Citrus Sinensis ID: 022298

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MSVVSSSPILSPSSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQKKRKSEKKIPIVT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEcccccccccccccHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHccccccEEEEEEcccccccHHHHHccccccccccccccEEEEEEcccccEEEEEEccccccccccccccEEccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccccccccccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHccccccccccccccccccccccccEEEccccccccccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEHcccHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHccccccccEEEEEEccccccccccccHHHHHHHHHccccEEEEc
Coil and Loop (DISEMBL)
msvvssspilspssgrlssnsstnlplfstsftkpisqkryplIVFSyksgtgltseDKKELLKrygldpdeflsepspktrrrkegrgsklvvsdeksqeerTTHRLLQVLGGKArrkkllspkgmdvrpmmEVVKGAAFDILqsaggcpaslrpgrwldlysgtgsVGIEAISRGCsevhfvemdpwvvsnvlipnlewtgfldvssIHTVRVETFLERAEqfvgkdgpfdymsvtppytavdyEVVEYplrtdmldtcgclvkikdrrfgrthlaiygpdwaqkkrksekkipivt
Flexible Loop (DISEMBL)
msvvssspilspssgrlssnsstNLPLFStsftkpisqkryPLIVFSyksgtgltsedKKELLKrygldpdeflsepspktrrrkegrgsklvvsdeksqeertthrllqvlggkarrkkllspkgmdvrpMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEqfvgkdgpfdymsvTPPYTAVDYEVVEYPLRTDMLDTCGCLVkikdrrfgrthlaiygpdwaqkkrksekkipivt
Low Complexity Region (SEG)
MsvvssspilspssgrlssnssTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQKKRKSEKKIPIVT
Disordered region (IsUnstruct)
*******************************FTKPISQKRYPLIVFSYKSG*******************************************************************************PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA**************
Disordered Region (DISOPRED)
************SSG************************************************KRYGL*****************************************QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDW***********PIVT
Disordered Region (DISEMBL)
*********************STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLS*****************************THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDW***************
Disordered Region (DISPRO)
**********SPSSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDE*********************************HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQKKRKSEKKIPIVT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVVSSSPILSPSSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQKKRKSEKKIPIVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
O34331	184	Putative rRNA methyltrans	yes	no	0.541	0.880	0.257	1e-07
P0ADX9	198	Ribosomal RNA small subun	N/A	no	0.394	0.595	0.268	2e-05
P0ADY0	198	Ribosomal RNA small subun	yes	no	0.394	0.595	0.268	2e-05
Q89B29	196	Ribosomal RNA small subun	yes	no	0.387	0.591	0.211	0.0003
Q9ZD05	236	Uncharacterized methylase	yes	no	0.274	0.347	0.273	0.0005

>sp|O34331|YLBH_BACSU Putative rRNA methyltransferase YlbH OS=Bacillus subtilis (strain 168) GN=ylbH PE=3 SV=2

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 28/190 (14%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++V+ G  + + L +  G   RP  + VK + F+++            GR LDL++G+G 
Sbjct: 1   MRVISGSKKGRSLKAVAGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
           +GIEA+SRG     FV+ D   +  V   NL+       + ++    E  L  A +   +
Sbjct: 55  LGIEALSRGFEHCIFVDRDFKAIQTVK-SNLKTLELTKHAQVYRNDAERALHAAAK---R 110

Query: 229 DGPFDYMSVTPPY---------TAVD---------YEVVEYPLRTDMLDTCGCLVKIKDR 270
           +  F  + + PPY         T +D         + V E+    ++ +T G LV  +  
Sbjct: 111 ETGFRGIFLDPPYKEQKLKALLTLIDEYQMLEEDGFIVAEHDREVELPETVGDLVMTRKE 170

Query: 271 RFGRTHLAIY 280
            +G T +AIY
Sbjct: 171 TYGLTGVAIY 180

May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|P0ADX9|RSMD_ECOLI Ribosomal RNA small subunit methyltransferase D OS=Escherichia coli (strain K12) GN=rsmD PE=1 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 16/134 (11%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P    +RP  + V+   F+ L         +   + LD ++G+G+
Sbjct: 12  IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 65

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
           +G+EA+SR  +    +EMD   VS  LI NL        +++           A  F+ +
Sbjct: 66  LGLEALSRYAAGATLIEMDR-AVSQQLIKNL--------ATLKAGNARVVNSNAMSFLAQ 116

Query: 229 DG-PFDYMSVTPPY 241
            G P + + V PP+
Sbjct: 117 KGTPHNIVFVDPPF 130

Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle.

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 1

>sp|P0ADY0|RSMD_ECOL6 Ribosomal RNA small subunit methyltransferase D OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmD PE=3 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 16/134 (11%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P    +RP  + V+   F+ L         +   + LD ++G+G+
Sbjct: 12  IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 65

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
           +G+EA+SR  +    +EMD   VS  LI NL        +++           A  F+ +
Sbjct: 66  LGLEALSRYAAGATLIEMDR-AVSQQLIKNL--------ATLKAGNARVVNSNAMSFLAQ 116

Query: 229 DG-PFDYMSVTPPY 241
            G P + + V PP+
Sbjct: 117 KGTPHNIVFVDPPF 130

Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 1

>sp|Q89B29|RSMD_BUCBP Ribosomal RNA small subunit methyltransferase D OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=rsmD PE=3 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 66/137 (48%), Gaps = 21/137 (15%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           +Q++ GK +  ++      ++RP    ++   F+ + +       ++    LD +SG+G+
Sbjct: 13  IQIISGKYKNSRIPIINTKNLRPTTNYIRETLFNWISNE-----KIKKSHCLDCFSGSGA 67

Query: 169 VGIEAISRGCSEVHFVEMDP---WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
           +GIEA+SR       +E+     + +  +LI        L ++++H +R  T      Q+
Sbjct: 68  LGIEAVSRYALSSTCIEIQKKAIFFLKKILIK-------LSITNVHVIRANTI-----QW 115

Query: 226 VGK-DGPFDYMSVTPPY 241
           + K +  +D + + PP+
Sbjct: 116 LKKPNKSYDIIFLDPPF 132

Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle.

Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 1

>sp|Q9ZD05|Y545_RICPR Uncharacterized methylase RP545 OS=Rickettsia prowazekii (strain Madrid E) GN=RP545 PE=4 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASL--RPGRWLDLYSG 165
           +L+++ GK + + + + + +  RP    +K A F IL S       L     + LDL++G
Sbjct: 1   MLKIISGKYKNQIIPTAQNIKYRPSTGKLKEAIFSILTSGEFIGNKLFNENTQILDLFAG 60

Query: 166 TGSVGIEAISRGCSEVHFVEMDPW 189
           +GS+  E++SRG      +++D +
Sbjct: 61  SGSLAFESLSRGAGFATLIDIDTY 84

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
225452620	331	PREDICTED: putative rRNA methyltransfera	0.976	0.882	0.704	1e-117
147800028	408	hypothetical protein VITISV_001039 [Viti	0.976	0.715	0.704	1e-117
224060033	321	predicted protein [Populus trichocarpa]	0.956	0.890	0.685	1e-113
449461901	315	PREDICTED: putative rRNA methyltransfera	0.872	0.828	0.683	1e-104
449519687	313	PREDICTED: putative rRNA methyltransfera	0.872	0.833	0.683	1e-104
297818452	312	hypothetical protein ARALYDRAFT_905108 [	0.949	0.910	0.617	1e-98
22331389	314	methyltransferase [Arabidopsis thaliana]	0.809	0.770	0.696	8e-97
356550476	311	PREDICTED: putative rRNA methyltransfera	0.943	0.906	0.649	6e-95
255552778	268	conserved hypothetical protein [Ricinus	0.698	0.779	0.727	2e-92
388508868	325	unknown [Medicago truncatula]	0.809	0.744	0.659	4e-89

>gi|225452620|ref|XP_002281501.1| PREDICTED: putative rRNA methyltransferase ylbH [Vitis vinifera] gi|296087748|emb|CBI35004.3| unnamed protein product [Vitis vinifera]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/322 (70%), Positives = 251/322 (77%), Gaps = 30/322 (9%)

Query: 4   VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
           VSSS I+SP    + +N   SS +LPLFS  F K  ++K   +++ S KS  GL +E+KK
Sbjct: 3   VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60

Query: 61  ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
            LL+RYG D +EF+SEPSPKT RRRKE    G+G +  VS E  +  RTTH+LLQVLGGK
Sbjct: 61  LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118

Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
           ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178

Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235
           RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QFVGKD  FDY+
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQFVGKDQSFDYI 238

Query: 236 SVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHL 277
           SVTPPYT VDYE                  VVEYPLR DMLD+CGCLVKI DRRFGRTHL
Sbjct: 239 SVTPPYTEVDYEVLMGQISSSALVGEDTFIVVEYPLRIDMLDSCGCLVKIADRRFGRTHL 298

Query: 278 AIYGPDWAQKKRKSEKKIPIVT 299
           AIYGP WAQK+RKSEK  P+V 
Sbjct: 299 AIYGPKWAQKRRKSEKSFPVVA 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800028|emb|CAN74970.1| hypothetical protein VITISV_001039 [Vitis vinifera]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/322 (70%), Positives = 251/322 (77%), Gaps = 30/322 (9%)

Query: 4   VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
           VSSS I+SP    + +N   SS +LPLFS  F K  ++K   +++ S KS  GL +E+KK
Sbjct: 3   VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60

Query: 61  ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
            LL+RYG D +EF+SEPSPKT RRRKE    G+G +  VS E  +  RTTH+LLQVLGGK
Sbjct: 61  LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118

Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
           ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178

Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235
           RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QFVGKD  FDY+
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQFVGKDQSFDYI 238

Query: 236 SVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHL 277
           SVTPPYT VDYE                  VVEYPLR DMLD+CGCLVKI DRRFGRTHL
Sbjct: 239 SVTPPYTEVDYEVLMGQISSSALVGEDTFIVVEYPLRIDMLDSCGCLVKIADRRFGRTHL 298

Query: 278 AIYGPDWAQKKRKSEKKIPIVT 299
           AIYGP WAQK+RKSEK  P+V 
Sbjct: 299 AIYGPKWAQKRRKSEKSFPVVA 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060033|ref|XP_002300031.1| predicted protein [Populus trichocarpa] gi|222847289|gb|EEE84836.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/321 (68%), Positives = 251/321 (78%), Gaps = 35/321 (10%)

Query: 3   VVSSSPILSP-----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYK-SGTGLTS 56
            +SSSPI SP     ++   SS+S  NL LF+   +KP + +   +++ SYK SG GLTS
Sbjct: 2   AISSSPIASPLGININTKLASSSSFPNLALFNLP-SKP-TNRISTIVLSSYKNSGNGLTS 59

Query: 57  EDKKELLKRYGLDPDEFLSEPSP-----KTRRRKE----GRGSKLVVSDEKSQEERTTHR 107
           EDKK L ++YGLDP++F S+PS      KT+RRKE    GRG ++   D + + +RTTHR
Sbjct: 60  EDKKALFEKYGLDPNQFPSQPSSSSPSLKTKRRKEIQNPGRGKQVREEDGEDKPQRTTHR 119

Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
           LLQVLGGKA+RKKLLSPKGMDVRPMMEVVKG+AFDILQ+AGGCPASLRPGRWLDLYSGTG
Sbjct: 120 LLQVLGGKAKRKKLLSPKGMDVRPMMEVVKGSAFDILQAAGGCPASLRPGRWLDLYSGTG 179

Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
           SVGIEAISRGCSEVHFVEMDPWVVSNVL PNLE TGFLDVS IHTVRVE+FLERAEQFVG
Sbjct: 180 SVGIEAISRGCSEVHFVEMDPWVVSNVLQPNLECTGFLDVSVIHTVRVESFLERAEQFVG 239

Query: 228 KDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
           +D  FD++SVTPPYT VDY                   VVEYPLRTDMLD+CGCLVKI D
Sbjct: 240 QDSAFDFISVTPPYTQVDYGILMDQISKSPIVGEDTFIVVEYPLRTDMLDSCGCLVKIND 299

Query: 270 RRFGRTHLAIYGPDWAQKKRK 290
           RRFGRTHLAIYGP+WAQKKRK
Sbjct: 300 RRFGRTHLAIYGPEWAQKKRK 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461901|ref|XP_004148680.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis sativus]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/284 (68%), Positives = 218/284 (76%), Gaps = 23/284 (8%)

Query: 22  STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
           S N PL S   +KP +     +IV SYKSG    +E KK+LL++YGLDP+EFLSEPS   
Sbjct: 25  SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83

Query: 82  RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
           RR  RK G+G ++   D K Q  R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84  RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141

Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
           AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201

Query: 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE------------ 247
           E TGF DVS IHT+RVE F+ERA+Q +G + PFDY+SVTPPYT VDY             
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQLIGTERPFDYISVTPPYTQVDYGVLMGQLSKSALV 261

Query: 248 ------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA 285
                 VVEYPLRTDML++CGCL KI DRRFGRTHLAIYGP WA
Sbjct: 262 GEDTFIVVEYPLRTDMLESCGCLTKITDRRFGRTHLAIYGPKWA 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519687|ref|XP_004166866.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis sativus]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/284 (68%), Positives = 218/284 (76%), Gaps = 23/284 (8%)

Query: 22  STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
           S N PL S   +KP +     +IV SYKSG    +E KK+LL++YGLDP+EFLSEPS   
Sbjct: 25  SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83

Query: 82  RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
           RR  RK G+G ++   D K Q  R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84  RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141

Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
           AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201

Query: 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE------------ 247
           E TGF DVS IHT+RVE F+ERA+Q +G + PFDY+SVTPPYT VDY             
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQLIGTERPFDYISVTPPYTQVDYGVLMGQLSKSALV 261

Query: 248 ------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA 285
                 VVEYPLRTDML++CGCL KI DRRFGRTHLAIYGP WA
Sbjct: 262 GEDTFIVVEYPLRTDMLESCGCLTKITDRRFGRTHLAIYGPKWA 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818452|ref|XP_002877109.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp. lyrata] gi|297322947|gb|EFH53368.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp. lyrata]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 197/319 (61%), Positives = 223/319 (69%), Gaps = 35/319 (10%)

Query: 1   MSVVSSSPILSP----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTS 56
           M+V+ SSPI+SP     +  +S +S   + LF  S    I   R  ++     SGTGL S
Sbjct: 1   MAVLLSSPIVSPLGINKNLGVSYSSFPQIHLFKVSTPLRI---RKSVVSSRKNSGTGLAS 57

Query: 57  EDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE------RTTHRLLQ 110
           EDKK LL+RYG D ++     S K RR++E    K+   + +  EE      RTTHRLLQ
Sbjct: 58  EDKKLLLERYGYDANDDFGSQSKKARRKEE----KMSGRNGQQAEEVVVVQPRTTHRLLQ 113

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           VL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSGTGSVG
Sbjct: 114 VLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSGTGSVG 173

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
           IEAISRGCSE HFVEMDPWVV+NVL PNLE TGF+D S IHT RVE FLERA++ VGKDG
Sbjct: 174 IEAISRGCSEAHFVEMDPWVVTNVLQPNLEHTGFVDTSVIHTARVENFLERADKLVGKDG 233

Query: 231 PFDYMSVTPPYTAVDYEV------------------VEYPLRTDMLDTCGCLVKIKDRRF 272
            FDY+SVTPPY  VDYEV                  VEYP RT MLD+CGCL K+ DRRF
Sbjct: 234 AFDYISVTPPYMEVDYEVLMDQIAKSPAIGENTFILVEYPSRTTMLDSCGCLEKMTDRRF 293

Query: 273 GRTHLAIYGPDWAQKKRKS 291
           GRTHLAIYGP WAQK RKS
Sbjct: 294 GRTHLAIYGPKWAQKPRKS 312

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331389|ref|NP_189487.2| methyltransferase [Arabidopsis thaliana] gi|9294581|dbj|BAB02862.1| unnamed protein product [Arabidopsis thaliana] gi|18389226|gb|AAL67056.1| unknown protein [Arabidopsis thaliana] gi|23296698|gb|AAN13150.1| unknown protein [Arabidopsis thaliana] gi|332643927|gb|AEE77448.1| methyltransferase [Arabidopsis thaliana]

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 184/264 (69%), Positives = 199/264 (75%), Gaps = 22/264 (8%)

Query: 49  KSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKE---GRGSKLVVSDEKSQEERTT 105
            SGTGL SEDKK LL+RYG D ++     S K RR++E   GR S+ V       + RTT
Sbjct: 52  NSGTGLASEDKKLLLERYGYDANDDFGSQSKKARRKEEKMSGRNSQQVEE-VVVVQPRTT 110

Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
           HRLLQVL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSG
Sbjct: 111 HRLLQVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSG 170

Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
           TGSVGIEAISRGCSE HFVEMDPWVVSNVL PNLE TGF+D S IHT RVE FLERA++ 
Sbjct: 171 TGSVGIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTARVENFLERADKL 230

Query: 226 VGKDGPFDYMSVTPPYTAVDYEV------------------VEYPLRTDMLDTCGCLVKI 267
           VGKDG FDY+SVTPPY  VDYEV                  VEYP RT MLD+CGCL K+
Sbjct: 231 VGKDGVFDYISVTPPYMEVDYEVLMDQIAKSPAIGENTFILVEYPSRTTMLDSCGCLEKM 290

Query: 268 KDRRFGRTHLAIYGPDWAQKKRKS 291
            DRRFGRTHLAIYGP WAQK RKS
Sbjct: 291 TDRRFGRTHLAIYGPKWAQKPRKS 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550476|ref|XP_003543613.1| PREDICTED: putative rRNA methyltransferase ylbH-like [Glycine max]

 Score =  353 bits (905), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 200/308 (64%), Positives = 223/308 (72%), Gaps = 26/308 (8%)

Query: 9   ILSPSSGRLSSNSSTNL--PLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRY 66
           +L P+   L  N+ T+   P F        S    PL V   KSG GL SEDKK LL++Y
Sbjct: 4   LLPPTFSPLLLNTKTDFGSPPFPLLTLSSSSPTSSPLFVSYTKSGNGLASEDKKILLEKY 63

Query: 67  G--LDPDEFLSEPSPKTRRRKEG---RGSKLVVSD-EKSQEERTTHRLLQVLGGKARRKK 120
           G  +D DE+ S+ S K++RRKE    RG K V    E  +  R TH+LLQVLGG ARR K
Sbjct: 64  GYDIDADEYFSQSSSKSKRRKEQPRRRGGKQVQDPPEDPKPPRVTHKLLQVLGGTARRVK 123

Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE 180
           LLSPKGMDVRPMMEVVKGAAFDILQ+AGGCPA+LRPGRWLDLYSGTGSVGIEA+SRGCS+
Sbjct: 124 LLSPKGMDVRPMMEVVKGAAFDILQAAGGCPAALRPGRWLDLYSGTGSVGIEALSRGCSQ 183

Query: 181 VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240
           VHFVEMDPWVVS+VL PNLE TGFLD S IHTVRVE F ERAEQFVG  GPFDY+SVTPP
Sbjct: 184 VHFVEMDPWVVSDVLRPNLEETGFLDASVIHTVRVEKFFERAEQFVGNSGPFDYISVTPP 243

Query: 241 YTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 282
           YT VDY                   VVEYPL+TDMLD+CG LVKI DRRFGRT LAIYGP
Sbjct: 244 YTQVDYGVLMRQISESSLIGENTFIVVEYPLKTDMLDSCGSLVKITDRRFGRTLLAIYGP 303

Query: 283 DWAQKKRK 290
            W+QKKR+
Sbjct: 304 TWSQKKRR 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552778|ref|XP_002517432.1| conserved hypothetical protein [Ricinus communis] gi|223543443|gb|EEF44974.1| conserved hypothetical protein [Ricinus communis]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/231 (72%), Positives = 188/231 (81%), Gaps = 22/231 (9%)

Query: 80  KTRRRKEGRGS---KLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVV 136
           +++R+KEG+ +   K VV++E ++  RTTHRLLQV GGKA+RKKLLSP GMDVRPMMEVV
Sbjct: 18  RSKRKKEGKNAGKGKQVVAEE-AKPPRTTHRLLQVFGGKAKRKKLLSPMGMDVRPMMEVV 76

Query: 137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196
           KG AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 
Sbjct: 77  KGCAFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLQ 136

Query: 197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE--------- 247
           PNLE TGFLDVS +HTVRVE FLERAEQF+G +  FD++SVTPPY  V+Y          
Sbjct: 137 PNLESTGFLDVSVVHTVRVENFLERAEQFIGSNRTFDFISVTPPYMEVNYGTLMDQVSKS 196

Query: 248 ---------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQKKR 289
                    VVEYPLRT+MLD CG L+KI DRRFGRTHLAIYGP WAQKKR
Sbjct: 197 ALVGEDTFIVVEYPLRTEMLDACGSLIKIADRRFGRTHLAIYGPKWAQKKR 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508868|gb|AFK42500.1| unknown [Medicago truncatula]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 176/267 (65%), Positives = 199/267 (74%), Gaps = 25/267 (9%)

Query: 51  GTGLTSEDKKELLKR--YGLDPDEFLSEPSPKTR----RRKEGRGSKLVVSDE-KSQEER 103
           G GL SE+KK LL+R  Y +D D++  + S         +++ RG K V     + +  R
Sbjct: 54  GNGLASEEKKILLERDGYDVDADDYFPQSSSPKSKRKKEQQKTRGGKQVQDPPVEPKPPR 113

Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
           TTH+LLQV+GG ARR KLLSPK MDVRPMMEVVKGAAFDILQ+AGG PASLRPGRWLDLY
Sbjct: 114 TTHKLLQVIGGTARRTKLLSPKSMDVRPMMEVVKGAAFDILQAAGGSPASLRPGRWLDLY 173

Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
           SGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNLE TGF+D S IHTVRVE F ERAE
Sbjct: 174 SGTGSVGIEALSRGCSEVHFVEMDPWVVSDVLRPNLEVTGFIDDSVIHTVRVEKFFERAE 233

Query: 224 QFVGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLV 265
           QFVG +  FDY+SVTPPY  VDY                   VVEYPL+TDML++CG LV
Sbjct: 234 QFVGNNDTFDYISVTPPYAEVDYVVLMRVISESPFVGDDTFIVVEYPLKTDMLESCGPLV 293

Query: 266 KIKDRRFGRTHLAIYGPDWAQKKRKSE 292
           KI DRRFGRT LAIYGP WAQKKRKS+
Sbjct: 294 KITDRRFGRTLLAIYGPTWAQKKRKSK 320

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2088947	314	AT3G28460 [Arabidopsis thalian	0.685	0.652	0.723	2.1e-92
UNIPROTKB|Q74DS1	187	GSU1244 "DNA methyltransferase	0.421	0.673	0.375	6.9e-15
TIGR_CMR|GSU_1244	187	GSU_1244 "methyltransferase, p	0.421	0.673	0.375	6.9e-15
TIGR_CMR|DET_0189	192	DET_0189 "methyltransferase, p	0.404	0.630	0.300	2.5e-11
UNIPROTKB|Q2GEK0	198	NSE_0201 "Putative methyltrans	0.408	0.616	0.308	7.7e-10
TIGR_CMR|NSE_0201	198	NSE_0201 "putative methyltrans	0.408	0.616	0.308	7.7e-10
UNIPROTKB|Q3AC42	184	CHY_1460 "Putative methyltrans	0.508	0.826	0.295	1.3e-09
TIGR_CMR|CHY_1460	184	CHY_1460 "putative methyltrans	0.508	0.826	0.295	1.3e-09
UNIPROTKB|Q2GHP9	183	ECH_0211 "Putative methyltrans	0.411	0.672	0.288	2.8e-09
TIGR_CMR|ECH_0211	183	ECH_0211 "putative methyltrans	0.411	0.672	0.288	2.8e-09

TAIR|locus:2088947 AT3G28460 [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 2.1e-92, Sum P(2) = 2.1e-92
 Identities = 152/210 (72%), Positives = 168/210 (80%)

Query:    44 IVFSYK-SGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKE---GRGSKLVVSDEKS 99
             +V S K SGTGL SEDKK LL+RYG D ++     S K RR++E   GR S+ V  +   
Sbjct:    46 VVSSRKNSGTGLASEDKKLLLERYGYDANDDFGSQSKKARRKEEKMSGRNSQQV-EEVVV 104

Query:   100 QEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW 159
              + RTTHRLLQVL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRW
Sbjct:   105 VQPRTTHRLLQVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRW 164

Query:   160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
             LDLYSGTGSVGIEAISRGCSE HFVEMDPWVVSNVL PNLE TGF+D S IHT RVE FL
Sbjct:   165 LDLYSGTGSVGIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTARVENFL 224

Query:   220 ERAEQFVGKDGPFDYMSVTPPYTAVDYEVV 249
             ERA++ VGKDG FDY+SVTPPY  VDYEV+
Sbjct:   225 ERADKLVGKDGVFDYISVTPPYMEVDYEVL 254

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0031167 "rRNA methylation" evidence=IEA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

UNIPROTKB|Q74DS1 GSU1244 "DNA methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 50/133 (37%), Positives = 76/133 (57%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++V+GG AR ++L +P+G  VRP  + +K A F+IL S           R LDL++GTG+
Sbjct:     1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
             +GIEA+SRGCSE  FV+     V+ V+  NL+  GF D + I      T ++  E+   +
Sbjct:    58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARIIARDALTAIDYLER---E 113

Query:   229 DGPFDYMSVTPPY 241
                F  + + PPY
Sbjct:   114 GASFRLVMLDPPY 126

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1244 GSU_1244 "methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 50/133 (37%), Positives = 76/133 (57%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++V+GG AR ++L +P+G  VRP  + +K A F+IL S           R LDL++GTG+
Sbjct:     1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
             +GIEA+SRGCSE  FV+     V+ V+  NL+  GF D + I      T ++  E+   +
Sbjct:    58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARIIARDALTAIDYLER---E 113

Query:   229 DGPFDYMSVTPPY 241
                F  + + PPY
Sbjct:   114 GASFRLVMLDPPY 126

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

TIGR_CMR|DET_0189 DET_0189 "methyltransferase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 158 (60.7 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 40/133 (30%), Positives = 72/133 (54%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++++ G A+ K ++ P+    RP  E+V+GA   +L++     + +     LD+YSG+GS
Sbjct:     1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAEDWSEV-----LDIYSGSGS 55

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
             +G+EA+SRG   V FVE +     +++  NLE  G    + ++ + V     +A   +GK
Sbjct:    56 LGLEALSRGAGHVDFVEHER-ACCDIIKQNLETIGCAGQAHVYCLDVP----KAMSLLGK 110

Query:   229 DGPFDYMSVTPPY 241
                +D +   PPY
Sbjct:   111 Q--YDVILADPPY 121

GO:0008152 "metabolic process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|Q2GEK0 NSE_0201 "Putative methyltransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 145 (56.1 bits), Expect = 7.7e-10, P = 7.7e-10
 Identities = 41/133 (30%), Positives = 72/133 (54%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++V+ GK + +K+   KG+++RP M  V+ A F+I+  A           +LDL++GTGS
Sbjct:     1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEETHFLDLFTGTGS 60

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
             V IEA+SRG + V  +++D    +  +  NLE     D  ++    +   + + E+  GK
Sbjct:    61 VSIEALSRGFASVTAIDID----TRCIYANLEKMAIHDKITV----ISRDIVKLEES-GK 111

Query:   229 DGPFDYMSVTPPY 241
                +D + + PPY
Sbjct:   112 R--YDVVFMDPPY 122

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|NSE_0201 NSE_0201 "putative methyltransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 145 (56.1 bits), Expect = 7.7e-10, P = 7.7e-10
 Identities = 41/133 (30%), Positives = 72/133 (54%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++V+ GK + +K+   KG+++RP M  V+ A F+I+  A           +LDL++GTGS
Sbjct:     1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEETHFLDLFTGTGS 60

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
             V IEA+SRG + V  +++D    +  +  NLE     D  ++    +   + + E+  GK
Sbjct:    61 VSIEALSRGFASVTAIDID----TRCIYANLEKMAIHDKITV----ISRDIVKLEES-GK 111

Query:   229 DGPFDYMSVTPPY 241
                +D + + PPY
Sbjct:   112 R--YDVVFMDPPY 122

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|Q3AC42 CHY_1460 "Putative methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 143 (55.4 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 49/166 (29%), Positives = 81/166 (48%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++++ G AR +KL++PKG+  RP  + VK A F+IL       A +     LD ++GTG+
Sbjct:     1 MRIITGDARGRKLIAPKGLKTRPTSDRVKEAMFNIL-GYRVIDAVV-----LDGFAGTGN 54

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
             +G+EA+SRG    +F+E D    S  L  N+E  G+ D +      +   L    +    
Sbjct:    55 LGLEALSRGAKFSYFIEADREAFS-CLRRNIENLGYGDRAKAILGDIFKILPHINE---- 109

Query:   229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVKIKDRRFG 273
                FD + + PPY    +   V   L+  +L   G +V    ++ G
Sbjct:   110 --KFDLIFLDPPYGYGFEERAVLTILQLGLLKETGLIVVETAKKIG 153

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1460 CHY_1460 "putative methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 143 (55.4 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 49/166 (29%), Positives = 81/166 (48%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++++ G AR +KL++PKG+  RP  + VK A F+IL       A +     LD ++GTG+
Sbjct:     1 MRIITGDARGRKLIAPKGLKTRPTSDRVKEAMFNIL-GYRVIDAVV-----LDGFAGTGN 54

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
             +G+EA+SRG    +F+E D    S  L  N+E  G+ D +      +   L    +    
Sbjct:    55 LGLEALSRGAKFSYFIEADREAFS-CLRRNIENLGYGDRAKAILGDIFKILPHINE---- 109

Query:   229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVKIKDRRFG 273
                FD + + PPY    +   V   L+  +L   G +V    ++ G
Sbjct:   110 --KFDLIFLDPPYGYGFEERAVLTILQLGLLKETGLIVVETAKKIG 153

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|Q2GHP9 ECH_0211 "Putative methyltransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 140 (54.3 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 39/135 (28%), Positives = 73/135 (54%)

Query:   108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
             +L++  GK R +++ S K +  RP M +++ + F+I+ S      S++  + LDL+ G+G
Sbjct:     1 MLRITSGKYRGRRIFSDKLLSARPAMSIIRESIFNIILSR----MSIQGCKILDLFCGSG 56

Query:   168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
             S+  EA+SRG   V  V+++ + +S V   + E+ G ++  ++    VE      +Q+  
Sbjct:    57 SLSFEALSRGAESVLLVDINHYNLSLVKRTS-EYLGVVNNVTLMCCDVEKLPLATDQY-- 113

Query:   228 KDGPFDYMSVTPPYT 242
                  D + V PPYT
Sbjct:   114 -----DIVFVDPPYT 123

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_0211 ECH_0211 "putative methyltransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 140 (54.3 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 39/135 (28%), Positives = 73/135 (54%)

Query:   108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
             +L++  GK R +++ S K +  RP M +++ + F+I+ S      S++  + LDL+ G+G
Sbjct:     1 MLRITSGKYRGRRIFSDKLLSARPAMSIIRESIFNIILSR----MSIQGCKILDLFCGSG 56

Query:   168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
             S+  EA+SRG   V  V+++ + +S V   + E+ G ++  ++    VE      +Q+  
Sbjct:    57 SLSFEALSRGAESVLLVDINHYNLSLVKRTS-EYLGVVNNVTLMCCDVEKLPLATDQY-- 113

Query:   228 KDGPFDYMSVTPPYT 242
                  D + V PPYT
Sbjct:   114 -----DIVFVDPPYT 123

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.171	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_I0836 hypothetical protein (321 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
pfam03602	183	pfam03602, Cons_hypoth95, Conserved hypothetical p	1e-51
COG0742	187	COG0742, COG0742, N6-adenine-specific methylase [D	3e-31
TIGR00095	190	TIGR00095, TIGR00095, RNA methyltransferase, RsmD	2e-21
PRK10909	199	PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferas	1e-07

>gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95

 Score =  167 bits (425), Expect = 1e-51
 Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 26/191 (13%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GGKAR +KL  P G   RP  + V+ A F+IL         +   R LDL++G+G+
Sbjct: 1   MRIIGGKARGRKLKVPPGPGTRPTTDRVREALFNILAPY----FEIGGARVLDLFAGSGA 56

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
           +G+EA+SRG + V FVE D   V+  L  NLE    L +     V          +  GK
Sbjct: 57  LGLEALSRGAASVVFVEKDKKAVA-TLKENLE---ALGLEGETAVLRNDAARALLRLAGK 112

Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
             PFD + + PPY     E                  VVE     ++ +    L   +++
Sbjct: 113 GPPFDLVFLDPPYAKGLIEEALELLAENGWLNPNALIVVETESDEELPEQPANLELHREK 172

Query: 271 RFGRTHLAIYG 281
           ++G+T LA+Y 
Sbjct: 173 KYGQTKLALYQ 183

Length = 183

>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]

 Score =  115 bits (289), Expect = 3e-31
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 30/190 (15%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           ++GGK + +KL +P G   RP  + V+ A F+IL      P  +   R LDL++G+G++G
Sbjct: 4   IIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILA-----PDEIEGARVLDLFAGSGALG 58

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
           +EA+SRG + V FVE D   V  +L  NL+  G    + +        L++     G   
Sbjct: 59  LEALSRGAARVVFVEKDRKAVK-ILKENLKALGLEGEARVLRNDALRALKQL----GTRE 113

Query: 231 PFDYMSVTPPYTAVDYE--------------------VVEYPLRTDMLDTCGCLVKIKDR 270
           PFD + + PPY     +                    VVE+    ++ +        +++
Sbjct: 114 PFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDVELPELPANFELHREK 173

Query: 271 RFGRTHLAIY 280
           ++G+T L  Y
Sbjct: 174 KYGQTKLTFY 183

Length = 187

>gnl|CDD|188022 TIGR00095, TIGR00095, RNA methyltransferase, RsmD family

 Score = 89.0 bits (221), Expect = 2e-21
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 30/191 (15%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P G   RP  + V+ + F+IL+        +    +LDL++G+G+
Sbjct: 10  IRIIGGQYRGRKLKVPPGPSTRPTTDRVRESLFNILR------PDIVGAHFLDLFAGSGA 63

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
           +G+EA+SRG +   FVE D   V+  L  NL     L  S      V     RA  F+  
Sbjct: 64  LGLEALSRGAASAVFVEQDR-KVAQTLKENLS---TLKKSG-EQATVLNDAVRALLFLAK 118

Query: 228 KDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
           K  PFD + + PP+     E                  VVEY    ++         ++ 
Sbjct: 119 KQTPFDIIYLDPPFNRGLLEALLELLGENKWLNPKGLIVVEYDRENELPTVPETWSLLRQ 178

Query: 270 RRFGRTHLAIY 280
           + +G++ L +Y
Sbjct: 179 KVYGQSALRLY 189

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases [Protein synthesis, tRNA and rRNA base modification]. Length = 190

>gnl|CDD|236793 PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 16/134 (11%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P    +RP  + V+   F+ L         +   R LD ++G+G+
Sbjct: 13  IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLA------PVIVDARCLDCFAGSGA 66

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
           +G+EA+SR  +    +EMD   V+  LI NL     L   +   V           F+ +
Sbjct: 67  LGLEALSRYAAGATLLEMDR-AVAQQLIKNL---ATLKAGNARVVNTNAL-----SFLAQ 117

Query: 229 DG-PFDYMSVTPPY 241
            G P + + V PP+
Sbjct: 118 PGTPHNVVFVDPPF 131

Length = 199

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	100.0
COG0742	187	N6-adenine-specific methylase [DNA replication, re	100.0
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	100.0
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	100.0
COG2890	280	HemK Methylase of polypeptide chain release factor	99.63
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.62
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.62
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.61
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.61
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.6
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.6
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.6
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.6
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.59
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.57
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.57
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.57
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.55
COG4123	248	Predicted O-methyltransferase [General function pr	99.55
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.53
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.5
KOG2904	328	consensus Predicted methyltransferase [General fun	99.49
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.49
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.49
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.46
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.46
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.45
PRK10742	250	putative methyltransferase; Provisional	99.44
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.44
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.43
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.43
PRK14967	223	putative methyltransferase; Provisional	99.42
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.4
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.37
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.37
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.36
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.36
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.36
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.35
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.35
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.35
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.34
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.34
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.33
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.33
PLN02672	1082	methionine S-methyltransferase	99.33
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.3
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.25
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.25
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.24
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.24
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.24
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.21
COG2520	341	Predicted methyltransferase [General function pred	99.21
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.19
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.19
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	99.18
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.18
PHA03412	241	putative methyltransferase; Provisional	99.17
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.15
PRK07402	196	precorrin-6B methylase; Provisional	99.14
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.11
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.09
PHA03411	279	putative methyltransferase; Provisional	99.07
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.05
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.03
PRK14968	188	putative methyltransferase; Provisional	99.03
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.02
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.0
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.0
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.0
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.0
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.98
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.96
KOG2730	263	consensus Methylase [General function prediction o	98.96
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.94
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.93
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.91
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.9
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.88
PRK00811	283	spermidine synthase; Provisional	98.88
PLN02476	278	O-methyltransferase	98.88
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.86
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.86
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.86
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.86
COG2521	287	Predicted archaeal methyltransferase [General func	98.84
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.8
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.77
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.76
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.75
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.74
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.74
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.73
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.73
PRK04457	262	spermidine synthase; Provisional	98.73
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.72
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.71
PRK11207	197	tellurite resistance protein TehB; Provisional	98.71
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.7
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.7
PRK03612	521	spermidine synthase; Provisional	98.7
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.7
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.69
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.64
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.64
PRK12335	287	tellurite resistance protein TehB; Provisional	98.63
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.62
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.61
PLN02244	340	tocopherol O-methyltransferase	98.6
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.59
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.58
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.58
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.56
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.55
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.55
PLN02366	308	spermidine synthase	98.55
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.54
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.54
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.53
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.53
COG4076	252	Predicted RNA methylase [General function predicti	98.5
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.48
PRK01581	374	speE spermidine synthase; Validated	98.48
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.47
KOG2671	421	consensus Putative RNA methylase [Replication, rec	98.47
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.47
COG4122	219	Predicted O-methyltransferase [General function pr	98.46
PLN02823	336	spermine synthase	98.46
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.46
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.45
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.45
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.44
PRK08317	241	hypothetical protein; Provisional	98.44
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.43
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.43
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.41
PRK04266	226	fibrillarin; Provisional	98.41
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.4
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.4
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.4
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.39
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.37
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.37
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.37
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.34
PRK04148	134	hypothetical protein; Provisional	98.33
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.32
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.32
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.31
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.31
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	98.3
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.29
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.29
PLN02490	340	MPBQ/MSBQ methyltransferase	98.28
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.28
PLN02336	475	phosphoethanolamine N-methyltransferase	98.28
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.27
PLN03075	296	nicotianamine synthase; Provisional	98.26
PRK05785	226	hypothetical protein; Provisional	98.25
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.23
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.21
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.21
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.2
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.19
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.17
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.16
COG3897	218	Predicted methyltransferase [General function pred	98.14
PRK06922	677	hypothetical protein; Provisional	98.13
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.13
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.13
PRK06202	232	hypothetical protein; Provisional	98.12
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.11
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.11
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.09
PHA01634	156	hypothetical protein	98.09
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.07
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.07
PTZ00146	293	fibrillarin; Provisional	98.07
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.06
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.06
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.06
TIGR03438	301	probable methyltransferase. This model represents	98.05
PLN02336	475	phosphoethanolamine N-methyltransferase	98.04
KOG1271	227	consensus Methyltransferases [General function pre	98.02
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.94
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.91
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.9
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.89
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.87
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.85
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.85
TIGR00438	188	rrmJ cell division protein FtsJ.	97.84
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.81
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.77
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	97.76
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.76
KOG1227	351	consensus Putative methyltransferase [General func	97.76
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	97.74
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.7
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.67
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.6
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.58
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.57
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.54
KOG2078	495	consensus tRNA modification enzyme [RNA processing	97.54
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.54
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.49
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.49
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.47
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.46
COG0286	489	HsdM Type I restriction-modification system methyl	97.46
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.37
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	97.35
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	97.34
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.3
PRK11524	284	putative methyltransferase; Provisional	97.29
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.26
PRK13699	227	putative methylase; Provisional	97.24
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.21
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.1
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.07
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.02
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.98
PRK10458	467	DNA cytosine methylase; Provisional	96.97
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.96
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.92
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	96.81
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.8
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.8
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.77
PF13679	141	Methyltransf_32: Methyltransferase domain	96.72
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.71
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	96.69
TIGR00497	501	hsdM type I restriction system adenine methylase (	96.64
COG1568	354	Predicted methyltransferases [General function pre	96.62
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.45
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.39
KOG4300	252	consensus Predicted methyltransferase [General fun	96.32
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.23
KOG2899	288	consensus Predicted methyltransferase [General fun	96.14
PRK00536	262	speE spermidine synthase; Provisional	96.02
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.99
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	95.8
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.72
KOG3010	261	consensus Methyltransferase [General function pred	95.72
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.55
COG2961	279	ComJ Protein involved in catabolism of external DN	95.53
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	95.44
COG1743	875	Adenine-specific DNA methylase containing a Zn-rib	94.97
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.86
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.77
KOG2912	419	consensus Predicted DNA methylase [Function unknow	94.55
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	94.39
COG0863	302	DNA modification methylase [DNA replication, recom	94.08
PRK11524	284	putative methyltransferase; Provisional	94.07
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	94.02
PRK13699	227	putative methylase; Provisional	93.91
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	93.83
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	93.5
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	93.43
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	93.21
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	93.09
COG3129	292	Predicted SAM-dependent methyltransferase [General	93.07
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	93.03
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	92.88
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	92.8
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	92.7
KOG2361	264	consensus Predicted methyltransferase [General fun	92.33
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	92.32
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	91.7
KOG2920	282	consensus Predicted methyltransferase [General fun	90.13
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	89.99
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	89.63
PLN02232	160	ubiquinone biosynthesis methyltransferase	87.88
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	87.53
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	87.53
KOG2352	482	consensus Predicted spermine/spermidine synthase [	87.49
KOG3201	201	consensus Uncharacterized conserved protein [Funct	87.23
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	85.29
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	85.09
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	84.92
TIGR00571	266	dam DNA adenine methylase (dam). All proteins in t	84.84
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	82.92
PRK10904	271	DNA adenine methylase; Provisional	82.35
COG3392	330	Adenine-specific DNA methylase [DNA replication, r	80.71

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=100.00  E-value=1.4e-43  Score=312.18  Aligned_cols=164  Identities=35%  Similarity=0.612  Sum_probs=133.7

Q ss_pred             EEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCH
Q 022298          109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP  188 (299)
Q Consensus       109 mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~  188 (299)
                      ||||+|+|+||+|.+|++..+|||+++|||++||+|+.. +    +++.+|||||||||++|+||+||||.+|++||.|+
T Consensus         1 mRIi~G~~kgr~l~~p~~~~~RPT~drvrealFniL~~~-~----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~   75 (183)
T PF03602_consen    1 MRIIGGKYKGRKLKTPKGDNTRPTTDRVREALFNILQPR-N----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR   75 (183)
T ss_dssp             EE--SSTTTT-EEE-TT--TS-SSSHHHHHHHHHHHHCH------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H
T ss_pred             CEEEeeecCCCEecCCCCCCcCCCcHHHHHHHHHHhccc-c----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH
Confidence            899999999999999999999999999999999999974 1    57999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCe-E------------------EE
Q 022298          189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY-E------------------VV  249 (299)
Q Consensus       189 ~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~-~------------------~v  249 (299)
                      +++ +.+++|++.++..++++++++|+..++....   ....+||+||+||||....+ .                  ++
T Consensus        76 ~a~-~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~  151 (183)
T PF03602_consen   76 KAI-KIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA---KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII  151 (183)
T ss_dssp             HHH-HHHHHHHHHHT-GGGEEEEESSHHHHHHHHH---HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred             HHH-HHHHHHHHHhCCCcceeeeccCHHHHHHhhc---ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence            998 9999999999998889999999998886542   23579999999999998753 2                  39


Q ss_pred             EecCCCCCCCCCCCeEEEEEeeecceEEEEee
Q 022298          250 EYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG  281 (299)
Q Consensus       250 E~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~  281 (299)
                      ||+.+++++..+.+|+++++|+||+|.++||+
T Consensus       152 E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~  183 (183)
T PF03602_consen  152 EHSKKEDLPESPGNWELIKERKYGDTKLSFYQ  183 (183)
T ss_dssp             EEETTSSS-SEETTEEEEEEEEETTEEEEEEE
T ss_pred             EecCCCCCccCCCCEEEEEEecCCCEEEEEEC
Confidence            99998888877888999999999999999995

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=100.00  E-value=1e-42  Score=305.97  Aligned_cols=165  Identities=30%  Similarity=0.533  Sum_probs=148.7

Q ss_pred             eEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCC
Q 022298          108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD  187 (299)
Q Consensus       108 ~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n  187 (299)
                      +||||+|+||||+|.+|++.++|||+|+|||++||||...     .+++.+|||||||||++|+||+||||.+|++||.|
T Consensus         1 ~mRIi~G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~-----~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~   75 (187)
T COG0742           1 QMRIIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPD-----EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKD   75 (187)
T ss_pred             CeEEEeccccCCcccCCCCCCcCCCchHHHHHHHHhcccc-----ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecC
Confidence            5899999999999999999999999999999999999872     16899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCeE--------------------
Q 022298          188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE--------------------  247 (299)
Q Consensus       188 ~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~~--------------------  247 (299)
                      .+++ ..+++|++.+++..+.+++..|+..++..+.    ..+.||+||+||||..+.+.                    
T Consensus        76 ~~a~-~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~----~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~i  150 (187)
T COG0742          76 RKAV-KILKENLKALGLEGEARVLRNDALRALKQLG----TREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALI  150 (187)
T ss_pred             HHHH-HHHHHHHHHhCCccceEEEeecHHHHHHhcC----CCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEE
Confidence            9998 9999999999988889999999998876542    12359999999999965441                    


Q ss_pred             EEEecCCCCCCCCCCCeEEEEEeeecceEEEEeec
Q 022298          248 VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP  282 (299)
Q Consensus       248 ~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~~  282 (299)
                      ++||++..+++..+.+|++.++|+||.|.+.||..
T Consensus       151 v~E~~~~~~~~~~~~~~~~~r~k~yG~t~l~~y~~  185 (187)
T COG0742         151 VVEHDKDVELPELPANFELHREKKYGQTKLTFYRR  185 (187)
T ss_pred             EEEeCCCcCccccCCCeEEEEEeecCCEEEEEEEe
Confidence            39999988888788899999999999999999975

>TIGR00095 RNA methyltransferase, RsmD family

Probab=100.00  E-value=1.2e-36  Score=269.08  Aligned_cols=166  Identities=23%  Similarity=0.277  Sum_probs=144.8

Q ss_pred             cceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEe
Q 022298          106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVE  185 (299)
Q Consensus       106 ~~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD  185 (299)
                      ++|||||+|+|+|++|..|++..+|||++++++++||+++..      +++.+|||||||||++|+||+|||+.+|++||
T Consensus         6 ~~~~rIi~G~~kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~------~~g~~vLDLfaGsG~lglea~srga~~v~~vE   79 (189)
T TIGR00095         6 SKKRIIIGGWRGGRLLKLPPGGSTRPTTRVVRELFFNILRPE------IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEE   79 (189)
T ss_pred             CceEEEEehhhCCcccCCCCCCCCCCchHHHHHHHHHHHHHh------cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEe
Confidence            469999999999999999999899999999999999999863      57899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCe------------------E
Q 022298          186 MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY------------------E  247 (299)
Q Consensus       186 ~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~------------------~  247 (299)
                      +|+.++ +.+++|++.+++.++++++++|+.+++....   .....||+||+||||....+                  .
T Consensus        80 ~~~~a~-~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~---~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~ii  155 (189)
T TIGR00095        80 DDRKAN-QTLKENLALLKSGEQAEVVRNSALRALKFLA---KKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLI  155 (189)
T ss_pred             CCHHHH-HHHHHHHHHhCCcccEEEEehhHHHHHHHhh---ccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEE
Confidence            999998 9999999999987778999999988875431   11235899999999986432                  2


Q ss_pred             EEEecCCCCCCCCCCCeEEEEEeeecceEEEEee
Q 022298          248 VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG  281 (299)
Q Consensus       248 ~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~  281 (299)
                      ++||+.+.+++.....|++.++|+||+|.++||+
T Consensus       156 v~E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~  189 (189)
T TIGR00095       156 VVEEDREPELPPVEAWLSLKRQKKGGVSYLLYYQ  189 (189)
T ss_pred             EEEecCCCCCCCCcCCeEEEEEeecCcEEEEEEC
Confidence            3899887777655567999999999999999985

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=100.00  E-value=1.7e-33  Score=251.11  Aligned_cols=169  Identities=23%  Similarity=0.366  Sum_probs=144.5

Q ss_pred             ccccccc-ceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC
Q 022298          100 QEERTTH-RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC  178 (299)
Q Consensus       100 ~~p~~~~-~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa  178 (299)
                      +.|++.. ..||||+|+|+|++|.+|++..+||+++++++++|+++...      ..+.+|||||||||++|++++++|+
T Consensus         3 ~~~~~~~~~~mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~------~~~~~vLDl~~GsG~l~l~~lsr~a   76 (199)
T PRK10909          3 KKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDARCLDCFAGSGALGLEALSRYA   76 (199)
T ss_pred             CCCCCCCCCCEEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhhh------cCCCEEEEcCCCccHHHHHHHHcCC
Confidence            3444442 24999999999999999998889999999999999999642      3578999999999999999999999


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCe------------
Q 022298          179 SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY------------  246 (299)
Q Consensus       179 ~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~------------  246 (299)
                      .+|++||+|++++ +.+++|++.+++. +++++++|+.+++...      ...||+||+||||..+.+            
T Consensus        77 ~~V~~vE~~~~a~-~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~  148 (199)
T PRK10909         77 AGATLLEMDRAVA-QQLIKNLATLKAG-NARVVNTNALSFLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNGW  148 (199)
T ss_pred             CEEEEEECCHHHH-HHHHHHHHHhCCC-cEEEEEchHHHHHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCCC
Confidence            9999999999998 9999999999975 5899999998876421      346999999999986532            


Q ss_pred             ------EEEEecCCCCCCCCCCCeEEEEEeeecceEEEEeec
Q 022298          247 ------EVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP  282 (299)
Q Consensus       247 ------~~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~~  282 (299)
                            .++||+.+++++....+|+++++|+||+|.++||+.
T Consensus       149 l~~~~iv~ve~~~~~~~~~~~~~~~~~~~k~yG~s~~~~~~~  190 (199)
T PRK10909        149 LADEALIYVESEVENGLPTVPANWQLHREKVAGQVAYRLYIR  190 (199)
T ss_pred             cCCCcEEEEEecCCCCcccCCCccEEEEEecCCCEEEEEEEE
Confidence                  239999988777666679999999999999999985

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=1.7e-15  Score=141.83  Aligned_cols=125  Identities=25%  Similarity=0.342  Sum_probs=97.0

Q ss_pred             cccccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC
Q 022298          102 ERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC  178 (299)
Q Consensus       102 p~~~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa  178 (299)
                      .+..+..+++|.|.  |.|..+.+.++. .+||.|+.+.+++...+..        ...+|||+|||||++++.++.++.
T Consensus        62 rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~--------~~~~ilDlGTGSG~iai~la~~~~  133 (280)
T COG2890          62 RRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQ--------LDKRILDLGTGSGAIAIALAKEGP  133 (280)
T ss_pred             HHHCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhh--------cCCcEEEecCChHHHHHHHHhhCc
Confidence            33334456667774  779999987764 5899999988887633322        112799999999999998887754


Q ss_pred             -CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298          179 -SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD  245 (299)
Q Consensus       179 -~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~  245 (299)
                       ..|+++|+|++|+ +++++|++.+++ .++.++++|.++.+         .++||+|++||||-...
T Consensus       134 ~~~V~a~Dis~~Al-~~A~~Na~~~~l-~~~~~~~~dlf~~~---------~~~fDlIVsNPPYip~~  190 (280)
T COG2890         134 DAEVIAVDISPDAL-ALARENAERNGL-VRVLVVQSDLFEPL---------RGKFDLIVSNPPYIPAE  190 (280)
T ss_pred             CCeEEEEECCHHHH-HHHHHHHHHcCC-ccEEEEeeeccccc---------CCceeEEEeCCCCCCCc
Confidence             3899999999998 999999999998 45666777776543         35899999999998754

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=4.1e-15  Score=131.03  Aligned_cols=79  Identities=30%  Similarity=0.390  Sum_probs=72.0

Q ss_pred             CCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       153 ~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++++..|+|||||||.+|+.|+..|+.+|++||+|++++ +++++|+..++  +.+.++.+|+.++          ..+|
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~--g~v~f~~~dv~~~----------~~~~  109 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELL--GDVEFVVADVSDF----------RGKF  109 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhC--CceEEEEcchhhc----------CCcc
Confidence            378899999999999999999999999999999999998 99999999844  4589999999886          3789


Q ss_pred             eEEEEcCCCCCC
Q 022298          233 DYMSVTPPYTAV  244 (299)
Q Consensus       233 DlI~iDPPY~~~  244 (299)
                      |.+++||||+..
T Consensus       110 dtvimNPPFG~~  121 (198)
T COG2263         110 DTVIMNPPFGSQ  121 (198)
T ss_pred             ceEEECCCCccc
Confidence            999999999975

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.62  E-value=2.5e-15  Score=138.51  Aligned_cols=128  Identities=22%  Similarity=0.241  Sum_probs=96.6

Q ss_pred             cccccccceEEEEeee--eCCeEEecCCCCC-CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc
Q 022298          100 QEERTTHRLLQVLGGK--ARRKKLLSPKGMD-VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR  176 (299)
Q Consensus       100 ~~p~~~~~~mrIi~Gk--~~Gr~L~~p~~~~-~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr  176 (299)
                      ...+..++.+++|.|.  |+|+++.++++.. +|+.++.+.+.+..++...      ....+|||+|||||.+++.++.+
T Consensus        34 ~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~------~~~~~vLDlg~GsG~i~l~la~~  107 (251)
T TIGR03704        34 VDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPR------SGTLVVVDLCCGSGAVGAALAAA  107 (251)
T ss_pred             HHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhccc------CCCCEEEEecCchHHHHHHHHHh
Confidence            3455556677778884  6699999877754 6888887777766665421      12458999999999999987764


Q ss_pred             -CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          177 -GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       177 -Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                       +..+|+++|+|+.++ +.+++|++.++.    +++++|+.+++...     ..++||+|++||||..
T Consensus       108 ~~~~~v~~vDis~~al-~~A~~N~~~~~~----~~~~~D~~~~l~~~-----~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704       108 LDGIELHAADIDPAAV-RCARRNLADAGG----TVHEGDLYDALPTA-----LRGRVDILAANAPYVP  165 (251)
T ss_pred             CCCCEEEEEECCHHHH-HHHHHHHHHcCC----EEEEeechhhcchh-----cCCCEeEEEECCCCCC
Confidence             345799999999998 999999998763    57889987765321     1257999999999975

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.61  E-value=9.7e-15  Score=126.60  Aligned_cols=109  Identities=25%  Similarity=0.411  Sum_probs=89.8

Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHH
Q 022298          120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPN  198 (299)
Q Consensus       120 ~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~-~V~~VD~n~~Al~~~a~~N  198 (299)
                      ++..++|.+.++..+.-.+.+.+.+...       ...++||+|||+|.+|+.++.++.. +|+++|+|+.|+ +.+++|
T Consensus         3 ~~~~~~gvFs~~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-~~a~~n   74 (170)
T PF05175_consen    3 EFITHPGVFSPPRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-ELAKRN   74 (170)
T ss_dssp             EEEEETTSTTTTSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-HHHHHH
T ss_pred             EEEECCCeeCCCCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHH
Confidence            4567788777788888778888888753       4789999999999999999888765 799999999998 999999


Q ss_pred             HHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298          199 LEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD  245 (299)
Q Consensus       199 ~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~  245 (299)
                      ++.+++.+ ++++..|..+..        ..++||+|++|||+..+.
T Consensus        75 ~~~n~~~~-v~~~~~d~~~~~--------~~~~fD~Iv~NPP~~~~~  112 (170)
T PF05175_consen   75 AERNGLEN-VEVVQSDLFEAL--------PDGKFDLIVSNPPFHAGG  112 (170)
T ss_dssp             HHHTTCTT-EEEEESSTTTTC--------CTTCEEEEEE---SBTTS
T ss_pred             HHhcCccc-cccccccccccc--------cccceeEEEEccchhccc
Confidence            99999987 999999987653        147899999999987654

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.61  E-value=1e-14  Score=141.53  Aligned_cols=114  Identities=12%  Similarity=0.137  Sum_probs=91.2

Q ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 022298          117 RRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI  196 (299)
Q Consensus       117 ~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~  196 (299)
                      .|..+.++.+.+ -.+.+.+++++|+++....+   ...+.+|||||||+|.++++++++|+ +|++||+|+.|+ +.++
T Consensus       199 ~g~~~~~~~~~F-~Q~n~~~~~~l~~~~~~~l~---~~~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av-~~a~  272 (374)
T TIGR02085       199 NDVPLVIRPQSF-FQTNPKVAAQLYATARQWVR---EIPVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAI-ACAQ  272 (374)
T ss_pred             CCEEEEECCCcc-ccCCHHHHHHHHHHHHHHHH---hcCCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHH-HHHH
Confidence            355666666544 56667799999987754310   13467999999999999999998874 799999999998 9999


Q ss_pred             HHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       197 ~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +|++.+++. +++++++|+.+++...      ..+||+|++||||..
T Consensus       273 ~N~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D~vi~DPPr~G  312 (374)
T TIGR02085       273 QSAQMLGLD-NLSFAALDSAKFATAQ------MSAPELVLVNPPRRG  312 (374)
T ss_pred             HHHHHcCCC-cEEEEECCHHHHHHhc------CCCCCEEEECCCCCC
Confidence            999999985 5899999998876431      246999999999974

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.60  E-value=2.9e-15  Score=145.96  Aligned_cols=85  Identities=28%  Similarity=0.394  Sum_probs=76.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .|.+||||||.||++++.|+..||++|+.||+|..++ +++++|++.||+. +++.++++|++++++...   ..+.+||
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al-~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~---~~g~~fD  292 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRAL-EWARENAELNGLDGDRHRFIVGDVFKWLRKAE---RRGEKFD  292 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHH-HHHHHHHHhcCCCccceeeehhhHHHHHHHHH---hcCCccc
Confidence            4899999999999999999999999999999999998 9999999999986 567899999999998764   3456999


Q ss_pred             EEEEcCC-CCC
Q 022298          234 YMSVTPP-YTA  243 (299)
Q Consensus       234 lI~iDPP-Y~~  243 (299)
                      +|++||| |..
T Consensus       293 lIilDPPsF~r  303 (393)
T COG1092         293 LIILDPPSFAR  303 (393)
T ss_pred             EEEECCccccc
Confidence            9999999 443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.60  E-value=5.1e-15  Score=138.39  Aligned_cols=128  Identities=20%  Similarity=0.155  Sum_probs=101.0

Q ss_pred             cccccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-
Q 022298          102 ERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-  177 (299)
Q Consensus       102 p~~~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-  177 (299)
                      .+.....+.+|.|+  |.|+.+.+..+. .+||.++.+.+.+++.+...      ....+|||+|||||.+++.++... 
T Consensus        64 ~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~------~~~~~vLDlG~GsG~i~l~la~~~~  137 (284)
T TIGR00536        64 RRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQ------NPILHILDLGTGSGCIALALAYEFP  137 (284)
T ss_pred             HHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhc------CCCCEEEEEeccHhHHHHHHHHHCC
Confidence            33344556666774  669999887765 47999999999888776431      123699999999999999988764 


Q ss_pred             CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          178 CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       178 a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      ..+|+++|+|+.++ +.+++|++.+++.++++++++|+.+.+        ...+||+|++||||...
T Consensus       138 ~~~v~avDis~~al-~~a~~n~~~~~~~~~v~~~~~d~~~~~--------~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       138 NAEVIAVDISPDAL-AVAEENAEKNQLEHRVEFIQSNLFEPL--------AGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhccC--------cCCCccEEEECCCCCCc
Confidence            34799999999998 999999999998767899999987643        12379999999999864

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.60  E-value=4.8e-15  Score=118.98  Aligned_cols=82  Identities=30%  Similarity=0.448  Sum_probs=70.1

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM  235 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI  235 (299)
                      |.+|||+|||+|.+.+.++.+|..+++++|+|+.++ ++++.|+..++..++++++++|+.+.....     ..++||+|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~-~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~I   74 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAV-ELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLI   74 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHH-HHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHH-HHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEE
Confidence            458999999999999999998867899999999998 999999999998888999999998876322     35789999


Q ss_pred             EEcCCCCC
Q 022298          236 SVTPPYTA  243 (299)
Q Consensus       236 ~iDPPY~~  243 (299)
                      ++||||..
T Consensus        75 v~npP~~~   82 (117)
T PF13659_consen   75 VTNPPYGP   82 (117)
T ss_dssp             EE--STTS
T ss_pred             EECCCCcc
Confidence            99999975

...

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.60  E-value=3.2e-15  Score=150.45  Aligned_cols=138  Identities=19%  Similarity=0.221  Sum_probs=106.7

Q ss_pred             cccccccccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCC---------------CCC--CCCCC
Q 022298           98 KSQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGG---------------CPA--SLRPG  157 (299)
Q Consensus        98 ~~~~p~~~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~---------------~~~--~~~~~  157 (299)
                      ++...+..++.+++|.|+  |.|+.+.+-++. .+||.|+.+.+.+++.+.....               ...  ...+.
T Consensus        61 ~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
T PRK01544         61 KLLERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFL  140 (506)
T ss_pred             HHHHHHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCC
Confidence            445566667788888885  679999987765 5899999999988776541000               000  01346


Q ss_pred             EEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEE
Q 022298          158 RWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMS  236 (299)
Q Consensus       158 ~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~  236 (299)
                      +|||+|||||++++.++++ +..+|+++|+|+.++ +.+++|++.+++.++++++++|+.+.+        ..++||+|+
T Consensus       141 ~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al-~~A~~N~~~~~l~~~v~~~~~D~~~~~--------~~~~fDlIv  211 (506)
T PRK01544        141 NILELGTGSGCIAISLLCELPNANVIATDISLDAI-EVAKSNAIKYEVTDRIQIIHSNWFENI--------EKQKFDFIV  211 (506)
T ss_pred             EEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHcCCccceeeeecchhhhC--------cCCCccEEE
Confidence            8999999999999987764 445899999999998 999999999998777899999986543        135799999


Q ss_pred             EcCCCCCC
Q 022298          237 VTPPYTAV  244 (299)
Q Consensus       237 iDPPY~~~  244 (299)
                      +||||...
T Consensus       212 sNPPYi~~  219 (506)
T PRK01544        212 SNPPYISH  219 (506)
T ss_pred             ECCCCCCc
Confidence            99999863

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.59  E-value=8.8e-15  Score=143.37  Aligned_cols=128  Identities=18%  Similarity=0.183  Sum_probs=102.0

Q ss_pred             cccccccccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHH
Q 022298           98 KSQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI  174 (299)
Q Consensus        98 ~~~~p~~~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl  174 (299)
                      +....+...+.+++|.|.  |.|+.+.+.++. .+||.++.+.+.+++.+.         .+.++||+|||||.+++.++
T Consensus       200 ~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---------~~~rVLDLGcGSG~IaiaLA  270 (423)
T PRK14966        200 RLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---------ENGRVWDLGTGSGAVAVTVA  270 (423)
T ss_pred             HHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---------CCCEEEEEeChhhHHHHHHH
Confidence            345566677889999995  679998886654 589999999998877653         24699999999999999877


Q ss_pred             Hc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          175 SR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       175 Sr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .+ ...+|+++|+|+.++ +.+++|++.++.  +++++++|+.+...      ...++||+|++||||..
T Consensus       271 ~~~p~a~VtAVDiS~~AL-e~AreNa~~~g~--rV~fi~gDl~e~~l------~~~~~FDLIVSNPPYI~  331 (423)
T PRK14966        271 LERPDAFVRASDISPPAL-ETARKNAADLGA--RVEFAHGSWFDTDM------PSEGKWDIIVSNPPYIE  331 (423)
T ss_pred             HhCCCCEEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEcchhcccc------ccCCCccEEEECCCCCC
Confidence            54 456899999999998 999999998875  58899999865321      01357999999999964

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.57  E-value=1.2e-14  Score=142.14  Aligned_cols=86  Identities=22%  Similarity=0.312  Sum_probs=75.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||||+++++|+..|+.+|++||+|+.++ +.+++|++.|++. ++++++++|+.+++....   ..+++||
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al-~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~---~~~~~fD  295 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYR---DRGEKFD  295 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH---hcCCCCC
Confidence            4789999999999999999998998999999999998 9999999999986 468999999999886531   1245899


Q ss_pred             EEEEcCCCCCC
Q 022298          234 YMSVTPPYTAV  244 (299)
Q Consensus       234 lI~iDPPY~~~  244 (299)
                      +||+||||...
T Consensus       296 lVilDPP~f~~  306 (396)
T PRK15128        296 VIVMDPPKFVE  306 (396)
T ss_pred             EEEECCCCCCC
Confidence            99999999653

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.57  E-value=1.5e-14  Score=135.83  Aligned_cols=82  Identities=29%  Similarity=0.394  Sum_probs=67.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+++|||+||.||++++.|+..||.+|+.||.+..++ +++++|++.||++ +++++++.|+++++....    ..++||
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al-~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~----~~~~fD  197 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRAL-EWAKENAALNGLDLDRHRFIQGDVFKFLKRLK----KGGRFD  197 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHH-HHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH----HTT-EE
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHHHh----cCCCCC
Confidence            5789999999999999999999999999999999998 9999999999986 578999999999987642    246899


Q ss_pred             EEEEcCCC
Q 022298          234 YMSVTPPY  241 (299)
Q Consensus       234 lI~iDPPY  241 (299)
                      +|++|||-
T Consensus       198 ~IIlDPPs  205 (286)
T PF10672_consen  198 LIILDPPS  205 (286)
T ss_dssp             EEEE--SS
T ss_pred             EEEECCCC
Confidence            99999993

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.57  E-value=3.4e-14  Score=137.42  Aligned_cols=117  Identities=21%  Similarity=0.212  Sum_probs=87.8

Q ss_pred             eEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 022298          119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN  198 (299)
Q Consensus       119 r~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N  198 (299)
                      ..+..+.+.+..+... +.+.+++++.....    ..+.+|||+|||+|++++ ++++++.+|++||+++.++ +.+++|
T Consensus       175 ~~~~~~~~sF~Q~N~~-~~e~l~~~v~~~~~----~~~~~vLDl~~G~G~~sl-~la~~~~~v~~vE~~~~ai-~~a~~N  247 (362)
T PRK05031        175 FIYRQVENSFTQPNAA-VNEKMLEWALDATK----GSKGDLLELYCGNGNFTL-ALARNFRRVLATEISKPSV-AAAQYN  247 (362)
T ss_pred             EEEEeCCCCeeccCHH-HHHHHHHHHHHHhh----cCCCeEEEEeccccHHHH-HHHhhCCEEEEEECCHHHH-HHHHHH
Confidence            3455555555555544 77888888765311    123579999999999999 7788888999999999998 999999


Q ss_pred             HHHhCCCCcEEEEEcchhhHHHHHhhhc-----C----CCCCeeEEEEcCCCCC
Q 022298          199 LEWTGFLDVSSIHTVRVETFLERAEQFV-----G----KDGPFDYMSVTPPYTA  243 (299)
Q Consensus       199 ~~~~g~~~~~~vi~~D~~~~l~~~~~~~-----~----~~~~fDlI~iDPPY~~  243 (299)
                      ++.+++. +++++++|+.++++......     +    ...+||+||+||||..
T Consensus       248 ~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G  300 (362)
T PRK05031        248 IAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG  300 (362)
T ss_pred             HHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCC
Confidence            9999986 58999999999876431100     0    0125899999999964

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.55  E-value=3.5e-14  Score=133.11  Aligned_cols=129  Identities=21%  Similarity=0.255  Sum_probs=98.0

Q ss_pred             ccccc-ccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHH-HHHhcCCCCCCCCCCEEEEECCccchHHHHHH
Q 022298          100 QEERT-THRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI  174 (299)
Q Consensus       100 ~~p~~-~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn-~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl  174 (299)
                      ...+. .+..+.+|.|+  |.|..+.+..+. .+||.++.+.+..+. ++..       ..+.+|||+|||||.+++.++
T Consensus        68 ~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~vLDlG~GsG~i~~~la  140 (284)
T TIGR03533        68 IERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEP-------EPVKRILDLCTGSGCIAIACA  140 (284)
T ss_pred             HHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhcc-------CCCCEEEEEeCchhHHHHHHH
Confidence            34443 34577778885  458888887664 478887765555443 3321       135689999999999999988


Q ss_pred             HcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          175 SRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       175 SrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      .+. ..+|+++|+|+.++ +.+++|++.+++.++++++++|+.+.+        ..++||+|++||||...
T Consensus       141 ~~~~~~~v~avDis~~al-~~A~~n~~~~~~~~~i~~~~~D~~~~~--------~~~~fD~Iv~NPPy~~~  202 (284)
T TIGR03533       141 YAFPEAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIQSDLFAAL--------PGRKYDLIVSNPPYVDA  202 (284)
T ss_pred             HHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhcc--------CCCCccEEEECCCCCCc
Confidence            763 34799999999998 999999999998777999999986543        13579999999999763

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.55  E-value=2.7e-14  Score=131.20  Aligned_cols=107  Identities=21%  Similarity=0.289  Sum_probs=87.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 022298          126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGF  204 (299)
Q Consensus       126 ~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~  204 (299)
                      ....|+.+|.+.-+-|-..         ...++|||+|||+|.+|+.+++| ...++++||++++++ +.+++|++.+++
T Consensus        24 ~~~~~~~~DaiLL~~~~~~---------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a-~~A~~nv~ln~l   93 (248)
T COG4123          24 RCGFRYGTDAILLAAFAPV---------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAA-EMAQRNVALNPL   93 (248)
T ss_pred             CCccccccHHHHHHhhccc---------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHH-HHHHHHHHhCcc
Confidence            3457999997654443322         23789999999999999998888 546899999999998 999999999999


Q ss_pred             CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCeE
Q 022298          205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE  247 (299)
Q Consensus       205 ~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~~  247 (299)
                      +++++++++|+..+.+..     ...+||+|++||||......
T Consensus        94 ~~ri~v~~~Di~~~~~~~-----~~~~fD~Ii~NPPyf~~~~~  131 (248)
T COG4123          94 EERIQVIEADIKEFLKAL-----VFASFDLIICNPPYFKQGSR  131 (248)
T ss_pred             hhceeEehhhHHHhhhcc-----cccccCEEEeCCCCCCCccc
Confidence            999999999999987653     23479999999999875443

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.53  E-value=6.5e-14  Score=132.77  Aligned_cols=128  Identities=21%  Similarity=0.247  Sum_probs=97.8

Q ss_pred             ccccc-ccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHH-HHHhcCCCCCCCCCCEEEEECCccchHHHHHH
Q 022298          100 QEERT-THRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI  174 (299)
Q Consensus       100 ~~p~~-~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn-~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl  174 (299)
                      ...+. ....+++|.|+  |.|+.+.+.++. .+||.++.+.+..+. ++..       ....+|||+|||+|.+++.++
T Consensus        80 ~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~VLDlG~GsG~iai~la  152 (307)
T PRK11805         80 IERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLED-------PPVTRILDLCTGSGCIAIACA  152 (307)
T ss_pred             HHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhcc-------CCCCEEEEEechhhHHHHHHH
Confidence            34443 35677788885  458888886654 478887766555544 3321       113689999999999999887


Q ss_pred             HcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          175 SRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       175 SrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .+. ..+|+++|+|+.++ +.+++|++.+++.++++++++|+.+.+.        .++||+|++||||..
T Consensus       153 ~~~p~~~V~avDis~~al-~~A~~n~~~~~l~~~i~~~~~D~~~~l~--------~~~fDlIvsNPPyi~  213 (307)
T PRK11805        153 YAFPDAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIESDLFAALP--------GRRYDLIVSNPPYVD  213 (307)
T ss_pred             HHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCCcEEEEECchhhhCC--------CCCccEEEECCCCCC
Confidence            753 45799999999998 9999999999987779999999876431        357999999999975

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.50  E-value=8.2e-14  Score=145.20  Aligned_cols=82  Identities=20%  Similarity=0.325  Sum_probs=74.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||||++++.|+.+|+.+|++||+|+.++ +.+++|++.+++. ++++++++|+.+++...      .++||
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al-~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------~~~fD  610 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYL-EWAERNFALNGLSGRQHRLIQADCLAWLKEA------REQFD  610 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCccceEEEEccHHHHHHHc------CCCcC
Confidence            4789999999999999999999998999999999998 9999999999986 57999999999987542      36899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|++||||..
T Consensus       611 lIilDPP~f~  620 (702)
T PRK11783        611 LIFIDPPTFS  620 (702)
T ss_pred             EEEECCCCCC
Confidence            9999999965

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.49  E-value=1.3e-13  Score=127.37  Aligned_cols=133  Identities=18%  Similarity=0.211  Sum_probs=101.0

Q ss_pred             ccceEEEEeeee--CCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCCCE
Q 022298          105 THRLLQVLGGKA--RRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSE  180 (299)
Q Consensus       105 ~~~~mrIi~Gk~--~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa~~  180 (299)
                      .+-.+++|-|.|  .+..|..-++. .+||.|+.+.+++.+.+.+..    -..+..+||+|||||++++..++ .+...
T Consensus        99 ~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~----~~~~~~ildlgtGSGaIslsll~~L~~~~  174 (328)
T KOG2904|consen   99 KRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSE----HSKHTHILDLGTGSGAISLSLLHGLPQCT  174 (328)
T ss_pred             hcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhh----hcccceEEEecCCccHHHHHHHhcCCCce
Confidence            344678888875  47777766654 589999999999888876531    13466899999999999998775 35567


Q ss_pred             EEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          181 VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       181 V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      |++||.++.|+ .++.+|++.+++.+++.+++-++..-....  +....+++|+++.||||...
T Consensus       175 v~AiD~S~~Ai-~La~eN~qr~~l~g~i~v~~~~me~d~~~~--~~l~~~~~dllvsNPPYI~~  235 (328)
T KOG2904|consen  175 VTAIDVSKAAI-KLAKENAQRLKLSGRIEVIHNIMESDASDE--HPLLEGKIDLLVSNPPYIRK  235 (328)
T ss_pred             EEEEeccHHHH-HHHHHHHHHHhhcCceEEEecccccccccc--cccccCceeEEecCCCcccc
Confidence            99999999998 999999999999999988865443211000  11234789999999999863

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=2.4e-13  Score=127.67  Aligned_cols=197  Identities=14%  Similarity=0.172  Sum_probs=133.1

Q ss_pred             eeeeeeccccccccceeEeeccCCCCCChhHHHHHHHHcCCCCCCC-ccCCCcchhhhhc--ccCCc------e-----e
Q 022298           28 FSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEF-LSEPSPKTRRRKE--GRGSK------L-----V   93 (299)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~--~~~g~------~-----~   93 (299)
                      +.++...+..  ..-++.-+.+...+..+..+++++..-.-+-.++ +|+...+-++...  ...+.      +     .
T Consensus        27 ~~~~~~~~~~--~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~~~~~~~~a~~~~~~  104 (300)
T COG2813          27 FLVAPADAPD--DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYGGPTKTDSARHCMRL  104 (300)
T ss_pred             cccccccccC--CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhcCccccchHhhccee
Confidence            3344444444  5678888999999989999999999887777666 3555544332111  00000      0     0


Q ss_pred             eecccccccccccceEEEEeeee--CCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHH
Q 022298           94 VSDEKSQEERTTHRLLQVLGGKA--RRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGI  171 (299)
Q Consensus        94 ~~~~~~~~p~~~~~~mrIi~Gk~--~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgI  171 (299)
                      ..-.+...+....   ..+....  .+..+.+.+|.+-+-..|.-.+.+.+.+...       .+.+|||+|||.|.+|+
T Consensus       105 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~~~~vlDlGCG~Gvlg~  174 (300)
T COG2813         105 HYYSENPPPFADE---PEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPD-------LGGKVLDLGCGYGVLGL  174 (300)
T ss_pred             EeecCCCCcccch---hhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCcc-------CCCcEEEeCCCccHHHH
Confidence            0000111111110   0111111  2455667788877888898888888887652       34599999999999999


Q ss_pred             HHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCeE
Q 022298          172 EAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE  247 (299)
Q Consensus       172 EAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~~  247 (299)
                      .++++. ..+++++|.|..|+ +.+++|++.|+.++. .++..|+.+-.         .++||+|++||||..+...
T Consensus       175 ~la~~~p~~~vtmvDvn~~Av-~~ar~Nl~~N~~~~~-~v~~s~~~~~v---------~~kfd~IisNPPfh~G~~v  240 (300)
T COG2813         175 VLAKKSPQAKLTLVDVNARAV-ESARKNLAANGVENT-EVWASNLYEPV---------EGKFDLIISNPPFHAGKAV  240 (300)
T ss_pred             HHHHhCCCCeEEEEecCHHHH-HHHHHhHHHcCCCcc-EEEEecccccc---------cccccEEEeCCCccCCcch
Confidence            988874 56899999999999 999999999999764 67888877643         3589999999999986543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.49  E-value=5.1e-13  Score=126.75  Aligned_cols=113  Identities=15%  Similarity=0.184  Sum_probs=85.4

Q ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298          118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (299)
Q Consensus       118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~  197 (299)
                      |..+....+.+ -.+...+.+.+++.+.....   ...+.+|||+|||+|.++++++++|+ +|+++|+|+.++ +.+++
T Consensus       140 ~~~~~~~~~sF-~Q~n~~~~~~l~~~v~~~l~---~~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av-~~A~~  213 (315)
T PRK03522        140 GVPLFIRPQSF-FQTNPAVAAQLYATARDWVR---ELPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAI-ACAKQ  213 (315)
T ss_pred             CEEEEECCCee-eecCHHHHHHHHHHHHHHHH---hcCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHH-HHHHH
Confidence            44555555444 33444566667665433210   13468999999999999999998874 799999999998 99999


Q ss_pred             HHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          198 NLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       198 N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      |++.+++. +++++++|+.++....      .+.||+|++|||+..
T Consensus       214 n~~~~~l~-~v~~~~~D~~~~~~~~------~~~~D~Vv~dPPr~G  252 (315)
T PRK03522        214 SAAELGLT-NVQFQALDSTQFATAQ------GEVPDLVLVNPPRRG  252 (315)
T ss_pred             HHHHcCCC-ceEEEEcCHHHHHHhc------CCCCeEEEECCCCCC
Confidence            99999984 5899999998876321      347999999999875

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.46  E-value=2.1e-13  Score=119.71  Aligned_cols=99  Identities=23%  Similarity=0.305  Sum_probs=72.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCC----------EEEEEeCCHHHHHHHHHHHH
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS----------EVHFVEMDPWVVSNVLIPNL  199 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~----------~V~~VD~n~~Al~~~a~~N~  199 (299)
                      -|..+.+..++.+....       .++..|||+|||||++.|||+..+..          +++++|+|++++ +.+++|+
T Consensus        10 a~L~~~lA~~ll~la~~-------~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v-~~a~~N~   81 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGW-------RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAV-RGARENL   81 (179)
T ss_dssp             TSS-HHHHHHHHHHTT---------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHH-HHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCC-------CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHH-HHHHHHH
Confidence            34455677778776553       25789999999999999999876533          268999999998 9999999


Q ss_pred             HHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       200 ~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +..++.+.+.+.+.|+.++-       ...+.+|.|++||||+.
T Consensus        82 ~~ag~~~~i~~~~~D~~~l~-------~~~~~~d~IvtnPPyG~  118 (179)
T PF01170_consen   82 KAAGVEDYIDFIQWDARELP-------LPDGSVDAIVTNPPYGR  118 (179)
T ss_dssp             HHTT-CGGEEEEE--GGGGG-------GTTSBSCEEEEE--STT
T ss_pred             HhcccCCceEEEecchhhcc-------cccCCCCEEEECcchhh
Confidence            99999888899999988764       12468999999999996

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.46  E-value=1e-12  Score=126.84  Aligned_cols=114  Identities=21%  Similarity=0.241  Sum_probs=82.1

Q ss_pred             eEEecCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 022298          119 KKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL  195 (299)
Q Consensus       119 r~L~~p~~~~~RPtt---d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a  195 (299)
                      .++..+.+.+..+..   +.+.+.+.+++..        .+.+|||+|||+|.+++ ++++++.+|++||+++.++ +.+
T Consensus       166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~--------~~~~vlDl~~G~G~~sl-~la~~~~~v~~vE~~~~av-~~a  235 (353)
T TIGR02143       166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQG--------SKGDLLELYCGNGNFSL-ALAQNFRRVLATEIAKPSV-NAA  235 (353)
T ss_pred             EEEEECCCCcccCCHHHHHHHHHHHHHHhhc--------CCCcEEEEeccccHHHH-HHHHhCCEEEEEECCHHHH-HHH
Confidence            456656655554444   3344444444431        23479999999999999 7788788999999999998 999


Q ss_pred             HHHHHHhCCCCcEEEEEcchhhHHHHHhh---h---cC---CCCCeeEEEEcCCCCC
Q 022298          196 IPNLEWTGFLDVSSIHTVRVETFLERAEQ---F---VG---KDGPFDYMSVTPPYTA  243 (299)
Q Consensus       196 ~~N~~~~g~~~~~~vi~~D~~~~l~~~~~---~---~~---~~~~fDlI~iDPPY~~  243 (299)
                      ++|++.+++.+ ++++++|+.+++.....   +   ..   ....||+||+|||+..
T Consensus       236 ~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G  291 (353)
T TIGR02143       236 QYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG  291 (353)
T ss_pred             HHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCC
Confidence            99999999865 89999999998753210   0   00   0124899999999754

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.45  E-value=2e-13  Score=128.88  Aligned_cols=118  Identities=21%  Similarity=0.288  Sum_probs=84.7

Q ss_pred             eeeecc-cccccc-cccceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchH
Q 022298           92 LVVSDE-KSQEER-TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV  169 (299)
Q Consensus        92 ~~~~~~-~~~~p~-~~~~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGal  169 (299)
                      +...+. +.+ |. .....++|..|.        ..|.+.+|||..+.+.+-...         ..+.+|||+|||||.+
T Consensus       114 ~~I~P~w~~~-~~~~~~~~I~idPg~--------AFGTG~H~TT~lcl~~l~~~~---------~~g~~vLDvG~GSGIL  175 (295)
T PF06325_consen  114 LVIVPSWEEY-PEPPDEIVIEIDPGM--------AFGTGHHPTTRLCLELLEKYV---------KPGKRVLDVGCGSGIL  175 (295)
T ss_dssp             EEEEETT-----SSTTSEEEEESTTS--------SS-SSHCHHHHHHHHHHHHHS---------STTSEEEEES-TTSHH
T ss_pred             EEEECCCccc-CCCCCcEEEEECCCC--------cccCCCCHHHHHHHHHHHHhc---------cCCCEEEEeCCcHHHH
Confidence            455555 333 33 333356665563        567788999999888875543         3578999999999999


Q ss_pred             HHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       170 gIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      +|.|+..||.+|+++|+|+.|+ +.+++|++.|++.+++.+.  ...+.         ..++||+|++|=
T Consensus       176 aiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~~dlvvANI  233 (295)
T PF06325_consen  176 AIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRIEVS--LSEDL---------VEGKFDLVVANI  233 (295)
T ss_dssp             HHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCEEES--CTSCT---------CCS-EEEEEEES
T ss_pred             HHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeEEEE--Eeccc---------ccccCCEEEECC
Confidence            9999999999999999999998 9999999999998876553  11111         137899999886

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK10742 putative methyltransferase; Provisional

Probab=99.44  E-value=6.2e-13  Score=122.19  Aligned_cols=80  Identities=20%  Similarity=0.213  Sum_probs=70.0

Q ss_pred             EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh------CC--CCcEEEEEcchhhHHHHHhhhcCCC
Q 022298          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT------GF--LDVSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~------g~--~~~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      +|||++||+|..|++++|+|+. |++||.|+.++ .+++.|++..      +.  ..+++++++|+.+++...      .
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~va-alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------~  162 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------T  162 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHH-HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------C
Confidence            8999999999999999999997 99999999997 9999999985      32  246899999999998653      3


Q ss_pred             CCeeEEEEcCCCCCCC
Q 022298          230 GPFDYMSVTPPYTAVD  245 (299)
Q Consensus       230 ~~fDlI~iDPPY~~~~  245 (299)
                      ..||+||+||||....
T Consensus       163 ~~fDVVYlDPMfp~~~  178 (250)
T PRK10742        163 PRPQVVYLDPMFPHKQ  178 (250)
T ss_pred             CCCcEEEECCCCCCCc
Confidence            4799999999998743

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=7.7e-13  Score=124.62  Aligned_cols=126  Identities=20%  Similarity=0.240  Sum_probs=91.0

Q ss_pred             cCCc-eeeeccccccccc-ccceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCc
Q 022298           88 RGSK-LVVSDEKSQEERT-THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG  165 (299)
Q Consensus        88 ~~g~-~~~~~~~~~~p~~-~~~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaG  165 (299)
                      ++|. +...+...-.|.. -.-.+++-.|-        ..|.+++|||....+++=+.++         ++.+|||+|||
T Consensus       110 rig~~f~I~Psw~~~~~~~~~~~i~lDPGl--------AFGTG~HpTT~lcL~~Le~~~~---------~g~~vlDvGcG  172 (300)
T COG2264         110 RIGERFVIVPSWREYPEPSDELNIELDPGL--------AFGTGTHPTTSLCLEALEKLLK---------KGKTVLDVGCG  172 (300)
T ss_pred             EeeeeEEECCCCccCCCCCCceEEEEcccc--------ccCCCCChhHHHHHHHHHHhhc---------CCCEEEEecCC
Confidence            3444 4455552222222 22256777774        5678899999998887754443         58899999999


Q ss_pred             cchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       166 SGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      ||.++|.|+..||.+|+++|+|+.|+ +.+++|++.|++....+.-..+.....        .+++||+|++|=
T Consensus       173 SGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~~~~~~~~~~~~~~--------~~~~~DvIVANI  237 (300)
T COG2264         173 SGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVELLVQAKGFLLLEVP--------ENGPFDVIVANI  237 (300)
T ss_pred             hhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCchhhhcccccchhhc--------ccCcccEEEehh
Confidence            99999999999999999999999999 999999999998742222223322221        236899999886

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.43  E-value=1.2e-12  Score=129.76  Aligned_cols=115  Identities=19%  Similarity=0.172  Sum_probs=86.6

Q ss_pred             eCCeEEecCCCCCC---CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHH
Q 022298          116 ARRKKLLSPKGMDV---RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS  192 (299)
Q Consensus       116 ~~Gr~L~~p~~~~~---RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~  192 (299)
                      +.|..+....+.+.   +..++.+.+.+.+++..       ..+.+|||+|||+|.+++.++.++ .+|+++|+|+.++ 
T Consensus       262 ~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~-------~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al-  332 (443)
T PRK13168        262 EFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP-------QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMV-  332 (443)
T ss_pred             cCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC-------CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHH-
Confidence            34666666555443   33345566666666542       256899999999999999887776 5799999999998 


Q ss_pred             HHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       193 ~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +.+++|++.+++.+ ++++++|+.+++....   .....||+|++||||..
T Consensus       333 ~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~---~~~~~fD~Vi~dPPr~g  379 (443)
T PRK13168        333 ERARENARRNGLDN-VTFYHANLEEDFTDQP---WALGGFDKVLLDPPRAG  379 (443)
T ss_pred             HHHHHHHHHcCCCc-eEEEEeChHHhhhhhh---hhcCCCCEEEECcCCcC
Confidence            99999999999864 8999999987653210   11357999999999985

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.43  E-value=1.1e-12  Score=127.48  Aligned_cols=78  Identities=18%  Similarity=0.297  Sum_probs=69.6

Q ss_pred             CEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          157 GRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+|||+|||||.+||+++++  |+.+|+++|+|+.|+ +.+++|++.|+..+ ++++++|+..++...      ..+||+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~------~~~fDv  117 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVEYNSVEN-IEVPNEDAANVLRYR------NRKFHV  117 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCc-EEEEchhHHHHHHHh------CCCCCE
Confidence            58999999999999999998  789999999999998 99999999998864 789999999988643      367999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++|| |+.
T Consensus       118 IdlDP-fGs  125 (374)
T TIGR00308       118 IDIDP-FGT  125 (374)
T ss_pred             EEeCC-CCC
Confidence            99999 554

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK14967 putative methyltransferase; Provisional

Probab=99.42  E-value=2.4e-12  Score=116.05  Aligned_cols=110  Identities=25%  Similarity=0.344  Sum_probs=83.6

Q ss_pred             eCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 022298          116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL  195 (299)
Q Consensus       116 ~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a  195 (299)
                      +.|..+.++++. .+|..+.  +.+.+.+....    ...+.+|||+|||+|.+++.++..|+.+|+++|+|+.++ +.+
T Consensus         4 ~~~~~~~~~~g~-~~p~~ds--~~l~~~l~~~~----~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l-~~a   75 (223)
T PRK14967          4 TPPDALLRAPGV-YRPQEDT--QLLADALAAEG----LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAV-RSA   75 (223)
T ss_pred             CCCceeecCCCC-cCCCCcH--HHHHHHHHhcc----cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHH-HHH
Confidence            346667777764 3676653  23444443321    124689999999999999998887877899999999998 999


Q ss_pred             HHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          196 IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       196 ~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++|++.++.  +++++++|+.+.+        ..+.||+|++||||..
T Consensus        76 ~~n~~~~~~--~~~~~~~d~~~~~--------~~~~fD~Vi~npPy~~  113 (223)
T PRK14967         76 RLNALLAGV--DVDVRRGDWARAV--------EFRPFDVVVSNPPYVP  113 (223)
T ss_pred             HHHHHHhCC--eeEEEECchhhhc--------cCCCeeEEEECCCCCC
Confidence            999998886  3778889987643        1368999999999975

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=3.5e-12  Score=126.07  Aligned_cols=117  Identities=21%  Similarity=0.173  Sum_probs=87.6

Q ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298          118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (299)
Q Consensus       118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~  197 (299)
                      |..+.++...++.+... +.+.++.+.....+   ...+.++||||||.|+||+.++ ..+.+|++||+++.++ +.+++
T Consensus       260 ~~~~~~~~~sF~Q~N~~-~~ekl~~~a~~~~~---~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV-~~A~~  333 (432)
T COG2265         260 GVSFQISPRSFFQVNPA-VAEKLYETALEWLE---LAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAV-EAAQE  333 (432)
T ss_pred             ceEEEeCCCCceecCHH-HHHHHHHHHHHHHh---hcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHH-HHHHH
Confidence            35555555555555554 44445444433210   0246799999999999999654 5566899999999999 99999


Q ss_pred             HHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298          198 NLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD  245 (299)
Q Consensus       198 N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~  245 (299)
                      |++.|++.| +++..+|++++.....    ....||.|++|||...-+
T Consensus       334 NA~~n~i~N-~~f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~  376 (432)
T COG2265         334 NAAANGIDN-VEFIAGDAEEFTPAWW----EGYKPDVVVVDPPRAGAD  376 (432)
T ss_pred             HHHHcCCCc-EEEEeCCHHHHhhhcc----ccCCCCEEEECCCCCCCC
Confidence            999999987 9999999999986531    235899999999998754

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.37  E-value=5.5e-12  Score=116.01  Aligned_cols=111  Identities=24%  Similarity=0.280  Sum_probs=87.6

Q ss_pred             eCCeEEecCCC-CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHH
Q 022298          116 ARRKKLLSPKG-MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSN  193 (299)
Q Consensus       116 ~~Gr~L~~p~~-~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~  193 (299)
                      |.|+.+.+..+ ..+||.++.+.+.+++.+..       ..+.+|||+|||+|.+++.++... ..+++++|+++.++ +
T Consensus        75 f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~-------~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l-~  146 (275)
T PRK09328         75 FWGLDFKVSPGVLIPRPETEELVEWALEALLL-------KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEAL-A  146 (275)
T ss_pred             EcCcEEEECCCceeCCCCcHHHHHHHHHhccc-------cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHH-H
Confidence            56777776655 35799999988888765532       246799999999999999887764 45799999999998 9


Q ss_pred             HHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       194 ~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .+++|++ ++..+++.++.+|+.+..        ..++||+|++||||..
T Consensus       147 ~a~~n~~-~~~~~~i~~~~~d~~~~~--------~~~~fD~Iv~npPy~~  187 (275)
T PRK09328        147 VARRNAK-HGLGARVEFLQGDWFEPL--------PGGRFDLIVSNPPYIP  187 (275)
T ss_pred             HHHHHHH-hCCCCcEEEEEccccCcC--------CCCceeEEEECCCcCC
Confidence            9999998 333456889999985432        1368999999999975

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.37  E-value=5e-12  Score=123.07  Aligned_cols=112  Identities=17%  Similarity=0.184  Sum_probs=86.8

Q ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Q 022298          118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLI  196 (299)
Q Consensus       118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~  196 (299)
                      +..+....|.+.+-..|.-.+.+...+..       ..+.+|||+|||+|.+|+.+++++ ..+|++||.|+.|+ +.++
T Consensus       198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av-~~A~  269 (378)
T PRK15001        198 DWTIHNHANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSR  269 (378)
T ss_pred             eEEEEecCCccCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHH-HHHH
Confidence            34455566766677788777777776643       124699999999999999988874 45899999999998 9999


Q ss_pred             HHHHHhCCC--CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298          197 PNLEWTGFL--DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD  245 (299)
Q Consensus       197 ~N~~~~g~~--~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~  245 (299)
                      +|++.++..  ++++++.+|+.+.+        ...+||+|++||||..+.
T Consensus       270 ~N~~~n~~~~~~~v~~~~~D~l~~~--------~~~~fDlIlsNPPfh~~~  312 (378)
T PRK15001        270 LNVETNMPEALDRCEFMINNALSGV--------EPFRFNAVLCNPPFHQQH  312 (378)
T ss_pred             HHHHHcCcccCceEEEEEccccccC--------CCCCEEEEEECcCcccCc
Confidence            999988753  25788888876532        135899999999998753

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.36  E-value=3.9e-12  Score=111.88  Aligned_cols=101  Identities=20%  Similarity=0.158  Sum_probs=82.7

Q ss_pred             CCCCCCCCH--HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHH
Q 022298          125 KGMDVRPMM--EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEW  201 (299)
Q Consensus       125 ~~~~~RPtt--d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~  201 (299)
                      ....+||++  +.+++.+++.+....    .+.+.+|||+|||+|.+++.++..+ ..+|++||.|+.++ +.+++|++.
T Consensus        14 ~~~l~~~~~~~~~~~~~~~d~i~~~~----~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~-~~a~~~~~~   88 (181)
T TIGR00138        14 RFNLTSLKTPEEIWERHILDSLKLLE----YLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV-AFLREVKAE   88 (181)
T ss_pred             cccccccCCHHHHHHHHHHHHHHHHH----hcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHH
Confidence            334589999  899999999875321    1468899999999999999876543 45799999999998 999999999


Q ss_pred             hCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          202 TGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       202 ~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      +++.+ ++++++|+.++.        ..++||+|+++.
T Consensus        89 ~~~~~-i~~i~~d~~~~~--------~~~~fD~I~s~~  117 (181)
T TIGR00138        89 LGLNN-VEIVNGRAEDFQ--------HEEQFDVITSRA  117 (181)
T ss_pred             hCCCC-eEEEecchhhcc--------ccCCccEEEehh
Confidence            98865 899999988752        136899999986

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.36  E-value=4.4e-12  Score=122.40  Aligned_cols=120  Identities=20%  Similarity=0.196  Sum_probs=74.2

Q ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298          118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (299)
Q Consensus       118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~  197 (299)
                      +..+.++++.+..+.+. +.+.+++.+....+    ..+..+||||||+|++|+.+ +..+.+|++||.++.|+ +.+++
T Consensus       164 ~~~~~~~~~sFfQvN~~-~~~~l~~~~~~~l~----~~~~~vlDlycG~G~fsl~l-a~~~~~V~gvE~~~~av-~~A~~  236 (352)
T PF05958_consen  164 GLSFRISPGSFFQVNPE-QNEKLYEQALEWLD----LSKGDVLDLYCGVGTFSLPL-AKKAKKVIGVEIVEEAV-EDARE  236 (352)
T ss_dssp             TEEEEEETTS---SBHH-HHHHHHHHHHHHCT----T-TTEEEEES-TTTCCHHHH-HCCSSEEEEEES-HHHH-HHHHH
T ss_pred             ceEEEECCCcCccCcHH-HHHHHHHHHHHHhh----cCCCcEEEEeecCCHHHHHH-HhhCCeEEEeeCCHHHH-HHHHH
Confidence            45566666666677766 45555555443311    22348999999999999965 55566899999999998 99999


Q ss_pred             HHHHhCCCCcEEEEEcchhhHHHHHhh------hc---CCCCCeeEEEEcCCCCCCC
Q 022298          198 NLEWTGFLDVSSIHTVRVETFLERAEQ------FV---GKDGPFDYMSVTPPYTAVD  245 (299)
Q Consensus       198 N~~~~g~~~~~~vi~~D~~~~l~~~~~------~~---~~~~~fDlI~iDPPY~~~~  245 (299)
                      |++.+++.| ++++++++.++......      +.   .....+|+|++|||+..-.
T Consensus       237 Na~~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~  292 (352)
T PF05958_consen  237 NAKLNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD  292 (352)
T ss_dssp             HHHHTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred             HHHHcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence            999999975 89999888766432210      00   0123689999999998744

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.36  E-value=1.3e-11  Score=115.80  Aligned_cols=98  Identities=20%  Similarity=0.250  Sum_probs=78.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 022298          124 PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (299)
Q Consensus       124 p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g  203 (299)
                      +.|.+++||+....+.+-...         ..+.+|||+|||||.+++.++..|+.+|+++|+|+.++ +.+++|++.++
T Consensus       137 aFgtG~h~tt~l~l~~l~~~~---------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al-~~a~~n~~~n~  206 (288)
T TIGR00406       137 AFGTGTHPTTSLCLEWLEDLD---------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV-ESARKNAELNQ  206 (288)
T ss_pred             cccCCCCHHHHHHHHHHHhhc---------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcC
Confidence            566678999988776553322         35789999999999999999889988999999999998 99999999999


Q ss_pred             CCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          204 FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       204 ~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      +.+++.+...+....         ..++||+|++|..
T Consensus       207 ~~~~~~~~~~~~~~~---------~~~~fDlVvan~~  234 (288)
T TIGR00406       207 VSDRLQVKLIYLEQP---------IEGKADVIVANIL  234 (288)
T ss_pred             CCcceEEEecccccc---------cCCCceEEEEecC
Confidence            877676776663221         1368999999874

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.35  E-value=1.2e-11  Score=111.78  Aligned_cols=110  Identities=25%  Similarity=0.302  Sum_probs=86.5

Q ss_pred             eCCeEEecCCC-CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHH
Q 022298          116 ARRKKLLSPKG-MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSN  193 (299)
Q Consensus       116 ~~Gr~L~~p~~-~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~  193 (299)
                      +.|..+....+ ...||.++.+.+.+++.+..        .+.+|||+|||+|.+++.++.. ...+++++|+++.++ +
T Consensus        55 ~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~--------~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~-~  125 (251)
T TIGR03534        55 FYGLDFKVSPGVLIPRPDTEELVEAALERLKK--------GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEAL-A  125 (251)
T ss_pred             EeceEEEECCCcccCCCChHHHHHHHHHhccc--------CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHH-H
Confidence            34555555444 34688888887777766542        3569999999999999988875 344799999999998 9


Q ss_pred             HHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       194 ~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .+++|++.+++. +++++++|+.+.+        ..++||+|++||||..
T Consensus       126 ~a~~~~~~~~~~-~~~~~~~d~~~~~--------~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534       126 VARKNAARLGLD-NVTFLQSDWFEPL--------PGGKFDLIVSNPPYIP  166 (251)
T ss_pred             HHHHHHHHcCCC-eEEEEECchhccC--------cCCceeEEEECCCCCc
Confidence            999999998885 4889999987643        1468999999999985

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.35  E-value=3.3e-12  Score=121.83  Aligned_cols=94  Identities=24%  Similarity=0.224  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (299)
Q Consensus       133 td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~  212 (299)
                      ...+..++.|.+..       ..+.+|||+|||||++.+|++..|+ +++++|+|+.++ +.++.|++.+++.+ +++++
T Consensus       167 ~~~la~~~~~l~~~-------~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~-~~a~~nl~~~g~~~-i~~~~  236 (329)
T TIGR01177       167 DPKLARAMVNLARV-------TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMV-AGARINLEHYGIED-FFVKR  236 (329)
T ss_pred             CHHHHHHHHHHhCC-------CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHH-HHHHHHHHHhCCCC-CeEEe
Confidence            34567777776543       2577999999999999999988876 699999999998 99999999999876 78899


Q ss_pred             cchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       213 ~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +|+.+.-       ...+.||+|++||||..
T Consensus       237 ~D~~~l~-------~~~~~~D~Iv~dPPyg~  260 (329)
T TIGR01177       237 GDATKLP-------LSSESVDAIATDPPYGR  260 (329)
T ss_pred             cchhcCC-------cccCCCCEEEECCCCcC
Confidence            9987642       12468999999999986

This family is found exclusively in the Archaea.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.35  E-value=1.4e-11  Score=121.41  Aligned_cols=114  Identities=18%  Similarity=0.134  Sum_probs=82.1

Q ss_pred             CCeEEecCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHH
Q 022298          117 RRKKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN  193 (299)
Q Consensus       117 ~Gr~L~~p~~~~~RPtt---d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~  193 (299)
                      .|.++.+..+.......   +.+.+.+..++..       ..+.+|||+|||+|.+++.++.. +.+|++||+|+.++ +
T Consensus       258 ~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~-------~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av-~  328 (431)
T TIGR00479       258 GDLSFSLSARDFFQVNSGQNEKLVDRALEALEL-------QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESV-E  328 (431)
T ss_pred             CCEEEEECCCceeecCHHHHHHHHHHHHHHhcc-------CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHH-H
Confidence            36666665544433222   2333334343321       24579999999999999987665 45899999999998 9


Q ss_pred             HHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       194 ~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .+++|++.+++. +++++++|+.+++....   .....||+|++|||+..
T Consensus       329 ~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~---~~~~~~D~vi~dPPr~G  374 (431)
T TIGR00479       329 KAQQNAELNGIA-NVEFLAGTLETVLPKQP---WAGQIPDVLLLDPPRKG  374 (431)
T ss_pred             HHHHHHHHhCCC-ceEEEeCCHHHHHHHHH---hcCCCCCEEEECcCCCC
Confidence            999999999985 48999999988764321   12357999999999864

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.34  E-value=1.1e-11  Score=120.81  Aligned_cols=76  Identities=24%  Similarity=0.408  Sum_probs=66.2

Q ss_pred             CCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      +.+|||+|||||.+|+.++. .|+.+|+++|+|+.|+ +.+++|++.|++.+ .+++++|+..++..       .++||+
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-------~~~fD~  128 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLEN-EKVFNKDANALLHE-------ERKFDV  128 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCc-eEEEhhhHHHHHhh-------cCCCCE
Confidence            46899999999999999865 5777899999999998 99999999999865 67999999887642       257999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |++|||
T Consensus       129 V~lDP~  134 (382)
T PRK04338        129 VDIDPF  134 (382)
T ss_pred             EEECCC
Confidence            999996

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.34  E-value=8.1e-12  Score=110.15  Aligned_cols=94  Identities=19%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (299)
Q Consensus       131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~  209 (299)
                      .|...+|-..++.|..       .++.+++|+|||||++++|++..| ..+|+++|.|++++ +.+++|++++|++ +++
T Consensus        17 ~TK~EIRal~ls~L~~-------~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-~~~~~N~~~fg~~-n~~   87 (187)
T COG2242          17 MTKEEIRALTLSKLRP-------RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-ELIERNAARFGVD-NLE   87 (187)
T ss_pred             CcHHHHHHHHHHhhCC-------CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCC-cEE
Confidence            5888899888898876       368899999999999999987433 45899999999998 9999999999975 499


Q ss_pred             EEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      ++.+|+.+.+...       ..||.||+.==
T Consensus        88 vv~g~Ap~~L~~~-------~~~daiFIGGg  111 (187)
T COG2242          88 VVEGDAPEALPDL-------PSPDAIFIGGG  111 (187)
T ss_pred             EEeccchHhhcCC-------CCCCEEEECCC
Confidence            9999999987532       37999998643

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.33  E-value=3.2e-12  Score=110.95  Aligned_cols=84  Identities=23%  Similarity=0.309  Sum_probs=61.9

Q ss_pred             EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      .|+|+|||.|.-.|..+..+ .+|++||+|+..+ ++++.|++..|+.++++++++|+.+.+....    ....||+||+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~----~~~~~D~vFl   75 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRLK----SNKIFDVVFL   75 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEEEE
T ss_pred             EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc----ccccccEEEE
Confidence            69999999999999877764 5799999999998 9999999999998899999999998764321    1122899999


Q ss_pred             cCCCCCCCeE
Q 022298          238 TPPYTAVDYE  247 (299)
Q Consensus       238 DPPY~~~~~~  247 (299)
                      +||++..+|.
T Consensus        76 SPPWGGp~Y~   85 (163)
T PF09445_consen   76 SPPWGGPSYS   85 (163)
T ss_dssp             ---BSSGGGG
T ss_pred             CCCCCCcccc
Confidence            9999986653

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=2.8e-12  Score=108.96  Aligned_cols=103  Identities=17%  Similarity=0.237  Sum_probs=83.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~  209 (299)
                      -||...++.++...+.+-.+   +++|.+++|||||+|.+++.+.-.++..|+++|++++|+ ++..+|++.+.++  +.
T Consensus        26 Y~T~p~iAasM~~~Ih~Tyg---diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvq--id   99 (185)
T KOG3420|consen   26 YPTRPHIAASMLYTIHNTYG---DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQ--ID   99 (185)
T ss_pred             CCCcHHHHHHHHHHHHhhhc---cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhh--hh
Confidence            45555577777777655422   478999999999999999866556889999999999998 9999999999875  57


Q ss_pred             EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298          210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD  245 (299)
Q Consensus       210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~  245 (299)
                      ++++|..+...       .++.||.+++||||+...
T Consensus       100 lLqcdildle~-------~~g~fDtaviNppFGTk~  128 (185)
T KOG3420|consen  100 LLQCDILDLEL-------KGGIFDTAVINPPFGTKK  128 (185)
T ss_pred             eeeeeccchhc-------cCCeEeeEEecCCCCccc
Confidence            89999877542       258899999999999743

>PLN02672 methionine S-methyltransferase

Probab=99.33  E-value=8.3e-12  Score=134.29  Aligned_cols=117  Identities=13%  Similarity=0.087  Sum_probs=89.7

Q ss_pred             eeCCeEEecCCC-CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHH
Q 022298          115 KARRKKLLSPKG-MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVS  192 (299)
Q Consensus       115 k~~Gr~L~~p~~-~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~  192 (299)
                      .|+|+.+.+-++ ..+||.|+.+.+. ++.....     ...+.+|||+|||||.+++.++.+. ..+|+++|+|+.|+ 
T Consensus        83 ~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~-----~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al-  155 (1082)
T PLN02672         83 NRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDS-----IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAV-  155 (1082)
T ss_pred             EecCCceeeCCCcccCchhHHHHHHH-HHhcccc-----cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHH-
Confidence            367888887665 4589999988877 3432110     1246799999999999999887753 46899999999998 


Q ss_pred             HHHHHHHHHhCCC---------------CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          193 NVLIPNLEWTGFL---------------DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       193 ~~a~~N~~~~g~~---------------~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      +.+++|++.++++               ++++++++|+.+.+..      ...+||+|+.||||-..
T Consensus       156 ~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~------~~~~fDlIVSNPPYI~~  216 (1082)
T PLN02672        156 KVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD------NNIELDRIVGCIPQILN  216 (1082)
T ss_pred             HHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc------cCCceEEEEECCCcCCC
Confidence            9999999987542               4689999998876421      12379999999999864

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.30  E-value=7e-12  Score=119.83  Aligned_cols=100  Identities=27%  Similarity=0.333  Sum_probs=81.7

Q ss_pred             CCCC--HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          129 VRPM--MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       129 ~RPt--td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      .+|+  ..++.+++.|....       .+|..|||.|||||++-+||--.|+ +|+++|++.+++ +.++.|++.+++.+
T Consensus       176 ~~p~s~~P~lAR~mVNLa~v-------~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv-~gak~Nl~~y~i~~  246 (347)
T COG1041         176 FRPGSMDPRLARAMVNLARV-------KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMV-RGAKINLEYYGIED  246 (347)
T ss_pred             cCcCCcCHHHHHHHHHHhcc-------ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHH-hhhhhhhhhhCcCc
Confidence            4554  35788999998765       4688999999999999999999998 599999999998 99999999999876


Q ss_pred             cEEEEEc-chhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298          207 VSSIHTV-RVETFLERAEQFVGKDGPFDYMSVTPPYTAVD  245 (299)
Q Consensus       207 ~~~vi~~-D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~  245 (299)
                       +.++.. |+...-  +     .+..+|.|.+||||+...
T Consensus       247 -~~~~~~~Da~~lp--l-----~~~~vdaIatDPPYGrst  278 (347)
T COG1041         247 -YPVLKVLDATNLP--L-----RDNSVDAIATDPPYGRST  278 (347)
T ss_pred             -eeEEEecccccCC--C-----CCCccceEEecCCCCccc
Confidence             555555 876542  1     234699999999999743

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.25  E-value=2.4e-11  Score=108.76  Aligned_cols=80  Identities=20%  Similarity=0.319  Sum_probs=62.0

Q ss_pred             CCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++..|+|+|||.|.+++.+++ +.+..|+++|+||.|+ +.+++|++.|++.+++.++++|+.+++.        ...||
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~~d  171 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIRLNKVENRIEVINGDAREFLP--------EGKFD  171 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHHHTT-TTTEEEEES-GGG-----------TT-EE
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccccC
Confidence            588999999999999999887 3456899999999998 9999999999999999999999998864        37899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      -|+|+.|...
T Consensus       172 rvim~lp~~~  181 (200)
T PF02475_consen  172 RVIMNLPESS  181 (200)
T ss_dssp             EEEE--TSSG
T ss_pred             EEEECChHHH
Confidence            9999999765

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.25  E-value=5.9e-11  Score=114.23  Aligned_cols=108  Identities=16%  Similarity=0.223  Sum_probs=85.3

Q ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Q 022298          118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLI  196 (299)
Q Consensus       118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~  196 (299)
                      +..+...++.+.++..|.-.+.+++.+...       ...+|||+|||+|.+++.++.++ ..+|+++|+|+.++ +.++
T Consensus       166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~-------~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al-~~A~  237 (342)
T PRK09489        166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH-------TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL-ESSR  237 (342)
T ss_pred             CEEEEeCCCCCCCCCCCHHHHHHHHhcccc-------CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH-HHHH
Confidence            556777777776777777667777766532       34589999999999999988875 34799999999998 9999


Q ss_pred             HHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       197 ~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      +|++.+++.  .+++.+|+....         .++||+|++||||..+
T Consensus       238 ~nl~~n~l~--~~~~~~D~~~~~---------~~~fDlIvsNPPFH~g  274 (342)
T PRK09489        238 ATLAANGLE--GEVFASNVFSDI---------KGRFDMIISNPPFHDG  274 (342)
T ss_pred             HHHHHcCCC--CEEEEccccccc---------CCCccEEEECCCccCC
Confidence            999999875  456778875432         3689999999999864

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.24  E-value=2.8e-11  Score=104.51  Aligned_cols=77  Identities=18%  Similarity=0.165  Sum_probs=64.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.++||+|||+|.++.++++++ .+|++||+|+.++ +.+++|+..   .++++++++|+.++..       ....||+
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~-~~~~~~~~~---~~~v~ii~~D~~~~~~-------~~~~~d~   80 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLA-PRLREKFAA---ADNLTVIHGDALKFDL-------PKLQPYK   80 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHH-HHHHHHhcc---CCCEEEEECchhcCCc-------cccCCCE
Confidence            46799999999999999999995 5799999999998 999999854   2458899999987631       1246999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |+.||||..
T Consensus        81 vi~n~Py~~   89 (169)
T smart00650       81 VVGNLPYNI   89 (169)
T ss_pred             EEECCCccc
Confidence            999999985

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.24  E-value=5.6e-11  Score=94.39  Aligned_cols=76  Identities=24%  Similarity=0.241  Sum_probs=64.0

Q ss_pred             CCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      +.+|||+|||+|.++++++. ....+|++||+|+.++ +.+++|+...+..++++++++|+ ....      ...++||+
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~i~~~~~d~-~~~~------~~~~~~D~   73 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEML-EIARERAAEEGLSDRITFVQGDA-EFDP------DFLEPFDL   73 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHHHHHTTTTTTEEEEESCC-HGGT------TTSSCEEE
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECcc-ccCc------ccCCCCCE
Confidence            67999999999999999988 2444799999999998 99999997788878899999999 3221      12467999


Q ss_pred             EEEcC
Q 022298          235 MSVTP  239 (299)
Q Consensus       235 I~iDP  239 (299)
                      |+++-
T Consensus        74 v~~~~   78 (112)
T PF12847_consen   74 VICSG   78 (112)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99988

...

