCccchhcCHHHHHHHHHHhCCCCeeEEEEe
Confidence 34566788899984 55443443
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.49 E-value=1.2 Score=40.96 Aligned_cols=142 Identities=19% Similarity=0.186 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.+.++++++-+-|.+.|=+. ||. .|+.++|.++++.+.+. +=++.-=+|+
T Consensus 26 ~l~~lv~~li~~Gv~gl~v~-GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv------------------------ 80 (300)
T 3eb2_A 26 VMGRLCDDLIQAGVHGLTPL-GSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGV------------------------ 80 (300)
T ss_dssp HHHHHHHHHHHTTCSCBBTT-SGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEE------------------------
T ss_pred HHHHHHHHHHHcCCCEEEEC-ccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeC------------------------
Confidence 67888888889999999554 443 69999999999999883 1111111122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCC----Cccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~----G~~r 227 (299)
...+..+. |+.++..-++|||.|++=.- -||+.= -++.
T Consensus 81 ----------g~~~t~~a---i~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~ 147 (300)
T 3eb2_A 81 ----------ASTSVADA---VAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLT 147 (300)
T ss_dssp ----------EESSHHHH---HHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCC
T ss_pred ----------CCCCHHHH---HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCC
Confidence 01124556 88899999999999999652 156642 2566
Q ss_pred HHHHHHHHhccCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~~ekli--fEA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.++. +.+ +|+ =|+ .+-.+...+++..++++.++.-.++. .+++|..|--|
T Consensus 148 ~~~~~~La-~~p--nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~d~~-~~~~l~~G~~G 204 (300)
T 3eb2_A 148 LDVIARLA-EHP--RIRYIKDASTNTGRLLSIINRCGDALQVFSASAHI-PAAVMLIGGVG 204 (300)
T ss_dssp HHHHHHHH-TST--TEEEEEECSSBHHHHHHHHHHHGGGSEEEECTTSC-HHHHHHTTCCE
T ss_pred HHHHHHHH-cCC--CEEEEEcCCCCHHHHHHHHHHcCCCeEEEeCcHHH-HHHHHhCCCCE
Confidence 77888775 333 332 244 45566677888888777776544444 48888866433
|
| >3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=89.48 E-value=2.9 Score=37.82 Aligned_cols=71 Identities=23% Similarity=0.187 Sum_probs=47.7
Q ss_pred EEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHc-CCCEEEecCCcccCChhHHHH
Q 022296 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQV-GFDTIELNVGSLEIPEETLLR 134 (299)
Q Consensus 56 ~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~l-GF~~IEISdGti~i~~~~r~~ 134 (299)
.-|||.|++.+-. ..+....+|.| .+..+++.++.++++ ||++||+.-.. .. .++..+
T Consensus 7 ~~~~~~~~w~~~~------------~~~~f~~~g~~-------~~~~~~e~l~~aa~~~G~~~VEl~~~~-~~-~~~~~~ 65 (333)
T 3ktc_A 7 YPEFGAGLWHFAN------------YIDRYAVDGYG-------PALSTIDQINAAKEVGELSYVDLPYPF-TP-GVTLSE 65 (333)
T ss_dssp CCCEEEEGGGGSC------------CCCSSSTTCSS-------CCCCHHHHHHHHHHHSSEEEEEEEESC-ST-TCCHHH
T ss_pred CCcceeeeeeeec------------ccccccCCCCC-------CCCCHHHHHHHHHHhCCCCEEEecCCC-cc-hhHHHH
Confidence 3588888888755 12222222322 134799999999999 99999996111 11 356677
Q ss_pred HHHHHHHcCCccc
Q 022296 135 YVRLVKSAGLKAK 147 (299)
Q Consensus 135 lI~~~~~~G~~v~ 147 (299)
+-+.+++.|+++.
T Consensus 66 l~~~l~~~Gl~i~ 78 (333)
T 3ktc_A 66 VKDALKDAGLKAI 78 (333)
T ss_dssp HHHHHHHHTCEEE
T ss_pred HHHHHHHcCCeEE
Confidence 8888999999874
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=89.42 E-value=0.91 Score=42.19 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=62.6
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCC
Q 022296 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNP 187 (299)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
+..+. |.++|-|-||. ...+.|+.+.++|.+|.-.+|.+-. + .+.++.|..-. -.
T Consensus 114 rl~ka-Ga~aVklEdg~------~~~~~i~~l~~~GIpv~gHlgltPq-~------~~~~gg~~vqg-----------rt 168 (275)
T 3vav_A 114 KLMRA-GAQMVKFEGGE------WLAETVRFLVERAVPVCAHVGLTPQ-S------VHAFGGFKVQG-----------KT 168 (275)
T ss_dssp HHHHT-TCSEEEEECCG------GGHHHHHHHHHTTCCEEEEEESCGG-G------HHHHC---CCC-----------CS
T ss_pred HHHHc-CCCEEEECCch------hHHHHHHHHHHCCCCEEEecCCCce-E------EeccCCeEEEc-----------CC
Confidence 33444 99999999994 4478899999999999988886411 1 11111111110 01
Q ss_pred ccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCC
Q 022296 188 EIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 188 ~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
+-..+++ |++++..-+|||+.|.+|+= .++++++|.+++++
T Consensus 169 ~~~a~~~---i~rA~a~~eAGA~~ivlE~v---------p~~~a~~It~~l~i 209 (275)
T 3vav_A 169 EAGAAQL---LRDARAVEEAGAQLIVLEAV---------PTLVAAEVTRELSI 209 (275)
T ss_dssp HHHHHHH---HHHHHHHHHHTCSEEEEESC---------CHHHHHHHHHHCSS
T ss_pred HHHHHHH---HHHHHHHHHcCCCEEEecCC---------CHHHHHHHHHhCCC
Confidence 1125677 99999999999999999972 23355666655553
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=89.33 E-value=3.2 Score=41.78 Aligned_cols=146 Identities=11% Similarity=0.144 Sum_probs=98.9
Q ss_pred hcccccEEEeeCcccccCChhHHHHHHHHHHhCCcee--cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC
Q 022296 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (299)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i 127 (299)
...=+|.+-+-..++-+ +.+++-|+.++++|..+ +... |.....+++.+-+..+.+.++|.+.|=|-|-.--+
T Consensus 127 ~~aGvd~vrIf~s~sd~---~ni~~~i~~ak~~G~~v~~~i~~--~~~~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~ 201 (539)
T 1rqb_A 127 AENGMDVFRVFDAMNDP---RNMAHAMAAVKKAGKHAQGTICY--TISPVHTVEGYVKLAGQLLDMGADSIALKDMAALL 201 (539)
T ss_dssp HHTTCCEEEECCTTCCT---HHHHHHHHHHHHTTCEEEEEEEC--CCSTTCCHHHHHHHHHHHHHTTCSEEEEEETTCCC
T ss_pred HhCCCCEEEEEEehhHH---HHHHHHHHHHHHCCCeEEEEEEe--eeCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCc
Confidence 33448988887766655 67999999999999966 2110 00012233456666777788999999999988888
Q ss_pred ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHc
Q 022296 128 PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEA 207 (299)
Q Consensus 128 ~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA 207 (299)
.+.+-.++|+.++++ +...-.+++.+.. | .... +-.+...++|
T Consensus 202 ~P~~v~~lv~~l~~~-~p~~i~I~~H~Hn-------d--------------------------~GlA---vAN~laAveA 244 (539)
T 1rqb_A 202 KPQPAYDIIKAIKDT-YGQKTQINLHCHS-------T--------------------------TGVT---EVSLMKAIEA 244 (539)
T ss_dssp CHHHHHHHHHHHHHH-HCTTCCEEEEEBC-------T--------------------------TSCH---HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh-cCCCceEEEEeCC-------C--------------------------CChH---HHHHHHHHHh
Confidence 899889999999884 1001134443211 1 2233 5666889999
Q ss_pred cCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 208 GADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 208 GA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
||+.| ++- |+=...||...+.+-..+...|
T Consensus 245 Ga~~V--D~ti~g~GertGN~~lE~lv~~L~~~g 276 (539)
T 1rqb_A 245 GVDVV--DTAISSMSLGPGHNPTESVAEMLEGTG 276 (539)
T ss_dssp TCSEE--EEBCGGGCSTTSBCBHHHHHHHTTTSS
T ss_pred CCCEE--EEeccccCCCccChhHHHHHHHHHhcC
Confidence 99965 664 7877889988877766665544
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=89.33 E-value=1.8 Score=37.20 Aligned_cols=87 Identities=8% Similarity=-0.040 Sum_probs=50.5
Q ss_pred CceeEecCCCCCCcc--hhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCC
Q 022296 25 GVTEMRSPHYTLSSS--HNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGP 100 (299)
Q Consensus 25 GlT~V~DkGl~~~~g--~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~ 100 (299)
|...+.|-.+ + ++..+.+.+.+.+. .|++=+-. ....+. ++.++++ ||.+.|.|-.|....+-.
T Consensus 51 ~~~v~~D~kl----~DI~~t~~~~v~~~~~~Gad~vtvh~----~~g~~~----i~~~~~~~gv~vl~~t~~~~~~~~~~ 118 (208)
T 2czd_A 51 GVEIIADLKL----ADIPNTNRLIARKVFGAGADYVIVHT----FVGRDS----VMAVKELGEIIMVVEMSHPGALEFIN 118 (208)
T ss_dssp CCEEEEEEEE----CSCHHHHHHHHHHHHHTTCSEEEEES----TTCHHH----HHHHHTTSEEEEECCCCSGGGGTTTG
T ss_pred CCEEEEEeee----CchHHHHHHHHHHHHhcCCCEEEEec----cCCHHH----HHHHHHhCCcEEEEecCCcchhhHHH
Confidence 6677778777 3 33334433333322 34333321 122232 5566666 998888763332211002
Q ss_pred chHHHHHHHHHHcCCCEEEecCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVG 123 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG 123 (299)
+.++..+..+.+.||+.+-++..
T Consensus 119 ~~v~~~~~~a~~~G~~G~~~~~~ 141 (208)
T 2czd_A 119 PLTDRFIEVANEIEPFGVIAPGT 141 (208)
T ss_dssp GGHHHHHHHHHHHCCSEEECCCS
T ss_pred HHHHHHHHHHHHhCCcEEEECCC
Confidence 38999999999999999988865
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=89.32 E-value=2.5 Score=38.74 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=79.9
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (299)
.+-.....+| ++.++ +.++ +.+.+.+++.++.++++ +.++--+.+....+ .+..++++++.|.+.|.+.|.+
T Consensus 30 ~la~av~~aG-glG~i--~~~~--~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~--~~~~~~~~~~~~~~~g~d~V~~ 102 (328)
T 2gjl_A 30 EMAAAVANAG-GLATL--SALT--QPSPEALAAEIARCRELTDRPFGVNLTLLPTQ--KPVPYAEYRAAIIEAGIRVVET 102 (328)
T ss_dssp HHHHHHHHTT-SBCEE--ETTT--SSSHHHHHHHHHHHHHHCSSCCEEEEEECCCS--SCCCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCC-CeEEe--CCCC--CCCHHHHHHHHHHHHHhcCCCeEEEEeccccc--cCccHHHHHHHHHhcCCCEEEE
Confidence 4555556666 56666 2222 33356677777777653 21111111110000 1236899999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
+-|. | .++++.+++.|.++.+ .+ .+ .+.
T Consensus 103 ~~g~---p----~~~~~~l~~~gi~vi~--~v---~t----------------------------------------~~~ 130 (328)
T 2gjl_A 103 AGND---P----GEHIAEFRRHGVKVIH--KC---TA----------------------------------------VRH 130 (328)
T ss_dssp EESC---C----HHHHHHHHHTTCEEEE--EE---SS----------------------------------------HHH
T ss_pred cCCC---c----HHHHHHHHHcCCCEEe--eC---CC----------------------------------------HHH
Confidence 8763 4 3677888887776552 12 00 333
Q ss_pred HHHHHHccCcEEEEeccc---cccCCCcccHHHHHHHHhcc
Q 022296 201 AERCLEAGADMIMIDSDD---VCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEarg---i~d~~G~~r~d~i~~ii~~l 238 (299)
++...++|||.|++++.+ -.........+++.++.+.+
T Consensus 131 a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~ 171 (328)
T 2gjl_A 131 ALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL 171 (328)
T ss_dssp HHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC
T ss_pred HHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc
Confidence 467889999999998752 11111123456677776544
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=89.10 E-value=1.3 Score=40.45 Aligned_cols=144 Identities=11% Similarity=0.109 Sum_probs=87.1
Q ss_pred HHHHhhcccccEEEeeCccccc-CC--hhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022296 45 DIFESMGQFVDGLKFSGGSHSL-MP--KPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 45 DlLe~ag~yID~lKfg~GTs~l-~p--~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (299)
+.|..+| ||.+=+||+.+.- .| .+ ..+.++.+++. |+.+. .|. .+ .+-++.+.+.|.+.|-|
T Consensus 34 ~~L~~~G--v~~IE~g~~~~~~~~p~~~d-~~~~~~~~~~~~~~~~~--~l~-----~~----~~~i~~a~~ag~~~v~i 99 (298)
T 2cw6_A 34 DMLSEAG--LSVIETTSFVSPKWVPQMGD-HTEVLKGIQKFPGINYP--VLT-----PN----LKGFEAAVAAGAKEVVI 99 (298)
T ss_dssp HHHHHTT--CSEECCEECCCTTTCGGGTT-HHHHHHHSCCCTTCBCC--EEC-----CS----HHHHHHHHHTTCSEEEE
T ss_pred HHHHHcC--cCEEEECCCcCcccccccCC-HHHHHHHHhhCCCCEEE--EEc-----CC----HHhHHHHHHCCCCEEEE
Confidence 3444445 8899999876531 11 12 24444444443 44322 121 23 23477888899999999
Q ss_pred cCCcccCC------------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 121 NVGSLEIP------------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 121 SdGti~i~------------~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
+..+-+.- .+.-.+.|+.+++.|++|-- .+.. .++...+. .
T Consensus 100 ~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~--~l~~---~~~~~~~~----------------------~ 152 (298)
T 2cw6_A 100 FGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRG--YVSC---ALGCPYEG----------------------K 152 (298)
T ss_dssp EEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEE--EEET---TTCBTTTB----------------------S
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE--EEEE---EeeCCcCC----------------------C
Confidence 77554331 13445679999999998643 3321 11111110 1
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhc
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~ 237 (299)
.+++.+ ++.++...++||+.|- |+|..|-..+..+.++++.
T Consensus 153 ~~~~~~---~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~~~~lv~~ 193 (298)
T 2cw6_A 153 ISPAKV---AEVTKKFYSMGCYEIS-----LGDTIGVGTPGIMKDMLSA 193 (298)
T ss_dssp CCHHHH---HHHHHHHHHTTCSEEE-----EEETTSCCCHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHcCCCEEE-----ecCCCCCcCHHHHHHHHHH
Confidence 236778 8889999999999774 5677888888777777753
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=89.00 E-value=2.5 Score=40.31 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=98.6
Q ss_pred ccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022296 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (299)
+|.+-+-..+|-++.+ +.+++-++.++++|..|..+ .|.+...+|+.+-+..+.+.+.|.+.|-+.|
T Consensus 101 ~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~--~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~D 178 (370)
T 3rmj_A 101 KKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFS--CEDALRSEIDFLAEICGAVIEAGATTINIPD 178 (370)
T ss_dssp SEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEE--EETGGGSCHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEe--cCCCCccCHHHHHHHHHHHHHcCCCEEEecC
Confidence 5666666666655432 23455788999999877654 2334445556777888889999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-.--+.+.+-.++|+.+++. +.. .-.+++.+.. | .... +-.
T Consensus 179 T~G~~~P~~~~~lv~~l~~~-~~~~~~~~l~~H~Hn-------d--------------------------~GlA---vAN 221 (370)
T 3rmj_A 179 TVGYSIPYKTEEFFRELIAK-TPNGGKVVWSAHCHN-------D--------------------------LGLA---VAN 221 (370)
T ss_dssp SSSCCCHHHHHHHHHHHHHH-STTGGGSEEEEECBC-------T--------------------------TSCH---HHH
T ss_pred ccCCcCHHHHHHHHHHHHHh-CCCcCceEEEEEeCC-------C--------------------------CChH---HHH
Confidence 99999999999999999884 110 1235553221 1 2333 666
Q ss_pred HHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHH
Q 022296 201 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 235 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii 235 (299)
+...++|||+.| ++- |+=+..||.-.+.+-..+
T Consensus 222 ~laAv~aGa~~v--d~tv~GlGeraGN~~lE~vv~~L 256 (370)
T 3rmj_A 222 SLAALKGGARQV--ECTVNGLGERAGNASVEEIVMAL 256 (370)
T ss_dssp HHHHHHTTCCEE--EEBGGGCSSTTCBCBHHHHHHHH
T ss_pred HHHHHHhCCCEE--EEeccccCcccccccHHHHHHHH
Confidence 788999999965 664 888899999987665444
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=88.98 E-value=3.9 Score=38.14 Aligned_cols=92 Identities=11% Similarity=0.121 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
.+++++.|.+.|.+.|-|.+-.-++ +.-.+.|+.+++.|+.| ++...+. +
T Consensus 95 ~~~~i~~a~~aGvd~v~I~~~~s~~--~~~~~~i~~ak~~G~~v--~~~~~~a-----~--------------------- 144 (345)
T 1nvm_A 95 SVHDLKNAYQAGARVVRVATHCTEA--DVSKQHIEYARNLGMDT--VGFLMMS-----H--------------------- 144 (345)
T ss_dssp CHHHHHHHHHHTCCEEEEEEETTCG--GGGHHHHHHHHHHTCEE--EEEEEST-----T---------------------
T ss_pred cHHHHHHHHhCCcCEEEEEEeccHH--HHHHHHHHHHHHCCCEE--EEEEEeC-----C---------------------
Confidence 4678999999999999997422211 45568999999999875 4444211 0
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhc
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~ 237 (299)
..+++.+ .+.++...++||+.|- |+|-.|...+..+.++++.
T Consensus 145 -----~~~~e~~---~~ia~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~ 186 (345)
T 1nvm_A 145 -----MIPAEKL---AEQGKLMESYGATCIY-----MADSGGAMSMNDIRDRMRA 186 (345)
T ss_dssp -----SSCHHHH---HHHHHHHHHHTCSEEE-----EECTTCCCCHHHHHHHHHH
T ss_pred -----CCCHHHH---HHHHHHHHHCCCCEEE-----ECCCcCccCHHHHHHHHHH
Confidence 0126777 8888999999999774 5677777777776666643
|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=88.97 E-value=0.25 Score=43.42 Aligned_cols=150 Identities=12% Similarity=0.125 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc-----cccccccCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS-LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-----AFGAYVARAP 175 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~-----~~~~~~~~~~ 175 (299)
.+++.++.++++||++||+.... ..++.++..++.+.+++.|+++..- +.-+..... .|. .+ ....|..
T Consensus 22 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~g~~~---~~~~~~~~~~-~~~~~~~ 96 (290)
T 3tva_A 22 GLGVHLEVAQDLKVPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVI-FGGFDGESY---ADIPTTARTV-GLVPLET 96 (290)
T ss_dssp SSSBCHHHHHHTTCSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEE-ECCCTTCCC---SSHHHHHHHS-SSCSTTT
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEE-eeccCCccc---cccccccccc-CCCCHHH
Confidence 67888999999999999999743 3577888889999999999987552 211000000 000 00 0000110
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC-C-ccc--HHHHHHH---HhccCCCceEEecC
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA-D-SLR--ADIIAKV---IGRLGLEKTMFEAT 248 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~-G-~~r--~d~i~~i---i~~l~~eklifEAP 248 (299)
+ +..++.+ .+.++..-+.||..|++-+ |....+ . .++ .+.+.++ ++..|+ ++.+|.-
T Consensus 97 r-----------~~~~~~~---~~~i~~a~~lG~~~v~~~~-G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~ 160 (290)
T 3tva_A 97 R-----------ASRVAEM---KEISDFASWVGCPAIGLHI-GFVPESSSPDYSELVRVTQDLLTHAANHGQ-AVHLETG 160 (290)
T ss_dssp H-----------HHHHHHH---HHHHHHHHHHTCSEEEECC-CCCCCTTSHHHHHHHHHHHHHHHHHHTTTC-EEEEECC
T ss_pred H-----------HHHHHHH---HHHHHHHHHcCCCEEEEcC-CCCcccchHHHHHHHHHHHHHHHHHHHcCC-EEEEecC
Confidence 1 0113444 4445555667999999864 211111 0 110 1122223 334444 5666763
Q ss_pred --CchhHHHHHHHhC-CCcccccCCCC
Q 022296 249 --NPRTSEWFIRRYG-PKVNLFVDHSQ 272 (299)
Q Consensus 249 --~k~qQ~~fI~~fG-~~VNLgI~~~e 272 (299)
.+.+-..+++..| |+|-+-.|...
T Consensus 161 ~~~~~~~~~l~~~~~~~~~g~~~D~~h 187 (290)
T 3tva_A 161 QESADHLLEFIEDVNRPNLGINFDPAN 187 (290)
T ss_dssp SSCHHHHHHHHHHHCCTTEEEEECHHH
T ss_pred CCCHHHHHHHHHhcCCCCEEEEeccHH
Confidence 4567778999998 55555344433
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=88.94 E-value=1.6 Score=39.86 Aligned_cols=143 Identities=10% Similarity=0.066 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.++++++++-+-|.+.|=+.-.|- .|+.++|.++++.+.+. +=++.-=+|+
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv------------------------- 77 (291)
T 3tak_A 23 SLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGT------------------------- 77 (291)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------------------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeC-------------------------
Confidence 678889999999999996654443 78999999999999883 0011111122
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCcccH
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRA 228 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~----~G~~r~ 228 (299)
...+..+. |+.++..-++|||.|++=.- -+|+. .-++..
T Consensus 78 ---------g~~~t~~a---i~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~ 145 (291)
T 3tak_A 78 ---------GANSTREA---IELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSN 145 (291)
T ss_dssp ---------CCSSHHHH---HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCH
T ss_pred ---------CCCCHHHH---HHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCH
Confidence 11125566 89999999999999998762 15653 235677
Q ss_pred HHHHHHHhccCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 229 DIIAKVIGRLGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 229 d~i~~ii~~l~~ekli--fEA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
+.+.+++ +.+ +|+ =|+ .+..+...++++.++++.+.-- +|-+.+++|..|--|
T Consensus 146 ~~~~~La-~~p--nivgiK~ssgd~~~~~~~~~~~~~~f~v~~G-~d~~~~~~l~~G~~G 201 (291)
T 3tak_A 146 DTAVRLA-EIP--NIVGIKDATGDVPRGKALIDALNGKMAVYSG-DDETAWELMLLGADG 201 (291)
T ss_dssp HHHHHHT-TST--TEEEEEECSCCHHHHHHHHHHHTTSSEEEEC-CHHHHHHHHHTTCCE
T ss_pred HHHHHHH-cCC--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEEC-cHHHHHHHHHCCCCE
Confidence 7888776 343 332 244 5666777788888888776433 345567888766444
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=88.94 E-value=2.8 Score=38.41 Aligned_cols=108 Identities=14% Similarity=0.271 Sum_probs=71.7
Q ss_pred cCCCCCCcchhHHHHHHHhhcc-cccEEEeeCccc-ccCChhHHH-----------------HHHHHHHhC--CceecCC
Q 022296 31 SPHYTLSSSHNVLEDIFESMGQ-FVDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAHQH--DVYVSTG 89 (299)
Q Consensus 31 DkGl~~~~g~~~l~DlLe~ag~-yID~lKfg~GTs-~l~p~~~l~-----------------eKI~l~~~~--gV~v~~G 89 (299)
=.|+ |.+..+.+++...-+ -.|++=+|.=-| .+.+-..++ +.++-.|+. ++++..=
T Consensus 27 ~aGd---P~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm 103 (271)
T 3nav_A 27 TIGD---PNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLL 103 (271)
T ss_dssp ETTS---SCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred eCCC---CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3455 255666666665532 499999994321 122222333 344445544 3433322
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
|++...+..| +++|++.|++.|+|.+=|. ++|.++..++++.++++|+.+.+
T Consensus 104 ~Y~n~v~~~g---~~~f~~~~~~aGvdGvIip----Dlp~ee~~~~~~~~~~~gl~~I~ 155 (271)
T 3nav_A 104 MYANLVYARG---IDDFYQRCQKAGVDSVLIA----DVPTNESQPFVAAAEKFGIQPIF 155 (271)
T ss_dssp ECHHHHHHTC---HHHHHHHHHHHTCCEEEET----TSCGGGCHHHHHHHHHTTCEEEE
T ss_pred ecCcHHHHHh---HHHHHHHHHHCCCCEEEEC----CCCHHHHHHHHHHHHHcCCeEEE
Confidence 6778877775 8999999999999999886 57778888999999999887544
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=88.88 E-value=1 Score=41.92 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=91.4
Q ss_pred HHHHHHHhhcccccEEEeeCccc----------ccCChhHHHHHHHHHHhCCc-eec----CCcH---HHHHHHhCCchH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSH----------SLMPKPFIEEVVKRAHQHDV-YVS----TGDW---AEHLIRNGPSAF 103 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs----------~l~p~~~l~eKI~l~~~~gV-~v~----~Gtl---fE~a~~qg~~~~ 103 (299)
..--+++.+| +|.+=.|.... .++-.+.+..-=.+++.... .+. .|++ -|.++
T Consensus 45 ~sA~l~e~aG--~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~------- 115 (281)
T 1oy0_A 45 STARIFDEAG--IPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAAL------- 115 (281)
T ss_dssp HHHHHHHTTT--CCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHH-------
T ss_pred HHHHHHHHcC--CCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCCCcccCCHHHHH-------
Confidence 3445566665 78884443222 12233444444455555653 222 2443 23332
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
+--.+..++-|.++|-|-|| ++....|+.+.++|..|.-.+|..-. .+ ..++.|..-
T Consensus 116 ~na~rl~~eaGa~aVklEdg------~e~~~~I~al~~agIpV~gHiGLtPq--sv-----~~~ggf~v~---------- 172 (281)
T 1oy0_A 116 AAATRFLKDGGAHAVKLEGG------ERVAEQIACLTAAGIPVMAHIGFTPQ--SV-----NTLGGFRVQ---------- 172 (281)
T ss_dssp HHHHHHHHTTCCSEEEEEBS------GGGHHHHHHHHHHTCCEEEEEECCC-----------------------------
T ss_pred HHHHHHHHHhCCeEEEECCc------HHHHHHHHHHHHCCCCEEeeecCCcc--ee-----cccCCeEEE----------
Confidence 22456678899999999999 46688999999999988888887421 11 111111110
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
+- .+ ..+++ |++++...+|||+.|.+|+- ..++.++|.+.+++-
T Consensus 173 gr-t~-~a~~~---i~rA~a~~eAGA~~ivlE~v---------p~~~a~~it~~l~iP 216 (281)
T 1oy0_A 173 GR-GD-AAEQT---IADAIAVAEAGAFAVVMEMV---------PAELATQITGKLTIP 216 (281)
T ss_dssp ---CH-HHHHH---HHHHHHHHHHTCSEEEEESC---------CHHHHHHHHHHCSSC
T ss_pred eC-cH-HHHHH---HHHHHHHHHcCCcEEEEecC---------CHHHHHHHHHhCCCC
Confidence 00 12 35777 99999999999999999982 245677777766643
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=88.85 E-value=2.5 Score=45.00 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=50.0
Q ss_pred hhHHHHHHHhh-cccccEEEee-----------CcccccCChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHH
Q 022296 40 HNVLEDIFESM-GQFVDGLKFS-----------GGSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKE 105 (299)
Q Consensus 40 ~~~l~DlLe~a-g~yID~lKfg-----------~GTs~l~p~~~l~eKI~l~~~~-gV~v~~-GtlfE~a~~qg~~~~~~ 105 (299)
+..+.++.+.+ ....|++=+- +|++.....+.+.+.++-.+++ +++|.. .. .+...+.+
T Consensus 647 ~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~-------~~~~~~~~ 719 (1025)
T 1gte_A 647 KNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLT-------PNVTDIVS 719 (1025)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEEC-------SCSSCHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeC-------CChHHHHH
Confidence 44555555544 2346666664 4555556778899999999887 655542 11 01124677
Q ss_pred HHHHHHHcCCCEEEecCCc
Q 022296 106 YVEDCKQVGFDTIELNVGS 124 (299)
Q Consensus 106 yl~~~k~lGF~~IEISdGt 124 (299)
+.+.+.+.|.|+|-+||.+
T Consensus 720 ~a~~~~~~G~d~i~v~Nt~ 738 (1025)
T 1gte_A 720 IARAAKEGGADGVTATNTV 738 (1025)
T ss_dssp HHHHHHHHTCSEEEECCCE
T ss_pred HHHHHHHcCCCEEEEeccc
Confidence 7888999999999998754
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.52 E-value=1.2 Score=40.91 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~-~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-= ++.-=+|+ .
T Consensus 25 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv---g--------------------- 80 (294)
T 3b4u_A 25 AMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGV---L--------------------- 80 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEE---C---------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC---C---------------------
Confidence 67888999999999999887653 47999999999999998411 11111233 1
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
..+..+. |+.++..-++|||.|++=.-
T Consensus 81 ----------~~~t~~a---i~la~~A~~~Gadavlv~~P 107 (294)
T 3b4u_A 81 ----------VDSIEDA---ADQSAEALNAGARNILLAPP 107 (294)
T ss_dssp ----------CSSHHHH---HHHHHHHHHTTCSEEEECCC
T ss_pred ----------CccHHHH---HHHHHHHHhcCCCEEEEcCC
Confidence 1124556 88899999999999998654
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=88.32 E-value=6.8 Score=40.74 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=101.2
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceec-----CCcHHHHHHHh--CCchHHHHHHHHHHcCCCEEEecCCc
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWAEHLIRN--GPSAFKEYVEDCKQVGFDTIELNVGS 124 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~-----~GtlfE~a~~q--g~~~~~~yl~~~k~lGF~~IEISdGt 124 (299)
.=+|.+-+-..++ .-+.++.-++.++++|..+. +|.| |-.... +++.+-+..+.+.+.|.+.|=|-|-.
T Consensus 209 ~Gvd~irIf~s~n---~l~~l~~~i~~ak~~G~~v~~~i~~~~d~-~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~ 284 (718)
T 3bg3_A 209 NGMDVFRVFDSLN---YLPNMLLGMEAAGSAGGVVEAAISYTGDV-ADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMA 284 (718)
T ss_dssp HTCCEEEEECSSC---CHHHHHHHHHHHHTTTSEEEEEEECCSCT-TCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTT
T ss_pred cCcCEEEEEecHH---HHHHHHHHHHHHHHcCCeEEEEEEeeccc-cCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcC
Confidence 3488888776444 45689999999999997642 3333 322211 22345566666778999999999999
Q ss_pred ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHH
Q 022296 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERC 204 (299)
Q Consensus 125 i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 204 (299)
--+.+.+-.++|+.++++ +. ...+++.+.. | .... +-.....
T Consensus 285 G~~~P~~v~~lV~~lk~~-~p-~~~I~~H~Hn-------d--------------------------~GlA---vANslaA 326 (718)
T 3bg3_A 285 GLLKPTACTMLVSSLRDR-FP-DLPLHIHTHD-------T--------------------------SGAG---VAAMLAC 326 (718)
T ss_dssp SCCCHHHHHHHHHHHHHH-ST-TCCEEEECCC-------T--------------------------TSCH---HHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHh-CC-CCeEEEEECC-------C--------------------------ccHH---HHHHHHH
Confidence 999999999999999984 10 2235553221 1 2233 5566889
Q ss_pred HHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 205 LEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 205 LeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
++|||+.|=.=-.|+=...||...+.+-..+...+.+
T Consensus 327 veAGa~~VD~ti~GlGertGN~~lE~vv~~L~~~g~~ 363 (718)
T 3bg3_A 327 AQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLD 363 (718)
T ss_dssp HHTTCSEEEEBCGGGCSTTSCCBHHHHHHHHTTSTTC
T ss_pred HHhCCCEEEecCcccccccCchhHHHHHHHHHhcCCC
Confidence 9999996533335888899999988877777665543
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=88.17 E-value=0.41 Score=44.98 Aligned_cols=138 Identities=17% Similarity=0.252 Sum_probs=79.8
Q ss_pred ccEEEeeCcccccC---------------------ChhHHHHHHHHHHhC-------CceecCCcHHHHHHHhCCchHHH
Q 022296 54 VDGLKFSGGSHSLM---------------------PKPFIEEVVKRAHQH-------DVYVSTGDWAEHLIRNGPSAFKE 105 (299)
Q Consensus 54 ID~lKfg~GTs~l~---------------------p~~~l~eKI~l~~~~-------gV~v~~GtlfE~a~~qg~~~~~~ 105 (299)
.|++.+=.+.-+|. ....+.|.|+-.++. +|++++..|.+--+ ..+...+
T Consensus 166 fDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~--~~~~~~~ 243 (349)
T 3hgj_A 166 FQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGW--SLEDTLA 243 (349)
T ss_dssp CCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSC--CHHHHHH
T ss_pred CCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCC--CHHHHHH
Confidence 69998876653332 123456666666653 34666644432100 0013445
Q ss_pred HHHHHHHcCCCEEEecCCccc----C--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccc
Q 022296 106 YVEDCKQVGFDTIELNVGSLE----I--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTD 179 (299)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~----i--~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~ 179 (299)
+.+.+.+.|.|+|+||+|... + ++.....+++.+++. +++. .--+| .
T Consensus 244 la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~-------~~iP--Vi~~G---g--------------- 296 (349)
T 3hgj_A 244 FARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKR-------VGLR--TGAVG---L--------------- 296 (349)
T ss_dssp HHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHH-------HCCE--EEECS---S---------------
T ss_pred HHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHH-------cCce--EEEEC---C---------------
Confidence 667777889999999987542 1 232345677777763 2221 00000 0
Q ss_pred hhcccCCCccchhhhhhhHHHHHHHHHcc-CcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 180 KLFLASNPEIEVGVGINKSRRAERCLEAG-ADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
..+ .+.+++.|++| ||.|++ +|.+.. ..|++.++.+.++.+
T Consensus 297 ------i~t---------~e~a~~~l~~G~aD~V~i-GR~~la-----nPdl~~k~~~~l~~~ 338 (349)
T 3hgj_A 297 ------ITT---------PEQAETLLQAGSADLVLL-GRVLLR-----DPYFPLRAAKALGVA 338 (349)
T ss_dssp ------CCC---------HHHHHHHHHTTSCSEEEE-STHHHH-----CTTHHHHHHHHTTCC
T ss_pred ------CCC---------HHHHHHHHHCCCceEEEe-cHHHHh-----CchHHHHHHHHCCCC
Confidence 001 44568899999 999998 676553 257889999888843
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=87.55 E-value=3.3 Score=36.77 Aligned_cols=119 Identities=15% Similarity=0.209 Sum_probs=73.2
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
+.+.+++.- +|++=+ +++.+.+++.+++-++.+|++|+.+.... . .. +..+.+.++|+|+|=++
T Consensus 93 ~i~~~~~~G---ad~V~l--~~~~~~~p~~l~~~i~~~~~~g~~v~~~v--------~--t~-eea~~a~~~Gad~Ig~~ 156 (232)
T 3igs_A 93 DVDALAQAG---AAIIAV--DGTARQRPVAVEALLARIHHHHLLTMADC--------S--SV-DDGLACQRLGADIIGTT 156 (232)
T ss_dssp HHHHHHHHT---CSEEEE--ECCSSCCSSCHHHHHHHHHHTTCEEEEEC--------C--SH-HHHHHHHHTTCSEEECT
T ss_pred HHHHHHHcC---CCEEEE--CccccCCHHHHHHHHHHHHHCCCEEEEeC--------C--CH-HHHHHHHhCCCCEEEEc
Confidence 445555443 555533 34454444679999999999999877641 0 11 23456778999999543
Q ss_pred C-Cccc---CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhh
Q 022296 122 V-GSLE---IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINK 197 (299)
Q Consensus 122 d-Gti~---i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (299)
. |... ....+ .++++++++.+..|..+-|+. +
T Consensus 157 ~~g~t~~~~~~~~~-~~~i~~l~~~~ipvIA~GGI~---t---------------------------------------- 192 (232)
T 3igs_A 157 MSGYTTPDTPEEPD-LPLVKALHDAGCRVIAEGRYN---S---------------------------------------- 192 (232)
T ss_dssp TTTSSSSSCCSSCC-HHHHHHHHHTTCCEEEESCCC---S----------------------------------------
T ss_pred CccCCCCCCCCCCC-HHHHHHHHhcCCcEEEECCCC---C----------------------------------------
Confidence 2 2211 11112 367777777566666666662 0
Q ss_pred HHHHHHHHHccCcEEEEecccccc
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCK 221 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d 221 (299)
.+.+.+.+++||+-|+| +..|++
T Consensus 193 ~~d~~~~~~~GadgV~V-Gsal~~ 215 (232)
T 3igs_A 193 PALAAEAIRYGAWAVTV-GSAITR 215 (232)
T ss_dssp HHHHHHHHHTTCSEEEE-CHHHHC
T ss_pred HHHHHHHHHcCCCEEEE-ehHhcC
Confidence 23347789999999999 566764
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=87.53 E-value=1.3 Score=40.61 Aligned_cols=79 Identities=14% Similarity=0.189 Sum_probs=55.5
Q ss_pred chhHHHHHHHhhcccccEEEee------------CcccccCChhHHHHHHHHHHhC-Cceec----CCcHHHHHHHhCCc
Q 022296 39 SHNVLEDIFESMGQFVDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVS----TGDWAEHLIRNGPS 101 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg------------~GTs~l~p~~~l~eKI~l~~~~-gV~v~----~GtlfE~a~~qg~~ 101 (299)
.+..+.+..+.+-++.|.+-+- +|++.+-..+.+.+.++-.++. +++|. +| |-+ .+
T Consensus 69 ~~~~~~~aa~~a~~~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G-~~~------~~ 141 (318)
T 1vhn_A 69 EPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLG-WEK------NE 141 (318)
T ss_dssp CHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESC-SSS------CC
T ss_pred CHHHHHHHHHHHHHhCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCC-CCh------HH
Confidence 3556666666666668888774 5666777788889999888774 54443 33 311 12
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL 125 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti 125 (299)
.+ ++.+.+.+.|.++|.|+.++-
T Consensus 142 ~~-~~a~~l~~~G~d~i~v~g~~~ 164 (318)
T 1vhn_A 142 VE-EIYRILVEEGVDEVFIHTRTV 164 (318)
T ss_dssp HH-HHHHHHHHTTCCEEEEESSCT
T ss_pred HH-HHHHHHHHhCCCEEEEcCCCc
Confidence 33 888999999999999998764
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=87.47 E-value=1.6 Score=40.91 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=60.7
Q ss_pred hhHHHHHHHhhccc-ccEEEee------------CcccccCChhHHHHHHHHHHh-CCceecC----CcHHHHHHHhCCc
Q 022296 40 HNVLEDIFESMGQF-VDGLKFS------------GGSHSLMPKPFIEEVVKRAHQ-HDVYVST----GDWAEHLIRNGPS 101 (299)
Q Consensus 40 ~~~l~DlLe~ag~y-ID~lKfg------------~GTs~l~p~~~l~eKI~l~~~-~gV~v~~----GtlfE~a~~qg~~ 101 (299)
+..+.+..+.+-++ .|++=+. +|++.+-..+.+.+.++-.++ .+++|.. | |-+. ....
T Consensus 69 p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g-~~~~---~~~~ 144 (350)
T 3b0p_A 69 PKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLG-LEGK---ETYR 144 (350)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESC-BTTC---CCHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecC-cCcc---ccHH
Confidence 34455544444333 5665554 567777888889999988887 3665543 4 2221 0001
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC----------ChhHHHHHHHHHHHc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEI----------PEETLLRYVRLVKSA 142 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i----------~~~~r~~lI~~~~~~ 142 (299)
...++.+.+.+.|.++|-|+.++-.. +.-+ ..+|+.+++.
T Consensus 145 ~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~-~~~i~~ik~~ 194 (350)
T 3b0p_A 145 GLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLR-HDWVHRLKGD 194 (350)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCBC----------CCCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCccc-HHHHHHHHHh
Confidence 35677888999999999999976421 1112 4678877773
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=1.6 Score=40.49 Aligned_cols=95 Identities=17% Similarity=0.226 Sum_probs=63.5
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
..+ -|.++|-|-|| ++....|+.+.++|..|.-.+|..-. + + ..++.|..- +-+
T Consensus 104 l~k-aGa~aVklEdg------~e~~~~I~al~~agIpV~gHiGLtPQ-s-~-----~~~ggf~v~----------grt-- 157 (275)
T 1o66_A 104 LMA-AGAHMVKLEGG------VWMAETTEFLQMRGIPVCAHIGLTPQ-S-V-----FAFGGYKVQ----------GRG-- 157 (275)
T ss_dssp HHH-TTCSEEEEECS------GGGHHHHHHHHHTTCCEEEEEESCGG-G-T-----TC----------------------
T ss_pred HHH-cCCcEEEECCc------HHHHHHHHHHHHcCCCeEeeeccCce-e-e-----cccCCeEEE----------eCh--
Confidence 344 89999999999 36788999999999998888886321 1 1 011111000 001
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
-..+++ |+++++..+|||+.|.+|+- ..+++++|.+.+++-
T Consensus 158 ~~a~~~---i~rA~a~~eAGA~~ivlE~v---------p~~~a~~it~~l~iP 198 (275)
T 1o66_A 158 GKAQAL---LNDAKAHDDAGAAVVLMECV---------LAELAKKVTETVSCP 198 (275)
T ss_dssp -CHHHH---HHHHHHHHHTTCSEEEEESC---------CHHHHHHHHHHCSSC
T ss_pred HHHHHH---HHHHHHHHHcCCcEEEEecC---------CHHHHHHHHHhCCCC
Confidence 114677 99999999999999999982 245677777766643
|
| >3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=87.19 E-value=0.83 Score=39.81 Aligned_cols=46 Identities=26% Similarity=0.243 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHcCCccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
.+++.++.++++||++||+.... ..++.+...++.+.+++.|+++.
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 65 (286)
T 3dx5_A 16 SFTDIVQFAYENGFEGIELWGTHAQNLYMQEYETTERELNCLKDKTLEIT 65 (286)
T ss_dssp CHHHHHHHHHHTTCCEEEEEHHHHHHHHHHCHHHHHHHHHHTGGGTCCEE
T ss_pred CHHHHHHHHHHhCCCEEEEcccccccccccCHHHHHHHHHHHHHcCCeEE
Confidence 45556666666666666663210 11233444555555555566544
|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=87.09 E-value=6.6 Score=34.17 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=67.7
Q ss_pred HHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCceecC---C--cHH----HHHHHhCCchHHHHHHHHH
Q 022296 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---G--DWA----EHLIRNGPSAFKEYVEDCK 111 (299)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~---G--tlf----E~a~~qg~~~~~~yl~~~k 111 (299)
.+++.|+.+.+. .|.+=+.... ..+.+++.-++++++|+.++. + +++ +....+.-+.+++.++.|+
T Consensus 39 ~~~~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~ 114 (287)
T 3kws_A 39 SLNEKLDFMEKLGVVGFEPGGGG----LAGRVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAG 114 (287)
T ss_dssp SHHHHHHHHHHTTCCEEECBSTT----CGGGHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----hHHHHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567777776665 7888877653 245689999999999997752 2 121 1111111126889999999
Q ss_pred HcCCCEEEecCCcccC------Ch-------hHHHHHHHHHHHcCCccccee
Q 022296 112 QVGFDTIELNVGSLEI------PE-------ETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 112 ~lGF~~IEISdGti~i------~~-------~~r~~lI~~~~~~G~~v~~E~ 150 (299)
++|.+.|=+..|.... .. +...++.+.+++.|+++.-|-
T Consensus 115 ~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 166 (287)
T 3kws_A 115 ELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIFEP 166 (287)
T ss_dssp HTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred HcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 9999999997664432 22 233445566777787755553
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=87.07 E-value=2.6 Score=39.09 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=97.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 44 ~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv------------------------ 99 (314)
T 3qze_A 44 DSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGT------------------------ 99 (314)
T ss_dssp HHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEEC------------------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC------------------------
Confidence 368889999999999999775433 479999999999998883 0011101122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~----~G~~r 227 (299)
...+..+. |+.++..-++|||.|++=.- -||+. .-++.
T Consensus 100 ----------g~~st~ea---i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~ 166 (314)
T 3qze_A 100 ----------GANSTREA---VALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDML 166 (314)
T ss_dssp ----------CCSSHHHH---HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCC
T ss_pred ----------CCcCHHHH---HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCC
Confidence 11125666 89999999999999998762 15654 34677
Q ss_pred HHHHHHHHhccCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~~ekli--fEA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.++++ .+ +|+ =|+ ++-.+...+++..+++..+.--. |-+.+++|..|--|
T Consensus 167 ~~~~~~La~-~p--nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~-d~~~l~~l~~Ga~G 223 (314)
T 3qze_A 167 PETVERLSK-VP--NIIGIKEATGDLQRAKEVIERVGKDFLVYSGD-DATAVELMLLGGKG 223 (314)
T ss_dssp HHHHHHHHT-ST--TEEEEEECSCCHHHHHHHHHHSCTTSEEEESC-GGGHHHHHHTTCCE
T ss_pred HHHHHHHhc-CC--CEEEEEcCCCCHHHHHHHHHHcCCCeEEEecC-hHHHHHHHHCCCCE
Confidence 888888873 43 332 244 56677778888888887775333 34568888877544
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=87.04 E-value=2.4 Score=39.44 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=46.3
Q ss_pred HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec------CCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 79 AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN------VGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 79 ~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS------dGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
..+||+..+.. .| .-++.++.+|++|+++|-|. .|.-+ .+.-+++++.|+++||+|.-.|+.
T Consensus 15 ~e~~g~~~~~~--------~G--~~~d~~~ilk~~G~N~VRi~~w~~P~~g~~~--~~~~~~~~~~A~~~GlkV~ld~Hy 82 (332)
T 1hjs_A 15 EERAGVSYKNT--------NG--NAQPLENILAANGVNTVRQRVWVNPADGNYN--LDYNIAIAKRAKAAGLGVYIDFHY 82 (332)
T ss_dssp HHHTTCCCBCT--------TS--CBCCHHHHHHHTTCCEEEEEECSSCTTCTTS--HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHcCCEEECC--------CC--CcccHHHHHHHCCCCEEEEeeeeCCCCCcCC--HHHHHHHHHHHHHCCCEEEEEecc
Confidence 56677766652 12 23456888999999999994 44333 466778999999999999998876
Q ss_pred e
Q 022296 153 M 153 (299)
Q Consensus 153 K 153 (299)
.
T Consensus 83 s 83 (332)
T 1hjs_A 83 S 83 (332)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=87.01 E-value=1 Score=38.82 Aligned_cols=47 Identities=13% Similarity=0.214 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+++.++.++++||+.||+...... ++..+..++.+.+++.|+++..
T Consensus 17 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 65 (281)
T 3u0h_A 17 SLVLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLAN 65 (281)
T ss_dssp CHHHHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEECC
T ss_pred CHHHHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceEE
Confidence 6889999999999999999865431 2345567788888999998754
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=1.8 Score=40.46 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=84.1
Q ss_pred HHHhhcccccEEEeeCcccccCChhHHHHHHHHHHh----CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 46 IFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ----HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 46 lLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~----~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
.|..+| ||.+=.||+.+.-.+.+.+++..+.... -++.+. ++..+ . + .++.+.+.|.+.|-|.
T Consensus 50 ~L~~~G--v~~IE~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~-------~l~~~--~-~-~i~~a~~~g~~~v~i~ 116 (337)
T 3ble_A 50 LLQKLN--VDRVEIASARVSKGELETVQKIMEWAATEQLTERIEIL-------GFVDG--N-K-TVDWIKDSGAKVLNLL 116 (337)
T ss_dssp HHHTTC--CSEEEEEETTSCTTHHHHHHHHHHHHHHTTCGGGEEEE-------EESST--T-H-HHHHHHHHTCCEEEEE
T ss_pred HHHHcC--CCEEEEeCCCCChhHHHHHHHHHhhhhhhccCCCCeEE-------EEccc--h-h-hHHHHHHCCCCEEEEE
Confidence 444445 7888888876533333556655553221 122221 22222 1 1 5788888999999986
Q ss_pred CCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 122 VGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 122 dGti~i------------~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
..+-++ ..+.-.+.|+.+++.|++|. +...+ .+ +. . ..
T Consensus 117 ~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~~~----~~---~~------------~---------~~ 166 (337)
T 3ble_A 117 TKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKIN--VYLED----WS---NG------------F---------RN 166 (337)
T ss_dssp EECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEE--EEEET----HH---HH------------H---------HH
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE--EEEEE----CC---CC------------C---------cC
Confidence 543222 12455678899999998753 44421 00 00 0 02
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHh
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~ 236 (299)
+++.+ ++.+++..++||+.|. |+|..|-..+..+.++++
T Consensus 167 ~~~~~---~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~ 205 (337)
T 3ble_A 167 SPDYV---KSLVEHLSKEHIERIF-----LPDTLGVLSPEETFQGVD 205 (337)
T ss_dssp CHHHH---HHHHHHHHTSCCSEEE-----EECTTCCCCHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHcCCCEEE-----EecCCCCcCHHHHHHHHH
Confidence 26777 8889999999998774 577777777776666664
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=86.92 E-value=1.3 Score=40.82 Aligned_cols=96 Identities=15% Similarity=0.243 Sum_probs=64.8
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
..+ -|.++|-|-|| ++....|+.+.++|..|.-.+|..-. ....++.|..-. . .+
T Consensus 103 l~k-aGa~aVklEgg------~e~~~~I~al~~agipV~gHiGLtPq-------~v~~~ggf~v~g-r----------t~ 157 (264)
T 1m3u_A 103 VMR-AGANMVKIEGG------EWLVETVQMLTERAVPVCGHLGLTPQ-------SVNIFGGYKVQG-R----------GD 157 (264)
T ss_dssp HHH-TTCSEEECCCS------GGGHHHHHHHHHTTCCEEEEEESCGG-------GHHHHTSSCCCC-C----------SH
T ss_pred HHH-cCCCEEEECCc------HHHHHHHHHHHHCCCCeEeeecCCce-------eecccCCeEEEe-C----------CH
Confidence 344 89999999999 46788999999999888888887311 111111111100 0 11
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
-..+++ |+++++..+|||+.|.+|+- ..++.++|.+.+++-
T Consensus 158 ~~a~~~---i~rA~a~~eAGA~~ivlE~v---------p~~~a~~it~~l~iP 198 (264)
T 1m3u_A 158 EAGDQL---LSDALALEAAGAQLLVLECV---------PVELAKRITEALAIP 198 (264)
T ss_dssp HHHHHH---HHHHHHHHHHTCCEEEEESC---------CHHHHHHHHHHCSSC
T ss_pred HHHHHH---HHHHHHHHHCCCcEEEEecC---------CHHHHHHHHHhCCCC
Confidence 124677 99999999999999999982 245667777766643
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=86.88 E-value=2.5 Score=38.50 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ +|+ |.
T Consensus 20 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~gvi--~Gv-------g~----------------- 73 (286)
T 2r91_A 20 LFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARRVI--VQV-------AS----------------- 73 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSSEE--EEC-------CC-----------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCEE--Eee-------CC-----------------
Confidence 67888999999999999886543 47999999999999988410011 222 11
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
.+..+. |+.++..-++|||.|++=.-
T Consensus 74 ----------~~t~~a---i~la~~A~~~Gadavlv~~P 99 (286)
T 2r91_A 74 ----------LNADEA---IALAKYAESRGAEAVASLPP 99 (286)
T ss_dssp ----------SSHHHH---HHHHHHHHHTTCSEEEECCS
T ss_pred ----------CCHHHH---HHHHHHHHhcCCCEEEEcCC
Confidence 114556 88889999999999998553
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=86.84 E-value=3.3 Score=37.93 Aligned_cols=143 Identities=13% Similarity=0.054 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.++++++++-+-|.+.|=+.-.|- .|+.++|.++++.+.+. +=++.-=+|+
T Consensus 29 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv------------------------- 83 (297)
T 3flu_A 29 QLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGT------------------------- 83 (297)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeC-------------------------
Confidence 678889999999999998755443 78999999999999883 0011111122
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCcccH
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRA 228 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~----~G~~r~ 228 (299)
...+..+. |+.++..-++|||.|++=.- -+|+. .-++..
T Consensus 84 ---------g~~~t~~a---i~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~ 151 (297)
T 3flu_A 84 ---------GANNTVEA---IALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTN 151 (297)
T ss_dssp ---------CCSSHHHH---HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCH
T ss_pred ---------CCcCHHHH---HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCH
Confidence 11125566 89999999999999998762 15653 236677
Q ss_pred HHHHHHHhccCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 229 DIIAKVIGRLGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 229 d~i~~ii~~l~~ekli--fEA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
+.+.++. +.+ +|+ =|+ .+-.+...++++.+++..+.-- +|-+.+++|..|--|
T Consensus 152 ~~~~~La-~~p--nivgiKdssgd~~~~~~~~~~~~~~f~v~~G-~d~~~l~~l~~G~~G 207 (297)
T 3flu_A 152 DTILRLA-EIP--NIVGVKEASGNIGSNIELINRAPEGFVVLSG-DDHTALPFMLCGGHG 207 (297)
T ss_dssp HHHHHHT-TST--TEEEEEECSCCHHHHHHHHHHSCTTCEEEEC-CGGGHHHHHHTTCCE
T ss_pred HHHHHHH-cCC--CEEEEEeCCCCHHHHHHHHHhcCCCeEEEEC-cHHHHHHHHhCCCCE
Confidence 8888776 343 332 244 5666777888888888777533 344567888866444
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=86.64 E-value=11 Score=34.41 Aligned_cols=170 Identities=18% Similarity=0.168 Sum_probs=100.3
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhccccc---EEEeeCcccccCC----hhHHHHHHHHHHhCCceecC--C-cH
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVD---GLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVST--G-DW 91 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID---~lKfg~GTs~l~p----~~~l~eKI~l~~~~gV~v~~--G-tl 91 (299)
+..|++-++-+|. .+...+..++.+..|=+ .+..+.|-+.-.. ++.+.+..+++++..|.--. | .+
T Consensus 27 ~~~gV~~~v~~g~----~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~vvaIGEiGLD~ 102 (287)
T 3rcm_A 27 LEAGVTQMLLTGT----SLAVSEQALELCQQLDASGAHLFATAGVHPHDAKAWDTDSERQLRLLLSEPRVRAVGECGLDF 102 (287)
T ss_dssp HHTTEEEEEECCC----SHHHHHHHHHHHHHHCTTSSSEEEEECCCGGGGGGCCTTHHHHHHHHHTSTTEEEEEEEEEET
T ss_pred HHcCCeEEEEecC----CHHHHHHHHHHHHhCCCCCceEEEEEEECcCccccCCHHHHHHHHHHhcCCCeEEEEEeeeCC
Confidence 4679999999998 56688888888888865 4777777665432 34466655666554432211 2 22
Q ss_pred H----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 022296 92 A----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (299)
Q Consensus 92 f----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~ 167 (299)
. ....++. .|.+-++.|+++|...+==+-. ..+ ++++.+++.+.. +.-++-...+ |
T Consensus 103 ~~~~~~~~~Q~~--~F~~ql~lA~e~~lPv~iH~r~----a~~---~~l~il~~~~~~--~~~~V~H~fs--G------- 162 (287)
T 3rcm_A 103 NRDFSPRPLQEK--ALEAQLTLAAQLRLPVFLHERD----ASE---RLLAILKDYRDH--LTGAVVHCFT--G------- 162 (287)
T ss_dssp TTCSSCHHHHHH--HHHHHHHHHHHHTCCEEEEEES----CHH---HHHHHHHTTGGG--CSCEEECSCC--C-------
T ss_pred CcccCcHHHHHH--HHHHHHHHHHHhCCCEEEEcCC----cHH---HHHHHHHHcCCC--CCeEEEEeCC--C-------
Confidence 1 1123333 6899999999999887632322 223 455555553321 1112321111 0
Q ss_pred cccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccc-cccCCCcccHHHHHHHHhccCCCceEEe
Q 022296 168 GAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDD-VCKHADSLRADIIAKVIGRLGLEKTMFE 246 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEarg-i~d~~G~~r~d~i~~ii~~l~~eklifE 246 (299)
+ .+.+++.++.|.+.=+- | ++.. -|...+.++++.+|++||++|
T Consensus 163 --------------------~---------~e~a~~~l~~G~yis~~---g~i~~~---k~~~~l~~~v~~ip~drlLlE 207 (287)
T 3rcm_A 163 --------------------E---------REALFAYLDLDLHIGIT---GWICDE---RRGTHLHPLVGNIPEGRLMLE 207 (287)
T ss_dssp --------------------C---------HHHHHHHHHTTCEEEEC---GGGGCT---TTCGGGHHHHTTSCTTSEEEC
T ss_pred --------------------C---------HHHHHHHHHCCcEEEEC---chhccc---cCHHHHHHHHHhcCCccEEEe
Confidence 1 44458889999654332 4 2221 122346788899999999999
Q ss_pred cCCc
Q 022296 247 ATNP 250 (299)
Q Consensus 247 AP~k 250 (299)
...|
T Consensus 208 TD~P 211 (287)
T 3rcm_A 208 SDAP 211 (287)
T ss_dssp CCTT
T ss_pred ccCC
Confidence 8755
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=86.57 E-value=1.4 Score=40.37 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=92.6
Q ss_pred hHHHHHHHHHH-cCCCEEEecCCc---ccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 102 AFKEYVEDCKQ-VGFDTIELNVGS---LEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 102 ~~~~yl~~~k~-lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
.+.++++++-+ -|.+.|=+.-.| ..|+.++|.++++.+.+. | ++.-=.|+
T Consensus 25 ~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGv----------------------- 80 (293)
T 1f6k_A 25 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD-QIALIAQV----------------------- 80 (293)
T ss_dssp HHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEC-----------------------
T ss_pred HHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-CCeEEEec-----------------------
Confidence 57888999999 999999886543 479999999999999873 1 11111122
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-cc
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SL 226 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~---~G-~~ 226 (299)
...+..+. |+.++..-++|||.|++=.- -||+. .| ++
T Consensus 81 -----------g~~~t~~a---i~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l 146 (293)
T 1f6k_A 81 -----------GSVNLKEA---VELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNM 146 (293)
T ss_dssp -----------CCSCHHHH---HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCC
T ss_pred -----------CCCCHHHH---HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCC
Confidence 11124566 88899999999999998652 15663 23 57
Q ss_pred cHHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 227 RADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 227 r~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
..+.+.++++ ..+|+- |+ .+-.+...+++. +++..+.--.++ +.+++|..|--|
T Consensus 147 ~~~~~~~La~---~pnIvgiK~s~gd~~~~~~~~~~-~~~f~v~~G~d~-~~~~~l~~G~~G 203 (293)
T 1f6k_A 147 GIEQFGELYK---NPKVLGVKFTAGDFYLLERLKKA-YPNHLIWAGFDE-MMLPAASLGVDG 203 (293)
T ss_dssp CHHHHHHHHT---STTEEEEEECSCCHHHHHHHHHH-CTTSEEEECCGG-GHHHHHHTTCSE
T ss_pred CHHHHHHHhc---CCCEEEEEECCCCHHHHHHHHHh-CCCeEEEECcHH-HHHHHHHCCCcE
Confidence 7888888863 344432 44 455566666665 566555433333 578888766443
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=86.45 E-value=2.5 Score=38.94 Aligned_cols=98 Identities=12% Similarity=0.088 Sum_probs=63.9
Q ss_pred CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCC
Q 022296 82 HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKS 157 (299)
Q Consensus 82 ~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~s 157 (299)
.||.+..=|.|-.=-.=+.+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 17 ~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGv----- 91 (304)
T 3l21_A 17 GTLLTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGA----- 91 (304)
T ss_dssp CSEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC-----
T ss_pred CceEEEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeC-----
Confidence 4665554443311001112368889999999999999776443 479999999999999883 1011111122
Q ss_pred CCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 158 DIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 158 evg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
...+..+. |+.++..-++|||.|++=.
T Consensus 92 -----------------------------g~~~t~~a---i~la~~a~~~Gadavlv~~ 118 (304)
T 3l21_A 92 -----------------------------GTYDTAHS---IRLAKACAAEGAHGLLVVT 118 (304)
T ss_dssp -----------------------------CCSCHHHH---HHHHHHHHHHTCSEEEEEC
T ss_pred -----------------------------CCCCHHHH---HHHHHHHHHcCCCEEEECC
Confidence 11125566 8999999999999999976
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=86.40 E-value=1.6 Score=39.93 Aligned_cols=144 Identities=13% Similarity=0.051 Sum_probs=89.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.- =++.-=+|+
T Consensus 23 ~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGv------------------------ 78 (292)
T 3daq_A 23 EALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGT------------------------ 78 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC------------------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeC------------------------
Confidence 478889999999999999665433 4789999999999998831 011001122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~----~G~~r 227 (299)
...+..+. |+.++..-++|||.|++=.- -||+. .-++.
T Consensus 79 ----------g~~~t~~a---i~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~ 145 (292)
T 3daq_A 79 ----------GTNDTEKS---IQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIE 145 (292)
T ss_dssp ----------CCSCHHHH---HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCC
T ss_pred ----------CcccHHHH---HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCC
Confidence 11125566 88899999999999998762 14552 23566
Q ss_pred HHHHHHHHhccCCCceE--EecC-CchhHHHHHHHhCC-CcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLGLEKTM--FEAT-NPRTSEWFIRRYGP-KVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~~ekli--fEAP-~k~qQ~~fI~~fG~-~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.++.+ . .+|+ =|+. +-.+...+++..++ +..+.--. |-+-+++|..|--|
T Consensus 146 ~~~~~~La~-~--pnivgiK~ssgd~~~~~~~~~~~~~~~f~v~~G~-d~~~~~~l~~G~~G 203 (292)
T 3daq_A 146 PETVEILSQ-H--PYIVALKDATNDFEYLEEVKKRIDTNSFALYSGN-DDNVVEYYQRGGQG 203 (292)
T ss_dssp HHHHHHHHT-S--TTEEEEEECCCCHHHHHHHHTTSCTTTSEEEESC-GGGHHHHHHTTCCE
T ss_pred HHHHHHHhc-C--CCEEEEEeCCCCHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHhcCCCE
Confidence 777777764 3 3332 2343 44555566666665 55554333 34456777755433
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.38 E-value=1.6 Score=39.85 Aligned_cols=143 Identities=15% Similarity=0.136 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+ |
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGv-------g---------------- 77 (294)
T 2ehh_A 22 ALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAG-RIKVIAGT-------G---------------- 77 (294)
T ss_dssp HHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEC-------C----------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEec-------C----------------
Confidence 6788899999999999988654 3489999999999999873 2 11111222 1
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-ccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~---~G-~~r 227 (299)
..+..+. |+.++..-++|||.|++=.- -||+. .| ++.