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=3e-11  Score=119.78  Aligned_cols=125  Identities=17%  Similarity=0.199  Sum_probs=95.4

Q ss_pred             EEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHH
Q 022298          111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWV  190 (299)
Q Consensus       111 Ii~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~A  190 (299)
                      +|.-.+.|.++.++.+.+..--+. ..|.+++.+..+.+.   -.+..+||+|||||.+|+ ++++|+.+|++||+++.|
T Consensus       343 ~I~E~l~~ltF~iSp~AFFQ~Nt~-~aevLys~i~e~~~l---~~~k~llDv~CGTG~igl-ala~~~~~ViGvEi~~~a  417 (534)
T KOG2187|consen  343 YITESLLGLTFRISPGAFFQTNTS-AAEVLYSTIGEWAGL---PADKTLLDVCCGTGTIGL-ALARGVKRVIGVEISPDA  417 (534)
T ss_pred             EEEeecCCeEEEECCchhhccCcH-HHHHHHHHHHHHhCC---CCCcEEEEEeecCCceeh-hhhccccceeeeecChhh
Confidence            345567899999888765433333 567778877765432   246889999999999999 688999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee-EEEEcCCCCCC
Q 022298          191 VSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD-YMSVTPPYTAV  244 (299)
Q Consensus       191 l~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD-lI~iDPPY~~~  244 (299)
                      + +.|++|++.||++| ++++++.+++.+..+.  ......-+ ++++|||...-
T Consensus       418 V-~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~--~~~~~~~~~v~iiDPpR~Gl  468 (534)
T KOG2187|consen  418 V-EDAEKNAQINGISN-ATFIVGQAEDLFPSLL--TPCCDSETLVAIIDPPRKGL  468 (534)
T ss_pred             c-chhhhcchhcCccc-eeeeecchhhccchhc--ccCCCCCceEEEECCCcccc
Confidence            9 99999999999987 8999998887765442  11112335 88999999763

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.21  E-value=8.5e-11  Score=102.20  Aligned_cols=76  Identities=24%  Similarity=0.400  Sum_probs=65.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+|. +|+++|+|+.++ +.+++|++.++.  +++++.+|+.+..         .++||+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~---------~~~fD~   85 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAV-KELRENAKLNNV--GLDVVMTDLFKGV---------RGKFDV   85 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEccccccc---------CCcccE
Confidence            467899999999999999888887 899999999998 999999998876  3788889976542         258999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++||||..
T Consensus        86 Vi~n~p~~~   94 (179)
T TIGR00537        86 ILFNPPYLP   94 (179)
T ss_pred             EEECCCCCC
Confidence            999999964

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.21  E-value=1.3e-10  Score=111.41  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=74.3

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+|.+|+|+|||.|.++|.++..|+..|+++|+||.|+ +.+++|++.|++.+++..+++|+..+....       ..+|
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~aD  258 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPILGDAREVAPEL-------GVAD  258 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEeccHHHhhhcc-------ccCC
Confidence            35899999999999999999999987899999999998 999999999999988999999999987532       6799


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      -|+|+-|...
T Consensus       259 rIim~~p~~a  268 (341)
T COG2520         259 RIIMGLPKSA  268 (341)
T ss_pred             EEEeCCCCcc
Confidence            9999999764

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.19  E-value=1.6e-10  Score=102.42  Aligned_cols=95  Identities=25%  Similarity=0.239  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      .|...+|...+..+..       ..+.+|||+|||+|.++++++.. | ..+|+++|+++.++ +.+++|++.+++.+++
T Consensus        23 ~t~~~~r~~~l~~l~~-------~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~-~~a~~n~~~~g~~~~v   94 (198)
T PRK00377         23 MTKEEIRALALSKLRL-------RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI-NLTRRNAEKFGVLNNI   94 (198)
T ss_pred             CCHHHHHHHHHHHcCC-------CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCCe
Confidence            5667787766665543       36789999999999999998764 3 45899999999998 9999999999966668


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      +++.+|+.+++...      .+.||.||++.
T Consensus        95 ~~~~~d~~~~l~~~------~~~~D~V~~~~  119 (198)
T PRK00377         95 VLIKGEAPEILFTI------NEKFDRIFIGG  119 (198)
T ss_pred             EEEEechhhhHhhc------CCCCCEEEECC
Confidence            89999988765432      36899999975

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.19  E-value=1.8e-10  Score=105.76  Aligned_cols=92  Identities=22%  Similarity=0.195  Sum_probs=71.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 022298          124 PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (299)
Q Consensus       124 p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g  203 (299)
                      +.+.+.+||+..+.+.+-..+         ..+.+|||+|||+|.+++.++..|+.+|+++|+|+.++ +.+++|++.++
T Consensus        97 afgtg~h~tt~~~l~~l~~~~---------~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l-~~A~~n~~~~~  166 (250)
T PRK00517         97 AFGTGTHPTTRLCLEALEKLV---------LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV-EAARENAELNG  166 (250)
T ss_pred             ccCCCCCHHHHHHHHHHHhhc---------CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcC
Confidence            556677899887766654332         25789999999999999988888988899999999998 99999999988


Q ss_pred             CCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          204 FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       204 ~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      +.+.+.+..+|               .+||+|++|..
T Consensus       167 ~~~~~~~~~~~---------------~~fD~Vvani~  188 (250)
T PRK00517        167 VELNVYLPQGD---------------LKADVIVANIL  188 (250)
T ss_pred             CCceEEEccCC---------------CCcCEEEEcCc
Confidence            75444332221               26999998863

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.18  E-value=6.4e-11  Score=114.64  Aligned_cols=81  Identities=20%  Similarity=0.244  Sum_probs=70.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCC----------------------------------------EEEEEeCCHHHHHHH
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCS----------------------------------------EVHFVEMDPWVVSNV  194 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~----------------------------------------~V~~VD~n~~Al~~~  194 (299)
                      .+..++|++||||++.|||+-++..                                        ..+++|+|++++ +.
T Consensus       191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i-~~  269 (381)
T COG0116         191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI-EG  269 (381)
T ss_pred             CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH-HH
Confidence            3568999999999999999987742                                        377999999998 99


Q ss_pred             HHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          195 LIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       195 a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++.|++..|+.+.+++.++|+.++-.       ..+.+|+|++||||+.
T Consensus       270 Ak~NA~~AGv~d~I~f~~~d~~~l~~-------~~~~~gvvI~NPPYGe  311 (381)
T COG0116         270 AKANARAAGVGDLIEFKQADATDLKE-------PLEEYGVVISNPPYGE  311 (381)
T ss_pred             HHHHHHhcCCCceEEEEEcchhhCCC-------CCCcCCEEEeCCCcch
Confidence            99999999999999999999887632       1158999999999996

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.18  E-value=2.5e-10  Score=99.91  Aligned_cols=93  Identities=25%  Similarity=0.208  Sum_probs=76.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      -.|.+.+++.+++.+..       ..+.+|||+|||+|.+++++++++ ..+|+++|+|+.++ +.+++|++.+++. ++
T Consensus        13 ~~~~~~~r~~~~~~l~~-------~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~n~~~~~~~-~i   83 (187)
T PRK08287         13 PMTKEEVRALALSKLEL-------HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDAL-RLIKENRQRFGCG-NI   83 (187)
T ss_pred             CCchHHHHHHHHHhcCC-------CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCC-Ce
Confidence            36778899888888854       257899999999999999988764 35899999999998 9999999999875 48


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      +++++|+...+         .+.||+|+++-.
T Consensus        84 ~~~~~d~~~~~---------~~~~D~v~~~~~  106 (187)
T PRK08287         84 DIIPGEAPIEL---------PGKADAIFIGGS  106 (187)
T ss_pred             EEEecCchhhc---------CcCCCEEEECCC
Confidence            89988874321         257999999854

>PHA03412 putative methyltransferase; Provisional

Probab=99.17  E-value=4.9e-11  Score=109.19  Aligned_cols=74  Identities=19%  Similarity=0.215  Sum_probs=60.5

Q ss_pred             CCCEEEEECCccchHHHHHHHc----CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR----GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr----Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+|||+|||||.+++.++.+    +..+|++||+|+.++ +++++|+.      ++.++++|+..+.        ..+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-~~Ar~n~~------~~~~~~~D~~~~~--------~~~  113 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-KLGKRIVP------EATWINADALTTE--------FDT  113 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-HHHHhhcc------CCEEEEcchhccc--------ccC
Confidence            3679999999999999987763    344899999999998 99999863      2678889987532        135


Q ss_pred             CeeEEEEcCCCCC
Q 022298          231 PFDYMSVTPPYTA  243 (299)
Q Consensus       231 ~fDlI~iDPPY~~  243 (299)
                      +||+|++||||..
T Consensus       114 ~FDlIIsNPPY~~  126 (241)
T PHA03412        114 LFDMAISNPPFGK  126 (241)
T ss_pred             CccEEEECCCCCC
Confidence            8999999999995

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.15  E-value=1.3e-10  Score=121.35  Aligned_cols=101  Identities=22%  Similarity=0.272  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC--------------------------------
Q 022298          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--------------------------------  178 (299)
Q Consensus       131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa--------------------------------  178 (299)
                      |..+.+..++..... .     ...+..++|+|||||++.|||+.++.                                
T Consensus       172 pl~etlAaa~l~~a~-w-----~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~  245 (702)
T PRK11783        172 PLKENLAAAILLRSG-W-----PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQ  245 (702)
T ss_pred             CCcHHHHHHHHHHcC-C-----CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHH
Confidence            444556666654322 1     02468999999999999999976311                                


Q ss_pred             -----------CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          179 -----------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       179 -----------~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                                 .+++++|+|+.++ +.+++|++.+|+.+.+++.++|+.++...     ...+.||+|++||||..
T Consensus       246 ~~~~~~~~~~~~~i~G~Did~~av-~~A~~N~~~~g~~~~i~~~~~D~~~~~~~-----~~~~~~d~IvtNPPYg~  315 (702)
T PRK11783        246 ERARAGLAELPSKFYGSDIDPRVI-QAARKNARRAGVAELITFEVKDVADLKNP-----LPKGPTGLVISNPPYGE  315 (702)
T ss_pred             HHHhhcccccCceEEEEECCHHHH-HHHHHHHHHcCCCcceEEEeCChhhcccc-----cccCCCCEEEECCCCcC
Confidence                       2599999999998 99999999999988889999998875321     11246999999999986

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.14  E-value=7.6e-10  Score=97.66  Aligned_cols=98  Identities=18%  Similarity=0.102  Sum_probs=78.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      +.++|...++..+++.+..       ..+.+|||+|||+|.++++++.. +..+|+++|+|+.++ +.+++|++.++.. 
T Consensus        20 ~~p~t~~~v~~~l~~~l~~-------~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~-~~a~~n~~~~~~~-   90 (196)
T PRK07402         20 GIPLTKREVRLLLISQLRL-------EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVV-NLIRRNCDRFGVK-   90 (196)
T ss_pred             CCCCCHHHHHHHHHHhcCC-------CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-
Confidence            4578888899888888853       25789999999999999998753 335799999999998 9999999999885 


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      +++++.+|+.+.+...      ...+|.+++|..
T Consensus        91 ~v~~~~~d~~~~~~~~------~~~~d~v~~~~~  118 (196)
T PRK07402         91 NVEVIEGSAPECLAQL------APAPDRVCIEGG  118 (196)
T ss_pred             CeEEEECchHHHHhhC------CCCCCEEEEECC
Confidence            4889999987654321      235788888753

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.11  E-value=4.5e-10  Score=107.25  Aligned_cols=140  Identities=16%  Similarity=0.110  Sum_probs=87.4

Q ss_pred             ccccccceEEEEeeeeCCeEE-ecCCCCCCCCCHHHHH--HHHHHHHHhc--CCCCCCCCCCEEEEECCccchHHHHHHH
Q 022298          101 EERTTHRLLQVLGGKARRKKL-LSPKGMDVRPMMEVVK--GAAFDILQSA--GGCPASLRPGRWLDLYSGTGSVGIEAIS  175 (299)
Q Consensus       101 ~p~~~~~~mrIi~Gk~~Gr~L-~~p~~~~~RPttd~Vr--ealfn~L~~~--~~~~~~~~~~~VLDLfaGSGalgIEAlS  175 (299)
                      +|.....+-+.+--...|... .+|.+.-.-|-.-|+-  ..+.+.|...  ...+ .-.+.++||+|||+|.+..-++.
T Consensus        56 ~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p-~~~~~~vLDIGtGag~I~~lLa~  134 (321)
T PRK11727         56 NPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIP-RGANVRVLDIGVGANCIYPLIGV  134 (321)
T ss_pred             CHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCC-CCCCceEEEecCCccHHHHHHHh
Confidence            444443333333334556663 6788865444443422  2233333221  0000 01357999999999988766554


Q ss_pred             c-CCCEEEEEeCCHHHHHHHHHHHHHHh-CCCCcEEEEE-cchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298          176 R-GCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHT-VRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD  245 (299)
Q Consensus       176 r-Ga~~V~~VD~n~~Al~~~a~~N~~~~-g~~~~~~vi~-~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~  245 (299)
                      + ...+++++|+|+.|+ +.+++|++.+ ++.++++++. .|...+....   ....+.||+|++||||....
T Consensus       135 ~~~~~~~~atDId~~Al-~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i---~~~~~~fDlivcNPPf~~s~  203 (321)
T PRK11727        135 HEYGWRFVGSDIDPQAL-ASAQAIISANPGLNGAIRLRLQKDSKAIFKGI---IHKNERFDATLCNPPFHASA  203 (321)
T ss_pred             hCCCCEEEEEeCCHHHH-HHHHHHHHhccCCcCcEEEEEccchhhhhhcc---cccCCceEEEEeCCCCcCcc
Confidence            3 234799999999998 9999999999 8988888764 4444433221   11246899999999998643

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.09  E-value=5.2e-10  Score=103.77  Aligned_cols=80  Identities=20%  Similarity=0.268  Sum_probs=66.5

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|..++.++.+  ....|+++|+++..+ +.+++|++.+++.+ +++++.|+..+...       .+.|
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~~~-------~~~f  141 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVLN-VAVTNFDGRVFGAA-------VPKF  141 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCCc-EEEecCCHHHhhhh-------ccCC
Confidence            5789999999999999887653  234799999999998 99999999999865 88999998765321       2569


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |.|++|||+..
T Consensus       142 D~Vl~D~Pcsg  152 (264)
T TIGR00446       142 DAILLDAPCSG  152 (264)
T ss_pred             CEEEEcCCCCC
Confidence            99999999874

>PHA03411 putative methyltransferase; Provisional

Probab=99.07  E-value=3.9e-10  Score=105.41  Aligned_cols=74  Identities=24%  Similarity=0.342  Sum_probs=61.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ...+|||+|||+|.+++.++.+. ..+|++||+|+.++ +.+++|..      +++++++|+.++..        ..+||
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-~~Ar~n~~------~v~~v~~D~~e~~~--------~~kFD  128 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-RIGKRLLP------EAEWITSDVFEFES--------NEKFD  128 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhCc------CCEEEECchhhhcc--------cCCCc
Confidence            35799999999999999887753 45899999999998 99988741      36789999987641        36899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|++||||..
T Consensus       129 lIIsNPPF~~  138 (279)
T PHA03411        129 VVISNPPFGK  138 (279)
T ss_pred             EEEEcCCccc
Confidence            9999999985

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.05  E-value=6.7e-10  Score=110.10  Aligned_cols=81  Identities=14%  Similarity=0.198  Sum_probs=68.2

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|..++.++.+  +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.++....      .+.|
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~------~~~f  321 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLTN-IETKALDARKVHEKF------AEKF  321 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCCcccccchh------cccC
Confidence            4689999999999999988774  345899999999998 99999999999866 899999987754221      2579


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+|++|||+..
T Consensus       322 D~Vl~D~Pcsg  332 (444)
T PRK14902        322 DKILVDAPCSG  332 (444)
T ss_pred             CEEEEcCCCCC
Confidence            99999999763

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.03  E-value=1.7e-09  Score=98.74  Aligned_cols=84  Identities=12%  Similarity=0.054  Sum_probs=67.9

Q ss_pred             CCCEEEEECCccchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS--rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ...+|||+|||+|.-++..+.  .+..+|+++|+|++++ +.+++|++.+|+.++++++.+|+.+.+..+.. ....++|
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~-~~~~~~f  145 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSDALSALDQLLN-NDPKPEF  145 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh-CCCCCCC
Confidence            578999999999987665443  3456899999999998 99999999999988899999999998765410 0113589


Q ss_pred             eEEEEcCC
Q 022298          233 DYMSVTPP  240 (299)
Q Consensus       233 DlI~iDPP  240 (299)
                      |+||+|.+
T Consensus       146 D~VfiDa~  153 (234)
T PLN02781        146 DFAFVDAD  153 (234)
T ss_pred             CEEEECCC
Confidence            99999953

>PRK14968 putative methyltransferase; Provisional

Probab=99.03  E-value=1.9e-09  Score=93.09  Aligned_cols=79  Identities=23%  Similarity=0.373  Sum_probs=66.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc-EEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~-~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.++||+|||+|.+++.++.++ .+++++|.++.++ +.+++|++.++..++ +.++.+|+.+.+        ....||
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~d   92 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAV-ECAKCNAKLNNIRNNGVEVIRSDLFEPF--------RGDKFD   92 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEeccccccc--------cccCce
Confidence            57799999999999999988886 4799999999998 999999998887654 778888876533        124799


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|++||||..
T Consensus        93 ~vi~n~p~~~  102 (188)
T PRK14968         93 VILFNPPYLP  102 (188)
T ss_pred             EEEECCCcCC
Confidence            9999999965

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.02  E-value=1.1e-09  Score=108.04  Aligned_cols=81  Identities=17%  Similarity=0.225  Sum_probs=67.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||+|..+++++.++. .+|+++|+++.++ +.+++|++.+|+.  ++++++|+.+.....     ..++||
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l-~~~~~n~~~~g~~--~~~~~~D~~~~~~~~-----~~~~fD  315 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRL-ERVRENLQRLGLK--ATVIVGDARDPAQWW-----DGQPFD  315 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCC--eEEEEcCcccchhhc-----ccCCCC
Confidence            578999999999999999888753 5899999999998 9999999999874  578899987643211     135799


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      .|++||||..
T Consensus       316 ~Vl~D~Pcs~  325 (427)
T PRK10901        316 RILLDAPCSA  325 (427)
T ss_pred             EEEECCCCCc
Confidence            9999999864

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.00  E-value=2.4e-09  Score=101.14  Aligned_cols=78  Identities=18%  Similarity=0.173  Sum_probs=67.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|+++.+++.++. +|+++|+|+.++ +.+++|+...+..++++++++|+.+..         ...||.
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li-~~l~~~~~~~~~~~~v~ii~~Dal~~~---------~~~~d~  104 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMV-AELKKRFQNSPLASKLEVIEGDALKTE---------FPYFDV  104 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHH-HHHHHHHHhcCCCCcEEEEECCHhhhc---------ccccCE
Confidence            578999999999999999888865 699999999998 999999988775567999999987642         246899


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |+.|+||..
T Consensus       105 VvaNlPY~I  113 (294)
T PTZ00338        105 CVANVPYQI  113 (294)
T ss_pred             EEecCCccc
Confidence            999999985

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.00  E-value=2.5e-09  Score=105.89  Aligned_cols=80  Identities=16%  Similarity=0.164  Sum_probs=67.0

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|..++.++..  +..+|+++|+++..+ +.+++|++.+|+.+ ++++++|+..+....      .+.|
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~------~~~f  308 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLSS-IEIKIADAERLTEYV------QDTF  308 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCCe-EEEEECchhhhhhhh------hccC
Confidence            5789999999999999877664  345799999999998 99999999999864 889999987653221      3579


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |.|++|||+.
T Consensus       309 D~Vl~DaPCs  318 (431)
T PRK14903        309 DRILVDAPCT  318 (431)
T ss_pred             CEEEECCCCC
Confidence            9999999995

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.00  E-value=5.4e-09  Score=83.81  Aligned_cols=78  Identities=21%  Similarity=0.148  Sum_probs=63.7

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.++++++++ +..+|+++|.++.++ +.+++|++.++..+ ++++.+|+...+...      .++||
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~D   90 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL-RLIERNARRFGVSN-IVIVEGDAPEALEDS------LPEPD   90 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH-HHHHHHHHHhCCCc-eEEEeccccccChhh------cCCCC
Confidence            4679999999999999999886 346899999999998 99999999988754 788888876533221      35899


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|+++.+
T Consensus        91 ~v~~~~~   97 (124)
T TIGR02469        91 RVFIGGS   97 (124)
T ss_pred             EEEECCc
Confidence            9999764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.00  E-value=3.3e-09  Score=89.63  Aligned_cols=79  Identities=16%  Similarity=0.143  Sum_probs=65.2

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|.+++.++.+  ...++++||+|+.++ +.++++++.+++. +++++++|+.+ +...     ..+.|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i-~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~-----~~~~~   74 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMI-EYAKKRAKELGLD-NIEFIQGDIED-LPQE-----LEEKF   74 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHH-HHHHHHHHHTTST-TEEEEESBTTC-GCGC-----SSTTE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHH-HHhhccccccccc-ccceEEeehhc-cccc-----cCCCe
Confidence            4789999999999999988842  245799999999998 9999999999987 59999999988 3210     01689


Q ss_pred             eEEEEcCCC
Q 022298          233 DYMSVTPPY  241 (299)
Q Consensus       233 DlI~iDPPY  241 (299)
                      |+|++++++
T Consensus        75 D~I~~~~~l   83 (152)
T PF13847_consen   75 DIIISNGVL   83 (152)
T ss_dssp             EEEEEESTG
T ss_pred             eEEEEcCch
Confidence            999999887

...

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.98  E-value=4e-09  Score=94.56  Aligned_cols=80  Identities=16%  Similarity=0.016  Sum_probs=65.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|.++..++.+..  .+|++||+++.++ +.+++|++.+++. +++++.+|+.+.+.       ....|
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~-~~A~~~~~~~g~~-~v~~~~~d~~~~~~-------~~~~f  147 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA-EKAERRLRKLGLD-NVIVIVGDGTQGWE-------PLAPY  147 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHCCCC-CeEEEECCcccCCc-------ccCCC
Confidence            578999999999999987666532  3699999999998 9999999999985 48899999876432       13589


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+|++|++...
T Consensus       148 D~Ii~~~~~~~  158 (215)
T TIGR00080       148 DRIYVTAAGPK  158 (215)
T ss_pred             CEEEEcCCccc
Confidence            99999987543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.96  E-value=6.6e-09  Score=92.06  Aligned_cols=93  Identities=24%  Similarity=0.174  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~  212 (299)
                      +..++.+++.+.....+   .++.+|||+|||+|.+++.++. ....+|+++|.++.++ +.+++|++.+++.+ +++++
T Consensus        27 ~~~~~~~~d~l~l~~~l---~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l-~~A~~~~~~~~l~~-i~~~~  101 (187)
T PRK00107         27 ELWERHILDSLAIAPYL---PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKI-AFLREVAAELGLKN-VTVVH  101 (187)
T ss_pred             HHHHHHHHHHHHHHhhc---CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHcCCCC-EEEEe
Confidence            35666776765432111   1378999999999999998765 3445799999999998 99999999999866 99999


Q ss_pred             cchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          213 VRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       213 ~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      +|+.++.       . .++||+|+++-
T Consensus       102 ~d~~~~~-------~-~~~fDlV~~~~  120 (187)
T PRK00107        102 GRAEEFG-------Q-EEKFDVVTSRA  120 (187)
T ss_pred             ccHhhCC-------C-CCCccEEEEcc
Confidence            9987742       1 36899999963

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.96  E-value=2.2e-09  Score=96.91  Aligned_cols=108  Identities=16%  Similarity=0.193  Sum_probs=86.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~  209 (299)
                      --|.+++++++-+.....      .....++|.|||.|.-.+-.+.+|+ .|++||+||.-+ .++++|++..|+.++++
T Consensus        75 svTpe~ia~~iA~~v~~~------~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikI-a~AkhNaeiYGI~~rIt  146 (263)
T KOG2730|consen   75 SVTPEKIAEHIANRVVAC------MNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKI-ACARHNAEVYGVPDRIT  146 (263)
T ss_pred             EeccHHHHHHHHHHHHHh------cCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHH-HHHhccceeecCCceeE
Confidence            345556667766555432      2457899999999999999888888 599999999998 99999999999999999


Q ss_pred             EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCeEE
Q 022298          210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEV  248 (299)
Q Consensus       210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~~~  248 (299)
                      +++||+.+....+. +  ....+|+||+-||++...|..
T Consensus       147 FI~GD~ld~~~~lq-~--~K~~~~~vf~sppwggp~y~~  182 (263)
T KOG2730|consen  147 FICGDFLDLASKLK-A--DKIKYDCVFLSPPWGGPSYLR  182 (263)
T ss_pred             EEechHHHHHHHHh-h--hhheeeeeecCCCCCCcchhh
Confidence            99999988776542 2  234589999999999877654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.94  E-value=3.7e-09  Score=104.96  Aligned_cols=79  Identities=14%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|..++.++.+  +..+|+++|+|+.++ +.+++|++.+|+. +++++++|+.++.        ....|
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~~-~v~~~~~Da~~~~--------~~~~f  319 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGIT-IIETIEGDARSFS--------PEEQP  319 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCCC-eEEEEeCcccccc--------cCCCC
Confidence            5789999999999998876653  334799999999998 9999999999985 4889999987653        13579


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |.|++|||+..
T Consensus       320 D~Vl~D~Pcsg  330 (445)
T PRK14904        320 DAILLDAPCTG  330 (445)
T ss_pred             CEEEEcCCCCC
Confidence            99999999854

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.93  E-value=5.4e-09  Score=96.61  Aligned_cols=87  Identities=17%  Similarity=0.141  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~  215 (299)
                      +.+.+.+.+..       ..+.+|||+|||+|.++++++.++. +|+++|+|+.++ +.+++|+..   .++++++++|+
T Consensus        17 ~~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~-~~l~~~~~~---~~~v~ii~~D~   84 (258)
T PRK14896         17 VVDRIVEYAED-------TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLA-EFLRDDEIA---AGNVEIIEGDA   84 (258)
T ss_pred             HHHHHHHhcCC-------CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHH-HHHHHHhcc---CCCEEEEEecc
Confidence            55555554432       3578999999999999999988864 799999999998 999988754   24589999998


Q ss_pred             hhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          216 ETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       216 ~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .++.         ...||.|+.||||..
T Consensus        85 ~~~~---------~~~~d~Vv~NlPy~i  103 (258)
T PRK14896         85 LKVD---------LPEFNKVVSNLPYQI  103 (258)
T ss_pred             ccCC---------chhceEEEEcCCccc
Confidence            7642         145899999999985

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.91  E-value=4e-09  Score=98.23  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D  214 (299)
                      .+.+.+.+.+..       .++.+|||+|||+|.++..++.++. +|+++|+|+.++ +.+++|+..    ++++++++|
T Consensus        29 ~i~~~i~~~l~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~-~~~~~~~~~----~~v~~i~~D   95 (272)
T PRK00274         29 NILDKIVDAAGP-------QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLA-PILAETFAE----DNLTIIEGD   95 (272)
T ss_pred             HHHHHHHHhcCC-------CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHH-HHHHHhhcc----CceEEEECh
Confidence            355555555532       3578999999999999999988876 799999999998 999888742    458899999


Q ss_pred             hhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          215 VETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       215 ~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +.++.-.       .-.+|.|+.||||..
T Consensus        96 ~~~~~~~-------~~~~~~vv~NlPY~i  117 (272)
T PRK00274         96 ALKVDLS-------ELQPLKVVANLPYNI  117 (272)
T ss_pred             hhcCCHH-------HcCcceEEEeCCccc
Confidence            8875211       011599999999975

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.90  E-value=7.2e-09  Score=102.58  Aligned_cols=84  Identities=18%  Similarity=0.163  Sum_probs=67.8

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|..++.++.+  +..+|+++|+++..+ +.+++|++.+|+.+ ++++++|+..+....   ....+.|
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~---~~~~~~f  326 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLKS-IKILAADSRNLLELK---PQWRGYF  326 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCCe-EEEEeCChhhccccc---ccccccC
Confidence            5789999999999999887764  234799999999998 99999999999875 889999987653210   0013579


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |.|++|||+..
T Consensus       327 D~Vl~DaPCSg  337 (434)
T PRK14901        327 DRILLDAPCSG  337 (434)
T ss_pred             CEEEEeCCCCc
Confidence            99999999754

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.88  E-value=1.5e-08  Score=90.46  Aligned_cols=80  Identities=23%  Similarity=0.211  Sum_probs=65.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||||.++..++.. + ..+|+++|+++.++ +.+++|++.+++.++++++.+|+.+.+.       ...+|
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~-~~a~~~l~~~~~~~~v~~~~~d~~~~~~-------~~~~f  143 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGYWGVVEVYHGDGKRGLE-------KHAPF  143 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEEEECCcccCCc-------cCCCc
Confidence            5689999999999999776653 2 34799999999998 9999999999987778999999876432       13589


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+|+++-...
T Consensus       144 D~Ii~~~~~~  153 (205)
T PRK13944        144 DAIIVTAAAS  153 (205)
T ss_pred             cEEEEccCcc
Confidence            9999997643

>PRK00811 spermidine synthase; Provisional

Probab=98.88  E-value=1.2e-08  Score=95.72  Aligned_cols=81  Identities=22%  Similarity=0.249  Sum_probs=67.7

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C--CCcEEEEEcchhhHHHHHhhhcCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F--LDVSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g--~--~~~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      ...+|||+|||+|.++.+++++ +..+|++||+|+..+ +.+++++...+  .  ..+++++.+|+..++...      .
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv-~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~  148 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVV-EVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------E  148 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHH-HHHHHHhHHhccccccCCceEEEECchHHHHhhC------C
Confidence            4679999999999999999987 678999999999998 99999987543  2  357899999999988542      4


Q ss_pred             CCeeEEEEcC--CCC
Q 022298          230 GPFDYMSVTP--PYT  242 (299)
Q Consensus       230 ~~fDlI~iDP--PY~  242 (299)
                      ++||+|++|.  |+.
T Consensus       149 ~~yDvIi~D~~dp~~  163 (283)
T PRK00811        149 NSFDVIIVDSTDPVG  163 (283)
T ss_pred             CcccEEEECCCCCCC
Confidence            6899999994  553

>PLN02476 O-methyltransferase

Probab=98.88  E-value=2.9e-08  Score=93.13  Aligned_cols=87  Identities=16%  Similarity=0.118  Sum_probs=71.1

Q ss_pred             CCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      ....+|||+|+|+|..++.++.. + ..+++.+|.|++.+ +.+++|++..|+.++++++.+|+.+.+..+.. ....++
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~-~~~~~~  194 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSMIQ-NGEGSS  194 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh-cccCCC
Confidence            35789999999999999987652 1 33699999999998 99999999999998899999999998865410 011358


Q ss_pred             eeEEEEcCCCC
Q 022298          232 FDYMSVTPPYT  242 (299)
Q Consensus       232 fDlI~iDPPY~  242 (299)
                      ||+||+|.+-.
T Consensus       195 FD~VFIDa~K~  205 (278)
T PLN02476        195 YDFAFVDADKR  205 (278)
T ss_pred             CCEEEECCCHH
Confidence            99999999843

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.86  E-value=2e-08  Score=89.96  Aligned_cols=90  Identities=21%  Similarity=0.240  Sum_probs=71.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 022298          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (299)
Q Consensus       131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~v  210 (299)
                      +..+.+++.+++++...     ...+.+|||+|||+|.++..++.+++ +|+++|+|+.++ +.+++++...+..+++++
T Consensus        36 ~~~~~~~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i-~~a~~~~~~~~~~~~i~~  108 (219)
T TIGR02021        36 EGRAAMRRKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMV-QMARNRAQGRDVAGNVEF  108 (219)
T ss_pred             HHHHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEE
Confidence            44556777777777631     13578999999999999999888876 799999999998 999999987776556888


Q ss_pred             EEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          211 HTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       211 i~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      ..+|+...          .++||+|++
T Consensus       109 ~~~d~~~~----------~~~fD~ii~  125 (219)
T TIGR02021       109 EVNDLLSL----------CGEFDIVVC  125 (219)
T ss_pred             EECChhhC----------CCCcCEEEE
Confidence            88987653          257998875

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.86  E-value=1.1e-08  Score=101.02  Aligned_cols=83  Identities=13%  Similarity=0.143  Sum_probs=64.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|..++.++.+ +..+|+++|+++..+ +.+++|++.+|+...+++..+|.......     ...++||
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-----~~~~~fD  311 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLTIKAETKDGDGRGPSQW-----AENEQFD  311 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEecccccccccc-----ccccccC
Confidence            5789999999999999987764 445799999999998 99999999999863344466776432210     0136799


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      .|++|||+..
T Consensus       312 ~VllDaPcSg  321 (426)
T TIGR00563       312 RILLDAPCSA  321 (426)
T ss_pred             EEEEcCCCCC
Confidence            9999999875

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.86  E-value=1.9e-08  Score=92.38  Aligned_cols=78  Identities=19%  Similarity=0.249  Sum_probs=66.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.+++|++..++.++++++++|+.++...      ..+.||+
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l-~~a~~~~~~~g~~~~v~~~~~d~~~l~~~------~~~~fD~  115 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMI-QRAKQAAEAKGVSDNMQFIHCAAQDIAQH------LETPVDL  115 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccceEEEEcCHHHHhhh------cCCCCCE
Confidence            467999999999999999888876 699999999998 99999999988877789999999876422      1468999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |++.-.
T Consensus       116 V~~~~v  121 (255)
T PRK11036        116 ILFHAV  121 (255)
T ss_pred             EEehhH
Confidence            997654

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.86  E-value=5.3e-09  Score=98.44  Aligned_cols=103  Identities=18%  Similarity=0.133  Sum_probs=69.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc--------CCCEEEEEeCCHHHHHHHHHHHHH
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------GCSEVHFVEMDPWVVSNVLIPNLE  200 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr--------Ga~~V~~VD~n~~Al~~~a~~N~~  200 (299)
                      .-.|+.-+.+.+..++..       ..+.+|+|+|||||++-+++..+        ...+++++|+++.++ .+++.|+.
T Consensus        27 ~~~TP~~i~~l~~~~~~~-------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~-~la~~nl~   98 (311)
T PF02384_consen   27 QFYTPREIVDLMVKLLNP-------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV-ALAKLNLL   98 (311)
T ss_dssp             GC---HHHHHHHHHHHTT--------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH-HHHHHHHH
T ss_pred             eeehHHHHHHHHHhhhhc-------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH-HHHHhhhh
Confidence            345667777777777753       35678999999999999988762        455799999999998 99999998


Q ss_pred             HhCCCCc-EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          201 WTGFLDV-SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       201 ~~g~~~~-~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      ..+.... ..+..+|.......     ....+||+|++||||...
T Consensus        99 l~~~~~~~~~i~~~d~l~~~~~-----~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen   99 LHGIDNSNINIIQGDSLENDKF-----IKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HTTHHCBGCEEEES-TTTSHSC-----TST--EEEEEEE--CTCE
T ss_pred             hhcccccccccccccccccccc-----ccccccccccCCCCcccc
Confidence            7765432 35788886543210     113689999999999985

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.84  E-value=2e-09  Score=98.10  Aligned_cols=83  Identities=29%  Similarity=0.307  Sum_probs=70.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||.|.|-|..+|||+.|||.+|+-||.|+..+ +++.-|==.-++. ..++++.+|+.++.+...     +..||
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-eLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-----D~sfD  207 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-ELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-----DESFD  207 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-EeeccCCCCccccccccEEecccHHHHHhcCC-----ccccc
Confidence            6899999999999999999999999999999999998 8887774322322 247899999999987653     57899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      .|+-|||.-.
T Consensus       208 aIiHDPPRfS  217 (287)
T COG2521         208 AIIHDPPRFS  217 (287)
T ss_pred             eEeeCCCccc
Confidence            9999999765

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.80  E-value=3.3e-08  Score=88.79  Aligned_cols=90  Identities=17%  Similarity=0.139  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi  211 (299)
                      ..+...+...+..       .++.+|||+|||||.++..++.. |. .+|+++|++++.+ +.+++|++.+++. +++++
T Consensus        62 p~~~~~~~~~l~~-------~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~-~~a~~~l~~~g~~-~v~~~  132 (212)
T PRK13942         62 IHMVAIMCELLDL-------KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELA-EKAKKTLKKLGYD-NVEVI  132 (212)
T ss_pred             HHHHHHHHHHcCC-------CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CeEEE
Confidence            3344445455542       35789999999999999766554 32 4899999999998 9999999999875 48999


Q ss_pred             EcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          212 TVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       212 ~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      ++|+.....       ....||+|+++=
T Consensus       133 ~gd~~~~~~-------~~~~fD~I~~~~  153 (212)
T PRK13942        133 VGDGTLGYE-------ENAPYDRIYVTA  153 (212)
T ss_pred             ECCcccCCC-------cCCCcCEEEECC
Confidence            999865431       236899999874

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.77  E-value=6e-08  Score=85.79  Aligned_cols=80  Identities=14%  Similarity=0.128  Sum_probs=65.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ...++||+|||+|.++++++.+. ...+++||+++.++ +.+++|++..++. +++++++|+.++....    ...+.+|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~----~~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGLK-NLHVLCGDANELLDKF----FPDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCCC-CEEEEccCHHHHHHhh----CCCCcee
Confidence            35699999999999999887763 34799999999998 9999999998886 5899999998875432    1235799


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      .|++++|
T Consensus        90 ~v~~~~p   96 (194)
T TIGR00091        90 KVFLNFP   96 (194)
T ss_pred             EEEEECC
Confidence            9999865

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.76  E-value=7.5e-08  Score=86.44  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~  213 (299)
                      .++.+.+.+..       ..+.+|||+|||+|.++..++.. | ..+|+++|+++.++ +.+++|++..+.. +++++++
T Consensus        33 ~~~~~l~~l~~-------~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~-~v~~~~~  103 (231)
T TIGR02752        33 WRKDTMKRMNV-------QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML-SVGRQKVKDAGLH-NVELVHG  103 (231)
T ss_pred             HHHHHHHhcCC-------CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHhcCCC-ceEEEEe
Confidence            44555555532       24789999999999999877654 3 34799999999998 9999999888774 5889999


Q ss_pred             chhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          214 RVETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       214 D~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                      |+.++.       ...++||+|+++-..
T Consensus       104 d~~~~~-------~~~~~fD~V~~~~~l  124 (231)
T TIGR02752       104 NAMELP-------FDDNSFDYVTIGFGL  124 (231)
T ss_pred             chhcCC-------CCCCCccEEEEeccc
Confidence            987642       124689999987554

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.75  E-value=6.8e-08  Score=88.78  Aligned_cols=88  Identities=19%  Similarity=0.254  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~  213 (299)
                      .+|+.+.+.+..       .+|.+|||+|||||-+++..+.. |..+|+++|+|+.++ +.+++-+...+..+ ++++.+
T Consensus        38 ~Wr~~~i~~~~~-------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML-~~a~~k~~~~~~~~-i~fv~~  108 (238)
T COG2226          38 LWRRALISLLGI-------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML-EVAREKLKKKGVQN-VEFVVG  108 (238)
T ss_pred             HHHHHHHHhhCC-------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH-HHHHHHhhccCccc-eEEEEe
Confidence            467777666653       25899999999999999987654 556899999999998 99999998888777 999999


Q ss_pred             chhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          214 RVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       214 D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      |++...       -+++.||+|.+.
T Consensus       109 dAe~LP-------f~D~sFD~vt~~  126 (238)
T COG2226         109 DAENLP-------FPDNSFDAVTIS  126 (238)
T ss_pred             chhhCC-------CCCCccCEEEee
Confidence            998752       346899999874

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.74  E-value=1.3e-07  Score=90.32  Aligned_cols=93  Identities=18%  Similarity=0.131  Sum_probs=70.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC----
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF----  204 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~----  204 (299)
                      .|+..+.+.+.+.+++...+    +..+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.+++|.+..+.    
T Consensus       122 ~~~~~~~~v~~~l~~l~~~~----~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml-~~A~~~~~~~~~~~~~  195 (315)
T PLN02585        122 IRLGHAQTVEKVLLWLAEDG----SLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMV-AEAERRAKEALAALPP  195 (315)
T ss_pred             cccChHHHHHHHHHHHHhcC----CCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhccccccc
Confidence            46666666667777776421    13578999999999999999888886 699999999998 999999876522    


Q ss_pred             CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       205 ~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      ...+++...|+..+          .++||+|++
T Consensus       196 ~~~~~f~~~Dl~~l----------~~~fD~Vv~  218 (315)
T PLN02585        196 EVLPKFEANDLESL----------SGKYDTVTC  218 (315)
T ss_pred             ccceEEEEcchhhc----------CCCcCEEEE
Confidence            12366777886542          367999875

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.74  E-value=3.4e-08  Score=99.91  Aligned_cols=112  Identities=13%  Similarity=0.125  Sum_probs=74.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC---------CCEEEEEeCCHHHHHHHHHHHH
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG---------CSEVHFVEMDPWVVSNVLIPNL  199 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG---------a~~V~~VD~n~~Al~~~a~~N~  199 (299)
                      .-.|...+.+.+.+++....+........+|||+|||+|++.+.++.+.         ...++++|+|+.++ ..++.|+
T Consensus         5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~-~~a~~~l   83 (524)
T TIGR02987         5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLL-KRAKKLL   83 (524)
T ss_pred             ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHH-HHHHHHH
Confidence            3567777888888776432100000135699999999999999887532         14689999999998 9999999


Q ss_pred             HHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       200 ~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      ..++..+ ..+.+.|........  .....+.||+|+.||||...
T Consensus        84 ~~~~~~~-~~i~~~d~l~~~~~~--~~~~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987        84 GEFALLE-INVINFNSLSYVLLN--IESYLDLFDIVITNPPYGRL  125 (524)
T ss_pred             hhcCCCC-ceeeecccccccccc--cccccCcccEEEeCCCcccc
Confidence            8876222 456666544321100  00112579999999999973

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.73  E-value=1.1e-07  Score=84.88  Aligned_cols=92  Identities=22%  Similarity=0.273  Sum_probs=70.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 022298          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (299)
Q Consensus       131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~v  210 (299)
                      ...+.+.+.++.++....    ...+.+|||+|||+|.++..++..|. +|+++|+++.++ +.++++....+..+++.+
T Consensus        43 ~~~~~~~~~~~~~l~~~~----~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i-~~a~~~~~~~~~~~~i~~  116 (230)
T PRK07580         43 AGHQRMRDTVLSWLPADG----DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMV-EEARERAPEAGLAGNITF  116 (230)
T ss_pred             chHHHHHHHHHHHHHhcC----CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccCcEE
Confidence            334556666777765421    13567999999999999999888886 599999999998 999999988877566888


Q ss_pred             EEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          211 HTVRVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       211 i~~D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      ..+|+...          .+.||+|++.
T Consensus       117 ~~~d~~~~----------~~~fD~v~~~  134 (230)
T PRK07580        117 EVGDLESL----------LGRFDTVVCL  134 (230)
T ss_pred             EEcCchhc----------cCCcCEEEEc
Confidence            88884321          3679999864

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.73  E-value=7.6e-08  Score=85.78  Aligned_cols=80  Identities=16%  Similarity=0.094  Sum_probs=62.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++.+. ..+|++||+|+.++ +.+++|++.++.. +++++++|+.+.+...    ...+.||
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i-~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~----~~~~~~D  113 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGV-GKALKKIEEEGLT-NLRLLCGDAVEVLLDM----FPDGSLD  113 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHH-HHHHHHHHHcCCC-CEEEEecCHHHHHHHH----cCccccc
Confidence            46799999999999999877653 34799999999998 9999999988874 4899999983333211    1246799


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|+++.|
T Consensus       114 ~V~~~~~  120 (202)
T PRK00121        114 RIYLNFP  120 (202)
T ss_pred             eEEEECC
Confidence            9999654

>PRK04457 spermidine synthase; Provisional

Probab=98.73  E-value=7.9e-08  Score=89.31  Aligned_cols=78  Identities=18%  Similarity=0.155  Sum_probs=64.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ...+|||+|||+|+++..++.+ +..++++||+|+..+ +.+++++...+..++++++.+|+.+++...      .++||
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------~~~yD  138 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVI-AVARNHFELPENGERFEVIEADGAEYIAVH------RHSTD  138 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHcCCCCCCCceEEEECCHHHHHHhC------CCCCC
Confidence            4679999999999999887654 445799999999998 999999765554467899999999987642      36899


Q ss_pred             EEEEcC
Q 022298          234 YMSVTP  239 (299)
Q Consensus       234 lI~iDP  239 (299)
                      +|++|.
T Consensus       139 ~I~~D~  144 (262)
T PRK04457        139 VILVDG  144 (262)
T ss_pred             EEEEeC
Confidence            999995

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.72  E-value=1.9e-07  Score=83.97  Aligned_cols=103  Identities=18%  Similarity=0.245  Sum_probs=77.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      .+..+.....++..+...      ....+||++|+|+|.-++..+.. + ..+++.+|.|++.+ +.+++|++..|+.++
T Consensus        26 ~~~i~~~~g~lL~~l~~~------~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~   98 (205)
T PF01596_consen   26 QMSISPETGQLLQMLVRL------TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDR   98 (205)
T ss_dssp             GGSHHHHHHHHHHHHHHH------HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGG
T ss_pred             CCccCHHHHHHHHHHHHh------cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCc
Confidence            344455555566665442      35789999999999999876642 1 24799999999998 999999999999889


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      ++++.+|+.+++..+..- ...++||+||+|-.
T Consensus        99 I~~~~gda~~~l~~l~~~-~~~~~fD~VFiDa~  130 (205)
T PF01596_consen   99 IEVIEGDALEVLPELAND-GEEGQFDFVFIDAD  130 (205)
T ss_dssp             EEEEES-HHHHHHHHHHT-TTTTSEEEEEEEST
T ss_pred             EEEEEeccHhhHHHHHhc-cCCCceeEEEEccc
Confidence            999999999998765310 11258999999985

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00417 speE spermidine synthase

Probab=98.71  E-value=4.5e-07  Score=84.33  Aligned_cols=81  Identities=19%  Similarity=0.218  Sum_probs=66.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g--~-~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ...+|||+|||+|.++.++++++ ..++++||+|+..+ +.+++++...+  + ..+++++.+|+.+++...      .+
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi-~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------~~  144 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI-ELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------EN  144 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH-HHHHHHhHhhcccccCCceEEEECchHHHHHhC------CC
Confidence            35699999999999999998876 67899999999998 99999886543  1 246788899999988643      46


Q ss_pred             CeeEEEEcCCCC
Q 022298          231 PFDYMSVTPPYT  242 (299)
Q Consensus       231 ~fDlI~iDPPY~  242 (299)
                      +||+|++|++..
T Consensus       145 ~yDvIi~D~~~~  156 (270)
T TIGR00417       145 TFDVIIVDSTDP  156 (270)
T ss_pred             CccEEEEeCCCC
Confidence            899999999843

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.71  E-value=7.7e-08  Score=85.36  Aligned_cols=75  Identities=21%  Similarity=0.308  Sum_probs=62.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.++++++..++.+ ++++..|+.++.        ..+.||+
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i-~~a~~~~~~~~~~~-v~~~~~d~~~~~--------~~~~fD~   98 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSI-ANLERIKAAENLDN-LHTAVVDLNNLT--------FDGEYDF   98 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHcCCCc-ceEEecChhhCC--------cCCCcCE
Confidence            468999999999999999988886 799999999998 99999999888754 778888876541        1357999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |++.-.
T Consensus        99 I~~~~~  104 (197)
T PRK11207         99 ILSTVV  104 (197)
T ss_pred             EEEecc
Confidence            987654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.70  E-value=1e-07  Score=84.41  Aligned_cols=76  Identities=14%  Similarity=0.205  Sum_probs=61.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.++++++..++.  +.+...|+..+.        ..++||+
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l-~~a~~~~~~~~~~--v~~~~~d~~~~~--------~~~~fD~   97 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASI-ASVLDMKARENLP--LRTDAYDINAAA--------LNEDYDF   97 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHHhCCC--ceeEeccchhcc--------ccCCCCE
Confidence            467999999999999999988886 699999999998 9999999887764  556667764321        1357999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++..++.
T Consensus        98 I~~~~~~~  105 (195)
T TIGR00477        98 IFSTVVFM  105 (195)
T ss_pred             EEEecccc
Confidence            99887764

Part of a tellurite-reducing operon tehA and tehB

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.3e-07  Score=91.17  Aligned_cols=80  Identities=24%  Similarity=0.390  Sum_probs=67.2

Q ss_pred             CCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ..+|+|.+||||.-||-.+. -|..+|++-|+||+|+ +++++|++.|...+ ..+++.|+..++...      ...||+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Av-elik~Nv~~N~~~~-~~v~n~DAN~lm~~~------~~~fd~  124 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAV-ELIKENVRLNSGED-AEVINKDANALLHEL------HRAFDV  124 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHH-HHHHHHHHhcCccc-ceeecchHHHHHHhc------CCCccE
Confidence            67999999999999999765 4666899999999998 99999999995444 556779999988642      478999


Q ss_pred             EEEcCCCCCC
Q 022298          235 MSVTPPYTAV  244 (299)
Q Consensus       235 I~iDPPY~~~  244 (299)
                      |-+|| |+..
T Consensus       125 IDiDP-FGSP  133 (380)
T COG1867         125 IDIDP-FGSP  133 (380)
T ss_pred             EecCC-CCCC
Confidence            99998 8763

>PRK03612 spermidine synthase; Provisional

Probab=98.70  E-value=5e-08  Score=98.90  Aligned_cols=82  Identities=21%  Similarity=0.241  Sum_probs=66.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHH--h---CCC-CcEEEEEcchhhHHHHHhhhcC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEW--T---GFL-DVSSIHTVRVETFLERAEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~--~---g~~-~~~~vi~~D~~~~l~~~~~~~~  227 (299)
                      +..+|||+|||+|.+..|+++++. .+|++||+|++.+ +.+++|...  .   .++ ++++++.+|+.+++...     
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-----  370 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-----  370 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-----
Confidence            467999999999999999998764 7999999999998 999996421  1   122 46899999999987543     


Q ss_pred             CCCCeeEEEEcCCCCC
Q 022298          228 KDGPFDYMSVTPPYTA  243 (299)
Q Consensus       228 ~~~~fDlI~iDPPY~~  243 (299)
                       .++||+|++|+|...
T Consensus       371 -~~~fDvIi~D~~~~~  385 (521)
T PRK03612        371 -AEKFDVIIVDLPDPS  385 (521)
T ss_pred             -CCCCCEEEEeCCCCC
Confidence             368999999998653

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.70  E-value=7.2e-08  Score=88.23  Aligned_cols=87  Identities=24%  Similarity=0.255  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~  212 (299)
                      ++|+.+...+..       .++.+|||+|||||.++++++.+ | ..+|+++|+++.++ +.+++.++..+.. ++++++
T Consensus        34 ~wr~~~~~~~~~-------~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML-~~a~~k~~~~~~~-~i~~v~  104 (233)
T PF01209_consen   34 RWRRKLIKLLGL-------RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML-EVARKKLKREGLQ-NIEFVQ  104 (233)
T ss_dssp             ---SHHHHHHT---------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH-HHHHHHHHHTT---SEEEEE
T ss_pred             HHHHHHHhccCC-------CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH-HHHHHHHHhhCCC-CeeEEE
Confidence            355555555433       35789999999999999987764 3 24799999999998 9999999988775 599999


Q ss_pred             cchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          213 VRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       213 ~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      +|+.+.-       ..++.||.|++
T Consensus       105 ~da~~lp-------~~d~sfD~v~~  122 (233)
T PF01209_consen  105 GDAEDLP-------FPDNSFDAVTC  122 (233)
T ss_dssp             -BTTB---------S-TT-EEEEEE
T ss_pred             cCHHHhc-------CCCCceeEEEH
Confidence            9998752       23578999996

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.69  E-value=1.1e-07  Score=84.75  Aligned_cols=78  Identities=19%  Similarity=0.062  Sum_probs=63.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++..+ .+|+++|+++.++ +.+++|++.+++.+ ++++.+|+.+.+.       ..++||+
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~-~~a~~~~~~~~~~~-v~~~~~d~~~~~~-------~~~~fD~  147 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ-WEAKRRLKQLGLHN-VSVRHGDGWKGWP-------AYAPFDR  147 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH-HHHHHHHHHCCCCc-eEEEECCcccCCC-------cCCCcCE
Confidence            57899999999999987655554 4799999999998 99999999998865 8899999754321       1368999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |+++.+..
T Consensus       148 I~~~~~~~  155 (212)
T PRK00312        148 ILVTAAAP  155 (212)
T ss_pred             EEEccCch
Confidence            99998654

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.64  E-value=1.4e-07  Score=74.19  Aligned_cols=69  Identities=26%  Similarity=0.286  Sum_probs=54.6

Q ss_pred             EEEECCccchHHHHHHHc---CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          159 WLDLYSGTGSVGIEAISR---GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       159 VLDLfaGSGalgIEAlSr---Ga-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      |||+|||+|.....++..   |. .+++++|+|+.++ +.++++....+.  .++++++|+.++.. .      .++||+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l-~~~~~~~~~~~~--~~~~~~~D~~~l~~-~------~~~~D~   70 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEML-ELAKKRFSEDGP--KVRFVQADARDLPF-S------DGKFDL   70 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHH-HHHHHHSHHTTT--TSEEEESCTTCHHH-H------SSSEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHH-HHHHHhchhcCC--ceEEEECCHhHCcc-c------CCCeeE
Confidence            799999999999988766   32 6899999999998 999999988666  47899999987532 2      469999


Q ss_pred             EEE
Q 022298          235 MSV  237 (299)
Q Consensus       235 I~i  237 (299)
                      |++
T Consensus        71 v~~   73 (101)
T PF13649_consen   71 VVC   73 (101)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.64  E-value=1.4e-07  Score=90.22  Aligned_cols=75  Identities=13%  Similarity=0.118  Sum_probs=60.8

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ..+.+|||+|||+|.++..++..|+ +|++||.+++++ +.++++.+..+...+++++++|+.++..       ..++||
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~FD  200 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNV-KIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKFD  200 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCCC
Confidence            3577999999999999987777776 699999999998 9999987766554568899999876531       246899


Q ss_pred             EEEE
Q 022298          234 YMSV  237 (299)
Q Consensus       234 lI~i  237 (299)
                      +|++
T Consensus       201 ~Vi~  204 (322)
T PLN02396        201 AVLS  204 (322)
T ss_pred             EEEE
Confidence            9985

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.63  E-value=2.1e-07  Score=87.13  Aligned_cols=74  Identities=19%  Similarity=0.224  Sum_probs=61.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+++|||+|||+|..++.++.+|. +|+++|.|+.++ +.+++|++..++  .+++...|+....        ..++||+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai-~~~~~~~~~~~l--~v~~~~~D~~~~~--------~~~~fD~  187 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSL-ENLQEIAEKENL--NIRTGLYDINSAS--------IQEEYDF  187 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEechhccc--------ccCCccE
Confidence            456999999999999999888886 699999999998 999999998887  3777778876531        1368999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |++.--
T Consensus       188 I~~~~v  193 (287)
T PRK12335        188 ILSTVV  193 (287)
T ss_pred             EEEcch
Confidence            987653

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.62  E-value=1.5e-07  Score=86.64  Aligned_cols=88  Identities=17%  Similarity=0.185  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D  214 (299)
                      .+.+.+.+.+..       .++.+|||+|||+|.++..++.++. +|+++|+|+.++ +.+++|+..   ..+++++++|
T Consensus        16 ~i~~~i~~~~~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~-~~l~~~~~~---~~~v~v~~~D   83 (253)
T TIGR00755        16 SVIQKIVEAANV-------LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLA-EILRKLLSL---YERLEVIEGD   83 (253)
T ss_pred             HHHHHHHHhcCC-------CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHH-HHHHHHhCc---CCcEEEEECc
Confidence            355566565542       3578999999999999999888875 599999999998 899888743   2458899999


Q ss_pred             hhhHHHHHhhhcCCCCCee---EEEEcCCCCC
Q 022298          215 VETFLERAEQFVGKDGPFD---YMSVTPPYTA  243 (299)
Q Consensus       215 ~~~~l~~~~~~~~~~~~fD---lI~iDPPY~~  243 (299)
                      +.++..         ..||   +|+.|+||..
T Consensus        84 ~~~~~~---------~~~d~~~~vvsNlPy~i  106 (253)
T TIGR00755        84 ALKVDL---------PDFPKQLKVVSNLPYNI  106 (253)
T ss_pred             hhcCCh---------hHcCCcceEEEcCChhh
Confidence            876431         2355   9999999974

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.61  E-value=4.6e-07  Score=83.05  Aligned_cols=77  Identities=5%  Similarity=-0.010  Sum_probs=62.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr---Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .+.+|||+|||+|..++.++..   ...+++++|.++.++ +.+++|++.++..++++++++|+.+..         ...
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml-~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  125 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN  125 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence            5789999999999998876552   234799999999998 999999998887767899999987642         245


Q ss_pred             eeEEEEcCCC
Q 022298          232 FDYMSVTPPY  241 (299)
Q Consensus       232 fDlI~iDPPY  241 (299)
                      +|+|++....
T Consensus       126 ~D~vv~~~~l  135 (247)
T PRK15451        126 ASMVVLNFTL  135 (247)
T ss_pred             CCEEehhhHH
Confidence            8998876543

>PLN02244 tocopherol O-methyltransferase

Probab=98.60  E-value=2.3e-07  Score=89.18  Aligned_cols=75  Identities=21%  Similarity=0.225  Sum_probs=62.9

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++.+ |+ +|++||+++.++ +.++++++..+..++++++.+|+.+..       ...+.||
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i-~~a~~~~~~~g~~~~v~~~~~D~~~~~-------~~~~~FD  188 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQA-ARANALAAAQGLSDKVSFQVADALNQP-------FEDGQFD  188 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEcCcccCC-------CCCCCcc
Confidence            5689999999999999988776 55 799999999998 999999998888777899999987531       1246899


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      +|++.
T Consensus       189 ~V~s~  193 (340)
T PLN02244        189 LVWSM  193 (340)
T ss_pred             EEEEC
Confidence            99974

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=4.4e-07  Score=80.04  Aligned_cols=77  Identities=16%  Similarity=0.220  Sum_probs=64.6

Q ss_pred             CCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          156 PGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ..-++++|||||.++-...+.  +.....+.|+||+|+ +..++.++.|+..  +.+++.|+.+.+.        .++.|
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~--~~~V~tdl~~~l~--------~~~VD  112 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVH--IDVVRTDLLSGLR--------NESVD  112 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCc--cceeehhHHhhhc--------cCCcc
Confidence            578999999999998766664  344678999999997 9999999988763  6789999888764        37899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +++.||||.-
T Consensus       113 vLvfNPPYVp  122 (209)
T KOG3191|consen  113 VLVFNPPYVP  122 (209)
T ss_pred             EEEECCCcCc
Confidence            9999999985

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.58  E-value=1.3e-07  Score=86.63  Aligned_cols=73  Identities=21%  Similarity=0.193  Sum_probs=61.1

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      +.+.+|||+|||-|.++..++..|+ .|+++|++++++ +.++.-+...++.  +...+..+++...       .+++||
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I-~~Ak~ha~e~gv~--i~y~~~~~edl~~-------~~~~FD  126 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPI-EVAKLHALESGVN--IDYRQATVEDLAS-------AGGQFD  126 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHH-HHHHHhhhhcccc--ccchhhhHHHHHh-------cCCCcc
Confidence            4689999999999999999999996 699999999998 9999998888874  4566677776542       247999


Q ss_pred             EEEE
Q 022298          234 YMSV  237 (299)
Q Consensus       234 lI~i  237 (299)
                      +|++
T Consensus       127 vV~c  130 (243)
T COG2227         127 VVTC  130 (243)
T ss_pred             EEEE
Confidence            9986

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.58  E-value=2.4e-07  Score=90.43  Aligned_cols=106  Identities=24%  Similarity=0.393  Sum_probs=72.6

Q ss_pred             CCCCCCCHHHHHH---HH---HHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHH
Q 022298          126 GMDVRPMMEVVKG---AA---FDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIP  197 (299)
Q Consensus       126 ~~~~RPttd~Vre---al---fn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~  197 (299)
                      ..+++|.+..=|.   .+   ++......     ....++||..||||.-||-.+..  |+.+|++.|+|++|+ +++++
T Consensus        19 ~vFYNP~~~~nRDlsvl~~~~~~~~~~~~-----~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-~~i~~   92 (377)
T PF02005_consen   19 PVFYNPVMEFNRDLSVLAIRYLAVLKEKR-----KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-ELIKR   92 (377)
T ss_dssp             SSS--GGGHHHHHHHHHH---HHHHHHCH------S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-HHHHH
T ss_pred             CcccCcchhcccceeehhHHHHHHhhhhh-----cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-HHHHH
Confidence            3467998875332   22   34433320     13458999999999999997764  788999999999998 99999


Q ss_pred             HHHHhCCCC-cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          198 NLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       198 N~~~~g~~~-~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      |++.|++.+ ++++.+.|+..++..      ....||+|-+|| |+..
T Consensus        93 N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~fD~IDlDP-fGSp  133 (377)
T PF02005_consen   93 NLELNGLEDERIEVSNMDANVLLYS------RQERFDVIDLDP-FGSP  133 (377)
T ss_dssp             HHHHCT-SGCCEEEEES-HHHHHCH------STT-EEEEEE---SS--
T ss_pred             hHhhccccCceEEEehhhHHHHhhh------ccccCCEEEeCC-CCCc
Confidence            999999987 789999999988732      247899999998 9864

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.56  E-value=4.2e-07  Score=68.20  Aligned_cols=78  Identities=23%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      +++|+|||+|.++..++..+..+++++|.++.++ ..++++.+..+. ...+++..|+.+....      ...+||+|++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~d~i~~   72 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVAL-ELARKAAAALLA-DNVEVLKGDAEELPPE------ADESFDVIIS   72 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHhcccc-cceEEEEcChhhhccc------cCCceEEEEE
Confidence            4899999999999888775667899999999997 788765444433 3578899998876431      1367999999


Q ss_pred             cCCCCC
Q 022298          238 TPPYTA  243 (299)
Q Consensus       238 DPPY~~  243 (299)
                      ++|+..
T Consensus        73 ~~~~~~   78 (107)
T cd02440          73 DPPLHH   78 (107)
T ss_pred             ccceee
Confidence            999764

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.55  E-value=2.2e-07  Score=88.68  Aligned_cols=78  Identities=17%  Similarity=0.154  Sum_probs=69.3

Q ss_pred             CCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       153 ~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+..|||+|||||.++.-|+..||++|++||-+.-|  +.+++-++.|.+.+++.++.|.+++..        ..++.
T Consensus       175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MA--qyA~~Lv~~N~~~~rItVI~GKiEdie--------LPEk~  244 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMA--QYARKLVASNNLADRITVIPGKIEDIE--------LPEKV  244 (517)
T ss_pred             ccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHH--HHHHHHHhcCCccceEEEccCcccccc--------Cchhc
Confidence            47899999999999999999999999999999998865  789999999999999999999988752        24789


Q ss_pred             eEEEEcCC
Q 022298          233 DYMSVTPP  240 (299)
Q Consensus       233 DlI~iDPP  240 (299)
                      |+|+..|-
T Consensus       245 DviISEPM  252 (517)
T KOG1500|consen  245 DVIISEPM  252 (517)
T ss_pred             cEEEeccc
Confidence            99999984

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.55  E-value=5.1e-07  Score=86.48  Aligned_cols=75  Identities=19%  Similarity=0.053  Sum_probs=61.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|.+++.++....  .+|+++|.++.++ +.+++|++.++.. ++.++++|+.+....       ...|
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l-~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-------~~~f  150 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVRRLGIE-NVIFVCGDGYYGVPE-------FAPY  150 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEeCChhhcccc-------cCCc
Confidence            578999999999999988766432  3699999999998 9999999999985 488899997654321       2579


Q ss_pred             eEEEEc
Q 022298          233 DYMSVT  238 (299)
Q Consensus       233 DlI~iD  238 (299)
                      |+|+++
T Consensus       151 D~Ii~~  156 (322)
T PRK13943        151 DVIFVT  156 (322)
T ss_pred             cEEEEC
Confidence            999995

>PLN02366 spermidine synthase

Probab=98.55  E-value=2.2e-06  Score=81.61  Aligned_cols=81  Identities=23%  Similarity=0.304  Sum_probs=66.2

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~--g~-~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ...+||++|||.|.+..+++.. +..+|+.||+|+..+ +.+++.+...  ++ .++++++.+|+..+++..     ..+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi-~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----~~~  164 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVI-DVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----PEG  164 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----cCC
Confidence            4689999999999999998876 467899999999998 9999987653  23 247999999999988642     136


Q ss_pred             CeeEEEEcCCC
Q 022298          231 PFDYMSVTPPY  241 (299)
Q Consensus       231 ~fDlI~iDPPY  241 (299)
                      +||+|++|.+-
T Consensus       165 ~yDvIi~D~~d  175 (308)
T PLN02366        165 TYDAIIVDSSD  175 (308)
T ss_pred             CCCEEEEcCCC
Confidence            89999999643

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.54  E-value=2.5e-07  Score=88.56  Aligned_cols=76  Identities=21%  Similarity=0.218  Sum_probs=66.6

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      +.++.|||+|||||.+++.|+..||.+|++||-+.-+  +.+++.++.|++++.++++++.+++..     +  +-++.|
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~-----L--P~eKVD  129 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIE-----L--PVEKVD  129 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEe-----c--Ccccee
Confidence            5799999999999999999999999999999998865  799999999999999999999988762     1  136888


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      +|+..
T Consensus       130 iIvSE  134 (346)
T KOG1499|consen  130 IIVSE  134 (346)
T ss_pred             EEeeh
Confidence            88853

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.54  E-value=5.3e-07  Score=89.92  Aligned_cols=75  Identities=20%  Similarity=0.196  Sum_probs=58.6

Q ss_pred             CCEEEEECCccchHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          156 PGRWLDLYSGTGSVGIEAISRG-----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrG-----a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      +..|+|+|||+|.++..|+..|     +.+|++||.|+.|+ ..+++-++.++..++++++++|++++-.        ..
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~-~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pe  257 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV-VTLQKRVNANGWGDKVTVIHGDMREVEL--------PE  257 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH-HHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH-HHHHHHHHhcCCCCeEEEEeCcccCCCC--------CC
Confidence            5789999999999998877655     67999999999997 6666666889998899999999998742        36


Q ss_pred             CeeEEEEcC
Q 022298          231 PFDYMSVTP  239 (299)
Q Consensus       231 ~fDlI~iDP  239 (299)
                      ++|+|+.-.
T Consensus       258 kvDIIVSEl  266 (448)
T PF05185_consen  258 KVDIIVSEL  266 (448)
T ss_dssp             -EEEEEE--
T ss_pred             ceeEEEEec
Confidence            899999766

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.53  E-value=8.4e-07  Score=83.09  Aligned_cols=71  Identities=23%  Similarity=0.306  Sum_probs=55.8

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      +|.+|||+|||-|++++.++.+ |+ +|++|.+|+.-. +.+++.++..|+.+++++...|..++          ..+||
T Consensus        62 ~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~-~~a~~~~~~~gl~~~v~v~~~D~~~~----------~~~fD  129 (273)
T PF02353_consen   62 PGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQA-EYARERIREAGLEDRVEVRLQDYRDL----------PGKFD  129 (273)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHH-HHHHHHHHCSTSSSTEEEEES-GGG-------------S-S
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEeecccc----------CCCCC
Confidence            6889999999999999999988 87 699999999998 99999999999999999999997764          24788


Q ss_pred             EEEE
Q 022298          234 YMSV  237 (299)
Q Consensus       234 lI~i  237 (299)
                      .|+.
T Consensus       130 ~IvS  133 (273)
T PF02353_consen  130 RIVS  133 (273)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8774

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.53  E-value=4.4e-07  Score=90.97  Aligned_cols=81  Identities=20%  Similarity=0.242  Sum_probs=67.2

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||.|+-+..++++  +...++++|+++.-+ +.+++|++.+|+.+ +.+.+.|+..+....      ...|
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~------~~~f  184 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSN-VALTHFDGRVFGAAL------PETF  184 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCchhhhhhhc------hhhc
Confidence            6789999999999998887664  234799999999998 99999999999966 788889987654322      3579


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |.|++|+|...
T Consensus       185 D~ILvDaPCSG  195 (470)
T PRK11933        185 DAILLDAPCSG  195 (470)
T ss_pred             CeEEEcCCCCC
Confidence            99999999874

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.50  E-value=1.7e-07  Score=83.22  Aligned_cols=77  Identities=19%  Similarity=0.236  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (299)
Q Consensus       133 td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~  212 (299)
                      .|--|-++|..+-..      .....+.|||+|||.+++-|+.. |.+|++||.||... +++.+|++..|..| ++++.
T Consensus        16 ~D~eRlavF~~ai~~------va~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a-~~a~eN~~v~g~~n-~evv~   86 (252)
T COG4076          16 RDVERLAVFTSAIAE------VAEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA-RLAEENLHVPGDVN-WEVVV   86 (252)
T ss_pred             hhHHHHHHHHHHHHH------HhhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHH-HHhhhcCCCCCCcc-eEEEe
Confidence            344455666554332      34578999999999999977665 88999999999997 99999998888754 89999


Q ss_pred             cchhhH
Q 022298          213 VRVETF  218 (299)
Q Consensus       213 ~D~~~~  218 (299)
                      +|+.++
T Consensus        87 gDA~~y   92 (252)
T COG4076          87 GDARDY   92 (252)
T ss_pred             cccccc
Confidence            998865

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.48  E-value=1.4e-06  Score=80.70  Aligned_cols=76  Identities=17%  Similarity=0.143  Sum_probs=57.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHH--hCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEW--TGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~--~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ++.+|||+|||||.+++.++.+ | ..+|+++|+++.++ +.++++...  .+..++++++++|+.++-       ..++
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml-~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-------~~~~  144 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL-AVAASRQELKAKSCYKNIEWIEGDATDLP-------FDDC  144 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhhhhccCCCeEEEEcccccCC-------CCCC
Confidence            5789999999999999877664 4 24799999999998 899876542  222245889999987641       1246


Q ss_pred             CeeEEEEc
Q 022298          231 PFDYMSVT  238 (299)
Q Consensus       231 ~fDlI~iD  238 (299)
                      .||+|++.
T Consensus       145 sfD~V~~~  152 (261)
T PLN02233        145 YFDAITMG  152 (261)
T ss_pred             CEeEEEEe
Confidence            89999874

>PRK01581 speE spermidine synthase; Validated

Probab=98.48  E-value=6.9e-07  Score=86.73  Aligned_cols=81  Identities=21%  Similarity=0.278  Sum_probs=64.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHH-----HHhCC-CCcEEEEEcchhhHHHHHhhhcC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNL-----EWTGF-LDVSSIHTVRVETFLERAEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~-----~~~g~-~~~~~vi~~D~~~~l~~~~~~~~  227 (299)
                      ...+||++|||+|....+++..+ ..+|++||+|++.+ +.++++-     ....+ ..+++++.+|+.+++...     
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVI-elAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-----  223 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMI-NMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-----  223 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHH-HHHHhccccchhccccCCCCceEEEECcHHHHHHhc-----
Confidence            46799999999999998888764 57899999999998 9998631     11122 357899999999998643     


Q ss_pred             CCCCeeEEEEcCCCC
Q 022298          228 KDGPFDYMSVTPPYT  242 (299)
Q Consensus       228 ~~~~fDlI~iDPPY~  242 (299)
                       .++||+||+|.|-.
T Consensus       224 -~~~YDVIIvDl~DP  237 (374)
T PRK01581        224 -SSLYDVIIIDFPDP  237 (374)
T ss_pred             -CCCccEEEEcCCCc
Confidence             46899999998643

>TIGR00740 methyltransferase, putative

Probab=98.47  E-value=2e-06  Score=77.98  Aligned_cols=74  Identities=8%  Similarity=-0.080  Sum_probs=59.5

Q ss_pred             CCCEEEEECCccchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr---Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .+.+|||+|||+|...+.++.+   ...+++++|+++.++ +.++++++..+...+++++++|+.++.         ...
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  122 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIPVEILCNDIRHVE---------IKN  122 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECChhhCC---------CCC
Confidence            5679999999999999888764   234799999999998 999999987766556889999987642         245


Q ss_pred             eeEEEEc
Q 022298          232 FDYMSVT  238 (299)
Q Consensus       232 fDlI~iD  238 (299)
                      +|+|++.
T Consensus       123 ~d~v~~~  129 (239)
T TIGR00740       123 ASMVILN  129 (239)
T ss_pred             CCEEeee
Confidence            7887764

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=98.47  E-value=2e-07  Score=89.17  Aligned_cols=82  Identities=22%  Similarity=0.202  Sum_probs=64.8

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHH-------HHHHHHHHhCCCCc-EEEEEcchhhHHHHHhhh
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN-------VLIPNLEWTGFLDV-SSIHTVRVETFLERAEQF  225 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~-------~a~~N~~~~g~~~~-~~vi~~D~~~~l~~~~~~  225 (299)
                      .+|..|.|.|.|||++-+.|+.-|| .|++-|||-..+ .       .++.|.+..|...+ ..++.+|....--     
T Consensus       207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~v-ragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~-----  279 (421)
T KOG2671|consen  207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTV-RAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL-----  279 (421)
T ss_pred             CCCCEEecCccccCceeeehhhhcc-eeeccccchhee-ecccCCCcchhHhHHHhCCcchhhheeeecccCcch-----
Confidence            4689999999999999999888898 699999998876 5       57889998886543 3566777654321     


Q ss_pred             cCCCCCeeEEEEcCCCCC
Q 022298          226 VGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~~  243 (299)
                       ..+..||.|++||||+.
T Consensus       280 -rsn~~fDaIvcDPPYGV  296 (421)
T KOG2671|consen  280 -RSNLKFDAIVCDPPYGV  296 (421)
T ss_pred             -hhcceeeEEEeCCCcch
Confidence             12468999999999984

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.47  E-value=1.1e-06  Score=83.93  Aligned_cols=75  Identities=15%  Similarity=0.100  Sum_probs=56.8

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      +.+.+|||+|||+|.+++.++..|+..|+++|.++..+ ...+...+..+...+++++.+|+.+.-       . .+.||
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l-~q~~a~~~~~~~~~~i~~~~~d~e~lp-------~-~~~FD  191 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFL-CQFEAVRKLLGNDQRAHLLPLGIEQLP-------A-LKAFD  191 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHhcCCCCCeEEEeCCHHHCC-------C-cCCcC
Confidence            56889999999999999999999988899999999875 433333233333345888889887642       1 46899


Q ss_pred             EEEE
Q 022298          234 YMSV  237 (299)
Q Consensus       234 lI~i  237 (299)
                      +|++
T Consensus       192 ~V~s  195 (322)
T PRK15068        192 TVFS  195 (322)
T ss_pred             EEEE
Confidence            9997

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.46  E-value=1.9e-06  Score=78.28  Aligned_cols=79  Identities=20%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~-~D~~~~l~~~~~~~~~~~~  231 (299)
                      ..+++|++|.+.|.-++..+.. . ..+++.||.|++.+ +.+++|++..|+.++++++. +|+.+.+...     ..+.
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~~  132 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-EIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDGS  132 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-HHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCCC
Confidence            5789999999999999876642 2 34799999999998 99999999999999888888 5988877641     2589


Q ss_pred             eeEEEEcC
Q 022298          232 FDYMSVTP  239 (299)
Q Consensus       232 fDlI~iDP  239 (299)
                      ||+||+|-
T Consensus       133 fDliFIDa  140 (219)
T COG4122         133 FDLVFIDA  140 (219)
T ss_pred             ccEEEEeC
Confidence            99999985

>PLN02823 spermine synthase

Probab=98.46  E-value=4.3e-06  Score=80.60  Aligned_cols=78  Identities=21%  Similarity=0.216  Sum_probs=65.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g--~-~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ...+||-+|+|.|..+.|+++. +..+|++||+|++.+ +++++++..++  + ..+++++.+|+..++...      .+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------~~  175 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-DFCRKHLTVNREAFCDKRLELIINDARAELEKR------DE  175 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhcccccccccCCceEEEEChhHHHHhhC------CC
Confidence            4579999999999999999984 577899999999998 99999876432  1 357899999999998542      46


Q ss_pred             CeeEEEEcC
Q 022298          231 PFDYMSVTP  239 (299)
Q Consensus       231 ~fDlI~iDP  239 (299)
                      +||+||+|.
T Consensus       176 ~yDvIi~D~  184 (336)
T PLN02823        176 KFDVIIGDL  184 (336)
T ss_pred             CccEEEecC
Confidence            899999995

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=6.9e-07  Score=82.42  Aligned_cols=80  Identities=18%  Similarity=0.124  Sum_probs=67.9

Q ss_pred             CCCCEEEEECCccchHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlS-rG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .++.+|||.|.|||+++..++. .| ..+|+.+|+..+-+ +.+++|++.+++.|++++..+|+.+...        .+.
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~-k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------~~~  163 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSEFGLGDRVTLKLGDVREGID--------EED  163 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHH-HHHHHHHHHhccccceEEEecccccccc--------ccc
Confidence            4689999999999999986552 33 36899999999998 9999999999998888888899887652        358


Q ss_pred             eeEEEEcCCCC
Q 022298          232 FDYMSVTPPYT  242 (299)
Q Consensus       232 fDlI~iDPPY~  242 (299)
                      ||.||+|-|=-
T Consensus       164 vDav~LDmp~P  174 (256)
T COG2519         164 VDAVFLDLPDP  174 (256)
T ss_pred             cCEEEEcCCCh
Confidence            99999999844

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.45  E-value=1.2e-06  Score=80.87  Aligned_cols=77  Identities=23%  Similarity=0.171  Sum_probs=61.8

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++.. |. .+|+++|+++.++ +.+++|.+.+++. +++++.+|+.+..       ...+.|
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l-~~A~~~~~~~g~~-~v~~~~~d~~~l~-------~~~~~f  147 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML-AKARANARKAGYT-NVEFRLGEIEALP-------VADNSV  147 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHH-HHHHHHHHHcCCC-CEEEEEcchhhCC-------CCCCce
Confidence            5789999999999988876653 54 3799999999998 9999999998875 5788889976531       124589


Q ss_pred             eEEEEcCC
Q 022298          233 DYMSVTPP  240 (299)
Q Consensus       233 DlI~iDPP  240 (299)
                      |+|+.+--
T Consensus       148 D~Vi~~~v  155 (272)
T PRK11873        148 DVIISNCV  155 (272)
T ss_pred             eEEEEcCc
Confidence            99998753

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.45  E-value=3e-06  Score=78.40  Aligned_cols=85  Identities=11%  Similarity=0.086  Sum_probs=68.1

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ...++|++|+++|.-++..++. + -.+++.+|.|++.+ +.+++|++..|+.++++++.+|+.+.+..+.......++|
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f  157 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF  157 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence            5689999999999888865532 1 24799999999997 9999999999999999999999999887642100012589


Q ss_pred             eEEEEcCC
Q 022298          233 DYMSVTPP  240 (299)
Q Consensus       233 DlI~iDPP  240 (299)
                      |+||+|--
T Consensus       158 D~iFiDad  165 (247)
T PLN02589        158 DFIFVDAD  165 (247)
T ss_pred             cEEEecCC
Confidence            99999964

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.44  E-value=7.4e-07  Score=77.76  Aligned_cols=85  Identities=26%  Similarity=0.377  Sum_probs=53.7

Q ss_pred             CCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--CCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g--~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ..+.+||+||||+|..|+.++.. |+.+|++-|.++ ++ +.++.|++.|+  ..+++.+...|..+.....  .. ...
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~--~~-~~~  118 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDELDSD--LL-EPH  118 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-HHHH--HH-S-S
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCccccc--cc-ccc
Confidence            56899999999999999998888 778999999999 87 99999999987  4456777776654422111  11 235


Q ss_pred             CeeEEE-EcCCCCC
Q 022298          231 PFDYMS-VTPPYTA  243 (299)
Q Consensus       231 ~fDlI~-iDPPY~~  243 (299)
                      +||+|+ .|-=|..
T Consensus       119 ~~D~IlasDv~Y~~  132 (173)
T PF10294_consen  119 SFDVILASDVLYDE  132 (173)
T ss_dssp             SBSEEEEES--S-G
T ss_pred             cCCEEEEecccchH
Confidence            899988 6776664

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK08317 hypothetical protein; Provisional

Probab=98.44  E-value=2.3e-06  Score=75.85  Aligned_cols=95  Identities=16%  Similarity=0.099  Sum_probs=69.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      ||-....++.++..+..       ..+.+|||+|||+|.++..++.+.  ..+++++|.++..+ +.+++|....  ..+
T Consensus         1 ~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-~~a~~~~~~~--~~~   70 (241)
T PRK08317          1 LPDFRRYRARTFELLAV-------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-ALAKERAAGL--GPN   70 (241)
T ss_pred             CchHHHHHHHHHHHcCC-------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHHHHhhCC--CCc
Confidence            46666777777766653       257899999999999999887653  45799999999998 8898884322  234


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                      +++...|+....       ...+.||+|+++--+
T Consensus        71 ~~~~~~d~~~~~-------~~~~~~D~v~~~~~~   97 (241)
T PRK08317         71 VEFVRGDADGLP-------FPDGSFDAVRSDRVL   97 (241)
T ss_pred             eEEEecccccCC-------CCCCCceEEEEechh
Confidence            778888876531       124689999986433

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.43  E-value=1.5e-06  Score=77.41  Aligned_cols=76  Identities=21%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|.+++.++..+  ..+++++|+++.++ +.+++|+...+..+++.++.+|+.+..       ...+.|
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~  122 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEALP-------FPDNSF  122 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEecccccCC-------CCCCCc
Confidence            46899999999999999988876  36899999999998 999999887666556888888886642       123679


Q ss_pred             eEEEEc
Q 022298          233 DYMSVT  238 (299)
Q Consensus       233 DlI~iD  238 (299)
                      |+|++.
T Consensus       123 D~I~~~  128 (239)
T PRK00216        123 DAVTIA  128 (239)
T ss_pred             cEEEEe
Confidence            999873

>TIGR00452 methyltransferase, putative

Probab=98.43  E-value=1.4e-06  Score=83.15  Aligned_cols=76  Identities=12%  Similarity=0.072  Sum_probs=56.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ..+.+|||+|||+|.+.+.++..|+..|++||.++.++ ..++...+..+...++.+...++.+.-        ....||
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml-~q~~~~~~~~~~~~~v~~~~~~ie~lp--------~~~~FD  190 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFL-CQFEAVRKLLDNDKRAILEPLGIEQLH--------ELYAFD  190 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHHhccCCCeEEEECCHHHCC--------CCCCcC
Confidence            56889999999999999998889988899999999886 544333333333345677778876542        124799


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      +||+.
T Consensus       191 ~V~s~  195 (314)
T TIGR00452       191 TVFSM  195 (314)
T ss_pred             EEEEc
Confidence            99864

Known examples to date are restricted to the proteobacteria.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.41  E-value=1.3e-06  Score=77.87  Aligned_cols=86  Identities=24%  Similarity=0.356  Sum_probs=61.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      ..|+-..|.+++ +.          ++.+++|||+||.|--++.++++|. .|+++|+|+.++ +.+++-++..+++  +
T Consensus        15 ~~~~hs~v~~a~-~~----------~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al-~~l~~~a~~~~l~--i   79 (192)
T PF03848_consen   15 LTPTHSEVLEAV-PL----------LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVAL-EKLQRLAEEEGLD--I   79 (192)
T ss_dssp             B----HHHHHHC-TT----------S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHH-HHHHHHHHHTT-T--E
T ss_pred             CCCCcHHHHHHH-hh----------cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHhhcCce--e
Confidence            455556666553 21          4578999999999999999999998 599999999998 8888877777774  7


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      +....|+.++.        ..+.||+|+.
T Consensus        80 ~~~~~Dl~~~~--------~~~~yD~I~s  100 (192)
T PF03848_consen   80 RTRVADLNDFD--------FPEEYDFIVS  100 (192)
T ss_dssp             EEEE-BGCCBS---------TTTEEEEEE
T ss_pred             EEEEecchhcc--------ccCCcCEEEE
Confidence            88888987653        1367999974

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK04266 fibrillarin; Provisional

Probab=98.41  E-value=2e-06  Score=78.49  Aligned_cols=78  Identities=14%  Similarity=-0.035  Sum_probs=58.0

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||||.+++.++.+ +..+|+++|+++.++ +.+.++++..   .++.++.+|+.......    ...+.||
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml-~~l~~~a~~~---~nv~~i~~D~~~~~~~~----~l~~~~D  143 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPM-RELLEVAEER---KNIIPILADARKPERYA----HVVEKVD  143 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHH-HHHHHHhhhc---CCcEEEECCCCCcchhh----hccccCC
Confidence            5789999999999999988765 334799999999998 8888887653   23778889986421100    0124699


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|+.|-+
T Consensus       144 ~i~~d~~  150 (226)
T PRK04266        144 VIYQDVA  150 (226)
T ss_pred             EEEECCC
Confidence            9998865

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.40  E-value=1.3e-06  Score=78.24  Aligned_cols=69  Identities=17%  Similarity=0.081  Sum_probs=53.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+...+... +..++++||+|+.++ +.+++|..      .+.++++|+.+..        ..++||
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-~~A~~~~~------~~~~~~~d~~~~~--------~~~sfD  107 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-EKAKAYLP------NINIIQGSLFDPF--------KDNFFD  107 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHhhCC------CCcEEEeeccCCC--------CCCCEE
Confidence            4678999999999999887765 445799999999998 89988742      2456778876521        246899


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      +|+++
T Consensus       108 ~V~~~  112 (204)
T TIGR03587       108 LVLTK  112 (204)
T ss_pred             EEEEC
Confidence            99964

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.40  E-value=1.4e-06  Score=77.62  Aligned_cols=69  Identities=26%  Similarity=0.282  Sum_probs=52.8

Q ss_pred             CCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||||||.|.+--.+.. +++ .+++||+|++.+ ..+.+    .|    +.++++|+.+.+...     .++.||
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v-~~cv~----rG----v~Viq~Dld~gL~~f-----~d~sFD   77 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNV-AACVA----RG----VSVIQGDLDEGLADF-----PDQSFD   77 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHH-HHHHH----cC----CCEEECCHHHhHhhC-----CCCCcc
Confidence            589999999999998865544 455 699999999877 33333    24    458999999987654     368999


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      +|++.
T Consensus        78 ~VIls   82 (193)
T PF07021_consen   78 YVILS   82 (193)
T ss_pred             EEehH
Confidence            99974

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.40  E-value=1.8e-06  Score=84.49  Aligned_cols=80  Identities=11%  Similarity=0.091  Sum_probs=66.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+..+||+|||+|.+.+.++.+. ...++|+|+++.++ +.+.+++...++.| +.++++|+..++...     ..+.+|
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~-----~~~s~D  194 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNLKN-LLIINYDARLLLELL-----PSNSVE  194 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCCCc-EEEEECCHHHhhhhC-----CCCcee
Confidence            35689999999999999987763 34699999999998 99999999999866 899999998765432     257899


Q ss_pred             EEEEcCCC
Q 022298          234 YMSVTPPY  241 (299)
Q Consensus       234 lI~iDPPY  241 (299)
                      .|+++.|.
T Consensus       195 ~I~lnFPd  202 (390)
T PRK14121        195 KIFVHFPV  202 (390)
T ss_pred             EEEEeCCC
Confidence            99998764

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.39  E-value=1.8e-06  Score=77.95  Aligned_cols=92  Identities=21%  Similarity=0.190  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~  213 (299)
                      +-..++..|..       .++.+|||+|||||..+--++.. |. .+|++||.++..+ +.+++|++.++..+ ++++.+
T Consensus        60 ~~a~~l~~L~l-------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~~n-v~~~~g  130 (209)
T PF01135_consen   60 MVARMLEALDL-------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGIDN-VEVVVG  130 (209)
T ss_dssp             HHHHHHHHTTC--------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTTHS-EEEEES
T ss_pred             HHHHHHHHHhc-------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhccCc-eeEEEc
Confidence            33344455553       36889999999999988654433 43 3699999999987 99999999999864 889999


Q ss_pred             chhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       214 D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      |....+..       ..+||.|++..-...
T Consensus       131 dg~~g~~~-------~apfD~I~v~~a~~~  153 (209)
T PF01135_consen  131 DGSEGWPE-------EAPFDRIIVTAAVPE  153 (209)
T ss_dssp             -GGGTTGG-------G-SEEEEEESSBBSS
T ss_pred             chhhcccc-------CCCcCEEEEeeccch
Confidence            98765422       368999999876543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.37  E-value=9.9e-07  Score=66.86  Aligned_cols=67  Identities=22%  Similarity=0.259  Sum_probs=50.8

Q ss_pred             EEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       160 LDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      ||+|||+|..+..+++++..+|+++|.++.++ +.++++....+    ..++++|+.++.       -..+.||+|++.
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-~~~~~~~~~~~----~~~~~~d~~~l~-------~~~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-EQARKRLKNEG----VSFRQGDAEDLP-------FPDNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-HHHHHHTTTST----EEEEESBTTSSS-------S-TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHhcccccC----chheeehHHhCc-------cccccccccccc
Confidence            89999999999988888667899999999998 88888765433    458889987652       235789999864

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.37  E-value=2.1e-06  Score=79.38  Aligned_cols=85  Identities=19%  Similarity=0.074  Sum_probs=63.1

Q ss_pred             CCCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .+|.+||+.|.|||+++..++..  ...+|+.+|.+.+.+ +.+++|++.+|+.+++++.+.|+.+.--.    ......
T Consensus        39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~----~~~~~~  113 (247)
T PF08704_consen   39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-EKARKNFERHGLDDNVTVHHRDVCEEGFD----EELESD  113 (247)
T ss_dssp             -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHTTCCTTEEEEES-GGCG--S----TT-TTS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-HHHHHHHHHcCCCCCceeEecceeccccc----ccccCc
Confidence            36899999999999999866542  245899999999998 99999999999988899999998632100    011367


Q ss_pred             eeEEEEcCCCCC
Q 022298          232 FDYMSVTPPYTA  243 (299)
Q Consensus       232 fDlI~iDPPY~~  243 (299)
                      +|.||+|-|--.
T Consensus       114 ~DavfLDlp~Pw  125 (247)
T PF08704_consen  114 FDAVFLDLPDPW  125 (247)
T ss_dssp             EEEEEEESSSGG
T ss_pred             ccEEEEeCCCHH
Confidence            999999999643

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.37  E-value=1.5e-06  Score=79.23  Aligned_cols=73  Identities=15%  Similarity=0.086  Sum_probs=56.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ...+|||+|||+|.++..+..+|. +|+++|+|+.++ +.++++...      ..++++|+....       ...+.||+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l-~~a~~~~~~------~~~~~~d~~~~~-------~~~~~fD~  106 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPML-AQARQKDAA------DHYLAGDIESLP-------LATATFDL  106 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHhhCCC------CCEEEcCcccCc-------CCCCcEEE
Confidence            467999999999999987777775 799999999998 888877421      346788876532       12468999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |+++.+..
T Consensus       107 V~s~~~l~  114 (251)
T PRK10258        107 AWSNLAVQ  114 (251)
T ss_pred             EEECchhh
Confidence            99987754

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.34  E-value=1.9e-06  Score=78.99  Aligned_cols=72  Identities=17%  Similarity=0.111  Sum_probs=56.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.++..++.+. ..+|+++|+++.++ +.++++        .++++++|+.++.        ..+.||
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-~~a~~~--------~~~~~~~d~~~~~--------~~~~fD   91 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-AAARER--------GVDARTGDVRDWK--------PKPDTD   91 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHhc--------CCcEEEcChhhCC--------CCCCce
Confidence            57899999999999999887762 24799999999998 887653        2567889987642        136899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|+++..+..
T Consensus        92 ~v~~~~~l~~  101 (255)
T PRK14103         92 VVVSNAALQW  101 (255)
T ss_pred             EEEEehhhhh
Confidence            9999887543

>PRK04148 hypothetical protein; Provisional

Probab=98.33  E-value=4.1e-06  Score=70.67  Aligned_cols=73  Identities=12%  Similarity=0.059  Sum_probs=56.8

Q ss_pred             CCCEEEEECCccch-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGS-VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGa-lgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.++||+|||+|. ++..+...|. .|+++|+|+.++ +.+++|    +    +.++.+|+++.-...      -+.+|
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV-~~a~~~----~----~~~v~dDlf~p~~~~------y~~a~   79 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV-EKAKKL----G----LNAFVDDLFNPNLEI------YKNAK   79 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHh----C----CeEEECcCCCCCHHH------HhcCC
Confidence            46789999999995 8887777786 699999999998 777665    2    457888987654322      25799


Q ss_pred             EEE-EcCCCCC
Q 022298          234 YMS-VTPPYTA  243 (299)
Q Consensus       234 lI~-iDPPY~~  243 (299)
                      +|+ +.||...
T Consensus        80 liysirpp~el   90 (134)
T PRK04148         80 LIYSIRPPRDL   90 (134)
T ss_pred             EEEEeCCCHHH
Confidence            999 7888775

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.32  E-value=2.2e-06  Score=76.52  Aligned_cols=72  Identities=19%  Similarity=0.090  Sum_probs=58.9

Q ss_pred             CEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298          157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM  235 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI  235 (299)
                      ++|||+|||+|.+++.++... ..+|+++|+++..+ +.+++|++..++.++++++..|+....        ..++||+|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~-~~a~~~~~~~gl~~~i~~~~~d~~~~~--------~~~~fD~I   71 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQA-EVGRERIRALGLQGRIRIFYRDSAKDP--------FPDTYDLV   71 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEecccccCC--------CCCCCCEe
Confidence            379999999999999887753 34799999999998 999999999888888889988875431        12579998


Q ss_pred             EE
Q 022298          236 SV  237 (299)
Q Consensus       236 ~i  237 (299)
                      ++
T Consensus        72 ~~   73 (224)
T smart00828       72 FG   73 (224)
T ss_pred             eh
Confidence            85

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.32  E-value=3.7e-06  Score=75.67  Aligned_cols=76  Identities=18%  Similarity=0.195  Sum_probs=61.2

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ..+.+|||+|||+|.++..++++|+ +++++|.++.++ +.+++|+...+.  .++++..|+.++...      ..++||
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~fD  116 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENI-EVARLHALESGL--KIDYRQTTAEELAAE------HPGQFD  116 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHH-HHHHHHHHHcCC--ceEEEecCHHHhhhh------cCCCcc
Confidence            3578999999999999998888876 699999999998 899999887765  367788888766432      236899


Q ss_pred             EEEEcC
Q 022298          234 YMSVTP  239 (299)
Q Consensus       234 lI~iDP  239 (299)
                      +|++.-
T Consensus       117 ~Ii~~~  122 (233)
T PRK05134        117 VVTCME  122 (233)
T ss_pred             EEEEhh
Confidence            998853

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.31  E-value=2.8e-06  Score=77.73  Aligned_cols=73  Identities=12%  Similarity=0.182  Sum_probs=58.2

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.++..++.+ +..+|++||+++.++ +.++++.      .++.++.+|+..+.        ...+||
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-~~a~~~~------~~~~~~~~d~~~~~--------~~~~fD   95 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-AEARSRL------PDCQFVEADIASWQ--------PPQALD   95 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhC------CCCeEEECchhccC--------CCCCcc
Confidence            4789999999999999887765 345899999999998 8888774      23678889987653        135899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|+++..+.
T Consensus        96 ~v~~~~~l~  104 (258)
T PRK01683         96 LIFANASLQ  104 (258)
T ss_pred             EEEEccChh
Confidence            999998764

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.31  E-value=3.4e-06  Score=79.28  Aligned_cols=71  Identities=21%  Similarity=0.207  Sum_probs=61.9

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      +|.+|||+|||-|++++.|+.+ |+ +|++|++|++.. +.+++-++..|++++++++-.|..++.          ++||
T Consensus        72 ~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~-~~~~~r~~~~gl~~~v~v~l~d~rd~~----------e~fD  139 (283)
T COG2230          72 PGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQL-AYAEKRIAARGLEDNVEVRLQDYRDFE----------EPFD  139 (283)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHH-HHHHHHHHHcCCCcccEEEeccccccc----------cccc
Confidence            6899999999999999999987 55 699999999998 999999999999878999888877653          4588


Q ss_pred             EEEE
Q 022298          234 YMSV  237 (299)
Q Consensus       234 lI~i  237 (299)
                      -|+.
T Consensus       140 rIvS  143 (283)
T COG2230         140 RIVS  143 (283)
T ss_pred             eeee
Confidence            7763

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=98.30  E-value=8.9e-07  Score=82.76  Aligned_cols=73  Identities=18%  Similarity=0.190  Sum_probs=57.6

Q ss_pred             EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      +|+|||||.|++.+.+...|...|+++|+|+.|+ +..+.|....       ++++|+.++....     ....+|+++.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-~~~~~N~~~~-------~~~~Di~~~~~~~-----~~~~~D~l~~   68 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-ETYEANFPNK-------LIEGDITKIDEKD-----FIPDIDLLTG   68 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-HHHHHhCCCC-------CccCccccCchhh-----cCCCCCEEEe
Confidence            6999999999998877778998899999999997 9999986321       4567776654321     0257999999


Q ss_pred             cCCCCC
Q 022298          238 TPPYTA  243 (299)
Q Consensus       238 DPPY~~  243 (299)
                      +||+..
T Consensus        69 gpPCq~   74 (275)
T cd00315          69 GFPCQP   74 (275)
T ss_pred             CCCChh
Confidence            999973

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=4.2e-06  Score=77.82  Aligned_cols=78  Identities=17%  Similarity=0.155  Sum_probs=63.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++..||++|+|.|++..+++.+++ +|++||+|+..+ ..+++...   ..++++++++|+.++--..      ...++.
T Consensus        30 ~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~-~~L~~~~~---~~~n~~vi~~DaLk~d~~~------l~~~~~   98 (259)
T COG0030          30 PGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLA-EVLKERFA---PYDNLTVINGDALKFDFPS------LAQPYK   98 (259)
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHH-HHHHHhcc---cccceEEEeCchhcCcchh------hcCCCE
Confidence            478999999999999999999987 599999999987 88877654   2356899999998763110      016899