T Consensus 78 -----------~~~t~~a---i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~ 143 (294)
T 2ehh_A 78 -----------GNATHEA---VHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEIS 143 (294)
T ss_dssp -----------CSCHHHH---HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCC
T ss_pred -----------CCCHHHH---HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCC
Confidence 1124566 89999999999999998652 15663 23 678
Q ss_pred HHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.+++++. .+|+- |+ .+-.+...+++..++++.+. .-+|-+.+++|..|--|
T Consensus 144 ~~~~~~La~~~--pnivgiKds~gd~~~~~~~~~~~~~~f~v~-~G~d~~~~~~l~~G~~G 201 (294)
T 2ehh_A 144 VDTMFKLASEC--ENIVASKESTPNMDRISEIVKRLGESFSVL-SGDDSLTLPMMALGAKG 201 (294)
T ss_dssp HHHHHHHHHHC--TTEEEEEECCSCHHHHHHHHHHHCTTSEEE-ESSGGGHHHHHHTTCCE
T ss_pred HHHHHHHHhhC--CCEEEEEeCCCCHHHHHHHHHhcCCCeEEE-ECcHHHHHHHHHCCCCE
Confidence 88888887344 44542 55 46667778888888776664 33455678888876444
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=86.34 E-value=3.6 Score=37.77 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+
T Consensus 34 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-rvpViaGv------------------------ 88 (301)
T 1xky_A 34 KTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDK-RVPVIAGT------------------------ 88 (301)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEEC------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CceEEeCC------------------------
Confidence 6888999999999999988654 3489999999999999873 1 11111122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-ccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~---~G-~~r 227 (299)
...+..+. |+.++..-++|||.|++=.- -||+. .| ++.
T Consensus 89 ----------g~~~t~~a---i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~ 155 (301)
T 1xky_A 89 ----------GSNNTHAS---IDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQIS 155 (301)
T ss_dssp ----------CCSCHHHH---HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCC
T ss_pred ----------CCCCHHHH---HHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCC
Confidence 11125566 88999999999999998652 15653 23 567
Q ss_pred HHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.++++ ..+|+- |+ .+-.+...+++..+++..+. .-+|-+.+++|..|--|
T Consensus 156 ~~~~~~La~---~pnIvgiKdssgd~~~~~~~~~~~~~~f~v~-~G~d~~~l~~l~~G~~G 212 (301)
T 1xky_A 156 VDTVVRLSE---IENIVAIKDAGGDVLTMTEIIEKTADDFAVY-SGDDGLTLPAMAVGAKG 212 (301)
T ss_dssp HHHHHHHHT---STTEEEEEECSSCHHHHHHHHHHSCTTCEEE-ESSGGGHHHHHHTTCCE
T ss_pred HHHHHHHHc---CCCEEEEEcCCCCHHHHHHHHHhcCCCeEEE-ECcHHHHHHHHHcCCCE
Confidence 788888863 345543 44 45666777788887776654 33445678888866443
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=86.10 E-value=1.6 Score=40.26 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+
T Consensus 33 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-rvpViaGv------------------------ 87 (303)
T 2wkj_A 33 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKG-KIKLIAHV------------------------ 87 (303)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-TSEEEEEC------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEec------------------------
Confidence 6888999999999999988654 3489999999999999883 1 11111122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc---------------------c-----cccC---CC-cc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD---------------------D-----VCKH---AD-SL 226 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar---------------------g-----i~d~---~G-~~ 226 (299)
...+..+. |+.++..-++|||.|++=.- + ||+. .| ++
T Consensus 88 ----------g~~~t~~a---i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l 154 (303)
T 2wkj_A 88 ----------GCVSTAES---QQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154 (303)
T ss_dssp ----------CCSSHHHH---HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCC
T ss_pred ----------CCCCHHHH---HHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCC
Confidence 11124556 88899999999999998653 1 3442 23 45
Q ss_pred cHHHHHHHHhccCCCceEE--ecC-CchhHHHHHHHhCCCcccccCCCCchhhhhhhcc
Q 022296 227 RADIIAKVIGRLGLEKTMF--EAT-NPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGR 282 (299)
Q Consensus 227 r~d~i~~ii~~l~~eklif--EAP-~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~ 282 (299)
..+.+.++++ ..+|+- |+. +-.+...+++. ++++.+.--. |-+.+++|..|
T Consensus 155 ~~~~~~~La~---~pnIvgiK~s~gd~~~~~~~~~~-~~~f~v~~G~-d~~~~~~l~~G 208 (303)
T 2wkj_A 155 TLDQINTLVT---LPGVGALXQTSGDLYQMEQIRRE-HPDLVLYNGY-DNIFASGLLAG 208 (303)
T ss_dssp CHHHHHHHHT---STTEEEEEECCCCHHHHHHHHHH-CTTCEEEECC-GGGHHHHHHHT
T ss_pred CHHHHHHHhc---CCCEEEEeCCCCCHHHHHHHHHh-CCCeEEEeCc-HHHHHHHHHCC
Confidence 6666666653 234432 333 33444455554 5544443323 33456666654
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=86.03 E-value=2.4 Score=39.27 Aligned_cols=148 Identities=12% Similarity=0.146 Sum_probs=85.8
Q ss_pred HHHHHHhhcccccEEEeeCccccc-CCh-hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022296 43 LEDIFESMGQFVDGLKFSGGSHSL-MPK-PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (299)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs~l-~p~-~~l~eKI~l~~~-~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (299)
+-+.|..+| ||.+=.||+.+.- .|. ..-.+.++.+++ -++.+. .| .++ .+=++.+.+.|.+.|-
T Consensus 33 i~~~L~~~G--v~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~--~l-----~~~----~~~i~~a~~~g~~~v~ 99 (307)
T 1ydo_A 33 WINQLSRTG--LSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYA--AL-----VPN----QRGLENALEGGINEAC 99 (307)
T ss_dssp HHHHHHTTT--CSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTCEEE--EE-----CCS----HHHHHHHHHHTCSEEE
T ss_pred HHHHHHHcC--CCEEEECCCcCcccccccCCHHHHHHHhhhcCCCeEE--EE-----eCC----HHhHHHHHhCCcCEEE
Confidence 344566666 7888888865431 110 012233333322 133322 12 233 2236777788999999
Q ss_pred ecCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCC
Q 022296 120 LNVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNP 187 (299)
Q Consensus 120 ISdGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
|...+-++ +. +.-.+.|+.+++.|++|-..+..- ++...+ .
T Consensus 100 i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~-----~~~~~~-------------~--------- 152 (307)
T 1ydo_A 100 VFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTV-----FGCPYE-------------K--------- 152 (307)
T ss_dssp EEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECT-----TCBTTT-------------B---------
T ss_pred EEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-----ecCCcC-------------C---------
Confidence 97644332 22 334678999999999864322221 111111 0
Q ss_pred ccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 188 EIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 188 ~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.+++..++||+.|. |+|..|-..+..+.++++.+
T Consensus 153 ~~~~~~~---~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 195 (307)
T 1ydo_A 153 DVPIEQV---IRLSEALFEFGISELS-----LGDTIGAANPAQVETVLEAL 195 (307)
T ss_dssp CCCHHHH---HHHHHHHHHHTCSCEE-----EECSSCCCCHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHhcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 1237788 8889999999999664 56788888887777776543
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=86.03 E-value=1.5 Score=40.44 Aligned_cols=141 Identities=9% Similarity=0.040 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 36 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv------------------------- 90 (307)
T 3s5o_A 36 KLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGS------------------------- 90 (307)
T ss_dssp HHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEec-------------------------
Confidence 67888999999999999776544 369999999999999884 0010000122
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc----------c-----------------cccC---CC-cc
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD----------D-----------------VCKH---AD-SL 226 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar----------g-----------------i~d~---~G-~~ 226 (299)
...+..+. |+.++..-++|||.|++=.- | ||+. .| ++
T Consensus 91 ---------g~~~t~~a---i~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l 158 (307)
T 3s5o_A 91 ---------GCESTQAT---VEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDL 158 (307)
T ss_dssp ---------CCSSHHHH---HHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCC
T ss_pred ---------CCCCHHHH---HHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCC
Confidence 11125566 88899999999999998431 1 4543 12 45
Q ss_pred cHHHHHHHHhccCCCceE--Eec-CCchhHHHHHHHh-CCCcccccCCCCchhhhhhhccc
Q 022296 227 RADIIAKVIGRLGLEKTM--FEA-TNPRTSEWFIRRY-GPKVNLFVDHSQVMDLECLRGRN 283 (299)
Q Consensus 227 r~d~i~~ii~~l~~ekli--fEA-P~k~qQ~~fI~~f-G~~VNLgI~~~eVi~LE~LR~~~ 283 (299)
..+.+.++++ .+ +|+ =|+ .+-.+...++++. +++..+.--. |-+-+++|..|-
T Consensus 159 ~~~~~~~La~-~p--nIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~-d~~~l~~l~~G~ 215 (307)
T 3s5o_A 159 PVDAVVTLSQ-HP--NIVGMXDSGGDVTRIGLIVHKTRKQDFQVLAGS-AGFLMASYALGA 215 (307)
T ss_dssp CHHHHHHHHT-ST--TEEEEEECSCCHHHHHHHHHHTTTSSCEEEESS-GGGHHHHHHHTC
T ss_pred CHHHHHHHhc-CC--CEEEEEcCCCCHHHHHHHHHhccCCCeEEEeCc-HHHHHHHHHcCC
Confidence 6667776663 33 232 233 3445555666655 4566554333 234567776553
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=85.95 E-value=3.5 Score=37.35 Aligned_cols=62 Identities=3% Similarity=-0.059 Sum_probs=40.8
Q ss_pred EEEeeCcccc-------cCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcC-CCEEEecCC
Q 022296 56 GLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVG-FDTIELNVG 123 (299)
Q Consensus 56 ~lKfg~GTs~-------l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lG-F~~IEISdG 123 (299)
++=+.++|-. -.+.+.+.+.++-.++. ++++.- .+| ..+.+.++.+.+.+.| .|.|-+++.
T Consensus 125 ~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~-------~~~~~~~~a~~~~~aG~~d~i~v~~~ 197 (314)
T 2e6f_A 125 LLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYF-------DIAHFDTAAAVLNEFPLVKFVTCVNS 197 (314)
T ss_dssp EEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCCC-------CHHHHHHHHHHHHTCTTEEEEEECCC
T ss_pred eEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCC-------CHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 6666665332 22556677788777765 654432 122 1125777888999999 999999997
Q ss_pred c
Q 022296 124 S 124 (299)
Q Consensus 124 t 124 (299)
+
T Consensus 198 ~ 198 (314)
T 2e6f_A 198 V 198 (314)
T ss_dssp E
T ss_pred C
Confidence 7
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=85.87 E-value=1.8 Score=39.81 Aligned_cols=142 Identities=16% Similarity=0.117 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+
T Consensus 22 ~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGv------------------------ 76 (297)
T 2rfg_A 22 ALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQG-RVPVIAGA------------------------ 76 (297)
T ss_dssp HHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCBEEEC------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC-CCeEEEcc------------------------
Confidence 6788899999999999987543 3489999999999999873 1 11111222
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~----~G~~r 227 (299)
...+..+. |+.++..-++|||.|++=.- -||+. .-++.
T Consensus 77 ----------g~~~t~~a---i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~ 143 (297)
T 2rfg_A 77 ----------GSNNPVEA---VRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIK 143 (297)
T ss_dssp ----------CCSSHHHH---HHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCC
T ss_pred ----------CCCCHHHH---HHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCC
Confidence 11124566 88899999999999998652 15653 22567
Q ss_pred HHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.++++ . .+|+- |+ ++-.+...+++..++++.+. .-+|-+.+++|..|--|
T Consensus 144 ~~~~~~La~-~--pnIvgiKds~gd~~~~~~~~~~~~~~f~v~-~G~d~~~l~~l~~G~~G 200 (297)
T 2rfg_A 144 PETMARLAA-L--PRIVGVKDATTDLARISRERMLINKPFSFL-SGDDMTAIAYNASGGQG 200 (297)
T ss_dssp HHHHHHHHT-S--TTEEEEEECSCCTTHHHHHHTTCCSCCEEE-ESCGGGHHHHHHTTCCE
T ss_pred HHHHHHHHc-C--CCEEEEEeCCCCHHHHHHHHHhcCCCEEEE-eCcHHHHHHHHHCCCCE
Confidence 788888864 3 45542 55 45666677777777665553 23345577788766433
|
| >2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=85.85 E-value=0.95 Score=40.39 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCC--cccC-----ChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG--SLEI-----PEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG--ti~i-----~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+++.++.++++||+.||+... .++. +.+...++.+.+++.|+++..
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 69 (340)
T 2zds_A 16 PLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWA 69 (340)
T ss_dssp CHHHHHHHHHHHTCSEEEEESSTTTCCHHHHHHCTTHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCCEEEeccccccCCccccccCHHHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999863 3332 345567888999999999754
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=85.72 E-value=19 Score=32.11 Aligned_cols=102 Identities=16% Similarity=0.257 Sum_probs=63.5
Q ss_pred hhHHHHHHHhhccc-ccEEEeeCccc-ccCChhHHH-----------------HHHHHHHhC--CceecCCcHHHHHHHh
Q 022296 40 HNVLEDIFESMGQF-VDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAHQH--DVYVSTGDWAEHLIRN 98 (299)
Q Consensus 40 ~~~l~DlLe~ag~y-ID~lKfg~GTs-~l~p~~~l~-----------------eKI~l~~~~--gV~v~~GtlfE~a~~q 98 (299)
+..+.++++..-+. +|.+-+|.=-+ .+++-..+. +-++-.+++ ++++-.=+...-++..
T Consensus 30 ~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~ 109 (268)
T 1qop_A 30 IEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNN 109 (268)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHh
Confidence 34555655555444 99999986221 122333333 445555655 3333210223334444
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
..++|++.|.+.|.|.|=+. +++.++..++++.++++|+++.+
T Consensus 110 ---g~~~~~~~~~~aGadgii~~----d~~~e~~~~~~~~~~~~g~~~i~ 152 (268)
T 1qop_A 110 ---GIDAFYARCEQVGVDSVLVA----DVPVEESAPFRQAALRHNIAPIF 152 (268)
T ss_dssp ---CHHHHHHHHHHHTCCEEEET----TCCGGGCHHHHHHHHHTTCEEEC
T ss_pred ---hHHHHHHHHHHcCCCEEEEc----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 47999999999999988886 44557778899999999887533
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=85.69 E-value=2.2 Score=40.07 Aligned_cols=105 Identities=19% Similarity=0.314 Sum_probs=63.2
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCc-------------ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccc
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNVGS-------------LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDR 165 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGt-------------i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~ 165 (299)
|+.+.+..+.+++.|||.|||+-|+ +.-..+.-.++|+.+++. ++ | +++|... |. ++
T Consensus 69 p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~---P-V~vKiR~---g~-~~- 139 (350)
T 3b0p_A 69 PKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRV---P-VTVKMRL---GL-EG- 139 (350)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSS---C-EEEEEES---CB-TT-
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCC---c-eEEEEec---Cc-Cc-
Confidence 3467777778888999999999652 333445556677777763 32 2 5565321 11 11
Q ss_pred cccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccc----cccC----CCcccHHHHHHHHhc
Q 022296 166 AFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDD----VCKH----ADSLRADIIAKVIGR 237 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEarg----i~d~----~G~~r~d~i~~ii~~ 237 (299)
..+.+.. ++.++...++|++.|+|-+|. +.-. ......+.+.++.+.
T Consensus 140 ----------------------~~~~~~~---~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~ 194 (350)
T 3b0p_A 140 ----------------------KETYRGL---AQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGD 194 (350)
T ss_dssp ----------------------CCCHHHH---HHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHH
T ss_pred ----------------------cccHHHH---HHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHh
Confidence 0013345 677788889999999999872 2111 012356677777665
Q ss_pred c
Q 022296 238 L 238 (299)
Q Consensus 238 l 238 (299)
+
T Consensus 195 ~ 195 (350)
T 3b0p_A 195 F 195 (350)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=85.66 E-value=2.1 Score=39.12 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.++++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pvi~Gv------------------------ 77 (291)
T 3a5f_A 23 KLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNK-RIPVIAGT------------------------ 77 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEEC------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEeC------------------------
Confidence 6788899999999999988654 3489999999999999873 2 11111222
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--------c-----------------cccC----CCccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--------D-----------------VCKH----ADSLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--------g-----------------i~d~----~G~~r 227 (299)
...+..+. |+.++..-++|||.|++=.- | ||+. .-++.
T Consensus 78 ----------g~~~t~~a---i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~ 144 (291)
T 3a5f_A 78 ----------GSNNTAAS---IAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNIT 144 (291)
T ss_dssp ----------CCSSHHHH---HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCC
T ss_pred ----------CcccHHHH---HHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCC
Confidence 11124566 89999999999999998652 1 4553 23577
Q ss_pred HHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.++++ ..+|+- |+ .+-.+...+++..++++.+. .-+|-+.+++|..|--|
T Consensus 145 ~~~~~~La~---~pnivgiK~s~gd~~~~~~~~~~~~~~f~v~-~G~d~~~~~~l~~G~~G 201 (291)
T 3a5f_A 145 PGTLKELCE---DKNIVAVXEASGNISQIAQIKALCGDKLDIY-SGNDDQIIPILALGGIG 201 (291)
T ss_dssp HHHHHHHTT---STTEEEEEECSCCHHHHHHHHHHHGGGSEEE-ESCGGGHHHHHHTTCCE
T ss_pred HHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHhcCCCeEEE-eCcHHHHHHHHHCCCCE
Confidence 888888863 345542 55 46667778888888766654 33455678888877444
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=85.66 E-value=8.3 Score=37.76 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL 125 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti 125 (299)
.+.+..+.|.+.|.|.|-+++++.
T Consensus 312 d~~~iA~~~~~aGaDgI~v~ntt~ 335 (443)
T 1tv5_A 312 QKKEIADVLLETNIDGMIISNTTT 335 (443)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBS
T ss_pred HHHHHHHHHHHcCCCEEEEECCCc
Confidence 567788899999999999999987
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=85.51 E-value=18 Score=33.73 Aligned_cols=169 Identities=14% Similarity=0.182 Sum_probs=104.4
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhccccc----EEEeeCcccccCCh----h-HHHHHHHHHHhC--CceecC--
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVD----GLKFSGGSHSLMPK----P-FIEEVVKRAHQH--DVYVST-- 88 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID----~lKfg~GTs~l~p~----~-~l~eKI~l~~~~--gV~v~~-- 88 (299)
+..|++-++-+|. .+...+..++.+..|=| .+..+.|-+...-. + .+.+..+++.++ .|.--.
T Consensus 62 ~~aGV~~ii~~g~----~~~~~~~~~~La~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~l~~L~~l~~~~~~~vvAIGEi 137 (325)
T 3ipw_A 62 ERNGLSHIIITSG----CLNDFKKAIEIINKYQNLTNIKLVTTIGVHPTRTNELKQEGYLDELLLLCEKNIDKVVAIGEI 137 (325)
T ss_dssp HHTTEEEEEECCC----SHHHHHHHHHHHHHHGGGCSSEEEEEECCCGGGGGGGGSTTHHHHHHHHHHHTGGGEEEEEEE
T ss_pred HHcCCcEEEEccC----CHHHHHHHHHHHHHCCCcccceEEEEEEECcchhhcCCchHHHHHHHHHHhcCCCCEEEEEee
Confidence 4679999999999 56689999999988865 77788886654322 1 567777777664 221111
Q ss_pred C-cHH-----HHHHHhCCchHHHHHHHHHH-cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCC
Q 022296 89 G-DWA-----EHLIRNGPSAFKEYVEDCKQ-VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161 (299)
Q Consensus 89 G-tlf-----E~a~~qg~~~~~~yl~~~k~-lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~ 161 (299)
| .+. -...++. .|.+.++.|++ ++...|==+-.. .+ ++++.+++.+.... -|+-...+ |
T Consensus 138 GLD~~~~~~~~~~~Q~~--~F~~ql~lA~e~~~lPviiH~r~A----~~---d~l~iL~~~~~~~~--~gViH~Fs--G- 203 (325)
T 3ipw_A 138 GLDYERLQFSDKETQLS--GYRTLSILHQKYPYLPFFFHCRKS----WS---DLCQLNKELGYNGC--KGVVHCFD--G- 203 (325)
T ss_dssp EEETTCCSSSCHHHHHH--HHHHTHHHHHHCTTCCEEEEEESC----HH---HHHHHHHHTTCTTS--CEEECSCC--C-
T ss_pred ecCCCcCCCCCHHHHHH--HHHHHHHHHHHhhCCeEEEEeCch----HH---HHHHHHHhcCCCCC--cEEEEECC--C-
Confidence 2 221 1123444 79999999999 999877444322 23 45566666543311 13422221 1
Q ss_pred cccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 162 DRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
+ .+++++.|+.|. ++=+=+- ++. +.+.+ +++..+|++
T Consensus 204 --------------------------s---------~e~a~~~l~lG~-yis~~G~-~~k-----~~~~~-~~v~~iPld 240 (325)
T 3ipw_A 204 --------------------------T---------EEEMNQILNEGW-DIGVTGN-SLQ-----SIELL-NVMKQIPIE 240 (325)
T ss_dssp --------------------------C---------HHHHHHHHHTTC-EEEECSG-GGS-----SHHHH-HHHTTSCGG
T ss_pred --------------------------C---------HHHHHHHHhcCc-EEeeCcc-ccC-----cHHHH-HHHHhCCcc
Confidence 1 455688999994 4434332 332 13334 588999999
Q ss_pred ceEEecCCch
Q 022296 242 KTMFEATNPR 251 (299)
Q Consensus 242 klifEAP~k~ 251 (299)
+|+.|..-|-
T Consensus 241 rlLlETDaP~ 250 (325)
T 3ipw_A 241 RLHIETDCPY 250 (325)
T ss_dssp GEEECCCTTS
T ss_pred cEEEeCCCcc
Confidence 9999987653
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=85.44 E-value=3.3 Score=38.16 Aligned_cols=144 Identities=11% Similarity=0.087 Sum_probs=96.4
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+
T Consensus 33 ~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-rvpViaGv----------------------- 88 (306)
T 1o5k_A 33 ESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDG-KIPVIVGA----------------------- 88 (306)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT-SSCEEEEC-----------------------
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-CCeEEEcC-----------------------
Confidence 36888999999999999988654 3489999999999999873 1 11101122
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-cc
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SL 226 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~---~G-~~ 226 (299)
...+..+. |++++..-++|||.|++=.- -||+. .| ++
T Consensus 89 -----------g~~st~~a---i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l 154 (306)
T 1o5k_A 89 -----------GTNSTEKT---LKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNV 154 (306)
T ss_dssp -----------CCSCHHHH---HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCC
T ss_pred -----------CCccHHHH---HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCC
Confidence 11125566 88999999999999998652 15653 23 57
Q ss_pred cHHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCC---CcccccCCCCchhhhhhhcccCC
Q 022296 227 RADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGP---KVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 227 r~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG~---~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
..+.+.+++++. .+|+- |+ ++-.+...+++..++ ++.+. .-+|-+.+++|..|--|
T Consensus 155 ~~~~~~~La~~~--pnIvgiKdssgd~~~~~~~~~~~~~~~~~f~v~-~G~d~~~l~~l~~G~~G 216 (306)
T 1o5k_A 155 LPETAARIAADL--KNVVGIXEANPDIDQIDRTVSLTKQARSDFMVW-SGNDDRTFYLLCAGGDG 216 (306)
T ss_dssp CHHHHHHHHHHC--TTEEEEEECCCCHHHHHHHHHHHHHHCTTCEEE-ESSGGGHHHHHHHTCCE
T ss_pred CHHHHHHHHHhC--CCEEEEeCCCCCHHHHHHHHHhcCCCCCcEEEE-ECcHHHHHHHHHCCCCE
Confidence 788888887334 44543 44 456667777777765 65553 33445678888866433
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=85.36 E-value=3.2 Score=39.07 Aligned_cols=141 Identities=10% Similarity=0.082 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ++.-=+|+
T Consensus 53 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g-rvpViaGv------------------------ 107 (343)
T 2v9d_A 53 GTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDR-RVPVLIGT------------------------ 107 (343)
T ss_dssp HHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEEC------------------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEec------------------------
Confidence 57888999999999999886543 479999999999999873 1 11111122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-ccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~---~G-~~r 227 (299)
...+..+. |+.++..-++|||.|++=.- -||+. .| ++.
T Consensus 108 ----------g~~st~ea---i~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~ 174 (343)
T 2v9d_A 108 ----------GGTNARET---IELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLT 174 (343)
T ss_dssp ----------CSSCHHHH---HHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCC
T ss_pred ----------CCCCHHHH---HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCC
Confidence 11125566 89999999999999998652 15653 23 577
Q ss_pred HHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhC---CCcccccCCCCchhhhhhhccc
Q 022296 228 ADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYG---PKVNLFVDHSQVMDLECLRGRN 283 (299)
Q Consensus 228 ~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG---~~VNLgI~~~eVi~LE~LR~~~ 283 (299)
.+.+.+++++. .+|+- |+ .+-.+...+++..+ +++.+.- -+|-+-+++|..|-
T Consensus 175 ~e~~~~La~~~--pnIvgiKdssgd~~~~~~l~~~~~~~~~~f~v~~-G~D~~~l~~l~~Ga 233 (343)
T 2v9d_A 175 PALVKTLADSR--SNIIGIKDTIDSVAHLRSMIHTVKGAHPHFTVLC-GYDDHLFNTLLLGG 233 (343)
T ss_dssp HHHHHHHHHHC--TTEEEEEECCSCHHHHHHHHHHHHHHCTTCEEEE-SSGGGHHHHHHTTC
T ss_pred HHHHHHHHHhC--CCEEEEEeCCCCHHHHHHHHHhcCCCCCCEEEEE-CcHHHHHHHHHCCC
Confidence 88888887334 34432 55 45667777888877 6666543 34455788888663
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=85.20 E-value=2.4 Score=38.67 Aligned_cols=137 Identities=9% Similarity=0.026 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ .|+ |.
T Consensus 21 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~gVi--aGv-------g~----------------- 74 (288)
T 2nuw_A 21 ALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHKLI--FQV-------GS----------------- 74 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSCEE--EEC-------CC-----------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCeE--Eee-------CC-----------------
Confidence 67888999999999999886543 47999999999999988410011 222 11
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc-CCCcccHHHHHHHHhccCCCceEEecCCc---hhHH
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIGRLGLEKTMFEATNP---RTSE 254 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d-~~G~~r~d~i~~ii~~l~~eklifEAP~k---~qQ~ 254 (299)
.+..+. |+.++..-++|||.|++=.--.+. .+-+---+-..+|++..++-=++.--|.. +-..
T Consensus 75 ----------~~t~~a---i~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~ 141 (288)
T 2nuw_A 75 ----------LNLNDV---MELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPP 141 (288)
T ss_dssp ----------SCHHHH---HHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCH
T ss_pred ----------CCHHHH---HHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCH
Confidence 114556 888999999999999997653333 11111112234566666666666666632 2233
Q ss_pred HHHHHhCCCccc-cc--CCCCchhhhhhhc
Q 022296 255 WFIRRYGPKVNL-FV--DHSQVMDLECLRG 281 (299)
Q Consensus 255 ~fI~~fG~~VNL-gI--~~~eVi~LE~LR~ 281 (299)
..+.++ |+ || +..++-.+..++.
T Consensus 142 ~~~~~L----nIvgiKdssgd~~~~~~~~~ 167 (288)
T 2nuw_A 142 SILKSL----PVKGIKDTNQDLAHSLEYKL 167 (288)
T ss_dssp HHHTTT----TEEEEEECCSCHHHHHHHHH
T ss_pred HHHhcc----EEEEEEeCCCCHHHHHHHHh
Confidence 444444 55 33 3334555555543
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=85.14 E-value=2.1 Score=36.15 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=57.4
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
.+....++++..++++|++|+|++.+.-...+.+++.- +.+ ++++..+--+ .+ --+.|.+.+.+.|.|.
T Consensus 11 ~~~~~~~~~~~~~~~v~~iev~~~~~~~~g~~~i~~l~---~~~~~~~i~~~l~~-----~d--i~~~~~~~a~~~Gad~ 80 (207)
T 3ajx_A 11 STEAALELAGKVAEYVDIIELGTPLIKAEGLSVITAVK---KAHPDKIVFADMKT-----MD--AGELEADIAFKAGADL 80 (207)
T ss_dssp CHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHH---HHSTTSEEEEEEEE-----CS--CHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHhhccCCEEEECcHHHHhhCHHHHHHHH---HhCCCCeEEEEEEe-----cC--ccHHHHHHHHhCCCCE
Confidence 45688889999999999999999865434444444422 223 5554432000 01 1244677788888888
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 118 IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
|-|..+.- .+.-.++++.+++.|..
T Consensus 81 v~vh~~~~---~~~~~~~~~~~~~~g~~ 105 (207)
T 3ajx_A 81 VTVLGSAD---DSTIAGAVKAAQAHNKG 105 (207)
T ss_dssp EEEETTSC---HHHHHHHHHHHHHHTCE
T ss_pred EEEeccCC---hHHHHHHHHHHHHcCCc
Confidence 87766543 23344566666666655
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=85.12 E-value=2 Score=39.19 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+ |
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGv-------g---------------- 77 (289)
T 2yxg_A 22 GLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNG-RVQVIAGA-------G---------------- 77 (289)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEC-------C----------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEeC-------C----------------
Confidence 6788899999999999988654 3479999999999999873 2 11111222 1
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~----~G~~r 227 (299)
..+..+. |+.++..-++|||.|++=.- -||+. .-++.
T Consensus 78 -----------~~~t~~a---i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~ 143 (289)
T 2yxg_A 78 -----------SNCTEEA---IELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLE 143 (289)
T ss_dssp -----------CSSHHHH---HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCC
T ss_pred -----------CCCHHHH---HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCC
Confidence 1124556 88899999999999998652 15553 22567
Q ss_pred HHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.+++++. .+|+- |+ .+-.+...+++.. ++.+ ..-+|-+.+++|..|--|
T Consensus 144 ~~~~~~La~~~--pnivgiK~s~gd~~~~~~~~~~~--~f~v-~~G~d~~~~~~l~~G~~G 199 (289)
T 2yxg_A 144 PKTVKLLAEEY--SNISAVKEANPNLSQVSELIHDA--KITV-LSGNDELTLPIIALGGKG 199 (289)
T ss_dssp HHHHHHHHHHC--TTEEEEEECCSCTHHHHHHHHHT--CSEE-EESCGGGHHHHHHTTCCE
T ss_pred HHHHHHHHHhC--CCEEEEEeCCCCHHHHHHHHHhC--CeEE-EECcHHHHHHHHHCCCCE
Confidence 78888887333 34432 55 4556666677665 3333 334455678888866443
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.08 E-value=4.2 Score=36.02 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=72.4
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
+.+.+++.- +|++=+ +++.+.+++.+++-++.+|++|+.+.... ... +..+.+.+.|+|+|=++
T Consensus 93 ~i~~~~~aG---ad~I~l--~~~~~~~p~~l~~~i~~~~~~g~~v~~~v----------~t~-eea~~a~~~Gad~Ig~~ 156 (229)
T 3q58_A 93 DVDALAQAG---ADIIAF--DASFRSRPVDIDSLLTRIRLHGLLAMADC----------STV-NEGISCHQKGIEFIGTT 156 (229)
T ss_dssp HHHHHHHHT---CSEEEE--ECCSSCCSSCHHHHHHHHHHTTCEEEEEC----------SSH-HHHHHHHHTTCSEEECT
T ss_pred HHHHHHHcC---CCEEEE--CccccCChHHHHHHHHHHHHCCCEEEEec----------CCH-HHHHHHHhCCCCEEEec
Confidence 444444443 455533 33444444679999999999999877641 012 22355678999999543
Q ss_pred C-Cccc---CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhh
Q 022296 122 V-GSLE---IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINK 197 (299)
Q Consensus 122 d-Gti~---i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (299)
. |... ....+ .++++.+++.+..|..|-|+. +
T Consensus 157 ~~g~t~~~~~~~~~-~~li~~l~~~~ipvIA~GGI~---t---------------------------------------- 192 (229)
T 3q58_A 157 LSGYTGPITPVEPD-LAMVTQLSHAGCRVIAEGRYN---T---------------------------------------- 192 (229)
T ss_dssp TTTSSSSCCCSSCC-HHHHHHHHTTTCCEEEESSCC---S----------------------------------------
T ss_pred CccCCCCCcCCCCC-HHHHHHHHHcCCCEEEECCCC---C----------------------------------------
Confidence 2 2211 11112 367777776566666666662 0
Q ss_pred HHHHHHHHHccCcEEEEecccccc
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCK 221 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d 221 (299)
.+.+++.+++||+-|+| +..|++
T Consensus 193 ~~d~~~~~~~GadgV~V-Gsai~~ 215 (229)
T 3q58_A 193 PALAANAIEHGAWAVTV-GSAITR 215 (229)
T ss_dssp HHHHHHHHHTTCSEEEE-CHHHHC
T ss_pred HHHHHHHHHcCCCEEEE-chHhcC
Confidence 23347889999999999 555664
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=84.97 E-value=3.2 Score=38.15 Aligned_cols=143 Identities=10% Similarity=0.092 Sum_probs=85.9
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhC-CchHHHHHHHHHHcCCCEEEe
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG-PSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg-~~~~~~yl~~~k~lGF~~IEI 120 (299)
.+-+.|..+| +|.+=.||..+.=.+.+.+++..+.. -++.++. +.++ +..++..++..+..|.+.|-|
T Consensus 31 ~i~~~L~~~G--v~~IE~g~p~~~~~d~e~v~~i~~~~--~~~~i~~-------l~~~~~~di~~a~~~~~~ag~~~v~i 99 (293)
T 3ewb_X 31 QIALQLEKLG--IDVIEAGFPISSPGDFECVKAIAKAI--KHCSVTG-------LARCVEGDIDRAEEALKDAVSPQIHI 99 (293)
T ss_dssp HHHHHHHHHT--CSEEEEECGGGCHHHHHHHHHHHHHC--CSSEEEE-------EEESSHHHHHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHHcC--CCEEEEeCCCCCccHHHHHHHHHHhc--CCCEEEE-------EecCCHHHHHHHHHHHhhcCCCEEEE
Confidence 4445566666 77888888665322333444433322 2343321 1111 114666677777789998887
Q ss_pred cCCccc--------CChh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 121 NVGSLE--------IPEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 121 SdGti~--------i~~~----~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
...+-+ .+.+ .-.+.|+.+++.|+.|. |+..+. . .
T Consensus 100 ~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~--~~~~d~-----~--------------------------~ 146 (293)
T 3ewb_X 100 FLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQ--FSPEDA-----T--------------------------R 146 (293)
T ss_dssp EEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEE--EEEETG-----G--------------------------G
T ss_pred EecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEE--EEeccC-----C--------------------------C
Confidence 654432 2222 34577888899887753 444210 0 0
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHh
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~ 236 (299)
.+++.+ ++.+++..++||+.| .|+|..|-..+..+.++++
T Consensus 147 ~~~~~~---~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~ 186 (293)
T 3ewb_X 147 SDRAFL---IEAVQTAIDAGATVI-----NIPDTVGYTNPTEFGQLFQ 186 (293)
T ss_dssp SCHHHH---HHHHHHHHHTTCCEE-----EEECSSSCCCHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHcCCCEE-----EecCCCCCCCHHHHHHHHH
Confidence 126777 888999999999976 4788888888877776664
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=84.90 E-value=4.9 Score=34.64 Aligned_cols=92 Identities=7% Similarity=-0.025 Sum_probs=56.4
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC--CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (299)
.+....++++..+.++|++|+|+=-..-...+.+++ .+++ +.++.. .-+.+ .-..|.+.|.+.|.
T Consensus 17 ~~~~~~~~~~~~~~~vd~ie~g~~~~~~~G~~~i~~----lr~~~~~~~i~ld~~l~d--------~p~~~~~~~~~aGa 84 (218)
T 3jr2_A 17 NLTDAVAVASNVASYVDVIEVGTILAFAEGMKAVST----LRHNHPNHILVCDMKTTD--------GGAILSRMAFEAGA 84 (218)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECHHHHHHHTTHHHHH----HHHHCTTSEEEEEEEECS--------CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhcCCceEEEeCcHHHHhcCHHHHHH----HHHhCCCCcEEEEEeecc--------cHHHHHHHHHhcCC
Confidence 566777888888889999999952111122333333 3333 444432 11211 11347789999999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
|.|-+-+-.. .+...++++.+++.|.+
T Consensus 85 d~i~vh~~~~---~~~~~~~~~~~~~~g~~ 111 (218)
T 3jr2_A 85 DWITVSAAAH---IATIAACKKVADELNGE 111 (218)
T ss_dssp SEEEEETTSC---HHHHHHHHHHHHHHTCE
T ss_pred CEEEEecCCC---HHHHHHHHHHHHHhCCc
Confidence 9998876542 34456788888887654
|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=84.72 E-value=1 Score=39.46 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=68.4
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-c------HHHH-------------HHHhCCc
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-D------WAEH-------------LIRNGPS 101 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-t------lfE~-------------a~~qg~~ 101 (299)
..=+.+..+| .|.+=+.+......+++.+++..++++++|+.+..- . +... ...+.-+
T Consensus 25 ~~l~~~~~~G--~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~ 102 (290)
T 3tva_A 25 VHLEVAQDLK--VPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVA 102 (290)
T ss_dssp BCHHHHHHTT--CSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHH
T ss_pred HHHHHHHHcC--CCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHH
Confidence 4444455555 677777765444455677999999999999976542 1 1110 0000012
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hhH-------HHHHHHHHHHcCCcccceee
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIP-EET-------LLRYVRLVKSAGLKAKPKFA 151 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~-~~~-------r~~lI~~~~~~G~~v~~E~g 151 (299)
.+++.++.|+++|.+.|=+..|...-. .+. ..++.+.+++.|+++.-|-.
T Consensus 103 ~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~ 160 (290)
T 3tva_A 103 EMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHLETG 160 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 689999999999999999987765322 222 34455667777887655554
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=84.60 E-value=6.6 Score=38.28 Aligned_cols=74 Identities=9% Similarity=0.170 Sum_probs=47.0
Q ss_pred HHHHH---HhhcccccEEEeeCcc------cccCChhHHHHHHHHHHhC---------------------Cce-----ec
Q 022296 43 LEDIF---ESMGQFVDGLKFSGGS------HSLMPKPFIEEVVKRAHQH---------------------DVY-----VS 87 (299)
Q Consensus 43 l~DlL---e~ag~yID~lKfg~GT------s~l~p~~~l~eKI~l~~~~---------------------gV~-----v~ 87 (299)
.+|++ +...+|.|++=+=.+| ..+..++.+.+.++-.++. .++ +.
T Consensus 198 ~~Dy~~~a~~l~~~ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~ 277 (415)
T 3i65_A 198 VDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLA 277 (415)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEec
Confidence 45544 4456777887766544 4466777777777666553 233 34
Q ss_pred CC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc
Q 022296 88 TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125 (299)
Q Consensus 88 ~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti 125 (299)
|+ +. +.+.+..+.|.+.|.|.|-++|.+.
T Consensus 278 pd~~~---------~~i~~iA~~a~~aGaDgIiv~Ntt~ 307 (415)
T 3i65_A 278 PDLNQ---------EQKKEIADVLLETNIDGMIISNTTT 307 (415)
T ss_dssp SCCCH---------HHHHHHHHHHHHHTCSEEEECCCBS
T ss_pred CCCCH---------HHHHHHHHHHHHcCCcEEEEeCCCc
Confidence 54 21 1567888889999999999999876
|
| >3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=84.57 E-value=0.82 Score=39.98 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E 149 (299)
.+++.++.++++||++||+. +.. + +..++-+.+++.|+++..-
T Consensus 32 ~~~~~l~~~~~~G~~~vEl~-~~~--~--~~~~~~~~l~~~gl~~~~~ 74 (301)
T 3cny_A 32 NLQQLLSDIVVAGFQGTEVG-GFF--P--GPEKLNYELKLRNLEIAGQ 74 (301)
T ss_dssp CHHHHHHHHHHHTCCEECCC-TTC--C--CHHHHHHHHHHTTCEECEE
T ss_pred CHHHHHHHHHHhCCCEEEec-CCC--C--CHHHHHHHHHHCCCeEEEE
Confidence 58888999999999999998 332 3 5567778888888887653
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=84.54 E-value=2.6 Score=38.59 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ +|+ |.
T Consensus 21 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~gvi--aGv-------g~----------------- 74 (293)
T 1w3i_A 21 KLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKII--FQV-------GG----------------- 74 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSCEE--EEC-------CC-----------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCCEE--Eec-------CC-----------------
Confidence 57888999999999999886543 47999999999999998410011 222 11
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
.+..+. |+.++..-++|||.|++=.-
T Consensus 75 ----------~~t~~a---i~la~~A~~~Gadavlv~~P 100 (293)
T 1w3i_A 75 ----------LNLDDA---IRLAKLSKDFDIVGIASYAP 100 (293)
T ss_dssp ----------SCHHHH---HHHHHHGGGSCCSEEEEECC
T ss_pred ----------CCHHHH---HHHHHHHHhcCCCEEEEcCC
Confidence 114556 88899999999999998654
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=84.53 E-value=1.7 Score=39.67 Aligned_cols=142 Identities=11% Similarity=0.066 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.++++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGv------------------------ 77 (292)
T 2ojp_A 23 SLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADG-RIPVIAGT------------------------ 77 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEEC------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC-CCcEEEec------------------------
Confidence 5788899998999999988654 3489999999999999873 2 11111222
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-ccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~---~G-~~r 227 (299)
...+..+. |+.++..-++|||.|++=.- -||+. .| ++.
T Consensus 78 ----------g~~~t~~a---i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~ 144 (292)
T 2ojp_A 78 ----------GANATAEA---ISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLL 144 (292)
T ss_dssp ----------CCSSHHHH---HHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCC
T ss_pred ----------CCccHHHH---HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCC
Confidence 11124566 88999999999999998652 15653 23 567
Q ss_pred HHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.++++ ..+|+- |+ ++-.+...+++..++++.+.-- +|-+.+++|..|--|
T Consensus 145 ~~~~~~La~---~pnivgiK~s~gd~~~~~~~~~~~~~~f~v~~G-~d~~~~~~l~~G~~G 201 (292)
T 2ojp_A 145 PETVGRLAK---VKNIIGIXEATGNLTRVNQIKELVSDDFVLLSG-DDASALDFMQYGGHG 201 (292)
T ss_dssp HHHHHHHHT---STTEEEC-CCSCCTHHHHHHHTTSCTTSBCEES-CGGGHHHHHHTTCCE
T ss_pred HHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHhcCCCEEEEEC-cHHHHHHHHHCCCcE
Confidence 788888763 345543 44 4566666777777776665433 344567888766433
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=84.50 E-value=2.8 Score=39.02 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=63.0
Q ss_pred HHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 107 VEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
.+..-+.|..+|-|-||.. =+|.++.++-|+.+++.+- .+.|-++- ..|. +
T Consensus 100 v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~--~~~~~i~a-------Rtda-~-------- 161 (295)
T 1xg4_A 100 VKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKT--DPDFVIMA-------RTDA-L-------- 161 (295)
T ss_dssp HHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCS--STTSEEEE-------EECC-H--------
T ss_pred HHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhcc--CCCcEEEE-------ecHH-h--------
Confidence 3444457999999999962 3788888888888888643 23344420 0110 0
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
| . -..+++ |++++...+||||.|.+|+. ...+++.+|.+.++
T Consensus 162 ~-~----------~gl~~a---i~ra~ay~eAGAd~i~~e~~--------~~~~~~~~i~~~~~ 203 (295)
T 1xg4_A 162 A-V----------EGLDAA---IERAQAYVEAGAEMLFPEAI--------TELAMYRQFADAVQ 203 (295)
T ss_dssp H-H----------HCHHHH---HHHHHHHHHTTCSEEEETTC--------CSHHHHHHHHHHHC
T ss_pred h-h----------cCHHHH---HHHHHHHHHcCCCEEEEeCC--------CCHHHHHHHHHHcC
Confidence 0 0 014677 99999999999999999985 13567777777666
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=84.37 E-value=2.3 Score=39.34 Aligned_cols=160 Identities=13% Similarity=-0.008 Sum_probs=96.4
Q ss_pred CCceecCCcHHHH-HHHhCCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCC
Q 022296 82 HDVYVSTGDWAEH-LIRNGPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNK 156 (299)
Q Consensus 82 ~gV~v~~GtlfE~-a~~qg~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~ 156 (299)
.||.+..=|.|-- --.=+.+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 13 ~Gv~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGv---- 88 (316)
T 3e96_A 13 ETISGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGI---- 88 (316)
T ss_dssp SSEEECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEE----
T ss_pred CceEEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEe----
Confidence 5665555554411 001112368889999999999999876544 589999999999999884 0011111122
Q ss_pred CCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------
Q 022296 157 SDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD------------------- 217 (299)
Q Consensus 157 sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar------------------- 217 (299)
| . +..+. |+.++..-++|||.|++=.-
T Consensus 89 ----------------------------g--~-~t~~a---i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 134 (316)
T 3e96_A 89 ----------------------------G--Y-ATSTA---IELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIE 134 (316)
T ss_dssp ----------------------------C--S-SHHHH---HHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHH
T ss_pred ----------------------------C--c-CHHHH---HHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 0 0 14555 88889999999999998531
Q ss_pred ------ccccCCCcccHHHHHHHHhccCCCceE--Eec-CCchhHHHHHHHhCC-Ccc-cccCCCCchhhhhhhcc
Q 022296 218 ------DVCKHADSLRADIIAKVIGRLGLEKTM--FEA-TNPRTSEWFIRRYGP-KVN-LFVDHSQVMDLECLRGR 282 (299)
Q Consensus 218 ------gi~d~~G~~r~d~i~~ii~~l~~ekli--fEA-P~k~qQ~~fI~~fG~-~VN-LgI~~~eVi~LE~LR~~ 282 (299)
-+|+..-++-.+.+.+++ +.| +|+ =|+ ++-.+...+++..++ +.. +.--.++.+.++.|..|
T Consensus 135 a~~lPiilYn~g~~l~~~~~~~La-~~p--nIvgiKdssgd~~~~~~~~~~~~~~~f~~v~~G~d~~~~~~~l~~G 207 (316)
T 3e96_A 135 ALDFPSLVYFKDPEISDRVLVDLA-PLQ--NLVGVKYAINDLPRFAKVVRSIPEEHQIAWICGTAEKWAPFFWHAG 207 (316)
T ss_dssp HHTSCEEEEECCTTSCTHHHHHHT-TCT--TEEEEEECCCCHHHHHHHHTTSCGGGCCEEEETTCTTTHHHHHHHT
T ss_pred hCCCCEEEEeCCCCCCHHHHHHHH-cCC--CEEEEEeCCCCHHHHHHHHHhcCCCCceEEEeCChHHHHHHHHHCC
Confidence 156643356667777775 333 332 233 455666667766665 554 44334455555555544
|
| >2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85, glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A {Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A* | Back alignment and structure |
|---|
Probab=84.36 E-value=2.7 Score=43.05 Aligned_cols=90 Identities=17% Similarity=0.327 Sum_probs=57.8
Q ss_pred hcccccEEEeeCccc----ccCChhHHHHHHHHHHhCCceecCCc-------------HHHHHHHhCCc----hHHHHHH
Q 022296 50 MGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVSTGD-------------WAEHLIRNGPS----AFKEYVE 108 (299)
Q Consensus 50 ag~yID~lKfg~GTs----~l~p~~~l~eKI~l~~~~gV~v~~Gt-------------lfE~a~~qg~~----~~~~yl~ 108 (299)
.=+|||..=. |+-+ .+.|+. -.-|+.||+|||+|. || |++-++.++.+ -+++.++
T Consensus 88 ~W~yvD~fvy-fshs~~~~~~~~P~--~~widaAHrnGV~Vl-Gt~~fe~~~~gg~~~~~~~lL~~~~~~~~~~a~kLv~ 163 (626)
T 2vtf_A 88 YWHYTDLMVY-WAGSAGEGIIVPPS--ADVIDASHRNGVPIL-GNVFFPPTVYGGQLEWLEQMLEQEEDGSFPLADKLLE 163 (626)
T ss_dssp CGGGCSEEEE-CCCBTTTBSEECCC--HHHHHHHHHTTCCEE-EEEEECCGGGTCCHHHHHHHTCCCTTCCCHHHHHHHH
T ss_pred cccceeeeee-ecCCCccceeeCCC--cHHHHHHHHcCCEEE-EEEecCcccCCcHHHHHHHHhccCccchHHHHHHHHH
Confidence 3468997643 4322 333422 357899999999886 32 45566645432 2799999
Q ss_pred HHHHcCCCEEEecCCcccCChhHH---HHHHHHHHHcC
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETL---LRYVRLVKSAG 143 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r---~~lI~~~~~~G 143 (299)
.|+.+|||.+=|+-=+-.++.+.. ..+++.+++.+
T Consensus 164 ~a~~yGFDGw~IN~E~~~~~~~~~~~l~~F~~~L~~~~ 201 (626)
T 2vtf_A 164 VADYYGFDGWFINQQTEGADEGTAEAMQAFLVYLQEQK 201 (626)
T ss_dssp HHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCceEEeeccccCCHHHHHHHHHHHHHHHHhC
Confidence 999999999888765534555443 44555556543
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=84.24 E-value=6.9 Score=35.81 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=94.3
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. |-++.-=+|+
T Consensus 28 ~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGv----------------------- 84 (301)
T 3m5v_A 28 QSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGA----------------------- 84 (301)
T ss_dssp HHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEEC-----------------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeC-----------------------
Confidence 368889999999999999775443 479999999999999884 1011111122
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCcc
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSL 226 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~----~G~~ 226 (299)
...+..+. |+.++..-++|||.|++=.- -||+. .-++
T Consensus 85 -----------g~~~t~~a---i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l 150 (301)
T 3m5v_A 85 -----------GSNATHEA---VGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEI 150 (301)
T ss_dssp -----------CCSSHHHH---HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCC
T ss_pred -----------CCCCHHHH---HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCC
Confidence 11125566 89999999999999999762 14553 2366
Q ss_pred cHHHHHHHHhccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 227 RADIIAKVIGRLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 227 r~d~i~~ii~~l~-~eklifEAP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
..+.+.++++..| +-=+=...++-.+...+++.. +++.+.-- +|-+.+++|..|--|
T Consensus 151 ~~~~~~~La~~~pnivgiKdssgd~~~~~~~~~~~-~~f~v~~G-~d~~~~~~l~~G~~G 208 (301)
T 3m5v_A 151 STDTIIKLFRDCENIYGVKEASGNIDKCVDLLAHE-PRMMLISG-EDAINYPILSNGGKG 208 (301)
T ss_dssp CHHHHHHHHHHCTTEEEEEECSSCHHHHHHHHHHC-TTSEEEEC-CGGGHHHHHHTTCCE
T ss_pred CHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhC-CCeEEEEc-cHHHHHHHHHcCCCE
Confidence 7778887775323 111112334666677777777 76666433 344567888766433
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=84.12 E-value=4.6 Score=37.46 Aligned_cols=111 Identities=9% Similarity=0.043 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.++++++++-+-|.+.|=+.-.|- .|+.++|.++++.+.+.- =++.-=+|+
T Consensus 33 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv------------------------- 87 (318)
T 3qfe_A 33 SQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGV------------------------- 87 (318)
T ss_dssp HHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC-------------------------
Confidence 688889999999999998765443 699999999999998831 011101122
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccC--CCcccHHHHHHHHhccCCCceEEecCC
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH--ADSLRADIIAKVIGRLGLEKTMFEATN 249 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~--~G~~r~d~i~~ii~~l~~eklifEAP~ 249 (299)
...+..+. |+.++..-++|||.|++=.--.|.. +.+---+-...|++..++-=++.--|.
T Consensus 88 ---------g~~~t~~a---i~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~ 149 (318)
T 3qfe_A 88 ---------GAHSTRQV---LEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPG 149 (318)
T ss_dssp ---------CCSSHHHH---HHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEECCC
T ss_pred ---------CCCCHHHH---HHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCc
Confidence 11125566 8889999999999999855322221 101111223344444555555555553
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=83.70 E-value=3.4 Score=37.74 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=22.2
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHh
Q 022296 199 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~ 236 (299)
+.+++.+++||+-|+| ++.|++.. ++ ...+.++++
T Consensus 226 edv~~l~~~GadgvlV-Gsal~~a~-dp-~~~~~~l~~ 260 (272)
T 3qja_A 226 ADLLAYAGAGADAVLV-GEGLVTSG-DP-RAAVADLVT 260 (272)
T ss_dssp HHHHHHHHTTCSEEEE-CHHHHTCS-CH-HHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEE-cHHHhCCC-CH-HHHHHHHHh
Confidence 4447889999999998 34466655 21 334455554
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=83.69 E-value=13 Score=34.91 Aligned_cols=195 Identities=15% Similarity=0.172 Sum_probs=111.4
Q ss_pred hhHHHHHHHhhccc--ccEEEeeCcccccCChhHHHHHHHHHHh--CCceecC----CcHHHHHHHhCCchHHHHHHHHH
Q 022296 40 HNVLEDIFESMGQF--VDGLKFSGGSHSLMPKPFIEEVVKRAHQ--HDVYVST----GDWAEHLIRNGPSAFKEYVEDCK 111 (299)
Q Consensus 40 ~~~l~DlLe~ag~y--ID~lKfg~GTs~l~p~~~l~eKI~l~~~--~gV~v~~----GtlfE~a~~qg~~~~~~yl~~~k 111 (299)
...++.+++.|-+- ==+|-++-|+...++.+.+...+..+.+ ++|+|+. |.-+ +.+..|-
T Consensus 27 ~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValHLDHg~~~------------e~~~~ai 94 (307)
T 3n9r_A 27 FEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTF------------ESCEKAV 94 (307)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTTSCEEEEEEEECSH------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCH------------HHHHHHH
Confidence 34455555544321 0134555555444555566666655544 5677764 3333 3445677
Q ss_pred HcCCCEEEecCCcccCChh--HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 112 QVGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 112 ~lGF~~IEISdGti~i~~~--~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
+.||+.|=|.--..++.+- .=.++++.++..|.-|--|+|.=-+ .+|. +....-+..+|
T Consensus 95 ~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~igG------~Ed~-----~~~~~~~~~yT-------- 155 (307)
T 3n9r_A 95 KAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMG------IEDN-----ISVDEKDAVLV-------- 155 (307)
T ss_dssp HHTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCC------C---------------CCSC--------
T ss_pred HhCCCcEEEECCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeecc------ccCC-----cccccccccCC--------
Confidence 8999999996554443321 2236788888999999999998311 1220 00000001111
Q ss_pred chhhhhhhHHHHHHHH-HccCcEEEEe---ccccccC--CCcccHHHHHHHHhccCCCceEEecC--CchhHHHHHHHhC
Q 022296 190 EVGVGINKSRRAERCL-EAGADMIMID---SDDVCKH--ADSLRADIIAKVIGRLGLEKTMFEAT--NPRTSEWFIRRYG 261 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dL-eAGA~~VIiE---argi~d~--~G~~r~d~i~~ii~~l~~eklifEAP--~k~qQ~~fI~~fG 261 (299)
+|++. +++. +-|.|.+=+= +-|.|.. +-.++.|.+++|-+..+.- |.+=-- -|+.-...|+.||
T Consensus 156 ~Peea-------~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~~~P-LVlHGgS~vp~~~~~~~~~~g 227 (307)
T 3n9r_A 156 NPKEA-------EQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIP-LVLHGASAIPDNVRKSYLDAG 227 (307)
T ss_dssp CHHHH-------HHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHHCSC-EEESSCCCCCHHHHHHHHHTT
T ss_pred CHHHH-------HHHHHHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcCCCC-eEEeCCCCcchHHHHHHHHhc
Confidence 26666 4454 3798876553 2389973 4578999999994322322 444432 3667778899999
Q ss_pred CCccc--ccCCCCc
Q 022296 262 PKVNL--FVDHSQV 273 (299)
Q Consensus 262 ~~VNL--gI~~~eV 273 (299)
-++.= ||+.+|+
T Consensus 228 g~~~~~~G~p~e~i 241 (307)
T 3n9r_A 228 GDLKGSKGVPFEFL 241 (307)
T ss_dssp CCCTTCBCCCHHHH
T ss_pred CccCCCCCCCHHHH
Confidence 98876 4666555
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=83.58 E-value=11 Score=31.50 Aligned_cols=86 Identities=12% Similarity=0.074 Sum_probs=54.9
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhC---CceecCCcHHHHHHHhCCchHHHHHHHHHHcC
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH---DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~---gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (299)
.+....++.+.+-++ +|++-+.+++... .+-|+.+|+. ++.+-.|+- . ..++ .+.|.+.|
T Consensus 20 ~~~~~~~~~~~~~~~G~~~iev~~~~~~~------~~~i~~ir~~~~~~~~ig~~~v------~---~~~~-~~~a~~~G 83 (205)
T 1wa3_A 20 SVEEAKEKALAVFEGGVHLIEITFTVPDA------DTVIKELSFLKEKGAIIGAGTV------T---SVEQ-CRKAVESG 83 (205)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEETTSTTH------HHHHHHTHHHHHTTCEEEEESC------C---SHHH-HHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhH------HHHHHHHHHHCCCCcEEEeccc------C---CHHH-HHHHHHcC
Confidence 344666667666665 9999998876321 2223334332 454443331 1 2233 46777899
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.|+| ++.++- .++++.+++.|..+++
T Consensus 84 ad~i-v~~~~~-------~~~~~~~~~~g~~vi~ 109 (205)
T 1wa3_A 84 AEFI-VSPHLD-------EEISQFCKEKGVFYMP 109 (205)
T ss_dssp CSEE-ECSSCC-------HHHHHHHHHHTCEEEC
T ss_pred CCEE-EcCCCC-------HHHHHHHHHcCCcEEC
Confidence 9999 998864 3588899999999888
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=83.44 E-value=2 Score=40.18 Aligned_cols=142 Identities=8% Similarity=0.093 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+ .
T Consensus 56 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g-rvpViaGv---g-------------------- 111 (332)
T 2r8w_A 56 AFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRG-RRTLMAGI---G-------------------- 111 (332)
T ss_dssp HHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEE---C--------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEec---C--------------------
Confidence 5788899999999999988654 3489999999999999873 1 11111133 1
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-ccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~---~G-~~r 227 (299)
..+..+. |+.++..-++|||-|++=.- -||+. .| ++.
T Consensus 112 -----------~~st~ea---i~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~ 177 (332)
T 2r8w_A 112 -----------ALRTDEA---VALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFS 177 (332)
T ss_dssp -----------CSSHHHH---HHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCC
T ss_pred -----------CCCHHHH---HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCC
Confidence 1124566 88999999999999998652 15653 23 577
Q ss_pred HHHHHHHHhccCCCceEE--ec-CC----chhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLGLEKTMF--EA-TN----PRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~~eklif--EA-P~----k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.++++ ..+|+- |+ ++ -.+...+++..++++.++-- +|-+.+++|..|--|
T Consensus 178 ~e~~~~La~---~pnIvgiKdssgd~~~~~~~~~~l~~~~~~~f~v~~G-~D~~~l~~l~~G~~G 238 (332)
T 2r8w_A 178 DELLVRLAY---IPNIRAIKMPLPADADYAGELARLRPKLSDDFAIGYS-GDWGCTDATLAGGDT 238 (332)
T ss_dssp HHHHHHHHT---STTEEEEEECCCTTCCHHHHHHHHTTTSCTTCEEEEC-CHHHHHHHHHTTCSE
T ss_pred HHHHHHHHc---CCCEEEEEeCCCCchhHHHHHHHHHHhcCCCEEEEeC-chHHHHHHHHCCCCE
Confidence 788888864 345542 44 34 44555666667776666533 344568888766433
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=83.43 E-value=2.7 Score=38.02 Aligned_cols=79 Identities=14% Similarity=0.046 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHcCCC-EEEecCCcc------c--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022296 102 AFKEYVEDCKQVGFD-TIELNVGSL------E--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~-~IEISdGti------~--i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~ 172 (299)
.+.+..+.+.+.||| +|||+-++= . -+.+...++|+.+++.= -+| +.+|-.
T Consensus 107 ~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~--~~P-v~vKi~----------------- 166 (311)
T 1jub_A 107 ENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF--TKP-LGVKLP----------------- 166 (311)
T ss_dssp HHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC--CSC-EEEEEC-----------------
T ss_pred HHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc--CCC-EEEEEC-----------------
Confidence 455666677788999 999975421 1 25666778888888751 122 445421
Q ss_pred CCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 173 RAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
|. ++.+++ .+.++...++|||.|++-.+
T Consensus 167 ~~--------------~~~~~~---~~~a~~~~~~G~d~i~v~~~ 194 (311)
T 1jub_A 167 PY--------------FDLVHF---DIMAEILNQFPLTYVNSVNS 194 (311)
T ss_dssp CC--------------CSHHHH---HHHHHHHTTSCCCEEEECCC
T ss_pred CC--------------CCHHHH---HHHHHHHHHcCCcEEEecCC
Confidence 10 113444 56678889999999998765
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=83.24 E-value=13 Score=34.03 Aligned_cols=129 Identities=9% Similarity=0.112 Sum_probs=84.3
Q ss_pred hhHHHHHHHhh-cccccEEEeeCcccccC--ChhHHHHHHHHHHh-CCceec--CCcHHHHHHHhCCchHHHHHHHHHHc
Q 022296 40 HNVLEDIFESM-GQFVDGLKFSGGSHSLM--PKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 40 ~~~l~DlLe~a-g~yID~lKfg~GTs~l~--p~~~l~eKI~l~~~-~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~l 113 (299)
+.++.+.++.+ ..-+.-+-|.+|....+ +.+.+.+.++..++ +++.++ +|. .-++.++.+++.
T Consensus 93 ~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~~s~g~-----------~~~e~l~~L~~a 161 (350)
T 3t7v_A 93 MEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLPIMISPGL-----------MDNATLLKAREK 161 (350)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHCSCEEEECSS-----------CCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCEEEEeeCCCCccccCHHHHHHHHHHHHhhcCceEEEeCCC-----------CCHHHHHHHHHc
Confidence 44444444433 23366777777764433 45678888888875 466544 231 346778889999
Q ss_pred CCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 114 GFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 114 GF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
|++.+-++--+. ..+.+++.+.++.+++.|+++.+ +.-.+.. +
T Consensus 162 G~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~--~~i~Glg------e------------------- 214 (350)
T 3t7v_A 162 GANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVED--GILTGVG------N------------------- 214 (350)
T ss_dssp TEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEE--EEEESSS------C-------------------
T ss_pred CCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEcc--ceEeecC------C-------------------
Confidence 999988766554 36788999999999999998554 4433321 1
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEe
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMID 215 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiE 215 (299)
+.+++ ++.++.-.+.+.+.|-+=
T Consensus 215 ------t~e~~---~~~l~~l~~l~~~~v~~~ 237 (350)
T 3t7v_A 215 ------DIEST---ILSLRGMSTNDPDMVRVM 237 (350)
T ss_dssp ------CHHHH---HHHHHHHHHTCCSEEEEE
T ss_pred ------CHHHH---HHHHHHHHhCCCCEEEec
Confidence 03444 666777778898877653
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=83.19 E-value=2.3 Score=38.33 Aligned_cols=162 Identities=14% Similarity=0.205 Sum_probs=87.5
Q ss_pred cccccCChhHHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH
Q 022296 62 GSHSLMPKPFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK 140 (299)
Q Consensus 62 GTs~l~p~~~l~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~ 140 (299)
||--+|=++...+..+..++++| .|.-+.= ++...+..+.|-+-|+++|||.-- ...-.+.|+.++
T Consensus 14 ~~~~~~~~~~m~~~~~~l~~~~vv~Vir~~~--------~~~a~~~a~al~~gGi~~iEvt~~-----t~~a~e~I~~l~ 80 (232)
T 4e38_A 14 GTENLYFQSMMSTINNQLKALKVIPVIAIDN--------AEDIIPLGKVLAENGLPAAEITFR-----SDAAVEAIRLLR 80 (232)
T ss_dssp ------CCCCHHHHHHHHHHHCEEEEECCSS--------GGGHHHHHHHHHHTTCCEEEEETT-----STTHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhCCEEEEEEcCC--------HHHHHHHHHHHHHCCCCEEEEeCC-----CCCHHHHHHHHH
Confidence 55555556677777888888898 5555531 234555677888889999999433 334568888887
Q ss_pred HcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc---
Q 022296 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--- 217 (299)
Q Consensus 141 ~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--- 217 (299)
+. .|+.-+ |. +|- ++ .++++..++|||++|+.=+-
T Consensus 81 ~~----~~~~~i-------Ga-----------------------GTV-lt-------~~~a~~Ai~AGA~fIvsP~~~~~ 118 (232)
T 4e38_A 81 QA----QPEMLI-------GA-----------------------GTI-LN-------GEQALAAKEAGATFVVSPGFNPN 118 (232)
T ss_dssp HH----CTTCEE-------EE-----------------------ECC-CS-------HHHHHHHHHHTCSEEECSSCCHH
T ss_pred Hh----CCCCEE-------eE-----------------------CCc-CC-------HHHHHHHHHcCCCEEEeCCCCHH
Confidence 73 122222 11 000 11 45569999999999985431
Q ss_pred --------ccccCCCcccHHHHHHHHhccCCCceEEecCCchh-HHHHHHHh-C--CCccc---c-cCCCCchhhhhhhc
Q 022296 218 --------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRT-SEWFIRRY-G--PKVNL---F-VDHSQVMDLECLRG 281 (299)
Q Consensus 218 --------gi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~q-Q~~fI~~f-G--~~VNL---g-I~~~eVi~LE~LR~ 281 (299)
|+-==-|-...+++.+-+ +.|.+-|-+ =|-..+ =..||+.+ | |++.+ | |.++++- |.|..