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |+.|.||+-
T Consensus        99 vVaNlPY~I  107 (259)
T COG0030          99 VVANLPYNI  107 (259)
T ss_pred             EEEcCCCcc
Confidence            999999985

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=2.9e-06  Score=76.52  Aligned_cols=76  Identities=18%  Similarity=0.166  Sum_probs=62.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .++.+||++|||||..+--.+.. +.+|+.||+++.-+ +.+++|++.+|+.| +.++++|....+.       ...+||
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~-~~A~~~L~~lg~~n-V~v~~gDG~~G~~-------~~aPyD  140 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELA-EQARRNLETLGYEN-VTVRHGDGSKGWP-------EEAPYD  140 (209)
T ss_pred             CCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHH-HHHHHHHHHcCCCc-eEEEECCcccCCC-------CCCCcC
Confidence            36899999999999887544344 34899999999987 99999999999977 9999999876543       236899


Q ss_pred             EEEEcC
Q 022298          234 YMSVTP  239 (299)
Q Consensus       234 lI~iDP  239 (299)
                      .|++.-
T Consensus       141 ~I~Vta  146 (209)
T COG2518         141 RIIVTA  146 (209)
T ss_pred             EEEEee
Confidence            999754

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.28  E-value=6.6e-06  Score=79.43  Aligned_cols=95  Identities=13%  Similarity=0.065  Sum_probs=67.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      ++.++.+++.++..+...      ..+.+|||+|||+|.+++.++.+ +..+|+++|.++.++ +.+++|...    .++
T Consensus        94 ~~~~e~~r~~~l~~~~l~------~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL-~~A~~k~~~----~~i  162 (340)
T PLN02490         94 GHWTEDMRDDALEPADLS------DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPL----KEC  162 (340)
T ss_pred             CcchHHHHHHHHhhcccC------CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhhhc----cCC
Confidence            345666766666554321      24679999999999999887664 445899999999998 888888642    236


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      +++.+|+.+.-       ...+.||+|++.....
T Consensus       163 ~~i~gD~e~lp-------~~~~sFDvVIs~~~L~  189 (340)
T PLN02490        163 KIIEGDAEDLP-------FPTDYADRYVSAGSIE  189 (340)
T ss_pred             eEEeccHHhCC-------CCCCceeEEEEcChhh
Confidence            78889987531       1246799999876543

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.28  E-value=8e-06  Score=76.79  Aligned_cols=83  Identities=17%  Similarity=0.234  Sum_probs=67.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .++.+|||+||+.|+=+..++..  +-..++++|+++..+ +.+++|++.+|..+ +.+...|.........     ...
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~-----~~~  156 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFN-VIVINADARKLDPKKP-----ESK  156 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SS-EEEEESHHHHHHHHHH-----TTT
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCce-EEEEeecccccccccc-----ccc
Confidence            36789999999999988776653  345899999999998 99999999999876 7777789887754432     246


Q ss_pred             eeEEEEcCCCCC
Q 022298          232 FDYMSVTPPYTA  243 (299)
Q Consensus       232 fDlI~iDPPY~~  243 (299)
                      ||.|++|+|...
T Consensus       157 fd~VlvDaPCSg  168 (283)
T PF01189_consen  157 FDRVLVDAPCSG  168 (283)
T ss_dssp             EEEEEEECSCCC
T ss_pred             cchhhcCCCccc
Confidence            999999999986

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.28  E-value=4e-06  Score=83.55  Aligned_cols=73  Identities=12%  Similarity=0.083  Sum_probs=57.7

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++.+ |+ +|+++|+++.++ +.+++|..  +...++++..+|+....       ...++||
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l-~~A~~~~~--~~~~~v~~~~~d~~~~~-------~~~~~fD  334 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMI-SFALERAI--GRKCSVEFEVADCTKKT-------YPDNSFD  334 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHhh--cCCCceEEEEcCcccCC-------CCCCCEE
Confidence            4679999999999999887765 54 799999999998 99999875  33345888999976531       1246899


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      +|++.
T Consensus       335 ~I~s~  339 (475)
T PLN02336        335 VIYSR  339 (475)
T ss_pred             EEEEC
Confidence            99985

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.27  E-value=5.1e-06  Score=74.00  Aligned_cols=75  Identities=19%  Similarity=0.151  Sum_probs=60.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++..++ +++++|.++.++ +.+++|+...+.. ++++...|+.++...      ..++||+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~~~------~~~~~D~  115 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENI-EVAKLHAKKDPLL-KIEYRCTSVEDLAEK------GAKSFDV  115 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEeCCHHHhhcC------CCCCccE
Confidence            478999999999999998877776 599999999998 8999999877653 377888888766421      1368999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |+++
T Consensus       116 i~~~  119 (224)
T TIGR01983       116 VTCM  119 (224)
T ss_pred             EEeh
Confidence            9875

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.26  E-value=3.7e-06  Score=79.61  Aligned_cols=76  Identities=17%  Similarity=0.125  Sum_probs=59.2

Q ss_pred             CCCEEEEECCccchH-HHHHHH-c-CCCEEEEEeCCHHHHHHHHHHHHHH-hCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSV-GIEAIS-R-GCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGal-gIEAlS-r-Ga~~V~~VD~n~~Al~~~a~~N~~~-~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+|+|+|||.|.+ ++-++. . ...+++++|+|++++ +.++++++. .++.+++++..+|+.+...       ..+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai-~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-------~l~  194 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN-DVARRLVSSDPDLSKRMFFHTADVMDVTE-------SLK  194 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHhhhccCccCCcEEEECchhhccc-------ccC
Confidence            578999999998844 332332 2 345799999999998 999999965 7888889999999877431       136


Q ss_pred             CeeEEEEc
Q 022298          231 PFDYMSVT  238 (299)
Q Consensus       231 ~fDlI~iD  238 (299)
                      .||+||++
T Consensus       195 ~FDlVF~~  202 (296)
T PLN03075        195 EYDVVFLA  202 (296)
T ss_pred             CcCEEEEe
Confidence            89999998

>PRK05785 hypothetical protein; Provisional

Probab=98.25  E-value=7.2e-06  Score=74.47  Aligned_cols=68  Identities=16%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||||.++.+++.++..+|+++|.++.++ +.++++.         ..+++|+.+.       .-..++||+
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-~~a~~~~---------~~~~~d~~~l-------p~~d~sfD~  113 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-KMNLVAD---------DKVVGSFEAL-------PFRDKSFDV  113 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-HHHHhcc---------ceEEechhhC-------CCCCCCEEE
Confidence            3679999999999999988777324799999999998 8776531         2356776643       123578999


Q ss_pred             EEEcC
Q 022298          235 MSVTP  239 (299)
Q Consensus       235 I~iDP  239 (299)
                      |++.-
T Consensus       114 v~~~~  118 (226)
T PRK05785        114 VMSSF  118 (226)
T ss_pred             EEecC
Confidence            99844

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.23  E-value=6.8e-06  Score=77.41  Aligned_cols=61  Identities=13%  Similarity=0.174  Sum_probs=53.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~  217 (299)
                      .+.++||+|||+|.++++++.+. ..+++++|. +.++ +.+++|++..++.++++++.+|+++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~gl~~rv~~~~~d~~~  210 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYK  210 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHH-HHHHHHHHhCCccceEEEEecCccC
Confidence            45799999999999999998874 347999998 6787 9999999999998889999999875

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.21  E-value=1e-05  Score=76.78  Aligned_cols=82  Identities=13%  Similarity=0.080  Sum_probs=65.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++..+||+.||.|..+.+++...  ..+|+++|.|+.++ +.+++++..   .++++++++|..++.....   ..-..+
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al-~~ak~~L~~---~~ri~~i~~~f~~l~~~l~---~~~~~v   91 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI-AAAKDRLKP---FGRFTLVHGNFSNLKEVLA---EGLGKV   91 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHhhcc---CCcEEEEeCCHHHHHHHHH---cCCCcc
Confidence            46799999999999999998874  35799999999998 999988755   3579999999988865442   111279


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |.|++|.=...
T Consensus        92 DgIl~DLGvSs  102 (296)
T PRK00050         92 DGILLDLGVSS  102 (296)
T ss_pred             CEEEECCCccc
Confidence            99999986554

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.21  E-value=9.2e-06  Score=75.37  Aligned_cols=72  Identities=18%  Similarity=0.098  Sum_probs=55.5

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||+|..+..++.. |+ +|+++|+++.++ +.++++...   .+++.+..+|+....       ...+.||
T Consensus        52 ~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~-~~a~~~~~~---~~~i~~~~~D~~~~~-------~~~~~FD  119 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMV-NIAKLRNSD---KNKIEFEANDILKKD-------FPENTFD  119 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHH-HHHHHHcCc---CCceEEEECCcccCC-------CCCCCeE
Confidence            5789999999999998876654 44 799999999998 888887643   345888888876421       1246899


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      +|++.
T Consensus       120 ~V~s~  124 (263)
T PTZ00098        120 MIYSR  124 (263)
T ss_pred             EEEEh
Confidence            99984

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.20  E-value=5e-06  Score=73.18  Aligned_cols=74  Identities=20%  Similarity=0.138  Sum_probs=53.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.++...++++|.++.++ +.++++        +++++++|+.+.+...     ..++||+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sfD~   78 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-LACVAR--------GVNVIQGDLDEGLEAF-----PDKSFDY   78 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-HHHHHc--------CCeEEEEEhhhccccc-----CCCCcCE
Confidence            4679999999999998876655444689999999987 666432        2467788876533111     2468999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++.....
T Consensus        79 Vi~~~~l~   86 (194)
T TIGR02081        79 VILSQTLQ   86 (194)
T ss_pred             EEEhhHhH
Confidence            99987654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=7.9e-06  Score=79.26  Aligned_cols=84  Identities=19%  Similarity=0.188  Sum_probs=64.8

Q ss_pred             CCCCEEEEECCccchHHHHHHHc--C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR--G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr--G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .++.+|||+||+-|+=..-.+..  + ...|+++|.++.-+ +.+++|++.+|+.+ +.+++.|...+....    ....
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~----~~~~  228 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRN-VIVVNKDARRLAELL----PGGE  228 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCc-eEEEecccccccccc----cccC
Confidence            46899999999999766554443  2 23479999999998 99999999999987 778888876554322    1123


Q ss_pred             CeeEEEEcCCCCC
Q 022298          231 PFDYMSVTPPYTA  243 (299)
Q Consensus       231 ~fDlI~iDPPY~~  243 (299)
                      +||.|++|+|...
T Consensus       229 ~fD~iLlDaPCSg  241 (355)
T COG0144         229 KFDRILLDAPCSG  241 (355)
T ss_pred             cCcEEEECCCCCC
Confidence            6999999999985

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.17  E-value=1.5e-05  Score=70.26  Aligned_cols=73  Identities=21%  Similarity=0.240  Sum_probs=57.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|.++..++..+.  .+++++|+++.++ +.+++|..   ..++++++.+|+.+..       ...++|
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-~~~~~~~~---~~~~i~~~~~d~~~~~-------~~~~~~  107 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-EVAKKKSE---LPLNIEFIQADAEALP-------FEDNSF  107 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-HHHHHHhc---cCCCceEEecchhcCC-------CCCCcE
Confidence            578999999999999988877665  3799999999998 88988876   2345788888887642       123579


Q ss_pred             eEEEEc
Q 022298          233 DYMSVT  238 (299)
Q Consensus       233 DlI~iD  238 (299)
                      |+|++.
T Consensus       108 D~i~~~  113 (223)
T TIGR01934       108 DAVTIA  113 (223)
T ss_pred             EEEEEe
Confidence            999863

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.16  E-value=5.7e-06  Score=74.70  Aligned_cols=74  Identities=16%  Similarity=0.013  Sum_probs=52.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh-----------CCCCcEEEEEcchhhHHHHHh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT-----------GFLDVSSIHTVRVETFLERAE  223 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~-----------g~~~~~~vi~~D~~~~l~~~~  223 (299)
                      .+.+|||+|||.|.-++.++.+|. .|++||+++.|+ +.+.......           .-..+++++++|++++...  
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--  109 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAV-EQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA--  109 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHH-HHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence            467999999999999999999998 499999999998 7643211000           0013478889998775311  


Q ss_pred             hhcCCCCCeeEEE
Q 022298          224 QFVGKDGPFDYMS  236 (299)
Q Consensus       224 ~~~~~~~~fDlI~  236 (299)
                          ..+.||.|+
T Consensus       110 ----~~~~fD~i~  118 (213)
T TIGR03840       110 ----DLGPVDAVY  118 (213)
T ss_pred             ----cCCCcCEEE
Confidence                124677766

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.14  E-value=2.1e-06  Score=76.64  Aligned_cols=70  Identities=29%  Similarity=0.417  Sum_probs=58.1

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      +.+++|||+|+|||-.+|.|+..||..|+..|++|... ..++-|++.||+.  +.+...|...          ....||
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~--i~~~~~d~~g----------~~~~~D  144 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVS--ILFTHADLIG----------SPPAFD  144 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccce--eEEeeccccC----------CCccee
Confidence            57999999999999999999999999999999999998 8999999999864  5566655332          245677


Q ss_pred             EEE
Q 022298          234 YMS  236 (299)
Q Consensus       234 lI~  236 (299)
                      +|+
T Consensus       145 l~L  147 (218)
T COG3897         145 LLL  147 (218)
T ss_pred             EEE
Confidence            765

>PRK06922 hypothetical protein; Provisional

Probab=98.13  E-value=1e-05  Score=83.77  Aligned_cols=80  Identities=9%  Similarity=0.020  Sum_probs=61.1

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.++..++.+ ...+|+++|+++.++ +.+++|....+.  ++.++++|+.++....     ..+.||
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML-e~Ararl~~~g~--~ie~I~gDa~dLp~~f-----edeSFD  489 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI-DTLKKKKQNEGR--SWNVIKGDAINLSSSF-----EKESVD  489 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC--CeEEEEcchHhCcccc-----CCCCEE
Confidence            5789999999999998766654 335799999999998 999998766543  4778889987632111     246899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|++++++.
T Consensus       490 vVVsn~vLH  498 (677)
T PRK06922        490 TIVYSSILH  498 (677)
T ss_pred             EEEEchHHH
Confidence            999998764

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.13  E-value=7.4e-06  Score=74.23  Aligned_cols=74  Identities=16%  Similarity=-0.032  Sum_probs=53.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHH-HHHHHh----------CCCCcEEEEEcchhhHHHHHh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWT----------GFLDVSSIHTVRVETFLERAE  223 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~-~N~~~~----------g~~~~~~vi~~D~~~~l~~~~  223 (299)
                      .+.+|||++||.|.-++.++.+|. +|++||+++.|+ +.+. +|-...          -...++++.++|++++...  
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai-~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~--  112 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAV-EQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA--  112 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHH-HHHHHHcCCCccccccccccccccCceEEEECcccCCCcc--
Confidence            467999999999999999999998 499999999998 6543 221000          0124578889998876321  


Q ss_pred             hhcCCCCCeeEEE
Q 022298          224 QFVGKDGPFDYMS  236 (299)
Q Consensus       224 ~~~~~~~~fDlI~  236 (299)
                          ....||.|+
T Consensus       113 ----~~~~fd~v~  121 (218)
T PRK13255        113 ----DLADVDAVY  121 (218)
T ss_pred             ----cCCCeeEEE
Confidence                125788887

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.13  E-value=1.9e-05  Score=70.18  Aligned_cols=73  Identities=18%  Similarity=0.180  Sum_probs=55.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.++..++..+. .+++++|+++.++ +.++++..     .++.++.+|+.+..       ...+.||
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-~~~~~~~~-----~~~~~~~~d~~~~~-------~~~~~fD  100 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-AQAKTKLS-----ENVQFICGDAEKLP-------LEDSSFD  100 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-HHHHHhcC-----CCCeEEecchhhCC-------CCCCcee
Confidence            357899999999999998887763 4589999999987 77776543     24678888877542       1246799


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|+++=.
T Consensus       101 ~vi~~~~  107 (240)
T TIGR02072       101 LIVSNLA  107 (240)
T ss_pred             EEEEhhh
Confidence            9998643

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK06202 hypothetical protein; Provisional

Probab=98.12  E-value=5.3e-06  Score=74.95  Aligned_cols=74  Identities=23%  Similarity=0.345  Sum_probs=52.0

Q ss_pred             CCCEEEEECCccchHHHHHHH----cCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS----RGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS----rGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      .+.+|||+|||+|.++..++.    .|. .+|+++|+++.++ +.++++....+    +++...++....       ...
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l-~~a~~~~~~~~----~~~~~~~~~~l~-------~~~  127 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV-AFARANPRRPG----VTFRQAVSDELV-------AEG  127 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHhccccCC----CeEEEEeccccc-------ccC
Confidence            467999999999999887653    242 3799999999998 89988765443    334444443321       124


Q ss_pred             CCeeEEEEcCC
Q 022298          230 GPFDYMSVTPP  240 (299)
Q Consensus       230 ~~fDlI~iDPP  240 (299)
                      ++||+|+++--
T Consensus       128 ~~fD~V~~~~~  138 (232)
T PRK06202        128 ERFDVVTSNHF  138 (232)
T ss_pred             CCccEEEECCe
Confidence            68999998743

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.11  E-value=5.7e-06  Score=75.64  Aligned_cols=46  Identities=24%  Similarity=0.188  Sum_probs=38.3

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL  199 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~  199 (299)
                      ..+.+|||+|||||.++..++.+|+.+|++||.++..+...+++|.
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~  119 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE  119 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC
Confidence            5688999999999999999999999999999999976623344443

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.11  E-value=1.1e-05  Score=75.33  Aligned_cols=79  Identities=22%  Similarity=0.169  Sum_probs=67.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .++..||++|-|||.+....+..|+ +|+++|+|+..+ .-+.+-.+....++..+++.+|+.+..         ...||
T Consensus        57 k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmv-ael~krv~gtp~~~kLqV~~gD~lK~d---------~P~fd  125 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMV-AELEKRVQGTPKSGKLQVLHGDFLKTD---------LPRFD  125 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHH-HHHHHHhcCCCccceeeEEecccccCC---------Ccccc
Confidence            3678999999999999999999887 599999999998 778777776666688999999976531         36899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      .++.|-||..
T Consensus       126 ~cVsNlPyqI  135 (315)
T KOG0820|consen  126 GCVSNLPYQI  135 (315)
T ss_pred             eeeccCCccc
Confidence            9999999985

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.09  E-value=1.1e-05  Score=72.37  Aligned_cols=75  Identities=12%  Similarity=0.010  Sum_probs=52.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-C-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-C-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l--~~~~~~~~~~~  230 (299)
                      .+.+|||+|||+|.++..++.+. . .+|++||+++. .           ...+ ++++++|+.+..  ..+.. ....+
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~-----------~~~~-v~~i~~D~~~~~~~~~i~~-~~~~~  116 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-D-----------PIVG-VDFLQGDFRDELVLKALLE-RVGDS  116 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-c-----------CCCC-cEEEecCCCChHHHHHHHH-HhCCC
Confidence            57799999999999999888763 2 47999999872 1           1223 678999987642  11100 01246


Q ss_pred             CeeEEEEcC-CCCC
Q 022298          231 PFDYMSVTP-PYTA  243 (299)
Q Consensus       231 ~fDlI~iDP-PY~~  243 (299)
                      .||+|++|+ |+..
T Consensus       117 ~~D~V~S~~~~~~~  130 (209)
T PRK11188        117 KVQVVMSDMAPNMS  130 (209)
T ss_pred             CCCEEecCCCCccC
Confidence            899999997 5443

>PHA01634 hypothetical protein

Probab=98.09  E-value=7.8e-06  Score=68.50  Aligned_cols=75  Identities=12%  Similarity=0.011  Sum_probs=60.1

Q ss_pred             CCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       153 ~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+.+|+|+||+.|.-+|..+.+||++|+++|.++... +..++|++.+.+-+.. +...   +|-.       .-+.|
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~-k~~een~k~nnI~DK~-v~~~---eW~~-------~Y~~~   93 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR-KKWEEVCAYFNICDKA-VMKG---EWNG-------EYEDV   93 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH-HHHHHHhhhheeeece-eecc---cccc-------cCCCc
Confidence            467999999999999999999999999999999999997 9999999998765543 2222   2211       13678


Q ss_pred             eEEEEcC
Q 022298          233 DYMSVTP  239 (299)
Q Consensus       233 DlI~iDP  239 (299)
                      |+..+|=
T Consensus        94 Di~~iDC  100 (156)
T PHA01634         94 DIFVMDC  100 (156)
T ss_pred             ceEEEEc
Confidence            9888874

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.07  E-value=2.3e-05  Score=76.75  Aligned_cols=70  Identities=19%  Similarity=0.129  Sum_probs=55.8

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||+|.+++.++.+ |+ +|+++|+++.++ +.++++++.  .  .+++...|..+.          .++||
T Consensus       167 ~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l-~~A~~~~~~--l--~v~~~~~D~~~l----------~~~fD  230 (383)
T PRK11705        167 PGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQ-KLAQERCAG--L--PVEIRLQDYRDL----------NGQFD  230 (383)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHhcc--C--eEEEEECchhhc----------CCCCC
Confidence            5789999999999999988875 55 799999999998 999998853  2  266777786542          26799


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      .|++..-
T Consensus       231 ~Ivs~~~  237 (383)
T PRK11705        231 RIVSVGM  237 (383)
T ss_pred             EEEEeCc
Confidence            9987543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.07  E-value=1.5e-05  Score=75.67  Aligned_cols=75  Identities=20%  Similarity=0.186  Sum_probs=50.7

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      +.|.+|||+|||.|..+.+++.+||+.|+++|-+...+ ...+.=.+..|....+..+-.-+++.       .. .+.||
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~-~QF~~i~~~lg~~~~~~~lplgvE~L-------p~-~~~FD  184 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY-LQFEAIKHFLGQDPPVFELPLGVEDL-------PN-LGAFD  184 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH-HHHHHHHHHhCCCccEEEcCcchhhc-------cc-cCCcC
Confidence            68999999999999999999999999999999988765 22222123334333232222223322       11 47899


Q ss_pred             EEEE
Q 022298          234 YMSV  237 (299)
Q Consensus       234 lI~i  237 (299)
                      +||+
T Consensus       185 tVF~  188 (315)
T PF08003_consen  185 TVFS  188 (315)
T ss_pred             EEEE
Confidence            9994

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PTZ00146 fibrillarin; Provisional

Probab=98.07  E-value=2.2e-05  Score=74.26  Aligned_cols=100  Identities=11%  Similarity=-0.105  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      ..|-.+++..++++-+....    ..++.+|||||||+|.+...++.. | ...|++||+++++. +.+.+-++..   .
T Consensus       110 w~p~rSKlaa~i~~g~~~l~----IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r---~  181 (293)
T PTZ00146        110 WNPFRSKLAAAIIGGVANIP----IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR---P  181 (293)
T ss_pred             eCCcccHHHHHHHCCcceec----cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc---C
Confidence            46777788888877665431    135789999999999999988765 2 34799999998865 4443332221   2


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      ++.++.+|+.......    ...+.||+||+|-.
T Consensus       182 NI~~I~~Da~~p~~y~----~~~~~vDvV~~Dva  211 (293)
T PTZ00146        182 NIVPIIEDARYPQKYR----MLVPMVDVIFADVA  211 (293)
T ss_pred             CCEEEECCccChhhhh----cccCCCCEEEEeCC
Confidence            3677888876432111    11257999999985

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.06  E-value=1.3e-05  Score=74.25  Aligned_cols=94  Identities=17%  Similarity=0.124  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~  213 (299)
                      ..+.+.+.+.+..       .++..|||+|+|+|.+.-+.+.++ .++++||+|+..+ +.+++...   ...+++++.+
T Consensus        16 ~~~~~~Iv~~~~~-------~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~-~~L~~~~~---~~~~~~vi~~   83 (262)
T PF00398_consen   16 PNIADKIVDALDL-------SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLA-KHLKERFA---SNPNVEVING   83 (262)
T ss_dssp             HHHHHHHHHHHTC-------GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHH-HHHHHHCT---TCSSEEEEES
T ss_pred             HHHHHHHHHhcCC-------CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHH-HHHHHHhh---hcccceeeec
Confidence            3466677676653       257899999999999999999888 6899999999987 88887654   3356999999


Q ss_pred             chhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       214 D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      |+.++.....    .......|+.|.||..
T Consensus        84 D~l~~~~~~~----~~~~~~~vv~NlPy~i  109 (262)
T PF00398_consen   84 DFLKWDLYDL----LKNQPLLVVGNLPYNI  109 (262)
T ss_dssp             -TTTSCGGGH----CSSSEEEEEEEETGTG
T ss_pred             chhccccHHh----hcCCceEEEEEecccc
Confidence            9987642110    0235679999999964

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.06  E-value=5.4e-06  Score=76.92  Aligned_cols=71  Identities=20%  Similarity=0.190  Sum_probs=53.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC-----cEEEEEcchhhHHHHHhhhcCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-----VSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~-----~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      .|.+|||+|||+|-++..++..|+ .|++||.+++++ +.+++-....-..+     ++++...|++..          .
T Consensus        89 ~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V-~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~  156 (282)
T KOG1270|consen   89 LGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMV-EVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------T  156 (282)
T ss_pred             CCceEEEeccCccccchhhHhhCC-eeEeecccHHHH-HHHHHhhhcCchhccccceeeehhhcchhhc----------c
Confidence            467899999999999998888887 599999999998 99988844332222     234455555543          3


Q ss_pred             CCeeEEEE
Q 022298          230 GPFDYMSV  237 (299)
Q Consensus       230 ~~fDlI~i  237 (299)
                      +.||.|++
T Consensus       157 ~~fDaVvc  164 (282)
T KOG1270|consen  157 GKFDAVVC  164 (282)
T ss_pred             cccceeee
Confidence            56999885

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.06  E-value=1.2e-05  Score=76.13  Aligned_cols=138  Identities=15%  Similarity=0.219  Sum_probs=64.7

Q ss_pred             cccccccceEEEEeeeeCCeEE-ecCCCCCCCCCHHHHH--HHHHHHHHhcCCCCCCCCCCEEEEECCccchH-HHHHHH
Q 022298          100 QEERTTHRLLQVLGGKARRKKL-LSPKGMDVRPMMEVVK--GAAFDILQSAGGCPASLRPGRWLDLYSGTGSV-GIEAIS  175 (299)
Q Consensus       100 ~~p~~~~~~mrIi~Gk~~Gr~L-~~p~~~~~RPttd~Vr--ealfn~L~~~~~~~~~~~~~~VLDLfaGSGal-gIEAlS  175 (299)
                      .+|...+.+-+.+--...|..+ .+|++.-.-|-+.|+-  ..+.+.|.....  ......++||+|+|.-++ .|-+.+
T Consensus        46 ~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~--~~~~~v~glDIGTGAscIYpLLg~~  123 (299)
T PF05971_consen   46 SDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNP--GIPEKVRGLDIGTGASCIYPLLGAK  123 (299)
T ss_dssp             TSHHHHHHHHHHHHHHHH--------TTS----HHHHHHHHHHHHHHHT--TC--GCS---EEEEES-TTTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchhHHHHHHHHHHhhcccc--ccccceEeecCCccHHHHHHHHhhh
Confidence            4455444333333334456666 7888765334443422  233344432210  001256899998887754 443333


Q ss_pred             -cCCCEEEEEeCCHHHHHHHHHHHHHHh-CCCCcEEEEEcchh-hHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          176 -RGCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVE-TFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       176 -rGa~~V~~VD~n~~Al~~~a~~N~~~~-g~~~~~~vi~~D~~-~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                       .|. +.++.|+|+.++ +.+++|++.| +++++++++...-. ..+..   +....+.||+.++||||-..
T Consensus       124 ~~~W-~fvaTdID~~sl-~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~---i~~~~e~~dftmCNPPFy~s  190 (299)
T PF05971_consen  124 LYGW-SFVATDIDPKSL-ESARENVERNPNLESRIELRKQKNPDNIFDG---IIQPNERFDFTMCNPPFYSS  190 (299)
T ss_dssp             HH---EEEEEES-HHHH-HHHHHHHHHT-T-TTTEEEEE--ST-SSTTT---STT--S-EEEEEE-----SS
T ss_pred             hcCC-eEEEecCCHHHH-HHHHHHHHhccccccceEEEEcCCccccchh---hhcccceeeEEecCCccccC
Confidence             465 699999999998 9999999999 99999988765322 11111   12234689999999998763

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR03438 probable methyltransferase

Probab=98.05  E-value=3.6e-05  Score=72.77  Aligned_cols=104  Identities=9%  Similarity=-0.120  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      +|-..+.+.+..-.+....      ..+.+|||||||||.....++.++  ..+++++|+|+.++ +.+++++....-.-
T Consensus        43 tr~E~~il~~~~~~ia~~~------~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL-~~a~~~l~~~~p~~  115 (301)
T TIGR03438        43 TRTEAAILERHADEIAAAT------GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL-KESAAALAADYPQL  115 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhh------CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH-HHHHHHHHhhCCCc
Confidence            4444454554444444331      246799999999999999888764  24799999999998 89998876532112


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                      ++..+++|+.+.+......  ......+++++-..
T Consensus       116 ~v~~i~gD~~~~~~~~~~~--~~~~~~~~~~gs~~  148 (301)
T TIGR03438       116 EVHGICADFTQPLALPPEP--AAGRRLGFFPGSTI  148 (301)
T ss_pred             eEEEEEEcccchhhhhccc--ccCCeEEEEecccc
Confidence            3667889987654322100  01134566666543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.04  E-value=1.2e-05  Score=80.09  Aligned_cols=78  Identities=15%  Similarity=0.051  Sum_probs=57.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.++ .+|++||.++.++ +.+++   ..+...+++++++|+.....     ....++||+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l-~~a~~---~~~~~~~i~~~~~d~~~~~~-----~~~~~~fD~  106 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVI-KKNES---INGHYKNVKFMCADVTSPDL-----NISDGSVDL  106 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHH-HHHHH---HhccCCceEEEEeccccccc-----CCCCCCEEE
Confidence            46799999999999999877775 4799999999987 55433   33333457889999854210     112468999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |+++.+..
T Consensus       107 I~~~~~l~  114 (475)
T PLN02336        107 IFSNWLLM  114 (475)
T ss_pred             EehhhhHH
Confidence            99998754

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.02  E-value=8.1e-06  Score=72.33  Aligned_cols=61  Identities=20%  Similarity=0.233  Sum_probs=53.7

Q ss_pred             CEEEEECCccchHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 022298          157 GRWLDLYSGTGSVGIEAISRGCSE-VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSrGa~~-V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~  218 (299)
                      .+|||||||-|.+-..+++.|-.. .++||.++.|+ ++++.-+++.+++|.+++.+.|+.+.
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~DI~~~  130 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQLDITDP  130 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEeeccCC
Confidence            499999999999999999988654 99999999999 88877778889988899999998763

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=6.9e-05  Score=70.03  Aligned_cols=120  Identities=19%  Similarity=0.076  Sum_probs=85.7

Q ss_pred             eeeeCCeEEecCCCCC---CCCCHHHHHHHHH-----------HHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-
Q 022298          113 GGKARRKKLLSPKGMD---VRPMMEVVKGAAF-----------DILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-  177 (299)
Q Consensus       113 ~Gk~~Gr~L~~p~~~~---~RPttd~Vrealf-----------n~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-  177 (299)
                      -|+..|.++.+.+|..   .|||.+.+..++=           +.+....+   ..+|.+|++-|.|||+++.. ++|- 
T Consensus        52 IGK~~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L~---i~PGsvV~EsGTGSGSlSha-iaraV  127 (314)
T KOG2915|consen   52 IGKPYGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSMLE---IRPGSVVLESGTGSGSLSHA-IARAV  127 (314)
T ss_pred             ecCCccceeeecCCcEEEEecCChHHhhhhccCcceEEecccHHHHHHHhc---CCCCCEEEecCCCcchHHHH-HHHhh
Confidence            4888899999877743   6999987554431           11111111   14689999999999999984 4542 


Q ss_pred             --CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          178 --CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       178 --a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                        -.+++-.|....-. +-+++-.+..++.+.+++..-|+-..--     ..+...+|.||+|-|--
T Consensus       128 ~ptGhl~tfefH~~Ra-~ka~eeFr~hgi~~~vt~~hrDVc~~GF-----~~ks~~aDaVFLDlPaP  188 (314)
T KOG2915|consen  128 APTGHLYTFEFHETRA-EKALEEFREHGIGDNVTVTHRDVCGSGF-----LIKSLKADAVFLDLPAP  188 (314)
T ss_pred             CcCcceEEEEecHHHH-HHHHHHHHHhCCCcceEEEEeecccCCc-----cccccccceEEEcCCCh
Confidence              25799999988776 7788888888998889998888754211     11246899999999854

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.91  E-value=8.9e-05  Score=68.23  Aligned_cols=93  Identities=22%  Similarity=0.289  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHH-HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE-AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIE-AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D  214 (299)
                      ++++++  +..++    ++.|+++|=+|=+= .++|. |++....+|+.+|+|.+.+ +.+++.++..|+.  ++.+..|
T Consensus        31 ~~Ra~~--~~~~g----dL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~--i~~~~~D  100 (243)
T PF01861_consen   31 LRRAAL--MAERG----DLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLP--IEAVHYD  100 (243)
T ss_dssp             HHHHHH--HHHTT-----STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT----EEEE---
T ss_pred             HHHHHH--HHhcC----cccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCc--eEEEEec
Confidence            666664  33333    36899999876443 33443 3556667899999999998 9999999999985  8899999


Q ss_pred             hhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          215 VETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       215 ~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +...+...     ..++||++|.||||..
T Consensus       101 lR~~LP~~-----~~~~fD~f~TDPPyT~  124 (243)
T PF01861_consen  101 LRDPLPEE-----LRGKFDVFFTDPPYTP  124 (243)
T ss_dssp             TTS---TT-----TSS-BSEEEE---SSH
T ss_pred             ccccCCHH-----HhcCCCEEEeCCCCCH
Confidence            98877532     2479999999999984

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.90  E-value=4.8e-05  Score=70.17  Aligned_cols=80  Identities=21%  Similarity=0.202  Sum_probs=63.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCC---CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~---~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      +..+||=+|.|.|+..-|++... ..+|++||+|+..+ +.+++-+.....   ..+++++.+|+..+++..      .+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv-~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------~~  148 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVV-ELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------QE  148 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHH-HHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------SS
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHH-HHHHHhchhhccccCCCceEEEEhhhHHHHHhc------cC
Confidence            57899999999999999887754 57899999999998 999987665432   357999999999999754      34


Q ss_pred             -CeeEEEEcCCC
Q 022298          231 -PFDYMSVTPPY  241 (299)
Q Consensus       231 -~fDlI~iDPPY  241 (299)
                       +||+|++|.+-
T Consensus       149 ~~yDvIi~D~~d  160 (246)
T PF01564_consen  149 EKYDVIIVDLTD  160 (246)
T ss_dssp             T-EEEEEEESSS
T ss_pred             CcccEEEEeCCC
Confidence             89999999865

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.89  E-value=2.7e-05  Score=69.65  Aligned_cols=71  Identities=20%  Similarity=0.276  Sum_probs=52.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .-.++||+|||.|.+...++.| +.+++++|+++.|+ +.+++.+...   .++++++.|+..+.        +.++||+
T Consensus        43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~~---~~V~~~~~dvp~~~--------P~~~FDL  109 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAGL---PHVEWIQADVPEFW--------PEGRFDL  109 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT----SSEEEEES-TTT-----------SS-EEE
T ss_pred             ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCCC---CCeEEEECcCCCCC--------CCCCeeE
Confidence            3568999999999999887777 46899999999998 8988877543   35899999998764        2579999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++=
T Consensus       110 IV~S  113 (201)
T PF05401_consen  110 IVLS  113 (201)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9863

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.87  E-value=0.00012  Score=61.00  Aligned_cols=39  Identities=33%  Similarity=0.371  Sum_probs=34.7

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV  194 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~  194 (299)
                      ..+.+|||+|||+|.+...+...|. +++++|+++.++ +.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~-~~   59 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMI-EK   59 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHH-HH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHH-hh
Confidence            3688999999999999998888888 799999999987 55

...

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.85  E-value=1.5e-06  Score=67.77  Aligned_cols=72  Identities=17%  Similarity=0.154  Sum_probs=43.9

Q ss_pred             EEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          160 LDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       160 LDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      ||+|||+|.+...++.. ...+++++|+|+.++ +.+++.+...+..+ ...+..+..+....     ...++||+|++-
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l-~~a~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML-ERARERLAELGNDN-FERLRFDVLDLFDY-----DPPESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT-STTCCCHHHCT----EEEEE--SSS---C-----CC----SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCCcc-eeEEEeecCChhhc-----ccccccceehhh
Confidence            79999999999988876 334799999999998 88999888877543 33444443333211     012489999974

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.85  E-value=0.00012  Score=68.05  Aligned_cols=69  Identities=9%  Similarity=0.042  Sum_probs=49.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG----a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ...+|||+|||+|.++..++...    ...++++|+++.++ +.++++.      ..+.+..+|+.+..       -..+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-~~A~~~~------~~~~~~~~d~~~lp-------~~~~  150 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-KYAAKRY------PQVTFCVASSHRLP-------FADQ  150 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-HHHHHhC------CCCeEEEeecccCC-------CcCC
Confidence            35789999999999988765431    23699999999998 8887652      22567778866531       1246


Q ss_pred             CeeEEEE
Q 022298          231 PFDYMSV  237 (299)
Q Consensus       231 ~fDlI~i  237 (299)
                      .||+|+.
T Consensus       151 sfD~I~~  157 (272)
T PRK11088        151 SLDAIIR  157 (272)
T ss_pred             ceeEEEE
Confidence            7999885

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.84  E-value=5.1e-05  Score=66.42  Aligned_cols=72  Identities=15%  Similarity=0.078  Sum_probs=48.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHhhhcCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGKD  229 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l--~~~~~~~~~~  229 (299)
                      ..+.+|||+|||+|.++..++.+  +..+|+++|+|+..            ... .++++++|+.+..  ...... ...
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------------~~~-~i~~~~~d~~~~~~~~~l~~~-~~~   96 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------------PIE-NVDFIRGDFTDEEVLNKIRER-VGD   96 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------------cCC-CceEEEeeCCChhHHHHHHHH-hCC
Confidence            35789999999999999877665  34579999999842            112 2567777875431  111000 124


Q ss_pred             CCeeEEEEcC
Q 022298          230 GPFDYMSVTP  239 (299)
Q Consensus       230 ~~fDlI~iDP  239 (299)
                      +.||+|++|+
T Consensus        97 ~~~D~V~~~~  106 (188)
T TIGR00438        97 DKVDVVMSDA  106 (188)
T ss_pred             CCccEEEcCC
Confidence            5799999995

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.81  E-value=7.2e-05  Score=61.93  Aligned_cols=57  Identities=16%  Similarity=0.172  Sum_probs=49.1

Q ss_pred             EEEEECCccchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022298          158 RWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (299)
Q Consensus       158 ~VLDLfaGSGalgIEAlSrGa~-~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~  216 (299)
                      .+||+|||.|.+++.++.++.. +|+++|.++.++ +.+++|++.+++.+ +++++..+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-~~l~~~~~~n~~~~-v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-EILEENVKLNNLPN-VVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-HHHHHHHHHcCCCc-EEEEEeeee
Confidence            4899999999999998887654 899999999998 99999999998865 778776654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.77  E-value=0.00011  Score=66.15  Aligned_cols=61  Identities=16%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             EEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 022298          159 WLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (299)
Q Consensus       159 VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~  220 (299)
                      |.|+||--|.+++.++.+| +.+|+++|+++..+ +.+++|++..++.++++++.+|.++.+.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~i~~rlgdGL~~l~   62 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDRIEVRLGDGLEVLK   62 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTTEEEEE-SGGGG--
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCcccEEEEECCcccccC
Confidence            6899999999999999998 45799999999998 9999999999999999999999877653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=97.76  E-value=0.00018  Score=66.86  Aligned_cols=76  Identities=17%  Similarity=0.222  Sum_probs=58.6

Q ss_pred             CCCCEEEEECCccchHHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHHHHHhCCCCc--EEEEEcchhhHHHHHhh
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR-GC------SEVHFVEMDPWVVSNVLIPNLEWTGFLDV--SSIHTVRVETFLERAEQ  224 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr-Ga------~~V~~VD~n~~Al~~~a~~N~~~~g~~~~--~~vi~~D~~~~l~~~~~  224 (299)
                      ..+.++||++||||-+++-.+.. +.      .+|+.+|+|+..+ +..++-.+..++...  +.++.+|+++.-     
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL-~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-----  172 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML-AVGKQRAKKRPLKASSRVEWVEGDAEDLP-----  172 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH-HHHHHHHhhcCCCcCCceEEEeCCcccCC-----
Confidence            35789999999999998877642 33      6899999999998 888888877777644  788999998742     


Q ss_pred             hcCCCCCeeEEEE
Q 022298          225 FVGKDGPFDYMSV  237 (299)
Q Consensus       225 ~~~~~~~fDlI~i  237 (299)
                        -....||...+
T Consensus       173 --Fdd~s~D~yTi  183 (296)
T KOG1540|consen  173 --FDDDSFDAYTI  183 (296)
T ss_pred             --CCCCcceeEEE
Confidence              23567787554

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.76  E-value=0.00018  Score=63.00  Aligned_cols=99  Identities=18%  Similarity=0.134  Sum_probs=76.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      .-||++...+.+.+.+...       .+.-||++|.|||.+.-..|++|.  +.++++|.|++-+ ..+.+-   +  . 
T Consensus        29 I~PsSs~lA~~M~s~I~pe-------sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~-~~L~~~---~--p-   94 (194)
T COG3963          29 ILPSSSILARKMASVIDPE-------SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV-CHLNQL---Y--P-   94 (194)
T ss_pred             ecCCcHHHHHHHHhccCcc-------cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH-HHHHHh---C--C-
Confidence            6899999999998887652       467999999999999999999985  4699999999987 444332   2  2 


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ...++++|+++.-....  ..+++.||.|++.-|...
T Consensus        95 ~~~ii~gda~~l~~~l~--e~~gq~~D~viS~lPll~  129 (194)
T COG3963          95 GVNIINGDAFDLRTTLG--EHKGQFFDSVISGLPLLN  129 (194)
T ss_pred             CccccccchhhHHHHHh--hcCCCeeeeEEecccccc
Confidence            25689999987653332  124578999999999865

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=97.76  E-value=6.1e-06  Score=77.82  Aligned_cols=76  Identities=22%  Similarity=0.274  Sum_probs=60.7

Q ss_pred             CCCCEEEEECCccchHHH-HHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          154 LRPGRWLDLYSGTGSVGI-EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgI-EAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ..+..++|||||.|.+.+ ..++.||+.|+++|.||.++ +.+++|++.|+..+++.++.+|-...        +.....
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-EaLrR~~~~N~V~~r~~i~~gd~R~~--------~~~~~A  263 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-EALRRNAEANNVMDRCRITEGDNRNP--------KPRLRA  263 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-HHHHHHHHhcchHHHHHhhhcccccc--------Cccccc
Confidence            356889999999999999 56788999999999999999 99999999998877777777764321        223456


Q ss_pred             eEEEEc
Q 022298          233 DYMSVT  238 (299)
Q Consensus       233 DlI~iD  238 (299)
                      |-|.+-
T Consensus       264 drVnLG  269 (351)
T KOG1227|consen  264 DRVNLG  269 (351)
T ss_pred             hheeec
Confidence            666643

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=97.74  E-value=8.1e-05  Score=69.27  Aligned_cols=72  Identities=21%  Similarity=0.317  Sum_probs=54.5

Q ss_pred             EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      +++|||||.|.+.+-+-..|...|.++|+|+.|+ +..+.|..        .+..+|+.++....  +.  . .+|+++.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-~~y~~N~~--------~~~~~Di~~~~~~~--l~--~-~~D~l~g   67 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-ETYKANFP--------EVICGDITEIDPSD--LP--K-DVDLLIG   67 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-HHHHHHHT--------EEEESHGGGCHHHH--HH--H-T-SEEEE
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-Hhhhhccc--------cccccccccccccc--cc--c-cceEEEe
Confidence            6999999999999877778888899999999997 99999974        46788988775432  11  1 5999999


Q ss_pred             cCCCCC
Q 022298          238 TPPYTA  243 (299)
Q Consensus       238 DPPY~~  243 (299)
                      -||...
T Consensus        68 gpPCQ~   73 (335)
T PF00145_consen   68 GPPCQG   73 (335)
T ss_dssp             E---TT
T ss_pred             ccCCce
Confidence            999864

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.70  E-value=0.00011  Score=64.49  Aligned_cols=55  Identities=15%  Similarity=0.108  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (299)
Q Consensus       133 td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~  197 (299)
                      ...+.+-++.....        ++..|||.|||||+.+++|...|- +.+++|+++..+ +++++
T Consensus       177 P~~l~~~lI~~~t~--------~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~-~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKASTN--------PGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYC-EIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHHS---------TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHH-HHHHH
T ss_pred             CHHHHHHHHHhhhc--------cceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHH-HHhcC
Confidence            34555666555543        588999999999999999988875 699999999997 88764

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.67  E-value=0.00043  Score=61.72  Aligned_cols=77  Identities=18%  Similarity=0.141  Sum_probs=59.7

Q ss_pred             CCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ...+||+|||.|.+.++.+.+ .-..+++||+....+ ..+.+.+...++.| +.++++|+..++....    ..+.+|-
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v-~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~----~~~~v~~   91 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRV-AKALRKAEKRGLKN-VRFLRGDARELLRRLF----PPGSVDR   91 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHH-HHHHHHHHHHTTSS-EEEEES-CTTHHHHHS----TTTSEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHH-HHHHHHHHhhcccc-eEEEEccHHHHHhhcc----cCCchhe
Confidence            348999999999999987654 455799999999998 88889999889866 8999999999886542    2467887


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |+++
T Consensus        92 i~i~   95 (195)
T PF02390_consen   92 IYIN   95 (195)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7754

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.60  E-value=6.8e-05  Score=68.83  Aligned_cols=79  Identities=22%  Similarity=0.303  Sum_probs=51.0

Q ss_pred             CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC--------CCcEEEEEcchhhHHHHHhhhcCC
Q 022298          157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------LDVSSIHTVRVETFLERAEQFVGK  228 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~--------~~~~~vi~~D~~~~l~~~~~~~~~  228 (299)
                      .+|||.=||-|.=++-+++.|+ +|+++|.||-.. .+++.-++...-        ..+++++++|..+++..      .
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia-~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~------~  148 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIA-ALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ------P  148 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHH-HHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC------H
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHH-HHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh------c
Confidence            4899999999999998888898 599999999876 777765554311        13689999999998752      2


Q ss_pred             CCCeeEEEEcCCCCC
Q 022298          229 DGPFDYMSVTPPYTA  243 (299)
Q Consensus       229 ~~~fDlI~iDPPY~~  243 (299)
                      ...||+|++||-|..
T Consensus       149 ~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  149 DNSFDVVYFDPMFPE  163 (234)
T ss_dssp             SS--SEEEE--S---
T ss_pred             CCCCCEEEECCCCCC
Confidence            478999999999975

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.58  E-value=0.0011  Score=60.53  Aligned_cols=83  Identities=19%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             CCCCEEEEECCccchHHHHH---HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEA---ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEA---lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ...+++||+|.-||.-++..   ++.+. +|+++|+|+.+. ++..+=.+..|...+++++++++.+.+.++.+ ....+
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dG-rv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~-~~~~~  148 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDG-RVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELLA-DGESG  148 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCc-eEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHHh-cCCCC
Confidence            35789999999999655542   23444 699999999998 99998888899998999999999988876531 12356


Q ss_pred             CeeEEEEcC
Q 022298          231 PFDYMSVTP  239 (299)
Q Consensus       231 ~fDlI~iDP  239 (299)
                      .||++|+|-
T Consensus       149 tfDfaFvDa  157 (237)
T KOG1663|consen  149 TFDFAFVDA  157 (237)
T ss_pred             ceeEEEEcc
Confidence            899999997

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.57  E-value=0.00043  Score=62.40  Aligned_cols=78  Identities=21%  Similarity=0.130  Sum_probs=48.2

Q ss_pred             CCCEEEEECCccchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHHh-------CCC-CcEEEEEcchhhHH--HHHh
Q 022298          155 RPGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWT-------GFL-DVSSIHTVRVETFL--ERAE  223 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEA-lSrGa~~V~~VD~n~~Al~~~a~~N~~~~-------g~~-~~~~vi~~D~~~~l--~~~~  223 (299)
                      ++..++|||||.|.+-+.| +..++.++++||+.+... +.++.+.+.+       |.. ..+++.++|+.+..  ... 
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~-~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~-  119 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELH-DLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI-  119 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHH-HHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH-
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHH-HHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh-
Confidence            5789999999999887764 456898999999999986 7777655432       332 35778888876432  211 


Q ss_pred             hhcCCCCCeeEEEEcC
Q 022298          224 QFVGKDGPFDYMSVTP  239 (299)
Q Consensus       224 ~~~~~~~~fDlI~iDP  239 (299)
                           -...|+||+|=
T Consensus       120 -----~s~AdvVf~Nn  130 (205)
T PF08123_consen  120 -----WSDADVVFVNN  130 (205)
T ss_dssp             -----GHC-SEEEE--
T ss_pred             -----hcCCCEEEEec
Confidence                 13568999864

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.54  E-value=0.00013  Score=67.94  Aligned_cols=73  Identities=11%  Similarity=0.052  Sum_probs=45.8

Q ss_pred             cCCCCCCCCC--HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccch----HHHHHHHcC------CCEEEEEeCCHHH
Q 022298          123 SPKGMDVRPM--MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS----VGIEAISRG------CSEVHFVEMDPWV  190 (299)
Q Consensus       123 ~p~~~~~RPt--td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGa----lgIEAlSrG------a~~V~~VD~n~~A  190 (299)
                      ++...+.|-.  .+.+++.+...+.....   ...+.+|||+|||||-    +++.++..+      ..+|+++|+|+.+
T Consensus        68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~---~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~  144 (264)
T smart00138       68 TNETRFFRESKHFEALEEKVLPLLIASRR---HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKA  144 (264)
T ss_pred             cCCCcccCCcHHHHHHHHHHhHHHHHhcC---CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHH
Confidence            3455555522  34455555544422110   0135799999999994    666554432      2379999999999


Q ss_pred             HHHHHHHHH
Q 022298          191 VSNVLIPNL  199 (299)
Q Consensus       191 l~~~a~~N~  199 (299)
                      + +.+++++
T Consensus       145 L-~~Ar~~~  152 (264)
T smart00138      145 L-EKARAGI  152 (264)
T ss_pred             H-HHHHcCC
Confidence            8 9999864

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=97.54  E-value=5.1e-05  Score=74.61  Aligned_cols=64  Identities=20%  Similarity=0.369  Sum_probs=59.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc-EEEEEcchhhHHH
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLE  220 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~-~~vi~~D~~~~l~  220 (299)
                      .|..|-|+|||.|-+++.|+..|+ +|++-|.|++++ ++++.|+..+.+... +++++.|+.+|++
T Consensus       249 ~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesi-k~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  249 PGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESI-KWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             CcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHH-HHHHHhccccccchhheeeecccHHHHhh
Confidence            578999999999999999999886 699999999998 999999999998765 8999999999985

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.54  E-value=0.0004  Score=65.50  Aligned_cols=75  Identities=23%  Similarity=0.211  Sum_probs=63.0

Q ss_pred             CEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g--~-~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+||=+|.|-|++.-|++... ..++++||+|+..+ +++++=+....  . +.+++++..|..++++..      ..+|
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~~~f  150 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------EEKF  150 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-HHHHHhccCcccccCCCceEEEeccHHHHHHhC------CCcC
Confidence            699999999999999999865 67899999999998 99988665432  2 368899999999999764      2489


Q ss_pred             eEEEEc
Q 022298          233 DYMSVT  238 (299)
Q Consensus       233 DlI~iD  238 (299)
                      |+|++|
T Consensus       151 DvIi~D  156 (282)
T COG0421         151 DVIIVD  156 (282)
T ss_pred             CEEEEc
Confidence            999976

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=6.1e-05  Score=75.23  Aligned_cols=85  Identities=20%  Similarity=0.263  Sum_probs=71.3

Q ss_pred             CCCEEEEECCccchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS--rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.++||..|+||..+|-.+.  -|+.+|++-|.|+.++ +.+++|++.|+.++.++..+.|+...+-..   ......|
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV-~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~---~~~~~~F  184 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAV-TSIQRNVELNGVEDIVEPHHSDANVLMYEH---PMVAKFF  184 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHH-HHHHhhhhhcCchhhcccccchHHHHHHhc---ccccccc
Confidence            467899999999999998765  3778899999999999 999999999999888888999988776332   1224689


Q ss_pred             eEEEEcCCCCCC
Q 022298          233 DYMSVTPPYTAV  244 (299)
Q Consensus       233 DlI~iDPPY~~~  244 (299)
                      |+|-+|| |+..
T Consensus       185 DvIDLDP-yGs~  195 (525)
T KOG1253|consen  185 DVIDLDP-YGSP  195 (525)
T ss_pred             ceEecCC-CCCc
Confidence            9999998 9863

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.49  E-value=0.00015  Score=65.78  Aligned_cols=74  Identities=19%  Similarity=0.087  Sum_probs=53.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHHhC---C-------CCcEEEEEcchhhHHHHHh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL-IPNLEWTG---F-------LDVSSIHTVRVETFLERAE  223 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a-~~N~~~~g---~-------~~~~~vi~~D~~~~l~~~~  223 (299)
                      .+.+||+++||.|.-.+.++.+|. +|+++|+++.|+ +.+ ++|.....   .       .++++++++|++++-..  
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai-~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~--  112 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAI-EQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE--  112 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHH-HHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS--
T ss_pred             CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHH-HHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh--
Confidence            467999999999999999999997 699999999998 776 33332110   0       23578999999886421  


Q ss_pred             hhcCCCCCeeEEE
Q 022298          224 QFVGKDGPFDYMS  236 (299)
Q Consensus       224 ~~~~~~~~fDlI~  236 (299)
                          ..++||+|+
T Consensus       113 ----~~g~fD~iy  121 (218)
T PF05724_consen  113 ----DVGKFDLIY  121 (218)
T ss_dssp             ----CHHSEEEEE
T ss_pred             ----hcCCceEEE
Confidence                125799988

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.47  E-value=0.0023  Score=56.71  Aligned_cols=93  Identities=24%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 022298          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (299)
Q Consensus       133 td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEA-lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi  211 (299)
                      .+.+.+.+++.|....-+  ...+.+++|+|+|-|-=||-. +.+...+++.+|.+.+-+ ..++.=++.++++| ++++
T Consensus        28 ~~~~~~Hi~DSL~~~~~~--~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~n-v~v~  103 (184)
T PF02527_consen   28 EEIWERHILDSLALLPFL--PDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLSN-VEVI  103 (184)
T ss_dssp             HHHHHHHHHHHHGGGGCS---CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-SS-EEEE
T ss_pred             HHHHHHHHHHHHHhhhhh--ccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCCC-EEEE
Confidence            355667888887653211  112338999999999888874 346666899999999997 99999999999975 9999


Q ss_pred             EcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          212 TVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       212 ~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      ++++++.        ....+||+|++
T Consensus       104 ~~R~E~~--------~~~~~fd~v~a  121 (184)
T PF02527_consen  104 NGRAEEP--------EYRESFDVVTA  121 (184)
T ss_dssp             ES-HHHT--------TTTT-EEEEEE
T ss_pred             Eeeeccc--------ccCCCccEEEe
Confidence            9999881        12478999996

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.46  E-value=0.00028  Score=64.55  Aligned_cols=75  Identities=17%  Similarity=0.045  Sum_probs=54.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-H-H----H------HhCCCCcEEEEEcchhhHHHHH
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP-N-L----E------WTGFLDVSSIHTVRVETFLERA  222 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~-N-~----~------~~g~~~~~~vi~~D~~~~l~~~  222 (299)
                      .+.+||+++||.|--.+.++++|.. |++||+++.|+ +.+.+ | +    .      ... ...++++++|++++-...
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai-~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAV-LSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHH-HHHHHHcCCCcceecccccceec-cCceEEEEccCcCCCccc
Confidence            4689999999999999999999985 99999999998 66544 2 0    0      011 135789999998763100


Q ss_pred             hhhcCCCCCeeEEE
Q 022298          223 EQFVGKDGPFDYMS  236 (299)
Q Consensus       223 ~~~~~~~~~fDlI~  236 (299)
                          ...++||+|+
T Consensus       120 ----~~~~~fD~Vy  129 (226)
T PRK13256        120 ----NNLPVFDIWY  129 (226)
T ss_pred             ----cccCCcCeee
Confidence                1125788876

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.46  E-value=0.00033  Score=70.73  Aligned_cols=104  Identities=15%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc---C--CCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---G--CSEVHFVEMDPWVVSNVLIPNLEWTGF  204 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr---G--a~~V~~VD~n~~Al~~~a~~N~~~~g~  204 (299)
                      --|+..|.+.+..++...       ...+|+|.+||||++-+.+...   .  -...++.|+++... ++++.|+-..|+
T Consensus       168 fyTP~~v~~liv~~l~~~-------~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lhgi  239 (489)
T COG0286         168 FYTPREVSELIVELLDPE-------PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILHGI  239 (489)
T ss_pred             cCChHHHHHHHHHHcCCC-------CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHhCC
Confidence            445555666666666541       3459999999999998887642   1  13589999999998 999999998888


Q ss_pred             CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       205 ~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .....+..+|...-.....  .....+||+|+.||||..
T Consensus       240 ~~~~~i~~~dtl~~~~~~~--~~~~~~~D~viaNPPf~~  276 (489)
T COG0286         240 EGDANIRHGDTLSNPKHDD--KDDKGKFDFVIANPPFSG  276 (489)
T ss_pred             CccccccccccccCCcccc--cCCccceeEEEeCCCCCc
Confidence            6324455555432111000  012367999999999983

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.37  E-value=0.0047  Score=56.26  Aligned_cols=153  Identities=15%  Similarity=0.091  Sum_probs=78.5

Q ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHH-H-HHHc-CCCEEEEEeCCHHHHHHH
Q 022298          118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGI-E-AISR-GCSEVHFVEMDPWVVSNV  194 (299)
Q Consensus       118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgI-E-AlSr-Ga~~V~~VD~n~~Al~~~  194 (299)
                      |+-|...+|.-.-|  -|+.--+|...-....   .-....+.|.|||+|.+-- - ++.+ -...|++-|+|++++ ++
T Consensus        19 G~VL~sApG~p~FP--VRLAsEi~qR~l~~l~---~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL-~l   92 (246)
T PF11599_consen   19 GRVLYSAPGFPAFP--VRLASEIFQRALHYLE---GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDAL-EL   92 (246)
T ss_dssp             TTSS--BTTB------HHHHHHHHHHHHCTSS---S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHH-HH
T ss_pred             CeEEecCCCCCCcc--HHHHHHHHHHHHHhhc---CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHH-HH
Confidence            55555555432222  2455555555422210   1245689999999996542 2 2332 345799999999998 99


Q ss_pred             HHHHHHHhCC-----------------------------------------CCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          195 LIPNLEWTGF-----------------------------------------LDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       195 a~~N~~~~g~-----------------------------------------~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      +++|+..+..                                         ..-..+.+.|++++-.... + ......|
T Consensus        93 A~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~-~-~~~~~~d  170 (246)
T PF11599_consen   93 ARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAV-L-DAGFTPD  170 (246)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHH-H-HTT---S
T ss_pred             HHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhh-h-ccCCCCC
Confidence            9999865411                                         1124567777777543221 1 1133469


Q ss_pred             EEEEcCCCCCC--Ce------------------------EEEEecCCCCCCCCCCCeEEEEEeeecceEEEEee
Q 022298          234 YMSVTPPYTAV--DY------------------------EVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG  281 (299)
Q Consensus       234 lI~iDPPY~~~--~~------------------------~~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~  281 (299)
                      +|+.|-||+..  +.                        ..+ ..+...++  .+.+.-++.-+.|+-.+.||+
T Consensus       171 iViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v-~~k~~Ki~--~~~~r~~~rlKvGkR~~~l~r  241 (246)
T PF11599_consen  171 IVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAV-SDKGRKIP--HDRFRRLERLKVGKRQAALFR  241 (246)
T ss_dssp             EEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEE-EESSSS-----TTS--SEEEEETTEEEEEEE
T ss_pred             EEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEE-ecCCcccc--cchhHHHHHHhccceEEEEEe
Confidence            99999999852  11                        114 44444444  245666777788999999985

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.35  E-value=0.00042  Score=66.39  Aligned_cols=76  Identities=21%  Similarity=0.259  Sum_probs=59.3

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC-CeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG-PFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~-~fDl  234 (299)
                      .-+++|||||.|.+.+-+-..|.+-+.++|+|+.|+ +..+.|...      ..++..|+..+.....     .. .+|+
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~-~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~Dv   70 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAV-ATYKANFPH------GDIILGDIKELDGEAL-----RKSDVDV   70 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHH-HHHHHhCCC------CceeechHhhcChhhc-----cccCCCE
Confidence            358999999999999877777888899999999998 888888653      2356677776653321     12 7999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      ++.-||...
T Consensus        71 ligGpPCQ~   79 (328)
T COG0270          71 LIGGPPCQD   79 (328)
T ss_pred             EEeCCCCcc
Confidence            999999874

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=97.34  E-value=0.00035  Score=66.65  Aligned_cols=71  Identities=17%  Similarity=0.267  Sum_probs=55.2

Q ss_pred             EEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          159 WLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       159 VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      |+|||||.|.+++-+-..|..-+.++|+++.|+ +..+.|..     +  .++.+|+.++....      -..+|+++.-
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~-~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~gg   66 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQ-KTYEANFG-----N--KVPFGDITKISPSD------IPDFDILLGG   66 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHH-HHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEEec
Confidence            689999999999877777887788999999997 89888852     2  24567877764211      2468999999


Q ss_pred             CCCCC
Q 022298          239 PPYTA  243 (299)
Q Consensus       239 PPY~~  243 (299)
                      ||...
T Consensus        67 ~PCq~   71 (315)
T TIGR00675        67 FPCQP   71 (315)
T ss_pred             CCCcc
Confidence            99863

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.30  E-value=0.0017  Score=58.98  Aligned_cols=94  Identities=23%  Similarity=0.163  Sum_probs=73.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCC--CCEEEEECCccchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLR--PGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~--~~~VLDLfaGSGalgIEAl-SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      |-..+.+.+.+++.++....    ..  +.+|+|+|+|.|-=|+-.+ .+-..+|+.+|.+.+-+ ..++.=.+.+++.|
T Consensus        44 ~~~~e~~~rHilDSl~~~~~----~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~-~FL~~~~~eL~L~n  118 (215)
T COG0357          44 RDPEELWQRHILDSLVLLPY----LDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI-AFLREVKKELGLEN  118 (215)
T ss_pred             CCHHHHHHHHHHHHhhhhhc----ccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH-HHHHHHHHHhCCCC
Confidence            44456788888888865321    22  5899999999998888744 55444599999999997 89999999999976


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCC-eeEEEE
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGP-FDYMSV  237 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~-fDlI~i  237 (299)
                       ++++++.++++-..        .+ ||+|.+
T Consensus       119 -v~i~~~RaE~~~~~--------~~~~D~vts  141 (215)
T COG0357         119 -VEIVHGRAEEFGQE--------KKQYDVVTS  141 (215)
T ss_pred             -eEEehhhHhhcccc--------cccCcEEEe
Confidence             89999999987522        23 999884

>PRK11524 putative methyltransferase; Provisional

Probab=97.29  E-value=0.00091  Score=62.72  Aligned_cols=46  Identities=17%  Similarity=0.174  Sum_probs=39.9

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW  201 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~  201 (299)
                      .+|..|||.|||||+.++.|...|- +.+++|++++.+ +++++-++.
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~-~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYI-KMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHH-HHHHHHHHh
Confidence            3689999999999999998888875 589999999997 888887653

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.26  E-value=0.00041  Score=63.15  Aligned_cols=73  Identities=18%  Similarity=0.249  Sum_probs=54.0

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ...+|.|||||+|.-.--.+.| ....++++|.|++++ +-++.-     +.+ +++.++|+..|-        ....+|
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-a~Aa~r-----lp~-~~f~~aDl~~w~--------p~~~~d   94 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-AKAAQR-----LPD-ATFEEADLRTWK--------PEQPTD   94 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-HHHHHh-----CCC-CceecccHhhcC--------CCCccc
Confidence            3578999999999876444445 455799999999997 555332     223 678899998873        346899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      ++|.|--+.
T Consensus        95 llfaNAvlq  103 (257)
T COG4106          95 LLFANAVLQ  103 (257)
T ss_pred             hhhhhhhhh
Confidence            999987655

>PRK13699 putative methylase; Provisional

Probab=97.24  E-value=0.0014  Score=59.73  Aligned_cols=46  Identities=20%  Similarity=0.144  Sum_probs=40.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~  202 (299)
                      ++..|||.|||||+.++.|...|- +.+++|+++..+ +.+.+-++..
T Consensus       163 ~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~-~~~~~r~~~~  208 (227)
T PRK13699        163 PNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYH-RAGQQRLAAV  208 (227)
T ss_pred             CCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHH-HHHHHHHHHH
Confidence            588999999999999998888775 589999999987 8888777654

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.21  E-value=0.00078  Score=65.14  Aligned_cols=69  Identities=17%  Similarity=0.073  Sum_probs=53.2

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ..+.++|||||++|.+.-.++.+|+ +|++||..+-+-  .    +..   .++++.++.|...+...       .+.+|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~--~----L~~---~~~V~h~~~d~fr~~p~-------~~~vD  272 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQ--S----LMD---TGQVEHLRADGFKFRPP-------RKNVD  272 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCH--h----hhC---CCCEEEEeccCcccCCC-------CCCCC
Confidence            4688999999999999999999999 799999766432  2    211   24588888888776421       36799


Q ss_pred             EEEEcC
Q 022298          234 YMSVTP  239 (299)
Q Consensus       234 lI~iDP  239 (299)
                      ++++|-
T Consensus       273 wvVcDm  278 (357)
T PRK11760        273 WLVCDM  278 (357)
T ss_pred             EEEEec
Confidence            999986

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.10  E-value=0.0063  Score=58.09  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=65.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++..++|.=+|-|.-+.+.+.+ +..+|+++|.|+.|+ +.++++++.+  .+++++++++..++...+...  ....+|
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al-~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~--~~~~vD   94 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI-AFAKERLSDF--EGRVVLIHDNFANFFEHLDEL--LVTKID   94 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc--CCCccc
Confidence            5779999999999999988875 336799999999998 9999988765  467899999988776543211  124799


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      .|++|-=...
T Consensus        95 gIl~DLGvSS  104 (305)
T TIGR00006        95 GILVDLGVSS  104 (305)
T ss_pred             EEEEeccCCH
Confidence            9999985543

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.07  E-value=0.00013  Score=66.93  Aligned_cols=75  Identities=24%  Similarity=0.325  Sum_probs=51.7

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM  235 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI  235 (299)
                      -.++||||||||-+|.+.-.+ +.+.++||+|..++ +.+.+-    |.-+  ++.+.|+..|+...     ..++||+|
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl-~kA~eK----g~YD--~L~~Aea~~Fl~~~-----~~er~DLi  192 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML-AKAHEK----GLYD--TLYVAEAVLFLEDL-----TQERFDLI  192 (287)
T ss_pred             cceeeecccCcCcccHhHHHH-HhhccCCchhHHHH-HHHHhc----cchH--HHHHHHHHHHhhhc-----cCCcccch
Confidence            368999999999999765455 56799999999987 655442    2222  35667777776532     25789998


Q ss_pred             EEc--CCCCC
Q 022298          236 SVT--PPYTA  243 (299)
Q Consensus       236 ~iD--PPY~~  243 (299)
                      ..-  -||-.
T Consensus       193 ~AaDVl~YlG  202 (287)
T COG4976         193 VAADVLPYLG  202 (287)
T ss_pred             hhhhHHHhhc
Confidence            742  25554

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.02  E-value=0.0018  Score=63.92  Aligned_cols=122  Identities=19%  Similarity=0.245  Sum_probs=79.5

Q ss_pred             eeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCC-C----CCCCCCEEEEECCccchHH--HHHHHcCCCEEEEEeC
Q 022298          114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGC-P----ASLRPGRWLDLYSGTGSVG--IEAISRGCSEVHFVEM  186 (299)
Q Consensus       114 Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~-~----~~~~~~~VLDLfaGSGalg--IEAlSrGa~~V~~VD~  186 (299)
                      |+|.+.-+.+-++..+-|.+..+.+-.+ +||....+ +    ...++.|+||+||-.|.=.  |.++-.+-..+++.|.
T Consensus       196 ~~ws~vgl~v~~s~vpigat~e~lag~~-~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~  274 (460)
T KOG1122|consen  196 GKWSKVGLVVFDSVVPIGATPEYLAGHY-MLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDS  274 (460)
T ss_pred             cccccceEEEecCccccCCchhhcccce-eeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEeccc
Confidence            4565555554444444555554332221 22221100 0    1246899999999999544  4444444456999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       187 n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      |...+ +.++.|+..+|+.+ ..+.+.|..+|-...     ..++||-|++|-|...
T Consensus       275 n~~r~-~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~-----~~~~fDRVLLDAPCSG  324 (460)
T KOG1122|consen  275 NENRL-KSLKANLHRLGVTN-TIVSNYDGREFPEKE-----FPGSFDRVLLDAPCSG  324 (460)
T ss_pred             chHHH-HHHHHHHHHhCCCc-eEEEccCcccccccc-----cCcccceeeecCCCCC
Confidence            99998 99999999999976 567788887653221     1248999999999986

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.98  E-value=0.0044  Score=60.42  Aligned_cols=81  Identities=19%  Similarity=0.197  Sum_probs=65.7

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh---C--C-CCcEEEEEcchhhHHHHHhhhcC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT---G--F-LDVSSIHTVRVETFLERAEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~---g--~-~~~~~vi~~D~~~~l~~~~~~~~  227 (299)
                      ...+||=+|.|-|--.-|.+.. +..+++-||.||+++ +.+++|.-.-   +  + +.+++++..|++.|++..     
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~mi-ela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-----  362 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMI-ELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-----  362 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHH-HHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-----
Confidence            3568999999999988888876 478999999999998 9999765322   1  2 247899999999999765     


Q ss_pred             CCCCeeEEEEcCCCC
Q 022298          228 KDGPFDYMSVTPPYT  242 (299)
Q Consensus       228 ~~~~fDlI~iDPPY~  242 (299)
                       .+.||.|++|-|=-
T Consensus       363 -~~~fD~vIVDl~DP  376 (508)
T COG4262         363 -ADMFDVVIVDLPDP  376 (508)
T ss_pred             -cccccEEEEeCCCC
Confidence             46999999998743

>PRK10458 DNA cytosine methylase; Provisional

Probab=96.97  E-value=0.0021  Score=64.76  Aligned_cols=83  Identities=17%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH----------Hhhh
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER----------AEQF  225 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~----------~~~~  225 (299)
                      .-+++|||||.|.+.+-+-..|..-|.++|+|+.|+ +..+.|....   ....++.+|+.++...          ...+
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~-~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~  163 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAV-RTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHI  163 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHH-HHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhh
Confidence            458999999999999877667888889999999997 8988885211   1123445555544210          0000


Q ss_pred             cCCCCCeeEEEEcCCCC
Q 022298          226 VGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~  242 (299)
                      ......+|+++.-||..
T Consensus       164 ~~~~p~~DvL~gGpPCQ  180 (467)
T PRK10458        164 RQHIPDHDVLLAGFPCQ  180 (467)
T ss_pred             hccCCCCCEEEEcCCCC
Confidence            00113689999999986

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.0021  Score=58.23  Aligned_cols=90  Identities=22%  Similarity=0.184  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCCCE--EEEEeCCHHHHHHHHHHHHHHhCC--------
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSE--VHFVEMDPWVVSNVLIPNLEWTGF--------  204 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa~~--V~~VD~n~~Al~~~a~~N~~~~g~--------  204 (299)
                      +-..+|+.|....     .+|.++||+|+|||.++-.+.. -|+.-  +++||.-++.+ +..++|++..-.        
T Consensus        68 mha~~le~L~~~L-----~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLV-e~Sk~nl~k~i~~~e~~~~~  141 (237)
T KOG1661|consen   68 MHATALEYLDDHL-----QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELV-EYSKKNLDKDITTSESSSKL  141 (237)
T ss_pred             HHHHHHHHHHHhh-----ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHH-HHHHHHHHhhccCchhhhhh
Confidence            3345556665321     3689999999999988765442 23322  49999999998 999999987641        


Q ss_pred             -CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          205 -LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       205 -~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                       ..+..++.+|......       ...+||.|++-
T Consensus       142 ~~~~l~ivvGDgr~g~~-------e~a~YDaIhvG  169 (237)
T KOG1661|consen  142 KRGELSIVVGDGRKGYA-------EQAPYDAIHVG  169 (237)
T ss_pred             ccCceEEEeCCccccCC-------ccCCcceEEEc
Confidence             1346677788765432       24689999986

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.92  E-value=0.013  Score=55.53  Aligned_cols=80  Identities=19%  Similarity=0.169  Sum_probs=64.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG---a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      ...+|||++||.|-.-++++...   ..+|...|.++..+ +..++-++..|+.+.+++.++|+++.....    ....+
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~~~l~----~l~p~  209 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDRDSLA----ALDPA  209 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCHhHhh----ccCCC
Confidence            46799999999999999998642   46899999999998 999999999999987799999998864322    22345


Q ss_pred             eeEEEEcC
Q 022298          232 FDYMSVTP  239 (299)
Q Consensus       232 fDlI~iDP  239 (299)
                      ++++++-=
T Consensus       210 P~l~iVsG  217 (311)
T PF12147_consen  210 PTLAIVSG  217 (311)
T ss_pred             CCEEEEec
Confidence            66666543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=96.81  E-value=0.01  Score=54.37  Aligned_cols=76  Identities=14%  Similarity=0.100  Sum_probs=60.4

Q ss_pred             CEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298          157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM  235 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI  235 (299)
                      ..+||+|||.|.+-++.+.+- -...+|||+....+ ..+.+-+...++. ++.+++.|+..++..+.    .++..|-|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~----~~~sl~~I  123 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLK-NLRLLCGDAVEVLDYLI----PDGSLDKI  123 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCC-cEEEEcCCHHHHHHhcC----CCCCeeEE
Confidence            589999999999999977653 34699999999988 7888888888886 48999999999987652    23366655


Q ss_pred             EEc
Q 022298          236 SVT  238 (299)
Q Consensus       236 ~iD  238 (299)
                      +++
T Consensus       124 ~i~  126 (227)
T COG0220         124 YIN  126 (227)
T ss_pred             EEE
Confidence            543

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.80  E-value=0.0024  Score=63.45  Aligned_cols=55  Identities=22%  Similarity=0.222  Sum_probs=50.7

Q ss_pred             CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298          157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~  212 (299)
                      ..|||+|+|||-+++.|+..||+.|+++|.-..++ +++++=..++|..+++++++
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~SdkI~vIn  122 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMSDKINVIN  122 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCccceeeec
Confidence            46899999999999999999999999999999998 99999999999988887765

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.80  E-value=0.0065  Score=55.35  Aligned_cols=74  Identities=16%  Similarity=0.118  Sum_probs=62.8

Q ss_pred             CCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      +.++.|+||--|.++++++..+ +..++++|+++..+ +.+.+|+..+++.+++++..+|.+..+.       .+..+|+
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~~~i~vr~~dgl~~l~-------~~d~~d~   88 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLSERIDVRLGDGLAVLE-------LEDEIDV   88 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCcceEEEeccCCccccC-------ccCCcCE
Confidence            5669999999999999999876 77899999999998 9999999999999999999999866542       2346776


Q ss_pred             EEE
Q 022298          235 MSV  237 (299)
Q Consensus       235 I~i  237 (299)
                      |++
T Consensus        89 ivI   91 (226)
T COG2384          89 IVI   91 (226)
T ss_pred             EEE
Confidence            665

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.0013  Score=56.69  Aligned_cols=88  Identities=22%  Similarity=0.289  Sum_probs=63.4

Q ss_pred             eEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 022298          119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN  198 (299)
Q Consensus       119 r~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N  198 (299)
                      |++++|.-   -.|++.+ +.+++.+..       ....+.+|||+|-|-+-+.|+..|+...++||+|+.-+ ...+-.
T Consensus        47 RR~cvPYV---pAtteQv-~nVLSll~~-------n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLV-aysrl~  114 (199)
T KOG4058|consen   47 RRLCVPYV---PATTEQV-ENVLSLLRG-------NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLV-AYSRLH  114 (199)
T ss_pred             heeccccc---CccHHHH-HHHHHHccC-------CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHH-HHHHHH
Confidence            46666652   2344433 344455543       24578999999999999988888988899999999988 788777


Q ss_pred             HHHhCCCCcEEEEEcchhhH
Q 022298          199 LEWTGFLDVSSIHTVRVETF  218 (299)
Q Consensus       199 ~~~~g~~~~~~vi~~D~~~~  218 (299)
                      .-..|+.....+.+.|..++
T Consensus       115 a~R~g~~k~trf~RkdlwK~  134 (199)
T KOG4058|consen  115 AWRAGCAKSTRFRRKDLWKV  134 (199)
T ss_pred             HHHHhcccchhhhhhhhhhc
Confidence            66667766666777776554

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.72  E-value=0.0055  Score=51.42  Aligned_cols=59  Identities=17%  Similarity=0.021  Sum_probs=44.9

Q ss_pred             CCCEEEEECCccchHHHHHHH-----cCCCEEEEEeCCHHHHHHHHHHHHHHhC--CCCcEEEEEcc
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS-----RGCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVR  214 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS-----rGa~~V~~VD~n~~Al~~~a~~N~~~~g--~~~~~~vi~~D  214 (299)
                      ....|+|+|||-|.++..++.     .-..+|++||.|+..+ +.+.+..+..+  +..+.+...++
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~   90 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGD   90 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccc
Confidence            567999999999999987766     3345799999999997 88888888777  33334444444

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.71  E-value=0.0013  Score=60.48  Aligned_cols=80  Identities=14%  Similarity=0.059  Sum_probs=52.4

Q ss_pred             CCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHhhhcCCCC
Q 022298          152 ASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDG  230 (299)
Q Consensus       152 ~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~-~D~~~~l~~~~~~~~~~~  230 (299)
                      +++.+..+||+||-||.|.--++.+||++|++||....-+ .+=      +..+.++.++. .++..+....     -.+
T Consensus        76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql-~~k------LR~d~rV~~~E~tN~r~l~~~~-----~~~  143 (245)
T COG1189          76 LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQL-HWK------LRNDPRVIVLERTNVRYLTPED-----FTE  143 (245)
T ss_pred             cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCcc-CHh------HhcCCcEEEEecCChhhCCHHH-----ccc
Confidence            3578999999999999999999999999999999977544 221      11123333332 3433322111     124


Q ss_pred             CeeEEEEcCCCCC
Q 022298          231 PFDYMSVTPPYTA  243 (299)
Q Consensus       231 ~fDlI~iDPPY~~  243 (299)
                      ..|++++|--|..
T Consensus       144 ~~d~~v~DvSFIS  156 (245)
T COG1189         144 KPDLIVIDVSFIS  156 (245)
T ss_pred             CCCeEEEEeehhh
Confidence            6778888877664

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=96.69  E-value=0.0031  Score=57.72  Aligned_cols=68  Identities=19%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ...-+||++||||-.|-.....| ...++||+++.++ +.+.+  +...  +  .++.+|+-.-+.      ...+.||-
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML-~~a~~--~e~e--g--dlil~DMG~Glp------frpGtFDg  115 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSML-EQAVE--RELE--G--DLILCDMGEGLP------FRPGTFDG  115 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHH-HHHHH--hhhh--c--CeeeeecCCCCC------CCCCccce
Confidence            46789999999999886655567 5789999999998 88876  3332  1  367788775542      23578997


Q ss_pred             EE
Q 022298          235 MS  236 (299)
Q Consensus       235 I~  236 (299)
                      ++
T Consensus       116 ~I  117 (270)
T KOG1541|consen  116 VI  117 (270)
T ss_pred             EE
Confidence            76

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=96.64  E-value=0.0053  Score=62.15  Aligned_cols=83  Identities=18%  Similarity=0.160  Sum_probs=57.2

Q ss_pred             CCCEEEEECCccchHHHHHHH---cC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHhhhcCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS---RG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGK  228 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS---rG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~-~~~vi~~D~~~~l~~~~~~~~~  228 (299)
                      .++.+.|++||||.+-+++..   .|  ....++-|.++... ..++.|+...+... ...+..+|-..-...     ..
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~-~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-----~~  290 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY-NLCRMNMILHNIDYANFNIINADTLTTKEW-----EN  290 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH-HHHHHHHHHcCCCccccCcccCCcCCCccc-----cc
Confidence            357899999999999987653   22  24689999999997 89999987666532 233334443221000     01


Q ss_pred             CCCeeEEEEcCCCCC
Q 022298          229 DGPFDYMSVTPPYTA  243 (299)
Q Consensus       229 ~~~fDlI~iDPPY~~  243 (299)
                      ..+||.|++||||..
T Consensus       291 ~~~~D~v~~NpPf~~  305 (501)
T TIGR00497       291 ENGFEVVVSNPPYSI  305 (501)
T ss_pred             cccCCEEeecCCccc
Confidence            356999999999986

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.62  E-value=0.0048  Score=58.12  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=65.2

Q ss_pred             CCCCCEEEEECCccchHHHH-HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          153 SLRPGRWLDLYSGTGSVGIE-AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       153 ~~~~~~VLDLfaGSGalgIE-AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      ++.|+.++=+| ----.||. ||++-+.+|..||+|.+-+ +.+.+-++..|+.| ++.+.-|+...+..-.     ..+
T Consensus       150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~-----~~k  221 (354)
T COG1568         150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGYNN-IEAFVFDLRNPLPEDL-----KRK  221 (354)
T ss_pred             CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCccc-hhheeehhcccChHHH-----Hhh
Confidence            47888888776 34455665 3455678999999999998 99999999999865 7788888887765431     478


Q ss_pred             eeEEEEcCCCCC
Q 022298          232 FDYMSVTPPYTA  243 (299)
Q Consensus       232 fDlI~iDPPY~~  243 (299)
                      ||+++.|||+..
T Consensus       222 FDvfiTDPpeTi  233 (354)
T COG1568         222 FDVFITDPPETI  233 (354)
T ss_pred             CCeeecCchhhH
Confidence            999999999974

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.45  E-value=0.0076  Score=54.61  Aligned_cols=63  Identities=14%  Similarity=0.047  Sum_probs=46.7

Q ss_pred             CCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ..+|+|+|+|+|.++++++.+ ..-+++..|. |..+ +.+++       .++++++.+|+++-+         .. +|+
T Consensus       101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~-~~~~~-------~~rv~~~~gd~f~~~---------P~-~D~  161 (241)
T PF00891_consen  101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVI-EQAKE-------ADRVEFVPGDFFDPL---------PV-ADV  161 (241)
T ss_dssp             SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHH-CCHHH-------TTTEEEEES-TTTCC---------SS-ESE
T ss_pred             ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhh-hcccc-------ccccccccccHHhhh---------cc-ccc
Confidence            468999999999999998875 3347999999 6666 66666       578999999987432         23 999


Q ss_pred             EEE
Q 022298          235 MSV  237 (299)
Q Consensus       235 I~i  237 (299)
                      +++
T Consensus       162 ~~l  164 (241)
T PF00891_consen  162 YLL  164 (241)
T ss_dssp             EEE
T ss_pred             eee
Confidence            887

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.39  E-value=0.019  Score=55.33  Aligned_cols=101  Identities=12%  Similarity=-0.012  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC---------CCC
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG---------FLD  206 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g---------~~~  206 (299)
                      |+..+.+.......  ....+.+|||||||=|.--.=-...+..+++++|++..++ +-+++=.+.+.         ..=
T Consensus        45 vKs~LI~~~~~~~~--~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si-~ea~~Ry~~~~~~~~~~~~~~~f  121 (331)
T PF03291_consen   45 VKSVLIQKYAKKVK--QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESI-EEARERYKQLKKRNNSKQYRFDF  121 (331)
T ss_dssp             HHHHHHHHHCHCCC--CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHH-HHHHHHHHHHHTSTT-HTSEECC
T ss_pred             HHHHHHHHHHHhhh--ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHH-HHHHHHHHHhccccccccccccc
Confidence            55555555433210  0125789999999988755444556889999999999998 77777552221         111


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      ...++.+|...-.- ...+.....+||+|-+-=-
T Consensus       122 ~a~f~~~D~f~~~l-~~~~~~~~~~FDvVScQFa  154 (331)
T PF03291_consen  122 IAEFIAADCFSESL-REKLPPRSRKFDVVSCQFA  154 (331)
T ss_dssp             EEEEEESTTCCSHH-HCTSSSTTS-EEEEEEES-
T ss_pred             hhheeccccccchh-hhhccccCCCcceeehHHH
Confidence            24567777653211 0111112258999987643

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=96.32  E-value=0.011  Score=53.74  Aligned_cols=94  Identities=17%  Similarity=0.117  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchH-HHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV-GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGal-gIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~  212 (299)
                      +.-++.+|+-+....+   ......||++|||||+- -..-.+++. +|+++|-|+.+- +++.+.++...-.+-..++.
T Consensus        58 ~~ykrelFs~i~~~~g---k~~K~~vLEvgcGtG~Nfkfy~~~p~~-svt~lDpn~~me-e~~~ks~~E~k~~~~~~fvv  132 (252)
T KOG4300|consen   58 DSYKRELFSGIYYFLG---KSGKGDVLEVGCGTGANFKFYPWKPIN-SVTCLDPNEKME-EIADKSAAEKKPLQVERFVV  132 (252)
T ss_pred             HHHHHHHHhhhHHHhc---ccCccceEEecccCCCCcccccCCCCc-eEEEeCCcHHHH-HHHHHHHhhccCcceEEEEe
Confidence            3456778877653311   01234579999999963 332234666 699999999996 99999888775444233777


Q ss_pred             cchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          213 VRVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       213 ~D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      ++.++.-..      .++++|.|+.-
T Consensus       133 a~ge~l~~l------~d~s~DtVV~T  152 (252)
T KOG4300|consen  133 ADGENLPQL------ADGSYDTVVCT  152 (252)
T ss_pred             echhcCccc------ccCCeeeEEEE
Confidence            887765321      25789998853

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.23  E-value=0.0053  Score=48.39  Aligned_cols=74  Identities=16%  Similarity=0.136  Sum_probs=29.7

Q ss_pred             EEECCccchHHHHHH---HcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298          160 LDLYSGTGSVGIEAI---SRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM  235 (299)
Q Consensus       160 LDLfaGSGalgIEAl---SrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI  235 (299)
                      |++|+..|.-++..+   ..+. .++++||..+. . +..+++++..++.+++++++++..+.+....     .++||+|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli   73 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLI   73 (106)
T ss_dssp             --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHH-----H--EEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEE
Confidence            577877776654433   2222 37999999995 2 4556666666777779999999988876552     3689999


Q ss_pred             EEcCC
Q 022298          236 SVTPP  240 (299)
Q Consensus       236 ~iDPP  240 (299)
                      ++|=.
T Consensus        74 ~iDg~   78 (106)
T PF13578_consen   74 FIDGD   78 (106)
T ss_dssp             EEES-
T ss_pred             EECCC
Confidence            99975

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=96.14  E-value=0.0078  Score=55.78  Aligned_cols=48  Identities=17%  Similarity=0.309  Sum_probs=43.1

Q ss_pred             CCCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298          154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~  202 (299)
                      .++..+||+||-+|.+++..++ -|+..+.+||||+.-+ +.|++|++..
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-~~Ark~~r~~  105 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-QRARKEIRFP  105 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-HHHHHhcccc
Confidence            4678999999999999998776 5899999999999998 9999999865

>PRK00536 speE spermidine synthase; Provisional

Probab=96.02  E-value=0.044  Score=51.29  Aligned_cols=124  Identities=10%  Similarity=-0.022  Sum_probs=76.0

Q ss_pred             ccccccceEEEEeeeeCCeEEecCCCCCCCCCHH--HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC
Q 022298          101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMME--VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC  178 (299)
Q Consensus       101 ~p~~~~~~mrIi~Gk~~Gr~L~~p~~~~~RPttd--~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa  178 (299)
                      .-+..++-+.|..-...|+-|... +... -+.|  .=-|.+.......     .-..++||=+|.|=|...-|.+... 
T Consensus        23 ~~kS~~Q~i~i~es~~fGr~LvLD-~~~~-te~dEfiYHEmLvHppl~~-----h~~pk~VLIiGGGDGg~~REvLkh~-   94 (262)
T PRK00536         23 DVRSEHNILEIFKSKDFGEIAMLN-KQLL-FKNFLHIESELLAHMGGCT-----KKELKEVLIVDGFDLELAHQLFKYD-   94 (262)
T ss_pred             ccCCCCcEEEEEEccccccEEEEe-eeee-ecchhhhHHHHHHHHHHhh-----CCCCCeEEEEcCCchHHHHHHHCcC-
Confidence            334445556666666667777766 4331 1112  1123332221110     1246899999999999999999875 


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHHHh--CCC-CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          179 SEVHFVEMDPWVVSNVLIPNLEWT--GFL-DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       179 ~~V~~VD~n~~Al~~~a~~N~~~~--g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .+|+.||+|++.+ +.+++-+-.+  +++ .+++++.     +....     ..++||+|++|-.|..
T Consensus        95 ~~v~mVeID~~Vv-~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~-----~~~~fDVIIvDs~~~~  151 (262)
T PRK00536         95 THVDFVQADEKIL-DSFISFFPHFHEVKNNKNFTHAK-----QLLDL-----DIKKYDLIICLQEPDI  151 (262)
T ss_pred             CeeEEEECCHHHH-HHHHHHCHHHHHhhcCCCEEEee-----hhhhc-----cCCcCCEEEEcCCCCh
Confidence            3899999999998 9999833222  233 4677764     12111     1368999999955554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.99  E-value=0.039  Score=56.12  Aligned_cols=79  Identities=13%  Similarity=0.047  Sum_probs=58.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+..+||+|||.|.+.++.+.+- -..+++||+....+ ..+.+-++..++.| +.+++.|+..+....     ....+|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~-~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~-----~~~sv~  419 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGV-ANVLKLAGEQNITN-FLLFPNNLDLILNDL-----PNNSLD  419 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHcCCCe-EEEEcCCHHHHHHhc-----Cccccc
Confidence            46789999999999999977653 34699999999987 66666677777765 778888876554332     245677


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      -|+++=|
T Consensus       420 ~i~i~FP  426 (506)
T PRK01544        420 GIYILFP  426 (506)
T ss_pred             EEEEECC
Confidence            7776544

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=95.80  E-value=0.021  Score=52.97  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=44.5

Q ss_pred             EEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       160 LDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      |..|.||=.++..+ .|..++.+++|+.+... +.+++|+..   ..++++++.|.++.+...   .-+..+=-+|++||
T Consensus        62 l~~YPGSP~ia~~l-lR~qDrl~l~ELHp~d~-~~L~~~~~~---~~~v~v~~~DG~~~l~al---lPP~~rRglVLIDP  133 (245)
T PF04378_consen   62 LRFYPGSPAIAARL-LREQDRLVLFELHPQDF-EALKKNFRR---DRRVRVHHRDGYEGLKAL---LPPPERRGLVLIDP  133 (245)
T ss_dssp             --EEE-HHHHHHHH-S-TTSEEEEE--SHHHH-HHHTTS--T---TS-EEEE-S-HHHHHHHH----S-TTS-EEEEE--
T ss_pred             cCcCCCCHHHHHHh-CCccceEEEEecCchHH-HHHHHHhcc---CCccEEEeCchhhhhhhh---CCCCCCCeEEEECC
Confidence            77888887777654 45678899999999998 999999764   246899999999887654   12234456999999


Q ss_pred             CCCCC
Q 022298          240 PYTAV  244 (299)
Q Consensus       240 PY~~~  244 (299)
                      ||...
T Consensus       134 pYE~~  138 (245)
T PF04378_consen  134 PYEQK  138 (245)
T ss_dssp             ---ST
T ss_pred             CCCCc
Confidence            99974

; PDB: 2OO3_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.72  E-value=0.053  Score=51.91  Aligned_cols=84  Identities=12%  Similarity=0.032  Sum_probs=58.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+..++|.=-|.|.-+-+.|.. +..+++++|.|+.|+ +.++++++.+  .+++.+++++..++...+... .....+|
T Consensus        20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~-~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~-~~~~~~d   95 (310)
T PF01795_consen   20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL-ERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL-NGINKVD   95 (310)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH-HHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT-TTTS-EE
T ss_pred             CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH-HHHHHHHhhc--cceEEEEeccHHHHHHHHHHc-cCCCccC
Confidence            5789999999999999988875 336899999999998 8888887644  578999998877665544322 1235899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      -|++|.=..
T Consensus        96 giL~DLGvS  104 (310)
T PF01795_consen   96 GILFDLGVS  104 (310)
T ss_dssp             EEEEE-S--
T ss_pred             EEEEccccC
Confidence            999998544

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=95.72  E-value=0.011  Score=54.69  Aligned_cols=58  Identities=17%  Similarity=0.151  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCC-CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRP-GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~-~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~  197 (299)
                      .||.=.   -..|+.+...      -++ ...+|+|||+|.-++-+++. .++|+++|.|..++ +.+++
T Consensus        15 ARP~YP---tdw~~~ia~~------~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL-~~a~k   73 (261)
T KOG3010|consen   15 ARPSYP---TDWFKKIASR------TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAML-KVAKK   73 (261)
T ss_pred             cCCCCc---HHHHHHHHhh------CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHH-HHhhc
Confidence            466644   2455666543      123 37999999999666655554 67899999999998 88876

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.55  E-value=0.054  Score=50.74  Aligned_cols=61  Identities=21%  Similarity=0.180  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHH
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLE  200 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS--rGa~~V~~VD~n~~Al~~~a~~N~~  200 (299)
                      +...+|+-+..+..   ++...+|||+|||+|+....+..  ....++++||.|+.+. ++.+.=++
T Consensus        17 ~~~~vl~El~~r~p---~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~-~l~~~l~~   79 (274)
T PF09243_consen   17 AVYRVLSELRKRLP---DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEML-ELAKRLLR   79 (274)
T ss_pred             HHHHHHHHHHHhCc---CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHH-HHHHHHHh
Confidence            44455555554321   35678999999999986654443  2467899999999997 77665443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=95.53  E-value=0.09  Score=48.92  Aligned_cols=94  Identities=14%  Similarity=0.124  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~  215 (299)
                      +.+...+.++..      ..+.. |+.|+||=-++-. +-|+.++..++|..|.-. ..++.|+..   ..++++.++|-
T Consensus        76 ~l~~yl~~i~~l------N~~~~-l~~YpGSP~lA~~-llR~qDRl~l~ELHp~D~-~~L~~~f~~---d~~vrv~~~DG  143 (279)
T COG2961          76 ELEPYLDAVRQL------NPGGG-LRYYPGSPLLARQ-LLREQDRLVLTELHPSDA-PLLRNNFAG---DRRVRVLRGDG  143 (279)
T ss_pred             HHHHHHHHHHHh------CCCCC-cccCCCCHHHHHH-HcchhceeeeeecCccHH-HHHHHHhCC---CcceEEEecCc
Confidence            444555555542      12233 9999999777653 457788999999999997 899999762   34688999998


Q ss_pred             hhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          216 ETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       216 ~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      +..+...  + .+.++=-+|++||||...
T Consensus       144 ~~~l~a~--L-PP~erRglVLIDPPfE~~  169 (279)
T COG2961         144 FLALKAH--L-PPKERRGLVLIDPPFELK  169 (279)
T ss_pred             HHHHhhh--C-CCCCcceEEEeCCCcccc
Confidence            7766432  1 223455799999999974

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=95.44  E-value=0.033  Score=50.74  Aligned_cols=75  Identities=21%  Similarity=0.210  Sum_probs=49.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ...++||+|||.|-++-..|..-+.+|..||.++.-+ +.+++.+...+ ....++++.-+.+|...       ..+||+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl-~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YDl  125 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFL-EQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYDL  125 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHH-HHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EEE
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHH-HHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEeE
Confidence            4579999999999999877777789999999999987 77876543311 22356788888887532       368999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |.+.
T Consensus       126 IW~Q  129 (218)
T PF05891_consen  126 IWIQ  129 (218)
T ss_dssp             EEEE
T ss_pred             EEeh
Confidence            9873

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]

Probab=94.97  E-value=0.022  Score=60.06  Aligned_cols=46  Identities=35%  Similarity=0.518  Sum_probs=40.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW  201 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~  201 (299)
                      .++..++|.|||-|++.+||+..|. .|++||.||-|. -.+++-++.
T Consensus        89 ~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAy-lfLKavlEy  134 (875)
T COG1743          89 FEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAY-LFLKAVLEY  134 (875)
T ss_pred             ccCCcccccccCCCccchHHHhcCc-eeEEEecccHHH-HHHHHHHhc
Confidence            3578999999999999999999997 599999999997 777777654

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.86  E-value=0.039  Score=51.99  Aligned_cols=76  Identities=18%  Similarity=0.151  Sum_probs=42.4

Q ss_pred             CCEEEEECCccchHHHHHHH--cC-CCEEEEEeCCHHHHHHHHHHHHH-HhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          156 PGRWLDLYSGTGSVGIEAIS--RG-CSEVHFVEMDPWVVSNVLIPNLE-WTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlS--rG-a~~V~~VD~n~~Al~~~a~~N~~-~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      ..+|+=+|||.=-++.-.+.  .| ...|+++|+|+.|+ +.+++=++ ..++.++.+++.+|+.+....       -..
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-------l~~  192 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEAN-ELARRLVASDLGLSKRMSFITADVLDVTYD-------LKE  192 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHH-HHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHhhcccccCCeEEEecchhccccc-------ccc
Confidence            35888776554333322232  23 23689999999998 89988666 567777899999998765322       257


Q ss_pred             eeEEEEcC
Q 022298          232 FDYMSVTP  239 (299)
Q Consensus       232 fDlI~iDP  239 (299)
                      ||+||+--
T Consensus       193 ~DvV~lAa  200 (276)
T PF03059_consen  193 YDVVFLAA  200 (276)
T ss_dssp             -SEEEE-T
T ss_pred             CCEEEEhh
Confidence            99999765

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.77  E-value=0.41  Score=45.76  Aligned_cols=82  Identities=12%  Similarity=0.114  Sum_probs=64.8

Q ss_pred             CCCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .+++..+|.=-|-|.-+-+.|+.+  ..+++++|.|+.|+ +.+++-+..++  ++++++++....+...+...  .-.+
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai-~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~   96 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAI-AIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGK   96 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHH-HHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCc
Confidence            357899999999999999888875  35699999999998 99998887765  67999998876665443211  1358


Q ss_pred             eeEEEEcCC
Q 022298          232 FDYMSVTPP  240 (299)
Q Consensus       232 fDlI~iDPP  240 (299)
                      +|-|++|-=
T Consensus        97 vDGiL~DLG  105 (314)
T COG0275          97 VDGILLDLG  105 (314)
T ss_pred             eeEEEEecc
Confidence            999999874

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=94.55  E-value=0.044  Score=52.70  Aligned_cols=81  Identities=20%  Similarity=0.211  Sum_probs=56.2

Q ss_pred             EEEECCccchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH-HHHHhhhcCCCCCeeE
Q 022298          159 WLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGKDGPFDY  234 (299)
Q Consensus       159 VLDLfaGSGalgIEAlSr---Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~-l~~~~~~~~~~~~fDl  234 (299)
                      =+|+  |||+..|+.|-.   -.-.-.+.|++...+ +.++.|+..+++.+.+.+++...-+. +.... ....+..||+
T Consensus       106 GiDI--gtgasci~~llg~rq~n~~f~~teidd~s~-~~a~snV~qn~lss~ikvV~~~~~ktll~d~~-~~~~e~~ydF  181 (419)
T KOG2912|consen  106 GIDI--GTGASCIYPLLGARQNNWYFLATEIDDMSF-NYAKSNVEQNNLSSLIKVVKVEPQKTLLMDAL-KEESEIIYDF  181 (419)
T ss_pred             eeec--cCchhhhHHhhhchhccceeeeeecccccc-chhhccccccccccceeeEEecchhhcchhhh-ccCccceeeE
Confidence            3677  677788887642   113478899999998 99999999999988888877643222 11110 0112346999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      +.+||||-.
T Consensus       182 cMcNPPFfe  190 (419)
T KOG2912|consen  182 CMCNPPFFE  190 (419)
T ss_pred             EecCCchhh
Confidence            999999865

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=94.39  E-value=0.036  Score=47.95  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHH
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPW  189 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~  189 (299)
                      .+.+||||||+.|+++-.++.++  +.+|++||+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            35899999999999999888888  678999999886

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=94.08  E-value=0.24  Score=45.77  Aligned_cols=47  Identities=28%  Similarity=0.380  Sum_probs=39.0

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~  202 (299)
                      ..+..|||.|+|||+.++.|...|- ..+++|++++-+ +.+.+=+...
T Consensus       221 ~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~-~~~~~r~~~~  267 (302)
T COG0863         221 FPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYV-EVALKRLQEG  267 (302)
T ss_pred             CCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHH-HHHHHHHHhh
Confidence            4689999999999999998877765 589999999987 7776655543

>PRK11524 putative methyltransferase; Provisional

Probab=94.07  E-value=0.046  Score=51.23  Aligned_cols=31  Identities=23%  Similarity=0.316  Sum_probs=25.6

Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .+++++|+.+++..+     ..++||+||+||||..
T Consensus         9 ~~i~~gD~~~~l~~l-----~~~siDlIitDPPY~~   39 (284)
T PRK11524          9 KTIIHGDALTELKKI-----PSESVDLIFADPPYNI   39 (284)
T ss_pred             CEEEeccHHHHHHhc-----ccCcccEEEECCCccc
Confidence            578999999988654     2568999999999975

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=94.02  E-value=0.13  Score=50.15  Aligned_cols=88  Identities=18%  Similarity=0.153  Sum_probs=58.3

Q ss_pred             CCCEEEEECCccchHH---HHHHHcCCC--EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHh-hh-cC
Q 022298          155 RPGRWLDLYSGTGSVG---IEAISRGCS--EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE-QF-VG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalg---IEAlSrGa~--~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~-~~-~~  227 (299)
                      ++.+|||+||--|+=.   +||+..+..  .|++-|.++.-+ ..++.-+...... ...+.+.|+..+-.... .. ..
T Consensus       155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~-~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~~~  232 (375)
T KOG2198|consen  155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRL-NMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGNDK  232 (375)
T ss_pred             CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHH-HHHHHHHhccCCc-ceeeecccceeccccccccCchh
Confidence            5889999999999776   455554433  699999999987 7777766655433 35566666544322110 00 00


Q ss_pred             CCCCeeEEEEcCCCCCC
Q 022298          228 KDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       228 ~~~~fDlI~iDPPY~~~  244 (299)
                      ....||-|++|-|....
T Consensus       233 ~~~~fDrVLvDVPCS~D  249 (375)
T KOG2198|consen  233 EQLKFDRVLVDVPCSGD  249 (375)
T ss_pred             hhhhcceeEEecccCCC
Confidence            12479999999999863

>PRK13699 putative methylase; Provisional

Probab=93.91  E-value=0.046  Score=49.87  Aligned_cols=30  Identities=20%  Similarity=0.377  Sum_probs=25.2

Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +++++|..+.++.+     +.+++|+||.||||+.
T Consensus         3 ~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i   32 (227)
T PRK13699          3 RFILGNCIDVMARF-----PDNAVDFILTDPPYLV   32 (227)
T ss_pred             eEEechHHHHHHhC-----CccccceEEeCCCccc
Confidence            57899999988765     3688999999999973

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.83  E-value=0.2  Score=45.24  Aligned_cols=75  Identities=12%  Similarity=-0.017  Sum_probs=49.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l--~~~~~~~~~~~  230 (299)
                      .+.+|+||||--|+.+-.|..+..  ..|++||++|-..   +         .+ +.++++|+..--  ..+... -...
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---~---------~~-V~~iq~d~~~~~~~~~l~~~-l~~~  110 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---I---------PG-VIFLQGDITDEDTLEKLLEA-LGGA  110 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---C---------CC-ceEEeeeccCccHHHHHHHH-cCCC
Confidence            578999999999999998877532  2499999998653   1         12 566777764321  111100 1134


Q ss_pred             CeeEEEEcCCCCC
Q 022298          231 PFDYMSVTPPYTA  243 (299)
Q Consensus       231 ~fDlI~iDPPY~~  243 (299)
                      ++|+|+.|+--+.
T Consensus       111 ~~DvV~sD~ap~~  123 (205)
T COG0293         111 PVDVVLSDMAPNT  123 (205)
T ss_pred             CcceEEecCCCCc
Confidence            5799999985544

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=93.50  E-value=0.07  Score=48.40  Aligned_cols=36  Identities=19%  Similarity=0.434  Sum_probs=25.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHH
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV  191 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al  191 (299)
                      ...+++|+|||+|++++.+..++ ..|+.-|+|+..+
T Consensus        20 ~~~~~vepF~G~g~V~~~~~~~~-~~vi~ND~~~~l~   55 (260)
T PF02086_consen   20 KHKTYVEPFAGGGSVFLNLKQPG-KRVIINDINPDLI   55 (260)
T ss_dssp             S-SEEEETT-TTSHHHHCC---S-SEEEEEES-HHHH
T ss_pred             CCCEEEEEecchhHHHHHhcccc-cceeeeechHHHH
Confidence            47899999999999999876654 4799999999764

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=93.43  E-value=0.36  Score=46.71  Aligned_cols=82  Identities=17%  Similarity=0.055  Sum_probs=55.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC-CCC----cEEEEEcchhhHHHHHhhhc-CC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG-FLD----VSSIHTVRVETFLERAEQFV-GK  228 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g-~~~----~~~vi~~D~~~~l~~~~~~~-~~  228 (299)
                      .+..++||+||-|.=.+---..|+...+++||..-.+ +.+++--+... ...    .+.++.+|.+...  +..+. ..
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI-~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~--l~d~~e~~  193 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSI-NQARKRYRDMKNRFKKFIFTAVFIAADCFKER--LMDLLEFK  193 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhccH-HHHHHHHHHHHhhhhcccceeEEEEeccchhH--HHHhccCC
Confidence            4678999999999988777778899999999999988 88876443221 111    2567888865432  11111 12


Q ss_pred             CCCeeEEEEcC
Q 022298          229 DGPFDYMSVTP  239 (299)
Q Consensus       229 ~~~fDlI~iDP  239 (299)
                      ..+||+|-+-=
T Consensus       194 dp~fDivScQF  204 (389)
T KOG1975|consen  194 DPRFDIVSCQF  204 (389)
T ss_pred             CCCcceeeeee
Confidence            23489887654

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=93.21  E-value=0.32  Score=45.28  Aligned_cols=58  Identities=16%  Similarity=0.173  Sum_probs=42.0

Q ss_pred             CCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022298          156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~  216 (299)
                      ..+|+|++||.=-+++-..... ....+++|+|...+ +.+..=+..++...  ++...|..
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v-e~l~~~l~~l~~~~--~~~v~Dl~  164 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV-EFLNAFLAVLGVPH--DARVRDLL  164 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH-HHHHHHHHHTT-CE--EEEEE-TT
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH-HHHHHHHHhhCCCc--ceeEeeee
Confidence            6799999999999998765442 23799999999998 99999988888753  44444543

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=93.09  E-value=0.24  Score=44.78  Aligned_cols=83  Identities=17%  Similarity=0.110  Sum_probs=57.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      -|..+|=|+.+++.|.....    -.+.+||+++||||.-+...++. ..-.=.--|.+.... ..++..++..+..|..
T Consensus         4 spAaeRNk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~   78 (204)
T PF06080_consen    4 SPAAERNKDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVR   78 (204)
T ss_pred             ChhhhhCHhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccC
Confidence            35567777788888776421    12335999999999999887764 222344568988886 7888888888876644


Q ss_pred             EEEEcchhh
Q 022298          209 SIHTVRVET  217 (299)
Q Consensus       209 ~vi~~D~~~  217 (299)
                      .-+..|+.+
T Consensus        79 ~P~~lDv~~   87 (204)
T PF06080_consen   79 PPLALDVSA   87 (204)
T ss_pred             CCeEeecCC
Confidence            445556543

The function of this family is unknown.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.07  E-value=0.5  Score=43.85  Aligned_cols=116  Identities=18%  Similarity=0.230  Sum_probs=71.3

Q ss_pred             EEecCCCCCCCCCHHH--HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHH
Q 022298          120 KLLSPKGMDVRPMMEV--VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSN  193 (299)
Q Consensus       120 ~L~~p~~~~~RPttd~--Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~  193 (299)
                      ...+|++.-.-|-..|  -...+-+.|..-.+ ..+-.+.+.||+|  +|+--|.-+    ..|- +-++-|+|+.++ +
T Consensus        42 ~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g-~~~~~~i~~LDIG--vGAnCIYPliG~~eYgw-rfvGseid~~sl-~  116 (292)
T COG3129          42 YWDIPEGFLCPPVPGRADYIHHLADLLASTSG-QIPGKNIRILDIG--VGANCIYPLIGVHEYGW-RFVGSEIDSQSL-S  116 (292)
T ss_pred             EecCCCCCcCCCCCChhHHHHHHHHHHHhcCC-CCCcCceEEEeec--cCcccccccccceeecc-eeecCccCHHHH-H
Confidence            3678888653333322  33344455544211 1112456789995  555545433    2355 478999999998 9


Q ss_pred             HHHHHHHHh-CCCCcEEEEE-cchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          194 VLIPNLEWT-GFLDVSSIHT-VRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       194 ~a~~N~~~~-g~~~~~~vi~-~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .++.|+..| +++..+++.. .|-...+..   ....++.||...+||||..
T Consensus       117 sA~~ii~~N~~l~~~I~lr~qk~~~~if~g---iig~nE~yd~tlCNPPFh~  165 (292)
T COG3129         117 SAKAIISANPGLERAIRLRRQKDSDAIFNG---IIGKNERYDATLCNPPFHD  165 (292)
T ss_pred             HHHHHHHcCcchhhheeEEeccCccccccc---cccccceeeeEecCCCcch
Confidence            999999988 7776666654 332222211   1234679999999999975

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=93.03  E-value=0.88  Score=41.78  Aligned_cols=100  Identities=15%  Similarity=-0.003  Sum_probs=58.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      ..|-.+++..++++-+....    ..++.+||-|||.||+.---..- -| -..|++||.+++.. +.+- ++..-.  .
T Consensus        51 W~P~RSKLaAai~~Gl~~~~----ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~-~la~~R--~  122 (229)
T PF01269_consen   51 WNPFRSKLAAAILKGLENIP----IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLL-NLAKKR--P  122 (229)
T ss_dssp             E-TTT-HHHHHHHTT-S--S------TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHH-HHHHHS--T
T ss_pred             cCchhhHHHHHHHcCccccC----CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHH-HHhccC--C
Confidence            46777788888887765321    13588999999999976543322 13 33599999999987 4443 333322  2


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      ++-.+-.|+....+..    ..-+.+|+||.|=.
T Consensus       123 NIiPIl~DAr~P~~Y~----~lv~~VDvI~~DVa  152 (229)
T PF01269_consen  123 NIIPILEDARHPEKYR----MLVEMVDVIFQDVA  152 (229)
T ss_dssp             TEEEEES-TTSGGGGT----TTS--EEEEEEE-S
T ss_pred             ceeeeeccCCChHHhh----cccccccEEEecCC
Confidence            3666788987654321    12358999999975

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.88  E-value=0.56  Score=44.68  Aligned_cols=82  Identities=15%  Similarity=0.152  Sum_probs=59.9

Q ss_pred             CCCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH---HHHHhhhc
Q 022298          153 SLRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF---LERAEQFV  226 (299)
Q Consensus       153 ~~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~---l~~~~~~~  226 (299)
                      ++.+..||==|+|+|   .+++|++.||+ ++..+|+|.+.. +-..++++..|   ++..+.+|+.+.   .....+..
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~-~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk  109 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGN-EETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVK  109 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccch-HHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHH
Confidence            467999999999999   78899999999 689999999997 77777777666   356666665433   22222223


Q ss_pred             CCCCCeeEEEEcC
Q 022298          227 GKDGPFDYMSVTP  239 (299)
Q Consensus       227 ~~~~~fDlI~iDP  239 (299)
                      +.-+..|+++-|-
T Consensus       110 ~e~G~V~ILVNNA  122 (300)
T KOG1201|consen  110 KEVGDVDILVNNA  122 (300)
T ss_pred             HhcCCceEEEecc
Confidence            3346789888665

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=92.80  E-value=0.48  Score=41.24  Aligned_cols=74  Identities=18%  Similarity=0.161  Sum_probs=44.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|+-++|=|-...+..-.....+++..|.|.+=.  .       ++  +. .++.-|......-...   ..++||+
T Consensus        25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~--~-------~~--~~-~F~fyD~~~p~~~~~~---l~~~~d~   89 (162)
T PF10237_consen   25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE--Q-------FG--GD-EFVFYDYNEPEELPEE---LKGKFDV   89 (162)
T ss_pred             CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH--h-------cC--Cc-ceEECCCCChhhhhhh---cCCCceE
Confidence            4679999988887666654122345699999998743  2       12  11 1233343333221111   1468999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++||||-.
T Consensus        90 vv~DPPFl~   98 (162)
T PF10237_consen   90 VVIDPPFLS   98 (162)
T ss_pred             EEECCCCCC
Confidence            999999954

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=92.70  E-value=0.18  Score=47.22  Aligned_cols=36  Identities=28%  Similarity=0.230  Sum_probs=30.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHH
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV  191 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al  191 (299)
                      ...++||+|||-|.+...... -.++|++-|.|+.+.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr  129 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMR  129 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHH
Confidence            467899999999999987644 356799999999886

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=92.33  E-value=0.1  Score=48.34  Aligned_cols=45  Identities=11%  Similarity=0.208  Sum_probs=37.8

Q ss_pred             EEEEECCccchHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHHhC
Q 022298          158 RWLDLYSGTGSVGIEAISRGC---SEVHFVEMDPWVVSNVLIPNLEWTG  203 (299)
Q Consensus       158 ~VLDLfaGSGalgIEAlSrGa---~~V~~VD~n~~Al~~~a~~N~~~~g  203 (299)
                      ++|++|||.|......+.--.   -.|+++|-++.|+ +..++|.....
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-~~vk~~~~~~e  121 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-ELVKKSSGYDE  121 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-HHHHhccccch
Confidence            799999999999988876432   3799999999998 99999976553

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=92.32  E-value=1.1  Score=43.12  Aligned_cols=90  Identities=17%  Similarity=0.097  Sum_probs=56.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchH---HHHHHHc-C-CCEEEEEeCCHHHHHHHHHHH
Q 022298          124 PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV---GIEAISR-G-CSEVHFVEMDPWVVSNVLIPN  198 (299)
Q Consensus       124 p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGal---gIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N  198 (299)
                      |.=+-+|-..+.+++..-++....      -.+..++|||||+|.=   -++++.+ + ...-+.||+|..++ +.+..+
T Consensus        51 pEYYptr~E~~iL~~~~~~Ia~~i------~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L-~~a~~~  123 (319)
T TIGR03439        51 PEYYLTNDEIEILKKHSSDIAASI------PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSEL-QRTLAE  123 (319)
T ss_pred             CccCChHHHHHHHHHHHHHHHHhc------CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHh
Confidence            443334555555666555555542      2466899999999964   3344432 1 23589999999998 888888


Q ss_pred             HHHhCCCC-cEEEEEcchhhHHH
Q 022298          199 LEWTGFLD-VSSIHTVRVETFLE  220 (299)
Q Consensus       199 ~~~~g~~~-~~~vi~~D~~~~l~  220 (299)
                      +..-.+.. .+.-+.+|..+.+.
T Consensus       124 L~~~~~p~l~v~~l~gdy~~~l~  146 (319)
T TIGR03439       124 LPLGNFSHVRCAGLLGTYDDGLA  146 (319)
T ss_pred             hhhccCCCeEEEEEEecHHHHHh
Confidence            87333332 13336777766543

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=91.70  E-value=0.95  Score=41.66  Aligned_cols=91  Identities=22%  Similarity=0.162  Sum_probs=66.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~  209 (299)
                      +|-+.+..++++            ..+.+||.+|-|.|.+.-..-.+...+=+.||-+|..+ +.++.+.=  .-.+++.
T Consensus        88 tpiMha~A~ai~------------tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw--~ek~nVi  152 (271)
T KOG1709|consen   88 TPIMHALAEAIS------------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGW--REKENVI  152 (271)
T ss_pred             hHHHHHHHHHHh------------hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhccc--ccccceE
Confidence            666666666664            25889999999999887644445555668889999997 77777642  2234577


Q ss_pred             EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                      ++.+...+.+..+     ..+.||=|+-|- |
T Consensus       153 il~g~WeDvl~~L-----~d~~FDGI~yDT-y  178 (271)
T KOG1709|consen  153 ILEGRWEDVLNTL-----PDKHFDGIYYDT-Y  178 (271)
T ss_pred             EEecchHhhhccc-----cccCcceeEeec-h
Confidence            8888888877654     256799999997 5

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=90.13  E-value=0.23  Score=46.91  Aligned_cols=38  Identities=32%  Similarity=0.462  Sum_probs=34.6

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV  191 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al  191 (299)
                      ..+++|||||||+|--++.+...|+..+.+.|.|.+.+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL  152 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence            46899999999999999999888988899999998865

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=89.99  E-value=3.9  Score=37.35  Aligned_cols=76  Identities=17%  Similarity=0.194  Sum_probs=53.9

Q ss_pred             CCCEEEEECCccc----hHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc-hhhHHHHHhhhcC
Q 022298          155 RPGRWLDLYSGTG----SVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSG----algIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D-~~~~l~~~~~~~~  227 (299)
                      ....+++.+|+-|    ++|+.++++  |. ++++|--+.+.. ...++.+...+..+..+++.++ ..+.+..+     
T Consensus        41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~-~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-----  113 (218)
T PF07279_consen   41 NAKLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSL-SEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-----  113 (218)
T ss_pred             cceEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhH-HHHHHHHhhccccccceEEecCCHHHHHhhc-----
Confidence            4567888866533    677776665  44 588888888876 6788888878887767888887 45566443     


Q ss_pred             CCCCeeEEEEcC
Q 022298          228 KDGPFDYMSVTP  239 (299)
Q Consensus       228 ~~~~fDlI~iDP  239 (299)
                        ...|++++|=
T Consensus       114 --~~iDF~vVDc  123 (218)
T PF07279_consen  114 --KGIDFVVVDC  123 (218)
T ss_pred             --cCCCEEEEeC
Confidence              4678888775

The function of this family is unknown.

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=89.63  E-value=0.75  Score=47.12  Aligned_cols=79  Identities=16%  Similarity=0.163  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhcCC-CCCCCCCCEEEEECCccchHHHHHH------HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298          137 KGAAFDILQSAGG-CPASLRPGRWLDLYSGTGSVGIEAI------SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (299)
Q Consensus       137 realfn~L~~~~~-~~~~~~~~~VLDLfaGSGalgIEAl------SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~  209 (299)
                      -+|++..|..+.. .+. ....+++=+|||-|-++-..+      .|.. ++++||+||.|+  ...+|.+.-..+++++
T Consensus       349 q~Ai~~AL~Drvpd~~a-~~~tVimvlGaGRGPLv~~~lkaa~~~~RkV-klyavEKNPNAi--vtL~~~n~~~W~~~Vt  424 (649)
T KOG0822|consen  349 QQAILKALLDRVPDESA-KTTTVIMVLGAGRGPLVDASLKAAEETDRKV-KLYAVEKNPNAI--VTLQNRNFECWDNRVT  424 (649)
T ss_pred             HHHHHHHHHhhCccccc-CceEEEEEecCCCccHHHHHHHHHHHhcCce-EEEEEecCcchh--hhhhhhchhhhcCeeE
Confidence            3566666655421 000 113467889999998875443      2433 699999999998  4455665556678899


Q ss_pred             EEEcchhhHH
Q 022298          210 IHTVRVETFL  219 (299)
Q Consensus       210 vi~~D~~~~l  219 (299)
                      ++.+|+.+|-
T Consensus       425 ii~~DMR~w~  434 (649)
T KOG0822|consen  425 IISSDMRKWN  434 (649)
T ss_pred             EEeccccccC
Confidence            9999998875

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=87.88  E-value=1.1  Score=38.20  Aligned_cols=49  Identities=8%  Similarity=-0.035  Sum_probs=35.6

Q ss_pred             EEEeCCHHHHHHHHHHHHHHh--CCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          182 HFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       182 ~~VD~n~~Al~~~a~~N~~~~--g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      +++|.++.++ +.++++.+..  +..++++++++|+.+..       ...+.||+|++.
T Consensus         1 ~GvD~S~~ML-~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-------~~~~~fD~v~~~   51 (160)
T PLN02232          1 MGLDFSSEQL-AVAATRQSLKARSCYKCIEWIEGDAIDLP-------FDDCEFDAVTMG   51 (160)
T ss_pred             CeEcCCHHHH-HHHHHhhhcccccCCCceEEEEechhhCC-------CCCCCeeEEEec
Confidence            4799999998 9998766532  22345889999987642       234689999974

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=87.53  E-value=3.2  Score=37.85  Aligned_cols=100  Identities=13%  Similarity=-0.011  Sum_probs=65.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      ..|--+++..++++-|....    ..++.+||=|||-||+-.-...- -|...+++||.+++...+++ .=++.   .++
T Consensus        54 Wnp~RSKLaAaIl~Gl~~~p----i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~---R~N  125 (231)
T COG1889          54 WNPRRSKLAAAILKGLKNFP----IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEK---RPN  125 (231)
T ss_pred             eCcchhHHHHHHHcCcccCC----cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHh---CCC
Confidence            57888888888888876431    13689999999999976543322 24445999999999873333 22222   233


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      +-.+-+|+....+...    --+..|+||.|=-
T Consensus       126 i~PIL~DA~~P~~Y~~----~Ve~VDviy~DVA  154 (231)
T COG1889         126 IIPILEDARKPEKYRH----LVEKVDVIYQDVA  154 (231)
T ss_pred             ceeeecccCCcHHhhh----hcccccEEEEecC
Confidence            5567788876543321    1257999999863

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=87.53  E-value=3  Score=31.37  Aligned_cols=74  Identities=20%  Similarity=0.130  Sum_probs=41.7

Q ss_pred             EEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH-HHHHhhhcCCC-CCeeE
Q 022298          159 WLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGKD-GPFDY  234 (299)
Q Consensus       159 VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~-l~~~~~~~~~~-~~fDl  234 (299)
                      ++|++||+|... .+.....  ..++++|.++.++ ...+.+... .....+.+...|.... +.      ... ..||+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~d~  122 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEML-ALARARAEG-AGLGLVDFVVADALGGVLP------FEDSASFDL  122 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHH-HHHHhhhhh-cCCCceEEEEeccccCCCC------CCCCCceeE
Confidence            999999999865 2222221  3689999999987 664443322 1111145566665431 11      112 36888


Q ss_pred             EEEcCCC
Q 022298          235 MSVTPPY  241 (299)
Q Consensus       235 I~iDPPY  241 (299)
                      +......
T Consensus       123 ~~~~~~~  129 (257)
T COG0500         123 VISLLVL  129 (257)
T ss_pred             Eeeeeeh
Confidence            7554443

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=87.49  E-value=0.45  Score=48.06  Aligned_cols=81  Identities=21%  Similarity=0.173  Sum_probs=58.6

Q ss_pred             CCEEEEECCccchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEA-lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      +...|-++=|+|.++.-. .+++-.++++||++|.++ +.+..+.....-. +..++..|..+++.+..+.......||+
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l-~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEML-EVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHh-hccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence            566777777778777532 356767899999999998 9999987655432 4566778888888766433234568999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      ++.|
T Consensus       374 l~~d  377 (482)
T KOG2352|consen  374 LMVD  377 (482)
T ss_pred             EEEE
Confidence            9977

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.23  E-value=0.79  Score=40.40  Aligned_cols=80  Identities=16%  Similarity=0.079  Sum_probs=45.1

Q ss_pred             CCCCEEEEECCccchHH-HHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVG-IEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalg-IEA-lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      +.+.++|+||+|--+++ +.. .+.....|+.-|-|.+++ +..++-...|....   +-.+.+.++...-.+.......
T Consensus        28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-rnv~ki~~~n~~s~---~tsc~vlrw~~~~aqsq~eq~t  103 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-RNVEKIRNSNMASS---LTSCCVLRWLIWGAQSQQEQHT  103 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-HHHHHHHhcccccc---cceehhhHHHHhhhHHHHhhCc
Confidence            45789999998854443 332 233456799999999998 77766554442211   1122233333221122223458


Q ss_pred             eeEEEE
Q 022298          232 FDYMSV  237 (299)
Q Consensus       232 fDlI~i  237 (299)
                      ||+|++
T Consensus       104 FDiIla  109 (201)
T KOG3201|consen  104 FDIILA  109 (201)
T ss_pred             ccEEEe
Confidence            998874

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.29  E-value=3.9  Score=39.67  Aligned_cols=46  Identities=17%  Similarity=0.148  Sum_probs=34.8

Q ss_pred             CCCEEEEECCcc-chHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 022298          155 RPGRWLDLYSGT-GSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (299)
Q Consensus       155 ~~~~VLDLfaGS-GalgIEAl-SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~  205 (299)
                      .+.+||=+|||. |-+.+-++ ..||.+|+++|.++..+ +.+++    +|..
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~----~Ga~  216 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKK----FGAT  216 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHH----hCCe
Confidence            588999998875 33333333 36999999999999998 88877    6764

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=85.09  E-value=2.5  Score=35.98  Aligned_cols=59  Identities=19%  Similarity=0.145  Sum_probs=41.1

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       180 ~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      +|+++|+.++|+ +.+++.++..+..++++++..+=..+....    . .+++|+++.|-=|--+
T Consensus         1 kVyaFDIQ~~Ai-~~T~~rL~~~~~~~~v~li~~sHe~l~~~i----~-~~~v~~~iFNLGYLPg   59 (140)
T PF06962_consen    1 KVYAFDIQEEAI-ENTRERLEEAGLEDRVTLILDSHENLDEYI----P-EGPVDAAIFNLGYLPG   59 (140)
T ss_dssp             EEEEEES-HHHH-HHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CT
T ss_pred             CEEEEECHHHHH-HHHHHHHHhcCCCCcEEEEECCHHHHHhhC----c-cCCcCEEEEECCcCCC
Confidence            599999999998 999999999998888998886544433211    1 2489999999877643

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=84.92  E-value=1.4  Score=41.00  Aligned_cols=46  Identities=35%  Similarity=0.236  Sum_probs=33.7

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g  203 (299)
                      ..++|+||+|||-.|+.|+..+...|+.-|.-. .+ ..++.|.+.++
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~-~~L~~~~~~~~  132 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VV-ENLKFNRDKNN  132 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hH-HHHHHhhhhhh
Confidence            457999999999999987775444677767644 44 67777766554

>TIGR00571 dam DNA adenine methylase (dam)

Probab=84.84  E-value=0.85  Score=42.41  Aligned_cols=28  Identities=18%  Similarity=0.325  Sum_probs=20.1

Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      +++.+.|..+.+...       ..=|+||+||||.
T Consensus       156 v~i~~~Df~~~i~~~-------~~~dfvYlDPPY~  183 (266)
T TIGR00571       156 TTFLCGSFEKILAMV-------DDDSFVYCDPPYL  183 (266)
T ss_pred             CEEEECCHHHHHhhc-------CCCCEEEECCCCC
Confidence            567777877776432       3447999999995

All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=82.92  E-value=2.8  Score=34.54  Aligned_cols=51  Identities=24%  Similarity=0.212  Sum_probs=31.1

Q ss_pred             EECCccc--hHHHHHH-H-cC-CCEEEEEeCCHHHHHHHHHHH--HHHhCCCCcEEEEE
Q 022298          161 DLYSGTG--SVGIEAI-S-RG-CSEVHFVEMDPWVVSNVLIPN--LEWTGFLDVSSIHT  212 (299)
Q Consensus       161 DLfaGSG--algIEAl-S-rG-a~~V~~VD~n~~Al~~~a~~N--~~~~g~~~~~~vi~  212 (299)
                      |+||+.|  +..+..+ + .+ ..+|+++|-++..+ +.+++|  +..++..+.++++.
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~-~~l~~~~~~~l~~~~~~~~~~~   58 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF-EKLKRNLNLALNDKDGEVEFHP   58 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH-HHHHHH--HHHTTTSTTGGEEE
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH-HHHhHHHHHHhcCCCceEEEEE
Confidence            8999999  6555543 2 22 45799999999997 999999  66664433344443

; PDB: 2PY6_A.

>PRK10904 DNA adenine methylase; Provisional

Probab=82.35  E-value=1.3  Score=41.45  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=21.8

Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      +++.+.|..+.+...       ..=|+|++||||.
T Consensus       158 v~i~~~Df~~~i~~~-------~~~~fvYlDPPY~  185 (271)
T PRK10904        158 AFFYCESYADSMARA-------DKGSVVYCDPPYA  185 (271)
T ss_pred             CEEEECCHHHHHhhc-------CCCcEEEECCCCC
Confidence            678899988887542       3458999999995

>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=80.71  E-value=1.1  Score=42.25  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=28.9

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPW  189 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~  189 (299)
                      ..++.|.|+|+|||.+|-++-..|. .|++-|+-.-
T Consensus        26 ~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDle~y   60 (330)
T COG3392          26 LSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDLEYY   60 (330)
T ss_pred             cCCCeeeeeccCccHHHHHHHHhcc-hhhhchHHHH
Confidence            4678999999999999999888876 4888887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	299
1ws6_A	171	The Structure Of Thermus Thermphillus Hb8 Hypotheti		5e-06
2fpo_A	202	Putative Methyltransferase Yhhf From Escherichia Co		6e-06
3p9n_A	189	Rv2966c Of M. Tuberculosis Is A Rsmd-Like Methyltra		7e-06
2fhp_A	187	Crystal Structure Of Putative Methylase From Entero		9e-06
2ift_A	201	Crystal Structure Of Putative Methylase Hi0767 From		3e-04
2esr_A	177	Conserved Hypothetical Protein- Streptococcus Pyoge		4e-04

>pdb|1WS6|A Chain A, The Structure Of Thermus Thermphillus Hb8 Hypothetical Protein Ttha0928 Length = 171

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
           ++++LGGKAR   L  P     RP    ++ A FD L+     P   R GR+LD ++G+G
Sbjct: 1   VVRILGGKARGVALKVPA--SARPSPVRLRKALFDYLRLR--YP---RRGRFLDPFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
           +VG+EA S G   V  VE DP  V  +L  N+  TG    + +  + VE FL  A+    
Sbjct: 54  AVGLEAASEGWEAV-LVEKDPEAV-RLLKENVRRTGL--GARVVALPVEVFLPEAK---A 106
Query: 228 KDGPFDYMSVTPPYT 242
           +   F      PPY 
Sbjct: 107 QGERFTVAFXAPPYA 121

>pdb|2FPO|A Chain A, Putative Methyltransferase Yhhf From Escherichia Coli. Length = 202

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P    +RP  + V+   F+ L         +   + LD ++G+G+
Sbjct: 14  IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 67
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
           +G+EA+SR  +    +E D   VS  LI NL        +++           A  F+ +
Sbjct: 68  LGLEALSRYAAGATLIEXDR-AVSQQLIKNL--------ATLKAGNARVVNSNAXSFLAQ 118
Query: 229 DG-PFDYMSVTPPY 241
            G P + + V PP+
Sbjct: 119 KGTPHNIVFVDPPF 132

>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like Methyltransferase Length = 189

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 108 LLQVLGGKAR-RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
           + +++GG A  R+  + P+G   RP  + V+ + F+I+ +       L     LDLY+G+
Sbjct: 2   MTRIIGGVAGGRRIAVPPRG--TRPTTDRVRESLFNIVTAR----RDLTGLAVLDLYAGS 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
           G++G+EA+SRG + V FVE D    + V+  N+E  G     S  T+R       A    
Sbjct: 56  GALGLEALSRGAASVLFVESDQRSAA-VIARNIEALGL----SGATLR--RGAVAAVVAA 108
Query: 227 GKDGPFDYMSVTPPYT--AVDYEVVEYPLRTD 256
           G   P D +   PPY   + D + +   L T+
Sbjct: 109 GTTSPVDLVLADPPYNVDSADVDAILAALGTN 140

>pdb|2FHP|A Chain A, Crystal Structure Of Putative Methylase From Enterococcus Faecalis Length = 187

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
           +V+ G+   ++L +  G + RP  + VK + F+ +            G  LDLYSG+G +
Sbjct: 5   RVISGEYGGRRLKALDGDNTRPTTDKVKESIFNXI------GPYFDGGXALDLYSGSGGL 58
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229
            IEA+SRG  +   +E + +    V+  N+  T   +   +        L   EQF  + 
Sbjct: 59  AIEAVSRGXDKSICIEKN-FAALKVIKENIAITKEPEKFEVRKXDANRAL---EQFYEEK 114
Query: 230 GPFDYMSVTPPYTAVDY-----EVVEYPLRTD-------------MLDTCGCLVKIKDRR 271
             FD + + PPY   +      + +E  L T+             + +T G L K ++  
Sbjct: 115 LQFDLVLLDPPYAKQEIVSQLEKXLERQLLTNEAVIVCETDKTVKLPETIGTLKKTRETV 174
Query: 272 FGRTHLAIY 280
           +G T + IY
Sbjct: 175 YGITQVTIY 183

>pdb|2IFT|A Chain A, Crystal Structure Of Putative Methylase Hi0767 From Haemophilus Influenzae. Nesg Target Ir102. Length = 201

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++ G  R +KL       +RP  + VK   F+ L         +     LD ++G+GS
Sbjct: 13  VRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLX------PYIHQSECLDGFAGSGS 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
           +G EA+SR   +V F+E+D   V+N L  NL+
Sbjct: 67  LGFEALSRQAKKVTFLELDK-TVANQLKKNLQ 97

>pdb|2ESR|A Chain A, Conserved Hypothetical Protein- Streptococcus Pyogenes Length = 177

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 21/120 (17%)
Query: 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVE 185
           G   RP  + V+GA F+ +            GR LDL++G+G + IEA+SRG S    VE
Sbjct: 8   GKITRPTSDKVRGAIFNXIGP------YFNGGRVLDLFAGSGGLAIEAVSRGXSAAVLVE 61
Query: 186 MD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY 241
            +      +  N++    E       +    ++ E   ERA   +   G FD + + PPY
Sbjct: 62  KNRKAQAIIQDNIIXTKAE-------NRFTLLKXEA--ERAIDCL--TGRFDLVFLDPPY 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	4e-36
2esr_A	177	Methyltransferase; structural genomics, hypothetic	1e-32
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	5e-31
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	2e-30
1ws6_A	171	Methyltransferase; structural genomics, riken stru	5e-28
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	1e-26
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	2e-09
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3lpm_A	259	Putative methyltransferase; structural genomics, p	5e-04

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187

 Score =  127 bits (321), Expect = 4e-36
 Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 28/188 (14%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           V+ G+   ++L +  G + RP  + VK + F+++            G  LDLYSG+G + 
Sbjct: 6   VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGP------YFDGGMALDLYSGSGGLA 59

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
           IEA+SRG  +   +E +   +  V+  N+  T   +   +  +     LE+  +   +  
Sbjct: 60  IEAVSRGMDKSICIEKNFAAL-KVIKENIAITKEPEKFEVRKMDANRALEQFYE---EKL 115

Query: 231 PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRF 272
            FD + + PPY   +                    V E      + +T G L K ++  +
Sbjct: 116 QFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLPETIGTLKKTRETVY 175

Query: 273 GRTHLAIY 280
           G T + IY
Sbjct: 176 GITQVTIY 183

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Length = 177

 Score =  117 bits (296), Expect = 1e-32
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 38/192 (19%)

Query: 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS 179
            L +  G   RP  + V+GA F+++            GR LDL++G+G + IEA+SRG S
Sbjct: 2   SLKTLDGKITRPTSDKVRGAIFNMIGP------YFNGGRVLDLFAGSGGLAIEAVSRGMS 55

Query: 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239
               VE +      ++  N+  T   +  ++  +  E  ++           FD + + P
Sbjct: 56  AAVLVEKNR-KAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG------RFDLVFLDP 108

Query: 240 PYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 281
           PY                        V E      +      L   K++ +G + + +Y 
Sbjct: 109 PYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLLPKEIATLGIWKEKIYGISKVTVY- 167

Query: 282 PDWAQKKRKSEK 293
                   +   
Sbjct: 168 ------VNEGHH 173

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 Length = 202

 Score =  114 bits (287), Expect = 5e-31
 Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 32/188 (17%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           ++GG+ R +KL  P    +RP  + V+   F+ L         +   + LD ++G+G++G
Sbjct: 16  IIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGALG 69

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
           +EA+SR  +    +EMD  V    LI NL        + +      +FL +         
Sbjct: 70  LEALSRYAAGATLIEMDRAVSQ-QLIKNLATLK-AGNARVVNSNAMSFLAQKGT------ 121

Query: 231 PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRF 272
           P + + V PP+     E                   VE  +   +          +++  
Sbjct: 122 PHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVA 181

Query: 273 GRTHLAIY 280
           G+    +Y
Sbjct: 182 GQVAYRLY 189

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Length = 189

 Score =  112 bits (282), Expect = 2e-30
 Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 32/190 (16%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           ++GG A  +++  P     RP  + V+ + F+I+ +       L     LDLY+G+G++G
Sbjct: 5   IIGGVAGGRRIAVP-PRGTRPTTDRVRESLFNIVTARR----DLTGLAVLDLYAGSGALG 59

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
           +EA+SRG + V FVE D    + V+  N+E  G L  +++    V   +       G   
Sbjct: 60  LEALSRGAASVLFVESDQRSAA-VIARNIEALG-LSGATLRRGAVAAVVAA-----GTTS 112

Query: 231 PFDYMSVTPPYTAVDYE--------------------VVEYPLRTDMLDTCGCLVKIKDR 270
           P D +   PPY     +                    VVE       L       +   R
Sbjct: 113 PVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTCAPLTWPEGWRRWPQR 172

Query: 271 RFGRTHLAIY 280
            +G T L + 
Sbjct: 173 VYGDTRLELA 182

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 Length = 171

 Score =  105 bits (264), Expect = 5e-28
 Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 24/180 (13%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           +LGGKAR   L  P     RP    ++ A FD L+         R GR+LD ++G+G+VG
Sbjct: 4   ILGGKARGVALKVPAS--ARPSPVRLRKALFDYLRLRY-----PRRGRFLDPFAGSGAVG 56

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
           +EA S G   V  VE DP  V  +L  N+  TG      +  + VE FL  A+    +  
Sbjct: 57  LEAASEGWEAV-LVEKDPEAVR-LLKENVRRTGLGA--RVVALPVEVFLPEAK---AQGE 109

Query: 231 PFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLV----------KIKDRRFGRTHLAIY 280
            F    + PPY      +    L + +++  G  V            + R +G   L + 
Sbjct: 110 RFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYLPLGERRVYGENALTLV 169

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Length = 201

 Score =  102 bits (257), Expect = 1e-26
 Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 29/188 (15%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           ++ G  R +KL       +RP  + VK   F+ L         +     LD ++G+GS+G
Sbjct: 15  IIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMP------YIHQSECLDGFAGSGSLG 68

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
            EA+SR   +V F+E+D  V +  L  NL+            +   +      +      
Sbjct: 69  FEALSRQAKKVTFLELDKTVAN-QLKKNLQTLK-CSSEQAEVINQSSL--DFLKQPQNQP 124

Query: 231 PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRF 272
            FD + + PP+     E                   VE       L T      +K++  
Sbjct: 125 HFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDKP-LITPENWTLLKEKTT 183

Query: 273 GRTHLAIY 280
           G     +Y
Sbjct: 184 GIVSYRLY 191

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 55.5 bits (133), Expect = 2e-09
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 18/133 (13%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           L +   K +  K         R          +            +      DL +GTG 
Sbjct: 8   LAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYSLG-----DIEGKVVADLGAGTGV 62

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
           +   A+  G  EV  VE+D   V +VLI NL              + + F+    +F   
Sbjct: 63  LSYGALLLGAKEVICVEVDKEAV-DVLIENLG---------EFKGKFKVFIGDVSEF--- 109

Query: 229 DGPFDYMSVTPPY 241
           +   D + + PP+
Sbjct: 110 NSRVDIVIMNPPF 122

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217
           R LD+++ TG   I A   G  EV  ++  P  +      N +  G  D   +  +    
Sbjct: 220 RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIE-TAKENAKLNGVED--RMKFIVGSA 276

Query: 218 FLERAEQFVGKDGPFDYMSVTPP 240
           F E  E+   K   FD + + PP
Sbjct: 277 F-EEMEKLQKKGEKFDIVVLDPP 298

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 42/277 (15%), Positives = 85/277 (30%), Gaps = 90/277 (32%)

Query: 25  LPLFSTSFTKPISQKR---YPLIVFS-------YKSGTGLTS--------EDK-KELLKR 65
           L +F  +F      K     P  + S         S   ++           K +E++++
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 66  Y---GLDPD-EFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKL 121
           +    L  + +FL  P      + E R   ++      Q +R  +   QV          
Sbjct: 82  FVEEVLRINYKFLMSPI-----KTEQRQPSMMTRMYIEQRDRL-YNDNQVF--------- 126

Query: 122 LSPKGMDV-RP-MMEVVKGAAFDILQSAGGCPASLRPGRWLDLY--SGTG-SV-GIEAIS 175
              K  +V R      ++ A    L         LRP + + +    G+G +   ++   
Sbjct: 127 --AK-YNVSRLQPYLKLRQA----LLE-------LRPAKNVLIDGVLGSGKTWVALDV-- 170

Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235
             C          + +         W   L++ + ++   ET LE  ++           
Sbjct: 171 --CLSYKVQCKMDFKIF--------W---LNLKNCNS--PETVLEMLQKL--------LY 207

Query: 236 SVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRF 272
            + P +T+         LR   +       + + RR 
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSI-------QAELRRL 237

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 27/118 (22%)

Query: 141 FDILQSAGG-------------CPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187
             I+QS                    +R G+ +DL SG G + +   +R  +++  VE+ 
Sbjct: 22  LRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQ 81

Query: 188 PWVVS----NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY 241
             +      +V    LE            + +  +  +    +      D ++  PPY
Sbjct: 82  ERLADMAKRSVAYNQLE----------DQIEIIEYDLKKITDLIPKERADIVTCNPPY 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.95
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.93
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.93
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.92
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.86
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.85
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.61
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.59
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.58
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.57
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.56
2oo3_A	283	Protein involved in catabolism of external DNA; st	99.56
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.51
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.5
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.48
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.47
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.47
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.47
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.47
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.46
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.46
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.46
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.45
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.45
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.44
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.43
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.43
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.42
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.42
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.41
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.41
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.4
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.4
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.4
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.38
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.37
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.37
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.37
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.36
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.35
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.34
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.33
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.33
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.32
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.29
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.29
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.29
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.28
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.28
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.28
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.28
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.27
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.26
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.26
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.25
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.24
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.21
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.21
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.21
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.2
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.2
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.19
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.19
2o07_A	304	Spermidine synthase; structural genomics, structur	99.19
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.19
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.18
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.17
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.17
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.16
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.16
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.15
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.15
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.15
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.15
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.14
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.14
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.13
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.13
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.12
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.11
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.11
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.11
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.1
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.1
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.09
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.08
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.08
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.07
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.07
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.07
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.06
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.06
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.06
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.05
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.05
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.05
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.05
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.05
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.04
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.04
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.04
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.03
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.03
3lkd_A	542	Type I restriction-modification system methyltrans	99.02
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.02
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.02
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.01
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.01
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.0
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.99
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.99
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.99
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.99
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.98
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.98
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.98
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.97
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.97
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.97
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.96
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.96
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.96
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.94
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.94
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.93
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.92
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.92
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.92
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.91
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.91
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.9
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.9
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.9
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.9
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.9
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.89
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.89
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.89
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.89
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.88
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.88
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.88
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.87
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.87
3khk_A	544	Type I restriction-modification system methylation	98.86
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.86
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.85
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.85
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.85
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.85
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.85
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.85
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.84
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.83
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.83
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.83
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.81
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.79
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.78
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.77
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.77
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.77
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.76
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.76
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.75
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.75
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.75
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.74
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.74
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.74
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.73
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.73
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.72
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.72
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.72
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.72
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.71
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.71
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.71
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.71
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.71
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.7
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.7
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.7
3ocj_A	305	Putative exported protein; structural genomics, PS	98.69
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.68
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.68
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.68
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.67
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.66
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.66
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.65
3ufb_A	530	Type I restriction-modification system methyltran	98.65
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.65
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.65
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.65
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.64
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.63
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.63
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.62
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.62
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.61
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.61
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.6
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.6
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.6
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.58
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.57
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.57
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.56
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.56
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.55
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.55
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.55
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.54
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.54
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.54
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.52
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.52
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.51
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.51
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.51
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.5
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.5
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.49
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.48
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.48
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.46
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.46
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.46
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.46
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.45
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.43
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.41
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.41
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.4
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.4
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.39
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.39
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.38
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.37
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.37
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.36
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.36
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.35
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.35
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.34
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.34
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.3
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.28
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.25
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.24
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.21
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.19
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.16
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.16
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.16
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.15
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.15
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.14
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.14
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.12
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.1
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.09
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.08
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.07
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	98.05
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.05
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.98
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.97
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.95
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.94
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	97.91
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.91
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.88
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.82
3me5_A	482	Cytosine-specific methyltransferase; structural ge	97.8
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.79
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	97.78
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.77
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.76
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.68
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.64
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.56
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.55
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.47
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.47
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.38
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.31
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.28
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.22
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.21
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.15
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.12
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.11
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.07
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.83
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	96.79
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	96.79
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	96.73
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	96.66
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	96.63
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	96.6
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	96.5
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.28
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.16
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	96.14
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.43
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	95.14
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.77
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	94.65
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.42
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.99
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	92.07
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	91.71
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	91.67
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	89.94
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	88.97
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	88.22
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	86.63
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	86.14
2g1p_A	278	DNA adenine methylase; DAM methylation, GATC recog	85.09
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	84.51
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	84.4
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	84.16
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	83.54
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	83.4
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	82.91
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	82.29
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	82.29
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	82.23
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	81.66
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	81.56
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	81.55
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	81.43
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	81.37
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	81.29
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	80.75
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	80.72
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	80.71
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	80.38
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	80.09

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.95  E-value=2.1e-27  Score=204.37  Aligned_cols=167  Identities=28%  Similarity=0.453  Sum_probs=140.8

Q ss_pred             ceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeC
Q 022298          107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM  186 (299)
Q Consensus       107 ~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~  186 (299)
                      +||||++|+|+|+++..|. ..+||+++.+++.+++++.....    .++.+|||+|||+|.++++++++|+.+|+++|+
T Consensus         1 ~m~rii~g~~~g~~l~~~~-~~~rp~~~~~~~~l~~~l~~~~~----~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~   75 (189)
T 3p9n_A            1 SMTRIIGGVAGGRRIAVPP-RGTRPTTDRVRESLFNIVTARRD----LTGLAVLDLYAGSGALGLEALSRGAASVLFVES   75 (189)
T ss_dssp             CEEECCSSTTTTCEEECCS-CCC---CHHHHHHHHHHHHHHSC----CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEEC
T ss_pred             CceEEEeeccCCcEecCCC-CCCccCcHHHHHHHHHHHHhccC----CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEEC
Confidence            4899999999999999998 67899999999999999976421    368899999999999999999999889999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC--C------------------e
Q 022298          187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV--D------------------Y  246 (299)
Q Consensus       187 n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~--~------------------~  246 (299)
                      |+.++ +.+++|++.+++ ++++++++|+.++....     ..++||+|++||||...  .                  .
T Consensus        76 ~~~~~-~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-----~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~  148 (189)
T 3p9n_A           76 DQRSA-AVIARNIEALGL-SGATLRRGAVAAVVAAG-----TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTV  148 (189)
T ss_dssp             CHHHH-HHHHHHHHHHTC-SCEEEEESCHHHHHHHC-----CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCE
T ss_pred             CHHHH-HHHHHHHHHcCC-CceEEEEccHHHHHhhc-----cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeE
Confidence            99998 999999999998 56999999999886432     24789999999999863  1                  1


Q ss_pred             EEEEecCCCCCCCCCCCeEEEEEeeecceEEEEeecchh
Q 022298          247 EVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA  285 (299)
Q Consensus       247 ~~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~~~~~  285 (299)
                      .++|+.....++....+|...++|+||.+.++||++.++
T Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~  187 (189)
T 3p9n_A          149 AVVERATTCAPLTWPEGWRRWPQRVYGDTRLELAERLFA  187 (189)
T ss_dssp             EEEEEETTSCCCCCCTTEEECCCEEETTEEEEEEEEC--
T ss_pred             EEEEecCCCCCccCCCceEEEEEcccCcEEEEEeccccc
Confidence            248888877777777789999999999999999998763

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.93  E-value=2e-25  Score=195.52  Aligned_cols=165  Identities=24%  Similarity=0.385  Sum_probs=133.9

Q ss_pred             ceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeC
Q 022298          107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM  186 (299)
Q Consensus       107 ~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~  186 (299)
                      +.|||++|+|+|+.+..|++..+||+++.+++.+++++...      ..+.+|||+|||+|.++++++++|+.+|++||+
T Consensus        12 ~~~~ii~g~~~g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~------~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~   85 (202)
T 2fpo_A           12 GQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGALGLEALSRYAAGATLIEM   85 (202)
T ss_dssp             CEEECCSGGGTTCEEECCCC------CHHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECS
T ss_pred             ceEEEEEEEEcCcEecCCCCCCCCCCHHHHHHHHHHHHHhh------cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEEC
Confidence            46899999999999999998889999999999999998752      257899999999999999999999889999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCe------------------EE
Q 022298          187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY------------------EV  248 (299)
Q Consensus       187 n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~------------------~~  248 (299)
                      |+.++ +.+++|++.+++ ++++++++|+.+++..      ..++||+|++||||.....                  .+
T Consensus        86 s~~~l-~~a~~~~~~~~~-~~v~~~~~D~~~~~~~------~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~  157 (202)
T 2fpo_A           86 DRAVS-QQLIKNLATLKA-GNARVVNSNAMSFLAQ------KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIY  157 (202)
T ss_dssp             CHHHH-HHHHHHHHHTTC-CSEEEECSCHHHHHSS------CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CHHHH-HHHHHHHHHcCC-CcEEEEECCHHHHHhh------cCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEE
Confidence            99998 999999999988 5689999999886521      2468999999999875321                  12


Q ss_pred             EEecCCCCCCCCCCCeEEEEEeeecceEEEEeecchh
Q 022298          249 VEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA  285 (299)
Q Consensus       249 vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~~~~~  285 (299)
                      +++.....++....+|.+.++++||.+.+.||+...+
T Consensus       158 i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  194 (202)
T 2fpo_A          158 VESEVENGLPTVPANWSLHREKVAGQVAYRLYQREAQ  194 (202)
T ss_dssp             EEEEGGGCSCCCCTTEEEEEEEEETTEEEEEEEECCC
T ss_pred             EEECCCccccccCCcceEEeeeccCCEEEEEEEECCC
Confidence            6766655555556789999999999999999986443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.93  E-value=2.7e-25  Score=194.47  Aligned_cols=167  Identities=26%  Similarity=0.337  Sum_probs=130.3

Q ss_pred             ceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeC
Q 022298          107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM  186 (299)
Q Consensus       107 ~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~  186 (299)
                      ..|||++|+|+|+++..|.+..+||+++.+++.+++++...      ..+.+|||+|||+|.++++++++|+.+|++||+
T Consensus        11 ~~~~ii~G~~~g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~------~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~   84 (201)
T 2ift_A           11 GEVRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMPY------IHQSECLDGFAGSGSLGFEALSRQAKKVTFLEL   84 (201)
T ss_dssp             CEEECCSSTTTTCEEECC---------CHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECS
T ss_pred             CceEEEEeeeCCcEecCCCCCCcCcCHHHHHHHHHHHHHHh------cCCCeEEEcCCccCHHHHHHHHccCCEEEEEEC
Confidence            46899999999999999998889999999999999998752      257899999999999999999999889999999


Q ss_pred             CHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCC-eeEEEEcCCCCCCCe------------------
Q 022298          187 DPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGP-FDYMSVTPPYTAVDY------------------  246 (299)
Q Consensus       187 n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~-fDlI~iDPPY~~~~~------------------  246 (299)
                      |+.++ +.+++|++.+++. ++++++++|+.+++...     ..+. ||+|++||||.....                  
T Consensus        85 s~~~l-~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~  158 (201)
T 2ift_A           85 DKTVA-NQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNAL  158 (201)
T ss_dssp             CHHHH-HHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHH-HHHHHHHHHhCCCccceEEEECCHHHHHHhh-----ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcE
Confidence            99998 9999999999984 46899999998764210     1357 999999999874221                  


Q ss_pred             EEEEecCCCCCCCCCCCeEEEEEeeecceEEEEeecchhh
Q 022298          247 EVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQ  286 (299)
Q Consensus       247 ~~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~~~~~~  286 (299)
                      .++++.... +++....|.++++|+||.+.+.||++..+.
T Consensus       159 l~i~~~~~~-~~~~~~~~~~~~~~~yG~~~~~~~~~~~~~  197 (201)
T 2ift_A          159 IYVETEKDK-PLITPENWTLLKEKTTGIVSYRLYQNLEHH  197 (201)
T ss_dssp             EEEEEESSS-CCCCCTTEEEEEEEEETTEEEEEEEECC--
T ss_pred             EEEEECCCC-CccccchhHHHHHHhcCCEEEEEEecchhc
Confidence            126666555 555667899999999999999999987643

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.92  E-value=1e-24  Score=185.25  Aligned_cols=167  Identities=26%  Similarity=0.427  Sum_probs=139.8

Q ss_pred             ceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeC
Q 022298          107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM  186 (299)
Q Consensus       107 ~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~  186 (299)
                      +||+|++|+|+|+++..|.+..+||+++.+++.+++.+...      ..+.+|||+|||+|.++++++++|+.+|+++|+
T Consensus         2 ~~~~i~~g~~~~~~~~~~~~~~~rp~~~~~~~~~~~~l~~~------~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~   75 (187)
T 2fhp_A            2 NAMRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPY------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEK   75 (187)
T ss_dssp             -CCBCCSSTTTTCBCCCCCCCSSCCCCHHHHHHHHHHHCSC------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEES
T ss_pred             CceEEeeccccCccccCCCCCCcCcCHHHHHHHHHHHHHhh------cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEEC
Confidence            58999999999999999998889999999999999998642      357899999999999999999998889999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC------------------eEE
Q 022298          187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD------------------YEV  248 (299)
Q Consensus       187 n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~------------------~~~  248 (299)
                      |+.++ +.+++|++.+++.++++++++|+.+++....   ...++||+|++||||....                  ..+
T Consensus        76 ~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~  151 (187)
T 2fhp_A           76 NFAAL-KVIKENIAITKEPEKFEVRKMDANRALEQFY---EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIV  151 (187)
T ss_dssp             CHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHHH---HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CHHHH-HHHHHHHHHhCCCcceEEEECcHHHHHHHHH---hcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEE
Confidence            99998 9999999999986679999999988764321   1246899999999987322                  113


Q ss_pred             EEecCCCCCCCCCCCeEEEEEeeecceEEEEeecc
Q 022298          249 VEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPD  283 (299)
Q Consensus       249 vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~~~  283 (299)
                      +++.....++....+|...++++||.+.++||++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  186 (187)
T 2fhp_A          152 CETDKTVKLPETIGTLKKTRETVYGITQVTIYRQE  186 (187)
T ss_dssp             EEEETTCCCCSEETTEEEEEEEEETTEEEEEEEC-
T ss_pred             EEeCCcccccccccchhhhhhhccCceEEEEEEec
Confidence            77777666665566899999999999999999854

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.86  E-value=7.3e-21  Score=158.81  Aligned_cols=151  Identities=34%  Similarity=0.549  Sum_probs=123.7

Q ss_pred             eEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-CCCEEEEECCccchHHHHHHHcCCCEEEEEeC
Q 022298          108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASL-RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM  186 (299)
Q Consensus       108 ~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~-~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~  186 (299)
                      ||||++|+|+|+.+..+++  .||+++.+++.+++.+...      + .+.+|||+|||+|.++++++.+|.. |+++|+
T Consensus         1 ~~~i~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~   71 (171)
T 1ws6_A            1 VVRILGGKARGVALKVPAS--ARPSPVRLRKALFDYLRLR------YPRRGRFLDPFAGSGAVGLEAASEGWE-AVLVEK   71 (171)
T ss_dssp             CEECCSGGGTTCEECCCTT--CCCCCHHHHHHHHHHHHHH------CTTCCEEEEETCSSCHHHHHHHHTTCE-EEEECC
T ss_pred             CceEeecccCCeEecCCCC--CCCCHHHHHHHHHHHHHhh------ccCCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeC
Confidence            7899999999999999998  8999999999999998753      2 5789999999999999999999876 999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCe------------------EE
Q 022298          187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY------------------EV  248 (299)
Q Consensus       187 n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~------------------~~  248 (299)
                      |+.++ +.+++|++.++.  +++++++|+.+++....   ...++||+|++||||. ...                  .+
T Consensus        72 ~~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~---~~~~~~D~i~~~~~~~-~~~~~~~~~~~~~~~L~~gG~~~  144 (171)
T 1ws6_A           72 DPEAV-RLLKENVRRTGL--GARVVALPVEVFLPEAK---AQGERFTVAFMAPPYA-MDLAALFGELLASGLVEAGGLYV  144 (171)
T ss_dssp             CHHHH-HHHHHHHHHHTC--CCEEECSCHHHHHHHHH---HTTCCEEEEEECCCTT-SCTTHHHHHHHHHTCEEEEEEEE
T ss_pred             CHHHH-HHHHHHHHHcCC--ceEEEeccHHHHHHhhh---ccCCceEEEEECCCCc-hhHHHHHHHHHhhcccCCCcEEE
Confidence            99998 999999999987  48899999988764331   1124799999999996 221                  11


Q ss_pred             EEecCCCCCCCCCCCeEEEEEeeecceEEEEee
Q 022298          249 VEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG  281 (299)
Q Consensus       249 vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~  281 (299)
                      +++.....++       ..++++||.+.++||+
T Consensus       145 ~~~~~~~~~~-------~~~~~~y~~~~~~~~~  170 (171)
T 1ws6_A          145 LQHPKDLYLP-------LGERRVYGENALTLVE  170 (171)
T ss_dssp             EEEETTSCCT-------TSEEEEETTEEEEEEE
T ss_pred             EEeCCccCCc-------hhhhhccCcEEEEEEE
Confidence            5554443332       4578899999999986

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.85  E-value=9e-21  Score=160.48  Aligned_cols=152  Identities=26%  Similarity=0.391  Sum_probs=112.5

Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 022298          120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL  199 (299)
Q Consensus       120 ~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~  199 (299)
                      +|..|++..+||+++.+++.+++.+...      ..+.+|||+|||+|.++++++++|..+|+++|+|+.++ +.+++|+
T Consensus         2 ~l~~p~~~~~rp~~~~~~~~~~~~l~~~------~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~   74 (177)
T 2esr_A            2 SLKTLDGKITRPTSDKVRGAIFNMIGPY------FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNI   74 (177)
T ss_dssp             ----------------CHHHHHHHHCSC------CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHH
T ss_pred             cccCCCCCCCCcCHHHHHHHHHHHHHhh------cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHH
Confidence            4677888889999999999999998632      35789999999999999999999877999999999998 9999999


Q ss_pred             HHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC------------------CeEEEEecCCCCCCCCC
Q 022298          200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV------------------DYEVVEYPLRTDMLDTC  261 (299)
Q Consensus       200 ~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~------------------~~~~vE~~~~~~~~~~~  261 (299)
                      +.+++.++++++++|+.+++...      .+.||+|++||||...                  ...+++......++...
T Consensus        75 ~~~~~~~~~~~~~~d~~~~~~~~------~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~~~~~  148 (177)
T 2esr_A           75 IMTKAENRFTLLKMEAERAIDCL------TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLLPKEI  148 (177)
T ss_dssp             HTTTCGGGEEEECSCHHHHHHHB------CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCCCSEE
T ss_pred             HHcCCCCceEEEECcHHHhHHhh------cCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcccccccc
Confidence            99988767999999998876432      3579999999998421                  11236776666666656


Q ss_pred             CCeEEEEEeeecceEEEEeecch
Q 022298          262 GCLVKIKDRRFGRTHLAIYGPDW  284 (299)
Q Consensus       262 ~~l~~~~~r~YG~t~l~~y~~~~  284 (299)
                      .+|...++|+||.+.+.||.+.-
T Consensus       149 ~~~~~~~~~~yg~~~~~~~~~~~  171 (177)
T 2esr_A          149 ATLGIWKEKIYGISKVTVYVNEG  171 (177)
T ss_dssp             TTEEEEEEEEETTEEEEEEEETT
T ss_pred             CceEEEEeeecCcEEEEEEEecc
Confidence            78999999999999999998654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.61  E-value=8.2e-15  Score=135.29  Aligned_cols=120  Identities=18%  Similarity=0.243  Sum_probs=98.8

Q ss_pred             ceEEEEee--eeCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEE
Q 022298          107 RLLQVLGG--KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHF  183 (299)
Q Consensus       107 ~~mrIi~G--k~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~  183 (299)
                      ..+.++.|  .|.|..+.+..+. .+||.++.+.+.+++.+...       .+.+|||+|||+|.+++.++..+..+|++
T Consensus        79 ~p~~yi~g~~~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~-------~~~~vLDlG~GsG~~~~~la~~~~~~v~~  151 (284)
T 1nv8_A           79 YPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY-------GIKTVADIGTGSGAIGVSVAKFSDAIVFA  151 (284)
T ss_dssp             CCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH-------TCCEEEEESCTTSHHHHHHHHHSSCEEEE
T ss_pred             CCCeEEeeeeEECCeEEEeCCCceecChhHHHHHHHHHHHhccc-------CCCEEEEEeCchhHHHHHHHHCCCCEEEE
Confidence            34444455  4779998876554 58999999999998887642       36799999999999999988774457999


Q ss_pred             EeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe---eEEEEcCCCCC
Q 022298          184 VEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF---DYMSVTPPYTA  243 (299)
Q Consensus       184 VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f---DlI~iDPPY~~  243 (299)
                      +|+|+.++ +.+++|++.+++.++++++++|+.+.+.         ++|   |+|++||||..
T Consensus       152 vDis~~al-~~A~~n~~~~~l~~~v~~~~~D~~~~~~---------~~f~~~D~IvsnPPyi~  204 (284)
T 1nv8_A          152 TDVSSKAV-EIARKNAERHGVSDRFFVRKGEFLEPFK---------EKFASIEMILSNPPYVK  204 (284)
T ss_dssp             EESCHHHH-HHHHHHHHHTTCTTSEEEEESSTTGGGG---------GGTTTCCEEEECCCCBC
T ss_pred             EECCHHHH-HHHHHHHHHcCCCCceEEEECcchhhcc---------cccCCCCEEEEcCCCCC
Confidence            99999998 9999999999998789999999987541         367   99999999985

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.59  E-value=1.1e-14  Score=140.11  Aligned_cols=110  Identities=21%  Similarity=0.261  Sum_probs=91.7

Q ss_pred             eEEecCC-------CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHH
Q 022298          119 KKLLSPK-------GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWV  190 (299)
Q Consensus       119 r~L~~p~-------~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~A  190 (299)
                      -++.+|.       +.+.+|+++..|...+..+..       ..+.+|||+|||||.++++++++ |+.+|+++|+|+.+
T Consensus        11 ~~~~~p~~~~~~~~~~F~np~~~~nr~l~~~~l~~-------~~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~a   83 (378)
T 2dul_A           11 AKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNI-------LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDA   83 (378)
T ss_dssp             EEEEEC--------CCCCCGGGHHHHHHHHHHHHH-------HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHH
T ss_pred             EEEEecCccccCCCCceeCCchHHHHHHHHHHHHH-------cCCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHH
Confidence            4555654       456899999988887777765       25789999999999999999987 77789999999999


Q ss_pred             HHHHHHHHHHHh---------------CCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          191 VSNVLIPNLEWT---------------GFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       191 l~~~a~~N~~~~---------------g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      + +.+++|++.+               ++.+ ++++++|+.+++...      .+.||+|++|||+..
T Consensus        84 v-~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~~~~------~~~fD~I~lDP~~~~  143 (378)
T 2dul_A           84 Y-ELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLMAER------HRYFHFIDLDPFGSP  143 (378)
T ss_dssp             H-HHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHHHHS------TTCEEEEEECCSSCC
T ss_pred             H-HHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHHHhc------cCCCCEEEeCCCCCH
Confidence            8 9999999999               8765 899999999887542      357999999998763

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.58  E-value=6.6e-15  Score=136.44  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=73.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||+|.+++.|+++|+.+|+++|+|+.|+ +.+++|++.|++.++++++++|+.++.        ..+.||.
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~-~~~~~N~~~N~v~~~v~~~~~D~~~~~--------~~~~~D~  195 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFP--------GENIADR  195 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCC--------CCSCEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCcHHHhc--------cccCCCE
Confidence            5889999999999999999999988999999999998 999999999999999999999998864        2468999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++|||+..
T Consensus       196 Vi~~~p~~~  204 (278)
T 3k6r_A          196 ILMGYVVRT  204 (278)
T ss_dssp             EEECCCSSG
T ss_pred             EEECCCCcH
Confidence            999999875

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.57  E-value=2e-14  Score=138.14  Aligned_cols=84  Identities=15%  Similarity=0.194  Sum_probs=74.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~-~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||||.++++++++|+.+|++||+|+.++ +.+++|++.+++.+ +++++++|+.+++....   ..+.+||
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al-~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~---~~~~~fD  287 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSR-ALSLAHFEANHLDMANHQLVVMDVFDYFKYAR---RHHLTYD  287 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHH-HHHHHHHHHTTCCCTTEEEEESCHHHHHHHHH---HTTCCEE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHHH---HhCCCcc
Confidence            4789999999999999999998988999999999998 99999999999875 69999999999876431   1235899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|++||||.
T Consensus       288 ~Ii~DPP~~  296 (385)
T 2b78_A          288 IIIIDPPSF  296 (385)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999999995

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.56  E-value=1e-14  Score=141.07  Aligned_cols=106  Identities=19%  Similarity=0.220  Sum_probs=81.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 022298          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (299)
Q Consensus       128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~  205 (299)
                      +++|....-|..+...+.....  ...++.+|||+|||||++|++++++  ||.+|++||+|+.++ +.+++|++.|++.
T Consensus        27 Ffn~~~~~nR~l~~~~~~~~~~--~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av-~~~~~N~~~Ngl~  103 (392)
T 3axs_A           27 FYNPRMRVNRDLAVLGLEYLCK--KLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAI-EIMKENFKLNNIP  103 (392)
T ss_dssp             SCCGGGHHHHHHHHHHHHHHHH--HHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHH-HHHHHHHHHTTCC
T ss_pred             EEcCCcHHHHHHHHHHHHHHhh--ccCCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHhCCC
Confidence            4577776655544333221100  0013689999999999999999984  778999999999998 9999999999998


Q ss_pred             Cc-EEEEEcchhhHHH-HHhhhcCCCCCeeEEEEcCCCCC
Q 022298          206 DV-SSIHTVRVETFLE-RAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       206 ~~-~~vi~~D~~~~l~-~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++ ++++++|+.+++. ..      .++||+|++|| |..
T Consensus       104 ~~~v~v~~~Da~~~l~~~~------~~~fD~V~lDP-~g~  136 (392)
T 3axs_A          104 EDRYEIHGMEANFFLRKEW------GFGFDYVDLDP-FGT  136 (392)
T ss_dssp             GGGEEEECSCHHHHHHSCC------SSCEEEEEECC-SSC
T ss_pred             CceEEEEeCCHHHHHHHhh------CCCCcEEEECC-CcC
Confidence            77 9999999999875 32      35799999999 543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=99.56  E-value=1.2e-15  Score=141.63  Aligned_cols=91  Identities=12%  Similarity=0.178  Sum_probs=76.8

Q ss_pred             HHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022298          138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (299)
Q Consensus       138 ealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~  217 (299)
                      ..+||++..       +.+..+||+|+|||++|+||+|++ +++++||+++.++ +.+++|++.   .+++++++.|+..
T Consensus        81 ~~yf~~l~~-------~n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~-~~L~~Nl~~---~~~~~V~~~D~~~  148 (283)
T 2oo3_A           81 LEYISVIKQ-------INLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEY-NFLLKLPHF---NKKVYVNHTDGVS  148 (283)
T ss_dssp             HHHHHHHHH-------HSSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHH-HHHTTSCCT---TSCEEEECSCHHH
T ss_pred             HHHHHHHHH-------hcCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHH-HHHHHHhCc---CCcEEEEeCcHHH
Confidence            368888876       346789999999999999999965 8999999999998 999999975   3568999999998


Q ss_pred             HHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          218 FLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       218 ~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .+...   .....+||+||+||||..
T Consensus       149 ~L~~l---~~~~~~fdLVfiDPPYe~  171 (283)
T 2oo3_A          149 KLNAL---LPPPEKRGLIFIDPSYER  171 (283)
T ss_dssp             HHHHH---CSCTTSCEEEEECCCCCS
T ss_pred             HHHHh---cCCCCCccEEEECCCCCC
Confidence            88654   233457999999999994

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.51  E-value=1.5e-13  Score=129.91  Aligned_cols=102  Identities=23%  Similarity=0.261  Sum_probs=83.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC-c
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-V  207 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~-~  207 (299)
                      .-|.....++.+.+.+...      -.+.+|||+|||+|.++++++.+|+ +|++||+|+.++ +.+++|++.+++.+ +
T Consensus       133 ~f~dq~~~~~~l~~~~~~~------~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al-~~a~~n~~~~gl~~~~  204 (332)
T 2igt_A          133 VFPEQIVHWEWLKNAVETA------DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAI-GWAKENQVLAGLEQAP  204 (332)
T ss_dssp             CCGGGHHHHHHHHHHHHHS------SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHH-HHHHHHHHHHTCTTSC
T ss_pred             echHHHHHHHHHHHHHHhc------CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHHcCCCccc
Confidence            3566666666676666421      1467999999999999999999998 899999999998 99999999999876 4


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                      ++++++|+.+++....   ...++||+|++||||
T Consensus       205 v~~i~~D~~~~l~~~~---~~~~~fD~Ii~dPP~  235 (332)
T 2igt_A          205 IRWICEDAMKFIQREE---RRGSTYDIILTDPPK  235 (332)
T ss_dssp             EEEECSCHHHHHHHHH---HHTCCBSEEEECCCS
T ss_pred             eEEEECcHHHHHHHHH---hcCCCceEEEECCcc
Confidence            8999999999875421   013689999999996

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.50  E-value=5.3e-14  Score=126.88  Aligned_cols=111  Identities=17%  Similarity=0.235  Sum_probs=85.3

Q ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 022298          118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASL-RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI  196 (299)
Q Consensus       118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~-~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~  196 (299)
                      +.++..+.+ ..|+.+|.+.-+-  ++..       . .+.+|||+|||+|.+++.++.++..+|++||+++.++ +.++
T Consensus        21 ~~~i~q~~~-~~~~~~d~~ll~~--~~~~-------~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~-~~a~   89 (259)
T 3lpm_A           21 NLRIIQSPS-VFSFSIDAVLLAK--FSYL-------PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLA-DMAK   89 (259)
T ss_dssp             TEEEEEBTT-TBCCCHHHHHHHH--HCCC-------CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHH-HHHH
T ss_pred             CEEEEeCCC-CccCcHHHHHHHH--HhcC-------CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHH-HHHH
Confidence            455555554 4688888543222  2211       2 4789999999999999998888776899999999998 9999


Q ss_pred             HHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       197 ~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      +|++.+++.++++++++|+.++....     ..++||+|++||||...
T Consensus        90 ~n~~~~~~~~~v~~~~~D~~~~~~~~-----~~~~fD~Ii~npPy~~~  132 (259)
T 3lpm_A           90 RSVAYNQLEDQIEIIEYDLKKITDLI-----PKERADIVTCNPPYFAT  132 (259)
T ss_dssp             HHHHHTTCTTTEEEECSCGGGGGGTS-----CTTCEEEEEECCCC---
T ss_pred             HHHHHCCCcccEEEEECcHHHhhhhh-----ccCCccEEEECCCCCCC
Confidence            99999999888999999998875311     24789999999999643

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.48  E-value=3.9e-13  Score=128.17  Aligned_cols=114  Identities=17%  Similarity=0.165  Sum_probs=83.4

Q ss_pred             eEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 022298          119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN  198 (299)
Q Consensus       119 r~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N  198 (299)
                      ..+.++++.+..+.+. ..+.+++++....+    ..+.+|||+|||+|.+++.+ ++++.+|++||+|+.++ +.+++|
T Consensus       182 ~~~~~~~~~F~Q~n~~-~~~~l~~~~~~~~~----~~~~~vLDl~cG~G~~~l~l-a~~~~~V~gvd~~~~ai-~~a~~n  254 (369)
T 3bt7_A          182 MIYRQVENSFTQPNAA-MNIQMLEWALDVTK----GSKGDLLELYCGNGNFSLAL-ARNFDRVLATEIAKPSV-AAAQYN  254 (369)
T ss_dssp             CEEEEETTSCCCSBHH-HHHHHHHHHHHHTT----TCCSEEEEESCTTSHHHHHH-GGGSSEEEEECCCHHHH-HHHHHH
T ss_pred             EEEEECCCCeecCCHH-HHHHHHHHHHHHhh----cCCCEEEEccCCCCHHHHHH-HhcCCEEEEEECCHHHH-HHHHHH
Confidence            4455555555555554 34455555433211    23678999999999999955 45667899999999998 999999


Q ss_pred             HHHhCCCCcEEEEEcchhhHHHHHhhhcCCC------------CCeeEEEEcCCCCC
Q 022298          199 LEWTGFLDVSSIHTVRVETFLERAEQFVGKD------------GPFDYMSVTPPYTA  243 (299)
Q Consensus       199 ~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~------------~~fDlI~iDPPY~~  243 (299)
                      ++.+++. +++++++|+.+++....   ...            ..||+|++||||..
T Consensus       255 ~~~ng~~-~v~~~~~d~~~~~~~~~---~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g  307 (369)
T 3bt7_A          255 IAANHID-NVQIIRMAAEEFTQAMN---GVREFNRLQGIDLKSYQCETIFVDPPRSG  307 (369)
T ss_dssp             HHHTTCC-SEEEECCCSHHHHHHHS---SCCCCTTGGGSCGGGCCEEEEEECCCTTC
T ss_pred             HHHcCCC-ceEEEECCHHHHHHHHh---hccccccccccccccCCCCEEEECcCccc
Confidence            9999985 58999999998875431   110            37999999999974

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.47  E-value=5.7e-13  Score=121.14  Aligned_cols=117  Identities=24%  Similarity=0.249  Sum_probs=94.4

Q ss_pred             EEEee--eeCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEe
Q 022298          110 QVLGG--KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVE  185 (299)
Q Consensus       110 rIi~G--k~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD  185 (299)
                      .++.|  .+.|+.+.+..+. .+||.++.+.+.+.+.+..        .+.+|||+|||+|.+++.++.. +..+|+++|
T Consensus        69 ~~i~g~~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~~--------~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD  140 (276)
T 2b3t_A           69 AHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPE--------QPCRILDLGTGTGAIALALASERPDCEIIAVD  140 (276)
T ss_dssp             HHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCS--------SCCEEEEETCTTSHHHHHHHHHCTTSEEEEEC
T ss_pred             hHeeeeeEECCceEEeCCCCcccCchHHHHHHHHHHhccc--------CCCEEEEecCCccHHHHHHHHhCCCCEEEEEE
Confidence            34455  4678888866554 5799999998888777631        4679999999999999988754 455899999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          186 MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       186 ~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      +|+.++ +.+++|++.+++. +++++++|+.+.+.        .++||+|++||||...
T Consensus       141 ~s~~~l-~~a~~n~~~~~~~-~v~~~~~d~~~~~~--------~~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          141 RMPDAV-SLAQRNAQHLAIK-NIHILQSDWFSALA--------GQQFAMIVSNPPYIDE  189 (276)
T ss_dssp             SSHHHH-HHHHHHHHHHTCC-SEEEECCSTTGGGT--------TCCEEEEEECCCCBCT
T ss_pred             CCHHHH-HHHHHHHHHcCCC-ceEEEEcchhhhcc--------cCCccEEEECCCCCCc
Confidence            999998 9999999999886 58999999877531        3689999999999753

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.47  E-value=1.6e-13  Score=131.80  Aligned_cols=85  Identities=24%  Similarity=0.354  Sum_probs=74.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC-CCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~-~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++.+|+.+|++||+|+.++ +.+++|++.+++ .++++++++|+.+++....   ....+||
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al-~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~---~~~~~fD  295 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYR---DRGEKFD  295 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEESCHHHHHHHHH---HTTCCEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHHH---hcCCCCC
Confidence            4789999999999999999999888999999999998 999999999998 6569999999999875431   1236899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|++||||..
T Consensus       296 ~Ii~dpP~~~  305 (396)
T 3c0k_A          296 VIVMDPPKFV  305 (396)
T ss_dssp             EEEECCSSTT
T ss_pred             EEEECCCCCC
Confidence            9999999953

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.47  E-value=1.2e-13  Score=133.21  Aligned_cols=99  Identities=21%  Similarity=0.319  Sum_probs=80.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCC------------------------------
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS------------------------------  179 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~------------------------------  179 (299)
                      -|..+.+..++......       ..+..+||+|||||++.|||+.+++.                              
T Consensus       176 Apl~e~LAaall~l~~~-------~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~  248 (384)
T 3ldg_A          176 APIKENMAAAIILLSNW-------FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEAD  248 (384)
T ss_dssp             CCCCHHHHHHHHHHTTC-------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCC-------CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHH
Confidence            34556666666554432       24679999999999999999976543                              


Q ss_pred             ---------EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          180 ---------EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       180 ---------~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                               +|+++|+|+.++ +.+++|++.+|+.+.++++++|+.++.        ....||+|++||||+..
T Consensus       249 ~~~~~~~~~~v~GvDid~~al-~~Ar~Na~~~gl~~~I~~~~~D~~~l~--------~~~~fD~Iv~NPPYG~r  313 (384)
T 3ldg_A          249 EQADYDIQLDISGFDFDGRMV-EIARKNAREVGLEDVVKLKQMRLQDFK--------TNKINGVLISNPPYGER  313 (384)
T ss_dssp             HHCCTTCCCCEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCGGGCC--------CCCCSCEEEECCCCTTT
T ss_pred             HhhhccCCceEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChHHCC--------ccCCcCEEEECCchhhc
Confidence                     499999999998 999999999999888999999998753        13589999999999863

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.47  E-value=1.9e-13  Score=140.91  Aligned_cols=82  Identities=23%  Similarity=0.336  Sum_probs=74.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||||.+++.|+..|+.+|++||+|+.++ +.+++|++.+++. ++++++++|+.+++...      .++||
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al-~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~------~~~fD  611 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYL-EWAERNLRLNGLTGRAHRLIQADCLAWLREA------NEQFD  611 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCSTTEEEEESCHHHHHHHC------CCCEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHhc------CCCcc
Confidence            5789999999999999999999998999999999998 9999999999987 57999999999987642      47899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|++||||..
T Consensus       612 ~Ii~DPP~f~  621 (703)
T 3v97_A          612 LIFIDPPTFS  621 (703)
T ss_dssp             EEEECCCSBC
T ss_pred             EEEECCcccc
Confidence            9999999853

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.46  E-value=4.5e-13  Score=115.63  Aligned_cols=98  Identities=26%  Similarity=0.252  Sum_probs=80.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~  209 (299)
                      .++...+.+.+...+....    ...+.+|||+|||+|.+++.++.+|+.+|+++|+|+.++ +.+++|++.+++  +++
T Consensus        28 ~~~~~~~~~~l~~~~~~~~----~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~--~~~  100 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSLG----DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFKG--KFK  100 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHTT----SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHTGGGTT--SEE
T ss_pred             ecCchHHHHHHHHHHHHcC----CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHcCC--CEE
Confidence            4566667777766654321    135789999999999999999888887899999999998 999999998887  489


Q ss_pred             EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      ++++|+.++          ...||+|++||||...
T Consensus       101 ~~~~d~~~~----------~~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A          101 VFIGDVSEF----------NSRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             EEESCGGGC----------CCCCSEEEECCCCSSS
T ss_pred             EEECchHHc----------CCCCCEEEEcCCCccc
Confidence            999998864          2489999999999753

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.46  E-value=1e-12  Score=110.66  Aligned_cols=120  Identities=14%  Similarity=0.177  Sum_probs=96.4

Q ss_pred             ceEEEEeeeeCCeEEec--CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEE
Q 022298          107 RLLQVLGGKARRKKLLS--PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFV  184 (299)
Q Consensus       107 ~~mrIi~Gk~~Gr~L~~--p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~V  184 (299)
                      ..++.+.+.+.|+.+..  +.+...+++.+...+.+++.+..       ..+.+|||+|||+|.+++.++.++ .+|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~   80 (194)
T 1dus_A            9 SDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVV-------DKDDDILDLGCGYGVIGIALADEV-KSTTMA   80 (194)
T ss_dssp             CCEEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC-------CTTCEEEEETCTTSHHHHHHGGGS-SEEEEE
T ss_pred             ccccEEeeecCCCceEEEeCCCcCCccccchHHHHHHHHccc-------CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEE
Confidence            45788899999988765  34444455566677777777643       257899999999999999888884 579999


Q ss_pred             eCCHHHHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          185 EMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       185 D~n~~Al~~~a~~N~~~~g~~~-~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      |+++.++ +.+++|++.+++.+ +++++++|+.+.+.        .+.||+|++||||..
T Consensus        81 D~~~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~D~v~~~~~~~~  131 (194)
T 1dus_A           81 DINRRAI-KLAKENIKLNNLDNYDIRVVHSDLYENVK--------DRKYNKIITNPPIRA  131 (194)
T ss_dssp             ESCHHHH-HHHHHHHHHTTCTTSCEEEEECSTTTTCT--------TSCEEEEEECCCSTT
T ss_pred             ECCHHHH-HHHHHHHHHcCCCccceEEEECchhcccc--------cCCceEEEECCCccc
Confidence            9999998 99999999988765 58999999876531        368999999999875

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.46  E-value=3.4e-13  Score=119.26  Aligned_cols=98  Identities=16%  Similarity=0.168  Sum_probs=83.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~  209 (299)
                      +++.+.+.+.++..+...      ..+.+|||+|||+|.+++.++.+| .+|+++|+|+.++ +.+++|++.+++.++++
T Consensus        59 ~~~~~~~~~~l~~~~~~~------~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~  130 (241)
T 3gdh_A           59 SVTPEKIAEHIAGRVSQS------FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKI-ALARNNAEVYGIADKIE  130 (241)
T ss_dssp             HCCCHHHHHHHHHHHHHH------SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHHHTTCGGGEE
T ss_pred             ecCHHHHHHHHHHHhhhc------cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHH-HHHHHHHHHcCCCcCeE
Confidence            456677777777777653      357899999999999999999988 5799999999998 99999999999866799


Q ss_pred             EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++++|+.++..        .+.||+|++||||..
T Consensus       131 ~~~~d~~~~~~--------~~~~D~v~~~~~~~~  156 (241)
T 3gdh_A          131 FICGDFLLLAS--------FLKADVVFLSPPWGG  156 (241)
T ss_dssp             EEESCHHHHGG--------GCCCSEEEECCCCSS
T ss_pred             EEECChHHhcc--------cCCCCEEEECCCcCC
Confidence            99999988651        368999999999985

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.45  E-value=1e-13  Score=123.92  Aligned_cols=123  Identities=14%  Similarity=0.021  Sum_probs=85.5

Q ss_pred             eeeeCCeEEecCCCCC-CC----CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeC
Q 022298          113 GGKARRKKLLSPKGMD-VR----PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEM  186 (299)
Q Consensus       113 ~Gk~~Gr~L~~p~~~~-~R----Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~  186 (299)
                      ...+.|+.+.++.+.. .+    |.++.+.+.+++.+...     ...+.+|||+|||+|.++++++++. ..+|+++|+
T Consensus        23 ~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~   97 (254)
T 2h00_A           23 LREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSD-----KSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEV   97 (254)
T ss_dssp             HHHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGG-----GCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEES
T ss_pred             HHHcCCeeeecCccccCCCccchHHHHHHHHHHHhhcccc-----CCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEEC
Confidence            3455677777776643 33    44444444444332210     0146799999999999999888762 357999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEEEEcchhh-HHHHHhhhcCC-CCCeeEEEEcCCCCCC
Q 022298          187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVET-FLERAEQFVGK-DGPFDYMSVTPPYTAV  244 (299)
Q Consensus       187 n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~-~l~~~~~~~~~-~~~fDlI~iDPPY~~~  244 (299)
                      |+.++ +.+++|++.+++.++++++++|+.+ ++...   ... .++||+|++||||...
T Consensus        98 s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~~~~fD~i~~npp~~~~  153 (254)
T 2h00_A           98 DDMCF-NYAKKNVEQNNLSDLIKVVKVPQKTLLMDAL---KEESEIIYDFCMCNPPFFAN  153 (254)
T ss_dssp             CHHHH-HHHHHHHHHTTCTTTEEEEECCTTCSSTTTS---TTCCSCCBSEEEECCCCC--
T ss_pred             CHHHH-HHHHHHHHHcCCCccEEEEEcchhhhhhhhh---hcccCCcccEEEECCCCccC
Confidence            99998 9999999999988779999999765 22111   111 1579999999999753

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.45  E-value=1.7e-13  Score=132.33  Aligned_cols=98  Identities=19%  Similarity=0.322  Sum_probs=80.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCC------------------------------
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS------------------------------  179 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~------------------------------  179 (299)
                      -|..+.+..++......       ..+..|||+|||||++.|||+.+++.                              
T Consensus       183 Apl~e~lAa~ll~l~~~-------~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~  255 (393)
T 3k0b_A          183 APIKETMAAALVLLTSW-------HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAE  255 (393)
T ss_dssp             CSCCHHHHHHHHHHSCC-------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCC-------CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHH
Confidence            45666677776654432       24678999999999999999986543                              


Q ss_pred             ---------EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          180 ---------EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       180 ---------~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                               +|+++|+|+.++ +.+++|++.+|+.+.++++++|+.++.        ....||+|++||||..
T Consensus       256 ~~~~~~~~~~V~GvDid~~al-~~Ar~Na~~~gl~~~I~~~~~D~~~~~--------~~~~fD~Iv~NPPYg~  319 (393)
T 3k0b_A          256 DLANYDQPLNIIGGDIDARLI-EIAKQNAVEAGLGDLITFRQLQVADFQ--------TEDEYGVVVANPPYGE  319 (393)
T ss_dssp             HHCCTTCCCCEEEEESCHHHH-HHHHHHHHHTTCTTCSEEEECCGGGCC--------CCCCSCEEEECCCCCC
T ss_pred             HhhcccCCceEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChHhCC--------CCCCCCEEEECCCCcc
Confidence                     499999999998 999999999999877899999998753        1358999999999975

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.44  E-value=1.7e-13  Score=131.95  Aligned_cols=98  Identities=18%  Similarity=0.277  Sum_probs=78.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC-------------------------------
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-------------------------------  178 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa-------------------------------  178 (299)
                      -|..+.+..++......       ..+.+|||+|||||++.+||+.+++                               
T Consensus       177 Apl~e~lAa~ll~~~~~-------~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~  249 (385)
T 3ldu_A          177 APIRETLAAGLIYLTPW-------KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAF  249 (385)
T ss_dssp             CCCCHHHHHHHHHTSCC-------CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhhCC-------CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHH
Confidence            34455566565444322       2468999999999999999988754                               


Q ss_pred             --------CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          179 --------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       179 --------~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                              .+|+++|+|+.++ +.+++|++.+|+.+.+++.++|+.++.        ....||+|++||||..
T Consensus       250 ~~~~~~~~~~V~GvDid~~ai-~~Ar~Na~~~gl~~~i~~~~~D~~~l~--------~~~~~D~Iv~NPPyg~  313 (385)
T 3ldu_A          250 NKIDNESKFKIYGYDIDEESI-DIARENAEIAGVDEYIEFNVGDATQFK--------SEDEFGFIITNPPYGE  313 (385)
T ss_dssp             HHSCCSCCCCEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEECCGGGCC--------CSCBSCEEEECCCCCC
T ss_pred             HHhhccCCceEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChhhcC--------cCCCCcEEEECCCCcC
Confidence                    3599999999998 999999999999877999999998753        1358999999999985

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.43  E-value=3.8e-13  Score=123.24  Aligned_cols=108  Identities=15%  Similarity=0.155  Sum_probs=84.2

Q ss_pred             CeEEecCC-CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 022298          118 RKKLLSPK-GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI  196 (299)
Q Consensus       118 Gr~L~~p~-~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~  196 (299)
                      |.++.+.. .....+.....++.+.+.+.         ++.+|||+|||+|.+++.++.+|+.+|+++|+|+.++ +.++
T Consensus        96 g~~f~~d~~~~~f~~~~~~~~~~l~~~~~---------~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~-~~a~  165 (278)
T 2frn_A           96 GIKYKLDVAKIMFSPANVKERVRMAKVAK---------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLV  165 (278)
T ss_dssp             TEEEEEETTTSCCCGGGHHHHHHHHHHCC---------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHH
T ss_pred             CEEEEEEccceeEcCCcHHHHHHHHHhCC---------CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHH-HHHH
Confidence            44444422 22334444444555544432         4789999999999999999999887899999999998 9999


Q ss_pred             HHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       197 ~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +|++.+++.++++++++|+.++..        .++||+|++|||+..
T Consensus       166 ~n~~~n~~~~~v~~~~~D~~~~~~--------~~~fD~Vi~~~p~~~  204 (278)
T 2frn_A          166 ENIHLNKVEDRMSAYNMDNRDFPG--------ENIADRILMGYVVRT  204 (278)
T ss_dssp             HHHHHTTCTTTEEEECSCTTTCCC--------CSCEEEEEECCCSSG
T ss_pred             HHHHHcCCCceEEEEECCHHHhcc--------cCCccEEEECCchhH
Confidence            999999998889999999987642        468999999999875

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.43  E-value=4.4e-13  Score=128.61  Aligned_cols=85  Identities=24%  Similarity=0.300  Sum_probs=74.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+|+.+|++||+|+.++ +.+++|++.+++.++++++++|+.+++....   ....+||+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l-~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~---~~~~~fD~  292 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ---KKGEKFDI  292 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHH---HTTCCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEECCHHHHHHHHH---hhCCCCCE
Confidence            5789999999999999999988888999999999998 9999999999987569999999998875431   12468999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++||||..
T Consensus       293 Vi~dpP~~~  301 (396)
T 2as0_A          293 VVLDPPAFV  301 (396)
T ss_dssp             EEECCCCSC
T ss_pred             EEECCCCCC
Confidence            999999854

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.42  E-value=9.1e-14  Score=127.44  Aligned_cols=92  Identities=17%  Similarity=0.146  Sum_probs=72.9

Q ss_pred             HHHHHHHHhcCCCCCCCCC--CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC--------CCCc
Q 022298          138 GAAFDILQSAGGCPASLRP--GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG--------FLDV  207 (299)
Q Consensus       138 ealfn~L~~~~~~~~~~~~--~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g--------~~~~  207 (299)
                      +.+++.+..       ..+  .+|||+|||+|..+++++++|+ +|++||+++..+ +++++|++..+        +.++
T Consensus        76 e~l~~al~l-------~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~-~l~~~~l~~a~~~~~~~~~l~~~  146 (258)
T 2oyr_A           76 EAVAKAVGI-------KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQER  146 (258)
T ss_dssp             SHHHHHTTC-------BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHH-HHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHHHHHhcc-------cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHHHHhhHhhhhhhhcC
Confidence            456666542       135  7999999999999999999998 599999999987 88888876542        3246


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      ++++++|+.+++...      .+.||+||+||||...
T Consensus       147 i~~~~~D~~~~L~~~------~~~fDvV~lDP~y~~~  177 (258)
T 2oyr_A          147 LQLIHASSLTALTDI------TPRPQVVYLDPMFPHK  177 (258)
T ss_dssp             EEEEESCHHHHSTTC------SSCCSEEEECCCCCCC
T ss_pred             EEEEECCHHHHHHhC------cccCCEEEEcCCCCCc
Confidence            899999999886432      2479999999999764

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.42  E-value=1.6e-13  Score=117.64  Aligned_cols=105  Identities=21%  Similarity=0.253  Sum_probs=68.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 022298          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (299)
Q Consensus       127 ~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~  205 (299)
                      ..+||.++.+.+.+++.+...      ..+.+|||+|||+|.+++.++.++. .+++++|+|+.++ +.+++|++.++. 
T Consensus         8 ~~p~~~~~~~~~~~~~~l~~~------~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~-   79 (215)
T 4dzr_A            8 LIPRPDTEVLVEEAIRFLKRM------PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDAL-AVARRNAERFGA-   79 (215)
T ss_dssp             GSCCHHHHHHHHHHHHHHTTC------CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------
T ss_pred             cCCCccHHHHHHHHHHHhhhc------CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHhCC-
Confidence            346888998999888888641      2578999999999999999988753 3799999999998 999999998877 


Q ss_pred             CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       206 ~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                       +++++++|+.+.+....   ...++||+|++||||..
T Consensus        80 -~~~~~~~d~~~~~~~~~---~~~~~fD~i~~npp~~~  113 (215)
T 4dzr_A           80 -VVDWAAADGIEWLIERA---ERGRPWHAIVSNPPYIP  113 (215)
T ss_dssp             ----CCHHHHHHHHHHHH---HTTCCBSEEEECCCCCC
T ss_pred             -ceEEEEcchHhhhhhhh---hccCcccEEEECCCCCC
Confidence             47888999988654310   11378999999999965

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.41  E-value=5.4e-13  Score=128.91  Aligned_cols=78  Identities=26%  Similarity=0.304  Sum_probs=68.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||||.+++.++.+|+. |++||+|+.++ +.+++|++.+++.+  ++.++|+.+++...      .+.||+
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al-~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~~~fD~  283 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEAL-GVLDQAALRLGLRV--DIRHGEALPTLRGL------EGPFHH  283 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHH-HHHHHHHHHHTCCC--EEEESCHHHHHHTC------CCCEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHH-HHHHHHHHHhCCCC--cEEEccHHHHHHHh------cCCCCE
Confidence            3889999999999999999999987 99999999998 99999999999875  46699999887532      234999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++||||-
T Consensus       284 Ii~dpP~f  291 (393)
T 4dmg_A          284 VLLDPPTL  291 (393)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcC
Confidence            99999983

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.41  E-value=6.1e-13  Score=127.09  Aligned_cols=98  Identities=20%  Similarity=0.167  Sum_probs=81.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~-~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      -|..+.+..++.+.+ .       ..+.+|||+|||||.++++++.+|.. +|+++|+|+.++ +.+++|++.+|+.+++
T Consensus       200 a~l~~~la~~l~~~~-~-------~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l-~~A~~n~~~~gl~~~i  270 (373)
T 3tm4_A          200 AHLKASIANAMIELA-E-------LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHL-IGAEMNALAAGVLDKI  270 (373)
T ss_dssp             TCCCHHHHHHHHHHH-T-------CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHH-HHHHHHHHHTTCGGGC
T ss_pred             CCccHHHHHHHHHhh-c-------CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHHHcCCCCce
Confidence            445666777777666 3       35789999999999999999998763 699999999998 9999999999987779


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +++++|+.++..       ..+.||+|++||||..
T Consensus       271 ~~~~~D~~~~~~-------~~~~fD~Ii~npPyg~  298 (373)
T 3tm4_A          271 KFIQGDATQLSQ-------YVDSVDFAISNLPYGL  298 (373)
T ss_dssp             EEEECCGGGGGG-------TCSCEEEEEEECCCC-
T ss_pred             EEEECChhhCCc-------ccCCcCEEEECCCCCc
Confidence            999999987531       2368999999999986

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.40  E-value=7.6e-13  Score=124.88  Aligned_cols=99  Identities=17%  Similarity=0.143  Sum_probs=81.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      ..|..+.+..++.+.+..       ..+.+|||+|||||.+.+|++.++  ..+++++|+|+.++ +.+++|++..|+. 
T Consensus       184 ~a~l~~~la~~l~~~~~~-------~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i-~~a~~n~~~~g~~-  254 (354)
T 3tma_A          184 RGSLTPVLAQALLRLADA-------RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRL-GLAREAALASGLS-  254 (354)
T ss_dssp             SCSCCHHHHHHHHHHTTC-------CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHH-HHHHHHHHHTTCT-
T ss_pred             CCCcCHHHHHHHHHHhCC-------CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHH-HHHHHHHHHcCCC-
Confidence            355667777777766543       257899999999999999999875  24699999999998 9999999999987 


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +++++++|+.++..       ....||+|++||||..
T Consensus       255 ~i~~~~~D~~~~~~-------~~~~~D~Ii~npPyg~  284 (354)
T 3tma_A          255 WIRFLRADARHLPR-------FFPEVDRILANPPHGL  284 (354)
T ss_dssp             TCEEEECCGGGGGG-------TCCCCSEEEECCCSCC
T ss_pred             ceEEEeCChhhCcc-------ccCCCCEEEECCCCcC
Confidence            68999999988642       1356899999999985

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.40  E-value=2.3e-12  Score=121.41  Aligned_cols=76  Identities=13%  Similarity=0.178  Sum_probs=68.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++++ ++ |+.+|+++|+|+.++ +.+++|++.+++.++++++++|+.+++          ++||+
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai-~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~~fD~  261 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAI-ELLKKNIKLNKLEHKIIPILSDVREVD----------VKGNR  261 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCGGGCC----------CCEEE
T ss_pred             CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECChHHhc----------CCCcE
Confidence            578999999999999999 66 778999999999998 999999999998767999999998763          57999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++|||+..
T Consensus       262 Vi~dpP~~~  270 (336)
T 2yx1_A          262 VIMNLPKFA  270 (336)
T ss_dssp             EEECCTTTG
T ss_pred             EEECCcHhH
Confidence            999999875

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.40  E-value=1.7e-12  Score=126.46  Aligned_cols=113  Identities=18%  Similarity=0.158  Sum_probs=86.8

Q ss_pred             CeEEecCCCCCCCCC---HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 022298          118 RKKLLSPKGMDVRPM---MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV  194 (299)
Q Consensus       118 Gr~L~~p~~~~~RPt---td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~  194 (299)
                      |..+.++.+....+.   ++.+.+.+.+.+..       ..+.+|||+|||+|.+++.++.+ +.+|+++|+++.++ +.
T Consensus       253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~-------~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al-~~  323 (433)
T 1uwv_A          253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDV-------QPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALV-EK  323 (433)
T ss_dssp             TEEEECCSSSCCCSBHHHHHHHHHHHHHHHTC-------CTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHH-HH
T ss_pred             CEEEEECcccccccCHHHHHHHHHHHHHhhcC-------CCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHH-HH
Confidence            888888777665443   34455555555542       24679999999999999988777 45799999999998 99


Q ss_pred             HHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          195 LIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       195 a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +++|++.+++. +++++++|+.+++...   ....++||+|++||||..
T Consensus       324 A~~n~~~~~~~-~v~f~~~d~~~~l~~~---~~~~~~fD~Vv~dPPr~g  368 (433)
T 1uwv_A          324 GQQNARLNGLQ-NVTFYHENLEEDVTKQ---PWAKNGFDKVLLDPARAG  368 (433)
T ss_dssp             HHHHHHHTTCC-SEEEEECCTTSCCSSS---GGGTTCCSEEEECCCTTC
T ss_pred             HHHHHHHcCCC-ceEEEECCHHHHhhhh---hhhcCCCCEEEECCCCcc
Confidence            99999999986 5899999998754210   011357999999999985

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.38  E-value=5.3e-13  Score=121.93  Aligned_cols=84  Identities=18%  Similarity=0.107  Sum_probs=70.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCH-------HHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP-------WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~-------~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~  227 (299)
                      .+.+|||+|||+|.+++.++++|+ +|+++|+|+       .++ +.+++|++.+++.++++++++|+.+++....   .
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l-~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~---~  157 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGI-RRALLNPETQDTAARINLHFGNAAEQMPALV---K  157 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHH-HHHHHSHHHHHHHTTEEEEESCHHHHHHHHH---H
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHH-HHHHhHHHhhCCccCeEEEECCHHHHHHhhh---c
Confidence            467999999999999999988886 699999999       998 9999999998877779999999998875431   0


Q ss_pred             CCCCeeEEEEcCCCCC
Q 022298          228 KDGPFDYMSVTPPYTA  243 (299)
Q Consensus       228 ~~~~fDlI~iDPPY~~  243 (299)
                      ..+.||+|++||||..
T Consensus       158 ~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          158 TQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHCCCSEEEECCCC--
T ss_pred             cCCCccEEEECCCCCC
Confidence            0157999999999975

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.37  E-value=1.4e-12  Score=124.80  Aligned_cols=83  Identities=23%  Similarity=0.272  Sum_probs=71.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+ +.+|+++|+|+.++ +.+++|++.+++.+ ++++++|+.+++....   ....+||+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~-~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~---~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEAL-RRAEENARLNGLGN-VRVLEANAFDLLRRLE---KEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHH-HHHHHHHHHTTCTT-EEEEESCHHHHHHHHH---HTTCCEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCCCC-ceEEECCHHHHHHHHH---hcCCCeeE
Confidence            4679999999999999998887 66899999999998 99999999999877 8999999999875431   12468999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++||||..
T Consensus       283 Ii~dpP~~~  291 (382)
T 1wxx_A          283 VVLDPPAFA  291 (382)
T ss_dssp             EEECCCCSC
T ss_pred             EEECCCCCC
Confidence            999999844

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.37  E-value=9.6e-13  Score=119.36  Aligned_cols=89  Identities=22%  Similarity=0.257  Sum_probs=70.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHH---hCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEW---TGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~---~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+|||+|||+|.+++.++.++ ..+|++||+++.++ +.+++|++.   +++.++++++++|+.++......-....+
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~-~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMA-EFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHH-HHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            46799999999999999998885 45899999999998 999999998   88877899999999887432100001246


Q ss_pred             CeeEEEEcCCCCCC
Q 022298          231 PFDYMSVTPPYTAV  244 (299)
Q Consensus       231 ~fDlI~iDPPY~~~  244 (299)
                      +||+|++||||...
T Consensus       115 ~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          115 HFHHVIMNPPYNDA  128 (260)
T ss_dssp             CEEEEEECCCC---
T ss_pred             CcCEEEECCCCcCC
Confidence            89999999999764

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.37  E-value=8.7e-13  Score=128.31  Aligned_cols=81  Identities=20%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh--CCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~--g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      +.+|||+|||+|..++.++.+| .+|++||+|+.++ +.+++|++.+  |+ ++++++++|+.+++....     .++||
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l-~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~~fD  165 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETA-VAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TFHPD  165 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHH-HHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HHCCS
T ss_pred             CCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHH-HHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CCCce
Confidence            7899999999999998655555 5899999999998 9999999999  87 569999999998765421     24799


Q ss_pred             EEEEcCCCCCC
Q 022298          234 YMSVTPPYTAV  244 (299)
Q Consensus       234 lI~iDPPY~~~  244 (299)
                      +||+||||...
T Consensus       166 vV~lDPPrr~~  176 (410)
T 3ll7_A          166 YIYVDPARRSG  176 (410)
T ss_dssp             EEEECCEEC--
T ss_pred             EEEECCCCcCC
Confidence            99999999873

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.36  E-value=3.1e-12  Score=117.45  Aligned_cols=127  Identities=15%  Similarity=0.136  Sum_probs=94.8

Q ss_pred             cccccccceEEEEeeeeCCeEEecCCCCCCCCCHHH----HHHHHHHHH-HhcCCCCCCCCCCEEEEECCccchHHHHHH
Q 022298          100 QEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEV----VKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTGSVGIEAI  174 (299)
Q Consensus       100 ~~p~~~~~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~----Vrealfn~L-~~~~~~~~~~~~~~VLDLfaGSGalgIEAl  174 (299)
                      +.-+...+-++|+.+...|+.|... |.  ++++++    ..|.+++.. ...      ..+.+|||+|||+|.++.+++
T Consensus        24 ~~~~s~~~~i~v~~~~~~g~~L~ld-g~--~q~~~~de~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~   94 (275)
T 1iy9_A           24 HTEQTEFQHLEMVETEEFGNMLFLD-GM--VMTSEKDEFVYHEMVAHVPLFTH------PNPEHVLVVGGGDGGVIREIL   94 (275)
T ss_dssp             EEEECSSCEEEEEEETTTEEEEEET-TE--EEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEESCTTCHHHHHHT
T ss_pred             EEEECCCceEEEEEcCCCCEEEEEC-CE--EeecccchhHHHHHHHHHHHhhC------CCCCEEEEECCchHHHHHHHH
Confidence            3334445678888888778888776 32  333332    556666542 111      246899999999999999999


Q ss_pred             Hc-CCCEEEEEeCCHHHHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          175 SR-GCSEVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       175 Sr-Ga~~V~~VD~n~~Al~~~a~~N~~~~--g~-~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      ++ |..+|++||+|+.++ +.+++|+..+  ++ .++++++.+|+.+++..      ..++||+|++|+|+.
T Consensus        95 ~~~~~~~v~~vEid~~~v-~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~------~~~~fD~Ii~d~~~~  159 (275)
T 1iy9_A           95 KHPSVKKATLVDIDGKVI-EYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK------SENQYDVIMVDSTEP  159 (275)
T ss_dssp             TCTTCSEEEEEESCHHHH-HHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT------CCSCEEEEEESCSSC
T ss_pred             hCCCCceEEEEECCHHHH-HHHHHHhHhhccccCCCceEEEECcHHHHHhh------CCCCeeEEEECCCCC
Confidence            87 778999999999998 9999998653  33 35799999999988743      246899999999874

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.35  E-value=3.3e-12  Score=116.81  Aligned_cols=79  Identities=14%  Similarity=0.069  Sum_probs=68.9

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++.+ ++.+|++||+|+.++ +.+++|++.+++.+ +.++++|+.++ ..       .++||
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av-~~a~~n~~~n~l~~-~~~~~~d~~~~-~~-------~~~~D  188 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAY-HYLCENIKLNKLNN-VIPILADNRDV-EL-------KDVAD  188 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHH-HHHHHHHHHTTCSS-EEEEESCGGGC-CC-------TTCEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-EEEEECChHHc-Cc-------cCCce
Confidence            5789999999999999999887 456899999999998 99999999999865 78999999876 21       36899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|++|||+..
T Consensus       189 ~Vi~d~p~~~  198 (272)
T 3a27_A          189 RVIMGYVHKT  198 (272)
T ss_dssp             EEEECCCSSG
T ss_pred             EEEECCcccH
Confidence            9999999843

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.34  E-value=5.1e-12  Score=121.14  Aligned_cols=110  Identities=16%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Q 022298          118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLI  196 (299)
Q Consensus       118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~  196 (299)
                      +..+...++...+...+...+.+++.+..       ..+.+|||+|||+|.++++++.++ ..+|++||+|+.++ +.++
T Consensus       192 ~~~~~~~pg~Fs~~~~d~~~~~ll~~l~~-------~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al-~~Ar  263 (375)
T 4dcm_A          192 DWTIHNHANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSR  263 (375)
T ss_dssp             TEEEEECTTCTTCSSCCHHHHHHHHTCCC-------SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHH-HHHH
T ss_pred             ceEEEeCCCcccCCcccHHHHHHHHhCcc-------cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHH-HHHH
Confidence            45566666666666767666666666643       245899999999999999999885 56899999999998 9999


Q ss_pred             HHHHHhCCCC--cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          197 PNLEWTGFLD--VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       197 ~N~~~~g~~~--~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +|++.+++.+  +++++.+|+.+.+        ..++||+|++||||..
T Consensus       264 ~n~~~ngl~~~~~v~~~~~D~~~~~--------~~~~fD~Ii~nppfh~  304 (375)
T 4dcm_A          264 LNVETNMPEALDRCEFMINNALSGV--------EPFRFNAVLCNPPFHQ  304 (375)
T ss_dssp             HHHHHHCGGGGGGEEEEECSTTTTC--------CTTCEEEEEECCCC--
T ss_pred             HHHHHcCCCcCceEEEEechhhccC--------CCCCeeEEEECCCccc
Confidence            9999998754  4778999988743        2468999999999975

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.33  E-value=5.6e-12  Score=114.45  Aligned_cols=120  Identities=13%  Similarity=0.059  Sum_probs=93.0

Q ss_pred             EeeeeCCeEEecCCCCC---CCCCHHHHHHHHHHHH-----------HhcCCCCCCCCCCEEEEECCccchHHHHHHHc-
Q 022298          112 LGGKARRKKLLSPKGMD---VRPMMEVVKGAAFDIL-----------QSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-  176 (299)
Q Consensus       112 i~Gk~~Gr~L~~p~~~~---~RPttd~Vrealfn~L-----------~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-  176 (299)
                      +.|+..|..+.++.+..   .||+++.+.+++++..           ....+   ...+.+|||+|||+|.++++++++ 
T Consensus        58 i~g~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~VLDiG~G~G~~~~~la~~~  134 (277)
T 1o54_A           58 VFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLD---VKEGDRIIDTGVGSGAMCAVLARAV  134 (277)
T ss_dssp             HTTSCTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHT
T ss_pred             hcCCCCCcEEEEcCCcEEEEeCCCHHHHHhhccccCCccCHHHHHHHHHHhC---CCCCCEEEEECCcCCHHHHHHHHHh
Confidence            34778899999888743   4999998776543321           11111   135789999999999999998887 


Q ss_pred             C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          177 G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       177 G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      | ..+|+++|+++.++ +.+++|++.+++.++++++.+|+.+.+        ..+.||+|++|||+..
T Consensus       135 ~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~D~V~~~~~~~~  193 (277)
T 1o54_A          135 GSSGKVFAYEKREEFA-KLAESNLTKWGLIERVTIKVRDISEGF--------DEKDVDALFLDVPDPW  193 (277)
T ss_dssp             TTTCEEEEECCCHHHH-HHHHHHHHHTTCGGGEEEECCCGGGCC--------SCCSEEEEEECCSCGG
T ss_pred             CCCcEEEEEECCHHHH-HHHHHHHHHcCCCCCEEEEECCHHHcc--------cCCccCEEEECCcCHH
Confidence            5 56899999999998 999999999988667899999987752        1357999999999763

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.33  E-value=6.4e-12  Score=108.12  Aligned_cols=94  Identities=17%  Similarity=0.251  Sum_probs=72.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~  209 (299)
                      .++...+.+.+...+....    ...+.+|||+|||+|.+++.++.+|+.+|+++|+|+.++ +.+++|+.      +++
T Consensus        30 ~~~~~~~~~~l~~~~~~~~----~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~------~~~   98 (200)
T 1ne2_A           30 YPTDASTAAYFLIEIYNDG----NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-ETAKRNCG------GVN   98 (200)
T ss_dssp             CCCCHHHHHHHHHHHHHHT----SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-HHHHHHCT------TSE
T ss_pred             cCCCHHHHHHHHHHHHhcC----CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHH-HHHHHhcC------CCE
Confidence            4555556666655554321    135789999999999999998888887899999999998 99999975      367