T Consensus 119 vi~~~~~~gi~~ipGv~TptEi~~A~-~~Gad~vK~-FPa~~~gG~~~lkal~~p~p~ip~~ptGGI~~~n~~--~~l~a 194 (232)
T 4e38_A 119 TVRACQEIGIDIVPGVNNPSTVEAAL-EMGLTTLKF-FPAEASGGISMVKSLVGPYGDIRLMPTGGITPSNID--NYLAI 194 (232)
T ss_dssp HHHHHHHHTCEEECEECSHHHHHHHH-HTTCCEEEE-CSTTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHH--HHHTS
T ss_pred HHHHHHHcCCCEEcCCCCHHHHHHHH-HcCCCEEEE-CcCccccCHHHHHHHHHHhcCCCeeeEcCCCHHHHH--HHHHC
Confidence 211001222344444333 366665555 332222 13566654 3 36666 4 7776643 34444
Q ss_pred c
Q 022296 282 R 282 (299)
Q Consensus 282 ~ 282 (299)
|
T Consensus 195 G 195 (232)
T 4e38_A 195 P 195 (232)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=83.13 E-value=0.77 Score=40.76 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=59.6
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHh-CCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFD 116 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~-~gV~v~~Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (299)
......++++..++|+|++|+|.+-..-+..+.+++ .++ +|..+..-- +.. -|+.++.|.+.+.++|.|
T Consensus 23 ~~~~a~~~v~~~~~~v~~~Kvg~~lf~~~G~~~v~~----l~~~~g~~v~lD~Kl~D-----ipnTv~~~~~~~~~~gad 93 (228)
T 3m47_A 23 NRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAE----FRKRFGCRIIADFKVAD-----IPETNEKICRATFKAGAD 93 (228)
T ss_dssp SHHHHHHHHHTTTTTCSEEEEEHHHHHHHCTHHHHH----HHHHHCCEEEEEEEECS-----CHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHcCCcccEEEEcHHHHHhcCHHHHHH----HHhcCCCeEEEEEeecc-----cHhHHHHHHHHHHhCCCC
Confidence 567888999999999999999987776566665554 333 454443321 211 123466677777778888
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcC
Q 022296 117 TIELNVGSLEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G 143 (299)
.|-|.- ....+....+++.+++.|
T Consensus 94 ~vtvh~---~~G~~~l~~~~~~~~~~g 117 (228)
T 3m47_A 94 AIIVHG---FPGADSVRACLNVAEEMG 117 (228)
T ss_dssp EEEEES---TTCHHHHHHHHHHHHHHT
T ss_pred EEEEec---cCCHHHHHHHHHHHHhcC
Confidence 877753 223455556666666554
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=83.05 E-value=5.7 Score=34.68 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=39.8
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.+.|++.|.|+|-|-+---.+|.++-.++++.+++.|+.++.+++-
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~ 120 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNN 120 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESS
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7999999999999955544688888899999999999998888765
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=82.84 E-value=2.2 Score=36.74 Aligned_cols=75 Identities=8% Similarity=-0.052 Sum_probs=46.8
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC--Cceec--------CCcHHHHHHHhCC--------
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVS--------TGDWAEHLIRNGP-------- 100 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~--------~GtlfE~a~~qg~-------- 100 (299)
.+....++++.+++|+|++|+|.|-+.-+..+.+++. +++ |..++ |.|+.|.+..-|-
T Consensus 14 ~~~~~~~~~~~~~~~v~~~kv~~~~f~~~G~~~i~~l----~~~~p~~~v~lD~kl~dip~t~~~~~~~~Gad~itvh~~ 89 (216)
T 1q6o_A 14 TMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDL----KALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICC 89 (216)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHH----HHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHHhcccCCEEEECHHHHHHhCHHHHHHH----HHhCCCCeEEEEEEecccHHHHHHHHHhCCCCEEEEecc
Confidence 4567788899999999999999997765666655543 333 44433 3366665544431
Q ss_pred ---chHHHHHHHHHHcCCCE
Q 022296 101 ---SAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~ 117 (299)
+.++++++.|++.|...
T Consensus 90 ~g~~~l~~~~~~~~~~g~~~ 109 (216)
T 1q6o_A 90 ADINTAKGALDVAKEFNGDV 109 (216)
T ss_dssp SCHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHHcCCCc
Confidence 12455566666655554
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=82.70 E-value=1.1 Score=40.49 Aligned_cols=21 Identities=5% Similarity=-0.081 Sum_probs=16.7
Q ss_pred HHHHHHccCcEEEEeccccccC
Q 022296 201 AERCLEAGADMIMIDSDDVCKH 222 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEargi~d~ 222 (299)
+...|++||..+.+ +.-+++.
T Consensus 188 ~~~~l~aGa~~~vg-Gs~l~~~ 208 (232)
T 4e38_A 188 IDNYLAIPQVLACG-GTWMVDK 208 (232)
T ss_dssp HHHHHTSTTBCCEE-ECGGGCH
T ss_pred HHHHHHCCCeEEEE-CchhcCh
Confidence 38899999999888 6667654
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=82.69 E-value=14 Score=35.13 Aligned_cols=146 Identities=17% Similarity=0.133 Sum_probs=96.2
Q ss_pred HHHHHHhhcccccEEEeeCcccccCCh----------hHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHH
Q 022296 43 LEDIFESMGQFVDGLKFSGGSHSLMPK----------PFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (299)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs~l~p~----------~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~ 110 (299)
++..+++ =+|.+-+-..+|-+..+ +.+++-++.++++| +.|... +|.+...+++.+-+..+.+
T Consensus 80 i~~a~~~---g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~--~ed~~~~~~~~~~~~~~~~ 154 (382)
T 2ztj_A 80 AKVAVET---GVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFS--AEDTFRSEEQDLLAVYEAV 154 (382)
T ss_dssp HHHHHHT---TCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEE--ETTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHc---CCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEE--EEeCCCCCHHHHHHHHHHH
Confidence 4444543 35666666666643332 45788899999999 766543 1223344555677778888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
.+. .+.|=|.|-.--+.+.+-.++|+.+++. |. .-.+++-+.. |
T Consensus 155 ~~~-a~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~--~~~i~~H~Hn-------d------------------------- 199 (382)
T 2ztj_A 155 APY-VDRVGLADTVGVATPRQVYALVREVRRVVGP--RVDIEFHGHN-------D------------------------- 199 (382)
T ss_dssp GGG-CSEEEEEETTSCCCHHHHHHHHHHHHHHHTT--TSEEEEEEBC-------T-------------------------
T ss_pred HHh-cCEEEecCCCCCCCHHHHHHHHHHHHHhcCC--CCeEEEEeCC-------C-------------------------
Confidence 899 9999998888888888888999999884 11 2235553221 1
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHH
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA 232 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~ 232 (299)
.... +..+...++|||+.|=.=-.|+=...||...+.+-
T Consensus 200 -~GlA---vAN~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv 238 (382)
T 2ztj_A 200 -TGCA---IANAYEAIEAGATHVDTTILGIGERNGITPLGGFL 238 (382)
T ss_dssp -TSCH---HHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHH
T ss_pred -ccHH---HHHHHHHHHhCCCEEEEccccccccccchhHHHHH
Confidence 2233 56668899999996544445888899999887664
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=82.62 E-value=4.8 Score=37.70 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=68.2
Q ss_pred cCChhHHHHHHHHHHhCC-------cee--cCC--cHHHHHHHhCC--chHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 022296 66 LMPKPFIEEVVKRAHQHD-------VYV--STG--DWAEHLIRNGP--SAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 132 (299)
Q Consensus 66 l~p~~~l~eKI~l~~~~g-------V~v--~~G--tlfE~a~~qg~--~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r 132 (299)
...++.++.-++.+++++ |.+ +++ .|-|. .+++ +.+.++-+.+++.|++.|-.|. .+
T Consensus 112 ~~G~~~m~aa~e~a~~~~~~~~llaVtvLTS~s~~~l~~l--~~~~~~e~V~~lA~~a~~~G~dGvV~s~------~E-- 181 (303)
T 3ru6_A 112 SAGKIAIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSI--YRQKIEEAVINFSKISYENGLDGMVCSV------FE-- 181 (303)
T ss_dssp GGCHHHHHHHHHHHTTSSSCCEEEEECSCTTCCHHHHHHH--HSSCHHHHHHHHHHHHHHTTCSEEECCT------TT--
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHH--HcCCHHHHHHHHHHHHHHcCCCEEEECH------HH--
Confidence 445667777777777765 212 333 35443 2330 1234455677888988765532 22
Q ss_pred HHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcE
Q 022296 133 LRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADM 211 (299)
Q Consensus 133 ~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 211 (299)
...||.....+|. |-|=++.+ .+ ..+| ..|+..+...++||||+
T Consensus 182 ~~~IR~~~~~~fl~VTPGIr~q--G~---~~~D------------------------------Q~Rv~t~~~a~~aGAd~ 226 (303)
T 3ru6_A 182 SKKIKEHTSSNFLTLTPGIRPF--GE---TNDD------------------------------QKRVANLAMARENLSDY 226 (303)
T ss_dssp HHHHHHHSCTTSEEEECCCCTT--C-----------------------------------------CCSHHHHHHTTCSE
T ss_pred HHHHHHhCCCccEEECCCcCcc--cC---Cccc------------------------------ccccCCHHHHHHcCCCE
Confidence 3466665555553 34422221 11 1111 12355567789999997
Q ss_pred EEEeccccccCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 212 IMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 212 VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
+++ ||.||.+..- ...+++|.+.+.- |=||++.
T Consensus 227 iVv-Gr~I~~a~dp--~~a~~~i~~~i~~-~~~~~~~ 259 (303)
T 3ru6_A 227 IVV-GRPIYKNENP--RAVCEKILNKIHR-KNISEND 259 (303)
T ss_dssp EEE-CHHHHTSSCH--HHHHHHHHHHHC---------
T ss_pred EEE-ChHHhCCCCH--HHHHHHHHHHHHh-ccccccc
Confidence 655 7999998743 3445666655553 2334443
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=82.57 E-value=2.8 Score=38.75 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.- =++.-=+|+
T Consensus 30 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv------------------------- 84 (309)
T 3fkr_A 30 SQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTT------------------------- 84 (309)
T ss_dssp HHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEec-------------------------
Confidence 67788888889999999775333 4799999999999998830 011111122
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-----------c-----------------cccC---CCcc
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-----------D-----------------VCKH---ADSL 226 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-----------g-----------------i~d~---~G~~ 226 (299)
...+..+. |+.++..-++|||-|++=.- | ||+. .-++
T Consensus 85 ---------g~~~t~~a---i~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l 152 (309)
T 3fkr_A 85 ---------SHYSTQVC---AARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTAL 152 (309)
T ss_dssp ---------CCSSHHHH---HHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCC
T ss_pred ---------CCchHHHH---HHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC
Confidence 11125566 88889999999999998421 1 4553 2356
Q ss_pred cHHHHHHHHhccC-CCceEEecCC-chhHHHHHHHhCCCcccccCCCCch-hhhhhhcccCC
Q 022296 227 RADIIAKVIGRLG-LEKTMFEATN-PRTSEWFIRRYGPKVNLFVDHSQVM-DLECLRGRNLG 285 (299)
Q Consensus 227 r~d~i~~ii~~l~-~eklifEAP~-k~qQ~~fI~~fG~~VNLgI~~~eVi-~LE~LR~~~~G 285 (299)
..+.+.++.+.++ +-=+=.|++. -.+...+++..+.++....+-+|-+ -+++|..|--|
T Consensus 153 ~~~~~~~La~~~pnIvgiK~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~~~l~~~l~~G~~G 214 (309)
T 3fkr_A 153 SAPFLARMAREIEQVAYFXIETPGAANKLRELIRLGGDAIEGPWDGEEAITLLADLHAGATG 214 (309)
T ss_dssp CHHHHHHHHHHSTTEEEEEECSSSHHHHHHHHHHHHGGGCCEEEECGGGTTHHHHHHTTCCE
T ss_pred CHHHHHHHHhhCCCEEEEECCCcchHHHHHHHHHhcCCceeeecCCchHHHHHHHHHCCCcE
Confidence 6677777764443 2112236654 2344455555554332112333333 35677655544
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=82.24 E-value=5.3 Score=33.51 Aligned_cols=102 Identities=16% Similarity=0.285 Sum_probs=66.5
Q ss_pred hhHHHHHHHhhccc----ccEEEeeCcccccCChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022296 40 HNVLEDIFESMGQF----VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 40 ~~~l~DlLe~ag~y----ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
+..+.+.++...++ ++.+-|++|.-.+.| +.|.+.++.++++|+.+ .+ |++++ . ++.++.+.+
T Consensus 52 ~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~~-~~l~~l~~~~~~~~~~i~i~Tng~~~~-----~----~~~~~~l~~ 121 (245)
T 3c8f_A 52 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQA-EFVRDWFRACKKEGIHTCLDTNGFVRR-----Y----DPVIDELLE 121 (245)
T ss_dssp HHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGH-HHHHHHHHHHHTTTCCEEEEECCCCCC-----C----CHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCCeEEEECCCcCCCH-HHHHHHHHHHHHcCCcEEEEeCCCcCc-----C----HHHHHHHHH
Confidence 44555666655544 578999999988865 56899999999998844 34 64422 1 122333444
Q ss_pred cCCCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeee
Q 022296 113 VGFDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 113 lGF~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
. ++.|-||=-+.+ .+.+...+.|+.+++.|+.+.-.+.+
T Consensus 122 ~-~~~v~isld~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~i~~~~ 169 (245)
T 3c8f_A 122 V-TDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVV 169 (245)
T ss_dssp T-CSEEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred h-CCEEEEeCCCCCHHHhhhccCCCHHHHHHHHHHHHhcCCEEEEEEee
Confidence 4 678888754431 34467778999999999865444333
|
| >2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* | Back alignment and structure |
|---|
Probab=81.95 E-value=1.3 Score=39.45 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-ccCChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS-LEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-i~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+++ ++.++++||+.||+.... ...+.++..++.+.+++.|+++..
T Consensus 38 ~l~~-l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 84 (309)
T 2hk0_A 38 FGPY-IEKVAKLGFDIIEVAAHHINEYSDAELATIRKSAKDNGIILTA 84 (309)
T ss_dssp SHHH-HHHHHHTTCSEEEEEHHHHTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred cHHH-HHHHHHhCCCEEEeccCCccccchhhHHHHHHHHHHcCCeEEE
Confidence 7889 999999999999998542 233346777888999999999776
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=81.90 E-value=3.4 Score=38.00 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=97.1
Q ss_pred CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCC
Q 022296 82 HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNK 156 (299)
Q Consensus 82 ~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~ 156 (299)
.||.+..=|.|-.=-.=+.+.++++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+
T Consensus 18 ~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGv---- 92 (304)
T 3cpr_A 18 GTVGVAMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGD-RAKLIAGV---- 92 (304)
T ss_dssp CSEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTT-TSEEEEEC----
T ss_pred CceEEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEecC----
Confidence 577655545441000111236888899999999999977543 3489999999999999873 1 11101222
Q ss_pred CCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------
Q 022296 157 SDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD------------------- 217 (299)
Q Consensus 157 sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar------------------- 217 (299)
...+..+. |+.++..-++|||.|++=.-
T Consensus 93 ------------------------------g~~st~~a---i~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~ 139 (304)
T 3cpr_A 93 ------------------------------GTNNTRTS---VELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAA 139 (304)
T ss_dssp ------------------------------CCSCHHHH---HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred ------------------------------CCCCHHHH---HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 11125566 88999999999999998652
Q ss_pred ------ccccC---CC-cccHHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccC
Q 022296 218 ------DVCKH---AD-SLRADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNL 284 (299)
Q Consensus 218 ------gi~d~---~G-~~r~d~i~~ii~~l~~eklif--EA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~ 284 (299)
-||+. .| ++..+.+.++++ ..+|+- |+ ++-.+...+++.. +..+ ..-+|-+.+++|..|--
T Consensus 140 a~~lPiilYn~P~~tg~~l~~~~~~~La~---~pnIvgiKdssgd~~~~~~~~~~~--~f~v-~~G~d~~~l~~l~~G~~ 213 (304)
T 3cpr_A 140 ATEVPICLYDIPGRSGIPIESDTMRRLSE---LPTILAVXDAKGDLVAATSLIKET--GLAW-YSGDDPLNLVWLALGGS 213 (304)
T ss_dssp HCCSCEEEEECHHHHSSCCCHHHHHHHTT---STTEEEEEECSCCHHHHHHHHHHH--CCEE-EECSGGGHHHHHHTTCC
T ss_pred hcCCCEEEEeCccccCcCCCHHHHHHHHc---CCCEEEEecCCCCHHHHHHHHHhc--CEEE-EECcHHHHHHHHHCCCC
Confidence 14553 22 566777777753 345543 44 4555666666665 3333 33345556777776643
Q ss_pred C
Q 022296 285 G 285 (299)
Q Consensus 285 G 285 (299)
|
T Consensus 214 G 214 (304)
T 3cpr_A 214 G 214 (304)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=81.76 E-value=8.5 Score=35.55 Aligned_cols=144 Identities=10% Similarity=0.039 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~G~-~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+.++++++++-+-|.+.|=+.-.|- .|+.++|.++++.+.+.-= ++.-=+|+
T Consensus 28 ~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGv------------------------ 83 (311)
T 3h5d_A 28 DAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGV------------------------ 83 (311)
T ss_dssp THHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEEC------------------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC------------------------
Confidence 4788999999999999998865544 6999999999999988410 11101122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccC-cEEEEecc-------------------------ccccC----CCcc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGA-DMIMIDSD-------------------------DVCKH----ADSL 226 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA-~~VIiEar-------------------------gi~d~----~G~~ 226 (299)
...+..+. |+.++..-++|| |.|++=.- -||+. .-++
T Consensus 84 ----------g~~~t~~a---i~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l 150 (311)
T 3h5d_A 84 ----------GTNDTRDS---IEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVEL 150 (311)
T ss_dssp ----------CCSSHHHH---HHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCC
T ss_pred ----------CCcCHHHH---HHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCC
Confidence 11125566 899999999997 99988662 14653 2356
Q ss_pred cHHHHHHHHhccCCCce--EEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 227 RADIIAKVIGRLGLEKT--MFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 227 r~d~i~~ii~~l~~ekl--ifEAP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
..+.+.++.+ . .+| |=|+.+-.+...+++..++++.+.--. |-+-+++|..|--|
T Consensus 151 ~~~~~~~La~-~--pnIvgiKdssd~~~~~~~~~~~~~~f~v~~G~-d~~~l~~l~~Ga~G 207 (311)
T 3h5d_A 151 TPETMLRLAD-H--PNIIGVKECTSLANMAYLIEHKPEEFLIYTGE-DGDAFHAMNLGADG 207 (311)
T ss_dssp CHHHHHHHHT-S--TTEEEEEECSCHHHHHHHHHHCCSSCEEEECC-GGGHHHHHHHTCCE
T ss_pred CHHHHHHHhc-C--CCEEEEEeCCCHHHHHHHHHHcCCCEEEEECc-HHHHHHHHHcCCCE
Confidence 7777777764 3 344 224445566667777777776665333 33457777755433
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=81.63 E-value=7.7 Score=32.59 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=45.6
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
.+.+.+..++.- .|++ ++.+. + .+-++.+|++|+++.+|.. . .+-...+.++|.+.|
T Consensus 72 ~~~~~~~a~~~G---ad~i-v~~~~----~----~~~~~~~~~~g~~vi~g~~----------t-~~e~~~a~~~Gad~v 128 (205)
T 1wa3_A 72 SVEQCRKAVESG---AEFI-VSPHL----D----EEISQFCKEKGVFYMPGVM----------T-PTELVKAMKLGHTIL 128 (205)
T ss_dssp SHHHHHHHHHHT---CSEE-ECSSC----C----HHHHHHHHHHTCEEECEEC----------S-HHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHcC---CCEE-EcCCC----C----HHHHHHHHHcCCcEECCcC----------C-HHHHHHHHHcCCCEE
Confidence 344566666544 4555 66553 3 3567788999999999731 1 112456788999999
Q ss_pred EecCCcccCChhHHHHHHHHHHH
Q 022296 119 ELNVGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~ 141 (299)
-+.... ....+.++.+++
T Consensus 129 k~~~~~-----~~g~~~~~~l~~ 146 (205)
T 1wa3_A 129 KLFPGE-----VVGPQFVKAMKG 146 (205)
T ss_dssp EETTHH-----HHHHHHHHHHHT
T ss_pred EEcCcc-----ccCHHHHHHHHH
Confidence 875421 123456666665
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=81.61 E-value=3.3 Score=39.58 Aligned_cols=101 Identities=10% Similarity=-0.051 Sum_probs=64.9
Q ss_pred HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeec
Q 022296 79 AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMF 154 (299)
Q Consensus 79 ~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~ 154 (299)
.+-.||.+..=|.|-.--.=+.+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 58 ~~~~Gi~~alvTPF~~dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGv-- 135 (360)
T 4dpp_A 58 IKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNT-- 135 (360)
T ss_dssp HHTCCEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC--
T ss_pred cccCCeEEEEeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEec--
Confidence 3556776554443310001112368888999999999999884433 489999999999998873 0011001122
Q ss_pred CCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 155 NKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 155 ~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
...+..+. |+.++..-++|||.|++=.
T Consensus 136 --------------------------------g~~st~ea---i~la~~A~~~Gadavlvv~ 162 (360)
T 4dpp_A 136 --------------------------------GSNSTREA---IHATEQGFAVGMHAALHIN 162 (360)
T ss_dssp --------------------------------CCSSHHHH---HHHHHHHHHTTCSEEEEEC
T ss_pred --------------------------------CCCCHHHH---HHHHHHHHHcCCCEEEEcC
Confidence 11125566 8999999999999999865
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=81.53 E-value=5.7 Score=33.76 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--CCcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKA 146 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--G~~v 146 (299)
.++++.+.+.|.+.|.+......=|.+...++++.+++. |+.+
T Consensus 78 ~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v 122 (223)
T 1y0e_A 78 SKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEI 122 (223)
T ss_dssp HHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceE
Confidence 456788889999999987654332224556788888886 5554
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=81.40 E-value=25 Score=30.10 Aligned_cols=144 Identities=13% Similarity=0.162 Sum_probs=79.5
Q ss_pred HHHHHHhCCceecC-CcHHHHHHHhCCc--hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 022296 75 VVKRAHQHDVYVST-GDWAEHLIRNGPS--AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (299)
Q Consensus 75 KI~l~~~~gV~v~~-GtlfE~a~~qg~~--~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (299)
.++.. ++++.++. +.--|-. .+++ .+.+..+.+.+.|+++|++. +. ..|+.+++.- -+|=++
T Consensus 10 ~~~~~-~~~~~~~~~~~~~~p~--~~~~~~~~~~~a~~~~~~G~~~i~~~------~~----~~i~~i~~~~--~~p~i~ 74 (234)
T 1yxy_A 10 LMEQL-KGGIIVSCQALPGEPL--YSETGGIMPLMAKAAQEAGAVGIRAN------SV----RDIKEIQAIT--DLPIIG 74 (234)
T ss_dssp HHHHH-TTSCEEECCCCTTSTT--CCTTCCSHHHHHHHHHHHTCSEEEEE------SH----HHHHHHHTTC--CSCEEE
T ss_pred HHHHH-hCCEEEEeeCCCCCCC--cCCccchHHHHHHHHHHCCCcEeecC------CH----HHHHHHHHhC--CCCEEe
Confidence 33444 77776554 3111100 1344 67888999999999999985 12 3466666530 122123
Q ss_pred eecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHH
Q 022296 152 VMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADII 231 (299)
Q Consensus 152 vK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i 231 (299)
+-. .+.+ +. ..++.+ - .++++..+++||+.|.+.+.-..+.+|..-.+++
T Consensus 75 ~~~--~~~~---~~--~~~i~~--------------------~---~~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i 124 (234)
T 1yxy_A 75 IIK--KDYP---PQ--EPFITA--------------------T---MTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFI 124 (234)
T ss_dssp ECB--CCCT---TS--CCCBSC--------------------S---HHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHH
T ss_pred eEc--CCCC---cc--ccccCC--------------------h---HHHHHHHHHcCCCEEEEcccccCCCCCccHHHHH
Confidence 200 0000 10 001111 1 5566889999999999987643333333346778
Q ss_pred HHHHhccCCCceEEecCCchhHHHHHHHhCCCc
Q 022296 232 AKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKV 264 (299)
Q Consensus 232 ~~ii~~l~~eklifEAP~k~qQ~~fI~~fG~~V 264 (299)
+.+-+..+--.++.+...... ..-....|.+.
T Consensus 125 ~~i~~~~~~~~v~~~~~t~~e-a~~a~~~Gad~ 156 (234)
T 1yxy_A 125 RQVKEKYPNQLLMADISTFDE-GLVAHQAGIDF 156 (234)
T ss_dssp HHHHHHCTTCEEEEECSSHHH-HHHHHHTTCSE
T ss_pred HHHHHhCCCCeEEEeCCCHHH-HHHHHHcCCCE
Confidence 877766653456667765544 44445678774
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=81.39 E-value=5.6 Score=36.87 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~ 170 (299)
-+-.+..-+.|..+|-|-|+.. -+|.++.++-|+.+++.+-. +.|-++- ..|. .
T Consensus 93 ~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~--~~~~i~a-------Rtda----~ 159 (290)
T 2hjp_A 93 HYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARAD--RDFVVIA-------RVEA----L 159 (290)
T ss_dssp HHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSS--TTSEEEE-------EECT----T
T ss_pred HHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhccc--CCcEEEE-------eehH----h
Confidence 3334445568999999999873 36777777788877776432 3344420 0110 0
Q ss_pred ccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 171 VARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+ ++ ...+++ |++++...+||||.|.+|++ -...+++.+|.+.++
T Consensus 160 ~------------a~---~g~~~a---i~Ra~ay~eAGAd~i~~e~~-------~~~~~~~~~i~~~~~ 203 (290)
T 2hjp_A 160 I------------AG---LGQQEA---VRRGQAYEEAGADAILIHSR-------QKTPDEILAFVKSWP 203 (290)
T ss_dssp T------------TT---CCHHHH---HHHHHHHHHTTCSEEEECCC-------CSSSHHHHHHHHHCC
T ss_pred h------------cc---ccHHHH---HHHHHHHHHcCCcEEEeCCC-------CCCHHHHHHHHHHcC
Confidence 0 00 015777 99999999999999999984 122467788888777
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=81.11 E-value=21 Score=33.85 Aligned_cols=140 Identities=9% Similarity=0.068 Sum_probs=89.3
Q ss_pred HHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022296 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (299)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (299)
+-+.|..+| ||.+=.||+.+ .| ...+-++.+.+.+..+..-+| .+. ..++ ++.+.+.|.+.|-|..
T Consensus 30 ia~~L~~~G--v~~IE~g~p~~--~~--~~~~~~~~i~~~~~~~~v~~~-----~r~--~~~d-i~~a~~~g~~~v~i~~ 95 (382)
T 2ztj_A 30 IAKALDEFG--IEYIEVTTPVA--SP--QSRKDAEVLASLGLKAKVVTH-----IQC--RLDA-AKVAVETGVQGIDLLF 95 (382)
T ss_dssp HHHHHHHHT--CSEEEECCTTS--CH--HHHHHHHHHHTSCCSSEEEEE-----EES--CHHH-HHHHHHTTCSEEEEEE
T ss_pred HHHHHHHcC--cCEEEEcCCcC--CH--HHHHHHHHHHhcCCCcEEEEE-----ccc--Chhh-HHHHHHcCCCEEEEEe
Confidence 445566666 88888888654 23 355677777777654222223 122 2333 6778888999999876
Q ss_pred Cccc-------CCh----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccch
Q 022296 123 GSLE-------IPE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEV 191 (299)
Q Consensus 123 Gti~-------i~~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (299)
.+-+ .+. +.-.+.|+.+++.|-....+|...+. . ..++
T Consensus 96 ~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~-----~--------------------------~~~~ 144 (382)
T 2ztj_A 96 GTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDT-----F--------------------------RSEE 144 (382)
T ss_dssp CC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTT-----T--------------------------TSCH
T ss_pred ccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeC-----C--------------------------CCCH
Confidence 5543 232 44568899999998322234444210 1 1226
Q ss_pred hhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHh
Q 022296 192 GVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 192 ~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~ 236 (299)
+.+ ++.++...++ |+.| .|+|..|-..+..+.++++
T Consensus 145 ~~~---~~~~~~~~~~-a~~i-----~l~DT~G~~~P~~~~~lv~ 180 (382)
T 2ztj_A 145 QDL---LAVYEAVAPY-VDRV-----GLADTVGVATPRQVYALVR 180 (382)
T ss_dssp HHH---HHHHHHHGGG-CSEE-----EEEETTSCCCHHHHHHHHH
T ss_pred HHH---HHHHHHHHHh-cCEE-----EecCCCCCCCHHHHHHHHH
Confidence 777 8888999999 9865 4788888888888888876
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=81.05 E-value=3.3 Score=37.76 Aligned_cols=88 Identities=11% Similarity=0.191 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc-cceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA-KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v-~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
+.++-+.+++.|.+.+-+|. +..+.||.....+|.. -|=++.+ ..+ .+|
T Consensus 164 V~~~A~~a~~aG~~GvV~sa--------~e~~~iR~~~g~~fl~VtPGIr~q--g~~---~~d----------------- 213 (255)
T 3ldv_A 164 VLRLATLTKNAGLDGVVCSA--------QEASLLKQHLGREFKLVTPGIRPA--GSE---QGD----------------- 213 (255)
T ss_dssp HHHHHHHHHHTTCSEEECCH--------HHHHHHHHHHCTTSEEEEECCCCT--TST---TSS-----------------
T ss_pred HHHHHHHHHHcCCCEEEECH--------HHHHHHHHhcCCCcEEEeCCcccC--cCC---ccc-----------------
Confidence 44566667788998888772 2467888877777763 3644432 111 122
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHh
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~ 236 (299)
..|+-..+..++||||+ ||=+|.||.+..- ...+++|.+
T Consensus 214 -------------Q~Rv~t~~~a~~aGad~-iVvGr~I~~a~dp--~~a~~~i~~ 252 (255)
T 3ldv_A 214 -------------QRRIMTPAQAIASGSDY-LVIGRPITQAAHP--EVVLEEINS 252 (255)
T ss_dssp -------------CSSSCCHHHHHHTTCSE-EEECHHHHTCSCH--HHHHHHHHH
T ss_pred -------------eeccCCHHHHHHcCCCE-EEECHHHhCCCCH--HHHHHHHHH
Confidence 12355567788999996 5568999998743 334444443
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=81.00 E-value=3.3 Score=36.84 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=29.0
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCce----ecCCcHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VSTGDWAE 93 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~----v~~GtlfE 93 (299)
+++.+.+.-+++|-+- .-+ +.+ .+.+-++.+|++|+. +.|+|-.|
T Consensus 72 ~i~~~~~aGAd~itvh---~Ea--~~~--~~~~~i~~i~~~G~k~gv~lnp~tp~~ 120 (231)
T 3ctl_A 72 YIAQLARAGADFITLH---PET--ING--QAFRLIDEIRRHDMKVGLILNPETPVE 120 (231)
T ss_dssp THHHHHHHTCSEEEEC---GGG--CTT--THHHHHHHHHHTTCEEEEEECTTCCGG
T ss_pred HHHHHHHcCCCEEEEC---ccc--CCc--cHHHHHHHHHHcCCeEEEEEECCCcHH
Confidence 6666766666665443 211 012 478999999999987 56777654
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=80.85 E-value=18 Score=33.65 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=18.3
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
.++. ++.++..-++|+|+|-+=.