Q ss_pred             EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      ++++|+.++          .+.||+|++||||...
T Consensus        99 ~~~~d~~~~----------~~~~D~v~~~~p~~~~  123 (200)
T 1ne2_A           99 FMVADVSEI----------SGKYDTWIMNPPFGSV  123 (200)
T ss_dssp             EEECCGGGC----------CCCEEEEEECCCC---
T ss_pred             EEECcHHHC----------CCCeeEEEECCCchhc
Confidence            899998763          2689999999999763

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.32  E-value=2.5e-12  Score=112.67  Aligned_cols=80  Identities=19%  Similarity=0.141  Sum_probs=66.6

Q ss_pred             CCCEEEEECCc-cchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSG-TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaG-SGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+||| +|.+++.++.++..+|+++|+|+.++ +.+++|++.++.  +++++++|+..+..      ...++||
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~--~v~~~~~d~~~~~~------~~~~~fD  125 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFF-EYARRNIERNNS--NVRLVKSNGGIIKG------VVEGTFD  125 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHH-HHHHHHHHHTTC--CCEEEECSSCSSTT------TCCSCEE
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHHhCC--CcEEEeCCchhhhh------cccCcee
Confidence            57899999999 99999998887445799999999998 999999999987  48899999643321      1237899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|++||||..
T Consensus       126 ~I~~npp~~~  135 (230)
T 3evz_A          126 VIFSAPPYYD  135 (230)
T ss_dssp             EEEECCCCC-
T ss_pred             EEEECCCCcC
Confidence            9999999964

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.29  E-value=1.1e-12  Score=117.38  Aligned_cols=86  Identities=19%  Similarity=0.111  Sum_probs=65.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHh---CCCCc---------------------
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWT---GFLDV---------------------  207 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr---Ga~~V~~VD~n~~Al~~~a~~N~~~~---g~~~~---------------------  207 (299)
                      .+.+|||+|||||.++++++.+   +..+|+++|+|+.++ +.+++|+..+   ++.++                     
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPL-ELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHH-HHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHH-HHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence            4679999999999999998876   234799999999998 9999999876   44322                     


Q ss_pred             ----EE-------------EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          208 ----SS-------------IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       208 ----~~-------------vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                          ++             ++++|+.+...... . ....+||+|++||||..
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~-~~~~~fD~Iv~npp~~~  180 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSA-V-LAGSAPDVVLTDLPYGE  180 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHH-H-HTTCCCSEEEEECCGGG
T ss_pred             hhhhhhhhccccccccccceeeccccccccccc-c-cCCCCceEEEeCCCeec
Confidence                45             88999877542100 0 01348999999999964

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.29  E-value=3.5e-11  Score=117.27  Aligned_cols=108  Identities=18%  Similarity=0.196  Sum_probs=82.9

Q ss_pred             eCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 022298          116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL  195 (299)
Q Consensus       116 ~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a  195 (299)
                      +.|.++.++.+.......+ ..+.++..+...      ..+.+|||+|||+|.+++.++.++ .+|++||+|+.++ +.+
T Consensus       258 ~~g~~f~~~~~~F~q~n~~-~~e~l~~~~~~~------~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai-~~A  328 (425)
T 2jjq_A          258 LDDVDYLIHPNSFFQTNSY-QAVNLVRKVSEL------VEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAI-EMA  328 (425)
T ss_dssp             ETTEEEEECTTSCCCSBHH-HHHHHHHHHHHH------CCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHH-HHH
T ss_pred             ECCEEEEEccccccccCHH-HHHHHHHHhhcc------CCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHH-HHH
Confidence            3577777777655554433 334444443221      257899999999999999887765 4899999999998 999


Q ss_pred             HHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          196 IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       196 ~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++|++.+++.  ++++++|+.+++         ..+||+|++||||..
T Consensus       329 ~~n~~~ngl~--v~~~~~d~~~~~---------~~~fD~Vv~dPPr~g  365 (425)
T 2jjq_A          329 RRNVEINNVD--AEFEVASDREVS---------VKGFDTVIVDPPRAG  365 (425)
T ss_dssp             HHHHHHHTCC--EEEEECCTTTCC---------CTTCSEEEECCCTTC
T ss_pred             HHHHHHcCCc--EEEEECChHHcC---------ccCCCEEEEcCCccc
Confidence            9999999985  899999998764         137999999999864

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.29  E-value=1.6e-11  Score=118.11  Aligned_cols=99  Identities=26%  Similarity=0.303  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      .++++..+.+.+.+.+...     ...+.+|||+|||+|.+++.++.+|+ +|++||+|+.++ +.+++|++.+++.  +
T Consensus       212 ~d~~t~~ll~~l~~~l~~~-----~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al-~~A~~n~~~~~~~--v  282 (381)
T 3dmg_A          212 VDPASLLLLEALQERLGPE-----GVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASV-LSLQKGLEANALK--A  282 (381)
T ss_dssp             CCHHHHHHHHHHHHHHCTT-----TTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHH-HHHHHHHHHTTCC--C
T ss_pred             CCHHHHHHHHHHHHhhccc-----CCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHHcCCC--e
Confidence            4677788888887766311     13578999999999999999999987 799999999998 9999999999874  6


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +++.+|+.+...       ..++||+|++||||..
T Consensus       283 ~~~~~D~~~~~~-------~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          283 QALHSDVDEALT-------EEARFDIIVTNPPFHV  310 (381)
T ss_dssp             EEEECSTTTTSC-------TTCCEEEEEECCCCCT
T ss_pred             EEEEcchhhccc-------cCCCeEEEEECCchhh
Confidence            889999887641       1368999999999986

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.28  E-value=3.2e-11  Score=101.18  Aligned_cols=98  Identities=18%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      +|++.+.+++.+.+.+..       ..+.+|||+|||+|.+++.++.++ .+|+++|+|+.++ +.+++|++.++..+++
T Consensus        14 ~~~~~~~~~~~~~~~~~~-------~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~-~~a~~~~~~~~~~~~~   84 (192)
T 1l3i_A           14 PGPTAMEVRCLIMCLAEP-------GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAI-STTEMNLQRHGLGDNV   84 (192)
T ss_dssp             CCCCCHHHHHHHHHHHCC-------CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHH-HHHHHHHHHTTCCTTE
T ss_pred             CCCChHHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHH-HHHHHHHHHcCCCcce
Confidence            468999999988887753       357899999999999999988888 6899999999998 9999999999886668


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      +++++|+.+.+..       .+.||+|++++++.
T Consensus        85 ~~~~~d~~~~~~~-------~~~~D~v~~~~~~~  111 (192)
T 1l3i_A           85 TLMEGDAPEALCK-------IPDIDIAVVGGSGG  111 (192)
T ss_dssp             EEEESCHHHHHTT-------SCCEEEEEESCCTT
T ss_pred             EEEecCHHHhccc-------CCCCCEEEECCchH
Confidence            9999998874321       25899999999864

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.28  E-value=3.2e-11  Score=100.66  Aligned_cols=94  Identities=18%  Similarity=0.171  Sum_probs=79.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      .+++.+.+.+.+++.+..       ..+.+|||+|||+|.+++.++. +..+|+++|+++.++ +.+++|++.+++. ++
T Consensus        16 ~~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~-~~a~~~~~~~~~~-~~   85 (183)
T 2yxd_A           16 VPITKEEIRAVSIGKLNL-------NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAI-EVTKQNLAKFNIK-NC   85 (183)
T ss_dssp             BCCCCHHHHHHHHHHHCC-------CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHH-HHHHHHHHHTTCC-SE
T ss_pred             CCcCHHHHHHHHHHHcCC-------CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHH-HHHHHHHHHcCCC-cE
Confidence            478888899888888753       3578999999999999998877 556899999999998 9999999999884 58


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      +++++|+.+.+.        .+.||+|++++|
T Consensus        86 ~~~~~d~~~~~~--------~~~~D~i~~~~~  109 (183)
T 2yxd_A           86 QIIKGRAEDVLD--------KLEFNKAFIGGT  109 (183)
T ss_dssp             EEEESCHHHHGG--------GCCCSEEEECSC
T ss_pred             EEEECCcccccc--------CCCCcEEEECCc
Confidence            999999887431        268999999998

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.28  E-value=6.5e-12  Score=107.49  Aligned_cols=80  Identities=13%  Similarity=0.052  Sum_probs=69.2

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|.+++.++.+  +..+|+++|+++.++ +.+++|++.+++.++++++++|+.++...      ..++|
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~f   94 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAI-ANTTKKLTDLNLIDRVTLIKDGHQNMDKY------IDCPV   94 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHH-HHHHHHHHHTTCGGGEEEECSCGGGGGGT------CCSCE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCeEEEECCHHHHhhh------ccCCc
Confidence            5789999999999999998876  345899999999998 99999999998866799999998776421      24689


Q ss_pred             eEEEEcCCC
Q 022298          233 DYMSVTPPY  241 (299)
Q Consensus       233 DlI~iDPPY  241 (299)
                      |+|++||||
T Consensus        95 D~v~~~~~~  103 (197)
T 3eey_A           95 KAVMFNLGY  103 (197)
T ss_dssp             EEEEEEESB
T ss_pred             eEEEEcCCc
Confidence            999999998

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.28  E-value=2.1e-11  Score=106.51  Aligned_cols=94  Identities=14%  Similarity=0.046  Sum_probs=77.4

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 022298          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (299)
Q Consensus       132 ttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi  211 (299)
                      +...++..+++.+..       ..+.+|||+|||+|.++++++.++ .+|+++|+|+.++ +.+++|++.+++.++++++
T Consensus        39 ~~~~~~~~~l~~l~~-------~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~-~~a~~~~~~~g~~~~v~~~  109 (204)
T 3njr_A           39 TKSPMRALTLAALAP-------RRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRI-ENIQKNIDTYGLSPRMRAV  109 (204)
T ss_dssp             CCHHHHHHHHHHHCC-------CTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEE
T ss_pred             CcHHHHHHHHHhcCC-------CCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHH-HHHHHHHHHcCCCCCEEEE
Confidence            445677777777653       357899999999999999998885 4799999999998 9999999999987579999


Q ss_pred             EcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          212 TVRVETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       212 ~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                      ++|+.+.+..       ...||+|++++..
T Consensus       110 ~~d~~~~~~~-------~~~~D~v~~~~~~  132 (204)
T 3njr_A          110 QGTAPAALAD-------LPLPEAVFIGGGG  132 (204)
T ss_dssp             ESCTTGGGTT-------SCCCSEEEECSCC
T ss_pred             eCchhhhccc-------CCCCCEEEECCcc
Confidence            9999875421       2579999999844

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.27  E-value=5.3e-12  Score=130.20  Aligned_cols=102  Identities=21%  Similarity=0.243  Sum_probs=80.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC------------------------------
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC------------------------------  178 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa------------------------------  178 (299)
                      .-|..+.+..++......       ..+..+||+|||||++.|||+.+++                              
T Consensus       171 ~apl~e~LAa~ll~~~~~-------~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~e  243 (703)
T 3v97_A          171 IAPIKETLAAAIVMRSGW-------QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAE  243 (703)
T ss_dssp             CCSSCHHHHHHHHHHTTC-------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHhhCC-------CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHH
Confidence            346667777777665432       2467899999999999999987542                              


Q ss_pred             -------------CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          179 -------------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       179 -------------~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                                   .+++++|+|+.++ +.++.|++..|+.+.+++.++|+.++...     ...+.||+|++||||+.
T Consensus       244 a~~~~~~~~~~~~~~i~G~Did~~av-~~A~~N~~~agv~~~i~~~~~D~~~~~~~-----~~~~~~d~Iv~NPPYG~  315 (703)
T 3v97_A          244 AQTRARKGLAEYSSHFYGSDSDARVI-QRARTNARLAGIGELITFEVKDVAQLTNP-----LPKGPYGTVLSNPPYGE  315 (703)
T ss_dssp             HHHHHHHHHHHCCCCEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEECCGGGCCCS-----CTTCCCCEEEECCCCCC
T ss_pred             HHHHhhhccccCCccEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChhhCccc-----cccCCCCEEEeCCCccc
Confidence                         3699999999998 99999999999988899999999875210     01237999999999985

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.26  E-value=2.3e-11  Score=111.80  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=89.8

Q ss_pred             ccccceEEEEeeeeCCeEEecCCCCCCCCCHH----HHHHHHHHH-HHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC
Q 022298          103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMME----VVKGAAFDI-LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG  177 (299)
Q Consensus       103 ~~~~~~mrIi~Gk~~Gr~L~~p~~~~~RPttd----~Vrealfn~-L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG  177 (299)
                      +...+.++|+.+...|+.|.... .  +.+++    ...+.+... +...      ..+.+|||+|||+|.++.++++++
T Consensus        27 ~s~~~~i~v~~~~~~g~~L~ldg-~--~q~~~~d~~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~   97 (281)
T 1mjf_A           27 LSKYQKIEVYETEGFGRLLALDG-T--VQLVTLGERSYHEPLVHPAMLAH------PKPKRVLVIGGGDGGTVREVLQHD   97 (281)
T ss_dssp             ECSSCEEEEEEESSSCEEEEETT-E--EEEETTTTHHHHHHHHHHHHHHS------SCCCEEEEEECTTSHHHHHHTTSC
T ss_pred             eCCCccEEEEECCCccEEEEECC-E--eeeccccchHHHHHHHHHHHhhC------CCCCeEEEEcCCcCHHHHHHHhCC
Confidence            34455678888887788877653 1  22222    245555542 2111      246899999999999999998887


Q ss_pred             CCEEEEEeCCHHHHHHHHHHHHHHh--CC--------CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          178 CSEVHFVEMDPWVVSNVLIPNLEWT--GF--------LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       178 a~~V~~VD~n~~Al~~~a~~N~~~~--g~--------~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      ..+|++||+|+.++ +.+++|+ .+  ++        .++++++.+|+.+++..       .++||+|++|+|+.
T Consensus        98 ~~~v~~vDid~~~i-~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-------~~~fD~Ii~d~~~~  163 (281)
T 1mjf_A           98 VDEVIMVEIDEDVI-MVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------NRGFDVIIADSTDP  163 (281)
T ss_dssp             CSEEEEEESCHHHH-HHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-------CCCEEEEEEECCCC
T ss_pred             CCEEEEEECCHHHH-HHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-------cCCeeEEEECCCCC
Confidence            77999999999998 9999998 44  32        35689999999887643       36899999999863

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.26  E-value=1.9e-11  Score=103.55  Aligned_cols=80  Identities=11%  Similarity=0.023  Sum_probs=65.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||+|.+++.++.++ .+|+++|+|+.++ +.+++|++.+++ +++++++.|+..+...      ..++||+
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l-~~a~~~~~~~~~-~~v~~~~~~~~~l~~~------~~~~fD~   92 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQAL-GKTSQRLSDLGI-ENTELILDGHENLDHY------VREPIRA   92 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHH-HHHHHHHHHHTC-CCEEEEESCGGGGGGT------CCSCEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHH-HHHHHHHHHcCC-CcEEEEeCcHHHHHhh------ccCCcCE
Confidence            57899999999999999988884 5799999999998 999999999998 5688998877654211      2468999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++|++|..
T Consensus        93 v~~~~~~~~  101 (185)
T 3mti_A           93 AIFNLGYLP  101 (185)
T ss_dssp             EEEEEC---
T ss_pred             EEEeCCCCC
Confidence            999987754

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.25  E-value=7.4e-11  Score=101.66  Aligned_cols=95  Identities=16%  Similarity=0.190  Sum_probs=76.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      +.+|++..+.+.+...+         ..+.+|||+|||+|.+++.++..|..+|+++|+++.++ +.+++|++.++..+ 
T Consensus        42 ~~~~~~~~~~~~l~~~~---------~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-  110 (205)
T 3grz_A           42 GNHQTTQLAMLGIERAM---------VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESM-TAAEENAALNGIYD-  110 (205)
T ss_dssp             CCHHHHHHHHHHHHHHC---------SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCC-
T ss_pred             CCCccHHHHHHHHHHhc---------cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCc-
Confidence            34555555554443322         24789999999999999998888887999999999998 99999999999876 


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      ++++++|+.++.         .++||+|++++|+.
T Consensus       111 v~~~~~d~~~~~---------~~~fD~i~~~~~~~  136 (205)
T 3grz_A          111 IALQKTSLLADV---------DGKFDLIVANILAE  136 (205)
T ss_dssp             CEEEESSTTTTC---------CSCEEEEEEESCHH
T ss_pred             eEEEeccccccC---------CCCceEEEECCcHH
Confidence            889999987642         37899999999976

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.24  E-value=4e-11  Score=103.42  Aligned_cols=95  Identities=16%  Similarity=0.053  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 022298          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (299)
Q Consensus       132 ttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~v  210 (299)
                      +.+.++..+++.+..       .++.+|||+|||+|.+++.++.++ ..+|+++|+|+.++ +.+++|++.+++ +++++
T Consensus        24 ~~~~i~~~~l~~l~~-------~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~v~~   94 (204)
T 3e05_A           24 TKQEVRAVTLSKLRL-------QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYL-GFIRDNLKKFVA-RNVTL   94 (204)
T ss_dssp             CCHHHHHHHHHHTTC-------CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHH-HHHHHHHHHHTC-TTEEE
T ss_pred             ChHHHHHHHHHHcCC-------CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCC-CcEEE
Confidence            667787777777653       357899999999999999988876 46899999999998 999999999998 56899


Q ss_pred             EEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          211 HTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       211 i~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      +++|+.+.+.       ..+.||+|++++++.
T Consensus        95 ~~~d~~~~~~-------~~~~~D~i~~~~~~~  119 (204)
T 3e05_A           95 VEAFAPEGLD-------DLPDPDRVFIGGSGG  119 (204)
T ss_dssp             EECCTTTTCT-------TSCCCSEEEESCCTT
T ss_pred             EeCChhhhhh-------cCCCCCEEEECCCCc
Confidence            9999876542       126799999999865

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.21  E-value=3.9e-11  Score=115.45  Aligned_cols=77  Identities=23%  Similarity=0.185  Sum_probs=68.5

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      +++++|||+|||||.+++.|+..||.+|++||.++ .+ +.+++|++.+|+.++++++++|+.++.        ..++||
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~-~~a~~~~~~n~~~~~i~~i~~~~~~~~--------lpe~~D  151 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IW-QQAREVVRFNGLEDRVHVLPGPVETVE--------LPEQVD  151 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-TH-HHHHHHHHHTTCTTTEEEEESCTTTCC--------CSSCEE
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HH-HHHHHHHHHcCCCceEEEEeeeeeeec--------CCcccc
Confidence            46899999999999999999999999999999997 55 899999999999999999999998752        246899


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|+.++-
T Consensus       152 vivsE~~  158 (376)
T 4hc4_A          152 AIVSEWM  158 (376)
T ss_dssp             EEECCCC
T ss_pred             EEEeecc
Confidence            9998764

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.21  E-value=6.7e-11  Score=109.62  Aligned_cols=130  Identities=12%  Similarity=0.090  Sum_probs=90.3

Q ss_pred             ccccccceEEEEeeeeCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CC
Q 022298          101 EERTTHRLLQVLGGKARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC  178 (299)
Q Consensus       101 ~p~~~~~~mrIi~Gk~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga  178 (299)
                      .-+...+-++|+.+...|+.|.+.... .+++..-...+.+........     ..+.+|||+|||+|.++.+++++ +.
T Consensus        40 ~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~-----~~~~~VLdiG~G~G~~~~~l~~~~~~  114 (296)
T 1inl_A           40 SGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLH-----PNPKKVLIIGGGDGGTLREVLKHDSV  114 (296)
T ss_dssp             EEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHS-----SSCCEEEEEECTTCHHHHHHTTSTTC
T ss_pred             EEECCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHHhcC-----CCCCEEEEEcCCcCHHHHHHHhcCCC
Confidence            334445667888888778888775321 223332234455544321110     24689999999999999999887 66


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          179 SEVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       179 ~~V~~VD~n~~Al~~~a~~N~~~~--g~-~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      .+|++||+|+.++ +.+++|+..+  ++ .++++++.+|+.+++..      ..++||+|++|+|..
T Consensus       115 ~~v~~vDid~~~~-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~------~~~~fD~Ii~d~~~~  174 (296)
T 1inl_A          115 EKAILCEVDGLVI-EAARKYLKQTSCGFDDPRAEIVIANGAEYVRK------FKNEFDVIIIDSTDP  174 (296)
T ss_dssp             SEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG------CSSCEEEEEEEC---
T ss_pred             CEEEEEECCHHHH-HHHHHHhHhhccccCCCceEEEECcHHHHHhh------CCCCceEEEEcCCCc
Confidence            7899999999998 9999998652  33 35699999999887632      246899999999754

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.21  E-value=1e-10  Score=104.11  Aligned_cols=80  Identities=16%  Similarity=0.205  Sum_probs=69.8

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|.+++.++.+ | ..+|+++|+++.++ +.+++|++.+++.++++++++|+.+.+        ..+.|
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~  163 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFA-KLAWENIKWAGFDDRVTIKLKDIYEGI--------EEENV  163 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHTCTTTEEEECSCGGGCC--------CCCSE
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHH-HHHHHHHHHcCCCCceEEEECchhhcc--------CCCCc
Confidence            5789999999999999998887 4 56899999999998 999999999998877999999988653        24679


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+|++|||...
T Consensus       164 D~v~~~~~~~~  174 (255)
T 3mb5_A          164 DHVILDLPQPE  174 (255)
T ss_dssp             EEEEECSSCGG
T ss_pred             CEEEECCCCHH
Confidence            99999999653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.20  E-value=2.3e-11  Score=103.06  Aligned_cols=85  Identities=15%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      .+||.++.+.+.+ +...        ..+.+|||+|||+|.++++++.++  +|+++|+|+.++ +.          .++
T Consensus         5 ~P~~~~~~l~~~l-~~~~--------~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~-~~----------~~~   62 (170)
T 3q87_B            5 EPGEDTYTLMDAL-EREG--------LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRAL-ES----------HRG   62 (170)
T ss_dssp             CCCHHHHHHHHHH-HHHT--------CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHH-HT----------CSS
T ss_pred             CcCccHHHHHHHH-Hhhc--------CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHH-hc----------ccC
Confidence            3577777666552 3321        356799999999999999988888  899999999997 55          234


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      ++++++|+.+.+        ..++||+|++||||.
T Consensus        63 ~~~~~~d~~~~~--------~~~~fD~i~~n~~~~   89 (170)
T 3q87_B           63 GNLVRADLLCSI--------NQESVDVVVFNPPYV   89 (170)
T ss_dssp             SCEEECSTTTTB--------CGGGCSEEEECCCCB
T ss_pred             CeEEECChhhhc--------ccCCCCEEEECCCCc
Confidence            778999987643        136899999999997

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.20  E-value=7.5e-11  Score=107.60  Aligned_cols=84  Identities=15%  Similarity=0.197  Sum_probs=69.4

Q ss_pred             CCCEEEEECCccchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS--rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|..++.++.  .|..+|+++|+++.++ +.+++|++.+|+. +++++++|+.++.....   ...+.|
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l-~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~---~~~~~f  157 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRT-KALKSNINRMGVL-NTIIINADMRKYKDYLL---KNEIFF  157 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEESCHHHHHHHHH---HTTCCE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHH-HHHHHHHHHhCCC-cEEEEeCChHhcchhhh---hccccC
Confidence            578999999999999988776  4556899999999998 9999999999986 58999999987653210   013689


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+|++||||..
T Consensus       158 D~Vl~d~Pcs~  168 (274)
T 3ajd_A          158 DKILLDAPCSG  168 (274)
T ss_dssp             EEEEEEECCC-
T ss_pred             CEEEEcCCCCC
Confidence            99999999964

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.19  E-value=2.9e-11  Score=108.78  Aligned_cols=75  Identities=16%  Similarity=0.143  Sum_probs=65.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||||.+++.++..| +.+|+++|+|+.++ +.+++|++.+|+.++++++.+|+.+.+..       ..+||
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-------~~~~D   86 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPY-QSAVKNVEAHGLKEKIQVRLANGLAAFEE-------TDQVS   86 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEECchhhhccc-------CcCCC
Confidence            47799999999999999999887 56899999999998 99999999999988899999998765421       12699


Q ss_pred             EEEE
Q 022298          234 YMSV  237 (299)
Q Consensus       234 lI~i  237 (299)
                      +|++
T Consensus        87 ~Ivi   90 (225)
T 3kr9_A           87 VITI   90 (225)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.19  E-value=7.7e-11  Score=106.38  Aligned_cols=95  Identities=23%  Similarity=0.224  Sum_probs=77.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       127 ~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      .++.||+..+.+.+-..+         ..+.+|||+|||+|.+++.++.+|+ +|+++|+|+.++ +.+++|++.+++. 
T Consensus       101 tg~~~tt~~~~~~l~~~~---------~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v-~~a~~n~~~~~~~-  168 (254)
T 2nxc_A          101 TGHHETTRLALKALARHL---------RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVL-PQAEANAKRNGVR-  168 (254)
T ss_dssp             -CCSHHHHHHHHHHHHHC---------CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGH-HHHHHHHHHTTCC-
T ss_pred             CCCCHHHHHHHHHHHHhc---------CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHH-HHHHHHHHHcCCc-
Confidence            346788777766654332         2478999999999999999988998 899999999998 9999999999875 


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                       ++++++|+.+.+.        .++||+|++|+++.
T Consensus       169 -v~~~~~d~~~~~~--------~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          169 -PRFLEGSLEAALP--------FGPFDLLVANLYAE  195 (254)
T ss_dssp             -CEEEESCHHHHGG--------GCCEEEEEEECCHH
T ss_pred             -EEEEECChhhcCc--------CCCCCEEEECCcHH
Confidence             7889999877431        36899999998764

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.19  E-value=1.4e-10  Score=108.15  Aligned_cols=130  Identities=18%  Similarity=0.165  Sum_probs=90.5

Q ss_pred             ccccccccceEEEEeeeeCCeEEecCCCCCCCCCHH---HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH
Q 022298           99 SQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMME---VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS  175 (299)
Q Consensus        99 ~~~p~~~~~~mrIi~Gk~~Gr~L~~p~~~~~RPttd---~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS  175 (299)
                      .+.-+...+-++|+.+...|+.|....   .+++++   ..-..++..+....    ...+.+|||+|||+|.+++++++
T Consensus        43 l~~~~s~~q~i~v~~~~~~g~~L~ldg---~~~~~~~de~~y~e~l~~~~l~~----~~~~~~VLdiG~G~G~~~~~l~~  115 (304)
T 2o07_A           43 LHHRRSRYQDILVFRSKTYGNVLVLDG---VIQCTERDEFSYQEMIANLPLCS----HPNPRKVLIIGGGDGGVLREVVK  115 (304)
T ss_dssp             EEEEECSSSEEEEEEESSSCEEEEETT---EEEEETTTHHHHHHHHHHHHHTT----SSSCCEEEEEECTTSHHHHHHTT
T ss_pred             EEEEECCCcEEEEEEcCCCceEEEECC---EEEeecccchHHHHHHHHHHHhh----CCCCCEEEEECCCchHHHHHHHH
Confidence            344444556788889888899888752   222222   12111222221110    12468999999999999999988


Q ss_pred             cC-CCEEEEEeCCHHHHHHHHHHHHHH--hCC-CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          176 RG-CSEVHFVEMDPWVVSNVLIPNLEW--TGF-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       176 rG-a~~V~~VD~n~~Al~~~a~~N~~~--~g~-~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      ++ ..+|++||+|+.++ +.+++|+..  .++ .++++++.+|+.+++..      ..++||+|++|+|..
T Consensus       116 ~~~~~~v~~vDid~~~i-~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~------~~~~fD~Ii~d~~~~  179 (304)
T 2o07_A          116 HPSVESVVQCEIDEDVI-QVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ------NQDAFDVIITDSSDP  179 (304)
T ss_dssp             CTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT------CSSCEEEEEEECC--
T ss_pred             cCCCCEEEEEECCHHHH-HHHHHHhHHhhcccCCCcEEEEECcHHHHHhh------CCCCceEEEECCCCC
Confidence            74 57899999999998 999999876  344 35699999999987643      246899999999864

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.19  E-value=6.7e-11  Score=112.73  Aligned_cols=81  Identities=17%  Similarity=0.174  Sum_probs=69.0

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ..+.+|||+| |+|.++++++.+|. .+|+++|+|+.++ +.+++|++.+|+. +++++++|+.+.+..     ...+.|
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l-~~a~~~~~~~g~~-~v~~~~~D~~~~l~~-----~~~~~f  242 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLT-KFIEKAANEIGYE-DIEIFTFDLRKPLPD-----YALHKF  242 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHH-HHHHHHHHHHTCC-CEEEECCCTTSCCCT-----TTSSCB
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-CEEEEEChhhhhchh-----hccCCc
Confidence            3578999999 99999999988876 6899999999998 9999999999986 699999999874311     013579


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+|++||||.
T Consensus       243 D~Vi~~~p~~  252 (373)
T 2qm3_A          243 DTFITDPPET  252 (373)
T ss_dssp             SEEEECCCSS
T ss_pred             cEEEECCCCc
Confidence            9999999995

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.18  E-value=7.7e-11  Score=116.04  Aligned_cols=80  Identities=20%  Similarity=0.264  Sum_probs=69.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++++  +..+|+++|+++.++ +.+++|++.+|+.+ +.++++|+.++....      .+.|
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl-~~~~~n~~r~g~~n-v~v~~~Da~~l~~~~------~~~F  176 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRA-KILSENIERWGVSN-AIVTNHAPAELVPHF------SGFF  176 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHH-HHHHHHHHHHTCSS-EEEECCCHHHHHHHH------TTCE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCc-eEEEeCCHHHhhhhc------cccC
Confidence            5789999999999999988764  445899999999998 99999999999975 889999998875433      3689


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+|++||||.
T Consensus       177 D~Il~DaPCS  186 (456)
T 3m4x_A          177 DRIVVDAPCS  186 (456)
T ss_dssp             EEEEEECCCC
T ss_pred             CEEEECCCCC
Confidence            9999999974

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.17  E-value=3.9e-11  Score=109.19  Aligned_cols=75  Identities=13%  Similarity=0.058  Sum_probs=65.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++..| +.+|+++|+|+.++ +.+++|++.+|+.++++++++|+.+.+.       ...+||
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-~~A~~N~~~~gl~~~I~v~~gD~l~~~~-------~~~~~D   92 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPF-QSAQKQVRSSGLTEQIDVRKGNGLAVIE-------KKDAID   92 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCC-------GGGCCC
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEecchhhccC-------cccccc
Confidence            57899999999999999998887 56899999999998 9999999999998889999999887642       123599


Q ss_pred             EEEE
Q 022298          234 YMSV  237 (299)
Q Consensus       234 lI~i  237 (299)
                      +|++
T Consensus        93 ~Ivi   96 (244)
T 3gnl_A           93 TIVI   96 (244)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.17  E-value=4.1e-11  Score=108.16  Aligned_cols=75  Identities=16%  Similarity=0.152  Sum_probs=65.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||||.+++.++.+| +.+|+++|+|+.++ +.+++|++.+|+.++++++++|+.+.+.       ...+||
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al-~~A~~N~~~~gl~~~I~~~~gD~l~~~~-------~~~~~D   92 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPY-QSALKNVSEHGLTSKIDVRLANGLSAFE-------EADNID   92 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCC-------GGGCCC
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhccc-------cccccC
Confidence            57899999999999999998887 56899999999998 9999999999999889999999887642       123699


Q ss_pred             EEEE
Q 022298          234 YMSV  237 (299)
Q Consensus       234 lI~i  237 (299)
                      +|++
T Consensus        93 ~Ivi   96 (230)
T 3lec_A           93 TITI   96 (230)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.16  E-value=2e-10  Score=107.84  Aligned_cols=123  Identities=15%  Similarity=0.134  Sum_probs=87.8

Q ss_pred             ccceEEEEeeeeCCeEEecCCC-CCCCCCHHHHHHHHHHH-HHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEE
Q 022298          105 THRLLQVLGGKARRKKLLSPKG-MDVRPMMEVVKGAAFDI-LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEV  181 (299)
Q Consensus       105 ~~~~mrIi~Gk~~Gr~L~~p~~-~~~RPttd~Vrealfn~-L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V  181 (299)
                      ..+-++++...+.|+.|.+... ..+++..-...|.+... +...      ..+.+|||+|||+|.++++++.+ +..+|
T Consensus        70 ~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v  143 (321)
T 2pt6_A           70 KYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVS------KEPKNVLVVGGGDGGIIRELCKYKSVENI  143 (321)
T ss_dssp             SSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEEECTTCHHHHHHTTCTTCCEE
T ss_pred             CCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcC------CCCCEEEEEcCCccHHHHHHHHcCCCCEE
Confidence            3445667777777888876432 12344422334444332 1111      24689999999999999998876 56789


Q ss_pred             EEEeCCHHHHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          182 HFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       182 ~~VD~n~~Al~~~a~~N~~~~--g~-~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      ++||+|+.++ +.+++|+..+  ++ .++++++++|+.+++...      .++||+|++|++
T Consensus       144 ~~vDis~~~l-~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~~fDvIi~d~~  198 (321)
T 2pt6_A          144 DICEIDETVI-EVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TNTYDVIIVDSS  198 (321)
T ss_dssp             EEEESCHHHH-HHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CSCEEEEEEECC
T ss_pred             EEEECCHHHH-HHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------CCCceEEEECCc
Confidence            9999999998 9999998762  33 356999999999876532      468999999994

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.16  E-value=2.2e-10  Score=99.84  Aligned_cols=86  Identities=13%  Similarity=0.096  Sum_probs=70.5

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++.+  +..+|+++|+++.++ +.+++|++..++.++++++++|+.+.+..... ....++|
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~~~f  141 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKST-ALAKEYWEKAGLSDKIGLRLSPAKDTLAELIH-AGQAWQY  141 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHT-TTCTTCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeCCHHHHHHHhhh-ccCCCCc
Confidence            4679999999999999988775  245899999999998 99999999999988899999999887654320 0001689


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+||+|++..
T Consensus       142 D~v~~~~~~~  151 (225)
T 3tr6_A          142 DLIYIDADKA  151 (225)
T ss_dssp             EEEEECSCGG
T ss_pred             cEEEECCCHH
Confidence            9999999843

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.15  E-value=9.7e-11  Score=115.54  Aligned_cols=79  Identities=22%  Similarity=0.190  Sum_probs=68.5

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|..++.++++  +..+|+++|+|+.++ +.+++|++.+|+.  +.++++|+.++....      .+.|
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l-~~a~~n~~r~G~~--v~~~~~Da~~l~~~~------~~~F  171 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRV-RGLLENVERWGAP--LAVTQAPPRALAEAF------GTYF  171 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHCCC--CEEECSCHHHHHHHH------CSCE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCe--EEEEECCHHHhhhhc------cccC
Confidence            5789999999999999998865  335899999999998 9999999999985  789999998875432      3689


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+|++||||.
T Consensus       172 D~Il~D~PcS  181 (464)
T 3m6w_A          172 HRVLLDAPCS  181 (464)
T ss_dssp             EEEEEECCCC
T ss_pred             CEEEECCCcC
Confidence            9999999994

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.15  E-value=4.1e-10  Score=99.81  Aligned_cols=81  Identities=15%  Similarity=0.097  Sum_probs=69.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH-HHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE-RAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~-~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++..+ ..+|++||+++.++ +.+++|++..++.++++++.+|+.+.+. ..      .++|
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~f  143 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMI-QYAKQNLATYHFENQVRIIEGNALEQFENVN------DKVY  143 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHH-HHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------TSCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------cCCc
Confidence            47899999999999999877732 45899999999998 9999999999987789999999988765 32      3689


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+||+|.+..
T Consensus       144 D~V~~~~~~~  153 (232)
T 3ntv_A          144 DMIFIDAAKA  153 (232)
T ss_dssp             EEEEEETTSS
T ss_pred             cEEEEcCcHH
Confidence            9999998754

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.15  E-value=1.6e-10  Score=110.46  Aligned_cols=79  Identities=16%  Similarity=0.118  Sum_probs=70.0

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ..+.+|||+|||+|.+++.++.+|+.+|++||++ .++ +.+++|++.+++.++++++++|+.++.        ..++||
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~D  131 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMA-DHARALVKANNLDHIVEVIEGSVEDIS--------LPEKVD  131 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTH-HHHHHHHHHTTCTTTEEEEESCGGGCC--------CSSCEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHH-HHHHHHHHHcCCCCeEEEEECchhhcC--------cCCcce
Confidence            4688999999999999999999999899999999 888 999999999999888999999998753        126899


Q ss_pred             EEEEcC-CCC
Q 022298          234 YMSVTP-PYT  242 (299)
Q Consensus       234 lI~iDP-PY~  242 (299)
                      +|++++ +|.
T Consensus       132 ~Iv~~~~~~~  141 (376)
T 3r0q_C          132 VIISEWMGYF  141 (376)
T ss_dssp             EEEECCCBTT
T ss_pred             EEEEcChhhc
Confidence            999998 444

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.15  E-value=8.1e-11  Score=110.71  Aligned_cols=108  Identities=17%  Similarity=0.242  Sum_probs=87.9

Q ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHH
Q 022298          117 RRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVL  195 (299)
Q Consensus       117 ~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a  195 (299)
                      .+..+....+...++..+...+.+.+.+..       ..+.+|||+|||+|.+++.++.++. .+|+++|+|+.++ +.+
T Consensus       165 ~~~~~~~~~gvf~~~~~d~~~~~ll~~l~~-------~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l-~~a  236 (343)
T 2pjd_A          165 DGLTVKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAV-EAS  236 (343)
T ss_dssp             TTEEEEECTTCTTSSSCCHHHHHHHHHSCT-------TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHH-HHH
T ss_pred             cceEEEecCCccCCCCCcHHHHHHHHhcCc-------CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHH-HHH
Confidence            355666777777788888888888877743       2367999999999999999988874 3799999999998 999


Q ss_pred             HHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          196 IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       196 ~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++|++.++..  .+++.+|+.++.         .++||+|+++|||..
T Consensus       237 ~~~~~~~~~~--~~~~~~d~~~~~---------~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          237 RATLAANGVE--GEVFASNVFSEV---------KGRFDMIISNPPFHD  273 (343)
T ss_dssp             HHHHHHTTCC--CEEEECSTTTTC---------CSCEEEEEECCCCCS
T ss_pred             HHHHHHhCCC--CEEEEccccccc---------cCCeeEEEECCCccc
Confidence            9999998875  457889987642         368999999999975

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.14  E-value=1.7e-10  Score=96.28  Aligned_cols=99  Identities=16%  Similarity=0.097  Sum_probs=78.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      ..|.+.++..+++.+..       .++.+|||+|||+|.+++.++.+ +..+|+++|+|+.++ +.+++|++.+++.+++
T Consensus         7 ~~t~~~~~~~~~~~~~~-------~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~   78 (178)
T 3hm2_A            7 QLTKQHVRALAISALAP-------KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERR-ERILSNAINLGVSDRI   78 (178)
T ss_dssp             CSHHHHHHHHHHHHHCC-------CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHH-HHHHHHHHTTTCTTSE
T ss_pred             cccHHHHHHHHHHHhcc-------cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHHHHHhCCCCCE
Confidence            45667788888777753       35779999999999999998876 345799999999998 9999999999987568


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                       ++++|+.+.+..      ..+.||+|+++.+...
T Consensus        79 -~~~~d~~~~~~~------~~~~~D~i~~~~~~~~  106 (178)
T 3hm2_A           79 -AVQQGAPRAFDD------VPDNPDVIFIGGGLTA  106 (178)
T ss_dssp             -EEECCTTGGGGG------CCSCCSEEEECC-TTC
T ss_pred             -EEecchHhhhhc------cCCCCCEEEECCcccH
Confidence             888988664421      1268999999998764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.14  E-value=3e-10  Score=99.51  Aligned_cols=86  Identities=13%  Similarity=0.129  Sum_probs=68.9

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++..  ...+|++||+++.++ +.+++|++.+++.++++++++|+.+++..... ....++|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~-~~~~~~f  135 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCA-AITQQMLNFAGLQDKVTILNGASQDLIPQLKK-KYDVDTL  135 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHGGGTTT-TSCCCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHH-HHHHHHHHHcCCCCceEEEECCHHHHHHHHHH-hcCCCce
Confidence            4689999999999999988763  234799999999998 99999999999987899999999887643210 0001589


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+||+|.+..
T Consensus       136 D~V~~d~~~~  145 (221)
T 3u81_A          136 DMVFLDHWKD  145 (221)
T ss_dssp             SEEEECSCGG
T ss_pred             EEEEEcCCcc
Confidence            9999998643

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.13  E-value=2.3e-10  Score=101.49  Aligned_cols=82  Identities=7%  Similarity=0.067  Sum_probs=68.7

Q ss_pred             CCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          156 PGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      +.+|||+|||+|..++.++.. + ..+|++||+|+.++ +.+++|++.+++. ++++++++|+.+++...     ..++|
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-----~~~~f  130 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQ-RQAKALFREAGYSPSRVRFLLSRPLDVMSRL-----ANDSY  130 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHH-HHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-----CTTCE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-----cCCCc
Confidence            349999999999999987763 2 35799999999998 9999999999997 78999999998876432     14689


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+||+|.+...
T Consensus       131 D~V~~d~~~~~  141 (221)
T 3dr5_A          131 QLVFGQVSPMD  141 (221)
T ss_dssp             EEEEECCCTTT
T ss_pred             CeEEEcCcHHH
Confidence            99999987543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.13  E-value=1.7e-10  Score=108.05  Aligned_cols=83  Identities=8%  Similarity=0.100  Sum_probs=68.2

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|..++.++..  +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.++....    .....|
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l-~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~----~~~~~f  175 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVSC-CELAEEDFLAVSPSD----PRYHEV  175 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEECCGGGSCTTC----GGGTTE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCChHhcCccc----cccCCC
Confidence            5789999999999999988763  456899999999998 99999999999864 899999987753210    001479


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |.|++||||..
T Consensus       176 D~Vl~D~PcSg  186 (309)
T 2b9e_A          176 HYILLDPSCSG  186 (309)
T ss_dssp             EEEEECCCCCC
T ss_pred             CEEEEcCCcCC
Confidence            99999999964

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.12  E-value=8.1e-10  Score=96.31  Aligned_cols=85  Identities=18%  Similarity=0.136  Sum_probs=69.9

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++.+ + ..+|+++|+++.++ +.+++|++..++.++++++++|+.+.+....  ....+.|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~f  134 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA-DIARSNIERANLNDRVEVRTGLALDSLQQIE--NEKYEPF  134 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHH--HTTCCCC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH--hcCCCCc
Confidence            4789999999999999988776 1 34799999999998 9999999999998889999999988765432  0112579


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+||+|++..
T Consensus       135 D~v~~d~~~~  144 (223)
T 3duw_A          135 DFIFIDADKQ  144 (223)
T ss_dssp             SEEEECSCGG
T ss_pred             CEEEEcCCcH
Confidence            9999999844

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.11  E-value=2.5e-10  Score=106.68  Aligned_cols=84  Identities=13%  Similarity=0.031  Sum_probs=68.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||+|.++++++.+. ..+|+++|+|+.++ +.+++|++.++  ++++++++|+.++...+..+  ...+||
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al-~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~--g~~~~D  100 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVL-RIAEEKLKEFS--DRVSLFKVSYREADFLLKTL--GIEKVD  100 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT--TCSCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcC--CcEEEEECCHHHHHHHHHhc--CCCCCC
Confidence            57899999999999999998873 45899999999998 99999999887  46999999987753222100  115799


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      .|++|||+..
T Consensus       101 ~Vl~D~gvSs  110 (301)
T 1m6y_A          101 GILMDLGVST  110 (301)
T ss_dssp             EEEEECSCCH
T ss_pred             EEEEcCccch
Confidence            9999999863

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.11  E-value=5e-10  Score=104.86  Aligned_cols=91  Identities=19%  Similarity=0.136  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D  214 (299)
                      ..++++...+..       .++.+|||+|||+|.+++.++.+|+.+|++||++ .++ +.+++|++.+++.++++++++|
T Consensus        25 ~y~~ai~~~~~~-------~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~-~~a~~~~~~~~~~~~i~~~~~d   95 (328)
T 1g6q_1           25 SYRNAIIQNKDL-------FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SII-EMAKELVELNGFSDKITLLRGK   95 (328)
T ss_dssp             HHHHHHHHHHHH-------HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THH-HHHHHHHHHTTCTTTEEEEESC
T ss_pred             HHHHHHHhhHhh-------cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHH-HHHHHHHHHcCCCCCEEEEECc
Confidence            355566555443       2578999999999999999999998899999999 577 8999999999998889999999


Q ss_pred             hhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          215 VETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       215 ~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                      +.++.       ...++||+|+++++.
T Consensus        96 ~~~~~-------~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           96 LEDVH-------LPFPKVDIIISEWMG  115 (328)
T ss_dssp             TTTSC-------CSSSCEEEEEECCCB
T ss_pred             hhhcc-------CCCCcccEEEEeCch
Confidence            87642       123689999999884

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.11  E-value=5e-10  Score=105.58  Aligned_cols=81  Identities=16%  Similarity=0.136  Sum_probs=69.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .++.+|||+|||+|.+++.++.+|+.+|++||+++ ++ +.+++|++.+++.++++++++|+.++.       ...++||
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~-~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D  133 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-IL-YQAMDIIRLNKLEDTITLIKGKIEEVH-------LPVEKVD  133 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTTSC-------CSCSCEE
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HH-HHHHHHHHHcCCCCcEEEEEeeHHHhc-------CCCCcEE
Confidence            35789999999999999999999988999999996 87 999999999998778999999987641       1236899


Q ss_pred             EEEEcC-CCCC
Q 022298          234 YMSVTP-PYTA  243 (299)
Q Consensus       234 lI~iDP-PY~~  243 (299)
                      +|++++ +|..
T Consensus       134 ~Ivs~~~~~~l  144 (340)
T 2fyt_A          134 VIISEWMGYFL  144 (340)
T ss_dssp             EEEECCCBTTB
T ss_pred             EEEEcCchhhc
Confidence            999998 5654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.10  E-value=3.1e-10  Score=103.82  Aligned_cols=105  Identities=14%  Similarity=0.067  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeC-CHHHHHHHHHHHH-----HHhC
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM-DPWVVSNVLIPNL-----EWTG  203 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~-n~~Al~~~a~~N~-----~~~g  203 (299)
                      .|.+..+.+.+......       ..+.+|||+|||+|.+++.++.+|+.+|+++|+ ++.++ +.+++|+     +.++
T Consensus        61 ~~~~~~l~~~l~~~~~~-------~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~-~~a~~n~~~N~~~~~~  132 (281)
T 3bzb_A           61 WSGARALADTLCWQPEL-------IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEIL-NSLESNIREHTANSCS  132 (281)
T ss_dssp             -CHHHHHHHHHHHCGGG-------TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHH-HHHHHHHHTTCC----
T ss_pred             ecHHHHHHHHHHhcchh-------cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHH-HHHHHHHHHhhhhhcc
Confidence            46666666666554332       357899999999999999988888878999999 89998 9999999     5555


Q ss_pred             CC----CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE-cCCCCC
Q 022298          204 FL----DVSSIHTVRVETFLERAEQFVGKDGPFDYMSV-TPPYTA  243 (299)
Q Consensus       204 ~~----~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i-DPPY~~  243 (299)
                      +.    +++++...|..+......... ..++||+|++ |..|..
T Consensus       133 ~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~fD~Ii~~dvl~~~  176 (281)
T 3bzb_A          133 SETVKRASPKVVPYRWGDSPDSLQRCT-GLQRFQVVLLADLLSFH  176 (281)
T ss_dssp             ------CCCEEEECCTTSCTHHHHHHH-SCSSBSEEEEESCCSCG
T ss_pred             cccCCCCCeEEEEecCCCccHHHHhhc-cCCCCCEEEEeCcccCh
Confidence            53    357777655433211110000 1368999987 988853

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.10  E-value=1.2e-10  Score=107.98  Aligned_cols=91  Identities=12%  Similarity=0.170  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~  213 (299)
                      +.+.+.+.+.+..       ..+.+|||+|||+|.++..++.+++ +|++||+|+.++ +.+++|++..+. ++++++++
T Consensus        28 ~~i~~~i~~~~~~-------~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~-~~a~~~~~~~~~-~~v~~~~~   97 (299)
T 2h1r_A           28 PGILDKIIYAAKI-------KSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMI-SEVKKRCLYEGY-NNLEVYEG   97 (299)
T ss_dssp             HHHHHHHHHHHCC-------CTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHH-HHHHHHHHHTTC-CCEEC---
T ss_pred             HHHHHHHHHhcCC-------CCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHHcCC-CceEEEEC
Confidence            3455566565542       3578999999999999998887765 799999999998 999999988877 45889999


Q ss_pred             chhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       214 D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      |+.++.         ...||+|++||||..
T Consensus        98 D~~~~~---------~~~~D~Vv~n~py~~  118 (299)
T 2h1r_A           98 DAIKTV---------FPKFDVCTANIPYKI  118 (299)
T ss_dssp             -CCSSC---------CCCCSEEEEECCGGG
T ss_pred             chhhCC---------cccCCEEEEcCCccc
Confidence            987642         257999999999974

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.09  E-value=2.2e-10  Score=113.29  Aligned_cols=80  Identities=20%  Similarity=0.262  Sum_probs=68.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++.+  +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.++....      .+.|
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l-~~~~~n~~r~g~~n-v~~~~~D~~~~~~~~------~~~f  188 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRV-KVLHANISRCGISN-VALTHFDGRVFGAAV------PEMF  188 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHH-HHHHHHHHHHTCCS-EEEECCCSTTHHHHS------TTCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCc-EEEEeCCHHHhhhhc------cccC
Confidence            5789999999999999988775  245899999999998 99999999999865 889999988764321      3689


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |.|++||||.
T Consensus       189 D~Il~D~PcS  198 (479)
T 2frx_A          189 DAILLDAPCS  198 (479)
T ss_dssp             EEEEEECCCC
T ss_pred             CEEEECCCcC
Confidence            9999999985

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.08  E-value=1.5e-10  Score=108.82  Aligned_cols=77  Identities=14%  Similarity=0.081  Sum_probs=64.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC------CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK  228 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa------~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~  228 (299)
                      .+.+|||+|||||.+.++++.+..      .+++++|+|+.++ ++++.|+...|.  .+.++++|+....        .
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~-~~a~~n~~~~g~--~~~i~~~D~l~~~--------~  198 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI-SLALVGADLQRQ--KMTLLHQDGLANL--------L  198 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH-HHHHHHHHHHTC--CCEEEESCTTSCC--------C
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHHHHhCCC--CceEEECCCCCcc--------c
Confidence            467999999999999999887532      5799999999998 999999998887  3678999976532        2


Q ss_pred             CCCeeEEEEcCCCC
Q 022298          229 DGPFDYMSVTPPYT  242 (299)
Q Consensus       229 ~~~fDlI~iDPPY~  242 (299)
                      ..+||+|++||||.
T Consensus       199 ~~~fD~Ii~NPPfg  212 (344)
T 2f8l_A          199 VDPVDVVISDLPVG  212 (344)
T ss_dssp             CCCEEEEEEECCCS
T ss_pred             cCCccEEEECCCCC
Confidence            36899999999975

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.08  E-value=8.7e-10  Score=96.32  Aligned_cols=84  Identities=17%  Similarity=0.052  Sum_probs=69.8

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC--C
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD--G  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~--~  230 (299)
                      .+.+|||+|||+|..++.++.. + ..+|+++|+++.++ +.+++|++.+++.++++++.+|+.+.+....   ...  +
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~---~~~~~~  144 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-ELGRPLWRQAEAEHKIDLRLKPALETLDELL---AAGEAG  144 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHH---HTTCTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHCCCCCeEEEEEcCHHHHHHHHH---hcCCCC
Confidence            5789999999999999987764 2 45899999999998 9999999999987789999999988765431   111  5


Q ss_pred             CeeEEEEcCCCC
Q 022298          231 PFDYMSVTPPYT  242 (299)
Q Consensus       231 ~fDlI~iDPPY~  242 (299)
                      .||+||+|+|..
T Consensus       145 ~~D~v~~d~~~~  156 (229)
T 2avd_A          145 TFDVAVVDADKE  156 (229)
T ss_dssp             CEEEEEECSCST
T ss_pred             CccEEEECCCHH
Confidence            899999999844

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.07  E-value=5e-10  Score=97.08  Aligned_cols=79  Identities=14%  Similarity=0.044  Sum_probs=66.5

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++.. + ..+|+++|+++.++ +.+++|++..++.++++++.+|+.+++..      ..+ |
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~-f  127 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNV-EHARRMLHDNGLIDRVELQVGDPLGIAAG------QRD-I  127 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHSGGGGEEEEESCHHHHHTT------CCS-E
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHCCCCceEEEEEecHHHHhcc------CCC-C
Confidence            4679999999999999987765 1 35899999999998 99999999999877899999999876532      135 9


Q ss_pred             eEEEEcCCC
Q 022298          233 DYMSVTPPY  241 (299)
Q Consensus       233 DlI~iDPPY  241 (299)
                      |+||+|.+.
T Consensus       128 D~v~~~~~~  136 (210)
T 3c3p_A          128 DILFMDCDV  136 (210)
T ss_dssp             EEEEEETTT
T ss_pred             CEEEEcCCh
Confidence            999999764

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.07  E-value=3.5e-10  Score=111.84  Aligned_cols=92  Identities=15%  Similarity=0.116  Sum_probs=75.4

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 022298          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (299)
Q Consensus       132 ttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi  211 (299)
                      .++...++++..+..       ..+.+|||+|||+|.+++.++.+|+.+|++||+++ ++ +.+++|++.+++.++++++
T Consensus       142 ~t~~~~~~il~~l~~-------~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l-~~A~~~~~~~gl~~~v~~~  212 (480)
T 3b3j_A          142 RTGTYQRAILQNHTD-------FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVI  212 (480)
T ss_dssp             HHHHHHHHHHHTGGG-------TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HH-HHHHHHHHHTTCTTTEEEE
T ss_pred             hHHHHHHHHHHhhhh-------cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HH-HHHHHHHHHcCCCCcEEEE
Confidence            344455556555532       35789999999999999999888888999999998 87 8999999999997789999


Q ss_pred             EcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          212 TVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       212 ~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      ++|+.++.        ..++||+|+++||
T Consensus       213 ~~d~~~~~--------~~~~fD~Ivs~~~  233 (480)
T 3b3j_A          213 PGKVEEVS--------LPEQVDIIISEPM  233 (480)
T ss_dssp             ESCTTTCC--------CSSCEEEEECCCC
T ss_pred             ECchhhCc--------cCCCeEEEEEeCc
Confidence            99987641        1358999999998

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.06  E-value=6.7e-10  Score=104.97  Aligned_cols=77  Identities=19%  Similarity=0.108  Sum_probs=68.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||+|.+++.++.+|+.+|++||+++ ++ +.+++|++.+++.++++++++|+.++.       ...++||+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l-~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD~  136 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-IS-DYAVKIVKANKLDHVVTIIKGKVEEVE-------LPVEKVDI  136 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSSCEEE
T ss_pred             CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HH-HHHHHHHHHcCCCCcEEEEECcHHHcc-------CCCCceEE
Confidence            5789999999999999999999988999999995 87 999999999999888999999998752       12478999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |+++++
T Consensus       137 Iis~~~  142 (349)
T 3q7e_A          137 IISEWM  142 (349)
T ss_dssp             EEECCC
T ss_pred             EEEccc
Confidence            999986

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.06  E-value=8.7e-10  Score=99.28  Aligned_cols=86  Identities=9%  Similarity=0.071  Sum_probs=69.1

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++.. + ..+|+++|+|+.++ +.+++|++..++.++++++.+|+.+++.....-....+.|
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-ELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            4679999999999999987765 1 34799999999998 9999999999987789999999988765431000003689


Q ss_pred             eEEEEcCCC
Q 022298          233 DYMSVTPPY  241 (299)
Q Consensus       233 DlI~iDPPY  241 (299)
                      |+||+|.+.
T Consensus       158 D~V~~d~~~  166 (247)
T 1sui_A          158 DFIFVDADK  166 (247)
T ss_dssp             SEEEECSCS
T ss_pred             EEEEEcCch
Confidence            999999864

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.06  E-value=1.1e-09  Score=103.28  Aligned_cols=90  Identities=16%  Similarity=0.108  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~  215 (299)
                      ..+++...+..       .++.+|||+|||+|.+++.++.+|+.+|++||+++ .+ +.+++|++.+++.++++++.+|+
T Consensus        38 y~~~i~~~l~~-------~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~-~~a~~~~~~~~l~~~v~~~~~d~  108 (348)
T 2y1w_A           38 YQRAILQNHTD-------FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKV  108 (348)
T ss_dssp             HHHHHHHTGGG-------TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCT
T ss_pred             HHHHHHhcccc-------CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HH-HHHHHHHHHcCCCCcEEEEEcch
Confidence            44555555543       36789999999999999999999988999999996 66 89999999999877899999998


Q ss_pred             hhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          216 ETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       216 ~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      .++.        ..++||+|+++++..
T Consensus       109 ~~~~--------~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A          109 EEVS--------LPEQVDIIISEPMGY  127 (348)
T ss_dssp             TTCC--------CSSCEEEEEECCCBT
T ss_pred             hhCC--------CCCceeEEEEeCchh
Confidence            7641        135799999999854

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=1.1e-09  Score=98.24  Aligned_cols=83  Identities=18%  Similarity=0.142  Sum_probs=69.7

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++.+ + ..+|++||+++.++ +.+++|++..++.++++++.+|+.+++...    ...++|
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~----~~~~~f  137 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA-QVARENLQLAGVDQRVTLREGPALQSLESL----GECPAF  137 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHTC----CSCCCC
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHhc----CCCCCe
Confidence            4789999999999999987765 2 45899999999998 999999999999878999999998876432    112489


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+||+|.+..
T Consensus       138 D~V~~d~~~~  147 (248)
T 3tfw_A          138 DLIFIDADKP  147 (248)
T ss_dssp             SEEEECSCGG
T ss_pred             EEEEECCchH
Confidence            9999998754

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.05  E-value=4.5e-10  Score=104.83  Aligned_cols=80  Identities=15%  Similarity=0.068  Sum_probs=68.0

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++.+  +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.++..       ..+.|
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l-~~a~~~~~~~g~~~-v~~~~~D~~~~~~-------~~~~f  188 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-RETRLNLSRLGVLN-VILFHSSSLHIGE-------LNVEF  188 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHTCCS-EEEESSCGGGGGG-------GCCCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHHHhCCCe-EEEEECChhhccc-------ccccC
Confidence            5789999999999999988764  345899999999998 99999999999865 8899999887642       13689


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+|++|||+..
T Consensus       189 D~Il~d~Pcsg  199 (315)
T 1ixk_A          189 DKILLDAPCTG  199 (315)
T ss_dssp             EEEEEECCTTS
T ss_pred             CEEEEeCCCCC
Confidence            99999999753

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.05  E-value=2.5e-10  Score=111.31  Aligned_cols=98  Identities=20%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc--------------CCCEEEEEeCCHHHHHHHH
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------------GCSEVHFVEMDPWVVSNVL  195 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr--------------Ga~~V~~VD~n~~Al~~~a  195 (299)
                      -.|+..+.+.+.+.+..       ..+.+|||+|||||.+.++++.+              ...+++++|+|+.++ +++
T Consensus       153 fyTP~~v~~~mv~~l~~-------~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~-~lA  224 (445)
T 2okc_A          153 YFTPRPLIQAMVDCINP-------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV-TLA  224 (445)
T ss_dssp             GCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH-HHH
T ss_pred             ccCcHHHHHHHHHHhCC-------CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHH-HHH
Confidence            45666677777777653       34679999999999999988753              123599999999998 999


Q ss_pred             HHHHHHhCCCC-cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          196 IPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       196 ~~N~~~~g~~~-~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +.|+...|+.+ ...++++|.....        ...+||+|++||||..
T Consensus       225 ~~nl~l~g~~~~~~~i~~gD~l~~~--------~~~~fD~Iv~NPPf~~  265 (445)
T 2okc_A          225 SMNLYLHGIGTDRSPIVCEDSLEKE--------PSTLVDVILANPPFGT  265 (445)
T ss_dssp             HHHHHHTTCCSSCCSEEECCTTTSC--------CSSCEEEEEECCCSSC
T ss_pred             HHHHHHhCCCcCCCCEeeCCCCCCc--------ccCCcCEEEECCCCCC
Confidence            99999888752 4678999976532        1348999999999985

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.05  E-value=4.9e-10  Score=97.54  Aligned_cols=80  Identities=11%  Similarity=0.052  Sum_probs=66.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++.+. ..+|++||+++.++ +.+++|++.+++. +++++++|+.++....     ..+.||
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l-~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~-----~~~~~D  113 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL-SYALDKVLEVGVP-NIKLLWVDGSDLTDYF-----EDGEID  113 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCCS-SEEEEECCSSCGGGTS-----CTTCCS
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHH-HHHHHHHHHcCCC-CEEEEeCCHHHHHhhc-----CCCCCC
Confidence            46799999999999999988764 35899999999998 9999999999984 5899999988743111     246799


Q ss_pred             EEEEcCCC
Q 022298          234 YMSVTPPY  241 (299)
Q Consensus       234 lI~iDPPY  241 (299)
                      +|++++|-
T Consensus       114 ~i~~~~~~  121 (214)
T 1yzh_A          114 RLYLNFSD  121 (214)
T ss_dssp             EEEEESCC
T ss_pred             EEEEECCC
Confidence            99999884

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.05  E-value=6.7e-10  Score=95.42  Aligned_cols=96  Identities=21%  Similarity=0.171  Sum_probs=74.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      ||.++.+.+.+++.+....    ..++.+|||+|||+|.+++.++.+ +..+|+++|+++.++ +.+++|++.+++.+ +
T Consensus        44 ~~~~~~~~~~~~~~l~~~~----~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-v  117 (207)
T 1jsx_A           44 RDPNEMLVRHILDSIVVAP----YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLEN-I  117 (207)
T ss_dssp             ----CHHHHHHHHHHHHGG----GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCSS-E
T ss_pred             CCHHHHHHHHHHhhhhhhh----hcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-e
Confidence            7888888888888776421    024789999999999999988775 345899999999998 99999999999876 8


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      +++++|+.++.        ..++||+|+++.
T Consensus       118 ~~~~~d~~~~~--------~~~~~D~i~~~~  140 (207)
T 1jsx_A          118 EPVQSRVEEFP--------SEPPFDGVISRA  140 (207)
T ss_dssp             EEEECCTTTSC--------CCSCEEEEECSC
T ss_pred             EEEecchhhCC--------ccCCcCEEEEec
Confidence            99999987653        136899999874

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.04  E-value=1e-09  Score=97.20  Aligned_cols=101  Identities=11%  Similarity=0.043  Sum_probs=79.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      .+|......+.+++.+...      ..+.+|||+|||+|.+++.++.++..+|+++|+++.++ +.+++|+...++.+++
T Consensus        26 ~~~~~~~~~~~~l~~l~~~------~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~   98 (257)
T 3f4k_A           26 QGPGSPEATRKAVSFINEL------TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFI-EIFNENAVKANCADRV   98 (257)
T ss_dssp             SSSCCHHHHHHHHTTSCCC------CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHH-HHHHHHHHHTTCTTTE
T ss_pred             cCCCCHHHHHHHHHHHhcC------CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHH-HHHHHHHHHcCCCCce
Confidence            3566666666665555321      24679999999999999998888655899999999998 9999999999998889


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +++++|+.++.       ...++||+|+++-....
T Consensus        99 ~~~~~d~~~~~-------~~~~~fD~v~~~~~l~~  126 (257)
T 3f4k_A           99 KGITGSMDNLP-------FQNEELDLIWSEGAIYN  126 (257)
T ss_dssp             EEEECCTTSCS-------SCTTCEEEEEEESCSCC
T ss_pred             EEEECChhhCC-------CCCCCEEEEEecChHhh
Confidence            99999986542       12478999999876554

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.04  E-value=2.9e-10  Score=100.18  Aligned_cols=79  Identities=16%  Similarity=0.059  Sum_probs=67.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++++++++ ..+|+++|+++.++ +.+++|.+.+++.++++++.+|+.+..       ...+.||+
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~D~  161 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFY-KTAQKNLKKFNLGKNVKFFNVDFKDAE-------VPEGIFHA  161 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHH-HHHHHHHHHTTCCTTEEEECSCTTTSC-------CCTTCBSE
T ss_pred             CCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHH-HHHHHHHHHcCCCCcEEEEEcChhhcc-------cCCCcccE
Confidence            5789999999999999998888 55899999999998 999999999988667899999987642       01357999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++|||..
T Consensus       162 v~~~~~~~  169 (248)
T 2yvl_A          162 AFVDVREP  169 (248)
T ss_dssp             EEECSSCG
T ss_pred             EEECCcCH
Confidence            99999844

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.04  E-value=1.8e-09  Score=96.34  Aligned_cols=86  Identities=12%  Similarity=0.067  Sum_probs=69.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++.. + ..+|+++|+|+.++ +.+++|++..++.++++++.+|+.+++.....-....++|
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAY-EIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            4679999999999999988764 2 35899999999998 9999999999987789999999998775431000013689


Q ss_pred             eEEEEcCCC
Q 022298          233 DYMSVTPPY  241 (299)
Q Consensus       233 DlI~iDPPY  241 (299)
                      |+||+|.+.
T Consensus       149 D~I~~d~~~  157 (237)
T 3c3y_A          149 DFGFVDADK  157 (237)
T ss_dssp             EEEEECSCG
T ss_pred             CEEEECCch
Confidence            999999764

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.03  E-value=4.6e-10  Score=103.32  Aligned_cols=91  Identities=19%  Similarity=0.171  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D  214 (299)
                      .+.+.+.+.+..       ..+.+|||+|||+|.++..++.+|+ +|++||+|+.++ +.+++|++..+..++++++++|
T Consensus        15 ~i~~~i~~~~~~-------~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~D   85 (285)
T 1zq9_A           15 LIINSIIDKAAL-------RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLV-AELHKRVQGTPVASKLQVLVGD   85 (285)
T ss_dssp             HHHHHHHHHTCC-------CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHH-HHHHHHHTTSTTGGGEEEEESC
T ss_pred             HHHHHHHHhcCC-------CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEcc
Confidence            355555555532       3578999999999999999888876 799999999998 9999999877665568999999


Q ss_pred             hhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          215 VETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       215 ~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +.++.         ...||+|++|+||..
T Consensus        86 ~~~~~---------~~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           86 VLKTD---------LPFFDTCVANLPYQI  105 (285)
T ss_dssp             TTTSC---------CCCCSEEEEECCGGG
T ss_pred             eeccc---------chhhcEEEEecCccc
Confidence            87641         247999999999975

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.03  E-value=3.8e-10  Score=101.31  Aligned_cols=86  Identities=14%  Similarity=0.056  Sum_probs=70.0

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++..  ...+|++||+++.++ +.+++|++.+++.++++++.+|+.+++.....- ...++|
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~-~~~~~f  137 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT-KHAHPYWREAKQEHKIKLRLGPALDTLHSLLNE-GGEHQF  137 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSC-CCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHH-HCSSCE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhc-cCCCCE
Confidence            4679999999999999987763  134799999999998 999999999999878999999998877543100 013689


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+||+|.+..
T Consensus       138 D~V~~d~~~~  147 (242)
T 3r3h_A          138 DFIFIDADKT  147 (242)
T ss_dssp             EEEEEESCGG
T ss_pred             eEEEEcCChH
Confidence            9999999844

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.02  E-value=9.7e-10  Score=110.31  Aligned_cols=107  Identities=17%  Similarity=0.066  Sum_probs=81.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc----CCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----GCSEVHFVEMDPWVVSNVLIPNLEWTGF  204 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr----Ga~~V~~VD~n~~Al~~~a~~N~~~~g~  204 (299)
                      .-.|+..|.+.+..++.....   ...+.+|+|+|||||++.++++.+    +...++++|+|+.++ ++++.|+...|+
T Consensus       198 ~fyTP~~Vv~lmv~ll~~~~~---~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~-~lA~~Nl~l~gi  273 (542)
T 3lkd_A          198 EFYTPQPVAKLMTQIAFLGRE---DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTY-NLARMNMILHGV  273 (542)
T ss_dssp             SCCCCHHHHHHHHHHHHTTCT---TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHH-HHHHHHHHHTTC
T ss_pred             eecccHHHHHHHHHHHhcccC---CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHH-HHHHHHHHHcCC
Confidence            455666777888787763210   025789999999999999998875    356899999999998 999999999888


Q ss_pred             C-CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          205 L-DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       205 ~-~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      . +...+.++|..... ..   .....+||+|++||||..
T Consensus       274 ~~~~~~I~~gDtL~~d-~p---~~~~~~fD~IvaNPPf~~  309 (542)
T 3lkd_A          274 PIENQFLHNADTLDED-WP---TQEPTNFDGVLMNPPYSA  309 (542)
T ss_dssp             CGGGEEEEESCTTTSC-SC---CSSCCCBSEEEECCCTTC
T ss_pred             CcCccceEecceeccc-cc---ccccccccEEEecCCcCC
Confidence            5 35789999976430 00   012468999999999985

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.02  E-value=3e-10  Score=108.37  Aligned_cols=89  Identities=17%  Similarity=0.114  Sum_probs=69.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      .-.|...+.+.+.+.+..       ..+.+|||+|||||.++++++.+  +..+++++|+|+.++ +.+          .
T Consensus        20 ~~~TP~~l~~~~~~~~~~-------~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~-~~a----------~   81 (421)
T 2ih2_A           20 RVETPPEVVDFMVSLAEA-------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-DLP----------P   81 (421)
T ss_dssp             -CCCCHHHHHHHHHHCCC-------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-CCC----------T
T ss_pred             eEeCCHHHHHHHHHhhcc-------CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHH-HhC----------C
Confidence            455667777777777642       24669999999999999998875  446899999999997 665          3


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +++++++|+.++.        ..++||+|++||||..
T Consensus        82 ~~~~~~~D~~~~~--------~~~~fD~Ii~NPPy~~  110 (421)
T 2ih2_A           82 WAEGILADFLLWE--------PGEAFDLILGNPPYGI  110 (421)
T ss_dssp             TEEEEESCGGGCC--------CSSCEEEEEECCCCCC
T ss_pred             CCcEEeCChhhcC--------ccCCCCEEEECcCccC
Confidence            4789999988652        2368999999999975

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.02  E-value=1.5e-09  Score=97.23  Aligned_cols=100  Identities=11%  Similarity=0.071  Sum_probs=78.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~  209 (299)
                      .|......+.++..+..      ...+.+|||+|||+|.+++.++.++..+|+++|+++.++ +.+++|++..++.++++
T Consensus        27 ~~~~~~~~~~~l~~l~~------~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~   99 (267)
T 3kkz_A           27 GPGSPEVTLKALSFIDN------LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFI-DIFNRNARQSGLQNRVT   99 (267)
T ss_dssp             SSCCHHHHHHHHTTCCC------CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHH-HHHHHHHHHTTCTTTEE
T ss_pred             CCCCHHHHHHHHHhccc------CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHHHHHHcCCCcCcE
Confidence            45555444445454431      135789999999999999998888766899999999998 99999999999988899


Q ss_pred             EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++++|+.++.       ...++||+|++...+..
T Consensus       100 ~~~~d~~~~~-------~~~~~fD~i~~~~~~~~  126 (267)
T 3kkz_A          100 GIVGSMDDLP-------FRNEELDLIWSEGAIYN  126 (267)
T ss_dssp             EEECCTTSCC-------CCTTCEEEEEESSCGGG
T ss_pred             EEEcChhhCC-------CCCCCEEEEEEcCCcee
Confidence            9999987642       12468999999887654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.01  E-value=2e-09  Score=94.64  Aligned_cols=83  Identities=13%  Similarity=0.059  Sum_probs=69.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++... ..+|+++|+++.++ +.+++|++.+++.++++++.+|+.+.+...    ...+.||
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~~~fD  128 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRY-EEAHKHVKALGLESRIELLFGDALQLGEKL----ELYPLFD  128 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCGGGSHHHH----TTSCCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECCHHHHHHhc----ccCCCcc
Confidence            46799999999999999887762 45899999999998 999999999998777999999998865432    0136899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|++|+|..
T Consensus       129 ~I~~~~~~~  137 (233)
T 2gpy_A          129 VLFIDAAKG  137 (233)
T ss_dssp             EEEEEGGGS
T ss_pred             EEEECCCHH
Confidence            999999864

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.01  E-value=6.5e-10  Score=101.35  Aligned_cols=93  Identities=15%  Similarity=0.183  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D  214 (299)
                      .+.+.+.+.+..       .++.+|||+|||+|.++.+++.+| .+|++||+|+.++ +.+++|+..   .++++++++|
T Consensus        16 ~i~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~-~~~~~~~~~---~~~v~~i~~D   83 (255)
T 3tqs_A           16 FVLQKIVSAIHP-------QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLV-AFLQKKYNQ---QKNITIYQND   83 (255)
T ss_dssp             HHHHHHHHHHCC-------CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHH-HHHHHHHTT---CTTEEEEESC
T ss_pred             HHHHHHHHhcCC-------CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHH-HHHHHHHhh---CCCcEEEEcc
Confidence            355566666643       357899999999999999988887 4799999999998 999999865   2458999999


Q ss_pred             hhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          215 VETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       215 ~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +.++.-  ..+ ...++|| |+.||||..
T Consensus        84 ~~~~~~--~~~-~~~~~~~-vv~NlPY~i  108 (255)
T 3tqs_A           84 ALQFDF--SSV-KTDKPLR-VVGNLPYNI  108 (255)
T ss_dssp             TTTCCG--GGS-CCSSCEE-EEEECCHHH
T ss_pred             hHhCCH--HHh-ccCCCeE-EEecCCccc
Confidence            987621  000 0135688 899999974

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.00  E-value=2.7e-09  Score=94.39  Aligned_cols=83  Identities=11%  Similarity=0.097  Sum_probs=68.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++.++ ...|++||+++.++ +.+++|++..++.+ ++++++|+.+++...    ...+.||
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l-~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~----~~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGV-GACLASAHEEGLSN-LRVMCHDAVEVLHKM----IPDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHTTCSS-EEEECSCHHHHHHHH----SCTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHH-HHHHHHHHHhCCCc-EEEEECCHHHHHHHH----cCCCChh
Confidence            46799999999999999887764 34799999999998 99999999999876 899999999876532    1257899


Q ss_pred             EEEEc--CCCCC
Q 022298          234 YMSVT--PPYTA  243 (299)
Q Consensus       234 lI~iD--PPY~~  243 (299)
                      .|+++  +||..
T Consensus       108 ~v~~~~~~p~~~  119 (218)
T 3dxy_A          108 MVQLFFPDPWHK  119 (218)
T ss_dssp             EEEEESCCCCCS
T ss_pred             eEEEeCCCCccc
Confidence            99997  66543

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.99  E-value=8.3e-10  Score=110.65  Aligned_cols=102  Identities=13%  Similarity=-0.011  Sum_probs=77.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc----C---------------CCEEEEEeCCHH
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----G---------------CSEVHFVEMDPW  189 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr----G---------------a~~V~~VD~n~~  189 (299)
                      ...|+..+.+.+..++..       ..+.+|||+|||||++.++++.+    +               ...++++|+|+.
T Consensus       150 ~fyTP~~iv~~mv~~l~p-------~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~  222 (541)
T 2ar0_A          150 QYFTPRPLIKTIIHLLKP-------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG  222 (541)
T ss_dssp             CCCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred             eeeCCHHHHHHHHHHhcc-------CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH
Confidence            345666677777777653       35679999999999999988753    1               136999999999


Q ss_pred             HHHHHHHHHHHHhCCCC----cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          190 VVSNVLIPNLEWTGFLD----VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       190 Al~~~a~~N~~~~g~~~----~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      ++ ++++.|+...+..+    ...++++|.......      ...+||+|++||||...
T Consensus       223 ~~-~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~------~~~~fD~Vv~NPPf~~~  274 (541)
T 2ar0_A          223 TR-RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSA  274 (541)
T ss_dssp             HH-HHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTC
T ss_pred             HH-HHHHHHHHHhCCCccccccCCeEeCCCcccccc------cccCCeEEEECCCcccc
Confidence            98 99999999888754    257899997654321      13689999999999863

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.99  E-value=1.6e-09  Score=97.83  Aligned_cols=99  Identities=22%  Similarity=0.128  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 022298          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (299)
Q Consensus       133 td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi  211 (299)
                      .+.+...+++.+......+ ...+.+|||+|||+|.+++.++.. +..+|++||+++.++ +.+++|++.+++.+ ++++
T Consensus        59 ~~~~~~~~~ds~~~l~~~~-~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~l~~-v~~~  135 (249)
T 3g89_A           59 EEVVVKHFLDSLTLLRLPL-WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKV-AFVERAIEVLGLKG-ARAL  135 (249)
T ss_dssp             HHHHHHHHHHHHGGGGSSC-CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCSS-EEEE
T ss_pred             HHHhhceeeechhhhcccc-cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCCc-eEEE
Confidence            3445555655554321000 124789999999999999987764 556899999999998 99999999999976 9999


Q ss_pred             EcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          212 TVRVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       212 ~~D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      ++|+.++....    ...++||+|+++
T Consensus       136 ~~d~~~~~~~~----~~~~~fD~I~s~  158 (249)
T 3g89_A          136 WGRAEVLAREA----GHREAYARAVAR  158 (249)
T ss_dssp             ECCHHHHTTST----TTTTCEEEEEEE
T ss_pred             ECcHHHhhccc----ccCCCceEEEEC
Confidence            99998764210    013689999986

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.99  E-value=3.2e-09  Score=94.21  Aligned_cols=104  Identities=16%  Similarity=0.077  Sum_probs=75.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      .++..+.+.+.+++.+....... ...+.+|||+|||+|.+++.++. ....+|++||+++.++ +.+++|++.+++.+ 
T Consensus        45 ~~~~~~~~~~~~~d~l~~~~~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-  121 (240)
T 1xdz_A           45 ITEKKEVYLKHFYDSITAAFYVD-FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLEN-  121 (240)
T ss_dssp             CCSHHHHHHHTHHHHHGGGGTSC-GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCSS-
T ss_pred             cCCHHHHHHHHHHHHHhHHHhcc-cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-
Confidence            34556667777777664210000 01468999999999999998774 3345799999999998 99999999999865 


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      ++++++|+.++....    ...++||+|+++.
T Consensus       122 v~~~~~d~~~~~~~~----~~~~~fD~V~~~~  149 (240)
T 1xdz_A          122 TTFCHDRAETFGQRK----DVRESYDIVTARA  149 (240)
T ss_dssp             EEEEESCHHHHTTCT----TTTTCEEEEEEEC
T ss_pred             EEEEeccHHHhcccc----cccCCccEEEEec
Confidence            999999998753100    0136899999987

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.99  E-value=2.9e-09  Score=94.23  Aligned_cols=95  Identities=15%  Similarity=0.054  Sum_probs=76.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      ..+|..+...+.+...+..       ..+.+|||+|||+|.+++.++.+...+|+++|+++.++ +.+++|++..++.++
T Consensus        16 ~~~~~~~~~~~~l~~~~~~-------~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~   87 (256)
T 1nkv_A           16 IHNPFTEEKYATLGRVLRM-------KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFT-AQAKRRAEELGVSER   87 (256)
T ss_dssp             SSSSCCHHHHHHHHHHTCC-------CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHH-HHHHHHHHHTTCTTT
T ss_pred             ccCCCCHHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHH-HHHHHHHHhcCCCcc
Confidence            3577777777777766642       35789999999999999988776334799999999998 999999999998777


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      ++++++|+.+..       . .+.||+|++.
T Consensus        88 v~~~~~d~~~~~-------~-~~~fD~V~~~  110 (256)
T 1nkv_A           88 VHFIHNDAAGYV-------A-NEKCDVAACV  110 (256)
T ss_dssp             EEEEESCCTTCC-------C-SSCEEEEEEE
T ss_pred             eEEEECChHhCC-------c-CCCCCEEEEC
Confidence            999999987642       1 4689999974

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.98  E-value=2.6e-09  Score=104.13  Aligned_cols=101  Identities=14%  Similarity=0.029  Sum_probs=75.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHH-------H
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLE-------W  201 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~-------~  201 (299)
                      -++.......+++.+..       .++.+|||||||+|.+.+.++. .|+.+|++||+++.++ +++++|++       .
T Consensus       155 GEt~~~~i~~il~~l~l-------~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~l-elAr~n~e~frkr~~~  226 (438)
T 3uwp_A          155 GETSFDLVAQMIDEIKM-------TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPA-KYAETMDREFRKWMKW  226 (438)
T ss_dssp             GGTHHHHHHHHHHHHCC-------CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCC-------CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHHHHHHHH
Confidence            44555555566666542       3678999999999999998775 5777899999999998 99998764       4


Q ss_pred             hCCC-CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          202 TGFL-DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       202 ~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +|+. ++++++++|+.+..-.. .    -..||+||++++|..
T Consensus       227 ~Gl~~~rVefi~GD~~~lp~~d-~----~~~aDVVf~Nn~~F~  264 (438)
T 3uwp_A          227 YGKKHAEYTLERGDFLSEEWRE-R----IANTSVIFVNNFAFG  264 (438)
T ss_dssp             HTBCCCEEEEEECCTTSHHHHH-H----HHTCSEEEECCTTCC
T ss_pred             hCCCCCCeEEEECcccCCcccc-c----cCCccEEEEcccccC
Confidence            5653 57999999987653211 0    136999999998753

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.98  E-value=1.2e-09  Score=95.65  Aligned_cols=100  Identities=15%  Similarity=0.022  Sum_probs=73.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      +|+..++...+++.+....    ...+.+|||+|||+|.+++.++.+ | ..+|+++|+++.++ +.+++|++.+   .+
T Consensus        52 ~p~~~~~~~~i~~~l~~~~----~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~~~~~~~~~---~~  123 (227)
T 1g8a_A           52 NPNRSKLGAAIMNGLKNFP----IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-RELVPIVEER---RN  123 (227)
T ss_dssp             CTTTCHHHHHHHTTCCCCC----CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHSSC---TT
T ss_pred             CCCchhHHHHHHhhHHhcC----CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHH-HHHHHHHhcc---CC
Confidence            5666666666655554211    125789999999999999998876 4 35899999999998 8999998765   35


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                      ++++++|+.+....    ....+.||+|++|+|.
T Consensus       124 v~~~~~d~~~~~~~----~~~~~~~D~v~~~~~~  153 (227)
T 1g8a_A          124 IVPILGDATKPEEY----RALVPKVDVIFEDVAQ  153 (227)
T ss_dssp             EEEEECCTTCGGGG----TTTCCCEEEEEECCCS
T ss_pred             CEEEEccCCCcchh----hcccCCceEEEECCCC
Confidence            88999998764210    0113579999999983

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.98  E-value=3.1e-09  Score=91.57  Aligned_cols=78  Identities=18%  Similarity=0.003  Sum_probs=66.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||+|.+++.++.++ .+|+++|+++.++ +.+++|++.+++. +++++.+|+.+...       ..+.||+
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~~~~-------~~~~~D~  146 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQ-WQARRRLKNLDLH-NVSTRHGDGWQGWQ-------ARAPFDA  146 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEESCGGGCCG-------GGCCEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHH-HHHHHHHHHcCCC-ceEEEECCcccCCc-------cCCCccE
Confidence            57899999999999999888885 4799999999998 9999999999886 48999999877432       1368999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |+++....
T Consensus       147 i~~~~~~~  154 (210)
T 3lbf_A          147 IIVTAAPP  154 (210)
T ss_dssp             EEESSBCS
T ss_pred             EEEccchh
Confidence            99986543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.97  E-value=1.3e-09  Score=100.33  Aligned_cols=90  Identities=13%  Similarity=0.079  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D  214 (299)
                      .+.+.+.+.+..       .++ +|||+|||+|.++.+++.+|+ +|++||+|++++ +.+++|+..    ++++++++|
T Consensus        34 ~i~~~Iv~~~~~-------~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~-~~l~~~~~~----~~v~vi~~D   99 (271)
T 3fut_A           34 AHLRRIVEAARP-------FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLR-PVLEETLSG----LPVRLVFQD   99 (271)
T ss_dssp             HHHHHHHHHHCC-------CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGH-HHHHHHTTT----SSEEEEESC
T ss_pred             HHHHHHHHhcCC-------CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHhcCC----CCEEEEECC
Confidence            355666666643       246 999999999999999999985 699999999998 999998752    458999999


Q ss_pred             hhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          215 VETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       215 ~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      +.++.-.      ....+|.|+.|+||...
T Consensus       100 ~l~~~~~------~~~~~~~iv~NlPy~is  123 (271)
T 3fut_A          100 ALLYPWE------EVPQGSLLVANLPYHIA  123 (271)
T ss_dssp             GGGSCGG------GSCTTEEEEEEECSSCC
T ss_pred             hhhCChh------hccCccEEEecCccccc
Confidence            9876311      01368999999999863

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.97  E-value=1.3e-09  Score=101.63  Aligned_cols=90  Identities=14%  Similarity=0.069  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D  214 (299)
                      .+.+.+.+.+..       ..+.+|||+|||+|.++..++.++ .+|++||+|+.++ +.+++|++.  . ++++++++|
T Consensus        37 ~i~~~Iv~~l~~-------~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li-~~a~~~~~~--~-~~v~vi~gD  104 (295)
T 3gru_A           37 NFVNKAVESANL-------TKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLE-PYANKLKEL--Y-NNIEIIWGD  104 (295)
T ss_dssp             HHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGH-HHHHHHHHH--C-SSEEEEESC
T ss_pred             HHHHHHHHhcCC-------CCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHH-HHHHHHhcc--C-CCeEEEECc
Confidence            455566565543       357899999999999999988885 4799999999998 999999873  2 358999999


Q ss_pred             hhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          215 VETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       215 ~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +.++.-       ....||.|+.|+||..
T Consensus       105 ~l~~~~-------~~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A          105 ALKVDL-------NKLDFNKVVANLPYQI  126 (295)
T ss_dssp             TTTSCG-------GGSCCSEEEEECCGGG
T ss_pred             hhhCCc-------ccCCccEEEEeCcccc
Confidence            986421       1246999999999974

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.97  E-value=3e-09  Score=91.10  Aligned_cols=98  Identities=13%  Similarity=0.184  Sum_probs=77.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      .+|..+.+.+.+.+.+..        ...+|||+|||+|.++..++.+...+|+++|+++.++ +.+++|++..+..+++
T Consensus        25 ~~~~~~~~~~~~~~~~~~--------~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~   95 (219)
T 3dlc_A           25 FAPIYPIIAENIINRFGI--------TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMN-EIALKNIADANLNDRI   95 (219)
T ss_dssp             TTTHHHHHHHHHHHHHCC--------CEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHH-HHHHHHHHHTTCTTTE
T ss_pred             hccccHHHHHHHHHhcCC--------CCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHhccccCce
Confidence            456666666666665542        3349999999999999998887444799999999998 9999999999987779


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      +++++|+.+..       ...++||+|+++....
T Consensus        96 ~~~~~d~~~~~-------~~~~~~D~v~~~~~l~  122 (219)
T 3dlc_A           96 QIVQGDVHNIP-------IEDNYADLIVSRGSVF  122 (219)
T ss_dssp             EEEECBTTBCS-------SCTTCEEEEEEESCGG
T ss_pred             EEEEcCHHHCC-------CCcccccEEEECchHh
Confidence            99999987632       1246899999987644

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.96  E-value=4.8e-09  Score=94.89  Aligned_cols=76  Identities=17%  Similarity=0.164  Sum_probs=66.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+|+ +|+++|+|+.++ +.+++|+..++.  +++++++|+.+..        ..++||+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~~~fD~  187 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSI-AFLNETKEKENL--NISTALYDINAAN--------IQENYDF  187 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCGGGCC--------CCSCEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEecccccc--------ccCCccE
Confidence            578999999999999999999987 799999999998 999999999887  4899999987642        1478999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |+++.++.
T Consensus       188 i~~~~~~~  195 (286)
T 3m70_A          188 IVSTVVFM  195 (286)
T ss_dssp             EEECSSGG
T ss_pred             EEEccchh
Confidence            99988764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.96  E-value=5.5e-09  Score=92.47  Aligned_cols=79  Identities=15%  Similarity=0.103  Sum_probs=66.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHh-CCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~-g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .+.+|||+|||+|.+++.++.. | ..+|+++|+++.++ +.+++|++.+ + .++++++++|+.+..       ...+.
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~g-~~~v~~~~~d~~~~~-------~~~~~  166 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHL-AQAERNVRAFWQ-VENVRFHLGKLEEAE-------LEEAA  166 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCC-CCCEEEEESCGGGCC-------CCTTC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhcC-CCCEEEEECchhhcC-------CCCCC
Confidence            5789999999999999998876 4 45899999999998 9999999988 7 456899999987651       12367


Q ss_pred             eeEEEEcCCCC
Q 022298          232 FDYMSVTPPYT  242 (299)
Q Consensus       232 fDlI~iDPPY~  242 (299)
                      ||+|++|+|..
T Consensus       167 ~D~v~~~~~~~  177 (258)
T 2pwy_A          167 YDGVALDLMEP  177 (258)
T ss_dssp             EEEEEEESSCG
T ss_pred             cCEEEECCcCH
Confidence            99999999865

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.94  E-value=1.4e-09  Score=97.84  Aligned_cols=91  Identities=15%  Similarity=0.139  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~  213 (299)
                      ..+.+.+.+.+..       ..+.+|||+|||+|.++.+++.+| .+|++||+|+.++ +.+++|++..   ++++++++
T Consensus        16 ~~~~~~i~~~~~~-------~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~-~~a~~~~~~~---~~v~~~~~   83 (244)
T 1qam_A           16 KHNIDKIMTNIRL-------NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLC-KTTENKLVDH---DNFQVLNK   83 (244)
T ss_dssp             HHHHHHHHTTCCC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHH-HHHHHHTTTC---CSEEEECC
T ss_pred             HHHHHHHHHhCCC-------CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHH-HHHHHhhccC---CCeEEEEC
Confidence            3455555554432       257899999999999999999988 5799999999998 9999997642   45899999


Q ss_pred             chhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       214 D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      |+.++.-      .....| .|+.||||..
T Consensus        84 D~~~~~~------~~~~~~-~vv~nlPy~~  106 (244)
T 1qam_A           84 DILQFKF------PKNQSY-KIFGNIPYNI  106 (244)
T ss_dssp             CGGGCCC------CSSCCC-EEEEECCGGG
T ss_pred             hHHhCCc------ccCCCe-EEEEeCCccc
Confidence            9887520      011345 6899999963

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.94  E-value=8.2e-09  Score=97.54  Aligned_cols=80  Identities=23%  Similarity=0.294  Sum_probs=66.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~--g~-~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+|||+|||+|.++++++.+ +..+|++||+|+.++ +.+++|+..+  ++ ..+++++.+|+.+++...     ..+
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l-~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----~~~  193 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVV-DVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----AEG  193 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----CTT
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----cCC
Confidence            4689999999999999998876 456899999999998 9999998764  44 246999999999876431     136


Q ss_pred             CeeEEEEcCC
Q 022298          231 PFDYMSVTPP  240 (299)
Q Consensus       231 ~fDlI~iDPP  240 (299)
                      +||+|++|++
T Consensus       194 ~fDlIi~d~~  203 (334)
T 1xj5_A          194 SYDAVIVDSS  203 (334)
T ss_dssp             CEEEEEECCC
T ss_pred             CccEEEECCC
Confidence            8999999987

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.93  E-value=3.5e-09  Score=91.84  Aligned_cols=96  Identities=10%  Similarity=0.049  Sum_probs=73.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCC---
Q 022298          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLD---  206 (299)
Q Consensus       131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~---  206 (299)
                      |......+.+.+.+..       ..+.+|||+|||+|.++..++.++. .+|+++|+|+.++ +.+++|++..++.+   
T Consensus        12 ~~~~~~~~~l~~~l~~-------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~   83 (217)
T 3jwh_A           12 SLNQQRMNGVVAALKQ-------SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSL-EIAQERLDRLRLPRNQW   83 (217)
T ss_dssp             CHHHHHHHHHHHHHHH-------TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHH-HHHHHHHTTCCCCHHHH
T ss_pred             CHHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHH-HHHHHHHHHhcCCcccC
Confidence            3344455666677764       3578999999999999999888753 5899999999998 99999998877753   


Q ss_pred             -cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          207 -VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       207 -~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                       +++++++|+....       ...++||+|++.-..
T Consensus        84 ~~v~~~~~d~~~~~-------~~~~~fD~v~~~~~l  112 (217)
T 3jwh_A           84 ERLQLIQGALTYQD-------KRFHGYDAATVIEVI  112 (217)
T ss_dssp             TTEEEEECCTTSCC-------GGGCSCSEEEEESCG
T ss_pred             cceEEEeCCccccc-------ccCCCcCEEeeHHHH
Confidence             6899999975321       113689999986543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.92  E-value=3.4e-09  Score=102.73  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=68.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||+|..++.++..+. .+|+++|+++.++ +.+++|++.+|+.  ++++++|+.++....     ..+.||
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l-~~~~~~~~~~g~~--~~~~~~D~~~~~~~~-----~~~~fD  317 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMK--ATVKQGDGRYPSQWC-----GEQQFD  317 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCC--CEEEECCTTCTHHHH-----TTCCEE
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHHcCCC--eEEEeCchhhchhhc-----ccCCCC
Confidence            578999999999999999887643 5899999999998 9999999999873  678999988764322     136899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|++||||..
T Consensus       318 ~Vl~D~Pcsg  327 (429)
T 1sqg_A          318 RILLDAPCSA  327 (429)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEeCCCCc
Confidence            9999999964

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.92  E-value=9.5e-09  Score=91.05  Aligned_cols=82  Identities=12%  Similarity=0.091  Sum_probs=68.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC--C
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD--G  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~--~  230 (299)
                      .+.+|||+|||+|..++.++.. + ..+|+++|+++.++ +.+++|++..++.++++++.+|+.+.+....   ...  +
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~---~~~~~~  147 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNAT-AIAKKYWQKAGVAEKISLRLGPALATLEQLT---QGKPLP  147 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHHH---TSSSCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH---hcCCCC
Confidence            4679999999999999987764 2 34899999999998 9999999999987789999999988765431   112  6


Q ss_pred             CeeEEEEcCC
Q 022298          231 PFDYMSVTPP  240 (299)
Q Consensus       231 ~fDlI~iDPP  240 (299)
                      .||+||+|.+
T Consensus       148 ~fD~V~~d~~  157 (232)
T 3cbg_A          148 EFDLIFIDAD  157 (232)
T ss_dssp             CEEEEEECSC
T ss_pred             CcCEEEECCC
Confidence            8999999987

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.92  E-value=2e-09  Score=97.59  Aligned_cols=91  Identities=15%  Similarity=0.119  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~  213 (299)
                      ..+.+.+.+.+..       .++.+|||+|||+|.++.+++.+|+.+|++||+|+.++ +.+++|    + .++++++++
T Consensus        17 ~~i~~~iv~~~~~-------~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~-~~~~~~----~-~~~v~~i~~   83 (249)
T 3ftd_A           17 EGVLKKIAEELNI-------EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMV-ENLKSI----G-DERLEVINE   83 (249)
T ss_dssp             HHHHHHHHHHTTC-------CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHH-HHHTTS----C-CTTEEEECS
T ss_pred             HHHHHHHHHhcCC-------CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHH-HHHHhc----c-CCCeEEEEc
Confidence            3466666666543       35789999999999999999888877899999999998 899888    2 245899999


Q ss_pred             chhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       214 D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      |+.++.-     ......| .|+.||||..
T Consensus        84 D~~~~~~-----~~~~~~~-~vv~NlPy~i  107 (249)
T 3ftd_A           84 DASKFPF-----CSLGKEL-KVVGNLPYNV  107 (249)
T ss_dssp             CTTTCCG-----GGSCSSE-EEEEECCTTT
T ss_pred             chhhCCh-----hHccCCc-EEEEECchhc
Confidence            9987521     0111234 8999999985

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.91  E-value=1.1e-08  Score=88.56  Aligned_cols=75  Identities=19%  Similarity=0.180  Sum_probs=64.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|. +++++|+|+.++ +.+++|.+.++  .+++++++|+.++.       ...++||+
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~--~~~~~~~~d~~~~~-------~~~~~~D~  106 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMI-RKAREYAKSRE--SNVEFIVGDARKLS-------FEDKTFDY  106 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTT--CCCEEEECCTTSCC-------SCTTCEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcC--CCceEEECchhcCC-------CCCCcEEE
Confidence            378999999999999998888887 899999999998 99999998877  35789999987631       12468999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |+++++
T Consensus       107 v~~~~~  112 (227)
T 1ve3_A          107 VIFIDS  112 (227)
T ss_dssp             EEEESC
T ss_pred             EEEcCc
Confidence            999999

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.91  E-value=5.9e-09  Score=91.34  Aligned_cols=79  Identities=8%  Similarity=0.034  Sum_probs=64.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.++++++.+ ...+|++||+++.++ +.+++|++..++.+ ++++++|+.++....     ..+.||
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l-~~a~~~~~~~~~~n-v~~~~~d~~~l~~~~-----~~~~~d  110 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVI-VTAVQKVKDSEAQN-VKLLNIDADTLTDVF-----EPGEVK  110 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHSCCSS-EEEECCCGGGHHHHC-----CTTSCC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHH-HHHHHHHHHcCCCC-EEEEeCCHHHHHhhc-----CcCCcC
Confidence            4679999999999999998776 245799999999998 99999999998854 899999998753221     246799


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      .|+++.|
T Consensus       111 ~v~~~~~  117 (213)
T 2fca_A          111 RVYLNFS  117 (213)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            9998643

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.90  E-value=4.4e-09  Score=93.79  Aligned_cols=78  Identities=17%  Similarity=0.081  Sum_probs=63.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHHHh--------CCCCcEEEEEcchhhHHHHHhhh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWT--------GFLDVSSIHTVRVETFLERAEQF  225 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~-~V~~VD~n~~Al~~~a~~N~~~~--------g~~~~~~vi~~D~~~~l~~~~~~  225 (299)
                      .+.+|||+|||+|.++++++.++.. .|++||+++.++ +.+++|++.+        ++. +++++++|+.+++...   
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~---  123 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT-NYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNF---  123 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHH-HHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGT---
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHH-HHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHh---
Confidence            4679999999999999999888743 899999999998 9999999887        765 4899999998755321   


Q ss_pred             cCCCCCeeEEEEc
Q 022298          226 VGKDGPFDYMSVT  238 (299)
Q Consensus       226 ~~~~~~fDlI~iD  238 (299)
                       ...+.+|.|+++
T Consensus       124 -~~~~~~d~v~~~  135 (246)
T 2vdv_E          124 -FEKGQLSKMFFC  135 (246)
T ss_dssp             -SCTTCEEEEEEE
T ss_pred             -ccccccCEEEEE
Confidence             124678988765

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.90  E-value=2.5e-09  Score=100.26  Aligned_cols=80  Identities=23%  Similarity=0.272  Sum_probs=66.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~--g~-~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+|||+|||+|.++.+++.+ +..+|++||+|+.++ +.+++|+..+  ++ .++++++.+|+.+++...      .+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~~  180 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI-DVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------KN  180 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH-HHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------TT
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------CC
Confidence            4679999999999999998876 456899999999998 9999998654  33 357999999999887542      46


Q ss_pred             CeeEEEEcCCC
Q 022298          231 PFDYMSVTPPY  241 (299)
Q Consensus       231 ~fDlI~iDPPY  241 (299)
                      +||+|++|++.
T Consensus       181 ~fD~Ii~d~~~  191 (314)
T 2b2c_A          181 EFDVIITDSSD  191 (314)
T ss_dssp             CEEEEEECCC-
T ss_pred             CceEEEEcCCC
Confidence            89999999963

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.90  E-value=6e-09  Score=96.76  Aligned_cols=94  Identities=16%  Similarity=0.032  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi  211 (299)
                      ..+...+...+..       .++.+|||+|||+|.+++.++.++.  .+|+++|+++.++ +.+++|++.+++.+ ++++
T Consensus        61 ~~~~~~l~~~l~~-------~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~g~~~-v~~~  131 (317)
T 1dl5_A           61 PSLMALFMEWVGL-------DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVERLGIEN-VIFV  131 (317)
T ss_dssp             HHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHTTCCS-EEEE
T ss_pred             HHHHHHHHHhcCC-------CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCCC-eEEE
Confidence            3444555555542       3578999999999999999887653  4699999999998 99999999999876 8999


Q ss_pred             EcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          212 TVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       212 ~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .+|+.+...       ..++||+|+++++...
T Consensus       132 ~~d~~~~~~-------~~~~fD~Iv~~~~~~~  156 (317)
T 1dl5_A          132 CGDGYYGVP-------EFSPYDVIFVTVGVDE  156 (317)
T ss_dssp             ESCGGGCCG-------GGCCEEEEEECSBBSC
T ss_pred             ECChhhccc-------cCCCeEEEEEcCCHHH
Confidence            999877432       1368999999999865

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.90  E-value=5.7e-09  Score=92.05  Aligned_cols=71  Identities=13%  Similarity=0.082  Sum_probs=57.7

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ...+|||+|||+|.+++..+..  ++ +++++|+|+.++ +++++|+..+|..+++++  .|.....        ..++|
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~l-eiar~~~~~~g~~~~v~~--~d~~~~~--------~~~~~  116 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEI-AFLSSIIGKLKTTIKYRF--LNKESDV--------YKGTY  116 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHH-HHHHHHHHHSCCSSEEEE--ECCHHHH--------TTSEE
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHH-HHHHHHHHhcCCCccEEE--ecccccC--------CCCCc
Confidence            4679999999999999987665  56 899999999998 999999999998765655  5554322        24679


Q ss_pred             eEEEE
Q 022298          233 DYMSV  237 (299)
Q Consensus       233 DlI~i  237 (299)
                      |+|++
T Consensus       117 DvVLa  121 (200)
T 3fzg_A          117 DVVFL  121 (200)
T ss_dssp             EEEEE
T ss_pred             ChhhH
Confidence            99885

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.90  E-value=1.3e-08  Score=92.69  Aligned_cols=74  Identities=5%  Similarity=-0.014  Sum_probs=62.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG---a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      ++.+|||+|||+|.+++.++.+.   ..+|++||+++.++ +.++++++..+...+++++++|+.++-         .+.
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml-~~A~~~~~~~~~~~~v~~~~~D~~~~~---------~~~  139 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN  139 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCTTTCC---------CCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHHHHHHhhccCceEEEeeccccccc---------ccc
Confidence            58899999999999999887752   12799999999998 999999999888778999999987641         367


Q ss_pred             eeEEEEc
Q 022298          232 FDYMSVT  238 (299)
Q Consensus       232 fDlI~iD  238 (299)
                      ||+|++.
T Consensus       140 ~d~v~~~  146 (261)
T 4gek_A          140 ASMVVLN  146 (261)
T ss_dssp             EEEEEEE
T ss_pred             cccceee
Confidence            9999875

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.89  E-value=4.5e-09  Score=98.07  Aligned_cols=82  Identities=20%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh--C-C-CCcEEEEEcchhhHHHHHhhhcCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--G-F-LDVSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~--g-~-~~~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      .+.+|||+|||+|.++.+++.+ +..+|++||+|+.++ +.+++|+...  + + ..+++++.+|+.+++...      .
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~  149 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELV-EVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------E  149 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------C
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHhHhhccccccCCceEEEEchHHHHHHhc------C
Confidence            4689999999999999998876 466899999999998 9999998752  2 2 356999999999886542      4


Q ss_pred             CCeeEEEEcCCCCC
Q 022298          230 GPFDYMSVTPPYTA  243 (299)
Q Consensus       230 ~~fDlI~iDPPY~~  243 (299)
                      ++||+|++|++...
T Consensus       150 ~~fD~Ii~d~~~~~  163 (314)
T 1uir_A          150 ERYDVVIIDLTDPV  163 (314)
T ss_dssp             CCEEEEEEECCCCB
T ss_pred             CCccEEEECCCCcc
Confidence            68999999998643

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.89  E-value=1.5e-08  Score=89.74  Aligned_cols=85  Identities=11%  Similarity=-0.043  Sum_probs=67.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhh-------
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF-------  225 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~-------  225 (299)
                      .+.+|||+|||+|..++.++.+.  ..+|+++|+++.++ +.+++|++..++.++++++.+|+.+.+.....-       
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT-NVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence            46799999999999999888762  45899999999998 999999999998777999999998865432100       


Q ss_pred             -cCC-C-CCeeEEEEcCC
Q 022298          226 -VGK-D-GPFDYMSVTPP  240 (299)
Q Consensus       226 -~~~-~-~~fDlI~iDPP  240 (299)
                       ... . +.||+||+|..
T Consensus       139 ~~f~~~~~~fD~I~~~~~  156 (239)
T 2hnk_A          139 SDFAFGPSSIDLFFLDAD  156 (239)
T ss_dssp             TTTCCSTTCEEEEEECSC
T ss_pred             ccccCCCCCcCEEEEeCC
Confidence             000 1 67999999964

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.89  E-value=8.7e-09  Score=96.06  Aligned_cols=84  Identities=15%  Similarity=0.067  Sum_probs=64.6

Q ss_pred             CCCCEEEEECCccchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhC----------CCCcEEEEEcchhhHHHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTG----------FLDVSSIHTVRVETFLER  221 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr-Ga-~~V~~VD~n~~Al~~~a~~N~~~~g----------~~~~~~vi~~D~~~~l~~  221 (299)
                      .++.+|||+|||+|.+++.++.. |. .+|+++|+++.++ +.+++|++.++          ..++++++.+|+.+....
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHH-DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            35789999999999999998876 65 6899999999998 99999998643          234689999998875321


Q ss_pred             HhhhcCCCCCeeEEEEcCCCCC
Q 022298          222 AEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       222 ~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .     ..+.||+|++|+|-..
T Consensus       183 ~-----~~~~fD~V~~~~~~~~  199 (336)
T 2b25_A          183 I-----KSLTFDAVALDMLNPH  199 (336)
T ss_dssp             ----------EEEEEECSSSTT
T ss_pred             c-----CCCCeeEEEECCCCHH
Confidence            1     1357999999987543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.89  E-value=4.9e-09  Score=90.90  Aligned_cols=96  Identities=14%  Similarity=0.105  Sum_probs=73.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCC--
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLD--  206 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~--  206 (299)
                      .|......+.+...+..       ..+.+|||+|||+|.++..++.++. .+|+++|+|+.++ +.+++|+...++.+  
T Consensus        11 ~~~~~~~~~~l~~~l~~-------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~   82 (219)
T 3jwg_A           11 LNLNQQRLGTVVAVLKS-------VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVL-ERAKDRLKIDRLPEMQ   82 (219)
T ss_dssp             -CHHHHHHHHHHHHHHH-------TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHH-HHHHHHHTGGGSCHHH
T ss_pred             CcchHHHHHHHHHHHhh-------cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHhhcccccc
Confidence            45555556666677664       3578999999999999998888763 5899999999998 99999998877653  


Q ss_pred             --cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          207 --VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       207 --~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                        +++++++|+....       ...++||+|++.-.
T Consensus        83 ~~~v~~~~~d~~~~~-------~~~~~fD~V~~~~~  111 (219)
T 3jwg_A           83 RKRISLFQSSLVYRD-------KRFSGYDAATVIEV  111 (219)
T ss_dssp             HTTEEEEECCSSSCC-------GGGTTCSEEEEESC
T ss_pred             CcceEEEeCcccccc-------cccCCCCEEEEHHH
Confidence              6899999975321       11368999997543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.88  E-value=2.8e-09  Score=94.12  Aligned_cols=76  Identities=17%  Similarity=0.044  Sum_probs=63.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|.+..+  .+++++++|+.+.+..     ...+.||+
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~--~~v~~~~~d~~~~~~~-----~~~~~fD~  131 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQT--HKVIPLKGLWEDVAPT-----LPDGHFDG  131 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHH-HHHHHHGGGCS--SEEEEEESCHHHHGGG-----SCTTCEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHH-HHHHHHHHhcC--CCeEEEecCHHHhhcc-----cCCCceEE
Confidence            4789999999999999988776766899999999998 99999988766  3588999999876421     12468999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++|
T Consensus       132 V~~d  135 (236)
T 1zx0_A          132 ILYD  135 (236)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9996

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.88  E-value=4.3e-09  Score=93.73  Aligned_cols=80  Identities=16%  Similarity=0.022  Sum_probs=65.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|..+..+++++..++++||+|+.++ +.++++.+..+.  +++++.+|+...+...     ..+.||.
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~-~~a~~~~~~~~~--~~~~~~~~a~~~~~~~-----~~~~FD~  131 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQTH--KVIPLKGLWEDVAPTL-----PDGHFDG  131 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHH-HHHHHHGGGCSS--EEEEEESCHHHHGGGS-----CTTCEEE
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHH-HHHHHHHhhCCC--ceEEEeehHHhhcccc-----cccCCce
Confidence            5889999999999999887777656899999999998 999999887664  4788999988765322     3578999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |+.|+...
T Consensus       132 i~~D~~~~  139 (236)
T 3orh_A          132 ILYDTYPL  139 (236)
T ss_dssp             EEECCCCC
T ss_pred             EEEeeeec
Confidence            99998654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.88  E-value=5.1e-09  Score=94.98  Aligned_cols=78  Identities=17%  Similarity=0.166  Sum_probs=65.7

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHh-CCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~-g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .+.+|||+|||+|.+++.++..  +..+|+++|+++.++ +.+++|++.+ |. ++++++++|+.+.+        ..+.
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~g~-~~v~~~~~d~~~~~--------~~~~  179 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNL-KKAMDNLSEFYDI-GNVRTSRSDIADFI--------SDQM  179 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHH-HHHHHHHHTTSCC-TTEEEECSCTTTCC--------CSCC
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHhcCCC-CcEEEEECchhccC--------cCCC
Confidence            5789999999999999988876  245899999999998 9999999988 75 45899999987642        2367


Q ss_pred             eeEEEEcCCCC
Q 022298          232 FDYMSVTPPYT  242 (299)
Q Consensus       232 fDlI~iDPPY~  242 (299)
                      ||+|++|+|..
T Consensus       180 fD~Vi~~~~~~  190 (275)
T 1yb2_A          180 YDAVIADIPDP  190 (275)
T ss_dssp             EEEEEECCSCG
T ss_pred             ccEEEEcCcCH
Confidence            99999999854

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.87  E-value=2.3e-08  Score=87.18  Aligned_cols=85  Identities=21%  Similarity=0.140  Sum_probs=66.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC------CEEEEEeCCHHHHHHHHHHHHHHhCC----CCcEEEEEcchhhHHHHHhh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC------SEVHFVEMDPWVVSNVLIPNLEWTGF----LDVSSIHTVRVETFLERAEQ  224 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa------~~V~~VD~n~~Al~~~a~~N~~~~g~----~~~~~vi~~D~~~~l~~~~~  224 (299)
                      ++.+|||+|||+|.+++.++..+.      .+|+++|+++.++ +.+++|++.+++    .++++++.+|+.+...... 
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  157 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLV-NFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK-  157 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHH-HHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH-
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHH-HHHHHHHHHcCccccccCCEEEEECChHhcccccC-
Confidence            578999999999999998877643      4899999999998 999999999873    3458999999887431000 


Q ss_pred             hcCCCCCeeEEEEcCCCCC
Q 022298          225 FVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       225 ~~~~~~~fDlI~iDPPY~~  243 (299)
                        ...++||+|+++.+...
T Consensus       158 --~~~~~fD~I~~~~~~~~  174 (227)
T 2pbf_A          158 --KELGLFDAIHVGASASE  174 (227)
T ss_dssp             --HHHCCEEEEEECSBBSS
T ss_pred             --ccCCCcCEEEECCchHH
Confidence              00267999999998764

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.87  E-value=2.9e-09  Score=104.00  Aligned_cols=82  Identities=12%  Similarity=0.023  Sum_probs=67.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|..++.++.+  +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.++...     ...+.|
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l-~~~~~~~~~~g~~~-v~~~~~D~~~~~~~-----~~~~~f  331 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRM-KRLKDFVKRMGIKI-VKPLVKDARKAPEI-----IGEEVA  331 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHTTCCS-EEEECSCTTCCSSS-----SCSSCE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCCc-EEEEEcChhhcchh-----hccCCC
Confidence            5789999999999999988764  335899999999998 99999999999864 88999998764211     012579


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+|++|||+..
T Consensus       332 D~Vl~D~Pcsg  342 (450)
T 2yxl_A          332 DKVLLDAPCTS  342 (450)
T ss_dssp             EEEEEECCCCC
T ss_pred             CEEEEcCCCCC
Confidence            99999999954

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.86  E-value=2e-09  Score=108.03  Aligned_cols=101  Identities=15%  Similarity=0.042  Sum_probs=76.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc--------C--------CCEEEEEeCCHHHH
Q 022298          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------G--------CSEVHFVEMDPWVV  191 (299)
Q Consensus       128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr--------G--------a~~V~~VD~n~~Al  191 (299)
                      +.-.|+..|.+.+.+++..        ...+|||+|||||++.++++.+        +        ...++++|+|+.++
T Consensus       225 G~fyTP~~Vv~lmv~ll~p--------~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~  296 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEMLEP--------YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTW  296 (544)
T ss_dssp             TTTCCCHHHHHHHHHHHCC--------CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHH
T ss_pred             CeEeCCHHHHHHHHHHHhc--------CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHH
Confidence            3456777777787777753        2349999999999999987532        0        24799999999998


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          192 SNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       192 ~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                       ++++.|+...|+...+.+.++|.....      .....+||+|++||||..
T Consensus       297 -~lA~~Nl~l~gi~~~i~i~~gDtL~~~------~~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          297 -KLAAMNMVIRGIDFNFGKKNADSFLDD------QHPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             -HHHHHHHHHTTCCCBCCSSSCCTTTSC------SCTTCCEEEEEECCCSSC
T ss_pred             -HHHHHHHHHhCCCcccceeccchhcCc------ccccccccEEEECCCcCC
Confidence             999999999988655444778865421      012468999999999986

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.86  E-value=2e-08  Score=84.90  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=66.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.+++|++..+..+ ++++++|+.+..       . .+.||+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~~~-~~~~~~d~~~~~-------~-~~~~D~  100 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSI-ANVERIKSIENLDN-LHTRVVDLNNLT-------F-DRQYDF  100 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHTCTT-EEEEECCGGGCC-------C-CCCEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHhCCCCC-cEEEEcchhhCC-------C-CCCceE
Confidence            577999999999999999888876 799999999998 99999999888754 889999987642       1 468999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++...+.
T Consensus       101 v~~~~~l~  108 (199)
T 2xvm_A          101 ILSTVVLM  108 (199)
T ss_dssp             EEEESCGG
T ss_pred             EEEcchhh
Confidence            99987654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.85  E-value=1.4e-08  Score=87.75  Aligned_cols=80  Identities=15%  Similarity=0.028  Sum_probs=66.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|.+++.++..+.  .+|+++|+++.++ +.+++|+..+++.+ ++++.+|+...+.       ..+.|
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~-v~~~~~d~~~~~~-------~~~~f  147 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELA-EKAERTLRKLGYDN-VIVIVGDGTLGYE-------PLAPY  147 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHTCTT-EEEEESCGGGCCG-------GGCCE
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-eEEEECCcccCCC-------CCCCe
Confidence            578999999999999998887652  5899999999998 99999999988765 8899999854321       13679


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+|+++.++..
T Consensus       148 D~v~~~~~~~~  158 (215)
T 2yxe_A          148 DRIYTTAAGPK  158 (215)
T ss_dssp             EEEEESSBBSS
T ss_pred             eEEEECCchHH
Confidence            99999988764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.85  E-value=2.3e-08  Score=92.67  Aligned_cols=83  Identities=17%  Similarity=0.195  Sum_probs=65.1

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh---CCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT---GFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~---g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+|||+|||+|.++.+++.. +..+|++||+|+.++ +.+++|+..+   ....+++++.+|+.+++...     ..+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----~~~  168 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVM-EQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----PDN  168 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----CTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----cCC
Confidence            4689999999999999998876 456899999999998 9999987432   12356899999998876421     246


Q ss_pred             CeeEEEEcCCCCC
Q 022298          231 PFDYMSVTPPYTA  243 (299)
Q Consensus       231 ~fDlI~iDPPY~~  243 (299)
                      +||+|++|+|...
T Consensus       169 ~fDvIi~d~~~~~  181 (304)
T 3bwc_A          169 TYDVVIIDTTDPA  181 (304)
T ss_dssp             CEEEEEEECC---
T ss_pred             ceeEEEECCCCcc
Confidence            8999999997643

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.85  E-value=2.2e-08  Score=92.02  Aligned_cols=81  Identities=17%  Similarity=0.227  Sum_probs=66.8

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g--~-~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+|||+|||+|.++.+++.. +..+|++||+|+.++ +.+++|+..++  + ..+++++.+|+.+++...      .+
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~  150 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVI-EVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TN  150 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CS
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHhHHhccccCCCcEEEEECChHHHHHhC------CC
Confidence            4689999999999999998876 356899999999998 99999986542  2 356899999999887542      46


Q ss_pred             CeeEEEEcCCCC
Q 022298          231 PFDYMSVTPPYT  242 (299)
Q Consensus       231 ~fDlI~iDPPY~  242 (299)
                      +||+|++|++..
T Consensus       151 ~fD~Ii~d~~~~  162 (283)
T 2i7c_A          151 TYDVIIVDSSDP  162 (283)
T ss_dssp             CEEEEEEECCCT
T ss_pred             CceEEEEcCCCC
Confidence            899999998643

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.85  E-value=3e-08  Score=90.53  Aligned_cols=75  Identities=16%  Similarity=0.080  Sum_probs=66.2

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||+|.+++.++.+ | .+|+++|+++.++ +.+++|+...++.++++++.+|+.++          .+.||
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~fD  139 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQY-AHDKAMFDEVDSPRRKEVRIQGWEEF----------DEPVD  139 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHH-HHHHHHHHHSCCSSCEEEEECCGGGC----------CCCCS
T ss_pred             CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECCHHHc----------CCCcc
Confidence            5779999999999999998887 7 4799999999998 99999999999887899999998764          37899


Q ss_pred             EEEEcCCC
Q 022298          234 YMSVTPPY  241 (299)
Q Consensus       234 lI~iDPPY  241 (299)
                      +|++.-.+
T Consensus       140 ~v~~~~~~  147 (302)
T 3hem_A          140 RIVSLGAF  147 (302)
T ss_dssp             EEEEESCG
T ss_pred             EEEEcchH
Confidence            99987543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.85  E-value=1.9e-08  Score=90.56  Aligned_cols=80  Identities=16%  Similarity=0.081  Sum_probs=65.9

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHh-C-CCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWT-G-FLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~-g-~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+|||+|||+|.++++++.+ | ..+|+++|+++.++ +.+++|++.+ + +.++++++.+|+.+..       ...+
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~g~~~~~v~~~~~d~~~~~-------~~~~  170 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA-EHARRNVSGCYGQPPDNWRLVVSDLADSE-------LPDG  170 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHHTSCCTTEEEECSCGGGCC-------CCTT
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhcCCCCCcEEEEECchHhcC-------CCCC
Confidence            5789999999999999988874 3 45899999999998 9999999988 5 4456899999987642       1246


Q ss_pred             CeeEEEEcCCCC
Q 022298          231 PFDYMSVTPPYT  242 (299)
Q Consensus       231 ~fDlI~iDPPY~  242 (299)
                      .||+|++|+|..
T Consensus       171 ~~D~v~~~~~~~  182 (280)
T 1i9g_A          171 SVDRAVLDMLAP  182 (280)
T ss_dssp             CEEEEEEESSCG
T ss_pred             ceeEEEECCcCH
Confidence            799999999844

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.85  E-value=1.1e-08  Score=89.29  Aligned_cols=90  Identities=16%  Similarity=0.060  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D  214 (299)
                      .+.+.+.+.+..       ..+.+|||+|||+|.++..++..+ .+|+++|+++.++ +.+++|+..++   +++++++|
T Consensus        57 ~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~-~~a~~~~~~~~---~v~~~~~d  124 (231)
T 1vbf_A           57 NLGIFMLDELDL-------HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMY-NYASKLLSYYN---NIKLILGD  124 (231)
T ss_dssp             HHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHH-HHHHHHHTTCS---SEEEEESC
T ss_pred             HHHHHHHHhcCC-------CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHH-HHHHHHHhhcC---CeEEEECC
Confidence            344455555532       357899999999999999988887 5899999999998 99999987766   48899999


Q ss_pred             hhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          215 VETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       215 ~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +.+.+.       ..+.||+|+++.++..
T Consensus       125 ~~~~~~-------~~~~fD~v~~~~~~~~  146 (231)
T 1vbf_A          125 GTLGYE-------EEKPYDRVVVWATAPT  146 (231)
T ss_dssp             GGGCCG-------GGCCEEEEEESSBBSS
T ss_pred             cccccc-------cCCCccEEEECCcHHH
Confidence            876321       1368999999988754

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.84  E-value=1.7e-08  Score=91.13  Aligned_cols=80  Identities=18%  Similarity=0.229  Sum_probs=67.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|+ +|+++|+++.++ +.++++++..++.++++++++|+.+....      ..++||+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~fD~  139 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMI-DRAKQAAEAKGVSDNMQFIHCAAQDVASH------LETPVDL  139 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHC-CCGGGEEEEESCGGGTGGG------CSSCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCcceEEEEcCHHHhhhh------cCCCceE
Confidence            467999999999999999888876 799999999998 99999999988866799999999876421      2478999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++.-...
T Consensus       140 v~~~~~l~  147 (285)
T 4htf_A          140 ILFHAVLE  147 (285)
T ss_dssp             EEEESCGG
T ss_pred             EEECchhh
Confidence            99876543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.83  E-value=1e-08  Score=90.25  Aligned_cols=79  Identities=13%  Similarity=-0.125  Sum_probs=62.5

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|.+++.++.+ | ..+|++||+++.++ +.+.+|++.+   .+++++++|+.+....    ....+.|
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i-~~~~~~a~~~---~~v~~~~~d~~~~~~~----~~~~~~~  148 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSG-RDLINLAKKR---TNIIPVIEDARHPHKY----RMLIAMV  148 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHC---TTEEEECSCTTCGGGG----GGGCCCE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHhhcc---CCeEEEEcccCChhhh----cccCCcE
Confidence            4789999999999999988876 3 45899999999987 7888888775   3488999998764211    1124689


Q ss_pred             eEEEEcCCC
Q 022298          233 DYMSVTPPY  241 (299)
Q Consensus       233 DlI~iDPPY  241 (299)
                      |+|++|+|.
T Consensus       149 D~V~~~~~~  157 (233)
T 2ipx_A          149 DVIFADVAQ  157 (233)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEcCCC
Confidence            999999993

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.83  E-value=1.4e-08  Score=89.66  Aligned_cols=95  Identities=17%  Similarity=0.100  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (299)
Q Consensus       133 td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~  212 (299)
                      ...+...+.+.+..       ..+.+|||+|||+|.+++.++.++..+|+++|+++.++ +.+++|++.+++.+ ++++.
T Consensus        76 ~~~~~~~~~~~l~~-------~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~-v~~~~  146 (235)
T 1jg1_A           76 APHMVAIMLEIANL-------KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELV-EFAKRNLERAGVKN-VHVIL  146 (235)
T ss_dssp             CHHHHHHHHHHHTC-------CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEE
T ss_pred             cHHHHHHHHHhcCC-------CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-cEEEE
Confidence            33455555566542       35779999999999999988876525799999999998 99999999998866 88999


Q ss_pred             cchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       213 ~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +|+...+.       ....||+|+++.+...
T Consensus       147 ~d~~~~~~-------~~~~fD~Ii~~~~~~~  170 (235)
T 1jg1_A          147 GDGSKGFP-------PKAPYDVIIVTAGAPK  170 (235)
T ss_dssp             SCGGGCCG-------GGCCEEEEEECSBBSS
T ss_pred             CCcccCCC-------CCCCccEEEECCcHHH
Confidence            99733221       1246999999987654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.83  E-value=9.7e-09  Score=90.50  Aligned_cols=80  Identities=14%  Similarity=-0.006  Sum_probs=63.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++.+ |..+|++||+++.++ +.+++|++.+   +++.++.+|+.......   . ..+.||
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~-~~a~~~~~~~---~~v~~~~~d~~~~~~~~---~-~~~~~D  145 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM-RELLDACAER---ENIIPILGDANKPQEYA---N-IVEKVD  145 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHH-HHHHHHTTTC---TTEEEEECCTTCGGGGT---T-TSCCEE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHH-HHHHHHhhcC---CCeEEEECCCCCccccc---c-cCccEE
Confidence            5789999999999999988876 656899999999998 9999997655   45889999987632100   0 126799


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|+.|+|..
T Consensus       146 ~v~~~~~~~  154 (230)
T 1fbn_A          146 VIYEDVAQP  154 (230)
T ss_dssp             EEEECCCST
T ss_pred             EEEEecCCh
Confidence            999998755

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.81  E-value=3.1e-08  Score=88.45  Aligned_cols=81  Identities=15%  Similarity=0.094  Sum_probs=67.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+...+|+++|+++.++ +.++++++..++.++++++.+|+.+..       ...++||+
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~  132 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQV-NQANARATAAGLANRVTFSYADAMDLP-------FEDASFDA  132 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTTSCC-------SCTTCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEECccccCC-------CCCCCccE
Confidence            5789999999999999988875345799999999998 999999999998778999999987631       12468999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++.-....
T Consensus       133 v~~~~~l~~  141 (273)
T 3bus_A          133 VWALESLHH  141 (273)
T ss_dssp             EEEESCTTT
T ss_pred             EEEechhhh
Confidence            998765543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.79  E-value=2.4e-08  Score=87.02  Aligned_cols=81  Identities=16%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCC----CCcEEEEEcchhhHHHHHhhhcCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGF----LDVSSIHTVRVETFLERAEQFVGK  228 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga-~~V~~VD~n~~Al~~~a~~N~~~~g~----~~~~~vi~~D~~~~l~~~~~~~~~  228 (299)
                      .+.+|||+|||+|.++..++.+ |. .+|+++|+++.++ +.+++|++.++.    .++++++.+|+.....       .
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------~  148 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-------E  148 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-------G
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHhhcccccCCCcEEEEECCcccCcc-------c
Confidence            5789999999999999988765 43 4899999999998 999999998764    3458899999875321       1


Q ss_pred             CCCeeEEEEcCCCCC
Q 022298          229 DGPFDYMSVTPPYTA  243 (299)
Q Consensus       229 ~~~fDlI~iDPPY~~  243 (299)
                      .+.||+|+++.|+..
T Consensus       149 ~~~fD~i~~~~~~~~  163 (226)
T 1i1n_A          149 EAPYDAIHVGAAAPV  163 (226)
T ss_dssp             GCCEEEEEECSBBSS
T ss_pred             CCCcCEEEECCchHH
Confidence            357999999998764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.78  E-value=5.5e-08  Score=87.91  Aligned_cols=96  Identities=19%  Similarity=0.102  Sum_probs=73.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC---C
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL---D  206 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~---~  206 (299)
                      +...+..++.+.+.+..       ..+.+|||+|||+|.+++.++.+|+ +|+++|+|+.++ +.+++|+...+..   .
T Consensus        39 ~~~~~~~~~~l~~~l~~-------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~  109 (293)
T 3thr_A           39 RSRTAEYKAWLLGLLRQ-------HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKML-KYALKERWNRRKEPAFD  109 (293)
T ss_dssp             SCBCHHHHHHHHHHHHH-------TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTTSHHHH
T ss_pred             cchHHHHHHHHHHHhcc-------cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHhhhhcccccccc
Confidence            45556677777777765       2578999999999999999999987 799999999998 9999987554332   2


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      ++.+..+|+..+....    ...++||+|++.
T Consensus       110 ~~~~~~~d~~~~~~~~----~~~~~fD~V~~~  137 (293)
T 3thr_A          110 KWVIEEANWLTLDKDV----PAGDGFDAVICL  137 (293)
T ss_dssp             TCEEEECCGGGHHHHS----CCTTCEEEEEEC
T ss_pred             eeeEeecChhhCcccc----ccCCCeEEEEEc
Confidence            4678889987754221    124789999996

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.77  E-value=2.5e-08  Score=93.12  Aligned_cols=73  Identities=21%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             CCCCEEEEECCccchHHHHHH-H-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAI-S-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAl-S-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      ..+.+|||+|||+|.++...+ . .|+ +|++||+|+.++ +.+++|++..|+ ++++++++|+.++.         .+.
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l-~~Ar~~~~~~gl-~~v~~v~gDa~~l~---------d~~  188 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIA-ELSRKVIEGLGV-DGVNVITGDETVID---------GLE  188 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHH-HHHHHHHHHHTC-CSEEEEESCGGGGG---------GCC
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHH-HHHHHHHHhcCC-CCeEEEECchhhCC---------CCC
Confidence            368999999999997764433 3 365 799999999998 999999999998 77999999998752         368


Q ss_pred             eeEEEEc
Q 022298          232 FDYMSVT  238 (299)
Q Consensus       232 fDlI~iD  238 (299)
                      ||+||++
T Consensus       189 FDvV~~~  195 (298)
T 3fpf_A          189 FDVLMVA  195 (298)
T ss_dssp             CSEEEEC
T ss_pred             cCEEEEC
Confidence            9999986

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.77  E-value=2.2e-08  Score=92.10  Aligned_cols=77  Identities=13%  Similarity=-0.022  Sum_probs=65.9

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++.+ |+ +|+++|+++.++ +.+++|++.+++.++++++.+|+.+..       ...+.||
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD  187 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQA-DFGNRRARELRIDDHVRSRVCNMLDTP-------FDKGAVT  187 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTTSCC-------CCTTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHHcCCCCceEEEECChhcCC-------CCCCCEe
Confidence            5789999999999999998887 65 699999999998 999999999998878999999987641       1247899


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|++.--
T Consensus       188 ~V~~~~~  194 (312)
T 3vc1_A          188 ASWNNES  194 (312)
T ss_dssp             EEEEESC
T ss_pred             EEEECCc
Confidence            9998644

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.77  E-value=2.6e-08  Score=86.01  Aligned_cols=79  Identities=13%  Similarity=0.053  Sum_probs=66.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|.++..++.++  ..+|+++|+++.++ +.+++|+...++. +++++.+|+.++.       ...++|
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~-------~~~~~f  107 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMV-NYAWEKVNKLGLK-NVEVLKSEENKIP-------LPDNTV  107 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHH-HHHHHHHHHHTCT-TEEEEECBTTBCS-------SCSSCE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEecccccCC-------CCCCCe
Confidence            57899999999999999988875  34899999999998 9999999999876 4899999987642       124689


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+|+++-...
T Consensus       108 D~v~~~~~l~  117 (219)
T 3dh0_A          108 DFIFMAFTFH  117 (219)
T ss_dssp             EEEEEESCGG
T ss_pred             eEEEeehhhh
Confidence            9999976644

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.76  E-value=4.1e-08  Score=87.39  Aligned_cols=76  Identities=16%  Similarity=0.073  Sum_probs=63.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.++. +|+++|+++.++ +.++++++..+.. +++++.+|+.++.       ...+.||+
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~~~~~~-~v~~~~~d~~~l~-------~~~~~fD~  106 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDIL-KVARAFIEGNGHQ-QVEYVQGDAEQMP-------FTDERFHI  106 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCC-CCC-------SCTTCEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHH-HHHHHHHHhcCCC-ceEEEEecHHhCC-------CCCCCEEE
Confidence            578999999999999998888876 899999999998 9999999988875 4889999987631       12468999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |++.--
T Consensus       107 V~~~~~  112 (260)
T 1vl5_A          107 VTCRIA  112 (260)
T ss_dssp             EEEESC
T ss_pred             EEEhhh
Confidence            998743

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.76  E-value=5e-08  Score=95.40  Aligned_cols=95  Identities=14%  Similarity=0.112  Sum_probs=69.7

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHH-------HHHHHHhC
Q 022298          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVL-------IPNLEWTG  203 (299)
Q Consensus       132 ttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a-------~~N~~~~g  203 (299)
                      +...+...++..+..       ..+.+|||+|||+|.+++.++.+ |+.+|++||+++.++ +.+       ++|++.+|
T Consensus       226 t~p~~v~~ml~~l~l-------~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l-~~A~~Ml~~ar~~~~~~G  297 (433)
T 1u2z_A          226 LLPNFLSDVYQQCQL-------KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDAS-DLTILQYEELKKRCKLYG  297 (433)
T ss_dssp             BCHHHHHHHHHHTTC-------CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHhcCC-------CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHhHHHHHHHHHHcC
Confidence            334444555555532       35789999999999999998875 777899999999997 888       99999988


Q ss_pred             CC-CcEEEEEcchh-hH--HHHHhhhcCCCCCeeEEEEcCC
Q 022298          204 FL-DVSSIHTVRVE-TF--LERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       204 ~~-~~~~vi~~D~~-~~--l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      +. ++++++++|.. ..  +...      .+.||+|+++..
T Consensus       298 l~~~nV~~i~gD~~~~~~~~~~~------~~~FDvIvvn~~  332 (433)
T 1u2z_A          298 MRLNNVEFSLKKSFVDNNRVAEL------IPQCDVILVNNF  332 (433)
T ss_dssp             BCCCCEEEEESSCSTTCHHHHHH------GGGCSEEEECCT
T ss_pred             CCCCceEEEEcCccccccccccc------cCCCCEEEEeCc
Confidence            53 46888887643 21  1111      257999999754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.75  E-value=1.1e-08  Score=87.47  Aligned_cols=76  Identities=18%  Similarity=0.151  Sum_probs=62.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+|..+|+++|+|+.++ +.+++|...   ..+++++.+|+.+..       ...+.||+
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~-~~a~~~~~~---~~~i~~~~~d~~~~~-------~~~~~fD~  110 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVV-AAMQACYAH---VPQLRWETMDVRKLD-------FPSASFDV  110 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHH-HHHHHHTTT---CTTCEEEECCTTSCC-------SCSSCEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHH-HHHHHhccc---CCCcEEEEcchhcCC-------CCCCcccE
Confidence            4789999999999999999988876899999999998 999998764   235788999987641       12468999


Q ss_pred             EEEcCCC
Q 022298          235 MSVTPPY  241 (299)
Q Consensus       235 I~iDPPY  241 (299)
                      |++++++
T Consensus       111 v~~~~~~  117 (215)
T 2pxx_A          111 VLEKGTL  117 (215)
T ss_dssp             EEEESHH
T ss_pred             EEECcch
Confidence            9998876

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.75  E-value=2.9e-08  Score=87.11  Aligned_cols=91  Identities=13%  Similarity=0.062  Sum_probs=68.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      .+|.++.+.+.++..+.        ..+.+|||+|||+|.+++.++.+|+ +|+++|+++.++ +.+++|     . .++
T Consensus        30 ~~~~~~~l~~~~~~~~~--------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~-----~-~~~   93 (226)
T 3m33_A           30 SGPDPELTFDLWLSRLL--------TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELL-KLARAN-----A-PHA   93 (226)
T ss_dssp             SSSCTTHHHHHHHHHHC--------CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHH-HHHHHH-----C-TTS
T ss_pred             CCCCHHHHHHHHHHhcC--------CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHh-----C-CCc
Confidence            46766666665554332        2578999999999999999888876 799999999998 899888     2 247


Q ss_pred             EEEEcchhhHHHHHhhhcCC-CCCeeEEEEcCCC
Q 022298          209 SIHTVRVETFLERAEQFVGK-DGPFDYMSVTPPY  241 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~-~~~fDlI~iDPPY  241 (299)
                      +++++|+.+.+.      .. .++||+|++++..
T Consensus        94 ~~~~~d~~~~~~------~~~~~~fD~v~~~~~~  121 (226)
T 3m33_A           94 DVYEWNGKGELP------AGLGAPFGLIVSRRGP  121 (226)
T ss_dssp             EEEECCSCSSCC------TTCCCCEEEEEEESCC
T ss_pred             eEEEcchhhccC------CcCCCCEEEEEeCCCH
Confidence            899999854321      12 4689999998543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.75  E-value=2.2e-08  Score=91.74  Aligned_cols=49  Identities=18%  Similarity=0.232  Sum_probs=40.6

Q ss_pred             CCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g  203 (299)
                      ..+.+|||+|||+|.+++.++.+ +..+|++||+|+.++ +.+++|++..+
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i-~~A~~~~~~~~   94 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLI-HSARQNIRHYL   94 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHH-HHHHHTC----
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHhhh
Confidence            35789999999999999998876 556899999999998 99999987665

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.74  E-value=5.5e-08  Score=88.70  Aligned_cols=85  Identities=8%  Similarity=0.023  Sum_probs=64.4

Q ss_pred             CCCEEEEECCccchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHh-CCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS--rGa~~V~~VD~n~~Al~~~a~~N~~~~-g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .+.+|||+|||+|.+++.++.  .+..+|+++|+++.++ +.+++|++.. +...+++++++|+.++..... .....++
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~~  113 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMI-KTAEVIKEGSPDTYKNVSFKISSSDDFKFLGA-DSVDKQK  113 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHH-HHHHHHHHHCC-CCTTEEEEECCTTCCGGGCT-TTTTSSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHH-HHHHHHHHhccCCCCceEEEEcCHHhCCcccc-ccccCCC
Confidence            578999999999999998875  3566899999999998 9999999887 444569999999876431000 0000268


Q ss_pred             eeEEEEcCCC
Q 022298          232 FDYMSVTPPY  241 (299)
Q Consensus       232 fDlI~iDPPY  241 (299)
                      ||+|++.-..
T Consensus       114 fD~V~~~~~l  123 (299)
T 3g5t_A          114 IDMITAVECA  123 (299)
T ss_dssp             EEEEEEESCG
T ss_pred             eeEEeHhhHH
Confidence            9999997654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.74  E-value=2.9e-08  Score=89.37  Aligned_cols=80  Identities=16%  Similarity=0.007  Sum_probs=66.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|..+|+++|+++.++ +.+++|+...+...+++++++|+.+..     + ...+.||+
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~~fD~  136 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI-NDARVRARNMKRRFKVFFRAQDSYGRH-----M-DLGKEFDV  136 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHH-HHHHHHHHTSCCSSEEEEEESCTTTSC-----C-CCSSCEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCccEEEEECCccccc-----c-CCCCCcCE
Confidence            5789999999999999988888877899999999998 999999998887667899999987641     0 12468999


Q ss_pred             EEEcCCC
Q 022298          235 MSVTPPY  241 (299)
Q Consensus       235 I~iDPPY  241 (299)
                      |+++-..
T Consensus       137 v~~~~~l  143 (298)
T 1ri5_A          137 ISSQFSF  143 (298)
T ss_dssp             EEEESCG
T ss_pred             EEECchh
Confidence            9988543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.74  E-value=1.9e-08  Score=92.88  Aligned_cols=94  Identities=20%  Similarity=0.205  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCE---EEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE---VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~---V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi  211 (299)
                      .+.+.+.+.+..       ..+.+|||+|||+|.++..++.++..+   |++||+|+.++ +.+++|.     .++++++
T Consensus        29 ~i~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l-~~a~~~~-----~~~v~~i   95 (279)
T 3uzu_A           29 GVIDAIVAAIRP-------ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLI-GRLEQRF-----GELLELH   95 (279)
T ss_dssp             HHHHHHHHHHCC-------CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHH-HHHHHHH-----GGGEEEE
T ss_pred             HHHHHHHHhcCC-------CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHH-HHHHHhc-----CCCcEEE
Confidence            456666666643       357899999999999999988876532   99999999998 9999993     2458999


Q ss_pred             EcchhhHHHHHhhhcCCC-CCeeEEEEcCCCCC
Q 022298          212 TVRVETFLERAEQFVGKD-GPFDYMSVTPPYTA  243 (299)
Q Consensus       212 ~~D~~~~l~~~~~~~~~~-~~fDlI~iDPPY~~  243 (299)
                      ++|+.++.-  ..+.... ...+.|+.|+||..
T Consensus        96 ~~D~~~~~~--~~~~~~~~~~~~~vv~NlPY~i  126 (279)
T 3uzu_A           96 AGDALTFDF--GSIARPGDEPSLRIIGNLPYNI  126 (279)
T ss_dssp             ESCGGGCCG--GGGSCSSSSCCEEEEEECCHHH
T ss_pred             ECChhcCCh--hHhcccccCCceEEEEccCccc
Confidence            999987521  0010000 13468999999984

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.73  E-value=8.6e-08  Score=86.90  Aligned_cols=77  Identities=16%  Similarity=0.209  Sum_probs=65.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.++..++.+ |+ +|+++|+++.++ +.++++++..++.++++++.+|+.+..       ...+.||
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~fD  152 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQN-KRNEEYNNQAGLADNITVKYGSFLEIP-------CEDNSYD  152 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHHHTCTTTEEEEECCTTSCS-------SCTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEEcCcccCC-------CCCCCEe
Confidence            5789999999999999998876 76 799999999998 999999999998777999999987631       1246899


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|++.-.
T Consensus       153 ~v~~~~~  159 (297)
T 2o57_A          153 FIWSQDA  159 (297)
T ss_dssp             EEEEESC
T ss_pred             EEEecch
Confidence            9998644

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.73  E-value=4.5e-08  Score=89.92  Aligned_cols=75  Identities=16%  Similarity=0.072  Sum_probs=65.0

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||+|.+++.++.+ |+ +|+++|+++.++ +.++++++..++.++++++.+|+.++          .+.||
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~fD  157 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQH-ARCEQVLASIDTNRSRQVLLQGWEDF----------AEPVD  157 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCGGGC----------CCCCS
T ss_pred             CcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECChHHC----------CCCcC
Confidence            5789999999999999998877 77 799999999998 99999999888877799999998653          26799


Q ss_pred             EEEEcCCC
Q 022298          234 YMSVTPPY  241 (299)
Q Consensus       234 lI~iDPPY  241 (299)
                      +|++.-..
T Consensus       158 ~v~~~~~l  165 (318)
T 2fk8_A          158 RIVSIEAF  165 (318)
T ss_dssp             EEEEESCG
T ss_pred             EEEEeChH
Confidence            99987543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.72  E-value=4.3e-08  Score=86.75  Aligned_cols=77  Identities=14%  Similarity=0.120  Sum_probs=63.3

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ..+.+|||+|||+|.++..++.+|..+|+++|+++.++ +.++++..    ..+++++++|+.++.       ...++||
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~----~~~~~~~~~d~~~~~-------~~~~~fD  110 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERML-TEAKRKTT----SPVVCYEQKAIEDIA-------IEPDAYN  110 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHCC----CTTEEEEECCGGGCC-------CCTTCEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHhhc----cCCeEEEEcchhhCC-------CCCCCeE
Confidence            36789999999999999999999887899999999998 88888765    345889999987642       1247899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|++.-...
T Consensus       111 ~v~~~~~l~  119 (253)
T 3g5l_A          111 VVLSSLALH  119 (253)
T ss_dssp             EEEEESCGG
T ss_pred             EEEEchhhh
Confidence            999876543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.72  E-value=6.1e-08  Score=87.46  Aligned_cols=73  Identities=18%  Similarity=0.125  Sum_probs=62.9

Q ss_pred             CCCEEEEECCccchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAl-SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||+|.+++.++ ..|+ +|+++|+++.++ +.++++++..+..++++++.+|+.++          .++||
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~----------~~~fD  131 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQA-NHVQQLVANSENLRSKRVLLAGWEQF----------DEPVD  131 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTCCCCSCEEEEESCGGGC----------CCCCS
T ss_pred             CcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCCCCeEEEECChhhC----------CCCee
Confidence            57899999999999999888 4576 899999999998 99999999888877799999998653          26899


Q ss_pred             EEEEcC
Q 022298          234 YMSVTP  239 (299)
Q Consensus       234 lI~iDP  239 (299)
                      +|++.-
T Consensus       132 ~v~~~~  137 (287)
T 1kpg_A          132 RIVSIG  137 (287)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            999863

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.72  E-value=1.9e-08  Score=88.69  Aligned_cols=77  Identities=16%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.++..+|+++|+++.++ +.+++|+...+. .+++++.+|+.++.       ...++||+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~~~~~~~d~~~~~-------~~~~~fD~  149 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGK-RVRNYFCCGLQDFT-------PEPDSYDV  149 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHH-HHHHHHTGGGGG-GEEEEEECCGGGCC-------CCSSCEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHhhhcCC-ceEEEEEcChhhcC-------CCCCCEEE
Confidence            4789999999999999988888776899999999998 999999877652 35788999987642       12358999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |+++-.
T Consensus       150 v~~~~~  155 (241)
T 2ex4_A          150 IWIQWV  155 (241)
T ss_dssp             EEEESC
T ss_pred             EEEcch
Confidence            998843

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.72  E-value=5.2e-08  Score=86.01  Aligned_cols=77  Identities=18%  Similarity=0.105  Sum_probs=64.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.++. +|+++|+++.++ +.+++|++..+.. +++++++|+.++.       ...+.||+
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~~~-------~~~~~fD~   90 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMV-EVASSFAQEKGVE-NVRFQQGTAESLP-------FPDDSFDI   90 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHH-HHHHHHHHHHTCC-SEEEEECBTTBCC-------SCTTCEEE
T ss_pred             CCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHH-HHHHHHHHHcCCC-CeEEEecccccCC-------CCCCcEEE
Confidence            578999999999999998888875 799999999998 9999999988875 4889999987531       12468999


Q ss_pred             EEEcCCC
Q 022298          235 MSVTPPY  241 (299)
Q Consensus       235 I~iDPPY  241 (299)
                      |++.-..
T Consensus        91 v~~~~~l   97 (239)
T 1xxl_A           91 ITCRYAA   97 (239)
T ss_dssp             EEEESCG
T ss_pred             EEECCch
Confidence            9987543

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.71  E-value=1.7e-08  Score=105.10  Aligned_cols=108  Identities=14%  Similarity=0.107  Sum_probs=71.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC----CCEEEEEeCCHHHHHHHH--HHHHHH
Q 022298          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG----CSEVHFVEMDPWVVSNVL--IPNLEW  201 (299)
Q Consensus       128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG----a~~V~~VD~n~~Al~~~a--~~N~~~  201 (299)
                      +.-+|...+.+.+.+.+....+ .....+.+|||+|||||++.++++.+.    ..+++++|+|+.++ +++  +.|+..
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~-~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al-~LAK~RlNL~l  372 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILG-RPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFL-ELLSIRLGLLF  372 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHC-SCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGH-HHHHHHHHTTS
T ss_pred             ceEcCCHHHHHHHHHHHhhhcc-ccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHH-HHHHHHHHHHH
Confidence            4567777777777666211000 001247899999999999999988753    23699999999998 899  778766


Q ss_pred             hCCCC---cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          202 TGFLD---VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       202 ~g~~~---~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +++..   ...+...|......      ....+||+|++||||..
T Consensus       373 N~LlhGi~~~~I~~dD~L~~~~------~~~~kFDVVIgNPPYg~  411 (878)
T 3s1s_A          373 PQLVSSNNAPTITGEDVCSLNP------EDFANVSVVVMNPPYVS  411 (878)
T ss_dssp             TTTCBTTBCCEEECCCGGGCCG------GGGTTEEEEEECCBCCS
T ss_pred             hhhhcCCCcceEEecchhcccc------cccCCCCEEEECCCccc
Confidence            43321   12455556554210      01368999999999964

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.71  E-value=2.3e-08  Score=86.32  Aligned_cols=74  Identities=11%  Similarity=0.094  Sum_probs=62.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|. +|+++|+++.++ +.+++|+...+   +++++++|+.++.        ..++||+
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~---~~~~~~~d~~~~~--------~~~~fD~  117 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAI-GRACQRTKRWS---HISWAATDILQFS--------TAELFDL  117 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHH-HHHHHHTTTCS---SEEEEECCTTTCC--------CSCCEEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHhcccCC---CeEEEEcchhhCC--------CCCCccE
Confidence            567999999999999998888875 799999999998 99999876543   5899999988753        2478999


Q ss_pred             EEEcCCC
Q 022298          235 MSVTPPY  241 (299)
Q Consensus       235 I~iDPPY  241 (299)
                      |++....
T Consensus       118 v~~~~~l  124 (216)
T 3ofk_A          118 IVVAEVL  124 (216)
T ss_dssp             EEEESCG
T ss_pred             EEEccHH
Confidence            9997543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.71  E-value=5.7e-08  Score=85.74  Aligned_cols=72  Identities=22%  Similarity=0.198  Sum_probs=61.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||+|.+++.++.+|+ +|+++|+++.++ +.+++|+...+.  +++++++|+.++.        ..++||+
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~~~~~--~v~~~~~d~~~~~--------~~~~fD~  108 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEML-RVARRKAKERNL--KIEFLQGDVLEIA--------FKNEFDA  108 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CCEEEESCGGGCC--------CCSCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHhcCC--ceEEEECChhhcc--------cCCCccE
Confidence            467999999999999999988886 799999999998 999999988775  3789999987642        1367999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++.
T Consensus       109 v~~~  112 (252)
T 1wzn_A          109 VTMF  112 (252)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9974

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.71  E-value=3.4e-08  Score=92.97  Aligned_cols=78  Identities=13%  Similarity=-0.042  Sum_probs=63.4

Q ss_pred             CEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298          157 GRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM  235 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI  235 (299)
                      .+|||+|||+|.++.+++. ....+|++||+|+.++ +.+++|+.... ..+++++.+|+.+++...     ..++||+|
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi-~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~-----~~~~fDvI  163 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELA-RLSREWFDIPR-APRVKIRVDDARMVAESF-----TPASRDVI  163 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHH-HHHHHHSCCCC-TTTEEEEESCHHHHHHTC-----CTTCEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHH-HHHHHhccccC-CCceEEEECcHHHHHhhc-----cCCCCCEE
Confidence            4999999999999999888 3334899999999998 99999875432 356999999999987532     24689999


Q ss_pred             EEcCCC
Q 022298          236 SVTPPY  241 (299)
Q Consensus       236 ~iDPPY  241 (299)
                      ++|.+.
T Consensus       164 i~D~~~  169 (317)
T 3gjy_A          164 IRDVFA  169 (317)
T ss_dssp             EECCST
T ss_pred             EECCCC
Confidence            999643

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.71  E-value=4.7e-08  Score=85.36  Aligned_cols=78  Identities=12%  Similarity=0.083  Sum_probs=63.3

Q ss_pred             CCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .++.+|||+|||+|.++..++.+. ..+|+++|+++.++ +.+++++...+   +++++++|+.+..        ..+.|
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~---~~~~~~~d~~~~~--------~~~~f  110 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKML-EIAKNRFRGNL---KVKYIEADYSKYD--------FEEKY  110 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTCSCT---TEEEEESCTTTCC--------CCSCE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHhhccCC---CEEEEeCchhccC--------CCCCc
Confidence            357899999999999999988873 44799999999998 99999876554   5889999987642        12689


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+|++......
T Consensus       111 D~v~~~~~l~~  121 (234)
T 3dtn_A          111 DMVVSALSIHH  121 (234)
T ss_dssp             EEEEEESCGGG
T ss_pred             eEEEEeCcccc
Confidence            99999876543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.70  E-value=2.5e-08  Score=90.60  Aligned_cols=91  Identities=13%  Similarity=0.049  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCE--EEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE--VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~--V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~  213 (299)
                      +.+.+.+.+..       ..+.+|||+|||+|.++. + .++ .+  |++||+|+.++ +.+++|+...   ++++++++
T Consensus         9 i~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~-l-~~~-~~~~v~avEid~~~~-~~a~~~~~~~---~~v~~i~~   74 (252)
T 1qyr_A            9 VIDSIVSAINP-------QKGQAMVEIGPGLAALTE-P-VGE-RLDQLTVIELDRDLA-ARLQTHPFLG---PKLTIYQQ   74 (252)
T ss_dssp             HHHHHHHHHCC-------CTTCCEEEECCTTTTTHH-H-HHT-TCSCEEEECCCHHHH-HHHHTCTTTG---GGEEEECS
T ss_pred             HHHHHHHhcCC-------CCcCEEEEECCCCcHHHH-h-hhC-CCCeEEEEECCHHHH-HHHHHHhccC---CceEEEEC
Confidence            44555555532       256799999999999999 4 555 46  99999999998 9999887543   35899999


Q ss_pred             chhhHH-HHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          214 RVETFL-ERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       214 D~~~~l-~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      |+.++- ...  . ......|.|+.|+||..
T Consensus        75 D~~~~~~~~~--~-~~~~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           75 DAMTFNFGEL--A-EKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             CGGGCCHHHH--H-HHHTSCEEEEEECCTTT
T ss_pred             chhhCCHHHh--h-cccCCceEEEECCCCCc
Confidence            998742 211  0 00024589999999985

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.70  E-value=4.6e-08  Score=84.67  Aligned_cols=79  Identities=16%  Similarity=0.277  Sum_probs=65.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC----CcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL----DVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~----~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+|||+|||+|.+++.++.+|+ +|+++|+++.++ +.+++|+...++.    ++++++.+|+..+.       ...+
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~  100 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAI-RLAETAARSPGLNQKTGGKAEFKVENASSLS-------FHDS  100 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHTTCCSCCSSSSCEEEEEECCTTSCC-------SCTT
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHH-HHHHHHHHhcCCccccCcceEEEEecccccC-------CCCC
Confidence            478999999999999999998877 799999999998 9999998877762    35788999987542       1247


Q ss_pred             CeeEEEEcCCCC
Q 022298          231 PFDYMSVTPPYT  242 (299)
Q Consensus       231 ~fDlI~iDPPY~  242 (299)
                      .||+|++...+.
T Consensus       101 ~~D~v~~~~~l~  112 (235)
T 3sm3_A          101 SFDFAVMQAFLT  112 (235)
T ss_dssp             CEEEEEEESCGG
T ss_pred             ceeEEEEcchhh
Confidence            899999976544

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.70  E-value=8.8e-10  Score=98.67  Aligned_cols=77  Identities=14%  Similarity=0.216  Sum_probs=62.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+| .+|+++|+|+.++ +.+++|++  + .++++++++|+.++.     + ...++| .
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~-~~a~~~~~--~-~~~v~~~~~D~~~~~-----~-~~~~~f-~   96 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLF-NLSSEKLK--L-NTRVTLIHQDILQFQ-----F-PNKQRY-K   96 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSS-SSSSCTTT--T-CSEEEECCSCCTTTT-----C-CCSSEE-E
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHH-HHHHHHhc--c-CCceEEEECChhhcC-----c-ccCCCc-E
Confidence            57799999999999999998887 5799999999998 89988876  2 346889999987652     0 112568 8


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++||||..
T Consensus        97 vv~n~Py~~  105 (245)
T 1yub_A           97 IVGNIPYHL  105 (245)
T ss_dssp             EEEECCSSS
T ss_pred             EEEeCCccc
Confidence            999999986

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.69  E-value=1.7e-08  Score=92.69  Aligned_cols=80  Identities=8%  Similarity=-0.088  Sum_probs=67.0

Q ss_pred             CCCEEEEECCccchHHHHHH--HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAI--SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAl--SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|.+++.++  .....+|+++|+++.++ +.+++|+...+..++++++++|+.+..       . .+.|
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~-~~~f  188 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEAL-DGATRLAAGHALAGQITLHRQDAWKLD-------T-REGY  188 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHH-HHHHHHHTTSTTGGGEEEEECCGGGCC-------C-CSCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECchhcCC-------c-cCCe
Confidence            57899999999999998763  33345899999999998 999999999888878999999988742       1 2789


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+|+++.++..
T Consensus       189 D~v~~~~~~~~  199 (305)
T 3ocj_A          189 DLLTSNGLNIY  199 (305)
T ss_dssp             EEEECCSSGGG
T ss_pred             EEEEECChhhh
Confidence            99999887653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.68  E-value=4.2e-08  Score=86.42  Aligned_cols=89  Identities=17%  Similarity=0.103  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      .|+..+.+.+.+...+...      ..+.+|||+|||+|.++..++.+|+ +|+++|+|+.++ +.++++         +
T Consensus        21 ~~~~~~~~~~~~~~~l~~~------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~---------~   83 (240)
T 3dli_A           21 FRGSRELVKARLRRYIPYF------KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMI-KFCEGK---------F   83 (240)
T ss_dssp             HTCCHHHHHHHHGGGGGGT------TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHH-HHHHTT---------S
T ss_pred             hCCCHHHHHHHHHHHHhhh------cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHH-HHHHhh---------c
Confidence            4666666666665555432      2468999999999999998888887 499999999998 888776         4


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      +++.+|+.+++...     ..++||+|++.-
T Consensus        84 ~~~~~d~~~~~~~~-----~~~~fD~i~~~~  109 (240)
T 3dli_A           84 NVVKSDAIEYLKSL-----PDKYLDGVMISH  109 (240)
T ss_dssp             EEECSCHHHHHHTS-----CTTCBSEEEEES
T ss_pred             ceeeccHHHHhhhc-----CCCCeeEEEECC
Confidence            57888988765321     247899999853

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.68  E-value=5.7e-08  Score=97.52  Aligned_cols=75  Identities=21%  Similarity=0.248  Sum_probs=63.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||.|.++..++.+|+ .|++||.++.++ +.++..+...+..+ +++.+++++++....     ..++||+
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i-~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~-----~~~~fD~  137 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENI-NVCRALAEENPDFA-AEFRVGRIEEVIAAL-----EEGEFDL  137 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTSTTSE-EEEEECCHHHHHHHC-----CTTSCSE
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHH-HHHHHHHHhcCCCc-eEEEECCHHHHhhhc-----cCCCccE
Confidence            467999999999999998888998 599999999998 99999988776433 889999999876432     2468999


Q ss_pred             EEE
Q 022298          235 MSV  237 (299)
Q Consensus       235 I~i  237 (299)
                      |++
T Consensus       138 v~~  140 (569)
T 4azs_A          138 AIG  140 (569)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.68  E-value=2.9e-08  Score=86.13  Aligned_cols=77  Identities=13%  Similarity=-0.079  Sum_probs=59.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC-----------CCCcEEEEEcchhhHHHHHh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG-----------FLDVSSIHTVRVETFLERAE  223 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g-----------~~~~~~vi~~D~~~~l~~~~  223 (299)
                      .+.+|||+|||+|..+..++.+|. +|++||+|+.++ +.++++.+...           ...+++++++|+.++.... 
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~-   98 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAV-ERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD-   98 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHH-HHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH-
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHH-HHHHHHccCCcccccccccccccCCccEEEECccccCCccc-
Confidence            578999999999999999888887 799999999998 89988754210           0235789999987753210 


Q ss_pred             hhcCCCCCeeEEEEcC
Q 022298          224 QFVGKDGPFDYMSVTP  239 (299)
Q Consensus       224 ~~~~~~~~fDlI~iDP  239 (299)
                           .++||+|++.-
T Consensus        99 -----~~~fD~v~~~~  109 (203)
T 1pjz_A           99 -----IGHCAAFYDRA  109 (203)
T ss_dssp             -----HHSEEEEEEES
T ss_pred             -----CCCEEEEEECc
Confidence                 15799999643

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.67  E-value=3.9e-08  Score=86.85  Aligned_cols=95  Identities=13%  Similarity=0.065  Sum_probs=70.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      .+|......+.+++.+..       ..+.+|||+|||+|.+++.++.+ |+ +|+++|+++.++ +.++++....   .+
T Consensus        36 ~~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~-~~a~~~~~~~---~~  103 (266)
T 3ujc_A           36 ISSGGLEATKKILSDIEL-------NENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIV-NMANERVSGN---NK  103 (266)
T ss_dssp             CSTTHHHHHHHHTTTCCC-------CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHTCCSC---TT
T ss_pred             cccchHHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHhhcC---CC
Confidence            455555555555444421       35789999999999999998887 55 799999999998 8998887544   45


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      ++++++|+.+..       ...++||+|++.-...
T Consensus       104 ~~~~~~d~~~~~-------~~~~~fD~v~~~~~l~  131 (266)
T 3ujc_A          104 IIFEANDILTKE-------FPENNFDLIYSRDAIL  131 (266)
T ss_dssp             EEEEECCTTTCC-------CCTTCEEEEEEESCGG
T ss_pred             eEEEECccccCC-------CCCCcEEEEeHHHHHH
Confidence            889999987641       1247899999875443

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.66  E-value=2e-08  Score=88.04  Aligned_cols=79  Identities=16%  Similarity=-0.017  Sum_probs=64.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ..+.+|||+|||+|.++..++..|+ +|+++|+++.++ +.+++|+...+..++++++++|+.++.        ..+.||
T Consensus        65 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~fD  134 (235)
T 3lcc_A           65 LPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESAL-AKANETYGSSPKAEYFSFVKEDVFTWR--------PTELFD  134 (235)
T ss_dssp             SCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHH-HHHHHHHTTSGGGGGEEEECCCTTTCC--------CSSCEE
T ss_pred             CCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHH-HHHHHHhhccCCCcceEEEECchhcCC--------CCCCee
Confidence            3456999999999999998777666 699999999998 999999877655566899999988743        235899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|++...+.
T Consensus       135 ~v~~~~~l~  143 (235)
T 3lcc_A          135 LIFDYVFFC  143 (235)
T ss_dssp             EEEEESSTT
T ss_pred             EEEEChhhh
Confidence            999876554

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.66  E-value=1.3e-07  Score=82.37  Aligned_cols=90  Identities=12%  Similarity=0.131  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (299)
Q Consensus       133 td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~  212 (299)
                      .+.+.+.+...+....     ..+.+|||+|||+|.++..++.+|. +++++|+++.++ +.++++....+.  ++++++
T Consensus        20 ~~~~~~~~~~~l~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~-~~a~~~~~~~~~--~~~~~~   90 (246)
T 1y8c_A           20 YKKWSDFIIEKCVENN-----LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEML-SEAENKFRSQGL--KPRLAC   90 (246)
T ss_dssp             HHHHHHHHHHHHHTTT-----CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHH-HHHHHHHHHTTC--CCEEEC
T ss_pred             HHHHHHHHHHHHHHhC-----CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHH-HHHHHHHhhcCC--CeEEEe
Confidence            4455666666665421     2578999999999999998888876 699999999998 999999988775  478899


Q ss_pred             cchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          213 VRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       213 ~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      +|+.++.        ..+.||+|++..
T Consensus        91 ~d~~~~~--------~~~~fD~v~~~~  109 (246)
T 1y8c_A           91 QDISNLN--------INRKFDLITCCL  109 (246)
T ss_dssp             CCGGGCC--------CSCCEEEEEECT
T ss_pred             cccccCC--------ccCCceEEEEcC
Confidence            9987642        126899999987

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.65  E-value=6.8e-08  Score=85.05  Aligned_cols=76  Identities=14%  Similarity=0.118  Sum_probs=62.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.++..+|+++|+++.++ +.+++|+...   .+++++++|+.++.       ...+.||+
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~---~~~~~~~~d~~~~~-------~~~~~fD~  161 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGM---PVGKFILASMETAT-------LPPNTYDL  161 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-HHHHHHTTTS---SEEEEEESCGGGCC-------CCSSCEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHH-HHHHHHhccC---CceEEEEccHHHCC-------CCCCCeEE
Confidence            5789999999999999998888777899999999998 9999887554   45889999987642       12468999


Q ss_pred             EEEcCCC
Q 022298          235 MSVTPPY  241 (299)
Q Consensus       235 I~iDPPY  241 (299)
                      |++.-..
T Consensus       162 v~~~~~l  168 (254)
T 1xtp_A          162 IVIQWTA  168 (254)
T ss_dssp             EEEESCG
T ss_pred             EEEcchh
Confidence            9986643

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.65  E-value=3e-08  Score=99.09  Aligned_cols=103  Identities=19%  Similarity=0.154  Sum_probs=75.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc----C----------CCEEEEEeCCHHHHHHH
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----G----------CSEVHFVEMDPWVVSNV  194 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr----G----------a~~V~~VD~n~~Al~~~  194 (299)
                      --.|+..|.+.+..++..       ..+.+|+|++||||+|-++|..+    +          -..++++|+|+.++ .+
T Consensus       198 qfyTP~~Vv~lmv~l~~p-------~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~-~l  269 (530)
T 3ufb_A          198 EFYTPRPVVRFMVEVMDP-------QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPY-LL  269 (530)
T ss_dssp             CCCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHH-HH
T ss_pred             eECCcHHHHHHHHHhhcc-------CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHH-HH
Confidence            345666677777777764       25679999999999999987642    1          13599999999998 99


Q ss_pred             HHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          195 LIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       195 a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++-|+-..|... ..+..+|........   .....+||+|+.||||+.
T Consensus       270 a~mNl~lhg~~~-~~I~~~dtL~~~~~~---~~~~~~fD~Il~NPPf~~  314 (530)
T 3ufb_A          270 VQMNLLLHGLEY-PRIDPENSLRFPLRE---MGDKDRVDVILTNPPFGG  314 (530)
T ss_dssp             HHHHHHHHTCSC-CEEECSCTTCSCGGG---CCGGGCBSEEEECCCSSC
T ss_pred             HHHHHHhcCCcc-ccccccccccCchhh---hcccccceEEEecCCCCc
Confidence            999999888754 467778865431000   011357999999999974

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.65  E-value=1.1e-07  Score=85.05  Aligned_cols=79  Identities=15%  Similarity=0.159  Sum_probs=66.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||+|.++..++.++ ..+|+++|+++.++ +.+++|+...+..+ ++++.+|+.+..       ...++||
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-~~~~~~d~~~~~-------~~~~~fD  107 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESL-EKARENTEKNGIKN-VKFLQANIFSLP-------FEDSSFD  107 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEECCGGGCC-------SCTTCEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCC-cEEEEcccccCC-------CCCCCee
Confidence            57899999999999999988874 45899999999998 99999999988764 899999988642       1247899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|+++-.+.
T Consensus       108 ~v~~~~~l~  116 (276)
T 3mgg_A          108 HIFVCFVLE  116 (276)
T ss_dssp             EEEEESCGG
T ss_pred             EEEEechhh
Confidence            999876543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.65  E-value=5.7e-08  Score=88.59  Aligned_cols=74  Identities=20%  Similarity=0.256  Sum_probs=61.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC--CcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~--~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|.++..++.+|. +|+++|+++.++ +.+++++...+..  .+++++++|+.++.        ..+.|
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~f  151 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVL-AAFRKRLAEAPADVRDRCTLVQGDMSAFA--------LDKRF  151 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHH-HHHHHHHHTSCHHHHTTEEEEECBTTBCC--------CSCCE
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHHHHhhcccccccceEEEeCchhcCC--------cCCCc
Confidence            355999999999999999888886 599999999998 9999999876632  45899999988742        14789


Q ss_pred             eEEEEc
Q 022298          233 DYMSVT  238 (299)
Q Consensus       233 DlI~iD  238 (299)
                      |+|++.
T Consensus       152 D~v~~~  157 (299)
T 3g2m_A          152 GTVVIS  157 (299)
T ss_dssp             EEEEEC
T ss_pred             CEEEEC
Confidence            998864

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.65  E-value=1.3e-07  Score=84.53  Aligned_cols=79  Identities=14%  Similarity=0.019  Sum_probs=61.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHh------CCCCcEEEEEcchhhHHHHHhhhcC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWT------GFLDVSSIHTVRVETFLERAEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~------g~~~~~~vi~~D~~~~l~~~~~~~~  227 (299)
                      .+.+|||+|||+|.+.+.++.+. ...|++||+++.++ +.+++|++.+      +.. +++++++|+.+.+...    -
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l-~~A~~~~~~l~~~~~~~~~-nv~~~~~d~~~~l~~~----~  119 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVS-DYVQDRIRALRAAPAGGFQ-NIACLRSNAMKHLPNF----F  119 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHH-HHHHHHHHHHHHSTTCCCT-TEEEEECCTTTCHHHH----C
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHHHHHHhcCCC-eEEEEECcHHHhhhhh----C
Confidence            46789999999999999877663 45799999999998 9999998753      443 4899999998755321    1


Q ss_pred             CCCCeeEEEEcC
Q 022298          228 KDGPFDYMSVTP  239 (299)
Q Consensus       228 ~~~~fDlI~iDP  239 (299)
                      ..+.||.|+++-
T Consensus       120 ~~~~~D~v~~~~  131 (235)
T 3ckk_A          120 YKGQLTKMFFLF  131 (235)
T ss_dssp             CTTCEEEEEEES
T ss_pred             CCcCeeEEEEeC
Confidence            246899998753

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.64  E-value=5.4e-08  Score=84.68  Aligned_cols=82  Identities=17%  Similarity=0.112  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~  215 (299)
                      ..+.+...+...      ..+.+|||+|||+|.++..++.+|. +|+++|+++.++ +.++++...     +++++++|+
T Consensus        29 ~~~~~~~~l~~~------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~-----~v~~~~~d~   95 (250)
T 2p7i_A           29 MHPFMVRAFTPF------FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAI-SHAQGRLKD-----GITYIHSRF   95 (250)
T ss_dssp             HHHHHHHHHGGG------CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHH-HHHHHHSCS-----CEEEEESCG
T ss_pred             HHHHHHHHHHhh------cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHH-HHHHHhhhC-----CeEEEEccH
Confidence            444555666542      3578999999999999998888877 699999999998 888887532     478999998


Q ss_pred             hhHHHHHhhhcCCCCCeeEEEEc
Q 022298          216 ETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       216 ~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      .+..        ..++||+|++.
T Consensus        96 ~~~~--------~~~~fD~v~~~  110 (250)
T 2p7i_A           96 EDAQ--------LPRRYDNIVLT  110 (250)
T ss_dssp             GGCC--------CSSCEEEEEEE
T ss_pred             HHcC--------cCCcccEEEEh
Confidence            7752        24689999973

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.63  E-value=5.8e-08  Score=88.88  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=55.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||+|.+++.++.+|+ +|++||+|+.++ +.+++|+....       ++.++.+......  ....++||+
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml-~~Ar~~~~~~~-------v~~~~~~~~~~~~--~~~~~~fD~  113 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMC-DDLAEALADRC-------VTIDLLDITAEIP--KELAGHFDF  113 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHTSSSC-------CEEEECCTTSCCC--GGGTTCCSE
T ss_pred             CcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHhcc-------ceeeeeecccccc--cccCCCccE
Confidence            578999999999999999999987 799999999998 99999976541       1222222110000  001368999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |+++....
T Consensus       114 Vv~~~~l~  121 (261)
T 3iv6_A          114 VLNDRLIN  121 (261)
T ss_dssp             EEEESCGG
T ss_pred             EEEhhhhH
Confidence            99998654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.63  E-value=1.9e-07  Score=80.09  Aligned_cols=86  Identities=21%  Similarity=0.198  Sum_probs=64.4

Q ss_pred             HHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022298          138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (299)
Q Consensus       138 ealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~  217 (299)
                      ..++..+..       ..+.+|||+|||+|.++..++.+|+ +|+++|+++.++ +.++++       ....++.+|+.+
T Consensus        42 ~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~-------~~~~~~~~~~~~  105 (227)
T 3e8s_A           42 QAILLAILG-------RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLV-DAARAA-------GAGEVHLASYAQ  105 (227)
T ss_dssp             HHHHHHHHH-------TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHH-HHHHHT-------CSSCEEECCHHH
T ss_pred             HHHHHHhhc-------CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHh-------cccccchhhHHh
Confidence            445555554       3578999999999999999888877 799999999998 888887       224578888877


Q ss_pred             HHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          218 FLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       218 ~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      +....   .....+||+|++...+.
T Consensus       106 ~~~~~---~~~~~~fD~v~~~~~l~  127 (227)
T 3e8s_A          106 LAEAK---VPVGKDYDLICANFALL  127 (227)
T ss_dssp             HHTTC---SCCCCCEEEEEEESCCC
T ss_pred             hcccc---cccCCCccEEEECchhh
Confidence            53211   11235699999987766

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.62  E-value=1.5e-07  Score=80.26  Aligned_cols=74  Identities=15%  Similarity=0.018  Sum_probs=61.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+ +|||+|||+|.++..++.+|+ +|+++|+++.++ +.++++....+.  +++++++|+.+..       ...+.||+
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~-------~~~~~fD~   97 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGL-AKAKQLAQEKGV--KITTVQSNLADFD-------IVADAWEG   97 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHH-HHHHHHHHHHTC--CEEEECCBTTTBS-------CCTTTCSE
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEcChhhcC-------CCcCCccE
Confidence            35 999999999999998888876 799999999998 999999988876  4788999987642       12468999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |++...
T Consensus        98 v~~~~~  103 (202)
T 2kw5_A           98 IVSIFC  103 (202)
T ss_dssp             EEEECC
T ss_pred             EEEEhh
Confidence            998643

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.62  E-value=1.3e-07  Score=82.42  Aligned_cols=76  Identities=14%  Similarity=0.006  Sum_probs=62.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|..+|+++|+++.++ +.++++...    ++++++++|+.+..       ...+.||+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~----~~~~~~~~d~~~~~-------~~~~~fD~  110 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKML-ARARAAGPD----TGITYERADLDKLH-------LPQDSFDL  110 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTSCS----SSEEEEECCGGGCC-------CCTTCEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHH-HHHHHhccc----CCceEEEcChhhcc-------CCCCCceE
Confidence            5789999999999999998888876899999999998 888887643    24889999987642       12468999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++.....
T Consensus       111 v~~~~~l~  118 (243)
T 3bkw_A          111 AYSSLALH  118 (243)
T ss_dssp             EEEESCGG
T ss_pred             EEEecccc
Confidence            99987654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.61  E-value=9.1e-08  Score=83.79  Aligned_cols=80  Identities=16%  Similarity=0.076  Sum_probs=64.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHHHHHhC-----CCCcEEEEEcchhhHHHHH
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GC------SEVHFVEMDPWVVSNVLIPNLEWTG-----FLDVSSIHTVRVETFLERA  222 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga------~~V~~VD~n~~Al~~~a~~N~~~~g-----~~~~~~vi~~D~~~~l~~~  222 (299)
                      ++.+|||+|||+|.++..++.+ |.      .+|+++|+++.++ +.+++|++.++     . ++++++.+|+.+.+.  
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~--  159 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV-RRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYP--  159 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHH-HHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCG--
T ss_pred             CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHH-HHHHHHHHhcCccccCC-CceEEEECCcccCCC--
Confidence            5789999999999999987764 42      4799999999998 99999998876     3 348899999876321  


Q ss_pred             hhhcCCCCCeeEEEEcCCCCC
Q 022298          223 EQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       223 ~~~~~~~~~fDlI~iDPPY~~  243 (299)
                           ..+.||+|+++.+...
T Consensus       160 -----~~~~fD~I~~~~~~~~  175 (227)
T 1r18_A          160 -----PNAPYNAIHVGAAAPD  175 (227)
T ss_dssp             -----GGCSEEEEEECSCBSS
T ss_pred             -----cCCCccEEEECCchHH
Confidence                 1268999999998754

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.61  E-value=8.2e-08  Score=85.80  Aligned_cols=82  Identities=15%  Similarity=0.097  Sum_probs=64.5

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CC-CEEEEEeCCHH------HHHHHHHHHHHHhCCCCcEEEEEcc-hhhHHHHHhhh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPW------VVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAEQF  225 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga-~~V~~VD~n~~------Al~~~a~~N~~~~g~~~~~~vi~~D-~~~~l~~~~~~  225 (299)
                      .+.+|||+|||+|.+++.++.+ |. .+|+++|+++.      ++ +.+++|++..++.++++++.+| .....     +
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~  116 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL-GQAWNHLLAGPLGDRLTVHFNTNLSDDL-----G  116 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCH-HHHHHHHHTSTTGGGEEEECSCCTTTCC-----G
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHH-HHHHHHHHhcCCCCceEEEECChhhhcc-----C
Confidence            5789999999999999998887 43 58999999997      87 8999999988876678999988 32110     0


Q ss_pred             cCCCCCeeEEEEcCCCC
Q 022298          226 VGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~  242 (299)
                      ....++||+|++...+.
T Consensus       117 ~~~~~~fD~v~~~~~l~  133 (275)
T 3bkx_A          117 PIADQHFDRVVLAHSLW  133 (275)
T ss_dssp             GGTTCCCSEEEEESCGG
T ss_pred             CCCCCCEEEEEEccchh
Confidence            11246899999988764

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.60  E-value=2.1e-07  Score=81.24  Aligned_cols=72  Identities=15%  Similarity=0.115  Sum_probs=60.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+  .+|+++|+++.++ +.+++|+...+.  +++++++|+.+..        ..++||+
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~~~fD~   99 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEML-EIAQEKAMETNR--HVDFWVQDMRELE--------LPEPVDA   99 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHH-HHHHHHHHHTTC--CCEEEECCGGGCC--------CSSCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHH-HHHHHhhhhcCC--ceEEEEcChhhcC--------CCCCcCE
Confidence            3689999999999999987776  5899999999998 999999987763  4788999987642        1368999


Q ss_pred             EEEcC
Q 022298          235 MSVTP  239 (299)
Q Consensus       235 I~iDP  239 (299)
                      |++..
T Consensus       100 v~~~~  104 (243)
T 3d2l_A          100 ITILC  104 (243)
T ss_dssp             EEECT
T ss_pred             EEEeC
Confidence            99975

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.60  E-value=1.8e-07  Score=80.05  Aligned_cols=71  Identities=17%  Similarity=0.090  Sum_probs=58.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|+ +|+++|+++.++ +.+++    .+. .+++++++|+.++.        ..++||+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~-~~a~~----~~~-~~~~~~~~d~~~~~--------~~~~~D~  110 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMI-AEAGR----HGL-DNVEFRQQDLFDWT--------PDRQWDA  110 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHH-HHHGG----GCC-TTEEEEECCTTSCC--------CSSCEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHh----cCC-CCeEEEecccccCC--------CCCceeE
Confidence            467999999999999999888876 799999999998 88877    444 34899999987652        2478999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |++.--
T Consensus       111 v~~~~~  116 (218)
T 3ou2_A          111 VFFAHW  116 (218)
T ss_dssp             EEEESC
T ss_pred             EEEech
Confidence            998753

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.60  E-value=1.2e-07  Score=85.50  Aligned_cols=103  Identities=13%  Similarity=-0.066  Sum_probs=75.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      ..|.-+++..++++-+....    ..+|.+|||+|||+|.+...++.. | ..+|++||++++++ +.+++|++..+   
T Consensus        55 w~p~rsklaa~i~~gl~~l~----ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~-~~l~~~a~~~~---  126 (233)
T 4df3_A           55 WNAYRSKLAAALLKGLIELP----VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVM-RDLLTVVRDRR---  126 (233)
T ss_dssp             CCTTTCHHHHHHHTTCSCCC----CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHH-HHHHHHSTTCT---
T ss_pred             ECCCchHHHHHHHhchhhcC----CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHhhHhhc---
Confidence            45666677777776654321    136899999999999999987654 4 35899999999998 88888876542   


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++..+.+|+......    ......+|+||+|.++..
T Consensus       127 ni~~V~~d~~~p~~~----~~~~~~vDvVf~d~~~~~  159 (233)
T 4df3_A          127 NIFPILGDARFPEKY----RHLVEGVDGLYADVAQPE  159 (233)
T ss_dssp             TEEEEESCTTCGGGG----TTTCCCEEEEEECCCCTT
T ss_pred             CeeEEEEeccCcccc----ccccceEEEEEEeccCCh
Confidence            477888887654321    123468999999998874

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.58  E-value=2e-07  Score=78.01  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=58.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|. +++++|+++.++ +.+++|..      +++++++|+.+..       ...+.||+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~-~~a~~~~~------~~~~~~~d~~~~~-------~~~~~~D~  110 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILI-DYAKQDFP------EARWVVGDLSVDQ-------ISETDFDL  110 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHCT------TSEEEECCTTTSC-------CCCCCEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHH-HHHHHhCC------CCcEEEcccccCC-------CCCCceeE
Confidence            578999999999999999888876 799999999998 89888752      2678889987631       12468999


Q ss_pred             EEEcCCC
Q 022298          235 MSVTPPY  241 (299)
Q Consensus       235 I~iDPPY  241 (299)
                      |+++|+.
T Consensus       111 i~~~~~~  117 (195)
T 3cgg_A          111 IVSAGNV  117 (195)
T ss_dssp             EEECCCC
T ss_pred             EEECCcH
Confidence            9999764

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.57  E-value=2.3e-07  Score=79.28  Aligned_cols=75  Identities=12%  Similarity=0.032  Sum_probs=58.7

Q ss_pred             CCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+.+.++. .|+ +|+++|+|+.++ +.++++++..+.  +++++++|+.+..       ...++||
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~-------~~~~~fD   91 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQL-KKAENFSRENNF--KLNISKGDIRKLP-------FKDESMS   91 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHH-HHHHHHHHHHTC--CCCEEECCTTSCC-------SCTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHH-HHHHHHHHhcCC--ceEEEECchhhCC-------CCCCcee
Confidence            478999999999998655544 454 799999999998 999999987763  3678899987531       1246899


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|++.-.
T Consensus        92 ~v~~~~~   98 (209)
T 2p8j_A           92 FVYSYGT   98 (209)
T ss_dssp             EEEECSC
T ss_pred             EEEEcCh
Confidence            9998644

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.57  E-value=1.3e-07  Score=82.90  Aligned_cols=78  Identities=12%  Similarity=-0.049  Sum_probs=57.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||||.++..++.+ |..+|++||+++.++ +.+.++++..   +++.++.+|+.......    ...+.||
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l-~~~~~~a~~~---~~v~~~~~d~~~~~~~~----~~~~~fD  128 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF-EKLLELVRER---NNIIPLLFDASKPWKYS----GIVEKVD  128 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH-HHHHHHHHHC---SSEEEECSCTTCGGGTT----TTCCCEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHhcC---CCeEEEEcCCCCchhhc----cccccee
Confidence            5789999999999999887765 335899999999987 7666666543   24777888876531100    1136899


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|++|.+
T Consensus       129 ~V~~~~~  135 (210)
T 1nt2_A          129 LIYQDIA  135 (210)
T ss_dssp             EEEECCC
T ss_pred             EEEEecc
Confidence            9999954

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.56  E-value=7.9e-08  Score=90.55  Aligned_cols=74  Identities=22%  Similarity=0.214  Sum_probs=60.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+++|||||+|.+++++.+.|+..|.++|+|+.|+ +..+.|.....        ++|+.++....      -..+|+
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~-~t~~~N~~~~~--------~~Di~~~~~~~------~~~~D~   74 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQ-EVYEMNFGEKP--------EGDITQVNEKT------IPDHDI   74 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHH-HHHHHHHSCCC--------BSCGGGSCGGG------SCCCSE
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHH-HHHHHHcCCCC--------cCCHHHcCHhh------CCCCCE
Confidence            4679999999999999999999999999999999997 99999973221        57887764221      246999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |+.+||+..
T Consensus        75 l~~gpPCQ~   83 (327)
T 2c7p_A           75 LCAGFPCQA   83 (327)
T ss_dssp             EEEECCCTT
T ss_pred             EEECCCCCC
Confidence            999999974

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.56  E-value=2.2e-07  Score=88.80  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=68.7

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCC-----CcEEEEEcchhhHHHHHhhhcC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFL-----DVSSIHTVRVETFLERAEQFVG  227 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~-----~~~~vi~~D~~~~l~~~~~~~~  227 (299)
                      .+|.+|||+|||.|+=++.++..+. ..++++|+++..+ +.+++|++.++..     +++.+...|+..+....     
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~-~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~-----  220 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRI-ARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE-----  220 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHH-HHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS-----
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHH-HHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc-----
Confidence            3688999999999999888777654 3699999999998 9999999998763     35788889988765432     


Q ss_pred             CCCCeeEEEEcCCCCC
Q 022298          228 KDGPFDYMSVTPPYTA  243 (299)
Q Consensus       228 ~~~~fDlI~iDPPY~~  243 (299)
                       .+.||.|++|+|...
T Consensus       221 -~~~fD~VLlDaPCSg  235 (359)
T 4fzv_A          221 -GDTYDRVLVDVPCTT  235 (359)
T ss_dssp             -TTCEEEEEEECCCCC
T ss_pred             -cccCCEEEECCccCC
Confidence             468999999999875

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.55  E-value=2e-07  Score=82.32  Aligned_cols=76  Identities=16%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+|+ +|+++|+++.++ +.+++|+ ..+ ..+++++.+|+.++.       ...+.||+
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~-~~~-~~~~~~~~~d~~~~~-------~~~~~fD~  107 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIARGY-RYIALDADAAML-EVFRQKI-AGV-DRKVQVVQADARAIP-------LPDESVHG  107 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHH-HHHHHHT-TTS-CTTEEEEESCTTSCC-------SCTTCEEE
T ss_pred             CCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHh-hcc-CCceEEEEcccccCC-------CCCCCeeE
Confidence            578999999999999999888875 799999999998 9999987 222 345889999987542       12468999


Q ss_pred             EEEcCCC
Q 022298          235 MSVTPPY  241 (299)
Q Consensus       235 I~iDPPY  241 (299)
                      |++.-.+
T Consensus       108 v~~~~~l  114 (263)
T 2yqz_A          108 VIVVHLW  114 (263)
T ss_dssp             EEEESCG
T ss_pred             EEECCch
Confidence            9987543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.55  E-value=2.2e-07  Score=82.72  Aligned_cols=69  Identities=14%  Similarity=0.089  Sum_probs=57.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|. +|+++|+++.++ +.++++..      +++++++|+.++.        ..+.||+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~------~~~~~~~d~~~~~--------~~~~fD~  113 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADML-AIARRRNP------DAVLHHGDMRDFS--------LGRRFSA  113 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHH-HHHHHHCT------TSEEEECCTTTCC--------CSCCEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHhhCC------CCEEEECChHHCC--------ccCCcCE
Confidence            468999999999999998888876 799999999998 89888743      3678999987642        1478999


Q ss_pred             EEEcC
Q 022298          235 MSVTP  239 (299)
Q Consensus       235 I~iDP  239 (299)
                      |++..
T Consensus       114 v~~~~  118 (263)
T 3pfg_A          114 VTCMF  118 (263)
T ss_dssp             EEECT
T ss_pred             EEEcC
Confidence            99976

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.55  E-value=1.2e-07  Score=81.70  Aligned_cols=73  Identities=19%  Similarity=0.115  Sum_probs=59.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|+ +|+++|+++.++ +.+++++.     .+++++++|+.++.       .. ++||+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~-----~~~~~~~~d~~~~~-------~~-~~fD~  109 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMR-MIAKEKLP-----KEFSITEGDFLSFE-------VP-TSIDT  109 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHH-HHHHHHSC-----TTCCEESCCSSSCC-------CC-SCCSE
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHH-HHHHHhCC-----CceEEEeCChhhcC-------CC-CCeEE
Confidence            578999999999999999888876 799999999998 88888764     34678888887642       12 68999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |+++-...
T Consensus       110 v~~~~~l~  117 (220)
T 3hnr_A          110 IVSTYAFH  117 (220)
T ss_dssp             EEEESCGG
T ss_pred             EEECcchh
Confidence            99875443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.54  E-value=2.4e-07  Score=79.09  Aligned_cols=71  Identities=17%  Similarity=0.106  Sum_probs=58.3

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM  235 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI  235 (299)
                      +.+|||+|||+|.++..++.+|+ +|+++|+++.++ +.+++|.      .+++++++|+.++.       ...++||+|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~------~~~~~~~~d~~~~~-------~~~~~fD~v  106 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLV-ELARQTH------PSVTFHHGTITDLS-------DSPKRWAGL  106 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHH-HHHHHHC------TTSEEECCCGGGGG-------GSCCCEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHhC------CCCeEEeCcccccc-------cCCCCeEEE
Confidence            67999999999999999888887 699999999998 8888872      24788999987742       124789999


Q ss_pred             EEcCCC
Q 022298          236 SVTPPY  241 (299)
Q Consensus       236 ~iDPPY  241 (299)
                      ++.-..
T Consensus       107 ~~~~~l  112 (203)
T 3h2b_A          107 LAWYSL  112 (203)
T ss_dssp             EEESSS
T ss_pred             EehhhH
Confidence            996543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.54  E-value=2.4e-07  Score=75.79  Aligned_cols=75  Identities=9%  Similarity=-0.020  Sum_probs=55.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~~~~~~~~~  230 (299)
                      .+.+|||+|||+|.++..++.+ |. .+++++|+++ ++ +.           .+++++++|+.+...  ..... ...+
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~-~~-----------~~~~~~~~d~~~~~~~~~~~~~-~~~~   87 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD-PI-----------VGVDFLQGDFRDELVMKALLER-VGDS   87 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC-CC-----------TTEEEEESCTTSHHHHHHHHHH-HTTC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc-cc-----------CcEEEEEcccccchhhhhhhcc-CCCC
Confidence            5779999999999999998877 53 6899999999 65 32           347889999876521  00000 1246


Q ss_pred             CeeEEEEcCCCCC
Q 022298          231 PFDYMSVTPPYTA  243 (299)
Q Consensus       231 ~fDlI~iDPPY~~  243 (299)
                      +||+|++|+|+..
T Consensus        88 ~~D~i~~~~~~~~  100 (180)
T 1ej0_A           88 KVQVVMSDMAPNM  100 (180)
T ss_dssp             CEEEEEECCCCCC
T ss_pred             ceeEEEECCCccc
Confidence            8999999999764

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.54  E-value=1.2e-07  Score=85.78  Aligned_cols=78  Identities=15%  Similarity=0.029  Sum_probs=59.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH----------hC------CCCcEEEEEcchhhH
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW----------TG------FLDVSSIHTVRVETF  218 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~----------~g------~~~~~~vi~~D~~~~  218 (299)
                      .+.+|||+|||+|..++.++.+|. +|++||+++.++ +.++++...          .+      ...+++++++|+.++
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGI-REFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHH-HHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHH-HHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            578999999999999999989998 799999999998 888765421          00      123589999999875


Q ss_pred             HHHHhhhcCCCCCeeEEEEcCC
Q 022298          219 LERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       219 l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      ..      ...++||+|+..--
T Consensus       146 ~~------~~~~~FD~V~~~~~  161 (252)
T 2gb4_A          146 PR------ANIGKFDRIWDRGA  161 (252)
T ss_dssp             GG------GCCCCEEEEEESSS
T ss_pred             Cc------ccCCCEEEEEEhhh
Confidence            31      11268999996543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.52  E-value=9.6e-08  Score=85.52  Aligned_cols=90  Identities=17%  Similarity=0.053  Sum_probs=68.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      .++....+.+.+.+.+..       ..+.+|||+|||+|.+++.++..|+ +|+++|+++.++ +.++++.       ++
T Consensus        15 ~~~~~~~~~~~l~~~~~~-------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~-------~~   78 (261)
T 3ege_A           15 TRVPDIRIVNAIINLLNL-------PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMR-QQAVVHP-------QV   78 (261)
T ss_dssp             SBCCCHHHHHHHHHHHCC-------CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHH-HSSCCCT-------TE
T ss_pred             cccccHHHHHHHHHHhCC-------CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHH-HHHHhcc-------CC
Confidence            355555677777777643       2578999999999999999888775 799999999987 7666554       47


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                      +++++|+.++.       ...++||+|++.-..
T Consensus        79 ~~~~~d~~~~~-------~~~~~fD~v~~~~~l  104 (261)
T 3ege_A           79 EWFTGYAENLA-------LPDKSVDGVISILAI  104 (261)
T ss_dssp             EEECCCTTSCC-------SCTTCBSEEEEESCG
T ss_pred             EEEECchhhCC-------CCCCCEeEEEEcchH
Confidence            88999987632       124689999987654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.52  E-value=6.9e-08  Score=91.34  Aligned_cols=75  Identities=21%  Similarity=0.294  Sum_probs=58.3

Q ss_pred             CEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          157 GRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+|+|||||+|.+++.+.+.|  +..|+++|+|+.|+ +..+.|...      ..++++|+.++....  +.  ...+|+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~-~~~~~N~~~------~~~~~~Di~~~~~~~--~~--~~~~D~   71 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVAN-EVYKYNFPH------TQLLAKTIEGITLEE--FD--RLSFDM   71 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHCTT------SCEECSCGGGCCHHH--HH--HHCCSE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHH-HHHHHhccc------cccccCCHHHccHhH--cC--cCCcCE
Confidence            589999999999999999999  56899999999998 999999632      236778988765321  10  126999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |+.+||+.
T Consensus        72 l~~gpPCq   79 (343)
T 1g55_A           72 ILMSPPCQ   79 (343)
T ss_dssp             EEECCC--
T ss_pred             EEEcCCCc
Confidence            99999964

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.51  E-value=2.8e-07  Score=79.25  Aligned_cols=71  Identities=15%  Similarity=0.183  Sum_probs=58.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|+ +|+++|+++.++ +.+++|.   +    +.++.+|+....        ..+.||+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~---~----~~~~~~d~~~~~--------~~~~fD~  105 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELA-AEASRRL---G----RPVRTMLFHQLD--------AIDAYDA  105 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHH---T----SCCEECCGGGCC--------CCSCEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHH-HHHHHhc---C----CceEEeeeccCC--------CCCcEEE
Confidence            478999999999999999888876 799999999998 8999887   2    346778877642        2578999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++.....
T Consensus       106 v~~~~~l~  113 (211)
T 3e23_A          106 VWAHACLL  113 (211)
T ss_dssp             EEECSCGG
T ss_pred             EEecCchh
Confidence            99987554

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.51  E-value=3.2e-07  Score=80.13  Aligned_cols=75  Identities=11%  Similarity=0.022  Sum_probs=60.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|+ +|+++|+++.++ +.++++.   . ..+++++++|+.+..       ...++||+
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~---~-~~~~~~~~~d~~~~~-------~~~~~fD~  119 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMI-QKGKERG---E-GPDLSFIKGDLSSLP-------FENEQFEA  119 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHTTT---C-BTTEEEEECBTTBCS-------SCTTCEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHhhc---c-cCCceEEEcchhcCC-------CCCCCccE
Confidence            478999999999999999988877 799999999998 8888874   2 245889999987642       12478999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++.-...
T Consensus       120 v~~~~~l~  127 (242)
T 3l8d_A          120 IMAINSLE  127 (242)
T ss_dssp             EEEESCTT
T ss_pred             EEEcChHh
Confidence            99876554

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.51  E-value=2.3e-07  Score=84.18  Aligned_cols=77  Identities=10%  Similarity=0.057  Sum_probs=63.1

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|.+++.++.+ + ..+|+++|+++.++ +.+++|+...+.  +++++++|+.++.        ..++|
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~--~v~~~~~d~~~~~--------~~~~f   90 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL-AEARELFRLLPY--DSEFLEGDATEIE--------LNDKY   90 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHH-HHHHHHHHSSSS--EEEEEESCTTTCC--------CSSCE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEcchhhcC--------cCCCe
Confidence            5789999999999999988776 2 35799999999998 999999987765  5889999988642        13689


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+|++.-...
T Consensus        91 D~v~~~~~l~  100 (284)
T 3gu3_A           91 DIAICHAFLL  100 (284)
T ss_dssp             EEEEEESCGG
T ss_pred             eEEEECChhh
Confidence            9999977533

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.50  E-value=5e-08  Score=88.99  Aligned_cols=74  Identities=8%  Similarity=-0.004  Sum_probs=61.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~--g~-~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .+.+|||+|||+|.++.+++..+ .+|++||+|+.++ +.+++|+...  ++ ..+++++.+|+.+++          ++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i-~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------~~  139 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKIL-DSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------KK  139 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHH-GGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------CC
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHH-HHHHHHHHhhccccCCCeEEEEechHHHHH----------hh
Confidence            46799999999999999998887 8999999999998 9999886432  22 246899999987753          57


Q ss_pred             eeEEEEcCC
Q 022298          232 FDYMSVTPP  240 (299)
Q Consensus       232 fDlI~iDPP  240 (299)
                      ||+|++|.+
T Consensus       140 fD~Ii~d~~  148 (262)
T 2cmg_A          140 YDLIFCLQE  148 (262)
T ss_dssp             EEEEEESSC
T ss_pred             CCEEEECCC
Confidence            999999974

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.50  E-value=5.5e-07  Score=94.22  Aligned_cols=94  Identities=12%  Similarity=0.080  Sum_probs=71.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHh-----
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWT-----  202 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~-----  202 (299)
                      .|......+.+.+.+..       ..+.+|||+|||+|.+++.++.+|.  .+|++||+++.++ +.++++++..     
T Consensus       703 PPL~eqRle~LLelL~~-------~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emL-e~AReRLa~~lnAkr  774 (950)
T 3htx_A          703 PPLSKQRVEYALKHIRE-------SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGL-ARAAKMLHVKLNKEA  774 (950)
T ss_dssp             SCHHHHHHHHHHHHHHH-------SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHH-HHHHHHHHHHTTTTC
T ss_pred             chHHHHHHHHHHHHhcc-------cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHHhhhccchhh
Confidence            34444555667777765       3578999999999999998888773  5899999999998 9999977643     


Q ss_pred             -CCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          203 -GFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       203 -g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                       +. .+++++++|+.++.       ...+.||+|++.-
T Consensus       775 ~gl-~nVefiqGDa~dLp-------~~d~sFDlVV~~e  804 (950)
T 3htx_A          775 CNV-KSATLYDGSILEFD-------SRLHDVDIGTCLE  804 (950)
T ss_dssp             SSC-SEEEEEESCTTSCC-------TTSCSCCEEEEES
T ss_pred             cCC-CceEEEECchHhCC-------cccCCeeEEEEeC
Confidence             33 35899999987642       1246899998743

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.49  E-value=5.7e-07  Score=82.54  Aligned_cols=85  Identities=16%  Similarity=0.054  Sum_probs=62.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC------CCCcEEEEEcchhhHHHHHhhhcCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG------FLDVSSIHTVRVETFLERAEQFVGK  228 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g------~~~~~~vi~~D~~~~l~~~~~~~~~  228 (299)
                      .+.+|||+|||+|.++..++.++..+++++|+++.++ +.++++....+      ...+++++++|+.+.... ..+...
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~  111 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSV-KQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI-DKFRDP  111 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCST-TTCSST
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHH-HHHHHHHHHhhhcccccccceEEEEEecccccchh-hhcccC
Confidence            4679999999999999988877777899999999998 99999987652      223588999998764200 001111


Q ss_pred             CCCeeEEEEcCCC
Q 022298          229 DGPFDYMSVTPPY  241 (299)
Q Consensus       229 ~~~fDlI~iDPPY  241 (299)
                      .++||+|++.-..
T Consensus       112 ~~~fD~V~~~~~l  124 (313)
T 3bgv_A          112 QMCFDICSCQFVC  124 (313)
T ss_dssp             TCCEEEEEEETCG
T ss_pred             CCCEEEEEEecch
Confidence            3489999986543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.48  E-value=1.5e-07  Score=78.11  Aligned_cols=71  Identities=11%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||+|.++..++.++. +|+++|+++.++ +.++++     . ++++++.+| ..+         ..+.||+
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~-----~-~~v~~~~~d-~~~---------~~~~~D~   78 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIAL-KEVKEK-----F-DSVITLSDP-KEI---------PDNSVDF   78 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHH-HHHHHH-----C-TTSEEESSG-GGS---------CTTCEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHH-HHHHHh-----C-CCcEEEeCC-CCC---------CCCceEE
Confidence            567999999999999999888876 899999999998 888888     2 347788888 221         2468999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++.-.+..
T Consensus        79 v~~~~~l~~   87 (170)
T 3i9f_A           79 ILFANSFHD   87 (170)
T ss_dssp             EEEESCSTT
T ss_pred             EEEccchhc
Confidence            999877654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.48  E-value=6.7e-07  Score=80.43  Aligned_cols=101  Identities=14%  Similarity=-0.004  Sum_probs=67.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      .|-..++...+.+.+....    ..++.+|||+|||||.++..++.. | ..+|+++|+++.++ +.+.+..+..   .+
T Consensus        55 ~~~~skla~~ll~~l~~~~----l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l-~~l~~~a~~r---~n  126 (232)
T 3id6_C           55 NAFRSKLAGAILKGLKTNP----IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVV-RELLLVAQRR---PN  126 (232)
T ss_dssp             CTTTCHHHHHHHTTCSCCS----CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHH-HHHHHHHHHC---TT
T ss_pred             chHHHHHHHHHHhhhhhcC----CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc---CC
Confidence            3444455566655554211    135889999999999999887654 3 44899999999986 5555544432   24


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      +.++.+|+......    ....++||+||+|-+..
T Consensus       127 v~~i~~Da~~~~~~----~~~~~~~D~I~~d~a~~  157 (232)
T 3id6_C          127 IFPLLADARFPQSY----KSVVENVDVLYVDIAQP  157 (232)
T ss_dssp             EEEEECCTTCGGGT----TTTCCCEEEEEECCCCT
T ss_pred             eEEEEcccccchhh----hccccceEEEEecCCCh
Confidence            88899998753210    01136899999998763

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.46  E-value=2.1e-07  Score=84.54  Aligned_cols=88  Identities=17%  Similarity=0.095  Sum_probs=63.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      .||+-.   +.++++|....     -...+|||+|||+|.++..++.+|. +|++||+|+.++ +.++++       .++
T Consensus        21 ~Rp~yp---~~l~~~l~~~~-----~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml-~~a~~~-------~~v   83 (257)
T 4hg2_A           21 FRPRYP---RALFRWLGEVA-----PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQI-RQALRH-------PRV   83 (257)
T ss_dssp             CCCCCC---HHHHHHHHHHS-----SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHH-HTCCCC-------TTE
T ss_pred             HCCCcH---HHHHHHHHHhc-----CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhh-hhhhhc-------CCc
Confidence            476532   24555555431     1357999999999999998888875 799999999987 655432       348


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      +++++|+++.-       -..+.||+|++.=-
T Consensus        84 ~~~~~~~e~~~-------~~~~sfD~v~~~~~  108 (257)
T 4hg2_A           84 TYAVAPAEDTG-------LPPASVDVAIAAQA  108 (257)
T ss_dssp             EEEECCTTCCC-------CCSSCEEEEEECSC
T ss_pred             eeehhhhhhhc-------ccCCcccEEEEeee
Confidence            89999987642       23578999998543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.46  E-value=3e-07  Score=93.77  Aligned_cols=75  Identities=13%  Similarity=0.135  Sum_probs=61.6

Q ss_pred             CCCEEEEECCccchHHHH---HHHcCCC--EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298          155 RPGRWLDLYSGTGSVGIE---AISRGCS--EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIE---AlSrGa~--~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      ....|||+|||+|.++..   |..+++.  +|++||.|+.|  ..++++++.+++.++++++++|++++.        ..
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A--~~a~~~v~~N~~~dkVtVI~gd~eev~--------LP  426 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA--VVTLENWQFEEWGSQVTVVSSDMREWV--------AP  426 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH--HHHHHHHHHHTTGGGEEEEESCTTTCC--------CS
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH--HHHHHHHHhccCCCeEEEEeCcceecc--------CC
Confidence            456899999999999544   4455544  68999999976  479999999999999999999999862        24


Q ss_pred             CCeeEEEEcC
Q 022298          230 GPFDYMSVTP  239 (299)
Q Consensus       230 ~~fDlI~iDP  239 (299)
                      +++|+|+...
T Consensus       427 EKVDIIVSEw  436 (637)
T 4gqb_A          427 EKADIIVSEL  436 (637)
T ss_dssp             SCEEEEECCC
T ss_pred             cccCEEEEEc
Confidence            7899999876

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.46  E-value=3.7e-07  Score=79.02  Aligned_cols=78  Identities=14%  Similarity=0.074  Sum_probs=57.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHH----HHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVL----IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a----~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      .+.+|||+|||+|.+++.++.++ ..+|++||+++.++ +.+    +++.+..+.. +++++++|+.++.       ...
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l-~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~-------~~~   97 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRM-EKISAKAAAKPAKGGLP-NLLYLWATAERLP-------PLS   97 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGG-HHHHHHHTSCGGGTCCT-TEEEEECCSTTCC-------SCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhhhhcCCC-ceEEEecchhhCC-------CCC
Confidence            57899999999999999988874 45799999999976 543    3344445554 4899999987632       112


Q ss_pred             CCeeEEEEcCCCC
Q 022298          230 GPFDYMSVTPPYT  242 (299)
Q Consensus       230 ~~fDlI~iDPPY~  242 (299)
                      +. |.|++..|+.
T Consensus        98 ~~-d~v~~~~~~~  109 (218)
T 3mq2_A           98 GV-GELHVLMPWG  109 (218)
T ss_dssp             CE-EEEEEESCCH
T ss_pred             CC-CEEEEEccch
Confidence            34 8888777654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.46  E-value=6.7e-07  Score=85.05  Aligned_cols=87  Identities=18%  Similarity=0.021  Sum_probs=65.5

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHh-----C-CC-CcEEEEEcchhhHHHHHhhh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWT-----G-FL-DVSSIHTVRVETFLERAEQF  225 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~-----g-~~-~~~~vi~~D~~~~l~~~~~~  225 (299)
                      ++.+|||+|||+|.+++.++.+  ...+|+++|+++.++ +.+++|++.+     | .. .+++++++|+.+..... ..
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~-~~  160 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQL-EVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE-PE  160 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHH-HHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB-SC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc-cC
Confidence            5789999999999999988765  234899999999998 9999999876     4 32 45899999988642100 00


Q ss_pred             cCCCCCeeEEEEcCCCCC
Q 022298          226 VGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~~  243 (299)
                      ....++||+|+++..+..
T Consensus       161 ~~~~~~fD~V~~~~~l~~  178 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNL  178 (383)
T ss_dssp             CCCTTCEEEEEEESCGGG
T ss_pred             CCCCCCEEEEEEccchhc
Confidence            112468999999887653

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.45  E-value=3.6e-07  Score=87.61  Aligned_cols=79  Identities=25%  Similarity=0.292  Sum_probs=61.2

Q ss_pred             CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHh-hhcCCCCCeeEE
Q 022298          157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE-QFVGKDGPFDYM  235 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~-~~~~~~~~fDlI  235 (299)
                      -+++|||||+|.+++.+.+.|...|.++|+|+.|+ +..+.|..     + ..++++|+.++..... ........+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~-~t~~~N~~-----~-~~~~~~DI~~~~~~~~~~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAI-NTHAINFP-----R-SLHVQEDVSLLNAEIIKGFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHH-HHHHHHCT-----T-SEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHH-HHHHHhCC-----C-CceEecChhhcCHHHHHhhcccCCCeeEE
Confidence            47999999999999999899998899999999997 99998852     2 4577889887643210 001123579999


Q ss_pred             EEcCCCC
Q 022298          236 SVTPPYT  242 (299)
Q Consensus       236 ~iDPPY~  242 (299)
                      +.+||+.
T Consensus        76 ~ggpPCQ   82 (376)
T 3g7u_A           76 IGGPPCQ   82 (376)
T ss_dssp             EECCCCC
T ss_pred             EecCCCC
Confidence            9999965

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.43  E-value=2e-07  Score=82.59  Aligned_cols=80  Identities=13%  Similarity=0.027  Sum_probs=61.1

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCC-HHHHHHHH---HHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMD-PWVVSNVL---IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n-~~Al~~~a---~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      .+.+|||+|||+|.+++.++.+ ...+|++||++ +..+ +.+   ++|++..++.+ ++++++|+.++...      ..
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml-~~A~~A~~~~~~~~~~~-v~~~~~d~~~l~~~------~~   95 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLF-DISKKIIKKPSKGGLSN-VVFVIAAAESLPFE------LK   95 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGH-HHHHHHTSCGGGTCCSS-EEEECCBTTBCCGG------GT
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHH-HHHHHHHHHHHHcCCCC-eEEEEcCHHHhhhh------cc
Confidence            5779999999999999987743 33479999999 6554 666   78887778754 88999998775211      12


Q ss_pred             CCeeEEEEcCCCC
Q 022298          230 GPFDYMSVTPPYT  242 (299)
Q Consensus       230 ~~fDlI~iDPPY~  242 (299)
                      ..+|.|++++|+.
T Consensus        96 d~v~~i~~~~~~~  108 (225)
T 3p2e_A           96 NIADSISILFPWG  108 (225)
T ss_dssp             TCEEEEEEESCCH
T ss_pred             CeEEEEEEeCCCc
Confidence            6789999998864

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.41  E-value=1.6e-07  Score=83.86  Aligned_cols=74  Identities=11%  Similarity=0.053  Sum_probs=56.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-----CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHhhhcC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-----GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-----Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~--l~~~~~~~~  227 (299)
                      .+.+|||+|||+|..++.++.+     ...+|++||+++.++ +.++ +   .  .++++++++|+.+.  +...     
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l-~~a~-~---~--~~~v~~~~gD~~~~~~l~~~-----  148 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC-QIPA-S---D--MENITLHQGDCSDLTTFEHL-----  148 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC-CCCG-G---G--CTTEEEEECCSSCSGGGGGG-----
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHH-HHHh-c---c--CCceEEEECcchhHHHHHhh-----
Confidence            3579999999999999987775     245799999999987 7776 2   2  34689999998764  2211     


Q ss_pred             CCCCeeEEEEcCC
Q 022298          228 KDGPFDYMSVTPP  240 (299)
Q Consensus       228 ~~~~fDlI~iDPP  240 (299)
                      ...+||+|++|-.
T Consensus       149 ~~~~fD~I~~d~~  161 (236)
T 2bm8_A          149 REMAHPLIFIDNA  161 (236)
T ss_dssp             SSSCSSEEEEESS
T ss_pred             ccCCCCEEEECCc
Confidence            1237999999986

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.41  E-value=4.7e-07  Score=79.83  Aligned_cols=72  Identities=13%  Similarity=0.074  Sum_probs=58.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+|||+|||+|.++..++.+  ++ +|+++|+++.++ +.++++     . .+++++.+|+.++.        ..+.|
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~v~~~D~s~~~~-~~a~~~-----~-~~~~~~~~d~~~~~--------~~~~f   96 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVN-VITGIDSDDDML-EKAADR-----L-PNTNFGKADLATWK--------PAQKA   96 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTT-SEEEEESCHHHH-HHHHHH-----S-TTSEEEECCTTTCC--------CSSCE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCC-EEEEEECCHHHH-HHHHHh-----C-CCcEEEECChhhcC--------ccCCc
Confidence            5689999999999999998877  55 699999999998 888887     1 24788999987642        24689


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+|++.....
T Consensus        97 D~v~~~~~l~  106 (259)
T 2p35_A           97 DLLYANAVFQ  106 (259)
T ss_dssp             EEEEEESCGG
T ss_pred             CEEEEeCchh
Confidence            9999977544

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.40  E-value=6.7e-07  Score=82.88  Aligned_cols=82  Identities=9%  Similarity=-0.092  Sum_probs=55.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC-----cEEEEEcchhhH--HHHHhhhcC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-----VSSIHTVRVETF--LERAEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~-----~~~vi~~D~~~~--l~~~~~~~~  227 (299)
                      .+.+|||+|||+|......+..|..+|+++|+++.++ +.+++.....+...     .+++.+.|+..-  ...+.. ..
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l-~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~-~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAI-ARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE-VF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT-TC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHH-HHHHHHHHhccccccccccccchhhhhcccchhhhhhhc-cc
Confidence            3689999999999766666666666899999999998 99999887665421     145667776210  011100 01


Q ss_pred             CCCCeeEEEEc
Q 022298          228 KDGPFDYMSVT  238 (299)
Q Consensus       228 ~~~~fDlI~iD  238 (299)
                      ..++||+|++-
T Consensus       126 ~~~~FD~V~~~  136 (302)
T 2vdw_A          126 YFGKFNIIDWQ  136 (302)
T ss_dssp             CSSCEEEEEEE
T ss_pred             cCCCeeEEEEC
Confidence            24689999863

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.40  E-value=1.1e-06  Score=76.26  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=55.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.++. +|+++|+++.++ +.++++.      .+++++++|+.++.        ..+.||+
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~-~~a~~~~------~~~~~~~~d~~~~~--------~~~~~D~  103 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDML-THARKRL------PDATLHQGDMRDFR--------LGRKFSA  103 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHH-HHHHHHC------TTCEEEECCTTTCC--------CSSCEEE
T ss_pred             CCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHH-HHHHHhC------CCCEEEECCHHHcc--------cCCCCcE
Confidence            478999999999999999888876 799999999998 8888874      23678899987642        1468999