T Consensus 228 ~~~~---~~la~~L~~~Gvd~i~vs~ 250 (340)
T 3gr7_A 228 AKDY---VPYAKRMKEQGVDLVDVSS 250 (340)
T ss_dssp GGGH---HHHHHHHHHTTCCEEEEEC
T ss_pred HHHH---HHHHHHHHHcCCCEEEEec
Confidence 5566 7778888899999998843
|
| >1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A* | Back alignment and structure |
|---|
Probab=80.82 E-value=4.7 Score=37.76 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=36.9
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcc-c--CC----hhHHHHHHHHHHHcCCcccc
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGSL-E--IP----EETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti-~--i~----~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+-.+++.++.++++||++||+++.-+ . .+ .++..++-+.+++.|+++..
T Consensus 31 ~~~~~~e~l~~aa~~G~~~VEl~~~~l~p~~~~~~~~~~~~~~l~~~l~~~GL~i~~ 87 (393)
T 1xim_A 31 TALDPVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDETGLIVPM 87 (393)
T ss_dssp CCCCHHHHHHHHHHHTCSEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHHHTCBCCE
T ss_pred CCCCHHHHHHHHHHhCCCEEEeecccCCCccccccccHHHHHHHHHHHHHhCCEEEE
Confidence 334788999999999999999983221 1 12 45677788888999998653
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=80.64 E-value=26 Score=30.07 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=91.7
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCC----hhHHHHHHHHHHhCCceec--CC-cHH--
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVS--TG-DWA-- 92 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p----~~~l~eKI~l~~~~gV~v~--~G-tlf-- 92 (299)
+..|++.++..+. .+...+.+++.+..|=++ ..+.|-+.... ++.+++.-+++.+..+.-. .| .+.
T Consensus 29 ~~~Gv~~~v~~~~----~~~~~~~~~~l~~~~~~i-~~~~G~hP~~~~~~~~~~~~~l~~~~~~~~~~~iGE~Gld~~~~ 103 (264)
T 1xwy_A 29 FDAGVNGLLITGT----NLRESQQAQKLARQYSSC-WSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRN 103 (264)
T ss_dssp HHTTCCEEEECCC----SHHHHHHHHHHHHHSTTE-EEEECCCGGGGGGCCHHHHHHHHHHHTSTTEEEEEEEEEETTTC
T ss_pred HHCCCCEEEEeCC----CHHHHHHHHHHHHhCCCE-EEEEEECCcccccCCHHHHHHHHHHhcCCCeEEEEEeccCCCCC
Confidence 4579999999887 456788888888887664 34555443222 2335555555543333211 02 110
Q ss_pred -H-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCCcccccccc
Q 022296 93 -E-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGA 169 (299)
Q Consensus 93 -E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~-gvK~~~sevg~~~d~~~~~ 169 (299)
+ ...++. .|...++.|+++|...+==+.. ..+ ++++.+++.+.. .. ++-...+
T Consensus 104 ~~~~~~q~~--~f~~~l~~a~~~~lpv~iH~~~----a~~---~~~~il~~~~~~---~~~~v~H~~~------------ 159 (264)
T 1xwy_A 104 FSTPEEQER--AFVAQLRIAADLNMPVFMHCRD----AHE---RFMTLLEPWLDK---LPGAVLHCFT------------ 159 (264)
T ss_dssp SSCHHHHHH--HHHHHHHHHHHHTCCEEEEEES----CHH---HHHHHHGGGGGG---SSCEEECSCC------------
T ss_pred CCcHHHHHH--HHHHHHHHHHHhCCcEEEEcCC----chH---HHHHHHHhcCCC---CCcEEEEccC------------
Confidence 1 112222 5888999999999887633322 122 345555553321 11 1111000
Q ss_pred cccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCC
Q 022296 170 YVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 249 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~ 249 (299)
.+ .+.+++.++.|.+.=+ .|.... .-+.+.+.++++.+|++|||||..-
T Consensus 160 -----------------g~---------~~~~~~~~~~g~yi~~---~g~~~~--~~~~~~l~~~~~~~~~drll~eTD~ 208 (264)
T 1xwy_A 160 -----------------GT---------REEMQACVAHGIYIGI---TGWVCD--ERRGLELRELLPLIPAEKLLIETDA 208 (264)
T ss_dssp -----------------CC---------HHHHHHHHHTTCEEEE---CGGGGC--TTTSHHHHHHGGGSCGGGEEECCCT
T ss_pred -----------------CC---------HHHHHHHHHCCeEEEE---CccccC--CcCcHHHHHHHHhCCHHHEEEecCC
Confidence 00 2334666777754332 243220 0124567788999999999999876
Q ss_pred c
Q 022296 250 P 250 (299)
Q Consensus 250 k 250 (299)
|
T Consensus 209 P 209 (264)
T 1xwy_A 209 P 209 (264)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=80.38 E-value=5.6 Score=36.86 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=45.8
Q ss_pred HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe------cCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 79 AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL------NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 79 ~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI------SdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
..++|+..|.. .| ..++.++.+|++|+++|-+ +.|..+ .+.-++++++++++||+|.-.|..
T Consensus 15 ~e~~g~~~~~~--------~G--~~~~~~~ilk~~G~n~vRlri~v~P~~g~~d--~~~~~~~~~~ak~~Gl~v~ld~hy 82 (334)
T 1fob_A 15 LEDEGYSYKNL--------NG--QTQALETILADAGINSIRQRVWVNPSDGSYD--LDYNLELAKRVKAAGMSLYLDLHL 82 (334)
T ss_dssp HHHTTCCCBCT--------TS--CBCCHHHHHHHHTCCEEEEEECSCCTTCTTC--HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHcCCEEECC--------CC--CCchHHHHHHHcCCCEEEEEEEECCCCCccC--HHHHHHHHHHHHHCCCEEEEEecc
Confidence 35577766541 12 2345688999999999999 355443 567778999999999999988866
Q ss_pred e
Q 022296 153 M 153 (299)
Q Consensus 153 K 153 (299)
.
T Consensus 83 s 83 (334)
T 1fob_A 83 S 83 (334)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=80.35 E-value=10 Score=34.32 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=68.6
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCc----HHHHHHHh--CC----------chHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHLIRN--GP----------SAFK 104 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~Gt----lfE~a~~q--g~----------~~~~ 104 (299)
..+.+++.-+++|| +|+|+..+.+++.+++.+...++. +++++--| -+|.|+.. |. +.++
T Consensus 30 ~a~~~v~~GAdiID---Ig~g~~~v~~~ee~~rvv~~i~~~~~~pisIDT~~~~v~~aAl~a~~Ga~iINdvs~~~d~~~ 106 (262)
T 1f6y_A 30 WARRQEEGGARALD---LNVGPAVQDKVSAMEWLVEVTQEVSNLTLCLDSTNIKAIEAGLKKCKNRAMINSTNAEREKVE 106 (262)
T ss_dssp HHHHHHHHTCSEEE---EBCC----CHHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHCSSCEEEEEECSCHHHHH
T ss_pred HHHHHHHCCCcEEE---ECCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHhhCCCCCEEEECCCCcccHH
Confidence 34555665555555 588998899999999999999987 88888765 48888886 53 1244
Q ss_pred HHHHHHHHcCCCEEEecCCcccCC--hhHH----HHHHHHHHHcCCc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIP--EETL----LRYVRLVKSAGLK 145 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~--~~~r----~~lI~~~~~~G~~ 145 (299)
+.++.++++|...|=....--.+| -+++ .+.++++.+.|+.
T Consensus 107 ~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~ 153 (262)
T 1f6y_A 107 KLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLP 153 (262)
T ss_dssp HHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 789999999998888764211122 2333 5677788887764
|
| >3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=80.33 E-value=1.4 Score=39.47 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+++.++.++++||++||+....- .....+..++-+.+++.|+++.+
T Consensus 30 ~~~~~l~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~l~~~GL~v~~ 77 (303)
T 3l23_A 30 DVAANLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDAGLKIIS 77 (303)
T ss_dssp CHHHHHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCCEEEeccccCcccCCCCHHHHHHHHHHcCCeEEE
Confidence 699999999999999999985211 02233456777888999999754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 299 | ||||
| d1qwga_ | 251 | c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase | 1e-70 | |
| d1u83a_ | 249 | c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase | 9e-63 |
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 216 bits (552), Expect = 1e-70
Identities = 49/269 (18%), Positives = 102/269 (37%), Gaps = 45/269 (16%)
Query: 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRA 79
+ + G+T + +ED + G ++D +KF G+ +++ + ++E +
Sbjct: 9 EDFQRGLTVVLDKGLPPKF----VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYY 64
Query: 80 HQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 138
+ V G E+ G F E++ +C+++GF+ +E++ GS +I E ++
Sbjct: 65 KDWGIKVYPGGTLFEYAYSKGK--FDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKR 122
Query: 139 VKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKS 198
K G + D D
Sbjct: 123 AKDNGFMVLTEVGKKMPDKDKQLTIDDRI------------------------------- 151
Query: 199 RRAERCLEAGADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEATNPRT 252
+ L+AGAD ++I+ + + ++ + + + + + K +FEA
Sbjct: 152 KLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQ 211
Query: 253 SEWFIRRYGPKVNLF-VDHSQVMDLECLR 280
FI ++G VNL + +V+ LE LR
Sbjct: 212 QVAFILKFGSSVNLANIAFDEVISLETLR 240
|
| >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Bacillus subtilis [TaxId: 1423]
Score = 196 bits (500), Expect = 9e-63
Identities = 53/274 (19%), Positives = 102/274 (37%), Gaps = 50/274 (18%)
Query: 16 DRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75
R KPR G + + Y L +D ++D +KF G+ L +EE
Sbjct: 8 VRTNKPRETGQSILIDNGYPLQF----FKDAIAGASDYIDFVKFGWGTSLLTKD--LEEK 61
Query: 76 VKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL 133
+ +HD+ G + +++ + E+ C G + IE++ G+L + +
Sbjct: 62 ISTLKEHDITFFFGGTLFEKYVSQKK---VNEFHRYCTYFGCEYIEISNGTLPMTNKEKA 118
Query: 134 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGV 193
Y+ + + A +A S + L
Sbjct: 119 AYIADFS---------------DEFLVLSEVGSKDAELASRQSSEEWL------------ 151
Query: 194 GINKSRRAERCLEAGADMIMIDSDD-----VCKHADSLRADIIAKVIGR-LGLEKTMFEA 247
+EAGA+ ++ ++ + +C + +R I+ +I + + + +FEA
Sbjct: 152 -----EYIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEA 206
Query: 248 TNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLR 280
N + FI++ GP VNL + + LE LR
Sbjct: 207 PNKTLQQGFIQKIGPNVNLANIPFHDAIALETLR 240
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 299 | |||
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 100.0 | |
| d1u83a_ | 249 | (2r)-phospho-3-sulfolactate synthase ComA {Bacillu | 100.0 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 96.97 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 95.81 | |
| d1yx1a1 | 250 | Hypothetical protein PA2260 {Pseudomonas aeruginos | 94.8 | |
| d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella t | 94.22 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 94.2 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 93.55 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 93.2 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 92.79 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 92.47 | |
| d1qtwa_ | 285 | Endonuclease IV {Escherichia coli [TaxId: 562]} | 91.52 | |
| d1dqwa_ | 267 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 91.11 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 90.76 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 90.51 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 90.51 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 89.1 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 88.69 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 88.62 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 88.61 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 88.29 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 87.82 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 87.35 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 87.29 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 87.11 | |
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 86.09 | |
| d1hjsa_ | 332 | Beta-1,4-galactanase {Thielavia heterothallica, ak | 86.08 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 85.83 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 85.62 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 85.57 | |
| d2g0wa1 | 275 | Hypothetical protein Lmo2234 {Listeria monocytogen | 85.34 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 85.18 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 84.8 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 84.49 | |
| d1k77a_ | 260 | Hypothetical protein YgbM (EC1530) {Escherichia co | 84.39 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 84.16 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 83.62 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 83.58 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 83.46 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 83.27 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 83.22 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 82.91 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 82.32 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 82.28 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 82.01 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 81.92 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 81.64 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 81.64 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 81.34 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 80.5 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 80.35 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 80.35 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 80.18 |
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.6e-87 Score=613.94 Aligned_cols=240 Identities=21% Similarity=0.393 Sum_probs=224.0
Q ss_pred ccCCCCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC
Q 022296 9 KSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST 88 (299)
Q Consensus 9 ~~f~~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~ 88 (299)
+.|.-+. |||++|||||+|||+ |+++++|+|++||+|||++||||||++|||++.|++||++||+|||+|||
T Consensus 2 ~~~~fl~----~~~~~GlTmv~DkGl----gl~~leD~Le~ag~yID~~K~g~Gt~~l~p~~~l~eKI~l~~~~~V~v~~ 73 (251)
T d1qwga_ 2 KAFEFLY----EDFQRGLTVVLDKGL----PPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYP 73 (251)
T ss_dssp CTTGGGC----CCCCCCCEEEEESSC----CHHHHHHHHHHHGGGCSEEEECTTGGGGSCHHHHHHHHHHHHTTTCEEEE
T ss_pred chhhhhc----CCccCCcEEEeeCCC----CHHHHHHHHHhhhhheeEEEecCceeeecCHHHHHHHHHHHHHcCCeEeC
Confidence 4454443 999999999999999 78899999999999999999999999999999999999999999999999
Q ss_pred C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 022296 89 G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (299)
Q Consensus 89 G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~ 167 (299)
| ||||+|+.|| ++++|+++|++|||++|||||||++||+++|+++|++++++||+|+||+|+|++.++
T Consensus 74 GGtlfE~a~~qg--~~~~y~~~~~~lGf~~iEiSdg~~~i~~~~~~~~I~~~~~~G~~V~~EvG~K~~~~~--------- 142 (251)
T d1qwga_ 74 GGTLFEYAYSKG--KFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKD--------- 142 (251)
T ss_dssp CHHHHHHHHHTT--CHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHH---------
T ss_pred CcHHHHHHHHcC--CHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCEEeecccCCCCCCc---------
Confidence 7 7999999999 999999999999999999999999999999999999999999999999999865321
Q ss_pred cccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc------ccccCCCcccHHHHHHHHhccCCC
Q 022296 168 GAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar------gi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
..++++++ |+++++||+||||+|||||| |||+++|++|++++++|++++|++
T Consensus 143 -------------------~~~~~~~~---i~~~~~~LeaGA~~ViiEarEsg~~~Gi~~~~g~~r~~~i~~i~~~l~~~ 200 (251)
T d1qwga_ 143 -------------------KQLTIDDR---IKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDIN 200 (251)
T ss_dssp -------------------TTCCHHHH---HHHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGG
T ss_pred -------------------cccCHHHH---HHHHHHHHHCCCceeEeehhhcCCccceecCCCChhHHHHHHHHHhCCcc
Confidence 01347888 99999999999999999987 799999999999999999999999
Q ss_pred ceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCCccc
Q 022296 242 KTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSHR 289 (299)
Q Consensus 242 klifEAP~k~qQ~~fI~~fG~~VNLg-I~~~eVi~LE~LR~~~~G~~~~ 289 (299)
|+|||||+|+||+|||++|||||||| |+|+||++|||||+|++|.+..
T Consensus 201 kiifEAP~k~~q~w~I~~fGp~VNL~NI~~~~vi~LE~LR~GLrgdT~g 249 (251)
T d1qwga_ 201 KVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLRRGLRGDTFG 249 (251)
T ss_dssp GEEEECCSHHHHHHHHHHHCTTCCEEEEEGGGHHHHHHHHHTCSGGGTT
T ss_pred cEEEECCChhHHHHHHHHhCCCcccccCCHHHHhHHHHHhcCCCccccc
Confidence 99999999999999999999999999 9999999999999888875543
|
| >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=6.5e-86 Score=606.25 Aligned_cols=236 Identities=21% Similarity=0.346 Sum_probs=207.6
Q ss_pred CCCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-c
Q 022296 12 DEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-D 90 (299)
Q Consensus 12 ~~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-t 90 (299)
+++|+|++|||++|+|||+|||| |+++++|+|++||+|||++||||||++++| .|++||++||+|||+||+| |
T Consensus 4 l~lp~R~~KPR~~GlT~v~D~Gl----~l~~leD~Le~~g~yID~vK~g~Gts~l~~--~L~eKI~l~~~~~V~v~~GGt 77 (249)
T d1u83a_ 4 LELPVRTNKPRETGQSILIDNGY----PLQFFKDAIAGASDYIDFVKFGWGTSLLTK--DLEEKISTLKEHDITFFFGGT 77 (249)
T ss_dssp CCCCCCCCSSCSSSCEEEEESSC----CHHHHHHHHHHHGGGCCEEEECTTGGGGCT--THHHHHHHHHHTTCEEEECHH
T ss_pred CCCCCCCCCCcccCceEEecCCC----CHHHHHHHHHhhhhheeEEEecCceeccCH--HHHHHHHHHHHcCCeEeCCCH
Confidence 58999999999999999999999 777999999999999999999999999999 5999999999999999997 7
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 022296 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (299)
Q Consensus 91 lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~ 170 (299)
|||+|+.|| ++++|+++|++|||++|||||||++||+++|+++|+++++ ++.|++|+|+|++..+.
T Consensus 78 lfE~a~~~~--~~~~y~~~~~~lGf~~iEiSdg~i~i~~~~~~~~I~~~~~-~~~V~sEvG~K~~~~~~----------- 143 (249)
T d1u83a_ 78 LFEKYVSQK--KVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSD-EFLVLSEVGSKDAELAS----------- 143 (249)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTT-TSEEEEECSCCC----------------
T ss_pred HHHHHHHcC--CHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHh-cCeeccccCCcCccccC-----------
Confidence 999999999 9999999999999999999999999999999999999998 66899999998653210
Q ss_pred ccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-----ccccCCCcccHHHHHHHHhc-cCCCceE
Q 022296 171 VARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGR-LGLEKTM 244 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i~~ii~~-l~~ekli 244 (299)
..+++++ |+++++||+||||+||+||| |||+.+|++|++++++|+++ ++++|||
T Consensus 144 -----------------~~~~~~~---i~~~~~~LeaGA~~ViiEarEsg~~Gi~~~~g~~r~~~i~~ii~~~~~~~~ii 203 (249)
T d1u83a_ 144 -----------------RQSSEEW---LEYIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLI 203 (249)
T ss_dssp ------------------CCSTHH---HHHHHHHHHHTEEEEEEC------------------CCHHHHHTTTSCGGGEE
T ss_pred -----------------CCCHHHH---HHHHHHHHHCCCceEEeehhccCCCCCcCCCcchhHHHHHHHHHhcCChhhEE
Confidence 1236677 99999999999999999998 79999999999999999985 9999999
Q ss_pred EecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCCc
Q 022296 245 FEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKS 287 (299)
Q Consensus 245 fEAP~k~qQ~~fI~~fG~~VNLg-I~~~eVi~LE~LR~~~~G~~ 287 (299)
||||+|+||+|||++|||||||| |+|+||++|||||+|+.|.+
T Consensus 204 fEAp~k~~q~~~I~~~G~~VNL~NI~~~~vi~LE~lR~GLRgDt 247 (249)
T d1u83a_ 204 FEAPNKTLQQGFIQKIGPNVNLANIPFHDAIALETLRLGLRSDT 247 (249)
T ss_dssp EECCSHHHHHHHHHHHCTTCCEEEEEGGGHHHHHHHHTTCSGGG
T ss_pred EeCCCHHHHHHHHHHhCCCcccccCCHHHHHHHHHHhccccccc
Confidence 99999999999999999999999 99999999999999999865
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=96.97 E-value=0.0035 Score=54.12 Aligned_cols=168 Identities=11% Similarity=0.094 Sum_probs=116.5
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch
Q 022296 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA 102 (299)
Q Consensus 23 ~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~ 102 (299)
...+..+.+.+.. ..+++....-..+|.+......+ .-+.+++-++.++++|+.+..+ ++.+-...++.
T Consensus 81 ~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~~~~~a~~~g~~~~~~--~~~~~~~~~~~ 149 (289)
T d1nvma2 81 HAQIATLLLPGIG------SVHDLKNAYQAGARVVRVATHCT---EADVSKQHIEYARNLGMDTVGF--LMMSHMIPAEK 149 (289)
T ss_dssp SSEEEEEECBTTB------CHHHHHHHHHHTCCEEEEEEETT---CGGGGHHHHHHHHHHTCEEEEE--EESTTSSCHHH
T ss_pred hhHHHHHHhhhhh------hHHHHHHHHHhcccceEEEeehh---hhhhHhHHHHHHHHhCCceeeE--eeeccccCchh
Confidence 3467777777762 33455555555788877765444 4445888999999999866542 11111223346
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
+.+..+.+.++|++.|-+.|-.-.+.+++-.++++.+++.. .....+|..+.. |
T Consensus 150 ~~~~~~~~~~~g~~~I~l~DT~G~~~P~~v~~~v~~l~~~~-~~~~~i~~H~Hn-------~------------------ 203 (289)
T d1nvma2 150 LAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVL-KPETQVGMHAHH-------N------------------ 203 (289)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHS-CTTSEEEEECBC-------T------------------
T ss_pred hhHHHHhhccccceeeeecchhhcccchhHHHHHHHHHHHh-cccccceeeech-------H------------------
Confidence 77889999999999999999999999999999999998852 111234553221 1
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccCC
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
.... +..+...++|||++ ||+- |+=...||.-++.+-..+.+.|.
T Consensus 204 --------~g~a---~an~l~A~~~G~~~--id~si~GlG~~~GN~~tE~lv~~l~~~g~ 250 (289)
T d1nvma2 204 --------LSLG---VANSIVAVEEGCDR--VDASLAGMGAGAGNAPLEVFIAVAERLGW 250 (289)
T ss_dssp --------TSCH---HHHHHHHHHTTCCE--EEEBGGGCSSTTCBCBHHHHHHHHHHHTC
T ss_pred --------HHHH---HHHHHHHHHhCCcE--eeccccccCCCCCCccHHHHHHHHHhcCC
Confidence 2233 56667899999996 5887 88889999998877666665553
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=95.81 E-value=0.053 Score=46.68 Aligned_cols=146 Identities=11% Similarity=0.090 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+.++++++++.+.|++.+=+.-.+ ..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 24 ~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv------------------------ 79 (292)
T d1xkya1 24 AKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGT------------------------ 79 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC------------------------
T ss_pred HHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEec------------------------
Confidence 368889999999999999885433 479999999999999883 0011111122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~----~G~~r 227 (299)
...+..+. |++++..-++||+.|++=.- -||+. .-.+.
T Consensus 80 ----------~~~s~~~~---i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~ 146 (292)
T d1xkya1 80 ----------GSNNTHAS---IDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQIS 146 (292)
T ss_dssp ----------CCSCHHHH---HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCC
T ss_pred ----------CcccHHHH---HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccC
Confidence 11235667 99999999999999999531 15653 23577
Q ss_pred HHHHHHHHhccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~-~eklifEAP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+.+.++.+ .+ +--+-+++++..+...+++..++++.+.... +-.-+++++.|.-|
T Consensus 147 ~~~~~~l~~-~p~v~giK~~~~~~~~~~~~~~~~~~~~~v~~G~-~~~~~~~~~~G~~G 203 (292)
T d1xkya1 147 VDTVVRLSE-IENIVAIKDAGGDVLTMTEIIEKTADDFAVYSGD-DGLTLPAMAVGAKG 203 (292)
T ss_dssp HHHHHHHHT-STTEEEEEECSSCHHHHHHHHHHSCTTCEEEESS-GGGHHHHHHTTCCE
T ss_pred HHHHhhhcc-CCCEEEEeccccchhhhheeeeecCCCCEEEECC-ccccchHHHcCCCc
Confidence 888888765 43 4455567888888888889999988876444 34456777765544
|
| >d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: KguE-like domain: Hypothetical protein PA2260 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.80 E-value=0.089 Score=43.96 Aligned_cols=136 Identities=12% Similarity=0.069 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
...++++.++++||+.|||.... .-++++..++-+.+++.|+++..-....+... .+
T Consensus 20 ~~~~~l~~~a~~G~dgIEi~~~~-~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~~-----~~----------------- 76 (250)
T d1yx1a1 20 GQASFLPLLAMAGAQRVELREEL-FAGPPDTEALTAAIQLQGLECVFSSPLELWRE-----DG----------------- 76 (250)
T ss_dssp CGGGGHHHHHHHTCSEEEEEGGG-CSSCCCHHHHHHHHHHTTCEEEEEEEEEEECT-----TS-----------------
T ss_pred CHHHHHHHHHHhCCCEEEEeccc-CCCcchHHHHHHHHHHcCCEEEEecccccccC-----ch-----------------
Confidence 46678999999999999997433 33455667888999999998754222211000 00
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecC------CchhHHH
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT------NPRTSEW 255 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP------~k~qQ~~ 255 (299)
-..+.+ .+.++..=+.||..|.+-+-.. .... +-..+...++..|+ +|.+|.= ...+-..
T Consensus 77 -------~~~~~~---~~~i~~A~~LG~~~v~~~~g~~-~~~~--~l~~l~~~a~~~Gv-~l~iE~h~~~~~~~~~~~~~ 142 (250)
T d1yx1a1 77 -------QLNPEL---EPTLRRAEACGAGWLKVSLGLL-PEQP--DLAALGRRLARHGL-QLLVENDQTPQGGRIEVLER 142 (250)
T ss_dssp -------SBCTTH---HHHHHHHHHTTCSEEEEEEECC-CSSC--CHHHHHHHHTTSSC-EEEEECCSSHHHHCHHHHHH
T ss_pred -------hhHHHH---HHHHHHHHHhCCCEEEEeeccc-chhH--HHHHHHHHHHHcCC-EEEEEeCCCcccCCHHHHHH
Confidence 002334 2223344467999999977432 2222 34557778888887 7889962 2222223
Q ss_pred H---HHHhCCCcccccCCCCch
Q 022296 256 F---IRRYGPKVNLFVDHSQVM 274 (299)
Q Consensus 256 f---I~~fG~~VNLgI~~~eVi 274 (299)
+ +..-.|+|.+-.|+....
T Consensus 143 ~~~~~~~~~p~vg~~~D~~h~~ 164 (250)
T d1yx1a1 143 FFRLAERQQLDLAMTFDIGNWR 164 (250)
T ss_dssp HHHHHHHTTCSEEEEEETTGGG
T ss_pred HHHHhhccCCccccccchHHHH
Confidence 3 333446676555555543
|
| >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Putative cytoplasmic protein STM4435 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.22 E-value=0.2 Score=41.82 Aligned_cols=137 Identities=12% Similarity=0.208 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc--CCh-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLE--IPE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~--i~~-~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.+++.++.|+++||+.||+...... ++. ....++-+.+++.|+++.. ++.-.+.. + +..
T Consensus 19 ~lee~l~~a~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~~-l~~~~~~~------~-----------~~~ 80 (271)
T d2q02a1 19 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVT-INAVYPFN------Q-----------LTE 80 (271)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEE-EEEETTTT------S-----------CCH
T ss_pred CHHHHHHHHHHhCCCEEEEecCcccccccccCCHHHHHHHHHHcCCcEEE-eecccccC------C-----------CCH
Confidence 6899999999999999999754332 222 2234555667888998654 33211111 0 000
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCc--ccHHHH---HHHHhccCCCceEEec------
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADS--LRADII---AKVIGRLGLEKTMFEA------ 247 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~--~r~d~i---~~ii~~l~~eklifEA------ 247 (299)
+ ..+.+ .+.++.+-+.|+..|++-..+ ....-. .-.+.+ .++++..|+ ++..|.
T Consensus 81 ~----------~~~~~---~~~i~~a~~lG~~~v~~~~~~-~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~~~~~~ 145 (271)
T d2q02a1 81 E----------VVKKT---EGLLRDAQGVGARALVLCPLN-DGTIVPPEVTVEAIKRLSDLFARYDI-QGLVEPLGFRVS 145 (271)
T ss_dssp H----------HHHHH---HHHHHHHHHHTCSEEEECCCC-SSBCCCHHHHHHHHHHHHHHHHTTTC-EEEECCCCSTTC
T ss_pred H----------HHHHH---HHHHHHHHHcCCcEEEEecCC-CCccchHHHHHHHHHHHHHHhccCCe-EEEEeecCCcCc
Confidence 0 12333 333445556799999885431 111101 112222 333444553 455664
Q ss_pred --CCchhHHHHHHHhCCCcccccCCC
Q 022296 248 --TNPRTSEWFIRRYGPKVNLFVDHS 271 (299)
Q Consensus 248 --P~k~qQ~~fI~~fG~~VNLgI~~~ 271 (299)
....+...+|+..++++.+..|+.
T Consensus 146 ~~~~~~~~~~li~~~~~~~g~~~D~~ 171 (271)
T d2q02a1 146 SLRSAVWAQQLIREAGSPFKVLLDTF 171 (271)
T ss_dssp SCCCHHHHHHHHHHHTCCCEEEEEHH
T ss_pred ccCCHHHHHHHHHHhCCccceeccch
Confidence 245566779999998875544433
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=94.20 E-value=0.13 Score=44.01 Aligned_cols=154 Identities=13% Similarity=0.150 Sum_probs=109.7
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
.....+.......+|.++.... ....+.+..-++.++.+|..+. ....++..+ .++.+.+..+.+.+.|.+.|
T Consensus 104 ~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~~~i 178 (303)
T d1rqba2 104 VVDRFVDKSAENGMDVFRVFDA---MNDPRNMAHAMAAVKKAGKHAQGTICYTISPVH--TVEGYVKLAGQLLDMGADSI 178 (303)
T ss_dssp HHHHHHHHHHHTTCCEEEECCT---TCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTC--CHHHHHHHHHHHHHTTCSEE
T ss_pred hhHHHHHHHHHhhhhHHhhhhh---HHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCC--CHHHHHHHHHHHHhcCCcEE
Confidence 3444555666778999987654 3444568888999999997543 222222111 23467788889999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhh
Q 022296 119 ELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINK 197 (299)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (299)
-+.|-+-.+.+++-.++|+.++++ +-.+ .++..+. . | ....