Q ss_pred             EEE
Q 022298          235 MSV  237 (299)
Q Consensus       235 I~i  237 (299)
                      |++
T Consensus       104 v~~  106 (239)
T 3bxo_A          104 VVS  106 (239)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            994

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.39  E-value=7e-08  Score=86.86  Aligned_cols=48  Identities=15%  Similarity=0.119  Sum_probs=42.2

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~  202 (299)
                      ..+.+|||+|||+|.+.+.++..|+.+|+++|+++.++ +.++++++..
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l-~~a~~~~~~~  101 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNR-EELEKWLKKE  101 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHHTC
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHH-HHHHHHHhcC
Confidence            46789999999999988877788988899999999998 9999987653

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.39  E-value=5.6e-07  Score=79.12  Aligned_cols=81  Identities=7%  Similarity=-0.103  Sum_probs=61.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|. +|+++|+|+.++ +.+++|.   .. .+++++++|+.+...... + .....||+
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~-~~a~~~~---~~-~~~~~~~~d~~~~~~~~~-~-~~~~~~d~  127 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSAL-EIAAKEN---TA-ANISYRLLDGLVPEQAAQ-I-HSEIGDAN  127 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHH-HHHHHHS---CC-TTEEEEECCTTCHHHHHH-H-HHHHCSCE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHH-HHHHHhC---cc-cCceEEECcccccccccc-c-ccccCccE
Confidence            568999999999999999988887 699999999998 8998876   22 358899999877532210 0 00125899


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |+++--...
T Consensus       128 v~~~~~~~~  136 (245)
T 3ggd_A          128 IYMRTGFHH  136 (245)
T ss_dssp             EEEESSSTT
T ss_pred             EEEcchhhc
Confidence            998865443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.38  E-value=1.2e-06  Score=80.79  Aligned_cols=48  Identities=23%  Similarity=0.162  Sum_probs=43.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF  204 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~  204 (299)
                      ++..|||+|||||+++++|+..|. ++++||+++.++ +.+++|++...-
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~-~~a~~r~~~~~~  282 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYA-QLAKERFAREVP  282 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHST
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHHHhcc
Confidence            578999999999999999999986 799999999998 999999987643

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.37  E-value=8e-07  Score=79.99  Aligned_cols=72  Identities=19%  Similarity=0.158  Sum_probs=58.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++..|+ +|+++|+++.++ +.++++.      .+++++.+|+.++.        ..+.||+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~------~~~~~~~~d~~~~~--------~~~~fD~  120 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMI-EKARQNY------PHLHFDVADARNFR--------VDKPLDA  120 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHC------TTSCEEECCTTTCC--------CSSCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHH-HHHHhhC------CCCEEEECChhhCC--------cCCCcCE
Confidence            578999999999999998888765 799999999998 8888775      23668889987642        1368999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++.-...
T Consensus       121 v~~~~~l~  128 (279)
T 3ccf_A          121 VFSNAMLH  128 (279)
T ss_dssp             EEEESCGG
T ss_pred             EEEcchhh
Confidence            99876543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.37  E-value=6.8e-07  Score=77.25  Aligned_cols=75  Identities=5%  Similarity=-0.073  Sum_probs=52.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HHhhhcC--CCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RAEQFVG--KDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~~~~~~--~~~  230 (299)
                      ++.+|||||||+|.++..++.++ .+|++||+++.+.            . .+++++++|+.+...  .......  ..+
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~~~------------~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEMEE------------I-AGVRFIRCDIFKETIFDDIDRALREEGIE   90 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCCCC------------C-TTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEEeecCCHHHHHHHHcC-CcEEEEecccccc------------C-CCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence            57899999999999999888884 4799999998531            1 247889999865321  0000000  013


Q ss_pred             CeeEEEEcCCCCC
Q 022298          231 PFDYMSVTPPYTA  243 (299)
Q Consensus       231 ~fDlI~iDPPY~~  243 (299)
                      +||+|++|+|...
T Consensus        91 ~~D~Vlsd~~~~~  103 (191)
T 3dou_A           91 KVDDVVSDAMAKV  103 (191)
T ss_dssp             SEEEEEECCCCCC
T ss_pred             cceEEecCCCcCC
Confidence            8999999997654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.36  E-value=1.3e-06  Score=81.82  Aligned_cols=76  Identities=14%  Similarity=0.027  Sum_probs=63.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++.+. ..+++++|+ +.++ +.+++|+...++.++++++.+|+.+.+         ...||
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D  250 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEGDFFKPL---------PVTAD  250 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSCC---------SCCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHH-HHHHHHHHhcCCCCceEEEeCCCCCcC---------CCCCC
Confidence            46899999999999999988764 347999999 9998 999999999988778999999987532         13499


Q ss_pred             EEEEcCCC
Q 022298          234 YMSVTPPY  241 (299)
Q Consensus       234 lI~iDPPY  241 (299)
                      +|++.-..
T Consensus       251 ~v~~~~vl  258 (374)
T 1qzz_A          251 VVLLSFVL  258 (374)
T ss_dssp             EEEEESCG
T ss_pred             EEEEeccc
Confidence            99987654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.36  E-value=1.9e-07  Score=82.55  Aligned_cols=82  Identities=12%  Similarity=-0.031  Sum_probs=60.6

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC----------------------------C
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF----------------------------L  205 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~----------------------------~  205 (299)
                      ..+.+|||+|||+|.+++.++.+|..+|+++|+++.++ +.+++++...+.                            .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNL-WELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHH-HHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            45789999999999999988888876899999999998 999988765421                            0


Q ss_pred             CcE-EEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          206 DVS-SIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       206 ~~~-~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      +++ +++++|+.+.....   ....+.||+|++.-
T Consensus       134 ~~v~~~~~~d~~~~~~~~---~~~~~~fD~v~~~~  165 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLG---GVSLPPADCLLSTL  165 (265)
T ss_dssp             HHEEEEEECCTTSSSTTT---TCCCCCEEEEEEES
T ss_pred             hhheeEEEeeeccCCCCC---ccccCCccEEEEhh
Confidence            126 78899987642100   00126899999853

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.35  E-value=3.2e-07  Score=84.54  Aligned_cols=73  Identities=15%  Similarity=0.104  Sum_probs=59.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ...+|||||||+|-+++..+.. +..+++++|+|+.++ +.+++|+..+|..  .++...|...-.        ..+.||
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~l-e~a~~~l~~~g~~--~~~~v~D~~~~~--------p~~~~D  200 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLV-GFVDEALTRLNVP--HRTNVADLLEDR--------LDEPAD  200 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHH-HHHHHHHHHTTCC--EEEEECCTTTSC--------CCSCCS
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHH-HHHHHHHHhcCCC--ceEEEeeecccC--------CCCCcc
Confidence            3679999999999999987665 677999999999998 9999999999985  567777755321        246789


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      ++++.
T Consensus       201 vaL~l  205 (281)
T 3lcv_B          201 VTLLL  205 (281)
T ss_dssp             EEEET
T ss_pred             hHHHH
Confidence            88764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.35  E-value=8.1e-07  Score=80.39  Aligned_cols=61  Identities=18%  Similarity=0.059  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF  204 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~  204 (299)
                      ..+.+.+.....        .++..|||+|||||+.+++|+..|. +++++|+++.++ +.+++|++.+++
T Consensus       199 ~~l~~~~i~~~~--------~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~-~~~~~r~~~~~~  259 (260)
T 1g60_A          199 RDLIERIIRASS--------NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYV-NQANFVLNQLEI  259 (260)
T ss_dssp             HHHHHHHHHHHC--------CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHC---
T ss_pred             HHHHHHHHHHhC--------CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHHhccC
Confidence            445555555543        3578999999999999999999986 799999999998 999999987654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.34  E-value=6.7e-07  Score=76.68  Aligned_cols=71  Identities=14%  Similarity=-0.026  Sum_probs=56.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..+   |..+++++|+++.++ +.+++|.      .+++++++|+.+..       ...++||+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~-~~a~~~~------~~~~~~~~d~~~~~-------~~~~~fD~   98 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAML-AVGRRRA------PEATWVRAWGEALP-------FPGESFDV   98 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHH-HHHHHHC------TTSEEECCCTTSCC-------SCSSCEEE
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHH-HHHHHhC------CCcEEEEcccccCC-------CCCCcEEE
Confidence            5789999999999999866   665899999999998 8888876      23678888876531       12468999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++.-...
T Consensus        99 v~~~~~l~  106 (211)
T 2gs9_A           99 VLLFTTLE  106 (211)
T ss_dssp             EEEESCTT
T ss_pred             EEEcChhh
Confidence            99876543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.34  E-value=1.1e-06  Score=79.95  Aligned_cols=71  Identities=15%  Similarity=0.108  Sum_probs=57.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ...+|||+|||+|.+++...  ++.+++++|+|+.++ +.+++|+..++..  ..+..+|.....        ..+.||+
T Consensus       105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i-~~ar~~~~~~g~~--~~~~v~D~~~~~--------~~~~~Dv  171 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLG-DVITPFAREKDWD--FTFALQDVLCAP--------PAEAGDL  171 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHH-HHHHHHHHHTTCE--EEEEECCTTTSC--------CCCBCSE
T ss_pred             CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHH-HHHHHHHHhcCCC--ceEEEeecccCC--------CCCCcch
Confidence            47799999999999999765  777899999999998 9999999998853  667778865431        2468898


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++.
T Consensus       172 vLll  175 (253)
T 3frh_A          172 ALIF  175 (253)
T ss_dssp             EEEE
T ss_pred             HHHH
Confidence            8765

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.30  E-value=1.8e-06  Score=80.63  Aligned_cols=76  Identities=17%  Similarity=0.102  Sum_probs=63.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+++.++.++ ..+++++|+ +.++ +.+++|++..++.++++++.+|+.+.+         ...||
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D  251 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDFFEPL---------PRKAD  251 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCTTSCC---------SSCEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHH-HHHHHHHHhcCCCCceEEEeCCCCCCC---------CCCcc
Confidence            46799999999999999888764 347999999 8888 999999999988778999999987532         13499


Q ss_pred             EEEEcCCC
Q 022298          234 YMSVTPPY  241 (299)
Q Consensus       234 lI~iDPPY  241 (299)
                      +|++.-..
T Consensus       252 ~v~~~~vl  259 (360)
T 1tw3_A          252 AIILSFVL  259 (360)
T ss_dssp             EEEEESCG
T ss_pred             EEEEcccc
Confidence            99986654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.28  E-value=1.4e-06  Score=73.45  Aligned_cols=87  Identities=10%  Similarity=-0.010  Sum_probs=64.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccc-hHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG-SVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSG-algIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~  206 (299)
                      .-|....+-+.+...+....     ..+.+|||+|||+| -++..++. +|. .|+++|+|+.|+ +             
T Consensus        14 ~~~~~~~m~e~LaeYI~~~~-----~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av-~-------------   73 (153)
T 2k4m_A           14 LVPRGSHMWNDLAVYIIRCS-----GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHG-G-------------   73 (153)
T ss_dssp             CCCCCCHHHHHHHHHHHHHS-----CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSST-T-------------
T ss_pred             cccchhhHHHHHHHHHHhcC-----CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCcccc-c-------------
Confidence            34444455777878776541     24679999999999 59987776 887 599999999997 4             


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEE-EEcCCCCCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYM-SVTPPYTAV  244 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI-~iDPPY~~~  244 (299)
                         +++.|+++.....      -+.||+| -++||....
T Consensus        74 ---~v~dDiF~P~~~~------Y~~~DLIYsirPP~El~  103 (153)
T 2k4m_A           74 ---IVRDDITSPRMEI------YRGAALIYSIRPPAEIH  103 (153)
T ss_dssp             ---EECCCSSSCCHHH------HTTEEEEEEESCCTTTH
T ss_pred             ---eEEccCCCCcccc------cCCcCEEEEcCCCHHHH
Confidence               6778877644322      1489999 699999863

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.25  E-value=2.2e-06  Score=76.42  Aligned_cols=70  Identities=24%  Similarity=0.250  Sum_probs=55.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|+ +|+++|+++.++ +.++++..     +.  ++++|+.++.       ...+.||+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~-----~~--~~~~d~~~~~-------~~~~~fD~  117 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEML-EVAREKGV-----KN--VVEAKAEDLP-------FPSGAFEA  117 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHH-HHHHHHTC-----SC--EEECCTTSCC-------SCTTCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHH-HHHHhhcC-----CC--EEECcHHHCC-------CCCCCEEE
Confidence            478999999999999999888876 799999999998 88888753     11  6778876531       12468999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |++...
T Consensus       118 v~~~~~  123 (260)
T 2avn_A          118 VLALGD  123 (260)
T ss_dssp             EEECSS
T ss_pred             EEEcch
Confidence            998643

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.24  E-value=3.4e-06  Score=77.63  Aligned_cols=74  Identities=18%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.++..++.+ ...+++++|++ .++ +.+++|+...++.++++++.+|+.+..        ..+.||
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~D  234 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVL-EVAKENARIQGVASRYHTIAGSAFEVD--------YGNDYD  234 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHH-HHHHHHHHHHTCGGGEEEEESCTTTSC--------CCSCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHH-HHHHHHHHhcCCCcceEEEecccccCC--------CCCCCc
Confidence            4679999999999999988876 23479999999 888 999999999988778999999987531        123599


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      +|++.
T Consensus       235 ~v~~~  239 (335)
T 2r3s_A          235 LVLLP  239 (335)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99983

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.21  E-value=1e-06  Score=75.61  Aligned_cols=72  Identities=18%  Similarity=0.162  Sum_probs=55.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+| .+++++|+++.++ +.+++|..        +++.+|+.++..     ....++||+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~-~~~~~~~~--------~~~~~d~~~~~~-----~~~~~~fD~   96 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAA-EQAKEKLD--------HVVLGDIETMDM-----PYEEEQFDC   96 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHH-HHHHTTSS--------EEEESCTTTCCC-----CSCTTCEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHH-HHHHHhCC--------cEEEcchhhcCC-----CCCCCccCE
Confidence            57899999999999999988887 5899999999998 88877641        467888765311     112468999


Q ss_pred             EEEcCCC
Q 022298          235 MSVTPPY  241 (299)
Q Consensus       235 I~iDPPY  241 (299)
                      |++.-..
T Consensus        97 v~~~~~l  103 (230)
T 3cc8_A           97 VIFGDVL  103 (230)
T ss_dssp             EEEESCG
T ss_pred             EEECChh
Confidence            9986543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.19  E-value=2.9e-07  Score=82.30  Aligned_cols=45  Identities=18%  Similarity=0.121  Sum_probs=39.8

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL  199 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~  199 (299)
                      ..+.+|||+|||||.++..++.+|+.+|++||+++.++ +.+++|.
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml-~~a~~~~   80 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQL-AWKIRSD   80 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCC-CHHHHTC
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHH-HHHHHhC
Confidence            45789999999999999999999988999999999998 7777653

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.16  E-value=9.8e-06  Score=75.06  Aligned_cols=80  Identities=14%  Similarity=0.073  Sum_probs=63.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++..+||+.||.|..+.+.+.+++ +|+++|.|+.|+ +.+++ ++.    +++++++++..++...+..+  ..+++|.
T Consensus        22 ~gg~~VD~T~G~GGHS~~il~~~g-~VigiD~Dp~Ai-~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~--g~~~vDg   92 (285)
T 1wg8_A           22 PGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAV-ARAKG-LHL----PGLTVVQGNFRHLKRHLAAL--GVERVDG   92 (285)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHH-TCC----TTEEEEESCGGGHHHHHHHT--TCSCEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHCCC-EEEEEeCCHHHH-HHHHh-hcc----CCEEEEECCcchHHHHHHHc--CCCCcCE
Confidence            578999999999999999998854 799999999998 88877 533    47999999988764333211  1257999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++|++|..
T Consensus        93 IL~DLGvSS  101 (285)
T 1wg8_A           93 ILADLGVSS  101 (285)
T ss_dssp             EEEECSCCH
T ss_pred             EEeCCcccc
Confidence            999999875

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.16  E-value=7.8e-06  Score=76.54  Aligned_cols=76  Identities=12%  Similarity=0.074  Sum_probs=62.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.++..++.+. ..+++++|+ +.++ +.+++|++..++.++++++.+|+.+..         ...+|
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D  258 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYKES---------YPEAD  258 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGH-HHHHHHHHHTTCTTTEEEEECCTTTSC---------CCCCS
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHH-HHHHHHHHhcCCCCCEEEEeCccccCC---------CCCCC
Confidence            46799999999999999988763 347999999 9998 999999999888878999999987631         13349


Q ss_pred             EEEEcCCC
Q 022298          234 YMSVTPPY  241 (299)
Q Consensus       234 lI~iDPPY  241 (299)
                      +|++.-..
T Consensus       259 ~v~~~~vl  266 (359)
T 1x19_A          259 AVLFCRIL  266 (359)
T ss_dssp             EEEEESCG
T ss_pred             EEEEechh
Confidence            99886544

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.16  E-value=4.1e-06  Score=86.15  Aligned_cols=99  Identities=15%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH--c--C----------CCEEEEEeCCHHHHHHHHHHHHHH
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS--R--G----------CSEVHFVEMDPWVVSNVLIPNLEW  201 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS--r--G----------a~~V~~VD~n~~Al~~~a~~N~~~  201 (299)
                      -++|++..+.....  ....+..|||+|||+|.++..++.  .  |          +.+|++||.|+.|+ ..++.. ..
T Consensus       392 Y~~AI~~al~d~~~--~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~-~~l~~~-~~  467 (745)
T 3ua3_A          392 YGEAVVGALKDLGA--DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI-VTLKYM-NV  467 (745)
T ss_dssp             HHHHHHHHHHHHHT--TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH-HHHHHH-HH
T ss_pred             HHHHHHHHHHHhhc--ccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH-HHHHHH-Hh
Confidence            45566655543210  001246899999999999754332  1  2          33899999999886 444443 34


Q ss_pred             hCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298          202 TGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP  240 (299)
Q Consensus       202 ~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP  240 (299)
                      +++.++++++++|++++.--..  ....++.|+|+....
T Consensus       468 Ng~~d~VtVI~gd~eev~lp~~--~~~~ekVDIIVSElm  504 (745)
T 3ua3_A          468 RTWKRRVTIIESDMRSLPGIAK--DRGFEQPDIIVSELL  504 (745)
T ss_dssp             HTTTTCSEEEESCGGGHHHHHH--HTTCCCCSEEEECCC
T ss_pred             cCCCCeEEEEeCchhhcccccc--cCCCCcccEEEEecc
Confidence            8998999999999998842100  011368999998886

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.15  E-value=6.3e-06  Score=76.68  Aligned_cols=77  Identities=10%  Similarity=0.063  Sum_probs=62.7

Q ss_pred             CCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      +.+|||+|||+|.++..++.+. ..+++++|+ +.++ +.+++++...+..++++++.+|+.+....      ..+.||+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~D~  251 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTR-DAARKTIHAHDLGGRVEFFEKNLLDARNF------EGGAADV  251 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGH-HHHHHHHHHTTCGGGEEEEECCTTCGGGG------TTCCEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHH-HHHHHHHHhcCCCCceEEEeCCcccCccc------CCCCccE
Confidence            6899999999999999888763 357999999 7887 99999999988878899999998764210      1356999


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |++.--
T Consensus       252 v~~~~v  257 (352)
T 3mcz_A          252 VMLNDC  257 (352)
T ss_dssp             EEEESC
T ss_pred             EEEecc
Confidence            998443

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.15  E-value=3.9e-07  Score=84.74  Aligned_cols=43  Identities=14%  Similarity=0.066  Sum_probs=38.0

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~  197 (299)
                      ..+.+|||+|||||.++..++.+|+.+|++||+++.++ +...+
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL-~~a~r  126 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQL-VWKLR  126 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCS-CHHHH
T ss_pred             ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHH-HHHHH
Confidence            46789999999999999999999998999999999987 76433

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.14  E-value=1.1e-05  Score=71.84  Aligned_cols=72  Identities=8%  Similarity=-0.005  Sum_probs=55.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.++..++.+ +..+|+++|+++.++ +.++++.      .++.++.+|+.+..       ...+.||
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~------~~~~~~~~d~~~~~-------~~~~~fD  150 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-KAAAKRY------PQVTFCVASSHRLP-------FSDTSMD  150 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-HHHHHHC------TTSEEEECCTTSCS-------BCTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHhC------CCcEEEEcchhhCC-------CCCCcee
Confidence            4789999999999999988876 234799999999998 8887764      23578888876531       1246899


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|++...
T Consensus       151 ~v~~~~~  157 (269)
T 1p91_A          151 AIIRIYA  157 (269)
T ss_dssp             EEEEESC
T ss_pred             EEEEeCC
Confidence            9997544

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.14  E-value=4e-06  Score=79.02  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=61.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ...+|||+|||+|.++++++.+. ..+++++|+ +.++ +.+++|++..++.++++++.+|+++..     + ...+.||
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~p~~~D  250 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQL-EMMRKQTAGLSGSERIHGHGANLLDRD-----V-PFPTGFD  250 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHH-HHHHHHHTTCTTGGGEEEEECCCCSSS-----C-CCCCCCS
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHH-HHHHHHHHhcCcccceEEEEccccccC-----C-CCCCCcC
Confidence            46799999999999999888753 347999999 9898 999999988887778999999987530     0 0025799


Q ss_pred             EEEEcC
Q 022298          234 YMSVTP  239 (299)
Q Consensus       234 lI~iDP  239 (299)
                      +|++.-
T Consensus       251 ~v~~~~  256 (363)
T 3dp7_A          251 AVWMSQ  256 (363)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            999743

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.12  E-value=1.3e-05  Score=75.58  Aligned_cols=75  Identities=16%  Similarity=0.051  Sum_probs=62.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ...+|||+|||+|.+++.++.+. ..+++++|+ +.++ +.+++++...++.++++++.+|+.+..         ...||
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~---------p~~~D  270 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVA-EEARELLTGRGLADRCEILPGDFFETI---------PDGAD  270 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTTCC---------CSSCS
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHH-HHHHHhhhhcCcCCceEEeccCCCCCC---------CCCce
Confidence            46899999999999999888763 347999999 9998 999999999988888999999987321         13799


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|++.--
T Consensus       271 ~v~~~~v  277 (369)
T 3gwz_A          271 VYLIKHV  277 (369)
T ss_dssp             EEEEESC
T ss_pred             EEEhhhh
Confidence            9998543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.10  E-value=6.3e-06  Score=74.58  Aligned_cols=46  Identities=11%  Similarity=0.052  Sum_probs=36.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE  200 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~  200 (299)
                      ..+.+|||+|||+|...+.+...+..+|+++|+++.++ +.++++++
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l-~~a~~~~~  115 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR-QELGRWLQ  115 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH-HHHHHHHT
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHH-HHHHHHHh
Confidence            35789999999999966544444445899999999998 88888654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.09  E-value=9.1e-06  Score=75.16  Aligned_cols=72  Identities=10%  Similarity=0.001  Sum_probs=60.1

Q ss_pred             CCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ..+|||+|||+|.++..++.+ ...+++++|+ +.++ +.+++++...++.++++++.+|+.+..         ...||+
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------p~~~D~  238 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPA-SAAHRRFLDTGLSGRAQVVVGSFFDPL---------PAGAGG  238 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSCC---------CCSCSE
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHH-HHHHHhhhhcCcCcCeEEecCCCCCCC---------CCCCcE
Confidence            579999999999999988775 3447999999 9998 999999999888788999999986321         127999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++-
T Consensus       239 v~~~  242 (332)
T 3i53_A          239 YVLS  242 (332)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9974

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.08  E-value=4.2e-06  Score=71.09  Aligned_cols=75  Identities=9%  Similarity=-0.032  Sum_probs=51.7

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH------------
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL------------  219 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l------------  219 (299)
                      ++.+|||+|||+|.+++.++.+ +  ..+|+++|+++.+  .          . .+++++++|+.+..            
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--~----------~-~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--P----------I-PNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--C----------C-TTCEEEECCTTTTSSCCC--------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--C----------C-CCceEEEccccchhhhhhcccccccc
Confidence            4679999999999999998876 3  3589999999842  1          1 23677888876542            


Q ss_pred             -------HHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          220 -------ERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       220 -------~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                             ...... .....||+|++|++...
T Consensus        89 ~~~~~~~~~~~~~-~~~~~fD~v~~~~~~~~  118 (201)
T 2plw_A           89 MNNNSVDYKLKEI-LQDKKIDIILSDAAVPC  118 (201)
T ss_dssp             ---CHHHHHHHHH-HTTCCEEEEEECCCCCC
T ss_pred             ccchhhHHHHHhh-cCCCcccEEEeCCCcCC
Confidence                   000000 02368999999986543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.07  E-value=3.7e-06  Score=77.67  Aligned_cols=74  Identities=11%  Similarity=-0.001  Sum_probs=61.1

Q ss_pred             CEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298          157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM  235 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI  235 (299)
                      .+|||+|||+|.++..++.+. ..+++++|+ +.++ +.+++|+...++.++++++.+|+.+..         .+.||+|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D~v  237 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSL-GVARDNLSSLLAGERVSLVGGDMLQEV---------PSNGDIY  237 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCT-HHHHHHTHHHHHTTSEEEEESCTTTCC---------CSSCSEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHH-HHHHHHHhhcCCCCcEEEecCCCCCCC---------CCCCCEE
Confidence            899999999999999888762 347999999 9998 999999988877677999999987521         2579999


Q ss_pred             EEcCCC
Q 022298          236 SVTPPY  241 (299)
Q Consensus       236 ~iDPPY  241 (299)
                      ++.-..
T Consensus       238 ~~~~vl  243 (334)
T 2ip2_A          238 LLSRII  243 (334)
T ss_dssp             EEESCG
T ss_pred             EEchhc
Confidence            986543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=98.05  E-value=8.1e-06  Score=75.86  Aligned_cols=79  Identities=18%  Similarity=0.168  Sum_probs=61.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCE--EEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSE--VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~--V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ...+++|||||.|.+++.+.+.|...  |.++|+|+.|+ +..+.|..     + ..++.+|+.++....  +.. ...+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~-~ty~~N~~-----~-~~~~~~DI~~i~~~~--i~~-~~~~   84 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSI-TVGMVRHQ-----G-KIMYVGDVRSVTQKH--IQE-WGPF   84 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHH-HHHHHHTT-----T-CEEEECCGGGCCHHH--HHH-TCCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHH-HHHHHhCC-----C-CceeCCChHHccHHH--hcc-cCCc
Confidence            45689999999999999888889876  79999999997 88888842     2 356789988765321  110 1479


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+++..||+..
T Consensus        85 Dll~ggpPCQ~   95 (295)
T 2qrv_A           85 DLVIGGSPCND   95 (295)
T ss_dssp             SEEEECCCCGG
T ss_pred             CEEEecCCCcc
Confidence            99999999863

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.05  E-value=3.4e-06  Score=71.30  Aligned_cols=74  Identities=12%  Similarity=-0.035  Sum_probs=51.1

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CC---------CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE-EcchhhHHHH--
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GC---------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH-TVRVETFLER--  221 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga---------~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi-~~D~~~~l~~--  221 (299)
                      .+.+|||+|||+|.+++.++.+ |.         .+|+++|+++.+.            . .+++++ ++|+......  
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~------------~-~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP------------L-EGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC------------C-TTCEEECSCCTTSHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc------------C-CCCeEEEeccCCCHHHHHH
Confidence            5789999999999999998876 54         6899999998431            1 235677 7886543211  


Q ss_pred             HhhhcCCCCCeeEEEEcCCCC
Q 022298          222 AEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       222 ~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      .... ...+.||+|++|++..
T Consensus        89 ~~~~-~~~~~fD~V~~~~~~~  108 (196)
T 2nyu_A           89 ILEV-LPGRRADVILSDMAPN  108 (196)
T ss_dssp             HHHH-SGGGCEEEEEECCCCC
T ss_pred             HHHh-cCCCCCcEEEeCCCCC
Confidence            0000 1135799999998654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.98  E-value=1.4e-05  Score=69.25  Aligned_cols=66  Identities=18%  Similarity=0.177  Sum_probs=51.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+     +++|+++.++ +.+++|        +++++++|+.++.       ...+.||+
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~-~~a~~~--------~~~~~~~d~~~~~-------~~~~~fD~  105 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMA-EIARKR--------GVFVLKGTAENLP-------LKDESFDF  105 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHH-HHHHHT--------TCEEEECBTTBCC-------SCTTCEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHH-HHHHhc--------CCEEEEcccccCC-------CCCCCeeE
Confidence            3789999999999999876544     9999999998 888887        2567888876531       12468999


Q ss_pred             EEEcCCC
Q 022298          235 MSVTPPY  241 (299)
Q Consensus       235 I~iDPPY  241 (299)
                      |++.-..
T Consensus       106 v~~~~~l  112 (219)
T 1vlm_A          106 ALMVTTI  112 (219)
T ss_dssp             EEEESCG
T ss_pred             EEEcchH
Confidence            9987653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.97  E-value=6.3e-07  Score=82.35  Aligned_cols=73  Identities=19%  Similarity=0.015  Sum_probs=51.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH-hCCCCcEEEE--EcchhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIH--TVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~-~g~~~~~~vi--~~D~~~~l~~~~~~~~~~~~  231 (299)
                      ++.+|||||||+|.++..++.+  .+|++||+++ .+ ..++++... .....+++++  ++|+.++         ..++
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~-~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~~~  148 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LG-TSGHEKPRLVETFGWNLITFKSKVDVTKM---------EPFQ  148 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CC-CTTSCCCCCCCCTTGGGEEEECSCCGGGC---------CCCC
T ss_pred             CCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hh-hhhhhchhhhhhcCCCeEEEeccCcHhhC---------CCCC
Confidence            5789999999999999988888  3699999998 33 233222100 0111146788  8898763         1468


Q ss_pred             eeEEEEcCC
Q 022298          232 FDYMSVTPP  240 (299)
Q Consensus       232 fDlI~iDPP  240 (299)
                      ||+|++|..
T Consensus       149 fD~Vvsd~~  157 (276)
T 2wa2_A          149 ADTVLCDIG  157 (276)
T ss_dssp             CSEEEECCC
T ss_pred             cCEEEECCC
Confidence            999999987

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.95  E-value=4.6e-05  Score=67.18  Aligned_cols=84  Identities=14%  Similarity=-0.060  Sum_probs=59.9

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC--CCcEEEEEcchhhH--------------H
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--LDVSSIHTVRVETF--------------L  219 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~--~~~~~vi~~D~~~~--------------l  219 (299)
                      ..+||++|||  .-++.++.....+|+.||.|++-+ +.+++|++..|+  .++++++.+|+.+.              +
T Consensus        31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~-~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWA-RMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHH-HHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            5799999985  444444443246899999999997 999999999998  78899999996532              1


Q ss_pred             HH-Hhhhc--CCCCCeeEEEEcCCCC
Q 022298          220 ER-AEQFV--GKDGPFDYMSVTPPYT  242 (299)
Q Consensus       220 ~~-~~~~~--~~~~~fDlI~iDPPY~  242 (299)
                      .. .....  ...++||+||+|=.+.
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k~  133 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRFR  133 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSSH
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCCc
Confidence            11 10000  1136899999998754

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.94  E-value=1.1e-05  Score=76.96  Aligned_cols=74  Identities=11%  Similarity=0.073  Sum_probs=51.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE-EcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH-TVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi-~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+...++.+|. +|+++|+++.++ +.++++    +.......+ ..++.. +..      ..++||
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~-~~a~~~----~~~~~~~~~~~~~~~~-l~~------~~~~fD  173 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVA-AKAREK----GIRVRTDFFEKATADD-VRR------TEGPAN  173 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHH-HHHHTT----TCCEECSCCSHHHHHH-HHH------HHCCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHH-HHHHHc----CCCcceeeechhhHhh-ccc------CCCCEE
Confidence            478999999999999998888887 799999999998 888776    332211111 122222 211      136899


Q ss_pred             EEEEcCCC
Q 022298          234 YMSVTPPY  241 (299)
Q Consensus       234 lI~iDPPY  241 (299)
                      +|++.--+
T Consensus       174 ~I~~~~vl  181 (416)
T 4e2x_A          174 VIYAANTL  181 (416)
T ss_dssp             EEEEESCG
T ss_pred             EEEECChH
Confidence            99986543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=97.91  E-value=3.5e-05  Score=69.91  Aligned_cols=82  Identities=11%  Similarity=0.106  Sum_probs=52.8

Q ss_pred             CCCEEEEECCccchHHHHHH----HcC-CCEE--EEEeCCHHHHHHHHHHHHHHh-CCCC-cEEEEEcchhhHHHHHhhh
Q 022298          155 RPGRWLDLYSGTGSVGIEAI----SRG-CSEV--HFVEMDPWVVSNVLIPNLEWT-GFLD-VSSIHTVRVETFLERAEQF  225 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAl----SrG-a~~V--~~VD~n~~Al~~~a~~N~~~~-g~~~-~~~vi~~D~~~~l~~~~~~  225 (299)
                      ++.+|||+|||+|.+++.++    .++ ...|  +++|.++.++ +.+++++... ++.+ ++.+..+++.++..... .
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml-~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI-AKYKELVAKTSNLENVKFAWHKETSSEYQSRML-E  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHH-HHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHH-T
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHH-HHHHHHHHhccCCCcceEEEEecchhhhhhhhc-c
Confidence            46799999999998876433    332 2334  9999999998 8999988653 3333 23445667665432110 0


Q ss_pred             cCCCCCeeEEEEc
Q 022298          226 VGKDGPFDYMSVT  238 (299)
Q Consensus       226 ~~~~~~fDlI~iD  238 (299)
                      ....++||+|++.
T Consensus       130 ~~~~~~fD~V~~~  142 (292)
T 2aot_A          130 KKELQKWDFIHMI  142 (292)
T ss_dssp             TTCCCCEEEEEEE
T ss_pred             ccCCCceeEEEEe
Confidence            0124689999975

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.91  E-value=2.3e-05  Score=72.91  Aligned_cols=79  Identities=16%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh-C--C-CCcEEEEEcchhhHHHHHhhhcCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT-G--F-LDVSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~-g--~-~~~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      ...+||=+|.|.|++.-|++.. +..+|+.||+|+..+ +++++-+... +  + +.+++++.+|+..+++.      ..
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv-~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~------~~  155 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVV-SFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------TS  155 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC------SS
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHH-HHHHhcCccccccccCCCcEEEEechHHHHHhh------cc
Confidence            4689999999999999998875 678999999999998 9998876432 1  1 35799999999999843      35


Q ss_pred             CCeeEEEEcCC
Q 022298          230 GPFDYMSVTPP  240 (299)
Q Consensus       230 ~~fDlI~iDPP  240 (299)
                      ++||+|++|.+
T Consensus       156 ~~yDvIi~D~~  166 (294)
T 3o4f_A          156 QTFDVIISDCT  166 (294)
T ss_dssp             CCEEEEEESCC
T ss_pred             ccCCEEEEeCC
Confidence            78999999975

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.88  E-value=7.4e-07  Score=81.36  Aligned_cols=73  Identities=19%  Similarity=-0.001  Sum_probs=50.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH-hCCCCcEEEE--EcchhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIH--TVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~-~g~~~~~~vi--~~D~~~~l~~~~~~~~~~~~  231 (299)
                      ++.+|||||||+|.++..++.+  .+|++||+++. + ..++++... .....++.++  ++|+.++         ..++
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m-~-~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~~~  140 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTL-G-VGGHEVPRITESYGWNIVKFKSRVDIHTL---------PVER  140 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECC-C-CSSCCCCCCCCBTTGGGEEEECSCCTTTS---------CCCC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchh-h-hhhhhhhhhhhccCCCeEEEecccCHhHC---------CCCC
Confidence            5789999999999999988887  46999999984 2 222221100 0001146778  8888763         1468


Q ss_pred             eeEEEEcCC
Q 022298          232 FDYMSVTPP  240 (299)
Q Consensus       232 fDlI~iDPP  240 (299)
                      ||+|++|..
T Consensus       141 fD~V~sd~~  149 (265)
T 2oxt_A          141 TDVIMCDVG  149 (265)
T ss_dssp             CSEEEECCC
T ss_pred             CcEEEEeCc
Confidence            999999987

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.82  E-value=2.2e-05  Score=74.08  Aligned_cols=76  Identities=18%  Similarity=0.277  Sum_probs=58.1

Q ss_pred             CEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          157 GRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      -+++|||||.|.+++.+...|.  ..|.++|+|+.|+ +..+.|...      ..++.+|+.++....  +.  ...+|+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~-~ty~~N~~~------~~~~~~DI~~~~~~~--~~--~~~~D~   72 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVAN-SVYKHNFPE------TNLLNRNIQQLTPQV--IK--KWNVDT   72 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHCTT------SCEECCCGGGCCHHH--HH--HTTCCE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHH-HHHHHhCCC------CceeccccccCCHHH--hc--cCCCCE
Confidence            4799999999999998877786  6689999999997 899888632      235678887664321  10  136999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      ++..||...
T Consensus        73 l~ggpPCQ~   81 (333)
T 4h0n_A           73 ILMSPPCQP   81 (333)
T ss_dssp             EEECCCCCC
T ss_pred             EEecCCCcc
Confidence            999999864

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=97.80  E-value=4e-05  Score=75.82  Aligned_cols=84  Identities=18%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH----------Hhhh
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER----------AEQF  225 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~----------~~~~  225 (299)
                      .-+++|||||.|.+++.+-..|...|.++|+|+.|+ +..+.|...   .....++++|+.++...          ...+
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~-~ty~~N~~~---~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAV-RTYKANHYC---DPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHH-HHHHHHSCC---CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHhccc---CCCcceeccchhhhhhccccccchhhHHhhh
Confidence            458999999999999887777887899999999997 888888521   11234678898876410          0000


Q ss_pred             cCCCCCeeEEEEcCCCCC
Q 022298          226 VGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~~  243 (299)
                      ......+|+|+..||+..
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~  181 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQP  181 (482)
T ss_dssp             HHHSCCCSEEEEECCCCC
T ss_pred             hhcCCCCCEEEecCCCcc
Confidence            001246899999999763

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.79  E-value=2.1e-05  Score=72.73  Aligned_cols=72  Identities=15%  Similarity=0.170  Sum_probs=57.8

Q ss_pred             EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      +|||||||.|.+++-+-..|..-|.++|+|+.|+ +..+.|.     .  ..++.+|+.++...      .-...|+++.
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~-~ty~~N~-----~--~~~~~~DI~~i~~~------~~~~~D~l~g   67 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIW-KTYESNH-----S--AKLIKGDISKISSD------EFPKCDGIIG   67 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTH-HHHHHHC-----C--SEEEESCGGGCCGG------GSCCCSEEEC
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHHC-----C--CCcccCChhhCCHh------hCCcccEEEe
Confidence            7999999999999876667988899999999997 8988884     2  25788998876422      1257899999


Q ss_pred             cCCCCC
Q 022298          238 TPPYTA  243 (299)
Q Consensus       238 DPPY~~  243 (299)
                      -||...
T Consensus        68 gpPCQ~   73 (331)
T 3ubt_Y           68 GPPSQS   73 (331)
T ss_dssp             CCCGGG
T ss_pred             cCCCCC
Confidence            999863

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=97.78  E-value=0.0002  Score=65.01  Aligned_cols=78  Identities=19%  Similarity=0.078  Sum_probs=55.5

Q ss_pred             CCEEEEECCcc---chHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---H---hhh
Q 022298          156 PGRWLDLYSGT---GSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---A---EQF  225 (299)
Q Consensus       156 ~~~VLDLfaGS---GalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~---~~~  225 (299)
                      ..+|||+|||+   |.+...+.... ..+|++||+|+.++ +.+++++..   .++++++++|+.+....   .   ..+
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l-~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~  153 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVL-THGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMI  153 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHH-HHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccC
Confidence            47999999999   98875554432 24799999999998 999998743   24689999998764210   0   001


Q ss_pred             cCCCCCeeEEEEcC
Q 022298          226 VGKDGPFDYMSVTP  239 (299)
Q Consensus       226 ~~~~~~fDlI~iDP  239 (299)
                        ...+||+|++.-
T Consensus       154 --d~~~~d~v~~~~  165 (274)
T 2qe6_A          154 --DFSRPAAIMLVG  165 (274)
T ss_dssp             --CTTSCCEEEETT
T ss_pred             --CCCCCEEEEEec
Confidence              124789999764

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.77  E-value=2.5e-05  Score=73.54  Aligned_cols=76  Identities=8%  Similarity=0.147  Sum_probs=56.6

Q ss_pred             CCEEEEECCccchHHHHHHHcCC--CEE-EEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGC--SEV-HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa--~~V-~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .-+++|||||.|.+++.+...|.  ..| .++|+|+.|+ +..+.|....       ++++|+.++....  +.  ...+
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~-~ty~~N~~~~-------~~~~DI~~~~~~~--i~--~~~~   77 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIAN-KIYSKNFKEE-------VQVKNLDSISIKQ--IE--SLNC   77 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHH-HHHHHHHCCC-------CBCCCTTTCCHHH--HH--HTCC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHH-HHHHHHCCCC-------cccCChhhcCHHH--hc--cCCC
Confidence            45899999999999998777784  667 7999999997 9999996321       4567776653221  11  1369


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |+++..||...
T Consensus        78 Dil~ggpPCQ~   88 (327)
T 3qv2_A           78 NTWFMSPPCQP   88 (327)
T ss_dssp             CEEEECCCCTT
T ss_pred             CEEEecCCccC
Confidence            99999999543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.76  E-value=5e-05  Score=73.01  Aligned_cols=82  Identities=21%  Similarity=0.156  Sum_probs=64.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh---CC----CCcEEEEEcchhhHHHHHhhhcC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT---GF----LDVSSIHTVRVETFLERAEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~---g~----~~~~~vi~~D~~~~l~~~~~~~~  227 (299)
                      ...+||=+|.|.|+..-|++.....+|+.||+|+..+ +++++-+...   .+    .++++++.+|+..++++..   .
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VV-e~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~---~  280 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVI-DGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA---K  280 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHH-HHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH---H
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHH-HHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh---h
Confidence            4689999999999999999987778999999999998 9998754211   11    1358899999999997542   1


Q ss_pred             CCCCeeEEEEcCC
Q 022298          228 KDGPFDYMSVTPP  240 (299)
Q Consensus       228 ~~~~fDlI~iDPP  240 (299)
                      ..++||+|++|.+
T Consensus       281 ~~~~yDvIIvDl~  293 (381)
T 3c6k_A          281 EGREFDYVINDLT  293 (381)
T ss_dssp             HTCCEEEEEEECC
T ss_pred             ccCceeEEEECCC
Confidence            2468999999953

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.68  E-value=5.7e-05  Score=69.27  Aligned_cols=75  Identities=19%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             CCEEEEECCccch----HHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHHHH---------------Hh--------C
Q 022298          156 PGRWLDLYSGTGS----VGIEAISR-G----CSEVHFVEMDPWVVSNVLIPNLE---------------WT--------G  203 (299)
Q Consensus       156 ~~~VLDLfaGSGa----lgIEAlSr-G----a~~V~~VD~n~~Al~~~a~~N~~---------------~~--------g  203 (299)
                      ..+|||+|||||.    +++.++.. |    ..+|+++|+|+.++ +.+++|+.               .+        +
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L-~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL-EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH-HHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHH-HHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            5699999999997    66554443 3    13799999999998 99999851               00        0


Q ss_pred             ---C----CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          204 ---F----LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       204 ---~----~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                         +    .+++++.++|+.+.-     + ...++||+|++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~-----~-~~~~~fDlI~c  219 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQ-----Y-NVPGPFDAIFC  219 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSS-----C-CCCCCEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCC-----C-CcCCCeeEEEE
Confidence               0    125788888876520     0 01357999998

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.64  E-value=7e-06  Score=76.35  Aligned_cols=73  Identities=15%  Similarity=0.097  Sum_probs=51.0

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeC----CHHHHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHhhhcCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM----DPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGKD  229 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~----n~~Al~~~a~~N~~~~g~~~~~~vi~~-D~~~~l~~~~~~~~~~  229 (299)
                      ++.+|||||||+|.++..++.+|  +|++||+    ++..+ +.+  +.+..+. ++++++++ |+..+         ..
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~~--~V~gvD~~~~~~~~~~-~~~--~~~~~~~-~~v~~~~~~D~~~l---------~~  146 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGLK--NVREVKGLTKGGPGHE-EPI--PMSTYGW-NLVRLQSGVDVFFI---------PP  146 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTST--TEEEEEEECCCSTTSC-CCC--CCCSTTG-GGEEEECSCCTTTS---------CC
T ss_pred             CCCEEEEEcCCCCHHHHHHHhcC--CEEEEeccccCchhHH-HHH--HhhhcCC-CCeEEEeccccccC---------Cc
Confidence            47899999999999999888883  5999999    44322 211  1111221 35788888 87653         13


Q ss_pred             CCeeEEEEcCCCC
Q 022298          230 GPFDYMSVTPPYT  242 (299)
Q Consensus       230 ~~fDlI~iDPPY~  242 (299)
                      ++||+|++|-+..
T Consensus       147 ~~fD~V~sd~~~~  159 (305)
T 2p41_A          147 ERCDTLLCDIGES  159 (305)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCCEEEECCccc
Confidence            6899999998764

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.56  E-value=0.00016  Score=67.72  Aligned_cols=79  Identities=18%  Similarity=0.159  Sum_probs=53.2

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCH---HHHHHHHHHHHHHhCCC---
Q 022298          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP---WVVSNVLIPNLEWTGFL---  205 (299)
Q Consensus       132 ttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~---~Al~~~a~~N~~~~g~~---  205 (299)
                      ....+.+.+.....        .++..|||.|||||+.+++|...|. +.+++|+++   ..+ ++++++++..+.-   
T Consensus       227 kp~~l~~~~i~~~~--------~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~-~~~~~Rl~~~~~~~~~  296 (319)
T 1eg2_A          227 KPAAVIERLVRALS--------HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYY-QKQLTFLQDDGLIDKA  296 (319)
T ss_dssp             CCHHHHHHHHHHHS--------CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHH-HHHHHHC---------
T ss_pred             CCHHHHHHHHHHhC--------CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHH-HHHHHHHHHccCCccc
Confidence            34455555555543        3588999999999999999998885 699999999   887 9999998876632   


Q ss_pred             CcEEEEEcchhhHHHH
Q 022298          206 DVSSIHTVRVETFLER  221 (299)
Q Consensus       206 ~~~~vi~~D~~~~l~~  221 (299)
                      .+.+++ ....+++..
T Consensus       297 ~~~~~~-~~~~~~~~~  311 (319)
T 1eg2_A          297 RSYEIV-EGAANFGAA  311 (319)
T ss_dssp             CCEEEE-ECGGGTHHH
T ss_pred             ceeeec-chHHHHHHH
Confidence            123333 344555544

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.55  E-value=8.4e-05  Score=69.36  Aligned_cols=60  Identities=15%  Similarity=0.074  Sum_probs=48.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~  218 (299)
                      ++..|||.|||||+.+++|...|. +.+++|+++..+ ++++++++..+..  ...++.|+.+.
T Consensus       252 ~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~-~~~~~r~~~~~~~--~~~~~~~~~~i  311 (323)
T 1boo_A          252 PDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYV-AASAFRFLDNNIS--EEKITDIYNRI  311 (323)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHGGGSCSCSC--HHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHH-HHHHHHHHhcccc--hHHHHHHHHHH
Confidence            688999999999999999999885 699999999997 9999998766643  23344454443

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.47  E-value=0.00013  Score=62.47  Aligned_cols=60  Identities=10%  Similarity=0.053  Sum_probs=44.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..+   + .+|+++|+++.                 +++++++|+.+..       ...+.||+
T Consensus        67 ~~~~vLDiG~G~G~~~~~l---~-~~v~~~D~s~~-----------------~~~~~~~d~~~~~-------~~~~~fD~  118 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSI---R-NPVHCFDLASL-----------------DPRVTVCDMAQVP-------LEDESVDV  118 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHC---C-SCEEEEESSCS-----------------STTEEESCTTSCS-------CCTTCEEE
T ss_pred             CCCeEEEECCcCCHHHHHh---h-ccEEEEeCCCC-----------------CceEEEeccccCC-------CCCCCEeE
Confidence            4689999999999998865   2 46999999986                 1346778876521       12467999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++.....
T Consensus       119 v~~~~~l~  126 (215)
T 2zfu_A          119 AVFCLSLM  126 (215)
T ss_dssp             EEEESCCC
T ss_pred             EEEehhcc
Confidence            99987654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.47  E-value=0.00021  Score=69.37  Aligned_cols=71  Identities=14%  Similarity=0.055  Sum_probs=50.6

Q ss_pred             CCCEEEEECCc------cchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHhh
Q 022298          155 RPGRWLDLYSG------TGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQ  224 (299)
Q Consensus       155 ~~~~VLDLfaG------SGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~--l~~~~~  224 (299)
                      .+.+|||+|||      +|..++..+.+  ...+|++||+|+.+. .         . ..+++++++|+.+.  ....  
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-~---------~-~~rI~fv~GDa~dlpf~~~l--  282 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-V---------D-ELRIRTIQGDQNDAEFLDRI--  282 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-G---------C-BTTEEEEECCTTCHHHHHHH--
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-h---------c-CCCcEEEEecccccchhhhh--
Confidence            56899999999      78888877754  334799999999862 1         1 24689999998763  2111  


Q ss_pred             hcCCCCCeeEEEEcC
Q 022298          225 FVGKDGPFDYMSVTP  239 (299)
Q Consensus       225 ~~~~~~~fDlI~iDP  239 (299)
                       ....++||+|++|=
T Consensus       283 -~~~d~sFDlVisdg  296 (419)
T 3sso_A          283 -ARRYGPFDIVIDDG  296 (419)
T ss_dssp             -HHHHCCEEEEEECS
T ss_pred             -hcccCCccEEEECC
Confidence             01126899999974

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.38  E-value=9.4e-05  Score=69.00  Aligned_cols=71  Identities=11%  Similarity=0.015  Sum_probs=52.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.++..++.+. ..+++++|+ +..+ .  +++++..+..++++++.+|+.+.+         . .||
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~--~~~~~~~~~~~~v~~~~~d~~~~~---------p-~~D  249 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVV-A--RHRLDAPDVAGRWKVVEGDFLREV---------P-HAD  249 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHH-T--TCCCCCGGGTTSEEEEECCTTTCC---------C-CCS
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHh-h--cccccccCCCCCeEEEecCCCCCC---------C-CCc
Confidence            46799999999999999888753 346899999 4444 3  555554566677999999986321         2 799


Q ss_pred             EEEEcC
Q 022298          234 YMSVTP  239 (299)
Q Consensus       234 lI~iDP  239 (299)
                      +|++.-
T Consensus       250 ~v~~~~  255 (348)
T 3lst_A          250 VHVLKR  255 (348)
T ss_dssp             EEEEES
T ss_pred             EEEEeh
Confidence            998754

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.31  E-value=0.0003  Score=63.88  Aligned_cols=83  Identities=7%  Similarity=-0.184  Sum_probs=54.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc-------CC------CEEEEEeCCH---HHH----------HHHHHHHHHHh------
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-------GC------SEVHFVEMDP---WVV----------SNVLIPNLEWT------  202 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-------Ga------~~V~~VD~n~---~Al----------~~~a~~N~~~~------  202 (299)
                      ...+|||+|+|+|.-.+.++..       +.      .+++.+|.+|   +.+          ..+++++++..      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3569999999999877664431       21      3799999987   222          13667776641      


Q ss_pred             ----CCC---CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          203 ----GFL---DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       203 ----g~~---~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                          .+.   .+++++.+|+.+.+.....  .....||+||+||
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~--~~~~~~D~iflD~  181 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDD--SLNQKVDAWFLDG  181 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCG--GGTTCEEEEEECS
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhccc--ccCCeEEEEEECC
Confidence                121   2477999999987654210  0013799999998

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.28  E-value=0.0011  Score=62.86  Aligned_cols=82  Identities=17%  Similarity=0.106  Sum_probs=62.8

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++..++|..+|.|.-+.+.+.+ | ..+|+++|+|+.|+ +.++ ++    ..+++++++++..++...+... +..+++
T Consensus        57 pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al-~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~-g~~~~v  129 (347)
T 3tka_A           57 PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAI-AVAK-TI----DDPRFSIIHGPFSALGEYVAER-DLIGKI  129 (347)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHT-TC----CCTTEEEEESCGGGHHHHHHHT-TCTTCE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHH-hh----cCCcEEEEeCCHHHHHHHHHhc-CCCCcc
Confidence            5789999999999999988876 3 45899999999998 7773 33    2467999999887765443211 112369


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |.|++|-.|..
T Consensus       130 DgILfDLGVSS  140 (347)
T 3tka_A          130 DGILLDLGVSS  140 (347)
T ss_dssp             EEEEEECSCCH
T ss_pred             cEEEECCccCH
Confidence            99999999875

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.22  E-value=0.00035  Score=64.64  Aligned_cols=63  Identities=10%  Similarity=-0.001  Sum_probs=44.1

Q ss_pred             CCCEEEEECCcc------chHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE-EEcchhhHHHHHhhhc
Q 022298          155 RPGRWLDLYSGT------GSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI-HTVRVETFLERAEQFV  226 (299)
Q Consensus       155 ~~~~VLDLfaGS------GalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~v-i~~D~~~~l~~~~~~~  226 (299)
                      .+.+|||+|||+      |+ .+.+...+ ..+|++||+++. +             . ++++ +++|+.+..       
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-v-------------~-~v~~~i~gD~~~~~-------  119 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-V-------------S-DADSTLIGDCATVH-------  119 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-B-------------C-SSSEEEESCGGGCC-------
T ss_pred             CCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-C-------------C-CCEEEEECccccCC-------
Confidence            578999999944      77 33333334 357999999986 1             1 3567 999987642       


Q ss_pred             CCCCCeeEEEEcCCC
Q 022298          227 GKDGPFDYMSVTPPY  241 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY  241 (299)
                       ..++||+|++|++.
T Consensus       120 -~~~~fD~Vvsn~~~  133 (290)
T 2xyq_A          120 -TANKWDLIISDMYD  133 (290)
T ss_dssp             -CSSCEEEEEECCCC
T ss_pred             -ccCcccEEEEcCCc
Confidence             12579999999753

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.21  E-value=0.00027  Score=65.90  Aligned_cols=66  Identities=15%  Similarity=-0.007  Sum_probs=49.4

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ...+|||+|||+|.++..++.+ ...+++++|+ +.++ +.++++      . +++++.+|+.+.+          ..||
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~------~-~v~~~~~d~~~~~----------p~~D  248 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-ENLSGS------N-NLTYVGGDMFTSI----------PNAD  248 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCB------T-TEEEEECCTTTCC----------CCCS
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHH-hhcccC------C-CcEEEeccccCCC----------CCcc
Confidence            3579999999999999988876 2347999999 8876 665541      2 3889999986421          2499


Q ss_pred             EEEEcC
Q 022298          234 YMSVTP  239 (299)
Q Consensus       234 lI~iDP  239 (299)
                      +|++.-
T Consensus       249 ~v~~~~  254 (352)
T 1fp2_A          249 AVLLKY  254 (352)
T ss_dssp             EEEEES
T ss_pred             EEEeeh
Confidence            998743

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.15  E-value=0.0005  Score=65.87  Aligned_cols=71  Identities=14%  Similarity=0.028  Sum_probs=54.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .|.+||||||..|..+-.++.+|+ +|++||..+-.-  .+.      . ..+++++++|++.+..       ...+||+
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~--~l~------~-~~~V~~~~~d~~~~~~-------~~~~~D~  273 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQ--SLM------D-TGQVTWLREDGFKFRP-------TRSNISW  273 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCH--HHH------T-TTCEEEECSCTTTCCC-------CSSCEEE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcCh--hhc------c-CCCeEEEeCccccccC-------CCCCcCE
Confidence            588999999999999999999997 699999876432  221      1 1358899999887631       2367999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++|.-..
T Consensus       274 vvsDm~~~  281 (375)
T 4auk_A          274 MVCDMVEK  281 (375)
T ss_dssp             EEECCSSC
T ss_pred             EEEcCCCC
Confidence            99998543

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.12  E-value=0.00092  Score=63.57  Aligned_cols=79  Identities=16%  Similarity=0.104  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~  213 (299)
                      .+.+.+.+.+...... ....+..|||+|.|.|++..+++.+ .+.+|++||+|++.+ ..+++..   . .++++++.+
T Consensus        39 ~i~~~Iv~~~~l~~~~-~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~-~~L~~~~---~-~~~l~ii~~  112 (353)
T 1i4w_A           39 TVYNKIFDKLDLTKTY-KHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY-KFLNAKF---E-GSPLQILKR  112 (353)
T ss_dssp             HHHHHHHHHHCGGGTC-CCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH-HHHHHHT---T-TSSCEEECS
T ss_pred             HHHHHHHHhccCCccc-CcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHH-HHHHHhc---c-CCCEEEEEC
Confidence            4666666666432000 0003589999999999999998876 356899999999987 8887765   2 246899999


Q ss_pred             chhhHH
Q 022298          214 RVETFL  219 (299)
Q Consensus       214 D~~~~l  219 (299)
                      |+.++-
T Consensus       113 D~l~~~  118 (353)
T 1i4w_A          113 DPYDWS  118 (353)
T ss_dssp             CTTCHH
T ss_pred             Cccchh
Confidence            998774

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.11  E-value=0.00081  Score=63.08  Aligned_cols=70  Identities=14%  Similarity=0.061  Sum_probs=52.1

Q ss_pred             CCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ..+|||+|||+|.+.++++.+. ..+++..|. |..+ +.+++++...+ .++++++.+|+++.         ....+|+
T Consensus       180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~-~~a~~~~~~~~-~~rv~~~~gD~~~~---------~~~~~D~  247 (353)
T 4a6d_A          180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVV-WTAKQHFSFQE-EEQIDFQEGDFFKD---------PLPEADL  247 (353)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHH-HHHHHHSCC---CCSEEEEESCTTTS---------CCCCCSE
T ss_pred             CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHH-HHHHHhhhhcc-cCceeeecCccccC---------CCCCceE
Confidence            5799999999999999988763 346888887 7777 88988876544 56799999997642         1234677


Q ss_pred             EEE
Q 022298          235 MSV  237 (299)
Q Consensus       235 I~i  237 (299)
                      +++
T Consensus       248 ~~~  250 (353)
T 4a6d_A          248 YIL  250 (353)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            775

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.07  E-value=0.0005  Score=64.63  Aligned_cols=67  Identities=15%  Similarity=0.004  Sum_probs=50.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ...+|||+|||+|.+...++.++ ..+++++|+ +.++ +.+++      . .+++++.+|+++.+          ..||
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~------~-~~v~~~~~d~~~~~----------~~~D  269 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-ENAPP------L-SGIEHVGGDMFASV----------PQGD  269 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCC------C-TTEEEEECCTTTCC----------CCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHH-Hhhhh------c-CCCEEEeCCcccCC----------CCCC
Confidence            46799999999999999988775 347889999 8776 65543      1 34889999987521          2399


Q ss_pred             EEEEcCC
Q 022298          234 YMSVTPP  240 (299)
Q Consensus       234 lI~iDPP  240 (299)
                      +|++.--
T Consensus       270 ~v~~~~~  276 (372)
T 1fp1_D          270 AMILKAV  276 (372)
T ss_dssp             EEEEESS
T ss_pred             EEEEecc
Confidence            9998543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.83  E-value=0.0062  Score=56.08  Aligned_cols=79  Identities=13%  Similarity=0.030  Sum_probs=59.3

Q ss_pred             CCCEEEEECCccchHHHHHHH--c--C--CCEEEEEeCCH--------------------------HHHHHHHHHHHHHh
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS--R--G--CSEVHFVEMDP--------------------------WVVSNVLIPNLEWT  202 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS--r--G--a~~V~~VD~n~--------------------------~Al~~~a~~N~~~~  202 (299)
                      ..+.||++|+..|.-++..+.  +  |  ..+++++|...                          ..+ +.+++|++..
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~-~~ar~n~~~~  184 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSE-EEVRRNFRNY  184 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCH-HHHHHHHHHT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHH-HHHHHHHHHc
Confidence            367999999999987765432  1  1  34699999641                          134 6789999999


Q ss_pred             CCC-CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          203 GFL-DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       203 g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      |+. ++++++.+|+.+.+...     ..++||+|++|-
T Consensus       185 gl~~~~I~li~Gda~etL~~~-----~~~~~d~vfIDa  217 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTA-----PIDTLAVLRMDG  217 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTC-----CCCCEEEEEECC
T ss_pred             CCCcCceEEEEeCHHHHHhhC-----CCCCEEEEEEcC
Confidence            984 78999999998876432     236899999996

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=96.79  E-value=0.0029  Score=65.46  Aligned_cols=57  Identities=21%  Similarity=0.352  Sum_probs=41.1

Q ss_pred             CCEEEEECCccchHHHHHHHcC------CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 022298          156 PGRWLDLYSGTGSVGIEAISRG------CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrG------a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l  219 (299)
                      ..+|||||||.|.+++-+-..|      ..-+.++|+|+.|+ +..+.|.-     + ..+++.|+.+++
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~-~Ty~~Nhp-----~-~~~~~~di~~i~  274 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFAC-QSLKYNHP-----Q-TEVRNEKADEFL  274 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHH-HHHHHHCT-----T-SEEEESCHHHHH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHH-HHHHHHCC-----C-CceecCcHHHhh
Confidence            3579999999998876554444      45689999999997 88888841     2 345666665543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=96.79  E-value=0.0011  Score=62.40  Aligned_cols=54  Identities=13%  Similarity=0.044  Sum_probs=42.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~  217 (299)
                      ...+|||+|||+|.++++++.+. ..+++++|+ +.++ +.++++       ++++++.+|+++
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~d~~~  257 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVI-QDAPAF-------SGVEHLGGDMFD  257 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCC-------TTEEEEECCTTT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHH-Hhhhhc-------CCCEEEecCCCC
Confidence            35799999999999999988753 347999999 7776 555432       458889999865

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=96.73  E-value=0.0013  Score=61.37  Aligned_cols=68  Identities=15%  Similarity=-0.077  Sum_probs=49.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ...+|||+|||+|.++.+++.+. ..+++++|+ +.++ +.+++      .. +++++.+|+++.          ...||
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~------~~-~v~~~~~d~~~~----------~~~~D  253 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVV-GNLTG------NE-NLNFVGGDMFKS----------IPSAD  253 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHH-SSCCC------CS-SEEEEECCTTTC----------CCCCS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHH-hhccc------CC-CcEEEeCccCCC----------CCCce
Confidence            35799999999999999988764 347999999 6665 55443      23 388999998752          12599


Q ss_pred             EEEEcCCC
Q 022298          234 YMSVTPPY  241 (299)
Q Consensus       234 lI~iDPPY  241 (299)
                      +|++.-..
T Consensus       254 ~v~~~~vl  261 (358)
T 1zg3_A          254 AVLLKWVL  261 (358)
T ss_dssp             EEEEESCG
T ss_pred             EEEEcccc
Confidence            99986543

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=96.66  E-value=0.0035  Score=66.99  Aligned_cols=81  Identities=20%  Similarity=0.222  Sum_probs=58.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHh--hhc-----
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE--QFV-----  226 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~--~~~-----  226 (299)
                      ..-+++|||||.|.+++-+-..|. ..|.++|+|+.|+ +..+.|.     .+ ..++.+|+.+++....  .+.     
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~-~ty~~N~-----p~-~~~~~~DI~~l~~~~~~~di~~~~~~  611 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAA-QAFRLNN-----PG-STVFTEDCNILLKLVMAGETTNSRGQ  611 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHH-HHHHHHC-----TT-SEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHH-HHHHHhC-----CC-CccccccHHHHhhhccchhhhhhhhh
Confidence            345899999999999987766786 6788999999997 8888883     22 4577888877643210  000     


Q ss_pred             --CCCCCeeEEEEcCCCC
Q 022298          227 --GKDGPFDYMSVTPPYT  242 (299)
Q Consensus       227 --~~~~~fDlI~iDPPY~  242 (299)
                        ...+.+|+|+.-||..
T Consensus       612 ~lp~~~~vDll~GGpPCQ  629 (1002)
T 3swr_A          612 RLPQKGDVEMLCGGPPCQ  629 (1002)
T ss_dssp             BCCCTTTCSEEEECCCCT
T ss_pred             hcccCCCeeEEEEcCCCc
Confidence              0124689999999975

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=96.63  E-value=0.0018  Score=59.64  Aligned_cols=60  Identities=20%  Similarity=0.122  Sum_probs=44.0

Q ss_pred             CEEEEECCccch--HHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 022298          157 GRWLDLYSGTGS--VGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (299)
Q Consensus       157 ~~VLDLfaGSGa--lgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~  218 (299)
                      .+|||||||+|+  ...+.+.+  ...+|++||.|+.++ +.+++++...+ ..+++++++|+.++
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mL-a~Ar~~l~~~~-~~~~~~v~aD~~~~  143 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVL-TLSQGLLASTP-EGRTAYVEADMLDP  143 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHH-HTTHHHHCCCS-SSEEEEEECCTTCH
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHH-HHHHHHhccCC-CCcEEEEEecccCh
Confidence            589999999733  22343332  234799999999998 89988875433 24589999999876

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=96.60  E-value=0.0019  Score=60.87  Aligned_cols=54  Identities=11%  Similarity=0.018  Sum_probs=42.1

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~  217 (299)
                      ...+|||+|||+|.+..+++.+ ...+++++|+ +.++ +.++++       ++++++.+|+++
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~D~~~  255 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVI-SEAPQF-------PGVTHVGGDMFK  255 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCC-------TTEEEEECCTTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHH-Hhhhhc-------CCeEEEeCCcCC
Confidence            4679999999999999988875 3347999999 7766 555432       458899999875

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=96.50  E-value=0.0073  Score=66.20  Aligned_cols=82  Identities=18%  Similarity=0.237  Sum_probs=59.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHh--hh------
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE--QF------  225 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~--~~------  225 (299)
                      ..-+++|||||.|.+++-+-..|. ..+.++|+|+.|+ +..+.|.     .+ ..++.+|+.+++....  ..      
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~-~ty~~N~-----p~-~~~~~~DI~~l~~~~~~gdi~~~~~~  922 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAA-QAFRLNN-----PG-TTVFTEDCNVLLKLVMAGEVTNSLGQ  922 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHH-HHHHHHC-----TT-SEEECSCHHHHHHHHTTTCSBCSSCC
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHH-HHHHHhC-----CC-CcEeeccHHHHhHhhhccchhhhhhh
Confidence            346899999999999987767786 5689999999997 8888883     22 3567888877654321  00      


Q ss_pred             -cCCCCCeeEEEEcCCCCC
Q 022298          226 -VGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       226 -~~~~~~fDlI~iDPPY~~  243 (299)
                       ....+.+|+|+.-||...
T Consensus       923 ~lp~~~~vDvl~GGpPCQ~  941 (1330)
T 3av4_A          923 RLPQKGDVEMLCGGPPCQG  941 (1330)
T ss_dssp             BCCCTTTCSEEEECCCCTT
T ss_pred             hccccCccceEEecCCCcc
Confidence             001236899999999864

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.28  E-value=0.0097  Score=57.17  Aligned_cols=58  Identities=17%  Similarity=0.159  Sum_probs=46.3

Q ss_pred             CCCEEEEECCccchHHHHHH-Hc-C-CCEEEEEeCCHHHHHHHHHHHHHH--hCCC-CcEEEEEc
Q 022298          155 RPGRWLDLYSGTGSVGIEAI-SR-G-CSEVHFVEMDPWVVSNVLIPNLEW--TGFL-DVSSIHTV  213 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAl-Sr-G-a~~V~~VD~n~~Al~~~a~~N~~~--~g~~-~~~~vi~~  213 (299)
                      ++..|+|+||+.|.+++.++ .. | ..+|+++|-+|.++ +.+++|++.  |+.. +++++++.
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~-~~L~~n~~~~~N~~~~~~v~~~~~  289 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINL-QTLQNVLRRYTDTNFASRITVHGC  289 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHH-HHHHHHHHHTTTSTTGGGEEEECS
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHH-HHHHHHHHhhhccCCCCCEEEEEe
Confidence            57899999999999999877 33 3 36899999999998 999999998  3322 45666553

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.16  E-value=0.001  Score=60.34  Aligned_cols=76  Identities=14%  Similarity=0.057  Sum_probs=54.1

Q ss_pred             CCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~-D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+||||||++|.++-.++. .|+.+|+++|+...-. + --...+.+|. +.+++.++ |++..         ...++
T Consensus        78 ~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~gh-e-~P~~~~s~gw-n~v~fk~gvDv~~~---------~~~~~  145 (267)
T 3p8z_A           78 PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGH-E-EPVPMSTYGW-NIVKLMSGKDVFYL---------PPEKC  145 (267)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTS-C-CCCCCCCTTT-TSEEEECSCCGGGC---------CCCCC
T ss_pred             CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCc-c-CcchhhhcCc-CceEEEeccceeec---------CCccc
Confidence            567999999999999996654 6888999999987542 1 0012234555 44888888 97543         13679


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |.|++|--=.
T Consensus       146 DtllcDIgeS  155 (267)
T 3p8z_A          146 DTLLCDIGES  155 (267)
T ss_dssp             SEEEECCCCC
T ss_pred             cEEEEecCCC
Confidence            9999997433

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=96.14  E-value=0.0033  Score=60.74  Aligned_cols=45  Identities=11%  Similarity=-0.085  Sum_probs=36.8

Q ss_pred             CCEEEEECCccchHHHHHHHcC--CCE----EEEEeCCHHHHHHHHHHHHHH
Q 022298          156 PGRWLDLYSGTGSVGIEAISRG--CSE----VHFVEMDPWVVSNVLIPNLEW  201 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrG--a~~----V~~VD~n~~Al~~~a~~N~~~  201 (299)
                      .-+|+|||||.|++.+.+-..|  ..-    |.++|+|+.|+ +..+.|...
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~-~ty~~n~~~   60 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAI-VSYVAIHSK   60 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHH-HHHHHHHCS
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHH-HHHHHHcCC
Confidence            4689999999999988665556  445    88999999997 899988753

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.43  E-value=0.0099  Score=53.27  Aligned_cols=32  Identities=22%  Similarity=0.529  Sum_probs=26.0

Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      .+++++|+.+++..+     ..++||+||+||||+..
T Consensus         5 ~~l~~gD~~~~l~~l-----~~~~vdlI~~DPPY~~~   36 (260)
T 1g60_A            5 NKIHQMNCFDFLDQV-----ENKSVQLAVIDPPYNLS   36 (260)
T ss_dssp             SSEEECCHHHHHHHS-----CTTCEEEEEECCCCSSC
T ss_pred             CeEEechHHHHHHhc-----cccccCEEEECCCCCCC
Confidence            357899999988654     24689999999999876

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=95.14  E-value=0.0036  Score=58.35  Aligned_cols=74  Identities=14%  Similarity=0.022  Sum_probs=48.8

Q ss_pred             CCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~-D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+||||||++|.++-.|+. .|+.+|+++|+...-- +- -..++.++. +-+.++.+ |+...         ...++
T Consensus        94 ~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~h-e~-P~~~~ql~w-~lV~~~~~~Dv~~l---------~~~~~  161 (321)
T 3lkz_A           94 PVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGH-EE-PQLVQSYGW-NIVTMKSGVDVFYR---------PSECC  161 (321)
T ss_dssp             CCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTS-CC-CCCCCBTTG-GGEEEECSCCTTSS---------CCCCC
T ss_pred             CCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCc-cC-cchhhhcCC-cceEEEeccCHhhC---------CCCCC
Confidence            567999999999999996654 6888999999987621 10 000011222 12566666 76432         12679


Q ss_pred             eEEEEcCC
Q 022298          233 DYMSVTPP  240 (299)
Q Consensus       233 DlI~iDPP  240 (299)
                      |+|++|--
T Consensus       162 D~ivcDig  169 (321)
T 3lkz_A          162 DTLLCDIG  169 (321)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEECc
Confidence            99999986

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.77  E-value=0.02  Score=53.38  Aligned_cols=33  Identities=15%  Similarity=0.318  Sum_probs=26.5

Q ss_pred             cEEEE-EcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          207 VSSIH-TVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       207 ~~~vi-~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      ..+++ ++|+.+++..+     ..++||+||+||||...
T Consensus        38 ~~~l~i~gD~l~~L~~l-----~~~svDlI~tDPPY~~~   71 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKL-----PDDSVQLIICDPPYNIM   71 (319)
T ss_dssp             EEEEEEECCHHHHHHTS-----CTTCEEEEEECCCSBCC
T ss_pred             cceEEECCcHHHHHHhC-----ccCCcCEEEECCCCCCC
Confidence            46788 99999988643     24689999999999875

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=94.65  E-value=0.011  Score=48.72  Aligned_cols=59  Identities=14%  Similarity=0.075  Sum_probs=42.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||++||+               +.+|+++.++ +.++++...     +++++++|+.++...    ....++||+
T Consensus        12 ~g~~vL~~~~g~---------------v~vD~s~~ml-~~a~~~~~~-----~~~~~~~d~~~~~~~----~~~~~~fD~   66 (176)
T 2ld4_A           12 AGQFVAVVWDKS---------------SPVEALKGLV-DKLQALTGN-----EGRVSVENIKQLLQS----AHKESSFDI   66 (176)
T ss_dssp             TTSEEEEEECTT---------------SCHHHHHHHH-HHHHHHTTT-----TSEEEEEEGGGGGGG----CCCSSCEEE
T ss_pred             CCCEEEEecCCc---------------eeeeCCHHHH-HHHHHhccc-----CcEEEEechhcCccc----cCCCCCEeE
Confidence            578999999986               2389999998 888877532     267889998865310    002468999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++.
T Consensus        67 V~~~   70 (176)
T 2ld4_A           67 ILSG   70 (176)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9985

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.42  E-value=0.024  Score=52.62  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=26.7

Q ss_pred             CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       206 ~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      +...++++|+.+.+..+     ..++||+||+||||...
T Consensus        13 ~~~~ii~gD~~~~l~~l-----~~~svDlI~tDPPY~~~   46 (323)
T 1boo_A           13 SNGSMYIGDSLELLESF-----PEESISLVMTSPPFALQ   46 (323)
T ss_dssp             SSEEEEESCHHHHGGGS-----CSSCEEEEEECCCCSSS
T ss_pred             CCceEEeCcHHHHHhhC-----CCCCeeEEEECCCCCCC
Confidence            35789999998876532     24689999999999865

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.99  E-value=0.029  Score=51.16  Aligned_cols=32  Identities=19%  Similarity=0.375  Sum_probs=25.5

Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +.+++++|+.+++..+     ..++||+|++||||..
T Consensus        21 ~~~i~~gD~~~~l~~l-----~~~s~DlIvtdPPY~~   52 (297)
T 2zig_A           21 VHRLHVGDAREVLASF-----PEASVHLVVTSPPYWT   52 (297)
T ss_dssp             CEEEEESCHHHHHTTS-----CTTCEEEEEECCCCCC
T ss_pred             CCEEEECcHHHHHhhC-----CCCceeEEEECCCCCC
Confidence            4689999999876432     2468999999999974

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=92.07  E-value=0.091  Score=48.27  Aligned_cols=78  Identities=14%  Similarity=0.029  Sum_probs=46.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||||||.|.++-.|+.+ |+..|+++|+.-+.. ...... +..+. + +..++.++...       .....+||
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~-~~pi~~-~~~g~-~-ii~~~~~~dv~-------~l~~~~~D  142 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH-EKPMNV-QSLGW-N-IITFKDKTDIH-------RLEPVKCD  142 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC-CCCCCC-CBTTG-G-GEEEECSCCTT-------TSCCCCCS
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc-cccccc-CcCCC-C-eEEEeccceeh-------hcCCCCcc
Confidence            4679999999999999988765 777888888863210 000000 00111 2 33345543211       01246899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|++|---+.
T Consensus       143 lVlsD~apns  152 (277)
T 3evf_A          143 TLLCDIGESS  152 (277)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEecCccCc
Confidence            9999975443

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=91.71  E-value=0.1  Score=48.10  Aligned_cols=77  Identities=17%  Similarity=0.038  Sum_probs=47.8

Q ss_pred             CCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc--chhhHHHHHhhhcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV--RVETFLERAEQFVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~--D~~~~l~~~~~~~~~~~~  231 (299)
                      .+.+|||||||.|.++-.|+. .|+..|+++|+..... ...... +..+. + +...+.  |+..+         ...+
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~-~~pi~~-~~~g~-~-ii~~~~~~dv~~l---------~~~~  156 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGH-EKPIMR-TTLGW-N-LIRFKDKTDVFNM---------EVIP  156 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTS-CCCCCC-CBTTG-G-GEEEECSCCGGGS---------CCCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcc-cccccc-ccCCC-c-eEEeeCCcchhhc---------CCCC
Confidence            567999999999999998875 5788899999975421 111100 01111 2 222332  43221         2478


Q ss_pred             eeEEEEcCCCCCC
Q 022298          232 FDYMSVTPPYTAV  244 (299)
Q Consensus       232 fDlI~iDPPY~~~  244 (299)
                      +|+|++|---+.+
T Consensus       157 ~DvVLSDmApnsG  169 (282)
T 3gcz_A          157 GDTLLCDIGESSP  169 (282)
T ss_dssp             CSEEEECCCCCCS
T ss_pred             cCEEEecCccCCC
Confidence            9999999766643

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=91.67  E-value=0.04  Score=50.32  Aligned_cols=74  Identities=14%  Similarity=0.071  Sum_probs=45.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHc-CCC----EEEEEe--CCHHHHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHhhh
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR-GCS----EVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQF  225 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr-Ga~----~V~~VD--~n~~Al~~~a~~N~~~~g~~~~~~vi~~-D~~~~l~~~~~~  225 (299)
                      .++.+||||||+-|+.+-.|+.+ +..    .|+++|  +.|-..   +-     .|. +-+++.++ |+.+.       
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~---~~-----~Gv-~~i~~~~G~Df~~~-------  135 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM---QS-----YGW-NIVTMKSGVDVFYK-------  135 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC---CS-----TTG-GGEEEECSCCGGGS-------
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc---cC-----CCc-eEEEeeccCCccCC-------
Confidence            35889999999999999998876 222    344445  222110   00     111 22455557 98762       


Q ss_pred             cCCCCCeeEEEEcCCCCCCC
Q 022298          226 VGKDGPFDYMSVTPPYTAVD  245 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~~~~  245 (299)
                        ...++|+|++|---+.+.
T Consensus       136 --~~~~~DvVLSDMAPnSG~  153 (269)
T 2px2_A          136 --PSEISDTLLCDIGESSPS  153 (269)
T ss_dssp             --CCCCCSEEEECCCCCCSC
T ss_pred             --CCCCCCEEEeCCCCCCCc
Confidence              135899999998545443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=89.94  E-value=0.19  Score=46.59  Aligned_cols=36  Identities=25%  Similarity=0.156  Sum_probs=30.6

Q ss_pred             CCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPW  189 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~  189 (299)
                      ..+.+||||||+.|+++-.|+.+ |+..|+++|+...
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE  116 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence            36789999999999999988864 7878999999643

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=88.97  E-value=0.23  Score=50.30  Aligned_cols=81  Identities=15%  Similarity=-0.002  Sum_probs=51.2

Q ss_pred             CCEEEEECCccchHHHHHHHc----------C---CCEEEEEeCCHHHHHHHHHHHHHH---------------------
Q 022298          156 PGRWLDLYSGTGSVGIEAISR----------G---CSEVHFVEMDPWVVSNVLIPNLEW---------------------  201 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSr----------G---a~~V~~VD~n~~Al~~~a~~N~~~---------------------  201 (299)
                      .-+|+|+|-|+|.-.+.++..          .   .-+++.+|..|... +.+++-+..                     
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHV-ADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCH-HHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCH-HHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            458999999999877766542          1   13689999966443 444432211                     


Q ss_pred             ---hCCCC---cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          202 ---TGFLD---VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       202 ---~g~~~---~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                         +.+.+   .++++.+|+.+.+..+.  ......+|.+|+|+
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~--~~~~~~~da~flD~  179 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLD--DSLNNQVDAWFLDG  179 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCC--GGGTTCEEEEEECS
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcc--cccCCceeEEEECC
Confidence               11122   46788899998875431  00136799999998

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=88.22  E-value=3.8  Score=36.56  Aligned_cols=82  Identities=13%  Similarity=0.032  Sum_probs=55.0

Q ss_pred             CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhcC
Q 022298          154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFVG  227 (299)
Q Consensus       154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~~  227 (299)
                      ++++.+|=-|+++|   +++..++..|+ +|+.+|.+++.+ +-+.+.++..|.  ++..+++|+.+...-.   .....
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~-~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~   80 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRL-NQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFE   80 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence            56888888887776   23344456788 599999999987 777777877763  4778888876432111   00111


Q ss_pred             CCCCeeEEEEcC
Q 022298          228 KDGPFDYMSVTP  239 (299)
Q Consensus       228 ~~~~fDlI~iDP  239 (299)
                      ..++.|+++-|-
T Consensus        81 ~~G~iDiLVNNA   92 (254)
T 4fn4_A           81 TYSRIDVLCNNA   92 (254)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            226789999765

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=86.63  E-value=1.4  Score=40.82  Aligned_cols=73  Identities=14%  Similarity=0.218  Sum_probs=42.5

Q ss_pred             CCCEEEEECCccchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEA---l-SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+||-.||  |.+|+.+   + .+|+.+|+++|.+++.+ +.+++    +|..   .++..+-.++......+.  .+
T Consensus       190 ~g~~VlV~Ga--G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~---~vi~~~~~~~~~~~~~~~--~g  257 (371)
T 1f8f_A          190 PASSFVTWGA--GAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQ----LGAT---HVINSKTQDPVAAIKEIT--DG  257 (371)
T ss_dssp             TTCEEEEESC--SHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHH----HTCS---EEEETTTSCHHHHHHHHT--TS
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHH----cCCC---EEecCCccCHHHHHHHhc--CC
Confidence            5789999976  4555543   3 36887899999999886 76643    5643   233322122222211111  23


Q ss_pred             CeeEEEEcC
Q 022298          231 PFDYMSVTP  239 (299)
Q Consensus       231 ~fDlI~iDP  239 (299)
                      .+|+||-.-
T Consensus       258 g~D~vid~~  266 (371)
T 1f8f_A          258 GVNFALEST  266 (371)
T ss_dssp             CEEEEEECS
T ss_pred             CCcEEEECC
Confidence            799987543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=86.14  E-value=0.56  Score=43.79  Aligned_cols=81  Identities=11%  Similarity=-0.018  Sum_probs=48.5

Q ss_pred             HHHHHHHHhcCCCCCCCCCCEEEEECC------ccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 022298          138 GAAFDILQSAGGCPASLRPGRWLDLYS------GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (299)
Q Consensus       138 ealfn~L~~~~~~~~~~~~~~VLDLfa------GSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi  211 (299)
                      ..+++.|+.-.-  ..-.+.+||||||      -.|+.-+.-+......|+++|+++-..            ..+  .++
T Consensus        94 tqlcqyl~~~~~--~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s------------da~--~~I  157 (344)
T 3r24_A           94 TQLCQYLNTLTL--AVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS------------DAD--STL  157 (344)
T ss_dssp             HHHHHHHTTSCC--CCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC------------SSS--EEE
T ss_pred             HHHHHHhccccE--eecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc------------CCC--eEE
Confidence            357777744210  0125889999998      456643222211112799999998541            112  348


Q ss_pred             EcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          212 TVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       212 ~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      ++|..+..        ...+||+|+.|.--+
T Consensus       158 qGD~~~~~--------~~~k~DLVISDMAPN  180 (344)
T 3r24_A          158 IGDCATVH--------TANKWDLIISDMYDP  180 (344)
T ss_dssp             ESCGGGEE--------ESSCEEEEEECCCCT
T ss_pred             Eccccccc--------cCCCCCEEEecCCCC
Confidence            99975532        247899999997433

>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*

Probab=85.09  E-value=0.44  Score=43.28  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=25.6

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHH
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV  191 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al  191 (299)
                      ..+.+|+|+|+|++++...   ..+++..|+|++.+
T Consensus        28 ~~~yvEpF~Ggg~V~~~~~---~~~~i~ND~n~~li   60 (278)
T 2g1p_A           28 GECLVEPFVGAGSVFLNTD---FSRYILADINSDLI   60 (278)
T ss_dssp             CSEEEETTCTTCHHHHTCC---CSEEEEEESCHHHH
T ss_pred             cCeEEeeccCccHHHHhhc---ccceEEEeccHHHH
Confidence            4689999999999987542   35788999998753

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=84.51  E-value=6.4  Score=35.58  Aligned_cols=85  Identities=15%  Similarity=0.159  Sum_probs=54.6

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~  226 (299)
                      +.+.++|=-||+ |.+|.+    ++.+|+ +|++++.+...+ +.+.+.++..+...++.++.+|+.+...-   .....
T Consensus         6 l~~k~vlVTGas-~gIG~~la~~l~~~G~-~Vv~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            6 FAGRTAFVTGGA-NGVGIGLVRQLLNQGC-KVAIADIRQDSI-DKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE   82 (319)
T ss_dssp             CTTCEEEEETTT-STHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEcCCc-hHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            456778877665 445544    446787 599999999887 77777776665433578888887653211   11111


Q ss_pred             CCCCCeeEEEEcCCC
Q 022298          227 GKDGPFDYMSVTPPY  241 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY  241 (299)
                      ...+..|+++.+.-+
T Consensus        83 ~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           83 ARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHTCCEEEEEECCCC
T ss_pred             HhCCCCCEEEECCCc
Confidence            123578999988743

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=84.40  E-value=3.4  Score=36.87  Aligned_cols=84  Identities=13%  Similarity=0.055  Sum_probs=53.9

Q ss_pred             CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcC
Q 022298          154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVG  227 (299)
Q Consensus       154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~  227 (299)
                      ++++++|=-|+++|   +++..++..|+ +|+.+|.+.+.+ +-+.+.++..+.  ++..+++|+.+...-   ......
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~-~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~   82 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLL-AESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDA   82 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHH-HHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHH
Confidence            57888887776665   23334456788 599999999887 666666666653  467778887543211   111122


Q ss_pred             CCCCeeEEEEcCCC
Q 022298          228 KDGPFDYMSVTPPY  241 (299)
Q Consensus       228 ~~~~fDlI~iDPPY  241 (299)
                      ..++.|+++-|--.
T Consensus        83 ~~G~iDiLVNNAG~   96 (255)
T 4g81_D           83 EGIHVDILINNAGI   96 (255)
T ss_dssp             TTCCCCEEEECCCC
T ss_pred             HCCCCcEEEECCCC
Confidence            34689999987643

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=84.16  E-value=5.6  Score=34.69  Aligned_cols=84  Identities=15%  Similarity=0.014  Sum_probs=52.3

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      +.++++|=-|+ +|.+|.+    ++.+|+ +|+.++.+...+ +.+.+.+...+....+..+.+|+.+... ...+....
T Consensus         8 l~~k~~lVTGa-s~gIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~   83 (267)
T 3t4x_A            8 LKGKTALVTGS-TAGIGKAIATSLVAEGA-NVLINGRREENV-NETIKEIRAQYPDAILQPVVADLGTEQG-CQDVIEKY   83 (267)
T ss_dssp             CTTCEEEETTC-SSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHHHHHHCTTCEEEEEECCTTSHHH-HHHHHHHC
T ss_pred             cCCCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhhCCCceEEEEecCCCCHHH-HHHHHHhc
Confidence            45677775554 5556654    345787 699999999886 6666666655433456778888764321 11111123


Q ss_pred             CCeeEEEEcCCC
Q 022298          230 GPFDYMSVTPPY  241 (299)
Q Consensus       230 ~~fDlI~iDPPY  241 (299)
                      ++.|+++.+.-.
T Consensus        84 g~id~lv~nAg~   95 (267)
T 3t4x_A           84 PKVDILINNLGI   95 (267)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            578999987643

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=83.54  E-value=5.3  Score=34.64  Aligned_cols=82  Identities=13%  Similarity=0.075  Sum_probs=53.4

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~  226 (299)
                      ..++++|=-|+++ .+|.+    ++.+|+ +|+.++.+...+ +.+.+.++..+  .++.++.+|+.+...-   .....
T Consensus         5 ~~~k~vlVTGas~-GIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   79 (252)
T 3h7a_A            5 PRNATVAVIGAGD-YIGAEIAKKFAAEGF-TVFAGRRNGEKL-APLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAAD   79 (252)
T ss_dssp             CCSCEEEEECCSS-HHHHHHHHHHHHTTC-EEEEEESSGGGG-HHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHH
Confidence            4567777666654 45544    446787 699999999887 77777776654  3578888887643211   11111


Q ss_pred             CCCCCeeEEEEcCCC
Q 022298          227 GKDGPFDYMSVTPPY  241 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY  241 (299)
                      .. ++.|+++.+.-.
T Consensus        80 ~~-g~id~lv~nAg~   93 (252)
T 3h7a_A           80 AH-APLEVTIFNVGA   93 (252)
T ss_dssp             HH-SCEEEEEECCCC
T ss_pred             hh-CCceEEEECCCc
Confidence            22 579999987654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=83.40  E-value=5.4  Score=34.55  Aligned_cols=86  Identities=19%  Similarity=0.142  Sum_probs=52.4

Q ss_pred             CCCCEEEEECC-ccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298          154 LRPGRWLDLYS-GTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfa-GSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~  226 (299)
                      +.++++|=.|+ |+|   .+...++.+|+ +|+.++.+...+ +.+.+.++..+. .++.++.+|+.+...-   .....
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~   96 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRL-GETRDQLADLGL-GRVEAVVCDVTSTEAVDALITQTV   96 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTTCS-SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHH-HHHHHHHHhcCC-CceEEEEeCCCCHHHHHHHHHHHH
Confidence            45777777665 443   23333456787 599999999886 666666654432 3588899987643211   11011


Q ss_pred             CCCCCeeEEEEcCCCC
Q 022298          227 GKDGPFDYMSVTPPYT  242 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY~  242 (299)
                      ...++.|+++.+.-+.
T Consensus        97 ~~~g~id~li~~Ag~~  112 (266)
T 3o38_A           97 EKAGRLDVLVNNAGLG  112 (266)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHhCCCcEEEECCCcC
Confidence            1124789999887543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=82.91  E-value=7.5  Score=35.52  Aligned_cols=73  Identities=10%  Similarity=0.067  Sum_probs=43.7

Q ss_pred             CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc---hhhHHHHHhhhcC
Q 022298          155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR---VETFLERAEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D---~~~~l~~~~~~~~  227 (299)
                      .+.+||-.||  |.+|+.++    .+|+.+|+++|.+++.. +.++    .+|..   .++..+   ..++........ 
T Consensus       171 ~g~~VlV~Ga--G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~----~lGa~---~vi~~~~~~~~~~~~~i~~~~-  239 (356)
T 1pl8_A          171 LGHKVLVCGA--GPIGMVTLLVAKAMGAAQVVVTDLSATRL-SKAK----EIGAD---LVLQISKESPQEIARKVEGQL-  239 (356)
T ss_dssp             TTCEEEEECC--SHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHH----HTTCS---EEEECSSCCHHHHHHHHHHHH-
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHH----HhCCC---EEEcCcccccchHHHHHHHHh-
Confidence            5789999876  55665543    36887899999999876 6664    35653   233332   233332221111 


Q ss_pred             CCCCeeEEEEcC
Q 022298          228 KDGPFDYMSVTP  239 (299)
Q Consensus       228 ~~~~fDlI~iDP  239 (299)
                       ...+|+||-.-
T Consensus       240 -~~g~D~vid~~  250 (356)
T 1pl8_A          240 -GCKPEVTIECT  250 (356)
T ss_dssp             -TSCCSEEEECS
T ss_pred             -CCCCCEEEECC
Confidence             14689987544

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=82.29  E-value=11  Score=31.93  Aligned_cols=84  Identities=13%  Similarity=0.082  Sum_probs=53.1

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~  226 (299)
                      +.++++|=-| |+|.+|.+    ++++|+ +|+.++.++... +.+.+.++..+.  ++.++.+|+.+...-   .....
T Consensus         3 l~~k~vlITG-as~gIG~~~a~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~   77 (247)
T 3lyl_A            3 LNEKVALVTG-ASRGIGFEVAHALASKGA-TVVGTATSQASA-EKFENSMKEKGF--KARGLVLNISDIESIQNFFAEIK   77 (247)
T ss_dssp             TTTCEEEESS-CSSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEC-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHH
Confidence            3466676555 55666654    345787 699999999886 666666666553  477888887643211   11111


Q ss_pred             CCCCCeeEEEEcCCCC
Q 022298          227 GKDGPFDYMSVTPPYT  242 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY~  242 (299)
                      ...++.|+++.+.-+.
T Consensus        78 ~~~~~id~li~~Ag~~   93 (247)
T 3lyl_A           78 AENLAIDILVNNAGIT   93 (247)
T ss_dssp             HTTCCCSEEEECCCCC
T ss_pred             HHcCCCCEEEECCCCC
Confidence            2345789999887543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=82.29  E-value=8.8  Score=33.37  Aligned_cols=85  Identities=13%  Similarity=-0.010  Sum_probs=52.7

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHH-hCCCCcEEEEEcchhhHHHHH---hhh
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFLERA---EQF  225 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~-~g~~~~~~vi~~D~~~~l~~~---~~~  225 (299)
                      +.++++|=-|+++ .+|.+    ++.+|+ +|+.++.+...+ +.+.+.++. .+- .++.++.+|+.+...-.   ...
T Consensus         6 l~~k~~lVTGas~-GIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~   81 (265)
T 3lf2_A            6 LSEAVAVVTGGSS-GIGLATVELLLEAGA-AVAFCARDGERL-RAAESALRQRFPG-ARLFASVCDVLDALQVRAFAEAC   81 (265)
T ss_dssp             CTTCEEEEETCSS-HHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHSTT-CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhcCC-ceEEEEeCCCCCHHHHHHHHHHH
Confidence            5677888776654 45544    445787 599999999887 666666655 332 23778888876532110   001


Q ss_pred             cCCCCCeeEEEEcCCCC
Q 022298          226 VGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~  242 (299)
                      ....++.|+++.+.-+.
T Consensus        82 ~~~~g~id~lvnnAg~~   98 (265)
T 3lf2_A           82 ERTLGCASILVNNAGQG   98 (265)
T ss_dssp             HHHHCSCSEEEECCCCC
T ss_pred             HHHcCCCCEEEECCCCC
Confidence            11125789999887543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=82.23  E-value=10  Score=32.98  Aligned_cols=81  Identities=10%  Similarity=0.039  Sum_probs=52.7

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~  226 (299)
                      +.++++|=-|+++| +|.+    ++.+|+ +|+.++.+.+.+ +.+.+.++..+  .++.++.+|+.+...-   .....
T Consensus         9 l~~k~vlVTGas~g-IG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   83 (264)
T 3ucx_A            9 LTDKVVVISGVGPA-LGTTLARRCAEQGA-DLVLAARTVERL-EDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETM   83 (264)
T ss_dssp             TTTCEEEEESCCTT-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcH-HHHHHHHHHHHCcC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            45778887776554 4543    456787 599999999887 77777776654  3477888887654211   11111


Q ss_pred             CCCCCeeEEEEcC
Q 022298          227 GKDGPFDYMSVTP  239 (299)
Q Consensus       227 ~~~~~fDlI~iDP  239 (299)
                      ...++.|+++.+.
T Consensus        84 ~~~g~id~lv~nA   96 (264)
T 3ucx_A           84 KAYGRVDVVINNA   96 (264)
T ss_dssp             HHTSCCSEEEECC
T ss_pred             HHcCCCcEEEECC
Confidence            1235789999886

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=81.66  E-value=2.1  Score=39.15  Aligned_cols=72  Identities=13%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+||=.||  |.+|+.++    .+|+.+|+++|.+++.. +.+++    +|..   .++..+-.++......+. .+.
T Consensus       166 ~g~~VlV~Ga--G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~~----lGa~---~vi~~~~~~~~~~v~~~t-~g~  234 (352)
T 3fpc_A          166 LGDTVCVIGI--GPVGLMSVAGANHLGAGRIFAVGSRKHCC-DIALE----YGAT---DIINYKNGDIVEQILKAT-DGK  234 (352)
T ss_dssp             TTCCEEEECC--SHHHHHHHHHHHTTTCSSEEEECCCHHHH-HHHHH----HTCC---EEECGGGSCHHHHHHHHT-TTC
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHH----hCCc---eEEcCCCcCHHHHHHHHc-CCC
Confidence            5788888865  66666544    25887799999999876 66644    5653   233322222222221111 234


Q ss_pred             CeeEEEE
Q 022298          231 PFDYMSV  237 (299)
Q Consensus       231 ~fDlI~i  237 (299)
                      .+|+||-
T Consensus       235 g~D~v~d  241 (352)
T 3fpc_A          235 GVDKVVI  241 (352)
T ss_dssp             CEEEEEE
T ss_pred             CCCEEEE
Confidence            6999874

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=81.56  E-value=7.2  Score=34.21  Aligned_cols=84  Identities=14%  Similarity=0.142  Sum_probs=52.9

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHH---Hhhh
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLER---AEQF  225 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~---~~~~  225 (299)
                      +.++++|=-|++ |.+|.+    ++.+|+ +|+.++.++..+ +.+.+.++..+.. .++.++.+|+.+...-   ....
T Consensus         9 l~~k~vlVTGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   85 (281)
T 3svt_A            9 FQDRTYLVTGGG-SGIGKGVAAGLVAAGA-SVMIVGRNPDKL-AGAVQELEALGANGGAIRYEPTDITNEDETARAVDAV   85 (281)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence            467788877664 455544    446787 699999999887 6676777665432 2577888887643211   1101


Q ss_pred             cCCCCCeeEEEEcCC
Q 022298          226 VGKDGPFDYMSVTPP  240 (299)
Q Consensus       226 ~~~~~~fDlI~iDPP  240 (299)
                      ....++.|+++.+.-
T Consensus        86 ~~~~g~id~lv~nAg  100 (281)
T 3svt_A           86 TAWHGRLHGVVHCAG  100 (281)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence            111247899998764

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=81.55  E-value=7  Score=33.89  Aligned_cols=83  Identities=10%  Similarity=0.040  Sum_probs=52.2

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~  226 (299)
                      +.++++|=-|++ |.+|.+    ++.+|+ +|+.++.+.+.+ +.+.+.++..+  .++.++.+|+.+...-.   ....
T Consensus        10 l~~k~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~   84 (256)
T 3gaf_A           10 LNDAVAIVTGAA-AGIGRAIAGTFAKAGA-SVVVTDLKSEGA-EAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAAL   84 (256)
T ss_dssp             CTTCEEEECSCS-SHHHHHHHHHHHHHTC-EEEEEESSHHHH-HHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            567777766554 555654    345788 599999999887 67777776655  34778888876532110   0011


Q ss_pred             CCCCCeeEEEEcCCC
Q 022298          227 GKDGPFDYMSVTPPY  241 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY  241 (299)
                      ...++.|+++.+.-.
T Consensus        85 ~~~g~id~lv~nAg~   99 (256)
T 3gaf_A           85 DQFGKITVLVNNAGG   99 (256)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            112478999987643

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=81.43  E-value=7.6  Score=34.66  Aligned_cols=84  Identities=13%  Similarity=0.112  Sum_probs=53.5

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~  226 (299)
                      +.++++|=-||+ |.+|.+    ++++|+ +|+.++.+...+ +.+.+.++..+.  ++.++.+|+.+...-.   ....
T Consensus        29 l~gk~vlVTGas-~gIG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~  103 (301)
T 3tjr_A           29 FDGRAAVVTGGA-SGIGLATATEFARRGA-RLVLSDVDQPAL-EQAVNGLRGQGF--DAHGVVCDVRHLDEMVRLADEAF  103 (301)
T ss_dssp             STTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHH
Confidence            457788866665 455654    446787 699999999887 677666665543  4778888876542111   1011


Q ss_pred             CCCCCeeEEEEcCCCC
Q 022298          227 GKDGPFDYMSVTPPYT  242 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY~  242 (299)
                      ...+..|+++.+.-+.
T Consensus       104 ~~~g~id~lvnnAg~~  119 (301)
T 3tjr_A          104 RLLGGVDVVFSNAGIV  119 (301)
T ss_dssp             HHHSSCSEEEECCCCC
T ss_pred             HhCCCCCEEEECCCcC
Confidence            1124789999886543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=81.37  E-value=7.9  Score=33.50  Aligned_cols=85  Identities=8%  Similarity=0.069  Sum_probs=52.2

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHH---hhh
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERA---EQF  225 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~---~~~  225 (299)
                      ..++++|=-|++ |.+|.+    ++.+|+ +|+.++.+...+ +.+.+.+...... .++.++.+|+.+...-.   ...
T Consensus         5 ~~~k~~lVTGas-~GIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   81 (250)
T 3nyw_A            5 KQKGLAIITGAS-QGIGAVIAAGLATDGY-RVVLIARSKQNL-EKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDI   81 (250)
T ss_dssp             CCCCEEEEESTT-SHHHHHHHHHHHHHTC-EEEEEESCHHHH-HHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHH
Confidence            456777766655 455554    345788 699999999887 6666666554222 34678888876532111   101


Q ss_pred             cCCCCCeeEEEEcCCC
Q 022298          226 VGKDGPFDYMSVTPPY  241 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY  241 (299)
                      ....++.|+++.+.-.
T Consensus        82 ~~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           82 HQKYGAVDILVNAAAM   97 (250)
T ss_dssp             HHHHCCEEEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence            1112579999987654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=81.29  E-value=9  Score=32.76  Aligned_cols=83  Identities=13%  Similarity=0.148  Sum_probs=52.6

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~  226 (299)
                      +.++++|=-|+ +|.+|.+    ++.+|+ +|+.++.+.+.+ +.+.+.++..+  .++.++.+|+.+...-.   ....
T Consensus         7 ~~~k~vlITGa-s~giG~~~a~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T 3qiv_A            7 FENKVGIVTGS-GGGIGQAYAEALAREGA-AVVVADINAEAA-EAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTL   81 (253)
T ss_dssp             TTTCEEEEETT-TSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence            45777876665 5555654    345787 599999999887 67767666554  35778888876542111   0011


Q ss_pred             CCCCCeeEEEEcCCC
Q 022298          227 GKDGPFDYMSVTPPY  241 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY  241 (299)
                      ...+..|+++.+.-.
T Consensus        82 ~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           82 AEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence            112478999988643

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=80.75  E-value=1.9  Score=40.00  Aligned_cols=44  Identities=14%  Similarity=0.083  Sum_probs=32.2

Q ss_pred             CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~  205 (299)
                      .+.+||=.||  |.+|+.++    .+|+.+|+++|.+++.. +.+++    +|..
T Consensus       182 ~g~~VlV~Ga--G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~  229 (370)
T 4ej6_A          182 AGSTVAILGG--GVIGLLTVQLARLAGATTVILSTRQATKR-RLAEE----VGAT  229 (370)
T ss_dssp             TTCEEEEECC--SHHHHHHHHHHHHTTCSEEEEECSCHHHH-HHHHH----HTCS
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHH----cCCC
Confidence            5788988876  56666544    36988899999999886 66654    5653

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=80.72  E-value=6.7  Score=34.24  Aligned_cols=87  Identities=15%  Similarity=0.042  Sum_probs=55.3

Q ss_pred             CCCCCEEEEECCcc--c---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhh
Q 022298          153 SLRPGRWLDLYSGT--G---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQ  224 (299)
Q Consensus       153 ~~~~~~VLDLfaGS--G---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~  224 (299)
                      +++++++|=-||++  |   +++..++..|+ +|+.++.+.+.+ +-+.+-++..+-. ++.++++|+.+...-   ...
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~-~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSR-KELEKLLEQLNQP-EAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGH-HHHHHHHGGGTCS-SCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCC-cEEEEEccCCCHHHHHHHHHH
Confidence            36789999888644  3   33444556798 599999998887 6777666665532 467788887543211   011


Q ss_pred             hcCCCCCeeEEEEcCCCC
Q 022298          225 FVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       225 ~~~~~~~fDlI~iDPPY~  242 (299)
                      .....++.|+++.|--+.
T Consensus        80 ~~~~~G~iD~lvnnAg~~   97 (256)
T 4fs3_A           80 IGKDVGNIDGVYHSIAFA   97 (256)
T ss_dssp             HHHHHCCCSEEEECCCCC
T ss_pred             HHHHhCCCCEEEeccccc
Confidence            111236789999876543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=80.71  E-value=6.5  Score=35.41  Aligned_cols=80  Identities=15%  Similarity=0.084  Sum_probs=49.6

Q ss_pred             CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhcC
Q 022298          154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFVG  227 (299)
Q Consensus       154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~~  227 (299)
                      ++++.+|=-|+++|   +++..++..|+ +|+.+|.+.+.+ +-+.   +.++-  ++..+++|+.+...-.   .....
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l-~~~~---~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~   99 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVL-DAAI---AEIGG--GAVGIQADSANLAELDRLYEKVKA   99 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHH---HHHCT--TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHH---HHcCC--CeEEEEecCCCHHHHHHHHHHHHH
Confidence            57888888888776   33344456788 699999999876 5443   33442  3567788875432110   11111


Q ss_pred             CCCCeeEEEEcCC
Q 022298          228 KDGPFDYMSVTPP  240 (299)
Q Consensus       228 ~~~~fDlI~iDPP  240 (299)
                      ..++.|+++.|--
T Consensus       100 ~~G~iDiLVNNAG  112 (273)
T 4fgs_A          100 EAGRIDVLFVNAG  112 (273)
T ss_dssp             HHSCEEEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            2367999998763

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=80.38  E-value=4.5  Score=36.70  Aligned_cols=73  Identities=18%  Similarity=0.050  Sum_probs=42.3