T Consensus 179 ~l~DT~G~~~P~~v~~li~~l~~~~~~~i--~i~~H~H-n------d--------------------------~Gla--- 220 (303)
T d1rqba2 179 ALKDMAALLKPQPAYDIIKAIKDTYGQKT--QINLHCH-S------T--------------------------TGVT--- 220 (303)
T ss_dssp EEEETTCCCCHHHHHHHHHHHHHHHCTTC--CEEEEEB-C------T--------------------------TSCH---
T ss_pred eecCccchhhhHHHHHHHHHHHhhcCCcc--cceeccC-c------h--------------------------HHHH---
Confidence 999999999999999999999885 2222 3444321 1 1 2233
Q ss_pred HHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 198 SRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+..+-..++|||+. |++- |+=...||..++.+-..+.++|
T Consensus 221 ~AN~laA~~aG~~~--id~ti~GlG~~~GN~~te~lv~~L~~~g 262 (303)
T d1rqba2 221 EVSLMKAIEAGVDV--VDTAISSMSLGPGHNPTESVAEMLEGTG 262 (303)
T ss_dssp HHHHHHHHHTTCSE--EEEBCGGGCSTTSBCBHHHHHHHTTTSS
T ss_pred HHHHHHHHHcCCCE--EEECCccCCCCCCCccHHHHHHHHHhcC
Confidence 56668899999996 6886 8888889999998877777666
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=93.55 E-value=0.073 Score=45.23 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=44.0
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
....+.++++..++|||++|+|+--..=+..+ .|+-.++++..++-- =|+.+ |+-+...++.+.++|+|.
T Consensus 14 ~~~~al~i~~~~~~~i~~iKvG~~l~~~~G~~----~i~~l~~~~~~IflD~K~~DI-----gnTv~~~~~~~~~~~~d~ 84 (237)
T d1dbta_ 14 SAEETLAFLAPFQQEPLFVKVGMELFYQEGPS----IVKQLKERNCELFLDLKLHDI-----PTTVNKAMKRLASLGVDL 84 (237)
T ss_dssp SHHHHHHHTGGGTTSCCEEEECHHHHHHHTHH----HHHHHHHTTCEEEEEEEECSC-----HHHHHHHHHHHHTTTCSE
T ss_pred CHHHHHHHHHHcCCcccEEEECHHHHhhcCHH----HHHHHHhcchheehhhhhccC-----chHHHHHHHhhhccccce
Confidence 56678888899999999999996544333333 455557788766542 12221 112333444455566666
Q ss_pred EEec
Q 022296 118 IELN 121 (299)
Q Consensus 118 IEIS 121 (299)
+-|.
T Consensus 85 vtvh 88 (237)
T d1dbta_ 85 VNVH 88 (237)
T ss_dssp EEEE
T ss_pred EEee
Confidence 6553
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.20 E-value=0.13 Score=44.43 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
+.++++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. ++-+.+ +
T Consensus 28 ~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~-------~~~~~~--------------v------- 79 (296)
T d1xxxa1 28 ATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEA-------VGDRAR--------------V------- 79 (296)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHH-------HTTTSE--------------E-------
T ss_pred HHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHH-------hccccc--------------e-------
Confidence 36888999999999999976422 3469999999999998873 211000 0
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
.+++...+.++. ++.++..-++||+.||+=.-
T Consensus 80 -----i~g~~~~s~~~~---i~~a~~a~~~Gad~v~i~~P 111 (296)
T d1xxxa1 80 -----IAGAGTYDTAHS---IRLAKACAAEGAHGLLVVTP 111 (296)
T ss_dssp -----EEECCCSCHHHH---HHHHHHHHHHTCSEEEEECC
T ss_pred -----EeccccchhHHH---HHHHHHHHHhcCCeEEEEec
Confidence 011112236677 99999999999999999664
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=92.79 E-value=0.28 Score=42.09 Aligned_cols=111 Identities=10% Similarity=0.087 Sum_probs=67.1
Q ss_pred hHHHHHHHH-HHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDC-KQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~-k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.++++++++ .+.|++.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 25 ~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv------------------------ 80 (293)
T d1f74a_ 25 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQV------------------------ 80 (293)
T ss_dssp HHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC------------------------
T ss_pred HHHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCcccccccc------------------------
Confidence 688889887 56699998885332 489999999999988773 1111111122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCC
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 249 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~ 249 (299)
...+.++. ++.++..-++||+.|++=.--.|....+--.+-..++++..++.=+|+..|.
T Consensus 81 ----------~~~s~~~~---iela~~a~~~Gad~i~~~pP~~~~~s~~~~~~~~~~v~~~~~~pi~iYn~P~ 140 (293)
T d1f74a_ 81 ----------GSVNLKEA---VELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPF 140 (293)
T ss_dssp ----------CCSCHHHH---HHHHHHHHHHTCSEEECCCCCSSCCCHHHHHHHHHHHHHHHCCCEEEECCSS
T ss_pred ----------ccccHHHH---HHHHHHHHHcCCCEeeccCccccccchHHHHHHHhcccccCCceEEEEeecc
Confidence 11225667 8999999999999999966533322111011222334444445555555554
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.47 E-value=0.9 Score=39.35 Aligned_cols=111 Identities=23% Similarity=0.241 Sum_probs=84.9
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+.+++..|-|+|=+--..+ +.++..++++.+++.||.|+-|++-
T Consensus 118 I~ea~~~GADaiLLI~~~L--~~~~l~~l~~~a~~lgl~~LvEvh~---------------------------------- 161 (247)
T d1a53a_ 118 IDDAYNLGADTVLLIVKIL--TERELESLLEYARSYGMEPLIEIND---------------------------------- 161 (247)
T ss_dssp HHHHHHHTCSEEEEEGGGS--CHHHHHHHHHHHHTTTCCCEEEECS----------------------------------
T ss_pred HHHHHHhhcchhhhhhhhc--cHHHHHHHHHHHHHHhhhHHhhcCC----------------------------------
Confidence 6789999999999887766 7889999999999999999988865
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCce-EEecC-CchhHHHHHHHhCCCc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT-NPRTSEWFIRRYGPKV 264 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ekl-ifEAP-~k~qQ~~fI~~fG~~V 264 (299)
.+++ ++.+++||+.|.|-.|++. +-++..+...+++..+|.+.+ |-|.= .-..+...+++.|.|-
T Consensus 162 ----~~El-------~~a~~~~a~iIGINnRnL~--t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~da 228 (247)
T d1a53a_ 162 ----ENDL-------DIALRIGARFIGINSRDLE--TLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNA 228 (247)
T ss_dssp ----HHHH-------HHHHHTTCSEEEEESBCTT--TCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCE
T ss_pred ----HHHH-------HHHHhCCCCeEeeeccChh--hhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCE
Confidence 1233 7889999999999999884 345566777888888986544 45553 2334566677777764
Q ss_pred cc
Q 022296 265 NL 266 (299)
Q Consensus 265 NL 266 (299)
=|
T Consensus 229 vL 230 (247)
T d1a53a_ 229 FL 230 (247)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Endonuclease IV domain: Endonuclease IV species: Escherichia coli [TaxId: 562]
Probab=91.52 E-value=0.55 Score=38.82 Aligned_cols=47 Identities=4% Similarity=0.054 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+.+-++.++++||++|||-.+. -++++++..++-+.+++.|+.+.+
T Consensus 13 ~l~~a~~~a~e~G~~~ieif~~~P~~w~~~~~~~~~~~~~k~~~~~~gl~~~~ 65 (285)
T d1qtwa_ 13 GLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQ 65 (285)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGG
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCcce
Confidence 56777788999999999995432 357788888888889999887555
|
| >d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.11 E-value=2.5 Score=35.88 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=50.4
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCC-hhHHHHHHHHHHhCCceecC----Cc---HHHHHHH-------------
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMP-KPFIEEVVKRAHQHDVYVST----GD---WAEHLIR------------- 97 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p-~~~l~eKI~l~~~~gV~v~~----Gt---lfE~a~~------------- 97 (299)
......++++.-++||+++|+|.=-..-+. +..++....+++++|..+.. ++ =.+.++.
T Consensus 40 ~~~eal~li~~l~~~v~~~Kig~~lf~~~G~~~~~~~~~~~~~~~~~~IflDlK~~DIpnTv~~a~~a~~~~~~~~~d~v 119 (267)
T d1dqwa_ 40 TTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADIT 119 (267)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECGGGCSSCCTTTTHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHSTTTCHHHHCSEE
T ss_pred CHHHHHHHHHHhCCcceEEEECHHHHhhcChHHHHHHHHHHHhccCceEecCccccCCcHHHHHHHHHHHHHhhcCCcEE
Confidence 678899999999999999999953222222 23444455666777876643 21 1111111
Q ss_pred -----hCCchHHHHHHHHHHcCCCE
Q 022296 98 -----NGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 98 -----qg~~~~~~yl~~~k~lGF~~ 117 (299)
-|++.++.+++.+++.+...
T Consensus 120 Tvh~~~G~~~l~~~~~~~~~~~~~~ 144 (267)
T d1dqwa_ 120 NAHGVVGPGIVSGLKQAAEEVTKEP 144 (267)
T ss_dssp EEESTTCTHHHHHHHHHHHHHCSSC
T ss_pred EecCcCCHHHHHHHHHHhhccCCcc
Confidence 24567888998888877554
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=90.76 E-value=0.37 Score=44.40 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=87.7
Q ss_pred cccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc----
Q 022296 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL---- 125 (299)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti---- 125 (299)
+.-|+-+=||+||-.+.+++.|++.++.++++-- +.+. .|..+.-+|.. =+++++.++++||+.|.+.-=+.
T Consensus 99 ~~~v~~i~~GGGTPt~L~~~~l~~ll~~l~~~~~-~~~~--~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~v 175 (441)
T d1olta_ 99 GRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQ-FNAD--AEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEV 175 (441)
T ss_dssp TCCEEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-EEEE--EEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHH
T ss_pred CCccceeEecCCCcCCCCHHHHHHHHHHHhhhcc-ccch--hcccccccccccchHHHHHHHHhCCceEEecchhcchhh
Confidence 4558889999999999999999999999987632 1111 23333334332 35789999999999976633222
Q ss_pred ------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhH
Q 022296 126 ------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKS 198 (299)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 198 (299)
.-+.++-.++|+.+++.||. |-..+-. +. | -.+.+.+ .
T Consensus 176 l~~i~R~~~~~~~~~~~~~~r~~g~~~vn~DLI~--Gl----------------P--------------gqT~~~~---~ 220 (441)
T d1olta_ 176 QRLVNREQDEEFIFALLNHAREIGFTSTNIDLIY--GL----------------P--------------KQTPESF---A 220 (441)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEE--SC----------------T--------------TCCHHHH---H
T ss_pred hhhhhcCCCHHHHHHHHHHHHhcccceeeccccc--cc----------------C--------------CcchHHH---H
Confidence 23566777899999999987 4333322 11 1 0126677 8
Q ss_pred HHHHHHHHccCcEEEEe
Q 022296 199 RRAERCLEAGADMIMID 215 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiE 215 (299)
+.++.-++.+.+.|-+=
T Consensus 221 ~tl~~~~~l~pd~is~y 237 (441)
T d1olta_ 221 FTLKRVAELNPDRLSVF 237 (441)
T ss_dssp HHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHhhCCCccccc
Confidence 88888999999999663
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=90.51 E-value=0.39 Score=42.26 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=76.2
Q ss_pred chhHHHHHHHhhcccccEEEeeCccc---------------ccCChhHHHHHHHHH---H-hCCceecCCcHHHHHHHhC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSH---------------SLMPKPFIEEVVKRA---H-QHDVYVSTGDWAEHLIRNG 99 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs---------------~l~p~~~l~eKI~l~---~-~~gV~v~~GtlfE~a~~qg 99 (299)
....+.++++...+.+|++=+|+=.| +|-.--.+++-++++ | ++++++..=|++...+..|
T Consensus 28 ~~~~~~~~l~~l~~gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G 107 (271)
T d1ujpa_ 28 SREGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWG 107 (271)
T ss_dssp CHHHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHC
T ss_pred CHHHHHHHHHHHHcCCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEeechhhhhCC
Confidence 56677788887777899999998655 221111122222222 2 3455444447888888886
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+++|++.|++.|++.+=|=| +|.|+..++...++++|+...+=+..
T Consensus 108 ---~~~F~~~~~~aGvdGliipD----LP~ee~~~~~~~~~~~gl~~I~lvsP 153 (271)
T d1ujpa_ 108 ---PERFFGLFKQAGATGVILPD----LPPDEDPGLVRLAQEIGLETVFLLAP 153 (271)
T ss_dssp ---HHHHHHHHHHHTCCEEECTT----CCGGGCHHHHHHHHHHTCEEECEECT
T ss_pred ---chhHhHHHhhcCceeEeccc----hhhhhHHHHHHHhhccccceeeccCC
Confidence 89999999999999998755 88888888999999999987765544
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=90.51 E-value=0.94 Score=38.38 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+.+.++++++-+-|.+.|=+--.| ..|+.++|.++++.+.+.. =++.-=+|+
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv------------------------ 77 (295)
T d1o5ka_ 22 ESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGA------------------------ 77 (295)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEEC------------------------
T ss_pred HHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeec------------------------
Confidence 368888999989999998875433 4799999999999988841 111111122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
...+.++. ++.++..-++|||.|++=.-
T Consensus 78 ----------~~~st~~a---i~~a~~A~~~Gad~v~v~pP 105 (295)
T d1o5ka_ 78 ----------GTNSTEKT---LKLVKQAEKLGANGVLVVTP 105 (295)
T ss_dssp ----------CCSCHHHH---HHHHHHHHHHTCSEEEEECC
T ss_pred ----------ccccHHHH---HHHHHHHHHcCCCEEEEeCC
Confidence 12235666 99999999999999999653
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=89.10 E-value=0.38 Score=40.82 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCEEEecCCc----------c------------cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 022296 104 KEYVEDCKQVGFDTIELNVGS----------L------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 153 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGt----------i------------~i-----~~~~r~~lI~~~~~~G~~v~~E~gvK 153 (299)
.+=+.++|+|||++|.|+==+ - .+ +.++..+||+.+.++|++|+-.+-.-
T Consensus 40 ~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~N 116 (357)
T d1gcya2 40 RQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPN 116 (357)
T ss_dssp HHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhcccCccCCCHHHHHHHHHHHHhcCCeEEEEEecc
Confidence 333789999999999998210 0 11 24888999999999999999988663
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.69 E-value=0.68 Score=40.04 Aligned_cols=107 Identities=13% Similarity=0.192 Sum_probs=75.5
Q ss_pred chhHHHHHHHhhcccccEEEeeCccc---------------ccC---ChhHHHHHHHHHHhC-CceecCCcHHHHHHHhC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSH---------------SLM---PKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNG 99 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs---------------~l~---p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg 99 (299)
..+.+.+++......+|++=+|.=.| +|- .-+.+-+.++-.+++ ++++..=|++...+..|
T Consensus 17 ~~~~s~~~l~~l~~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G 96 (248)
T d1geqa_ 17 DKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAG 96 (248)
T ss_dssp CHHHHHHHHHHHGGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHC
T ss_pred CHHHHHHHHHHHHcCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEeccccccccC
Confidence 55677788888778999999987433 111 111222233333433 34444557788888875
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+++|++.|++.|++.+=|=| +|.|+-.++...++++|+...+=+..
T Consensus 97 ---~~~f~~~~~~~Gv~GliipD----LP~eE~~~~~~~~~~~gl~~I~lvaP 142 (248)
T d1geqa_ 97 ---VRNFLAEAKASGVDGILVVD----LPVFHAKEFTEIAREEGIKTVFLAAP 142 (248)
T ss_dssp ---HHHHHHHHHHHTCCEEEETT----CCGGGHHHHHHHHHHHTCEEEEEECT
T ss_pred ---HHHHhhhhcccCeeEEeccC----CcHHHHHHHHhhccccCcceEEEecc
Confidence 99999999999999998754 78888889999999999887765544
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.62 E-value=1.4 Score=36.11 Aligned_cols=97 Identities=9% Similarity=0.081 Sum_probs=64.7
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
......++++..++|||++|+|..-..=+..+.++ ++.+++|.++..- =+..+ |+-...|.+.+.++|+|.
T Consensus 13 ~~~~a~~l~~~~~~~v~~iKig~~l~~~~G~~~v~---~l~~~~~~~i~~D~K~~DI-----g~t~~~~~~~~~~~gad~ 84 (212)
T d1km4a_ 13 NRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIA---EFRKRFGCRIIADFAVADI-----PETNEKICRATFKAGADA 84 (212)
T ss_dssp SHHHHHHHHHHHTTTCSEEEEEHHHHHHHCTHHHH---HHHHHHCCEEEEEEEECSC-----HHHHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHhCCCCcEEEECHHHHHhcCHHHHH---HHHHhcccceehhhhhhcc-----ccHHHHhHhhhccccccE
Confidence 45678889999999999999985443333334444 3556677766532 12221 123456677777899999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022296 118 IELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (299)
+-|+- ..+.+....+++.+++.|..+
T Consensus 85 ~TVh~---~~g~~~i~~~~~~a~~~~~~~ 110 (212)
T d1km4a_ 85 IIVHG---FPGADSVRACLNVAEEMGREV 110 (212)
T ss_dssp EEEES---TTCHHHHHHHHHHHHHHTCEE
T ss_pred EEEec---cCChHHHHHHHHHHHhcCCcc
Confidence 99984 455677777888878776553
|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein IolI species: Bacillus subtilis [TaxId: 1423]
Probab=88.61 E-value=1.2 Score=36.79 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=32.6
Q ss_pred EeeCcccccCChhHHHHHHHHHHhCCc---eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 58 KFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 58 Kfg~GTs~l~p~~~l~eKI~l~~~~gV---~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
|+|.-+..+++...|++.+++++++|. .+.+....-..... ..+++..+.+++.|+..+-++
T Consensus 2 k~~~~~~~~~~~~~l~~~l~~a~~~Gf~~IEl~~~~~~~~~~~~--~~~~~l~~~l~~~gl~i~~~~ 66 (278)
T d1i60a_ 2 KLCFNEATTLENSNLKLDLELCEKHGYDYIEIRTMDKLPEYLKD--HSLDDLAEYFQTHHIKPLALN 66 (278)
T ss_dssp EEEEEGGGGTTTCCHHHHHHHHHHTTCSEEEEETTTHHHHHTTS--SCHHHHHHHHHTSSCEEEEEE
T ss_pred EEEEeHHHhCCCCCHHHHHHHHHHHCcCEEEeCCccccccccCc--ccHHHHHHHHHHcCCcEEEEe
Confidence 566655555555556666666666664 33333322222222 246666666666666655544
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=88.29 E-value=0.33 Score=42.50 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc------------------------CC-----hhHHHHHHHHHHHcCCcccceeee
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLE------------------------IP-----EETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~------------------------i~-----~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+.+=+.++|+|||++|+||-=+-. ++ .++..+||+.+.++|++|+-.+-.
T Consensus 23 i~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~df~~Lv~~~H~~Gi~VilD~V~ 101 (393)
T d1e43a2 23 LQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVL 101 (393)
T ss_dssp HHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccCCCCCCHHHHHHHHHHHHHcCCEEEEEEee
Confidence 333489999999999999643211 22 688999999999999999888744
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=87.82 E-value=0.47 Score=40.53 Aligned_cols=144 Identities=17% Similarity=0.098 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.+.++++++.+-|.+.|=+.-. +..|+.++|.++++.+.+. +-++.-=+|+
T Consensus 24 ~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv------------------------- 78 (295)
T d1hl2a_ 24 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHV------------------------- 78 (295)
T ss_dssp HHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeecc-------------------------
Confidence 6788899999999999888643 3479999999999988873 1111111122
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--------------------------ccccC----CCccc
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--------------------------DVCKH----ADSLR 227 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--------------------------gi~d~----~G~~r 227 (299)
...+.++. ++.++..-++||+.|++=.. -+|+. .-.+.
T Consensus 79 ---------~~~s~~~~---i~~a~~a~~~Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~ 146 (295)
T d1hl2a_ 79 ---------GCVSTAES---QQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLT 146 (295)
T ss_dssp ---------CCSSHHHH---HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCC
T ss_pred ---------ccchhhHH---HHHHHHHHhcCCceeeeeeccccCCChHHHHHHHHHHhcccCcCcccccccccccccccc
Confidence 11225666 88899999999999999763 13432 22567
Q ss_pred HHHHHHHHhccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 228 ADIIAKVIGRLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 228 ~d~i~~ii~~l~-~eklifEAP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
.+++.++.+ .+ +--+=.++++..+... +++.++++.+.-..++ .-+++++.|--|
T Consensus 147 ~~~l~~L~~-~pnvvgiK~~~~~~~~~~~-~~~~~~~~~v~~g~~~-~~~~~~~~G~~G 202 (295)
T d1hl2a_ 147 LDQINTLVT-LPGVGALKQTSGDLYQMEQ-IRREHPDLVLYNGYDE-IFASGLLAGADG 202 (295)
T ss_dssp HHHHHHHHT-STTEEEEEECCCCHHHHHH-HHHHCTTCEEEECCGG-GHHHHHHHTCCE
T ss_pred ccccccccc-CcchhhhccccccHHHHHH-HhhcCCCceEecccHH-HHhhhhccCCCc
Confidence 888898875 44 5555577777665444 4566777776543333 447888876544
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=87.35 E-value=0.35 Score=41.64 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc------------cCC---------hhHHHHHHHHHHHcCCcccceeee
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSL------------EIP---------EETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti------------~i~---------~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.++-.++++++||++|+||==+- ..+ .++..++|+.++++|++|+-.+-.
T Consensus 17 ~~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV~ 87 (354)
T d1g94a2 17 AQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLI 87 (354)
T ss_dssp HHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCceeEEEeec
Confidence 34556678999999999974322 221 789999999999999999988755
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=87.29 E-value=0.86 Score=39.64 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=74.1
Q ss_pred chhHHHHHHHhhc-ccccEEEeeCccc-ccCChhHHHHHHHHH-----------------HhC--CceecCCcHHHHHHH
Q 022296 39 SHNVLEDIFESMG-QFVDGLKFSGGSH-SLMPKPFIEEVVKRA-----------------HQH--DVYVSTGDWAEHLIR 97 (299)
Q Consensus 39 g~~~l~DlLe~ag-~yID~lKfg~GTs-~l~p~~~l~eKI~l~-----------------~~~--gV~v~~GtlfE~a~~ 97 (299)
.+..+.++++.+- .-+|++=+|+=.| .+.+-..+++--+.+ ++. .+++..=|+.-..+.
T Consensus 29 ~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~ 108 (267)
T d1qopa_ 29 GIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFN 108 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccchhh
Confidence 5667788887764 4599999997544 233333333333222 222 345555566666666
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.| +++|++.|++.|++.+-|=| +|.++-..+.+.++++|+...+=+..
T Consensus 109 ~G---~~~f~~~~~~~Gv~GliipD----lP~ee~~~~~~~~~~~~l~~I~lvaP 156 (267)
T d1qopa_ 109 NG---IDAFYARCEQVGVDSVLVAD----VPVEESAPFRQAALRHNIAPIFICPP 156 (267)
T ss_dssp TC---HHHHHHHHHHHTCCEEEETT----CCGGGCHHHHHHHHHTTCEEECEECT
T ss_pred cC---chHHHHHHHhcCCCceeccc----hhhhhhHHHHHhhhccCceEEEEecc
Confidence 64 89999999999999999977 77777778888889988886665544
|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein IolI species: Bacillus subtilis [TaxId: 1423]
Probab=87.11 E-value=0.61 Score=38.64 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcCCccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
.+++-++.|++.||+.||+..... ..+..+...+-+.++++|+++.
T Consensus 15 ~l~~~l~~a~~~Gf~~IEl~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 63 (278)
T d1i60a_ 15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPL 63 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEE
T ss_pred CHHHHHHHHHHHCcCEEEeCCccccccccCcccHHHHHHHHHHcCCcEE
Confidence 355555555555555555544321 1122223344455555555544
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=86.09 E-value=0.37 Score=40.23 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCEEEecCCc-------------ccCC------hhHHHHHHHHHHHcCCcccceeee
Q 022296 103 FKEYVEDCKQVGFDTIELNVGS-------------LEIP------EETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt-------------i~i~------~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+.+-|.++++|||++|++|==+ ..++ .++..++|+.+.++|++|+-.+-.
T Consensus 23 i~~kLdyl~~lGv~~i~L~Pi~~~~~~~gY~~~d~~~id~~~~G~~~~f~~lv~~~H~~gi~VilD~V~ 91 (347)
T d1ht6a2 23 MMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVI 91 (347)
T ss_dssp HHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHhHHHHHHcCCCEEEECCCCcCCCCCCCCccCcCcCCcccCCCHHHHHHHHHHHhhcceEEeeeccc
Confidence 3344778899999999997322 2222 277899999999999999988854
|
| >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
Probab=86.08 E-value=0.78 Score=38.53 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCEEEe------cCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 022296 104 KEYVEDCKQVGFDTIEL------NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEI------SdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK 153 (299)
++.++..|+.||++|-| .+|.-.+ +.-.+++++|+++||+|+-.++--
T Consensus 30 ~~~~~~lk~~G~n~VRi~vW~~p~~g~~~~--~~~~~~v~~a~~~gl~vil~~h~~ 83 (332)
T d1hjsa_ 30 QPLENILAANGVNTVRQRVWVNPADGNYNL--DYNIAIAKRAKAAGLGVYIDFHYS 83 (332)
T ss_dssp CCHHHHHHHTTCCEEEEEECSSCTTCTTSH--HHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccHHHHHHHcCCCEEEeeeeecCCCCccCH--HHHHHHHHHHHHCCCEEEEEecCC
Confidence 45778899999999999 6777654 445679999999999999888753
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=85.83 E-value=0.34 Score=38.37 Aligned_cols=95 Identities=9% Similarity=-0.101 Sum_probs=52.5
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
....+-++++..++|||++|+|+=-..=+..+.+++..+.+. +..+. ...-..+ --..+.+.+.+.|.|.|
T Consensus 12 ~~~~~~~~~~~~~~~vdiikig~~~~~~~G~~~i~~l~~~~~--~~~i~-----~d~k~~d--~~~~~~~~~~~~gad~v 82 (213)
T d1q6oa_ 12 TMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYP--HKIVL-----ADAKIAD--AGKILSRMCFEANADWV 82 (213)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHHHCT--TSEEE-----EEEEECS--CHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHhcCCCccEEEeCeeccccCCHHHHHHHHHhcc--cccce-----eEEeecc--chHHHHHHHHHcCCCEE
Confidence 567888889999999999999864433344444554444332 22221 0000111 12223344566677777
Q ss_pred EecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 119 ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
-+. .....+.-..+++.+++.|.+
T Consensus 83 tvh---~~~g~~~~~~~~~~~~~~~~~ 106 (213)
T d1q6oa_ 83 TVI---CCADINTAKGALDVAKEFNGD 106 (213)
T ss_dssp EEE---TTSCHHHHHHHHHHHHHTTCE
T ss_pred EEe---ccCCchHHHHHHHHHHHcCCc
Confidence 765 223455555666666665554
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=85.62 E-value=4.2 Score=33.92 Aligned_cols=168 Identities=17% Similarity=0.189 Sum_probs=98.0
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccC----ChhHHHHHHHHHHhCCceecC-C--c--HH
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM----PKPFIEEVVKRAHQHDVYVST-G--D--WA 92 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~----p~~~l~eKI~l~~~~gV~v~~-G--t--lf 92 (299)
+..|++-++-++. .+...+..++.+..| +.+..++|.+.-. +...+.....+...+.-.+.. | | ++
T Consensus 29 ~~~gV~~~v~~~t----~~~~~~~~~~l~~~~-~~i~~~~GiHP~~~~~~~~~~~~~~~~~~~~~~~~~v~iGEiGld~~ 103 (259)
T d1zzma1 29 AQAGVGKIIVPAT----EAENFARVLALAENY-QPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLF 103 (259)
T ss_dssp HHTTEEEEEEECC----SGGGHHHHHHHHHHC-TTEEEEECCCGGGGGGCCHHHHHHHHHHHHHCCSSEEEEEEEEEECC
T ss_pred HHcCCCEEEEecC----CHHHHHHHHHHHhcC-ccccccccCCchHhhccchhhHHHHHHHHhccCcccceecccccccc
Confidence 4568988888888 455888888888777 5577888877642 333344555555555432221 2 2 11
Q ss_pred ----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022296 93 ----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (299)
Q Consensus 93 ----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~ 168 (299)
+..-++- .|++.++.|++++...+==+-+.- + ++++..++.+... -++-...+
T Consensus 104 ~~~~~~~~q~~--~f~~ql~lA~~~~~Pv~IH~r~a~----~---~~~~~l~~~~~~~---~~i~H~f~----------- 160 (259)
T d1zzma1 104 GDDPQFERQQW--LLDEQLKLAKRYDLPVILHSRRTH----D---KLAMHLKRHDLPR---TGVVHGFS----------- 160 (259)
T ss_dssp SSCCCHHHHHH--HHHHHHHHHHHTTCCEEEEEESCH----H---HHHHHHHHHCCTT---CEEETTCC-----------
T ss_pred ccchhhhHHHH--HHHHHHHHHHHhccchhhhhHHHH----H---HHHHhhhcccccc---ceeeeccc-----------
Confidence 1122333 688999999999988654332221 2 3444444433321 12321111
Q ss_pred ccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 169 AYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
.+ .+.+++.++.|.+.=+ =+.-.+.++.+ +.++++.+|++||++|..
T Consensus 161 ------------------g~---------~~~~~~~l~~g~~~si-~~~~~~~~~~~-----~~~~v~~iPldriL~ETD 207 (259)
T d1zzma1 161 ------------------GS---------LQQAERFVQLGYKIGV-GGTITYPRASK-----TRDVIAKLPLASLLLETD 207 (259)
T ss_dssp ------------------SC---------HHHHHHHHHTTCEEEE-CGGGGCTTTCS-----HHHHHHHSCGGGEEECCC
T ss_pred ------------------CC---------HHHHHHHHHcCCCccc-cccccccchHH-----HHHHHHhhccceEEEecC
Confidence 01 4445888999975433 23223444444 557889999999999987
Q ss_pred Cc
Q 022296 249 NP 250 (299)
Q Consensus 249 ~k 250 (299)
.|
T Consensus 208 ~P 209 (259)
T d1zzma1 208 AP 209 (259)
T ss_dssp BT
T ss_pred CC
Confidence 54
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=85.57 E-value=4.9 Score=33.75 Aligned_cols=171 Identities=17% Similarity=0.184 Sum_probs=106.2
Q ss_pred CCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCC----hhHHHHHHHHHHhCCceecC--C-cHH-
Q 022296 21 PRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVST--G-DWA- 92 (299)
Q Consensus 21 PR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p----~~~l~eKI~l~~~~gV~v~~--G-tlf- 92 (299)
-|..|++-++-+|. .+...+..++.+..| +.+..+.|.+--+- .+.+...-.++.+..|.--. | .+.
T Consensus 28 a~~~gV~~ii~~~~----~~~~~~~~~~la~~~-~~i~~a~GiHP~~~~~~~~~~~~~l~~~~~~~~vvaIGEiGLD~~~ 102 (260)
T d1j6oa_ 28 FEENNIEFVVNVGV----NLEDSKKSLDLSKTS-DRIFCSVGVHPHDAKEVPEDFIEHLEKFAKDEKVVAIGETGLDFFR 102 (260)
T ss_dssp TTTTTEEEEEEECS----SHHHHHHHHHHHTTC-TTEEEEECCCGGGGGGCCTTHHHHHHHHTTSTTEEEEEEEEEETTT
T ss_pred HHHCCCCEEEEecC----CHHHHHHHHHHHHhc-cccccccccChhhcccccchhhhhhHHHHhhCCeeeEeeccccccc
Confidence 36789999999998 566899999988887 66778888776542 23454444444444442111 3 221
Q ss_pred --H-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022296 93 --E-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (299)
Q Consensus 93 --E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~ 169 (299)
+ ...++. .|.+.++.|++++...|==+-+ ...++++.+++.+..... ++-...+ |
T Consensus 103 ~~~~~~~Q~~--vF~~ql~lA~~~~lPviiH~r~-------a~~~~~~il~~~~~~~~~--~i~H~fs--G--------- 160 (260)
T d1j6oa_ 103 NISPAEVQKR--VFVEQIELAGKLNLPLVVHIRD-------AYSEAYEILRTESLPEKR--GVIHAFS--S--------- 160 (260)
T ss_dssp CSSCHHHHHH--HHHHHHHHHHHHTCCEEEEEES-------CHHHHHHHHHHSCCCSSC--EEETTCC--S---------
T ss_pred cccHHHHHHH--HHHHHHHHHHhcCcceEEeecc-------chHHHHHHHHhhcCCCCC--eeeeccc--c---------
Confidence 1 123343 6999999999999987744433 234677777775443111 2211111 0
Q ss_pred cccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCC
Q 022296 170 YVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 249 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~ 249 (299)
+ .+.+++.|+.|.+.=+- +. ++. .+...+.+++..+|+++|+.|...
T Consensus 161 ------------------~---------~~~~~~~l~~g~~is~~-g~-~~~----~~~~~~~~~v~~iPldrlllETD~ 207 (260)
T d1j6oa_ 161 ------------------D---------YEWAKKFIDLGFLLGIG-GP-VTY----PKNEALREVVKRVGLEYIVLETDC 207 (260)
T ss_dssp ------------------C---------HHHHHHHHHHTEEEEEC-GG-GGC----TTCHHHHHHHHHHCGGGEEECCCB
T ss_pred ------------------C---------HHHHHHHHhCCCceeec-cc-ccc----chHHHHHHHHHhcccceEEEecCC
Confidence 1 34458889988866542 11 222 233456778899999999999876
Q ss_pred ch
Q 022296 250 PR 251 (299)
Q Consensus 250 k~ 251 (299)
|-
T Consensus 208 P~ 209 (260)
T d1j6oa_ 208 PF 209 (260)
T ss_dssp TS
T ss_pred CC
Confidence 53
|
| >d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein Lmo2234 species: Listeria monocytogenes [TaxId: 1639]
Probab=85.34 E-value=0.73 Score=38.01 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcCCccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
.+++-++.++++||+.||+...-. .-+..+..++-+.+++.|+++.
T Consensus 16 ~lee~l~~aa~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 64 (275)
T d2g0wa1 16 SFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVT 64 (275)
T ss_dssp CHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHhCCCEEEEccccccccccCcCCHHHHHHHHHHcCCceE
Confidence 688888889999999998852111 0122334567777888888753
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=85.18 E-value=0.61 Score=40.46 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------------------------C-----ChhHHHHHHHHHHHcCCcccceeee
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLE------------------------I-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------------------------i-----~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.+.+=|.++++|||++|.||==+-. + +.++..+||+.|.++|++|+-.+-.
T Consensus 22 ~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~df~~Lv~~aH~~GIkVilDvV~ 101 (394)
T d2d3na2 22 RLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVM 101 (394)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 5677789999999999998643211 2 2578999999999999999877744
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=84.80 E-value=5.1 Score=35.25 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=89.0
Q ss_pred EEeeCcccccCChhHHHHHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 022296 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 132 (299)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r 132 (299)
+-++-|+.-.++...+.-...++++++|+|+. |.-+ +.+..|-+.||+.|=+..-..++.+-.+
T Consensus 46 iq~s~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~------------e~i~~ai~~GftSVMiDgS~l~~eeNi~ 113 (305)
T d1rvga_ 46 LALSEGAMKYGGRALTLMAVELAKEARVPVAVHLDHGSSY------------ESVLRALRAGFTSVMIDKSHEDFETNVR 113 (305)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEEECSH------------HHHHHHHHTTCSEEEECCTTSCHHHHHH
T ss_pred EECCccHHhHccHHHHHHHHHHHhccCCcEEEeehhccCh------------hhhHHHHhcCCceEEEcCccccHHHHHH
Confidence 33343343344445555566666777776664 2222 3456677899999998776665544322
Q ss_pred --HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHH-HccC
Q 022296 133 --LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCL-EAGA 209 (299)
Q Consensus 133 --~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dL-eAGA 209 (299)
.++++.++..|.-|--|+|.=-+ .+|. +........+| ++++. +++. +-|.
T Consensus 114 ~Tk~vv~~Ah~~gv~VEaElG~igg------~Ed~-----~~~~~~~~~~T--------~peea-------~~Fv~~Tgv 167 (305)
T d1rvga_ 114 ETRRVVEAAHAVGVTVEAELGRLAG------IEEH-----VAVDEKDALLT--------NPEEA-------RIFMERTGA 167 (305)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCCC------SCC-----------CCTTCC--------CHHHH-------HHHHHHHCC
T ss_pred HHHHHHHHhchhceeEEeeeeeeec------cccc-----ccccccccccC--------CHHHH-------HHHHHHhCc
Confidence 47888999999999999998311 1220 00000111112 25555 5555 3599
Q ss_pred cEEEEec---cccccCCCc--ccHHHHHHHHhccCCC
Q 022296 210 DMIMIDS---DDVCKHADS--LRADIIAKVIGRLGLE 241 (299)
Q Consensus 210 ~~VIiEa---rgi~d~~G~--~r~d~i~~ii~~l~~e 241 (299)
|..=+== -|.|...++ ++-+.+++|-+.++.-
T Consensus 168 D~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~~~P 204 (305)
T d1rvga_ 168 DYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAP 204 (305)
T ss_dssp SEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSC
T ss_pred cHhhhhhhhhhcccCCCCcccchHHHHHHHHhccCCC
Confidence 9765533 289988766 9999999998776653
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=84.49 E-value=3.2 Score=35.90 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=78.2
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
+++| +.+++.+|=|+|=+-...+ ++++..++++.+++.||.|+-|++-
T Consensus 118 id~~QI~ear~~GADavLLI~~~L--~~~~l~~l~~~a~~lgl~~LVEvh~----------------------------- 166 (254)
T d1piia2 118 IDPYQIYLARYYQADACLLMLSVL--DDDQYRQLAAVAHSLEMGVLTEVSN----------------------------- 166 (254)
T ss_dssp CSHHHHHHHHHTTCSEEEEETTTC--CHHHHHHHHHHHHHTTCEEEEEECS-----------------------------
T ss_pred CcHHHHHHHHhhccchhhhhHhhh--cccHHHHHHHHHHHHhhhHHHhhcc-----------------------------
Confidence 3444 6789999999999988776 6788899999999999999988865
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHH
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRR 259 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ekl-ifEAP~k-~qQ~~fI~~ 259 (299)
.+++ ++.+++||..|-|-.|.+-. =++.-+...+++..+|-+.+ +-|.=-+ ..+..+++.
T Consensus 167 ---------~~El-------~~a~~~~a~iIGINnRnL~t--f~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~ 228 (254)
T d1piia2 167 ---------EEEQ-------ERAIALGAKVVGINNRDLRD--LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSH 228 (254)
T ss_dssp ---------HHHH-------HHHHHTTCSEEEEESEETTT--TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTT
T ss_pred ---------HHHH-------HHHHhhcccccCccccchhh--hhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHHHc
Confidence 1233 78899999999999997632 22334555667777876654 4465432 344555544
|
| >d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Hypothetical protein YgbM (EC1530) domain: Hypothetical protein YgbM (EC1530) species: Escherichia coli [TaxId: 562]
Probab=84.39 E-value=0.31 Score=39.15 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+++.++.++++||++||+.+- -+.+. .++-+.+++.|+++..
T Consensus 16 pl~e~i~~a~~~Gf~gIEl~~~-~~~~~---~~~~~~l~~~gl~~~~ 58 (260)
T d1k77a_ 16 PFIERFAAARKAGFDAVEFLFP-YNYST---LQIQKQLEQNHLTLAL 58 (260)
T ss_dssp CGGGHHHHHHHHTCSEEECSCC-TTSCH---HHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHhCCCEEEECCC-CCCCH---HHHHHHHHHCCCcEEE
Confidence 5888899999999999999743 23333 3566778889998643
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=84.16 E-value=0.65 Score=40.20 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------------------------cCC-----hhHHHHHHHHHHHcCCcccceee
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL-------------------------EIP-----EETLLRYVRLVKSAGLKAKPKFA 151 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-------------------------~i~-----~~~r~~lI~~~~~~G~~v~~E~g 151 (299)
.+.+=|+++|+||+++|.||==+- .+. .++..+||+.|.++|++|+-.+-
T Consensus 29 gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd~~~Gt~~d~~~LV~~aH~~GikVIlD~V 108 (361)
T d1mxga2 29 HIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVV 108 (361)
T ss_dssp HHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCEEEEEee
Confidence 466778899999999999884321 112 57899999999999999997665
Q ss_pred e
Q 022296 152 V 152 (299)
Q Consensus 152 v 152 (299)
.
T Consensus 109 ~ 109 (361)
T d1mxga2 109 I 109 (361)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=83.62 E-value=1.5 Score=37.28 Aligned_cols=145 Identities=9% Similarity=0.019 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHcCCCEEEecC--C-cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNV--G-SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISd--G-ti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.++++++++.+-|.+.|=+.- | +..|+.++|.++++.+.+. +=++..=+|+
T Consensus 23 ~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~------------------------- 77 (292)
T d2a6na1 23 SLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGT------------------------- 77 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeec-------------------------
Confidence 678889999999999988853 2 3469999999999988883 1111111111
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CcccH
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRA 228 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~----G~~r~ 228 (299)
...+..+. ++.++..-++||+.+++=.- -||+.- -.+..
T Consensus 78 ---------~~~s~~~~---i~~~~~a~~~Gad~~~~~pP~~~~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~ 145 (292)
T d2a6na1 78 ---------GANATAEA---ISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLP 145 (292)
T ss_dssp ---------CCSSHHHH---HHHHHTTTTSSCCEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCH
T ss_pred ---------ccchHHHH---HHHhccHHhcCCcceeccCCCCCCCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCH
Confidence 11225566 89999999999999988542 156532 24667
Q ss_pred HHHHHHHhccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 229 DIIAKVIGRLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 229 d~i~~ii~~l~-~eklifEAP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
+.+.++.+ ++ +-=+-...++..+...+++..++++.++...++ .-++.++.|-.|
T Consensus 146 e~~~~L~~-~pnv~giK~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~G~~G 201 (292)
T d2a6na1 146 ETVGRLAK-VKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDA-SALDFMQLGGHG 201 (292)
T ss_dssp HHHHHHHT-STTEEEEEECSCCTTHHHHHHTTSCTTSEEEECCGG-GHHHHHHTTCCE
T ss_pred HHHHHHhc-CCCEEEEEeccCcchhhhhhhhhcCCccEEeecchh-hhhhHhhCCceE
Confidence 77777753 44 333445667777788888888887776644333 445666655444
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=83.58 E-value=5.2 Score=33.60 Aligned_cols=172 Identities=16% Similarity=0.162 Sum_probs=103.1
Q ss_pred CCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCCh----hHHHHHHHHHHhCCceecC--C-cHH-
Q 022296 21 PRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK----PFIEEVVKRAHQHDVYVST--G-DWA- 92 (299)
Q Consensus 21 PR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~----~~l~eKI~l~~~~gV~v~~--G-tlf- 92 (299)
-|..|++-++.+|. .+...+..++.+..| +.+..+.|-+.-+-. ..+....+++++..|..-. | .++
T Consensus 24 a~~~gV~~ii~~~~----~~~~~~~~~~la~~~-~~v~~a~GiHP~~~~~~~~~~~~~~~~~~~~~~~vaIGEiGLD~~~ 98 (260)
T d1xwya1 24 AFDAGVNGLLITGT----NLRESQQAQKLARQY-SSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNR 98 (260)
T ss_dssp HHHTTCCEEEECCC----SHHHHHHHHHHHHHS-TTEEEEECCCGGGGGGCCHHHHHHHHHHHTSTTEEEEEEEEEETTT
T ss_pred HHHCCCCEEEEecC----CHHHHHHHHHHHHhC-CcccchhhcCcchhhhhhhhHHHHHHHHHhcchhhhhhhhcccccc
Confidence 35679999999998 667999999998888 568889998774332 3344444555554442221 3 211
Q ss_pred ---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022296 93 ---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (299)
Q Consensus 93 ---E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~ 169 (299)
....+|- .|.+-++.+++++-..|==+-+. .+ ++++.+++...+.. -++-...+
T Consensus 99 ~~~~~~~q~~--~f~~ql~lA~~~~lPviiH~r~a----~~---~~~~il~~~~~~~~--~~v~H~f~------------ 155 (260)
T d1xwya1 99 NFSTPEEQER--AFVAQLRIAADLNMPVFMHCRDA----HE---RFMTLLEPWLDKLP--GAVLHCFT------------ 155 (260)
T ss_dssp CSSCHHHHHH--HHHHHHHHHHHHTCCEEEEEESC----HH---HHHHHHGGGGGGSS--CEEECSCC------------
T ss_pred cccchHHHHH--HHHHHHHHHHhcCCceEeeeccc----hh---HHHHHHHHhhccCc--ccchhhhh------------
Confidence 1112333 68888999999998877555443 23 34444444211110 01211111
Q ss_pred cccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCC
Q 022296 170 YVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 249 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~ 249 (299)
.+ .+.+++.++.|.+.-+-= .++... +...+.+++..+|++||+.|...
T Consensus 156 -----------------g~---------~~~~~~~~~~g~~~s~~g--~~~~~~---~~~~~~~~~~~iPldrlllETD~ 204 (260)
T d1xwya1 156 -----------------GT---------REEMQACVAHGIYIGITG--WVCDER---RGLELRELLPLIPAEKLLIETDA 204 (260)
T ss_dssp -----------------CC---------HHHHHHHHHTTCEEEECG--GGGCTT---TSHHHHHHGGGSCGGGEEECCCT
T ss_pred -----------------cc---------HHHHHHhhhhccccccCc--cccchh---hHHHHHHHHHhhhhhheeeecCC
Confidence 01 455689999998764421 123222 23457778899999999999876
Q ss_pred ch
Q 022296 250 PR 251 (299)
Q Consensus 250 k~ 251 (299)
|-
T Consensus 205 P~ 206 (260)
T d1xwya1 205 PY 206 (260)
T ss_dssp TS
T ss_pred CC
Confidence 54
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=83.46 E-value=5.7 Score=33.16 Aligned_cols=170 Identities=14% Similarity=0.165 Sum_probs=106.2
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccC--ChhHHHHHHHHHHhCCceecC--C-cH---HH
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM--PKPFIEEVVKRAHQHDVYVST--G-DW---AE 93 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~--p~~~l~eKI~l~~~~gV~v~~--G-tl---fE 93 (299)
+..|++-++..|. .+...+..++.+..| +.+.++.|-+... ....+++.-+++.+..|..-. | .+ .+
T Consensus 30 ~~~gv~~ii~~~~----~~~~~~~~~~l~~~~-~~i~~~~GiHP~~~~~~~~~e~l~~~~~~~~vvaIGEiGLD~~~~~~ 104 (265)
T d1yixa1 30 AARDVKFCLAVAT----TLPSYLHMRDLVGER-DNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYTPE 104 (265)
T ss_dssp HHTTEEEEEECCS----SHHHHHHHHHHHCSC-TTEEEEECCCTTCCSSCCCHHHHHHHHTSTTEEEEEEEEEECTTCSS
T ss_pred HHcCCCEEEEeeC----CHHHHHHHHHHHHhc-ccccccccccccccccccchHHHHHHhccCCceeeeccccccccccc
Confidence 3569998999998 666899999998888 5577888877633 233466666777777664332 4 22 12
Q ss_pred -HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022296 94 -HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (299)
Q Consensus 94 -~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~ 172 (299)
...+|. .|.+.++.+++++-..+==+-+. .+ ++++.+++....-. -++-...+ |
T Consensus 105 ~~~~q~~--~f~~ql~lA~~~~lPv~iH~r~a----~~---~~~~il~~~~~~~~--~~v~H~Fs--G------------ 159 (265)
T d1yixa1 105 TKVRQQE--SFIHHIQIGRELNKPVIVHTRDA----RA---DTLAILREEKVTDC--GGVLHCFT--E------------ 159 (265)
T ss_dssp CHHHHHH--HHHHHHHHHHHHTCCEEEEEESC----HH---HHHHHHHHTTGGGT--CEEETTCC--S------------
T ss_pred chHHHHH--HHHHHHHHHHHhCCCcccchhhH----HH---HHHHHHHhhcccCc--ceEEEeec--C------------
Confidence 234554 79999999999998877555443 23 34444444322110 12322211 0
Q ss_pred CCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCch
Q 022296 173 RAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 251 (299)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~ 251 (299)
+ .+.+++.++.|.+.=+- +.=.+.+ ...+.++++.+|++||+.|...|-
T Consensus 160 ---------------~---------~~~a~~~l~~g~~~s~~-g~~~~~~-----~~~l~~~v~~iPldrlLlETD~P~ 208 (265)
T d1yixa1 160 ---------------D---------RETAGKLLDLGFYISFS-GIVTFRN-----AEQLRDAARYVPLDRLLVETDSPY 208 (265)
T ss_dssp ---------------C---------HHHHHHHHTTTCEEEEC-GGGGSTT-----CHHHHHHHHHSCGGGEEECCCBTS
T ss_pred ---------------C---------hHHHHHHHHcCCeecCc-cccccch-----hHHHHHHHHhcchhceEeecCCcc
Confidence 1 45568999999765443 2212222 235778889999999999987653
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.27 E-value=0.85 Score=39.55 Aligned_cols=50 Identities=10% Similarity=0.212 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc------------------------cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSL------------------------EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti------------------------~i-----~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+.+=|.++|+|||++|.||==+- .+ +.++..++|+.|.++|++|+-.+-.
T Consensus 26 i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt~~df~~LV~~aH~~GIkVIlDvV~ 104 (393)
T d1hvxa2 26 VANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVF 104 (393)
T ss_dssp HHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 45557889999999999874321 12 2478999999999999999988754
|
| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: A4 beta-galactosidase species: Thermus thermophilus [TaxId: 274]
Probab=83.22 E-value=0.39 Score=39.27 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCC--cccCCh------hHHHHHHHHHHHcCCccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG--SLEIPE------ETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG--ti~i~~------~~r~~lI~~~~~~G~~v~ 147 (299)
..++-++.+|++||++|-+|.. +--.|. +..-++|+.++++|++|.
T Consensus 15 ~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G~~~~~~~d~~i~~~~~~Gi~~i 68 (393)
T d1kwga2 15 RWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGWLDEAIATLAAEGLKVV 68 (393)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBCCCHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHcCCCEEEecccchhhcCCCCCccCHHHHHHHHHHHHHCCCEEE
Confidence 5677788999999999988852 111122 344578999999999876
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=82.91 E-value=2.8 Score=36.16 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=73.5
Q ss_pred cCChhHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCCh
Q 022296 66 LMPKPFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPE 129 (299)
Q Consensus 66 l~p~~~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~ 129 (299)
+.-.+.+..-=++++.-+++|.- + ||-+. ..+.+-++...+.|.-.|-|-|... .++.
T Consensus 59 lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~------~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~ 132 (275)
T d1s2wa_ 59 ASWTQVVEVLEFMSDASDVPILLDADTGYGNF------NNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADI 132 (275)
T ss_dssp --CHHHHHHHHHHHHTCSSCEEEECCSSCSSH------HHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCH
T ss_pred cchhhHHHHHHhhhcccCCceeEecccccccc------hHHHHHHHHHHHhccceeEeeccccccccccccccccccccH
Confidence 44455566666778888888874 2 34322 2455667788889999999999642 4778
Q ss_pred hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccC
Q 022296 130 ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGA 209 (299)
Q Consensus 130 ~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 209 (299)
++...-|+.+++.-. -|+|-+- .. -| ++ + ++ ...++. |+++++..+|||
T Consensus 133 ~~~~~ki~aa~~~~~--~~~~~i~---AR----tD----a~-----~-------~~---~gl~ea---i~R~~aY~eAGA 181 (275)
T d1s2wa_ 133 EEFALKIKACKDSQT--DPDFCIV---AR----VE----AF-----I-------AG---WGLDEA---LKRAEAYRNAGA 181 (275)
T ss_dssp HHHHHHHHHHHHHCS--STTCEEE---EE----EC----TT-----T-------TT---CCHHHH---HHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhhcc--CcceeEE---ec----ch----hh-----h-------hc---CCHHHH---HHHHHHHHhcCC
Confidence 887777887776311 1233221 10 11 00 0 00 126777 999999999999
Q ss_pred cEEEEecc
Q 022296 210 DMIMIDSD 217 (299)
Q Consensus 210 ~~VIiEar 217 (299)
|.|.+|+.
T Consensus 182 D~vf~~~~ 189 (275)
T d1s2wa_ 182 DAILMHSK 189 (275)
T ss_dssp SEEEECCC
T ss_pred Ceeeeccc
Confidence 99999985
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=82.32 E-value=0.74 Score=39.42 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCEEEecC----------CcccC--------ChhHHHHHHHHHHHcCCcccceeee
Q 022296 105 EYVEDCKQVGFDTIELNV----------GSLEI--------PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISd----------Gti~i--------~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+-|.++|+|||++|+++= ...+. +.++..++|+.+.++|++|.-.+-.
T Consensus 57 ~kLdyl~~lGi~~I~l~Pv~~~~~~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~ 122 (382)
T d1wzla3 57 DRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVF 122 (382)
T ss_dssp HTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HhhHHHHHCCCCEEEECCcCCCCcccCCccccccccccCCCCHHHHHHHHHHHHhcccceEeeeee
Confidence 346788999999999973 11111 5689999999999999999988755
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.28 E-value=0.4 Score=41.91 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCEEEecC----------------Ccc----cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022296 105 EYVEDCKQVGFDTIELNV----------------GSL----EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISd----------------Gti----~i-----~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+-.+++++|||++|+||= |.- .+ +.++..+||+.|+++|++|+-.+-.
T Consensus 27 e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk~Lv~~aH~~GI~VIlDvV~ 99 (403)
T d1hx0a2 27 ECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVI 99 (403)
T ss_dssp HHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCCCccCCCCCCHHHHHHHHHHHHhcCCEEEEEEec
Confidence 444668999999999993 211 12 2468999999999999999887744
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=82.01 E-value=4.7 Score=31.27 Aligned_cols=107 Identities=7% Similarity=-0.050 Sum_probs=58.1
Q ss_pred ccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHH
Q 022296 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLV 139 (299)
Q Consensus 65 ~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~ 139 (299)
.....+.+++-++.++++|+.+..... +..-.+......+.|.+.+-+.-+.. .......++.|+..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~ 157 (213)
T d1q6oa_ 86 CCADINTAKGALDVAKEFNGDVQIELT--------GYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRL 157 (213)
T ss_dssp TTSCHHHHHHHHHHHHHTTCEEEEEEC--------SCCCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHcCCceecccC--------CCCCHHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHh
Confidence 455667788888888888875432100 00111122333445666655432111 12333456677777
Q ss_pred HHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccc
Q 022296 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDV 219 (299)
Q Consensus 140 ~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi 219 (299)
++.++.+.+-.|++ .+.+ +..+++|||.|++ ||+|
T Consensus 158 ~~~~~~i~~~gGi~-------------------------------------~~~~-------~~~~~~Gad~iVV-Gr~I 192 (213)
T d1q6oa_ 158 SDMGFKVTVTGGLA-------------------------------------LEDL-------PLFKGIPIHVFIA-GRSI 192 (213)
T ss_dssp HHTTCEEEEESSCC-------------------------------------GGGG-------GGGTTSCCSEEEE-SHHH
T ss_pred hccCceEecCCCcC-------------------------------------cCCH-------HHHHHcCCCEEEE-Chhh
Confidence 77665544433331 1111 3346899998875 7999
Q ss_pred ccCCC
Q 022296 220 CKHAD 224 (299)
Q Consensus 220 ~d~~G 224 (299)
|+++.
T Consensus 193 ~~a~d 197 (213)
T d1q6oa_ 193 RDAAS 197 (213)
T ss_dssp HTSSC
T ss_pred cCCCC
Confidence 99864
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=81.92 E-value=0.85 Score=40.26 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=36.8
Q ss_pred HHHHHHcCCCEEEecC---------------------------CcccCC------------hhHHHHHHHHHHHcCCccc
Q 022296 107 VEDCKQVGFDTIELNV---------------------------GSLEIP------------EETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 107 l~~~k~lGF~~IEISd---------------------------Gti~i~------------~~~r~~lI~~~~~~G~~v~ 147 (299)
|.++++||+++|.++= .+..+. .++..++|+.|.++|++|+
T Consensus 49 Ldyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVi 128 (475)
T d1bf2a3 49 ASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVY 128 (475)
T ss_dssp HHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCCCCcccCCCcCcccccCCCCCCCHHHHHHHHHHHHhcCcEEE
Confidence 5678999999999982 112333 4679999999999999999
Q ss_pred ceeee
Q 022296 148 PKFAV 152 (299)
Q Consensus 148 ~E~gv 152 (299)
-.+-.
T Consensus 129 lD~V~ 133 (475)
T d1bf2a3 129 MDVVY 133 (475)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 88865
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.64 E-value=0.83 Score=39.18 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=35.6
Q ss_pred HHHHHHcCCCEEEecCCc--------cc----------CChhHHHHHHHHHHHcCCcccceeee
Q 022296 107 VEDCKQVGFDTIELNVGS--------LE----------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGt--------i~----------i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
|+++++|||++|+++==+ -. =+.++..++|+.+.++|++|+-.+-.
T Consensus 59 ldyl~~LGv~~i~L~Pi~~~~~~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~ 122 (382)
T d1j0ha3 59 LDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVF 122 (382)
T ss_dssp HHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHcCCCEEEeCCCCcCCcccCCCcccccccCCCCCCHHHHHHHHHHhhhccceEEEEeee
Confidence 457889999999996410 00 13578899999999999999998855
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=81.64 E-value=3.6 Score=36.17 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCEEEecC--------C----cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 104 KEYVEDCKQVGFDTIELNV--------G----SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd--------G----ti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
++.++.+|+.||++|-|=- + .-.-..+...+++++|+++||+|+--|+......+-+. -.
T Consensus 41 ~d~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~~~~~~~~a~~~Gl~v~ldlH~sd~wadp~~--------q~ 112 (387)
T d1ur4a_ 41 QDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFHYSDFWADPAK--------QK 112 (387)
T ss_dssp CCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSSC--------CC
T ss_pred ccHHHHHHHcCCCEEEeecccCCcccccCcCCCccccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCCC--------CC
Confidence 4578999999999999721 0 01223567778999999999999999987544443211 12
Q ss_pred cCCCCccchhcccCCCccchhhhhhhH-----HHHHHHHHccCcEEEEec
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKS-----RRAERCLEAGADMIMIDS 216 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~dLeAGA~~VIiEa 216 (299)
.|..|... +..++.+.+ ..+++...+|+...|+|-
T Consensus 113 ~p~~w~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei 152 (387)
T d1ur4a_ 113 APKAWANL----------NFEDKKTALYQYTKQSLKAMKAAGIDIGMVQV 152 (387)
T ss_dssp CCGGGTTC----------CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred Cchhhhcc----------chhHHHHHHHHHHHHHHHHHhhcCCCccEEEE
Confidence 35556322 122221112 234556678898889984
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=81.34 E-value=2.8 Score=36.16 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=51.3
Q ss_pred EecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC------Cc-HHHHHHHhCCc
Q 022296 29 MRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST------GD-WAEHLIRNGPS 101 (299)
Q Consensus 29 V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~------Gt-lfE~a~~qg~~ 101 (299)
++.|.. ....++.+.+.|-+| ++.+-.++|. .+.--.++.+..+|.+++ |+ -.|.-+..
T Consensus 43 lL~p~~----t~e~i~~lc~~A~~~------~~aaVcV~P~-~v~~a~~~L~gs~v~v~tVigFP~G~~~~~~K~~E--- 108 (251)
T d1o0ya_ 43 NLKPFA----TPDDIKKLCLEAREN------RFHGVCVNPC-YVKLAREELEGTDVKVVTVVGFPLGANETRTKAHE--- 108 (251)
T ss_dssp ECCTTC----CHHHHHHHHHHHHHH------TCSEEEECGG-GHHHHHHHHTTSCCEEEEEESTTTCCSCHHHHHHH---
T ss_pred CCCCCC----CHHHHHHHHHHHhhc------CceEEEECHH-HHHHHHHHhcCCCceEEeeccCCCCCCcHHHHHHH---
Confidence 566777 566888888888654 7777777775 477767777778887764 42 33333222
Q ss_pred hHHHHHHHHHHcCCCEEEecCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG 123 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG 123 (299)
.++|-+.|-|-|++=-.
T Consensus 109 -----a~~Ai~~GAdEID~Vin 125 (251)
T d1o0ya_ 109 -----AIFAVESGADEIDMVIN 125 (251)
T ss_dssp -----HHHHHHHTCSEEEEECC
T ss_pred -----HHHHHHcCCceEEEEec
Confidence 35677889999986443
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=80.50 E-value=1.3 Score=36.72 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEecCCc--------------------------c--cC-ChhHHHHHHHHHHHcCCcccceeee
Q 022296 107 VEDCKQVGFDTIELNVGS--------------------------L--EI-PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGt--------------------------i--~i-~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
++++|+||+++|++|==+ + .+ +.++..++|+.+.++|++|+-.|-.
T Consensus 29 LdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~~efk~lV~~~H~~GI~VilDvV~ 103 (390)
T d1ud2a2 29 AAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVM 103 (390)
T ss_dssp HHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHcCCCEEEeCCCccCCCCCCCCCCccCCcccccccccCCcCCCCCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 677899999999996421 1 12 4578999999999999999888743
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.35 E-value=2.7 Score=35.51 Aligned_cols=75 Identities=17% Similarity=0.048 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHcCCCEEEecC---CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNV---GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISd---Gti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.+.++++++-+-|.+.|=+.. =+..|+.++|.++++.+.+.--.+.+ |+ +
T Consensus 21 ~~~~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~~~~~i~--gv-------~------------------ 73 (293)
T d1w3ia_ 21 KLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKIIF--QV-------G------------------ 73 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSCEEE--EC-------C------------------
T ss_pred HHHHHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhhcccccc--cc-------c------------------
Confidence 678889999899999988744 34589999999999988874222111 22 0
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEe
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMID 215 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiE 215 (299)
..+.++. ++.++..-++||+.+++=
T Consensus 74 ---------~~st~~~---i~~a~~a~~~Ga~~~~~~ 98 (293)
T d1w3ia_ 74 ---------GLNLDDA---IRLAKLSKDFDIVGIASY 98 (293)
T ss_dssp ---------CSCHHHH---HHHHHHGGGSCCSEEEEE
T ss_pred ---------cchhhhh---hhhhhhhhhhcccccccc
Confidence 0124556 888899999999998763
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=80.35 E-value=1.3 Score=36.77 Aligned_cols=52 Identities=8% Similarity=-0.102 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccC--------------ChhHHHHHHHHHHHcCCcccceeee
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSLEI--------------PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i--------------~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
..+++.++.+|++||++|-+.-..... ..+...++++.|.+.|++|+.++..
T Consensus 39 ~~~~~~l~~~k~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vi~~l~~ 104 (370)
T d1rh9a1 39 IKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVN 104 (370)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHHCCCeEEEECCccCccCcccCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEeccc
Confidence 368999999999999999985322211 1233457899999999999988864
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=80.18 E-value=3.4 Score=34.64 Aligned_cols=57 Identities=12% Similarity=0.271 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 022296 73 EEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (299)
Q Consensus 73 ~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (299)
++.++..++++| ++..+. +++...+..+.+-+-|+.+|||.-- .+...+.|+.+++.
T Consensus 5 ~~~~~~l~~~~iipvlr~~--------~~~~~~~~~~al~~~Gi~~iEitl~-----~~~a~~~I~~l~~~ 62 (212)
T d1vhca_ 5 QQIIEKLRELKIVPVIALD--------NADDILPLADTLAKNGLSVAEITFR-----SEAAADAIRLLRAN 62 (212)
T ss_dssp HHHHHHHHHHCEEEEECCS--------SGGGHHHHHHHHHHTTCCEEEEETT-----STTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEEeCC--------CHHHHHHHHHHHHHCCCCEEEEeCC-----ChhHHHHHHHHHhc
Confidence 456777788888 454553 2235566778888999999999754 45667899988763
|