Q ss_pred             CCCEEEEECCcc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGS-GalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+.+||-.|||. |.+.+.++. +|+ +|+++|.+++.. +.+++    +|..   .++..+-.++......   ..+.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~-~~~~~----lGa~---~~i~~~~~~~~~~~~~---~~g~~  233 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKL-NLARR----LGAE---VAVNARDTDPAAWLQK---EIGGA  233 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHH----TTCS---EEEETTTSCHHHHHHH---HHSSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHH----cCCC---EEEeCCCcCHHHHHHH---hCCCC
Confidence            578898887643 444444443 688 799999999886 66543    6653   2333221222222111   02478


Q ss_pred             eEEEEcC
Q 022298          233 DYMSVTP  239 (299)
Q Consensus       233 DlI~iDP  239 (299)
                      |+||-+-
T Consensus       234 d~vid~~  240 (340)
T 3s2e_A          234 HGVLVTA  240 (340)
T ss_dssp             EEEEESS
T ss_pred             CEEEEeC
Confidence            9988664

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=80.09  E-value=6.6  Score=34.70  Aligned_cols=83  Identities=12%  Similarity=0.106  Sum_probs=49.7

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeC-CHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H-Hhhh
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEM-DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQF  225 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~-n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~-~~~~  225 (299)
                      ..++++|=-|+++ .+|.+    ++.+|+ +|+.++. +.+.+ +.+.+.++..+  .++.++.+|+.+...  . ....
T Consensus        27 ~~~k~~lVTGas~-GIG~aia~~la~~G~-~V~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~  101 (280)
T 4da9_A           27 KARPVAIVTGGRR-GIGLGIARALAASGF-DIAITGIGDAEGV-APVIAELSGLG--ARVIFLRADLADLSSHQATVDAV  101 (280)
T ss_dssp             CCCCEEEEETTTS-HHHHHHHHHHHHTTC-EEEEEESCCHHHH-HHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHH
T ss_pred             cCCCEEEEecCCC-HHHHHHHHHHHHCCC-eEEEEeCCCHHHH-HHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            4567777666554 45544    446787 5999995 77765 66666666554  347888888764321  1 1101


Q ss_pred             cCCCCCeeEEEEcCCC
Q 022298          226 VGKDGPFDYMSVTPPY  241 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY  241 (299)
                      ....++.|+++.+.-.
T Consensus       102 ~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A          102 VAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             HHHHSCCCEEEEECC-
T ss_pred             HHHcCCCCEEEECCCc
Confidence            1112478999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	299
d2ifta1	183	c.66.1.46 (A:11-193) Putative methylase HI0767 {Ha	1e-17
d2fhpa1	182	c.66.1.46 (A:1-182) Putative methylase EF2452 {Ent	5e-17
d2fpoa1	183	c.66.1.46 (A:10-192) Methylase YhhF {Escherichia c	2e-16
d2esra1	152	c.66.1.46 (A:28-179) Putative methyltransferase SP	6e-12
d1ws6a1	171	c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {T	3e-10
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	4e-08
d1wy7a1	201	c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A	3e-04
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	0.004

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} Length = 183

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

 Score = 76.8 bits (188), Expect = 1e-17
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 29/190 (15%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++ G  R +KL       +RP  + VK   F+ L         +     LD ++G+GS
Sbjct: 3   VRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMP------YIHQSECLDGFAGSGS 56

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
           +G EA+SR   +V F+E+D  V + +             SS     +        +    
Sbjct: 57  LGFEALSRQAKKVTFLELDKTVANQLKKNLQTL----KCSSEQAEVINQSSLDFLKQPQN 112

Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
              FD + + PP+     E                   VE      ++        +K++
Sbjct: 113 QPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDKPLITPEN-WTLLKEK 171

Query: 271 RFGRTHLAIY 280
             G     +Y
Sbjct: 172 TTGIVSYRLY 181

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} Length = 182

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

 Score = 75.3 bits (184), Expect = 5e-17
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 28/190 (14%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++V+ G+   ++L +  G + RP  + VK + F+++            G  LDLYSG+G 
Sbjct: 1   MRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGP------YFDGGMALDLYSGSGG 54

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
           + IEA+SRG  +   +E +   +  +                  VR        EQF  +
Sbjct: 55  LAIEAVSRGMDKSICIEKNFAALKVIKENIAIT----KEPEKFEVRKMDANRALEQFYEE 110

Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
              FD + + PPY   +                    V E      + +T G L K ++ 
Sbjct: 111 KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLPETIGTLKKTRET 170

Query: 271 RFGRTHLAIY 280
            +G T + IY
Sbjct: 171 VYGITQVTIY 180

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

 Score = 73.8 bits (180), Expect = 2e-16
 Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 39/202 (19%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P    +RP  + V+   F+           +   + LD ++G+G+
Sbjct: 3   IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNW------LAPVIVDAQCLDCFAGSGA 56

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
           +G+EA+SR  +    +EMD  V   ++                                K
Sbjct: 57  LGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAM--------SFLAQK 108

Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
             P + + V PP+     E                   VE  +   +          +++
Sbjct: 109 GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREK 168

Query: 271 RFGRTHLAIYGPDWAQKKRKSE 292
             G+    +Y       +R+++
Sbjct: 169 VAGQVAYRLY-------QREAQ 183

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 60.3 bits (145), Expect = 6e-12
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 31/163 (19%)

Query: 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 195
           V+GA F+++            GR LDL++G+G + IEA+SRG S    VE +    + + 
Sbjct: 1   VRGAIFNMIGP------YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQ 54

Query: 196 IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE-------- 247
              +                   +E         G FD + + PPY              
Sbjct: 55  DNIIMTK-------AENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAA 107

Query: 248 ----------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 280
                     V E      +      L   K++ +G + + +Y
Sbjct: 108 KNLLSEQVMVVCETDKTVLLPKEIATLGIWKEKIYGISKVTVY 150

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

 Score = 56.0 bits (134), Expect = 3e-10
 Identities = 40/183 (21%), Positives = 65/183 (35%), Gaps = 24/183 (13%)

Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
           ++++LGGKAR   L  P     RP    ++ A FD L+         R GR+LD ++G+G
Sbjct: 1   VVRILGGKARGVALKVPAS--ARPSPVRLRKALFDYLR-----LRYPRRGRFLDPFAGSG 53

Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
           +VG+EA S G   V   +    V                      V          +   
Sbjct: 54  AVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL-------GARVVALPVEVFLPEAKA 106

Query: 228 KDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLV----------KIKDRRFGRTHL 277
           +   F    + PPY      +    L + +++  G  V            + R +G   L
Sbjct: 107 QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYLPLGERRVYGENAL 166

Query: 278 AIY 280
            + 
Sbjct: 167 TLV 169

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 51.3 bits (122), Expect = 4e-08
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 4/102 (3%)

Query: 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214
           RP + L+L+  TG   + A + G      V+     +      N    G           
Sbjct: 132 RPLKVLNLFGYTGVASLVAAAAGAEVT-HVDASKKAIG-WAKENQVLAGLEQAP--IRWI 187

Query: 215 VETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTD 256
            E  ++  ++   +   +D +   PP          + L   
Sbjct: 188 CEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDH 229

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 13/131 (9%)

Query: 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213
           +      DL +GTG +   A+  G  EV  VE+D   V +VLI NL              
Sbjct: 45  IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFK---------G 94

Query: 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFG 273
           + + F+    +F  +    D + + PP+ +         L      +         +   
Sbjct: 95  KFKVFIGDVSEFNSR---VDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEV 151

Query: 274 RTHLAIYGPDW 284
           R  +  +  + 
Sbjct: 152 RRFIEKFSWEH 162

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205
             +D  +G G +   +   G   V   ++DP  +      N     F+
Sbjct: 51  SVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-ETAKRNCGGVNFM 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	100.0
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	100.0
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	100.0
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	100.0
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.97
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.75
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.74
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.7
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.7
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.66
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.64
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.62
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.62
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.61
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.55
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.53
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.47
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.46
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.43
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.35
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.15
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.14
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.11
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.1
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.07
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	99.03
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.01
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.01
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.99
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.98
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.95
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.94
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.93
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.93
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.91
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.9
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.89
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.89
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.86
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.86
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.83
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.82
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.8
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.75
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.74
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	98.72
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.71
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.67
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.64
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.64
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.63
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.62
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.59
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.58
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.58
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.57
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.57
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.57
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.54
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.53
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.5
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.47
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.46
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.46
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.45
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.44
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.42
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.41
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.41
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.39
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.38
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.36
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.35
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.34
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.32
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.29
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.29
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.27
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.26
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.19
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.13
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.13
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.1
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.07
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.06
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.04
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.02
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.98
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.97
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.92
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.88
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.83
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.8
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.71
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.68
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.68
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.62
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.58
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.49
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.45
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.36
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.13
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	95.99
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	95.43
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	95.34
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	95.21
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.78
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.09
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.59
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.31
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.74
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	92.59
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.25
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.17
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.54
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.13
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	89.72
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	89.52
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	89.38
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	88.88
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	88.73
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	88.52
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	88.22
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	87.72
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	87.6
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	87.28
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	87.26
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	87.23
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	86.69
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.32
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	85.77
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	85.54
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	85.44
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	85.42
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.13
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.08
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	84.94
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	83.79
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	83.63
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	83.24
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	83.2
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	82.95
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	82.75
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	81.72
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	81.52
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	81.43
d2dpma_	275	DNA methylase DpnM {Streptococcus pneumoniae [TaxI	81.41
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	80.45
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	80.36
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	80.19

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=4.1e-42  Score=298.55  Aligned_cols=163  Identities=27%  Similarity=0.435  Sum_probs=147.7

Q ss_pred             EEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCH
Q 022298          109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP  188 (299)
Q Consensus       109 mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~  188 (299)
                      ||||+|+|+|++|..|++..+|||+++|||++||+|...      .++.+|||||||||++|+||+||||.+|++||.|+
T Consensus         1 mrIi~G~~kg~~l~~~~~~~~RPt~~~vrealFn~l~~~------~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~   74 (182)
T d2fhpa1           1 MRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPY------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNF   74 (182)
T ss_dssp             CBCCSSTTTTCBCCCCCCCSSCCCCHHHHHHHHHHHCSC------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEeccccCCCEecCCCCCCcCcCcHHHHHHHHHHHHHh------cCCCEEEEcccccccccceeeecchhHHHHHHHHH
Confidence            799999999999999999999999999999999999763      57999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCe------------------EEEE
Q 022298          189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY------------------EVVE  250 (299)
Q Consensus       189 ~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~------------------~~vE  250 (299)
                      .++ +.+++|++.++..++++++++|+.+++....   ....+||+||+||||....+                  .++|
T Consensus        75 ~a~-~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~---~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1          75 AAL-KVIKENIAITKEPEKFEVRKMDANRALEQFY---EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHHH---HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             HHH-HHHHHHhhhhhcccccccccccchhhhhhhc---ccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            998 9999999999988889999999999987642   23468999999999986542                  2399


Q ss_pred             ecCCCCCCCCCCCeEEEEEeeecceEEEEee
Q 022298          251 YPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG  281 (299)
Q Consensus       251 ~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~  281 (299)
                      |+.+.++++....|+++++|+||+|.++||+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~k~YG~t~l~~~r  181 (182)
T d2fhpa1         151 TDKTVKLPETIGTLKKTRETVYGITQVTIYR  181 (182)
T ss_dssp             EETTCCCCSEETTEEEEEEEEETTEEEEEEE
T ss_pred             cCCCCCCccCCCceEEEEEEeeCCEEEEEEe
Confidence            9998888877788999999999999999996

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8e-42  Score=296.47  Aligned_cols=163  Identities=25%  Similarity=0.410  Sum_probs=140.5

Q ss_pred             ceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeC
Q 022298          107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM  186 (299)
Q Consensus       107 ~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~  186 (299)
                      +-||||+|+|+|++|.+|++..+|||+++|||++||+|...      +++.+|||||||||++|+||+||||.+|++||+
T Consensus         1 ~~mrIi~G~~kg~~l~~~~~~~~RPt~~~vre~lfn~l~~~------~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~   74 (183)
T d2fpoa1           1 GQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGALGLEALSRYAAGATLIEM   74 (183)
T ss_dssp             CEEECCSGGGTTCEEECCCC------CHHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECS
T ss_pred             CCeEEEecccCCCEecCCCCCCcCcCcHHHHHHHHhhhhcc------cchhhhhhhhccccceeeeEEecCcceeEEEEE
Confidence            46899999999999999999899999999999999999874      578999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCeE------------------E
Q 022298          187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE------------------V  248 (299)
Q Consensus       187 n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~~------------------~  248 (299)
                      |+.++ +.+++|++.++..+ ++++++|+.+++..      ...+||+||+||||....+.                  +
T Consensus        75 ~~~a~-~~~k~N~~~~~~~~-~~ii~~d~~~~l~~------~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIi  146 (183)
T d2fpoa1          75 DRAVS-QQLIKNLATLKAGN-ARVVNSNAMSFLAQ------KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIY  146 (183)
T ss_dssp             CHHHH-HHHHHHHHHTTCCS-EEEECSCHHHHHSS------CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred             eechh-hHHHHHHhhccccc-eeeeeecccccccc------cccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEE
Confidence            99998 99999999988755 78999999988742      35789999999999975431                  3


Q ss_pred             EEecCCCCCCCCCCCeEEEEEeeecceEEEEeecc
Q 022298          249 VEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPD  283 (299)
Q Consensus       249 vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~~~  283 (299)
                      +||+.+.+++....+|+++++|+||+|.++||+..
T Consensus       147 iE~~~~~~~~~~~~~~~i~k~k~yG~t~i~~~~k~  181 (183)
T d2fpoa1         147 VESEVENGLPTVPANWSLHREKVAGQVAYRLYQRE  181 (183)
T ss_dssp             EEEEGGGCSCCCCTTEEEEEEEEETTEEEEEEEEC
T ss_pred             EEecCcCCcccCCCCcEEEEEEEeCcEEEEEEEEc
Confidence            99998887777778899999999999999999743

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=6.4e-42  Score=297.09  Aligned_cols=163  Identities=25%  Similarity=0.348  Sum_probs=133.4

Q ss_pred             ceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeC
Q 022298          107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM  186 (299)
Q Consensus       107 ~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~  186 (299)
                      +-||||+|+|+||+|.+|++..+|||+++|||++||+|+..      +++.+|||||||||++|+||+||||.+|++||.
T Consensus         1 ~~mrIi~G~~kg~~l~~~~~~~~RPt~~~vrealFn~l~~~------~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~   74 (183)
T d2ifta1           1 GEVRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMPY------IHQSECLDGFAGSGSLGFEALSRQAKKVTFLEL   74 (183)
T ss_dssp             CEEECCSSTTTTCEEECC---------CHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECS
T ss_pred             CceEEEccccCCCEecCCCCCCcCcCcHHHHHHHHHHhhhh------cccceEeecccCccceeeeeeeecceeeEEeec
Confidence            35899999999999999999889999999999999999874      578999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCe------------------E
Q 022298          187 DPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY------------------E  247 (299)
Q Consensus       187 n~~Al~~~a~~N~~~~g~~~-~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~------------------~  247 (299)
                      |+.++ +.+++|++.+++.+ ...+++.|+.+++...    ....+||+||+||||....+                  .
T Consensus        75 ~~~a~-~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~----~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~li  149 (183)
T d2ifta1          75 DKTVA-NQLKKNLQTLKCSSEQAEVINQSSLDFLKQP----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALI  149 (183)
T ss_dssp             CHHHH-HHHHHHHHHTTCCTTTEEEECSCHHHHTTSC----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccchh-hhHhhHHhhhccccccccccccccccccccc----ccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEE
Confidence            99998 99999999998864 5678889988876432    22457999999999987432                  2


Q ss_pred             EEEecCCCCCCCCCCCeEEEEEeeecceEEEEee
Q 022298          248 VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG  281 (299)
Q Consensus       248 ~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~  281 (299)
                      ++||+++..+. .+.+|+++++|+||+|.++||+
T Consensus       150 iiE~~~~~~~~-~~~~~~~~k~kkyG~t~i~~~~  182 (183)
T d2ifta1         150 YVETEKDKPLI-TPENWTLLKEKTTGIVSYRLYQ  182 (183)
T ss_dssp             EEEEESSSCCC-CCTTEEEEEEEEETTEEEEEEE
T ss_pred             EEEecCCCCCC-CCCCcEEEEEEecCCEEEEEec
Confidence            39999877654 3467999999999999999997

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.6e-35  Score=254.12  Aligned_cols=153  Identities=33%  Similarity=0.491  Sum_probs=127.6

Q ss_pred             eEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCC
Q 022298          108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD  187 (299)
Q Consensus       108 ~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n  187 (299)
                      |||||+|+|||+++.+|.+  +|||+++|+|++||+|....     .++++|||+|||||++|+||+++|+ +|++||.|
T Consensus         1 ~~ri~~g~~kg~~l~~~~~--~Rpt~~~v~e~lf~~l~~~~-----~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~   72 (171)
T d1ws6a1           1 VVRILGGKARGVALKVPAS--ARPSPVRLRKALFDYLRLRY-----PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKD   72 (171)
T ss_dssp             CEECCSGGGTTCEECCCTT--CCCCCHHHHHHHHHHHHHHC-----TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCC
T ss_pred             CEEEecccccCCEeCCCCC--CCCCcHHHHHHHHHHhhccc-----cCCCeEEEeccccchhhhhhhhccc-hhhhcccC
Confidence            7999999999999999875  79999999999999998752     3688999999999999999999998 68999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCe-----------------EEEE
Q 022298          188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY-----------------EVVE  250 (299)
Q Consensus       188 ~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~-----------------~~vE  250 (299)
                      +.++ +.+++|++.+++.++  +...++..++....   ...++||+||+||||..+..                 .++|
T Consensus        73 ~~a~-~~~~~N~~~~~~~~~--v~~~~~d~~~~~~~---~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1          73 PEAV-RLLKENVRRTGLGAR--VVALPVEVFLPEAK---AQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             HHHH-HHHHHHHHHHTCCCE--EECSCHHHHHHHHH---HTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             HHHH-hhhhHHHHhhccccc--eeeeehhccccccc---ccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            9998 999999999999764  55566655543321   23578999999999987542                 2389


Q ss_pred             ecCCCCCCCCCCCeEEEEEeeecceEEEEee
Q 022298          251 YPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG  281 (299)
Q Consensus       251 ~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~  281 (299)
                      |+++..++       +.++|+||.|.++||+
T Consensus       147 ~~~~~~l~-------l~~~r~YG~t~i~~~~  170 (171)
T d1ws6a1         147 HPKDLYLP-------LGERRVYGENALTLVE  170 (171)
T ss_dssp             EETTSCCT-------TSEEEEETTEEEEEEE
T ss_pred             ecCCCCCC-------cCcEEecCCEEEEEEE
Confidence            98765443       3468999999999996

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.97  E-value=4.8e-32  Score=227.65  Aligned_cols=133  Identities=26%  Similarity=0.424  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022298          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (299)
Q Consensus       136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~  215 (299)
                      |||++||+|+..      +.+++|||+|||||++|+||++|||.+|++||+|+.++ +.+++|++.++..++++++++|+
T Consensus         1 Vre~~fn~l~~~------~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~-~~~~~n~~~~~~~~~~~ii~~D~   73 (152)
T d2esra1           1 VRGAIFNMIGPY------FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNIIMTKAENRFTLLKMEA   73 (152)
T ss_dssp             CHHHHHHHHCSC------CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHHHTTTCGGGEEEECSCH
T ss_pred             CcHHHHHHHHhh------CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhh-hhhhhhhhhcccccchhhhcccc
Confidence            689999999874      67999999999999999999999999999999999998 99999999999998999999999


Q ss_pred             hhHHHHHhhhcCCCCCeeEEEEcCCCCCCC------------------eEEEEecCCCCCCCCCCCeEEEEEeeecceEE
Q 022298          216 ETFLERAEQFVGKDGPFDYMSVTPPYTAVD------------------YEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHL  277 (299)
Q Consensus       216 ~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~------------------~~~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l  277 (299)
                      ..++...      .++||+||+||||....                  ..++||+.+..++.....|.++++|+||+|.+
T Consensus        74 ~~~l~~~------~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~~~~~~~~~~~~i~~~k~yG~t~i  147 (152)
T d2esra1          74 ERAIDCL------TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLLPKEIATLGIWKEKIYGISKV  147 (152)
T ss_dssp             HHHHHHB------CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCCCSEETTEEEEEEEEETTEEE
T ss_pred             ccccccc------ccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCCCCCCcccCCcceEEEEEecCCEEE
Confidence            9987643      47899999999998532                  22489998887777778899999999999999


Q ss_pred             EEee
Q 022298          278 AIYG  281 (299)
Q Consensus       278 ~~y~  281 (299)
                      +||.
T Consensus       148 ~~~~  151 (152)
T d2esra1         148 TVYV  151 (152)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9995

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.6e-18  Score=158.32  Aligned_cols=129  Identities=23%  Similarity=0.230  Sum_probs=106.1

Q ss_pred             cccccccccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHH
Q 022298           98 KSQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI  174 (299)
Q Consensus        98 ~~~~p~~~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl  174 (299)
                      ++...+.....+++|.|+  |+|.++.+.++. .+||.|+.+.+...+....        .+.+|||+|||||++++.++
T Consensus        56 ~~~~rr~~g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~--------~~~~vlDlGtGSG~I~i~la  127 (274)
T d2b3ta1          56 ALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPE--------QPCRILDLGTGTGAIALALA  127 (274)
T ss_dssp             HHHHHHHTTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCS--------SCCEEEEETCTTSHHHHHHH
T ss_pred             HHHHHHhcCcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhhcc--------cccceeeeehhhhHHHHHHH
Confidence            455566667788888885  679999997775 5899999888876665432        46799999999999999877


Q ss_pred             H-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          175 S-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       175 S-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      + ....+|+++|+|+.|+ +++++|++.+++. +++++++|.++.+.        +.+||+|++||||-..
T Consensus       128 ~~~p~~~v~avDis~~Al-~~A~~Na~~~~~~-~v~~~~~d~~~~~~--------~~~fDlIvsNPPYi~~  188 (274)
T d2b3ta1         128 SERPDCEIIAVDRMPDAV-SLAQRNAQHLAIK-NIHILQSDWFSALA--------GQQFAMIVSNPPYIDE  188 (274)
T ss_dssp             HHCTTSEEEEECSSHHHH-HHHHHHHHHHTCC-SEEEECCSTTGGGT--------TCCEEEEEECCCCBCT
T ss_pred             hhCCcceeeeccchhHHH-hHHHHHHHHhCcc-cceeeecccccccC--------CCceeEEEecchhhhh
Confidence            6 4456899999999998 9999999999985 48999999887642        4689999999999753

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=4.8e-18  Score=147.98  Aligned_cols=96  Identities=26%  Similarity=0.267  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 022298          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (299)
Q Consensus       131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~v  210 (299)
                      +|...+...+...+...+    +++|.+|||+|||||+++++|+++|+.+|++||+|+.++ +.+++|++.++..  .++
T Consensus        26 ~Tp~~~a~~~~~~~~~~~----dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~-~~a~~N~~~~~~~--~~~   98 (201)
T d1wy7a1          26 RTPGNAASELLWLAYSLG----DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFKGK--FKV   98 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTT----SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHTGGGTTS--EEE
T ss_pred             CCCHHHHHHHHHHHHhcC----CCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHH-HHHHHHHHHcCCC--ceE
Confidence            566666655554444333    368999999999999999999999999999999999998 9999999998863  678


Q ss_pred             EEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          211 HTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       211 i~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +++|+..+          .++||+||+||||..
T Consensus        99 ~~~d~~~~----------~~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1          99 FIGDVSEF----------NSRVDIVIMNPPFGS  121 (201)
T ss_dssp             EESCGGGC----------CCCCSEEEECCCCSS
T ss_pred             EECchhhh----------CCcCcEEEEcCcccc
Confidence            99998764          478999999999975

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.70  E-value=5.3e-17  Score=141.47  Aligned_cols=93  Identities=16%  Similarity=0.241  Sum_probs=73.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~  209 (299)
                      -+|...++..++..+...+    +++|.+|||+|||||.++++|+++|+.+|++||+|+.++ +.+++|++      ++.
T Consensus        27 y~T~~~~a~~~~~~~~~~~----dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~-~~ar~N~~------~~~   95 (197)
T d1ne2a_          27 YPTDASTAAYFLIEIYNDG----NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-ETAKRNCG------GVN   95 (197)
T ss_dssp             CCCCHHHHHHHHHHHHHHT----SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-HHHHHHCT------TSE
T ss_pred             CCCCHHHHHHHHHHHHHcC----CCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHH-HHHHHccc------ccc
Confidence            4555555555544444433    378999999999999999999999999999999999998 99999963      257


Q ss_pred             EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++++|+.++          .++||+|++||||+.
T Consensus        96 ~~~~D~~~l----------~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          96 FMVADVSEI----------SGKYDTWIMNPPFGS  119 (197)
T ss_dssp             EEECCGGGC----------CCCEEEEEECCCC--
T ss_pred             EEEEehhhc----------CCcceEEEeCcccch
Confidence            899998653          478999999999964

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=2.7e-17  Score=149.83  Aligned_cols=133  Identities=18%  Similarity=0.225  Sum_probs=110.6

Q ss_pred             cccccccccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHH
Q 022298           98 KSQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI  174 (299)
Q Consensus        98 ~~~~p~~~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl  174 (299)
                      ++...+..+..+.+|.|+  |.|..+.+.++. .+||.|+.+.+.+.+.+...       ...+++|+|||||++++.++
T Consensus        57 ~~i~rR~~~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~-------~~~~vld~g~GsG~i~~~la  129 (271)
T d1nv8a_          57 ELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY-------GIKTVADIGTGSGAIGVSVA  129 (271)
T ss_dssp             HHHHHHHTTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH-------TCCEEEEESCTTSHHHHHHH
T ss_pred             HHHHHhhCCCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccc-------cccEEEEeeeeeehhhhhhh
Confidence            344555566677888885  679999987765 58999999999888877653       35689999999999999988


Q ss_pred             HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          175 SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       175 SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      .....+|+++|+|+.|+ +++++|++.+++.+++.++.+|..+....      ..++||+|++||||-..
T Consensus       130 ~~~~~~v~a~Dis~~Al-~~A~~Na~~~~~~~~~~i~~~~~~~~~~~------~~~~fDlIVsNPPYI~~  192 (271)
T d1nv8a_         130 KFSDAIVFATDVSSKAV-EIARKNAERHGVSDRFFVRKGEFLEPFKE------KFASIEMILSNPPYVKS  192 (271)
T ss_dssp             HHSSCEEEEEESCHHHH-HHHHHHHHHTTCTTSEEEEESSTTGGGGG------GTTTCCEEEECCCCBCG
T ss_pred             hcccceeeechhhhhHH-HHHHHHHHHcCCCceeEEeeccccccccc------ccCcccEEEEcccccCc
Confidence            77777899999999998 99999999999998899999998876532      23689999999999863

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.66  E-value=2.8e-16  Score=145.49  Aligned_cols=104  Identities=22%  Similarity=0.249  Sum_probs=87.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC-
Q 022298          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-  206 (299)
Q Consensus       128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~-  206 (299)
                      +..+.....++.+-+.+...      .++.+|||||||||++++.|++.|| +|++||.|+.++ +.+++|++.|++.+ 
T Consensus       111 G~f~dqr~nr~~~~~~~~~~------~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al-~~a~~N~~ln~~~~~  182 (309)
T d2igta1         111 GVFPEQIVHWEWLKNAVETA------DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAI-GWAKENQVLAGLEQA  182 (309)
T ss_dssp             SCCGGGHHHHHHHHHHHHHS------SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHH-HHHHHHHHHHTCTTS
T ss_pred             ccccchhHHHHHHHHHHhhc------cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHH-HHHHHhhhhhcccCC
Confidence            45666667777777766653      3578999999999999999999998 799999999998 99999999999875 


Q ss_pred             cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      +++++++|+++++....   ..+.+||+|++|||+-
T Consensus       183 ~~~~i~~D~~~~l~~~~---~~~~~fD~IilDPP~f  215 (309)
T d2igta1         183 PIRWICEDAMKFIQREE---RRGSTYDIILTDPPKF  215 (309)
T ss_dssp             CEEEECSCHHHHHHHHH---HHTCCBSEEEECCCSE
T ss_pred             cEEEEeCCHHHhHHHHh---hcCCCCCEEEECCCcc
Confidence            58999999999987653   2357899999999954

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.64  E-value=6.3e-16  Score=143.40  Aligned_cols=103  Identities=20%  Similarity=0.188  Sum_probs=86.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      +..+.....++.+-+.+         .++.+|||+|||+|++++.++++|+.+|++||+|+.++ +.+++|++.||+.++
T Consensus       127 G~flDqr~~r~~~~~~~---------~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al-~~a~~N~~~ngl~~~  196 (324)
T d2as0a2         127 GFFLDQRENRLALEKWV---------QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDR  196 (324)
T ss_dssp             CCCSTTHHHHHHHGGGC---------CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGG
T ss_pred             CcccchhhHHHHHHhhc---------CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHH-HHHHHHHHHcCCCcc
Confidence            45666666665553332         24889999999999999999999999999999999998 999999999999888


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++++++|+++++....   ..+.+||+|++|||+..
T Consensus       197 ~~~~~~d~~~~~~~~~---~~~~~fD~Vi~DpP~~~  229 (324)
T d2as0a2         197 MKFIVGSAFEEMEKLQ---KKGEKFDIVVLDPPAFV  229 (324)
T ss_dssp             EEEEESCHHHHHHHHH---HTTCCEEEEEECCCCSC
T ss_pred             ceeeechhhhhhHHHH---hccCCCCchhcCCcccc
Confidence            9999999999886542   23578999999999865

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.62  E-value=2.1e-15  Score=129.21  Aligned_cols=120  Identities=15%  Similarity=0.174  Sum_probs=95.1

Q ss_pred             eEEEEeeeeCCeEEec--CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEe
Q 022298          108 LLQVLGGKARRKKLLS--PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVE  185 (299)
Q Consensus       108 ~mrIi~Gk~~Gr~L~~--p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD  185 (299)
                      -.+++.+.++|+.+..  +.+.+.+...|...+.+.+.+..       ..+.+|||+|||+|.+++.++.++ .+|+++|
T Consensus        10 ~~~~~~~~~~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~-------~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD   81 (194)
T d1dusa_          10 DVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVV-------DKDDDILDLGCGYGVIGIALADEV-KSTTMAD   81 (194)
T ss_dssp             CEEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC-------CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEE
T ss_pred             ceEEEEEEECCeeEEEEcCCCccCCCCcCHHHHHHHHhCCc-------CCCCeEEEEeecCChhHHHHHhhc-cccceee
Confidence            3477899999997654  66655555556556666666643       368899999999999999877665 5799999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          186 MDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       186 ~n~~Al~~~a~~N~~~~g~~~-~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      +|+.++ +.+++|++.+++.+ +++++.+|+.+.+        ..+.||+|++||||...
T Consensus        82 ~s~~~i-~~a~~n~~~~~l~~~~i~~~~~d~~~~~--------~~~~fD~Ii~~~p~~~~  132 (194)
T d1dusa_          82 INRRAI-KLAKENIKLNNLDNYDIRVVHSDLYENV--------KDRKYNKIITNPPIRAG  132 (194)
T ss_dssp             SCHHHH-HHHHHHHHHTTCTTSCEEEEECSTTTTC--------TTSCEEEEEECCCSTTC
T ss_pred             eccccc-hhHHHHHHHhCCccceEEEEEcchhhhh--------ccCCceEEEEcccEEec
Confidence            999998 99999999998864 5889999987643        24689999999999764

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.62  E-value=1.4e-15  Score=141.07  Aligned_cols=84  Identities=15%  Similarity=0.205  Sum_probs=75.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||||++++.|+..||.+|++||+|+.++ +++++|++.|++. ++++++++|++++++...   ..+++||
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~-~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~---~~~~~fD  219 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSR-ALSLAHFEANHLDMANHQLVVMDVFDYFKYAR---RHHLTYD  219 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHH-HHHHHHHHHTTCCCTTEEEEESCHHHHHHHHH---HTTCCEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHH-HHHHHHHHHhcccCcceEEEEccHHHHHHHHH---hhcCCCC
Confidence            5889999999999999999999999999999999998 9999999999985 568999999999987653   2357899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|++|||.-
T Consensus       220 ~Ii~DPP~f  228 (317)
T d2b78a2         220 IIIIDPPSF  228 (317)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEcChhh
Confidence            999999964

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.61  E-value=2.9e-15  Score=127.64  Aligned_cols=99  Identities=19%  Similarity=0.131  Sum_probs=86.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      +.||.+.+|..+++.+..       .++.+|||+|||||.++++++.++ .+|++||+|+.++ +.+++|++.+|+.+++
T Consensus        14 ~~~t~~eir~~il~~l~~-------~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l-~~a~~n~~~~gl~~~v   84 (186)
T d1l3ia_          14 PGPTAMEVRCLIMCLAEP-------GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAI-STTEMNLQRHGLGDNV   84 (186)
T ss_dssp             CCCCCHHHHHHHHHHHCC-------CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHH-HHHHHHHHHTTCCTTE
T ss_pred             CCCChHHHHHHHHHhcCC-------CCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHH-HHHHHHHHHcCCCcce
Confidence            468999999999999865       368999999999999999877664 5899999999998 9999999999998889


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +++++|+.+.+.       ....||+||++.+...
T Consensus        85 ~~~~gda~~~~~-------~~~~~D~v~~~~~~~~  112 (186)
T d1l3ia_          85 TLMEGDAPEALC-------KIPDIDIAVVGGSGGE  112 (186)
T ss_dssp             EEEESCHHHHHT-------TSCCEEEEEESCCTTC
T ss_pred             EEEECchhhccc-------ccCCcCEEEEeCcccc
Confidence            999999987752       2478999999998753

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=3.5e-15  Score=134.72  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=73.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||+|.+++.++++|+.+|++||+|+.|+ +.+++|++.|++.++++++++|+.++.        ....||.
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~-~~~~~N~~~n~l~~~v~~~~~D~~~~~--------~~~~~D~  177 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFP--------GENIADR  177 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCC--------CCSCEEE
T ss_pred             CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHH-HHHHHHHHHhCCCceEEEEEcchHHhc--------cCCCCCE
Confidence            5899999999999999999999988999999999998 999999999999999999999998764        2468999


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |++|||+..
T Consensus       178 Ii~~~p~~~  186 (260)
T d2frna1         178 ILMGYVVRT  186 (260)
T ss_dssp             EEECCCSSG
T ss_pred             EEECCCCch
Confidence            999998765

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=7.4e-15  Score=135.91  Aligned_cols=84  Identities=24%  Similarity=0.306  Sum_probs=72.9

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ..+.+|||+|||||.+++.++ +|+.+|++||+|+.++ +.+++|++.+|+.+ ++++++|+.+++..+.   ...++||
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a-~g~~~V~~vD~s~~al-~~a~~n~~~ngl~~-~~~i~~d~~~~~~~~~---~~~~~fD  217 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLA-LGFREVVAVDSSAEAL-RRAEENARLNGLGN-VRVLEANAFDLLRRLE---KEGERFD  217 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHH-HHEEEEEEEESCHHHH-HHHHHHHHHTTCTT-EEEEESCHHHHHHHHH---HTTCCEE
T ss_pred             hCCCeeeccCCCCcHHHHHHH-hcCCcEEeecchHHHH-HHHHHHHHHcCCCC-cceeeccHHHHhhhhH---hhhcCCC
Confidence            468899999999999999765 5667899999999998 99999999999964 8999999999886653   2357899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|++|||+..
T Consensus       218 ~Vi~DpP~~~  227 (318)
T d1wxxa2         218 LVVLDPPAFA  227 (318)
T ss_dssp             EEEECCCCSC
T ss_pred             EEEEcCCccc
Confidence            9999999764

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.3e-13  Score=127.98  Aligned_cols=117  Identities=16%  Similarity=0.101  Sum_probs=88.0

Q ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 022298          117 RRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI  196 (299)
Q Consensus       117 ~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~  196 (299)
                      .|.++.++.+.+..+.+. ..+.+++.+....+   ...+.+|||||||+|++++.++. .+.+|++||.++.++ +.++
T Consensus       178 ~g~~~~i~p~sFfQ~N~~-~~e~l~~~v~~~~~---~~~~~~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai-~~A~  251 (358)
T d1uwva2         178 NGLRLTFSPRDFIQVNAG-VNQKMVARALEWLD---VQPEDRVLDLFCGMGNFTLPLAT-QAASVVGVEGVPALV-EKGQ  251 (358)
T ss_dssp             TTEEEECCSSSCCCSBHH-HHHHHHHHHHHHHT---CCTTCEEEEESCTTTTTHHHHHT-TSSEEEEEESCHHHH-HHHH
T ss_pred             CCEEEEECCchhhccchh-hhhHHHHHHHHhhc---cCCCceEEEecccccccchhccc-cccEEEeccCcHHHH-HHHH
Confidence            577888888777777765 34444444332210   13578999999999999996554 456899999999998 9999


Q ss_pred             HHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       197 ~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +|++.+++.+ ++++.+|+.+.+...   ......||+|++|||+..
T Consensus       252 ~na~~n~i~n-~~~~~~~~~~~~~~~---~~~~~~~d~vilDPPR~G  294 (358)
T d1uwva2         252 QNARLNGLQN-VTFYHENLEEDVTKQ---PWAKNGFDKVLLDPARAG  294 (358)
T ss_dssp             HHHHHTTCCS-EEEEECCTTSCCSSS---GGGTTCCSEEEECCCTTC
T ss_pred             HhHHhccccc-ceeeecchhhhhhhh---hhhhccCceEEeCCCCcc
Confidence            9999999975 889999988765322   112467999999999986

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=1.4e-13  Score=123.60  Aligned_cols=97  Identities=24%  Similarity=0.228  Sum_probs=78.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 022298          124 PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (299)
Q Consensus       124 p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g  203 (299)
                      ..|.+++|||..+.+++-..+         .++.+|||+|||||.+++.|+..|+ +|++||+|+.++ +.+++|++.++
T Consensus        98 aFGTG~H~TT~l~l~~l~~~~---------~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av-~~A~~na~~n~  166 (254)
T d2nxca1          98 AFGTGHHETTRLALKALARHL---------RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVL-PQAEANAKRNG  166 (254)
T ss_dssp             ----CCSHHHHHHHHHHHHHC---------CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGH-HHHHHHHHHTT
T ss_pred             ccCccccchhhHHHHHHHhhc---------CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHH-HHHHHHHHHcC
Confidence            456678999998888875543         3588999999999999999888886 699999999998 99999999999


Q ss_pred             CCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          204 FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       204 ~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                      +..  +++++|+.+.+.        .++||+|+++-.+
T Consensus       167 ~~~--~~~~~d~~~~~~--------~~~fD~V~ani~~  194 (254)
T d2nxca1         167 VRP--RFLEGSLEAALP--------FGPFDLLVANLYA  194 (254)
T ss_dssp             CCC--EEEESCHHHHGG--------GCCEEEEEEECCH
T ss_pred             Cce--eEEecccccccc--------ccccchhhhcccc
Confidence            854  578899876532        3689999998543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.9e-13  Score=122.26  Aligned_cols=125  Identities=15%  Similarity=0.076  Sum_probs=86.7

Q ss_pred             eeCCeEEecCCCC-CCCCCHHH-HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHH
Q 022298          115 KARRKKLLSPKGM-DVRPMMEV-VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVV  191 (299)
Q Consensus       115 k~~Gr~L~~p~~~-~~RPttd~-Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al  191 (299)
                      .+.|..+.+|++. .+||.+.. +.+.+.+.+....  .......++||+|||||++++.++++ ...+++++|+|++|+
T Consensus        21 ~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~--~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al   98 (250)
T d2h00a1          21 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQD--SDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCF   98 (250)
T ss_dssp             HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCC--GGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred             HHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhc--cCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHH
Confidence            4567888888875 36766544 3344444432210  00123569999999999999986664 334799999999998


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          192 SNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       192 ~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                       +++++|++.+++.+++.+++.+....+... ......++||+|++||||-.
T Consensus        99 -~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~ivsNPPY~~  148 (250)
T d2h00a1          99 -NYAKKNVEQNNLSDLIKVVKVPQKTLLMDA-LKEESEIIYDFCMCNPPFFA  148 (250)
T ss_dssp             -HHHHHHHHHTTCTTTEEEEECCTTCSSTTT-STTCCSCCBSEEEECCCCC-
T ss_pred             -HHHHHHHHHhCCCcceeeeeeccHHhhhhh-hhhcccCceeEEEecCcccc
Confidence             999999999999999998887654433110 00112468999999999985

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.35  E-value=5.2e-12  Score=119.23  Aligned_cols=118  Identities=22%  Similarity=0.313  Sum_probs=88.8

Q ss_pred             EEEEeeeeCCeEEecCCC-------CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHH-HHHcCCCE
Q 022298          109 LQVLGGKARRKKLLSPKG-------MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE-AISRGCSE  180 (299)
Q Consensus       109 mrIi~Gk~~Gr~L~~p~~-------~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIE-AlSrGa~~  180 (299)
                      +.|..|+   -++.+|.+       .+++|.+..-|...+-.+..       ..+.+|||++||||..||. |...|+.+
T Consensus         2 ~~i~EG~---~~i~vp~~~~~~~~~vFYNp~q~~NRDlsvl~~~~-------~~~~~vLD~~sasG~rsiRya~E~~~~~   71 (375)
T d2dula1           2 IEVQEGK---AKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNI-------LNPKIVLDALSATGIRGIRFALETPAEE   71 (375)
T ss_dssp             EEEEETT---EEEEEC--------CCCCCGGGHHHHHHHHHHHHH-------HCCSEEEESSCTTSHHHHHHHHHSSCSE
T ss_pred             eEEEeCc---EEEEecCCCCCCCCCcccCHHHhhhhHHHHHHHHH-------hCCCEEEEcCCCccHHHHHHHHhCCCCE
Confidence            4555664   44555543       36789887766654444443       2578999999999999996 55578889


Q ss_pred             EEEEeCCHHHHHHHHHHHHHHhCCCC--------------cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          181 VHFVEMDPWVVSNVLIPNLEWTGFLD--------------VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       181 V~~VD~n~~Al~~~a~~N~~~~g~~~--------------~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      |+++|+|+.|+ +++++|++.|+..+              .+.+.+.|+..++...      ++.||+|.+|| |+..
T Consensus        72 V~~nDis~~A~-~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~------~~~fDvIDiDP-fGs~  141 (375)
T d2dula1          72 VWLNDISEDAY-ELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER------HRYFHFIDLDP-FGSP  141 (375)
T ss_dssp             EEEEESCHHHH-HHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS------TTCEEEEEECC-SSCC
T ss_pred             EEEecCCHHHH-HHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhh------cCcCCcccCCC-CCCc
Confidence            99999999998 99999999998643              3567888988877542      46899999998 8863

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1e-10  Score=102.30  Aligned_cols=91  Identities=16%  Similarity=0.113  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      .|.++.....+-..+..       .++.+|||+|||+|.++..++.+ |+ +|++||+|+.++ +.+++|++..|+.+++
T Consensus        15 ~p~~~~~~~~l~~~~~l-------~pg~~VLDiGCG~G~~~~~la~~~~~-~v~GvD~s~~~~-~~ar~~~~~~gl~~~v   85 (245)
T d1nkva_          15 NPFTEEKYATLGRVLRM-------KPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFT-AQAKRRAEELGVSERV   85 (245)
T ss_dssp             SSCCHHHHHHHHHHTCC-------CTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHH-HHHHHHHHHTTCTTTE
T ss_pred             CCCCHHHHHHHHHHcCC-------CCCCEEEEEcCCCCHHHHHHHHhcCC-EEEEEecccchh-hHHHHHHHHhhccccc
Confidence            56666655556555543       36889999999999999987775 54 799999999998 9999999999998889


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      +++.+|+.++.        ..++||+|++
T Consensus        86 ~~~~~d~~~~~--------~~~~fD~v~~  106 (245)
T d1nkva_          86 HFIHNDAAGYV--------ANEKCDVAAC  106 (245)
T ss_dssp             EEEESCCTTCC--------CSSCEEEEEE
T ss_pred             hhhhhHHhhcc--------ccCceeEEEE
Confidence            99999988753        2478999986

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.4e-10  Score=105.48  Aligned_cols=81  Identities=15%  Similarity=0.062  Sum_probs=69.2

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .++++|||+|||+|.+++.|+..||.+|+++|.++.+.  .++++++.++..++++++++|+.++.       ...++||
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~--~a~~~~~~~~~~~~i~~~~~~~~~l~-------~~~~~~D  104 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY--QAMDIIRLNKLEDTITLIKGKIEEVH-------LPVEKVD  104 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH--HHHHHHHHTTCTTTEEEEESCTTTSC-------CSCSCEE
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH--HHHHHHHHhCCCccceEEEeeHHHhc-------Cccccce
Confidence            46899999999999999999999999999999999874  57777888888888999999988752       2347899


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +|++++....
T Consensus       105 ~Ivse~~~~~  114 (311)
T d2fyta1         105 VIISEWMGYF  114 (311)
T ss_dssp             EEEECCCBTT
T ss_pred             EEEEeeeeee
Confidence            9999987664

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=1.4e-10  Score=105.91  Aligned_cols=80  Identities=19%  Similarity=0.068  Sum_probs=69.0

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .++++|||+|||+|.+++.|+..||.+|++||.++.+  ..+++|++.+++.++++++++|+.+..       ...++||
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~--~~a~~~~~~n~~~~~v~~~~~~~~~~~-------~~~~~~D  102 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS--DYAVKIVKANKLDHVVTIIKGKVEEVE-------LPVEKVD  102 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH--HHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSSCEE
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH--hhhhhHHHHhCCccccceEeccHHHcc-------cccceeE
Confidence            3689999999999999999999999999999999864  578899999999999999999988752       2347899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|+++....
T Consensus       103 ~ivs~~~~~  111 (316)
T d1oria_         103 IIISEWMGY  111 (316)
T ss_dssp             EEEECCCBB
T ss_pred             EEeeeeeee
Confidence            999987644

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=2.5e-10  Score=104.69  Aligned_cols=80  Identities=20%  Similarity=0.149  Sum_probs=69.2

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .++.+|||+|||+|.+++.|+.+||.+|+++|.++. + +.++++++.++..++++++++|+.+..       ...++||
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~-~-~~a~~~~~~~~~~~~i~~i~~~~~~l~-------~~~~~~D  107 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-I-EMAKELVELNGFSDKITLLRGKLEDVH-------LPFPKVD  107 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTH-H-HHHHHHHHHTTCTTTEEEEESCTTTSC-------CSSSCEE
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHH-H-HHHHHHHHHhCccccceEEEeehhhcc-------Cccccee
Confidence            368999999999999999999999999999999974 4 789999999999888999999987652       2347899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|++++...
T Consensus       108 ~i~se~~~~  116 (328)
T d1g6q1_         108 IIISEWMGY  116 (328)
T ss_dssp             EEEECCCBT
T ss_pred             EEEEEecce
Confidence            999988654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.07  E-value=3.6e-10  Score=97.88  Aligned_cols=74  Identities=19%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||+|.++..++.+|+ +|++||+|+.++ +.++++++..+..+ +.++++|+.++-       -.+++||+
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l-~~A~~~~~~~~~~~-~~~~~~d~~~~~-------~~~~~fD~   85 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMV-EVASSFAQEKGVEN-VRFQQGTAESLP-------FPDDSFDI   85 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHH-HHHHHHHHHHTCCS-EEEEECBTTBCC-------SCTTCEEE
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhh-hhhhhhhccccccc-cccccccccccc-------ccccccce
Confidence            688999999999999999888885 799999999998 99999999998854 899999988641       13578999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++.
T Consensus        86 v~~~   89 (234)
T d1xxla_          86 ITCR   89 (234)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            9974

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=99.03  E-value=1.4e-10  Score=103.74  Aligned_cols=81  Identities=19%  Similarity=0.151  Sum_probs=68.2

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC--------CcEEEEEcchhhHHHHHhhhcC
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--------DVSSIHTVRVETFLERAEQFVG  227 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~--------~~~~vi~~D~~~~l~~~~~~~~  227 (299)
                      ..+|||++||.|.-++++++.|+ +|++||.|+... .+++.|++.....        .+++++++|+.+++...     
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~-~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----  161 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHH-HHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHH-HHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence            34899999999999999999998 499999999987 8999998765421        36899999999988542     


Q ss_pred             CCCCeeEEEEcCCCCCC
Q 022298          228 KDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       228 ~~~~fDlI~iDPPY~~~  244 (299)
                       .+.||+||+||+|...
T Consensus       162 -~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         162 -TPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             -SSCCSEEEECCCCCCC
T ss_pred             -CCCCCEEEECCCCccc
Confidence             4679999999999753

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.01  E-value=1.2e-09  Score=97.25  Aligned_cols=92  Identities=15%  Similarity=0.146  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~  213 (299)
                      +..+.+.+.|....+.   .++.+|||+|||+|.+++.++.+ |+ +|++||+++..+ +.++++.+..|+.++++++++
T Consensus        50 ~~~~~~~~~l~~~~~l---~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i-~~a~~~~~~~gl~~~v~~~~~  124 (282)
T d2o57a1          50 RTDEWLASELAMTGVL---QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQN-KRNEEYNNQAGLADNITVKYG  124 (282)
T ss_dssp             HHHHHHHHHHHHTTCC---CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHHHTCTTTEEEEEC
T ss_pred             HHHHHHHHHHHHhcCC---CCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhh-hhhhccccccccccccccccc
Confidence            3445555666543221   25889999999999999988876 55 799999999998 999999999999888999999


Q ss_pred             chhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          214 RVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       214 D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      |+.++-       ...++||+|++-
T Consensus       125 d~~~l~-------~~~~sfD~V~~~  142 (282)
T d2o57a1         125 SFLEIP-------CEDNSYDFIWSQ  142 (282)
T ss_dssp             CTTSCS-------SCTTCEEEEEEE
T ss_pred             cccccc-------ccccccchhhcc
Confidence            987641       234789999874

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.01  E-value=8.1e-10  Score=94.55  Aligned_cols=74  Identities=16%  Similarity=0.086  Sum_probs=62.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+++.++.+|+ +|+++|+|+.++ +.++++++..+.. +++++++|+.++-       ...+.||+
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i-~~A~~~~~~~~~~-~i~~~~~d~~~l~-------~~~~~fD~   84 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDIL-KVARAFIEGNGHQ-QVEYVQGDAEQMP-------FTDERFHI   84 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCC-CCC-------SCTTCEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHH-hhhhhcccccccc-ccccccccccccc-------cccccccc
Confidence            578999999999999998888886 799999999998 9999999999875 4899999987641       13578999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++.
T Consensus        85 v~~~   88 (231)
T d1vl5a_          85 VTCR   88 (231)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            9865

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.99  E-value=1.2e-09  Score=94.49  Aligned_cols=71  Identities=23%  Similarity=0.211  Sum_probs=61.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ...+|||+|||||.+++.++..|+ +|++||.|+.++ +.+++|+...+.  +++++++|+.++.        ..++||+
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi-~~a~~~~~~~~~--~i~~~~~d~~~l~--------~~~~fD~  108 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEML-RVARRKAKERNL--KIEFLQGDVLEIA--------FKNEFDA  108 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CCEEEESCGGGCC--------CCSCEEE
T ss_pred             CCCEEEEeCCCCCccchhhcccce-EEEEEeeccccc-cccccccccccc--cchheehhhhhcc--------cccccch
Confidence            467999999999999999888987 699999999998 999999988776  3789999998752        2368999


Q ss_pred             EEE
Q 022298          235 MSV  237 (299)
Q Consensus       235 I~i  237 (299)
                      |++
T Consensus       109 I~~  111 (251)
T d1wzna1         109 VTM  111 (251)
T ss_dssp             EEE
T ss_pred             Hhh
Confidence            987

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.98  E-value=6.1e-10  Score=99.38  Aligned_cols=80  Identities=15%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .+|.+|||+|||||++++.++.. | ..+|+++|.+++.+ +.+++|++.++..+++++..+|+.+.+        .+..
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~-~~A~~n~~~~~~~~nv~~~~~Di~~~~--------~~~~  154 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNL-KKAMDNLSEFYDIGNVRTSRSDIADFI--------SDQM  154 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHH-HHHHHHHHTTSCCTTEEEECSCTTTCC--------CSCC
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhcCCCceEEEEeeeeccc--------ccce
Confidence            36899999999999999887653 3 45899999999998 999999998876677999999987753        2468


Q ss_pred             eeEEEEcCCCC
Q 022298          232 FDYMSVTPPYT  242 (299)
Q Consensus       232 fDlI~iDPPY~  242 (299)
                      ||.||+|.|-.
T Consensus       155 fD~V~ld~p~p  165 (250)
T d1yb2a1         155 YDAVIADIPDP  165 (250)
T ss_dssp             EEEEEECCSCG
T ss_pred             eeeeeecCCch
Confidence            99999999854

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.95  E-value=2e-09  Score=91.03  Aligned_cols=78  Identities=24%  Similarity=0.315  Sum_probs=66.3

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      +.+++|||+|||+|..++.++++|. +|++||+++.++ +.++++.+..++.+ +++...|+..+.        ..++||
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l-~~a~~~~~~~~~~~-~~~~~~d~~~~~--------~~~~fD   97 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASM-ANLERIKAAEGLDN-LQTDLVDLNTLT--------FDGEYD   97 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCTT-EEEEECCTTTCC--------CCCCEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHH-HHHHHHhhhccccc-hhhhheeccccc--------cccccc
Confidence            3567999999999999999999997 699999999998 99999999888864 788889987642        247899


Q ss_pred             EEEEcCCCC
Q 022298          234 YMSVTPPYT  242 (299)
Q Consensus       234 lI~iDPPY~  242 (299)
                      +|++.-.+.
T Consensus        98 ~I~~~~~~~  106 (198)
T d2i6ga1          98 FILSTVVMM  106 (198)
T ss_dssp             EEEEESCGG
T ss_pred             EEEEeeeee
Confidence            999876554

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.94  E-value=2.1e-09  Score=93.54  Aligned_cols=72  Identities=15%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .++.+|||+|||+|.+++.++.+|. +|++||.|+.++ +.+++++...+.  +++++++|+.++.        ..++||
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml-~~A~~~~~~~~~--~v~~~~~d~~~~~--------~~~~fD  103 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEML-SEAENKFRSQGL--KPRLACQDISNLN--------INRKFD  103 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHH-HHHHHHHHHTTC--CCEEECCCGGGCC--------CSCCEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhh-hhccccccccCc--cceeeccchhhhc--------cccccc
Confidence            4578999999999999999988887 699999999998 999999888776  3789999998752        246899


Q ss_pred             EEEE
Q 022298          234 YMSV  237 (299)
Q Consensus       234 lI~i  237 (299)
                      +|++
T Consensus       104 ~i~~  107 (246)
T d1y8ca_         104 LITC  107 (246)
T ss_dssp             EEEE
T ss_pred             ccce
Confidence            9997

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=4.5e-09  Score=94.40  Aligned_cols=115  Identities=15%  Similarity=0.070  Sum_probs=83.3

Q ss_pred             eeeCCeEEecCCCCC---CCCCHHHH---------------HHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH
Q 022298          114 GKARRKKLLSPKGMD---VRPMMEVV---------------KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS  175 (299)
Q Consensus       114 Gk~~Gr~L~~p~~~~---~RPttd~V---------------realfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS  175 (299)
                      |+-.|-++.+..+..   .|||.+..               ...+...+..       .++.+|||+|||||++++.++.
T Consensus        44 Gk~~G~~v~t~~g~~~~v~~pt~~~~~~~~~r~tqiiypkD~s~Ii~~l~i-------~PG~~VLE~G~GsG~lt~~La~  116 (264)
T d1i9ga_          44 GLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDI-------FPGARVLEAGAGSGALTLSLLR  116 (264)
T ss_dssp             TCCTTEEEECSSCCEEEEECCCHHHHHTTSCSCSCCCCHHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCCeEEEeCCCCEEEEeCCCHHHHHhhccCCccccchHHHHHHHHHhCC-------CCCCEEEecCcCCcHHHHHHHH
Confidence            566677777766642   47887642               1122222221       3689999999999999998776


Q ss_pred             c-C-CCEEEEEeCCHHHHHHHHHHHHHHh--CCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          176 R-G-CSEVHFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       176 r-G-a~~V~~VD~n~~Al~~~a~~N~~~~--g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      . | ..+|+++|++++.+ +.+++|++.+  +..++++++++|+.+.-       ..++.||.||+|-|--.
T Consensus       117 ~vgp~G~V~~~d~~~~~~-~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~-------~~~~~fDaV~ldlp~P~  180 (264)
T d1i9ga_         117 AVGPAGQVISYEQRADHA-EHARRNVSGCYGQPPDNWRLVVSDLADSE-------LPDGSVDRAVLDMLAPW  180 (264)
T ss_dssp             HHCTTSEEEEECSCHHHH-HHHHHHHHHHHTSCCTTEEEECSCGGGCC-------CCTTCEEEEEEESSCGG
T ss_pred             hhCCCcEEEEecCCHHHH-HHHHHhhhhhccCCCceEEEEeccccccc-------ccCCCcceEEEecCCHH
Confidence            4 4 34899999999998 9999999976  33456889999987531       13578999999988653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.93  E-value=7.5e-10  Score=101.02  Aligned_cols=78  Identities=15%  Similarity=0.115  Sum_probs=62.0

Q ss_pred             CCCEEEEECCccchHHHHHHHc----C--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR----G--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK  228 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr----G--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~  228 (299)
                      .+.+|||+|||||++.++++.+    +  ..+++++|+|+.++ ++++.|+...+..  ..+.++|.....        .
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~-~~a~~~~~~~~~~--~~~~~~d~~~~~--------~  185 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI-SLALVGADLQRQK--MTLLHQDGLANL--------L  185 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH-HHHHHHHHHHTCC--CEEEESCTTSCC--------C
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHH-HHHHHHHHHhhhh--hhhhcccccccc--------c
Confidence            4678999999999999988642    2  23699999999998 9999999988764  456777755421        2


Q ss_pred             CCCeeEEEEcCCCCC
Q 022298          229 DGPFDYMSVTPPYTA  243 (299)
Q Consensus       229 ~~~fDlI~iDPPY~~  243 (299)
                      ..+||+|++||||..
T Consensus       186 ~~~fD~vi~NPPy~~  200 (328)
T d2f8la1         186 VDPVDVVISDLPVGY  200 (328)
T ss_dssp             CCCEEEEEEECCCSE
T ss_pred             cccccccccCCCCCC
Confidence            478999999999963

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.91  E-value=2.1e-09  Score=94.28  Aligned_cols=77  Identities=17%  Similarity=-0.000  Sum_probs=63.9

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||+|.....++..|..+|+|||+|+.++ +.+++..+..+...++.++++|+....      ...++.||+
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l-~~A~~r~~~~~~~~~v~f~~~D~~~~~------~~~~~~fD~   96 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI-NDARVRARNMKRRFKVFFRAQDSYGRH------MDLGKEFDV   96 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHH-HHHHHHHHTSCCSSEEEEEESCTTTSC------CCCSSCEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHhcCCCcceEEEEcchhhhc------ccccccceE
Confidence            5789999999999998888888888899999999998 999998887777667889999985431      112468999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++.
T Consensus        97 V~~~  100 (252)
T d1ri5a_          97 ISSQ  100 (252)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9974

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.7e-09  Score=96.78  Aligned_cols=116  Identities=18%  Similarity=0.115  Sum_probs=79.8

Q ss_pred             eeeCCeEEecCCCCC---CCCCHHHHHH---------------HHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH
Q 022298          114 GKARRKKLLSPKGMD---VRPMMEVVKG---------------AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS  175 (299)
Q Consensus       114 Gk~~Gr~L~~p~~~~---~RPttd~Vre---------------alfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS  175 (299)
                      |+-.|-.+.+..|..   .|||.+....               .+...+.-       .+|.+|||+|||||++++.++.
T Consensus        46 Gk~~G~~v~~~~g~~~~v~~Pt~~d~~~~~~r~tqiiypkD~~~Il~~l~i-------~pG~rVLE~GtGsG~lt~~LAr  118 (324)
T d2b25a1          46 GKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDI-------NPGDTVLEAGSGSGGMSLFLSK  118 (324)
T ss_dssp             TCCTTEEEECTTSCEEEEECCCHHHHHHHSCCSSCCCCHHHHHHHHHHHTC-------CTTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCCcEEEeCCCCEEEEeCCCHHHHhhccCCCCcccccccHHHHHHHhCC-------CCCCEEEEecccccHHHHHHHH
Confidence            555566666665543   4888764322               22233321       3689999999999999998765


Q ss_pred             c-C-CCEEEEEeCCHHHHHHHHHHHHHHhC----------CCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          176 R-G-CSEVHFVEMDPWVVSNVLIPNLEWTG----------FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       176 r-G-a~~V~~VD~n~~Al~~~a~~N~~~~g----------~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      . | ..+|+++|++++.+ +.+++|++..+          ..++++++.+|+..+....     ....||.||+|-|--
T Consensus       119 ~vg~~G~V~t~E~~~~~~-~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~-----~~~~fD~V~LD~p~P  191 (324)
T d2b25a1         119 AVGSQGRVISFEVRKDHH-DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI-----KSLTFDAVALDMLNP  191 (324)
T ss_dssp             HHCTTCEEEEEESSHHHH-HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC------------EEEEEECSSST
T ss_pred             HhCCCcEEEEecCCHHHH-HHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc-----CCCCcceEeecCcCH
Confidence            3 4 34899999999998 99999999752          3456899999987654322     235799999998853

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.89  E-value=3.2e-09  Score=89.80  Aligned_cols=73  Identities=19%  Similarity=0.168  Sum_probs=60.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||+|.+++.++.+|+ +|+++|+|+.++ +.+++++...+..  +..+.+|+.+.-       ...+.||+
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i-~~ak~~~~~~~~~--~~~~~~d~~~l~-------~~~~~fD~  105 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMI-RKAREYAKSRESN--VEFIVGDARKLS-------FEDKTFDY  105 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCC--CEEEECCTTSCC-------SCTTCEEE
T ss_pred             CCCEEEEECCCcchhhhhHhhhhc-ccccccccccch-hhhhhhhcccccc--cccccccccccc-------ccCcCceE
Confidence            568999999999999999888886 699999999998 9999998877753  567888887641       23578999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++-
T Consensus       106 I~~~  109 (226)
T d1ve3a1         106 VIFI  109 (226)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9974

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.2e-09  Score=94.06  Aligned_cols=75  Identities=16%  Similarity=0.139  Sum_probs=63.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.++..+|++||+++.++ +.+++++...+.. +++++++|+.++.       ...++||+
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l-~~ak~~~~~~~~~-~~~f~~~d~~~~~-------~~~~~fD~  130 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGKR-VRNYFCCGLQDFT-------PEPDSYDV  130 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHH-HHHHHHTGGGGGG-EEEEEECCGGGCC-------CCSSCEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHh-hcccccccccccc-ccccccccccccc-------cccccccc
Confidence            4679999999999999988888888999999999998 9999998877764 4789999998753       23578999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++.
T Consensus       131 I~~~  134 (222)
T d2ex4a1         131 IWIQ  134 (222)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            9974

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.8e-09  Score=92.65  Aligned_cols=80  Identities=16%  Similarity=0.024  Sum_probs=64.8

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|..+.+++..+..+|++||+|+.++ +.++++.+..+  ..+.++.+|+.......     ..++||.
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~-~~a~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~fD~  124 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQT--HKVIPLKGLWEDVAPTL-----PDGHFDG  124 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHH-HHHHHHGGGCS--SEEEEEESCHHHHGGGS-----CTTCEEE
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHH-HHHHHHhhhcc--ccccccccccccccccc-----ccccccc
Confidence            5789999999999999988877766899999999998 99999987654  34677888887665322     3578999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++|+...
T Consensus       125 i~fD~~~~  132 (229)
T d1zx0a1         125 ILYDTYPL  132 (229)
T ss_dssp             EEECCCCC
T ss_pred             eeeccccc
Confidence            99998644

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.86  E-value=1.5e-09  Score=89.49  Aligned_cols=84  Identities=13%  Similarity=-0.043  Sum_probs=62.0

Q ss_pred             HHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC-----------CCc
Q 022298          139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-----------LDV  207 (299)
Q Consensus       139 alfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~-----------~~~  207 (299)
                      ..|..|..       .++.+|||+|||+|..++.++.+|. +|++||+|+.++ +.++++++..+.           ...
T Consensus        11 ~~~~~l~~-------~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (201)
T d1pjza_          11 QYWSSLNV-------VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAV-ERYFTERGEQPHITSQGDFKVYAAPG   81 (201)
T ss_dssp             HHHHHHCC-------CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHH-HHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred             HHHHHcCC-------CCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHH-HHHHHHhccccchhhhhhhhhccccc
Confidence            35666653       4688999999999999999999998 699999999998 999888754322           112


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      .+++++|+.+.....      ...||+|+.
T Consensus        82 ~~~~~~d~~~l~~~~------~~~~D~i~~  105 (201)
T d1pjza_          82 IEIWCGDFFALTARD------IGHCAAFYD  105 (201)
T ss_dssp             SEEEEECCSSSTHHH------HHSEEEEEE
T ss_pred             cceeccccccccccc------ccceeEEEE
Confidence            457777776543322      257888875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.83  E-value=1.2e-08  Score=87.61  Aligned_cols=93  Identities=9%  Similarity=-0.079  Sum_probs=69.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr---Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      |.=+.+.+.+..++....     .++.+|||+|||||.++++++..   ...+|++||.|+.++ +.++++++..+...+
T Consensus        20 P~Y~~~~~~i~~~~~~~~-----~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml-~~A~~~~~~~~~~~~   93 (225)
T d1im8a_          20 PGYSNIITAIGMLAERFV-----TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIP   93 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHC-----CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHH-HHHHHHHHTSCCSSC
T ss_pred             CCHHHHHHHHHHHHHHhc-----CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHH-HHHHHHhHhhcccch
Confidence            333444455555555432     35789999999999999887752   234799999999998 999999998887777


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVT  238 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD  238 (299)
                      +++..+|+.++         ....+|+|++.
T Consensus        94 ~~~~~~d~~~~---------~~~~~d~i~~~  115 (225)
T d1im8a_          94 VEILCNDIRHV---------EIKNASMVILN  115 (225)
T ss_dssp             EEEECSCTTTC---------CCCSEEEEEEE
T ss_pred             hhhccchhhcc---------ccccceeeEEe
Confidence            88888887654         13678988874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=1e-08  Score=91.88  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=66.8

Q ss_pred             CCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      .++.+|||+|||||++++.++.. | ..+|+++|++++.+ +.+++|++.+++.+++.+...|+....        ....
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~-~~A~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~  172 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFA-KLAESNLTKWGLIERVTIKVRDISEGF--------DEKD  172 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHH-HHHHHHHHHTTCGGGEEEECCCGGGCC--------SCCS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHHhccccCcEEEeccccccc--------cccc
Confidence            36899999999999999987764 3 34799999999998 999999999998878888888875432        2467


Q ss_pred             eeEEEEcCCCC
Q 022298          232 FDYMSVTPPYT  242 (299)
Q Consensus       232 fDlI~iDPPY~  242 (299)
                      ||.||+|.|--
T Consensus       173 ~D~V~~d~p~p  183 (266)
T d1o54a_         173 VDALFLDVPDP  183 (266)
T ss_dssp             EEEEEECCSCG
T ss_pred             eeeeEecCCCH
Confidence            99999998854

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.80  E-value=1.5e-08  Score=87.56  Aligned_cols=79  Identities=20%  Similarity=0.104  Sum_probs=64.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||||.++..++.+ | ..+|+++|++++.+ +.+++|++..++.+ +.++++|+.+.+.       ..++|
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~-~~a~~~~~~~~~~n-~~~~~~d~~~~~~-------~~~~f  145 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVERLGIEN-VIFVCGDGYYGVP-------EFSPY  145 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEESCGGGCCG-------GGCCE
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhH-HHhhhhHhhhcccc-cccccCchHHccc-------cccch
Confidence            6889999999999999876653 3 34799999999998 99999999999865 7788899876432       13689


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |+|+++....
T Consensus       146 D~I~~~~~~~  155 (213)
T d1dl5a1         146 DVIFVTVGVD  155 (213)
T ss_dssp             EEEEECSBBS
T ss_pred             hhhhhhccHH
Confidence            9999986543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=3.7e-08  Score=87.95  Aligned_cols=91  Identities=18%  Similarity=0.087  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC---cEEE
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD---VSSI  210 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~---~~~v  210 (299)
                      +..+..+.+.+...       .+.+|||+|||+|.+++.++.+|+ +|++||+|+.++ +.+++|....+...   ...+
T Consensus        42 ~~~~~~l~~~l~~~-------~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml-~~A~~~~~~~~~~~~~~~~~~  112 (292)
T d1xvaa_          42 AEYKAWLLGLLRQH-------GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKML-KYALKERWNRRKEPAFDKWVI  112 (292)
T ss_dssp             HHHHHHHHHHHHHT-------TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTTSHHHHTCEE
T ss_pred             HHHHHHHHHHhhhc-------CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHH-HHHHHHHHhcccccccceeee
Confidence            44455666677653       467999999999999999999997 699999999998 99999988766531   2345


Q ss_pred             EEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          211 HTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       211 i~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      ...++.......    ...+.||+|++
T Consensus       113 ~~~~~~~~~~~~----~~~~~fd~v~~  135 (292)
T d1xvaa_         113 EEANWLTLDKDV----PAGDGFDAVIC  135 (292)
T ss_dssp             EECCGGGHHHHS----CCTTCEEEEEE
T ss_pred             eecccccccccc----CCCCCceEEEE
Confidence            566665443221    12468999986

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.74  E-value=1.4e-08  Score=86.17  Aligned_cols=87  Identities=17%  Similarity=0.132  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (299)
Q Consensus       131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~  208 (299)
                      .|+.-|.+.+.+.+..       ..+.+|||+|||||.+.+++..+  ....++++|+++.++ +++          ...
T Consensus         2 ~TP~~i~~~m~~l~~~-------~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~-~~~----------~~~   63 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEA-------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-DLP----------PWA   63 (223)
T ss_dssp             CCCHHHHHHHHHHCCC-------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-CCC----------TTE
T ss_pred             CCCHHHHHHHHHhcCC-------CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH-hhc----------ccc
Confidence            3666678888887654       35789999999999998877653  456799999999875 432          234


Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .++++|.....        ...+||+|+.||||..
T Consensus        64 ~~~~~~~~~~~--------~~~~fd~ii~npP~~~   90 (223)
T d2ih2a1          64 EGILADFLLWE--------PGEAFDLILGNPPYGI   90 (223)
T ss_dssp             EEEESCGGGCC--------CSSCEEEEEECCCCCC
T ss_pred             eeeeeehhccc--------cccccceecccCcccc
Confidence            67788866542        2478999999999975

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=98.72  E-value=5.7e-09  Score=92.99  Aligned_cols=108  Identities=13%  Similarity=-0.095  Sum_probs=74.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCC------------------------------
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS------------------------------  179 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~------------------------------  179 (299)
                      .+...+++.+++..+-...+   --.+..++|+|||||++.|||+.....                              
T Consensus        28 ~~~~~~Laa~il~~al~l~~---w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~  104 (249)
T d1o9ga_          28 PAFPVRLATEIFQRALARLP---GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL  104 (249)
T ss_dssp             CCCCHHHHHHHHHHHHHTSS---CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH
T ss_pred             CCcchHHHHHHHHHHhhhhc---CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHH
Confidence            34445667666665422211   013457999999999999998764211                              


Q ss_pred             -----------EEEEEeCCHHHHHHHH---HHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          180 -----------EVHFVEMDPWVVSNVL---IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       180 -----------~V~~VD~n~~Al~~~a---~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                                 .+++.|+|++++ +.+   ++|++..|+.+.+++.+.|+++...... . ......++|++||||+.
T Consensus       105 ~~~~~~~~~~~~i~G~D~d~~ai-~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~-~-~~~~~~GlIVtNPPYGE  179 (249)
T d1o9ga_         105 TARELERREQSERFGKPSYLEAA-QAARRLRERLTAEGGALPCAIRTADVFDPRALSA-V-LAGSAPDVVLTDLPYGE  179 (249)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHH-H-HTTCCCSEEEEECCGGG
T ss_pred             HHHhccccccCCccccccCHHHH-HHHHHHHHHHHHcCCCceeeeeecchhccCcchh-c-cCCCCCCEEEeCCCccc
Confidence                       246788888887 777   5799999998889999999875432111 0 12356799999999986

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.71  E-value=3.1e-08  Score=85.23  Aligned_cols=70  Identities=21%  Similarity=0.193  Sum_probs=56.9

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .++.+|||+|||+|.++..++.+|. +|++||+|+.++ +.++++..     +++.++++|+.++.        ..++||
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i-~~a~~~~~-----~~~~~~~~~~~~~~--------~~~~fD   83 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAI-SHAQGRLK-----DGITYIHSRFEDAQ--------LPRRYD   83 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHH-HHHHHHSC-----SCEEEEESCGGGCC--------CSSCEE
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHh-hhhhcccc-----cccccccccccccc--------cccccc
Confidence            4678999999999999998877886 599999999998 88887632     34788999987642        247899


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      +|++-
T Consensus        84 ~I~~~   88 (225)
T d2p7ia1          84 NIVLT   88 (225)
T ss_dssp             EEEEE
T ss_pred             ccccc
Confidence            99873

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.67  E-value=1.7e-08  Score=95.50  Aligned_cols=100  Identities=20%  Similarity=0.136  Sum_probs=75.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc----CC----------CEEEEEeCCHHHHHH
Q 022298          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----GC----------SEVHFVEMDPWVVSN  193 (299)
Q Consensus       128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr----Ga----------~~V~~VD~n~~Al~~  193 (299)
                      +.-.|+..|.+.+.+.+..       ..+.+|+|++||||.+-++|..+    +.          ..++++|+++.++ .
T Consensus       142 G~f~TP~~Iv~~mv~ll~~-------~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~-~  213 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINP-------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV-T  213 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH-H
T ss_pred             hhhccchhhhHhhheeccC-------cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHH-H
Confidence            3455666677788787764       25789999999999999998753    11          2389999999998 9


Q ss_pred             HHHHHHHHhCCCC-cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          194 VLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       194 ~a~~N~~~~g~~~-~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +++.|+...+... ...+..+|....        ....+||+|++||||+.
T Consensus       214 la~~n~~l~g~~~~~~~i~~~d~l~~--------~~~~~fD~Ii~NPPfg~  256 (425)
T d2okca1         214 LASMNLYLHGIGTDRSPIVCEDSLEK--------EPSTLVDVILANPPFGT  256 (425)
T ss_dssp             HHHHHHHHTTCCSSCCSEEECCTTTS--------CCSSCEEEEEECCCSSC
T ss_pred             HHHhhhhhcCCccccceeecCchhhh--------hcccccceEEecCCCCC
Confidence            9999998887642 345677776542        12468999999999975

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3e-08  Score=85.60  Aligned_cols=75  Identities=15%  Similarity=-0.001  Sum_probs=58.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC----------------CCCcEEEEEcchhhH
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG----------------FLDVSSIHTVRVETF  218 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g----------------~~~~~~vi~~D~~~~  218 (299)
                      .+.+|||+|||+|..++.++++|+ +|++||+++.++ +.++++.....                ...+++++++|+..+
T Consensus        45 ~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          45 SGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGI-QEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHH-HHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHH-HHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            578999999999999999999998 699999999998 88877654221                123578899998775


Q ss_pred             HHHHhhhcCCCCCeeEEEE
Q 022298          219 LERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       219 l~~~~~~~~~~~~fDlI~i  237 (299)
                      ..      ...+.||+|+.
T Consensus       123 ~~------~~~~~fd~i~~  135 (229)
T d2bzga1         123 PR------TNIGKFDMIWD  135 (229)
T ss_dssp             GG------SCCCCEEEEEE
T ss_pred             cc------cccCceeEEEE
Confidence            42      22468999874

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.64  E-value=2.7e-08  Score=87.86  Aligned_cols=77  Identities=14%  Similarity=0.114  Sum_probs=62.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.++..+|++||.++.++ +.++++....   +.++++++|+.++.       ...++||+
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l-~~a~~~~~~~---~~~~~~~~d~~~~~-------~~~~~fD~  161 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGM---PVGKFILASMETAT-------LPPNTYDL  161 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-HHHHHHTTTS---SEEEEEESCGGGCC-------CCSSCEEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHH-Hhhhcccccc---ccceeEEccccccc-------cCCCccce
Confidence            5689999999999999988888777899999999998 8998876432   34788999988752       12478999


Q ss_pred             EEEcCCCC
Q 022298          235 MSVTPPYT  242 (299)
Q Consensus       235 I~iDPPY~  242 (299)
                      |++.-...
T Consensus       162 I~~~~vl~  169 (254)
T d1xtpa_         162 IVIQWTAI  169 (254)
T ss_dssp             EEEESCGG
T ss_pred             EEeecccc
Confidence            99876544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.63  E-value=5.1e-08  Score=87.64  Aligned_cols=71  Identities=17%  Similarity=0.055  Sum_probs=61.1

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ++.+|||+|||.|.+++.++.+ |+ +|++||+|+..+ +.+++.++..++.+++.+...|..++          .++||
T Consensus        52 ~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~-~~a~~~~~~~~l~~~~~~~~~d~~~~----------~~~fD  119 (280)
T d2fk8a1          52 PGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQH-ARCEQVLASIDTNRSRQVLLQGWEDF----------AEPVD  119 (280)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCGGGC----------CCCCS
T ss_pred             CCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHH-HHHHHHHHhhccccchhhhhhhhhhh----------ccchh
Confidence            5889999999999999998876 76 799999999998 99999999999887788887886543          36789


Q ss_pred             EEEE
Q 022298          234 YMSV  237 (299)
Q Consensus       234 lI~i  237 (299)
                      .|++
T Consensus       120 ~i~s  123 (280)
T d2fk8a1         120 RIVS  123 (280)
T ss_dssp             EEEE
T ss_pred             hhhH
Confidence            8875

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.62  E-value=6.7e-08  Score=82.40  Aligned_cols=67  Identities=25%  Similarity=0.292  Sum_probs=52.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.++..++.+|+ +|+++|.++.++ +.+++|.    ..   .++++|+.+.-       ...++||+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l-~~a~~~~----~~---~~~~~~~~~l~-------~~~~~fD~  105 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEML-EVAREKG----VK---NVVEAKAEDLP-------FPSGAFEA  105 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHH-HHHHHHT----CS---CEEECCTTSCC-------SCTTCEEE
T ss_pred             CCCEEEEECCCCchhcccccccce-EEEEeecccccc-ccccccc----cc---ccccccccccc-------cccccccc
Confidence            578999999999999999988887 699999999998 8988762    22   24667776531       22468998


Q ss_pred             EEE
Q 022298          235 MSV  237 (299)
Q Consensus       235 I~i  237 (299)
                      |++
T Consensus       106 ii~  108 (246)
T d2avna1         106 VLA  108 (246)
T ss_dssp             EEE
T ss_pred             eee
Confidence            875

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.59  E-value=9.7e-08  Score=82.93  Aligned_cols=79  Identities=19%  Similarity=0.135  Sum_probs=64.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .++.+|||+|||||..+..++.. | .+|+++|.++..+ +.+++|++.+++.+ +.++++|......       ...+|
T Consensus        77 ~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~-~~a~~~l~~~g~~n-v~~~~gd~~~g~~-------~~~pf  146 (215)
T d1jg1a_          77 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELV-EFAKRNLERAGVKN-VHVILGDGSKGFP-------PKAPY  146 (215)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEESCGGGCCG-------GGCCE
T ss_pred             CccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHH-HHHHHHHHHcCCce-eEEEECccccCCc-------ccCcc
Confidence            36889999999999999765544 5 3599999999998 99999999999865 8999999876432       14789


Q ss_pred             eEEEEcCCCC
Q 022298          233 DYMSVTPPYT  242 (299)
Q Consensus       233 DlI~iDPPY~  242 (299)
                      |.|++.-...
T Consensus       147 D~Iiv~~a~~  156 (215)
T d1jg1a_         147 DVIIVTAGAP  156 (215)
T ss_dssp             EEEEECSBBS
T ss_pred             eeEEeecccc
Confidence            9999876544

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=9.4e-08  Score=86.47  Aligned_cols=84  Identities=8%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             CCCCEEEEECCccchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlS--rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      ..+.+|||+|||.|.=++.+++  .+..+++++|+++.-+ +.+++|++.+|+.+ +.+...|...+....    ...++
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~-~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~----~~~~~  166 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVSC-CELAEEDFLAVSPSD----PRYHE  166 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEECCGGGSCTTC----GGGTT
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHH-HHHHHHHHhcCccc-eeeeehhhhhhcccc----cccce
Confidence            3588999999999987665443  3556899999999998 99999999999876 888888876543211    01257


Q ss_pred             eeEEEEcCCCCC
Q 022298          232 FDYMSVTPPYTA  243 (299)
Q Consensus       232 fDlI~iDPPY~~  243 (299)
                      ||.|++|||...
T Consensus       167 fD~VL~DaPCSg  178 (293)
T d2b9ea1         167 VHYILLDPSCSG  178 (293)
T ss_dssp             EEEEEECCCCCC
T ss_pred             eeEEeecCcccc
Confidence            999999999876

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=1.8e-07  Score=80.80  Aligned_cols=83  Identities=14%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ...+|||+|||+|.-++.++..  ...+|+++|+++..+ +.+++|++..|+.++++++.+|+.+.+..+... .....|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~-~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~-~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYA-AITQQMLNFAGLQDKVTILNGASQDLIPQLKKK-YDVDTL  133 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHH-SCCCCE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHH-HHHHHHHHHcCCCccceeeeccccccccchhhc-cccccc
Confidence            4679999999999999876642  235899999999998 999999999999999999999999887543211 123579


Q ss_pred             eEEEEcC
Q 022298          233 DYMSVTP  239 (299)
Q Consensus       233 DlI~iDP  239 (299)
                      |+||+|-
T Consensus       134 D~ifiD~  140 (214)
T d2cl5a1         134 DMVFLDH  140 (214)
T ss_dssp             EEEEECS
T ss_pred             ceeeecc
Confidence            9999994

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=2.6e-07  Score=83.51  Aligned_cols=91  Identities=15%  Similarity=0.024  Sum_probs=69.2

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 022298          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (299)
Q Consensus       132 ttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~v  210 (299)
                      |.+..-+...+.+-...+   ..+|.+|||+|||.|++++.++. .|+ +|++|++|+..+ +.+++.++..|+.+++++
T Consensus        41 tL~~Aq~~k~~~~~~~l~---l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~-~~a~~~~~~~~l~~~v~~  115 (291)
T d1kpia_          41 TLEEAQYAKRKLALDKLN---LEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQY-AHDKAMFDEVDSPRRKEV  115 (291)
T ss_dssp             CHHHHHHHHHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHHSCCSSCEEE
T ss_pred             CHHHHHHHHHHHHHHhcC---CCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHH-HHHHHHHHhhccchhhhh
Confidence            344333444444433322   13689999999999999998875 577 799999999998 999999999999888888


Q ss_pred             EEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          211 HTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       211 i~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      ...|....          .++||.|++
T Consensus       116 ~~~d~~~~----------~~~fD~i~s  132 (291)
T d1kpia_         116 RIQGWEEF----------DEPVDRIVS  132 (291)
T ss_dssp             EECCGGGC----------CCCCSEEEE
T ss_pred             hhhccccc----------ccccceEee
Confidence            88886432          478998884

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.6e-07  Score=81.60  Aligned_cols=80  Identities=15%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCC----CcEEEEEcchhhHHHHHhhhcCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFL----DVSSIHTVRVETFLERAEQFVGK  228 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~----~~~~vi~~D~~~~l~~~~~~~~~  228 (299)
                      ++.+|||+|||||..+..++.+ | ..+|+++|++++.+ +.+++|++..+..    +++.++.+|+.....       .
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~-~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~-------~  147 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-------E  147 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-------G
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHH-HHHHHhccccCcccccccceEEEEeecccccc-------h
Confidence            5889999999999888655543 3 45899999999998 9999999876642    357889999876432       1


Q ss_pred             CCCeeEEEEcCCCC
Q 022298          229 DGPFDYMSVTPPYT  242 (299)
Q Consensus       229 ~~~fDlI~iDPPY~  242 (299)
                      ...||.|+++--..
T Consensus       148 ~~~fD~I~~~~~~~  161 (224)
T d1i1na_         148 EAPYDAIHVGAAAP  161 (224)
T ss_dssp             GCCEEEEEECSBBS
T ss_pred             hhhhhhhhhhcchh
Confidence            36899999986443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.57  E-value=1.1e-07  Score=83.02  Aligned_cols=75  Identities=16%  Similarity=0.095  Sum_probs=59.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+|||+|||||.++..++..+ .+|+++|+++..+ +.+++|+..+   +++.++.+|......       ...+||.
T Consensus        70 ~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~-~~A~~~~~~~---~nv~~~~~d~~~g~~-------~~~pfD~  137 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMY-NYASKLLSYY---NNIKLILGDGTLGYE-------EEKPYDR  137 (224)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHH-HHHHHHHTTC---SSEEEEESCGGGCCG-------GGCCEEE
T ss_pred             ccceEEEecCCCCHHHHHHHHHh-cccccccccHHHH-HHHHHHHhcc---cccccccCchhhcch-------hhhhHHH
Confidence            68899999999999997665665 5799999999998 9999987643   358899999765432       1368999


Q ss_pred             EEEcCCC
Q 022298          235 MSVTPPY  241 (299)
Q Consensus       235 I~iDPPY  241 (299)
                      |+++-..
T Consensus       138 Iiv~~a~  144 (224)
T d1vbfa_         138 VVVWATA  144 (224)
T ss_dssp             EEESSBB
T ss_pred             HHhhcch
Confidence            9987543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.54  E-value=1.1e-07  Score=83.11  Aligned_cols=102  Identities=15%  Similarity=0.022  Sum_probs=72.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      .|.-+++..++.+-+....    ..+|.+|||+|||+|.....++.. | ..+|++||+++.++ +.++++++..+   .
T Consensus        52 ~p~rSKlaa~i~~~l~~l~----i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l-~~a~~~a~~~~---~  123 (227)
T d1g8aa_          52 NPNRSKLGAAIMNGLKNFP----IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-RELVPIVEERR---N  123 (227)
T ss_dssp             CTTTCHHHHHHHTTCCCCC----CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHSSCT---T
T ss_pred             CCCccHHHHHHHccccccc----cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHH-HHHHHHHHhcC---C
Confidence            3444566666666554321    136899999999999999887654 4 45799999999998 99999886553   3


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +..+..|+......    ......+|+||+|.|+..
T Consensus       124 ~~~i~~d~~~~~~~----~~~~~~vD~i~~d~~~~~  155 (227)
T d1g8aa_         124 IVPILGDATKPEEY----RALVPKVDVIFEDVAQPT  155 (227)
T ss_dssp             EEEEECCTTCGGGG----TTTCCCEEEEEECCCSTT
T ss_pred             ceEEEEECCCcccc----cccccceEEEEEEccccc
Confidence            56677877544321    112368999999998764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5.3e-07  Score=78.29  Aligned_cols=87  Identities=17%  Similarity=0.088  Sum_probs=69.7

Q ss_pred             CCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      ...++||++|+|+|.-++..+.. . -.+++.+|.+++.. +.+++|++..|+.++++++.+|+.+.+..... .....+
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~-~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~-~~~~~~  135 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-ELGRPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGT  135 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH-TTCTTC
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHH-HHHHHHHHhcCccceEEEEEeehhhcchhhhh-hcccCC
Confidence            35789999999999988866532 1 24799999999997 99999999999999999999999888765421 122468


Q ss_pred             eeEEEEcCCCC
Q 022298          232 FDYMSVTPPYT  242 (299)
Q Consensus       232 fDlI~iDPPY~  242 (299)
                      ||+||+|=-..
T Consensus       136 fD~ifiD~dk~  146 (219)
T d2avda1         136 FDVAVVDADKE  146 (219)
T ss_dssp             EEEEEECSCST
T ss_pred             ccEEEEeCCHH
Confidence            99999996443

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.50  E-value=3.5e-07  Score=79.95  Aligned_cols=84  Identities=10%  Similarity=0.077  Sum_probs=68.3

Q ss_pred             CCCEEEEECCccchHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS-rG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ...+||++|+++|.-++..+. .+ ..+++.+|.|++.+ +.+++|++..|+.++++++.+|+.+.+..+..-....++|
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~-~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-ELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhH-HHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            467999999999988887653 11 34799999999997 9999999999999999999999999987652111113589


Q ss_pred             eEEEEcC
Q 022298          233 DYMSVTP  239 (299)
Q Consensus       233 DlI~iDP  239 (299)
                      |+||+|-
T Consensus       138 D~iFiDa  144 (227)
T d1susa1         138 DFIFVDA  144 (227)
T ss_dssp             SEEEECS
T ss_pred             eEEEecc
Confidence            9999995

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.47  E-value=2.4e-07  Score=79.76  Aligned_cols=100  Identities=10%  Similarity=-0.084  Sum_probs=70.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (299)
Q Consensus       131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~  209 (299)
                      |--+++..++++...  .+   ..++.+|||+|||+|.....++.. +..+|++||+++.++ +.++++++..+   ++.
T Consensus        37 p~rsklaa~i~~g~~--l~---lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i-~~a~~~a~~~~---ni~  107 (209)
T d1nt2a_          37 PWRSKLAAMILKGHR--LK---LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF-EKLLELVRERN---NII  107 (209)
T ss_dssp             GGGCHHHHHHHTSCC--CC---CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH-HHHHHHHHHCS---SEE
T ss_pred             CcchHHHHHHhcccc--CC---CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHH-HHHHHHhhccC---Cce
Confidence            555556555544311  11   135899999999999988766553 555899999999998 99999988764   477


Q ss_pred             EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ++.+|+......    ......+|+||.|-+...
T Consensus       108 ~i~~d~~~~~~~----~~~~~~vd~v~~~~~~~~  137 (209)
T d1nt2a_         108 PLLFDASKPWKY----SGIVEKVDLIYQDIAQKN  137 (209)
T ss_dssp             EECSCTTCGGGT----TTTCCCEEEEEECCCSTT
T ss_pred             EEEeeccCcccc----ccccceEEEEEecccChh
Confidence            888887764321    112357899999976654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.46  E-value=2.8e-07  Score=82.04  Aligned_cols=75  Identities=11%  Similarity=0.064  Sum_probs=60.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+|||+|||+|.+++.++.. + ..+|+++|+++.++ +.+++|.+..+.  +++++++|+.++-        ..++|
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l-~~a~~~~~~~~~--~~~f~~~d~~~~~--------~~~~f   95 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL-AEARELFRLLPY--DSEFLEGDATEIE--------LNDKY   95 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHH-HHHHHHHHSSSS--EEEEEESCTTTCC--------CSSCE
T ss_pred             CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHh-hhhhcccccccc--ccccccccccccc--------ccCCc
Confidence            5789999999999999987653 2 24799999999998 999999988775  3788999987641        13579


Q ss_pred             eEEEEcCC
Q 022298          233 DYMSVTPP  240 (299)
Q Consensus       233 DlI~iDPP  240 (299)
                      |+|++.--
T Consensus        96 D~v~~~~~  103 (281)
T d2gh1a1          96 DIAICHAF  103 (281)
T ss_dssp             EEEEEESC
T ss_pred             eEEEEehh
Confidence            99998753

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=7e-07  Score=80.39  Aligned_cols=72  Identities=18%  Similarity=0.130  Sum_probs=61.6

Q ss_pred             CCCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      .+|.+|||+|||.|++++.++. .|+ +|++|.+|+.-+ +.+++.++..|..+++++..+|...+          .++|
T Consensus        61 ~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~-~~a~~~~~~~g~~~~v~~~~~d~~~~----------~~~f  128 (285)
T d1kpga_          61 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQA-NHVQQLVANSENLRSKRVLLAGWEQF----------DEPV  128 (285)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTCCCCSCEEEEESCGGGC----------CCCC
T ss_pred             CCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHH-HHHHHHHHhhhhhhhhHHHHhhhhcc----------cccc
Confidence            3689999999999999998665 687 799999999998 99999999999988999999997543          3678


Q ss_pred             eEEEE
Q 022298          233 DYMSV  237 (299)
Q Consensus       233 DlI~i  237 (299)
                      |.|+.
T Consensus       129 D~i~s  133 (285)
T d1kpga_         129 DRIVS  133 (285)
T ss_dssp             SEEEE
T ss_pred             cceee
Confidence            87764

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=6.1e-07  Score=76.40  Aligned_cols=92  Identities=13%  Similarity=0.034  Sum_probs=70.9

Q ss_pred             HHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022298          139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (299)
Q Consensus       139 alfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~  217 (299)
                      .+.++|..       .++..+||++||+|..+...+.+ ...+|+++|.|+.++ +.++++++.++  +++.+++++..+
T Consensus        14 evi~~l~~-------~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l-~~a~~~l~~~~--~r~~~~~~~f~~   83 (192)
T d1m6ya2          14 EVIEFLKP-------EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVL-RIAEEKLKEFS--DRVSLFKVSYRE   83 (192)
T ss_dssp             HHHHHHCC-------CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTGGGT--TTEEEEECCGGG
T ss_pred             HHHHhhCC-------CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHH-HHHHHhhcccc--ccccchhHHHhh
Confidence            34577764       36889999999999999888875 345799999999998 99999998775  568899988765


Q ss_pred             HHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          218 FLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       218 ~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      +......  ...++||.|++|-.+.
T Consensus        84 ~~~~~~~--~~~~~vdgIl~DlGvS  106 (192)
T d1m6ya2          84 ADFLLKT--LGIEKVDGILMDLGVS  106 (192)
T ss_dssp             HHHHHHH--TTCSCEEEEEEECSCC
T ss_pred             HHHHHHH--cCCCCcceeeeccchh
Confidence            5332221  1246899999998774

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.3e-07  Score=84.89  Aligned_cols=78  Identities=15%  Similarity=0.014  Sum_probs=59.1

Q ss_pred             CCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHh-------CCC-CcEEEEEcchhhHHHHHhhh
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWT-------GFL-DVSSIHTVRVETFLERAEQF  225 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~-------g~~-~~~~vi~~D~~~~l~~~~~~  225 (299)
                      ++.+|||+|||+|.+.+.++. .|+.+++|||+++.++ +.++++++.+       |.. .+++++++|+.+.--...  
T Consensus       151 ~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~-~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~--  227 (328)
T d1nw3a_         151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPA-KYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER--  227 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHH-HHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHH--
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHH-HHHHHHHHHHHHHhhhccccCCceEEEECcccccccccc--
Confidence            578999999999999998765 4788899999999998 9998887654       222 458999999876421110  


Q ss_pred             cCCCCCeeEEEEc
Q 022298          226 VGKDGPFDYMSVT  238 (299)
Q Consensus       226 ~~~~~~fDlI~iD  238 (299)
                         ....|+|+++
T Consensus       228 ---~~~advi~~~  237 (328)
T d1nw3a_         228 ---IANTSVIFVN  237 (328)
T ss_dssp             ---HHHCSEEEEC
T ss_pred             ---cCcceEEEEc
Confidence               0235888875

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.42  E-value=3.9e-07  Score=81.70  Aligned_cols=80  Identities=21%  Similarity=0.248  Sum_probs=66.3

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh---------CCCCcEEEEEcchhhHHHHHhhh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT---------GFLDVSSIHTVRVETFLERAEQF  225 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~---------g~~~~~~vi~~D~~~~l~~~~~~  225 (299)
                      ...+||-+|+|.|+..-+++..+..+|++||+|+..+ +++++-....         ....+++++.+|+..+++.    
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi-~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~----  146 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVI-MVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN----  146 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHH-HHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHH-HHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc----
Confidence            5789999999999999999888878999999999998 9998643221         2246799999999999864    


Q ss_pred             cCCCCCeeEEEEcCCCC
Q 022298          226 VGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~  242 (299)
                         .++||+|++|.+-.
T Consensus       147 ---~~~yDvIi~D~~~~  160 (276)
T d1mjfa_         147 ---NRGFDVIIADSTDP  160 (276)
T ss_dssp             ---CCCEEEEEEECCCC
T ss_pred             ---cCCCCEEEEeCCCC
Confidence               36899999998754

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.41  E-value=3.5e-07  Score=80.01  Aligned_cols=73  Identities=18%  Similarity=0.131  Sum_probs=60.4

Q ss_pred             CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ...+|||+|||+|.++++++.+. ..+++++|+ +.++ +.+++++...++.++++++.+|+++..         ...||
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~rv~~~~~D~~~~~---------~~~~D  148 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDFFEPL---------PRKAD  148 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCTTSCC---------SSCEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHH-HHHHHHHHHhhcccchhhccccchhhc---------ccchh
Confidence            35799999999999999988763 347999998 5677 899999999999888999999986532         25699


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      +|++-
T Consensus       149 ~v~~~  153 (253)
T d1tw3a2         149 AIILS  153 (253)
T ss_dssp             EEEEE
T ss_pred             heeec
Confidence            99864

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.41  E-value=2.7e-07  Score=81.04  Aligned_cols=77  Identities=18%  Similarity=0.176  Sum_probs=61.5

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ++.+||++|||+|++..+.+.+++ +|++||+|++.+ +.++++...  . ++++++++|+.++.     +  .......
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~-~~l~~~~~~--~-~n~~i~~~D~l~~~-----~--~~~~~~~   88 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLC-KTTENKLVD--H-DNFQVLNKDILQFK-----F--PKNQSYK   88 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHH-HHHHHHTTT--C-CSEEEECCCGGGCC-----C--CSSCCCE
T ss_pred             CCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchH-HHHHHHhhc--c-cchhhhhhhhhhcc-----c--cccccce
Confidence            688999999999999999988865 799999999997 888876532  2 45899999998762     1  1233457


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |+.|.||+-
T Consensus        89 vv~NLPYnI   97 (235)
T d1qama_          89 IFGNIPYNI   97 (235)
T ss_dssp             EEEECCGGG
T ss_pred             eeeeehhhh
Confidence            889999984

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.39  E-value=6.9e-07  Score=76.62  Aligned_cols=76  Identities=8%  Similarity=0.061  Sum_probs=61.8

Q ss_pred             CCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      +..|||+|||+|...++++... -..+++||+++.++ ..+.++++..++.| +.++++|+..++...     ..+.+|.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i-~~a~~~~~~~~l~N-v~~~~~Da~~l~~~~-----~~~~~d~  102 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVI-VTAVQKVKDSEAQN-VKLLNIDADTLTDVF-----EPGEVKR  102 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHSCCSS-EEEECCCGGGHHHHC-----CTTSCCE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHH-HHHHHHHHHHhccC-chhcccchhhhhccc-----Cchhhhc
Confidence            4589999999999999877653 45799999999998 99999999999865 899999998776432     2467886


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++.
T Consensus       103 v~i~  106 (204)
T d2fcaa1         103 VYLN  106 (204)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            6643

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=3.3e-07  Score=88.86  Aligned_cols=102  Identities=13%  Similarity=-0.012  Sum_probs=72.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc----CC---------------CEEEEEeCCH
Q 022298          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----GC---------------SEVHFVEMDP  188 (299)
Q Consensus       128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr----Ga---------------~~V~~VD~n~  188 (299)
                      +.-.|+..|.+.+.+++..       ..+.+|+|++||||.+-++|..+    ..               ..++++|+++
T Consensus       144 GqfyTP~~Iv~~mv~ll~~-------~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~  216 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKP-------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP  216 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH
T ss_pred             chhccccchhHhhhhcccC-------ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCH
Confidence            3456666788888888764       35779999999999999987642    11               1489999999


Q ss_pred             HHHHHHHHHHHHHhCCCCc----EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          189 WVVSNVLIPNLEWTGFLDV----SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       189 ~Al~~~a~~N~~~~g~~~~----~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      .+. ++++-|+-..+....    -.+..++......      ....+||+|+.||||+.
T Consensus       217 ~~~-~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~------~~~~kfD~Ii~NPPfg~  268 (524)
T d2ar0a1         217 GTR-RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG------ENLPKAHIVATNPPFGS  268 (524)
T ss_dssp             HHH-HHHHHHHHTTTCCCBGGGTBSEEESCTTSHHH------HTSCCEEEEEECCCCTT
T ss_pred             HHH-HHHHHHHHhhcccccccccchhhhhhhhhhcc------cccccceeEEecCCccc
Confidence            998 999999987765421    1234444332211      12468999999999975

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.9e-07  Score=81.38  Aligned_cols=78  Identities=21%  Similarity=0.193  Sum_probs=66.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+..||++|+|+|++..+++.+|+ +|++||+|+..+ +.++++.......++++++.+|+.++.         ...++.
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~-~~L~~~~~~~~~~~~~~~i~~D~l~~~---------~~~~~~   89 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLV-AELHKRVQGTPVASKLQVLVGDVLKTD---------LPFFDT   89 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHH-HHHHHHHTTSTTGGGEEEEESCTTTSC---------CCCCSE
T ss_pred             CCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchh-HHHHHHHhhhccccchhhhHHHHhhhh---------hhhhhh
Confidence            578999999999999999998875 799999999997 899988876655567999999987652         245678


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |+.|.||+.
T Consensus        90 vV~NLPY~I   98 (278)
T d1zq9a1          90 CVANLPYQI   98 (278)
T ss_dssp             EEEECCGGG
T ss_pred             hhcchHHHH
Confidence            999999984

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.35  E-value=6e-07  Score=78.36  Aligned_cols=102  Identities=14%  Similarity=-0.009  Sum_probs=71.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (299)
Q Consensus       129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~  207 (299)
                      ..|-.+++..++..-+....    ..++.+|||||||||.....++..+ ...|++||+++.++ +.++++++..+   +
T Consensus        52 w~p~rsklaA~i~~gl~~l~----ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i-~~a~~~a~~~~---n  123 (230)
T d1g8sa_          52 WNPNKSKLAAAIIKGLKVMP----IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM-RELLDACAERE---N  123 (230)
T ss_dssp             CCTTTCHHHHHHHTTCCCCC----CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHH-HHHHHHTTTCT---T
T ss_pred             ECCCccHHHHHHHhhHHhCC----CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHH-HHHHHHHhhhc---c
Confidence            35666677777766554321    1368999999999999998877653 45899999999998 88888765543   3


Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~  242 (299)
                      +..+.+|+.......    .....+|+++.|-...
T Consensus       124 i~~i~~d~~~~~~~~----~~~~~v~~i~~~~~~~  154 (230)
T d1g8sa_         124 IIPILGDANKPQEYA----NIVEKVDVIYEDVAQP  154 (230)
T ss_dssp             EEEEECCTTCGGGGT----TTCCCEEEEEECCCST
T ss_pred             cceEEEeeccCcccc----cccceeEEeeccccch
Confidence            667788877654321    1224577788876544

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=9.3e-07  Score=79.38  Aligned_cols=82  Identities=17%  Similarity=0.186  Sum_probs=62.7

Q ss_pred             CCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ..+.+|||+|||.|+=++.++..+ ...++++|+++.-+ +.+++|++.+|+.+ +.+...|.... ...     ....|
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~-~~l~~~~~r~g~~~-~~~~~~~~~~~-~~~-----~~~~f  172 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMKA-TVKQGDGRYPS-QWC-----GEQQF  172 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCCC-EEEECCTTCTH-HHH-----TTCCE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhh-hhHhhhhhcccccc-eeeeccccccc-hhc-----ccccc
Confidence            368899999999998887766543 35799999999998 99999999999875 44444443322 111     13689


Q ss_pred             eEEEEcCCCCC
Q 022298          233 DYMSVTPPYTA  243 (299)
Q Consensus       233 DlI~iDPPY~~  243 (299)
                      |.|++|||...
T Consensus       173 d~IL~DaPCSg  183 (284)
T d1sqga2         173 DRILLDAPCSA  183 (284)
T ss_dssp             EEEEEECCCCC
T ss_pred             cEEEEeccccc
Confidence            99999999975

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.32  E-value=8.7e-07  Score=80.81  Aligned_cols=79  Identities=18%  Similarity=0.189  Sum_probs=65.9

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC----CCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG----FLDVSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g----~~~~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      ...+||.+|+|.|+..-+++.. +..+|++||+|+..+ +++++.+...+    -..+++++.+|+..+++..      .
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi-~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~------~  149 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELV-EVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------E  149 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------C
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHH-HHHHhcCcccccCccCCCceEEEEchHHHHhhhc------C
Confidence            4689999999999999998875 467899999999998 99999875431    1357999999999998753      4


Q ss_pred             CCeeEEEEcCC
Q 022298          230 GPFDYMSVTPP  240 (299)
Q Consensus       230 ~~fDlI~iDPP  240 (299)
                      ++||+|++|++
T Consensus       150 ~~yDvIi~D~~  160 (312)
T d1uira_         150 ERYDVVIIDLT  160 (312)
T ss_dssp             CCEEEEEEECC
T ss_pred             CcccEEEEeCC
Confidence            78999999973

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.29  E-value=8.2e-07  Score=74.42  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=48.2

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|.+...+     .++++||.|+.++ +.++++        .++++++|+.+..       ..+++||+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~-~~a~~~--------~~~~~~~d~~~l~-------~~~~~fD~   94 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMA-EIARKR--------GVFVLKGTAENLP-------LKDESFDF   94 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHH-HHHHHT--------TCEEEECBTTBCC-------SCTTCEEE
T ss_pred             CCCeEEEECCCCccccccc-----ceEEEEeCChhhc-cccccc--------ccccccccccccc-------cccccccc
Confidence            4668999999999987654     2379999999998 888764        2578889987642       23578999


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++.
T Consensus        95 I~~~   98 (208)
T d1vlma_          95 ALMV   98 (208)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            9864

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=2e-06  Score=75.99  Aligned_cols=70  Identities=9%  Similarity=-0.006  Sum_probs=54.7

Q ss_pred             CCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      .+.+|||+|||+|.+...++.++. .++++||+++.++ +.++++.      .+++++++|+.+.-       -..+.||
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~-~~a~~~~------~~~~~~~~d~~~l~-------~~~~sfD  149 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-KAAAKRY------PQVTFCVASSHRLP-------FSDTSMD  149 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-HHHHHHC------TTSEEEECCTTSCS-------BCTTCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhh-hhhhccc------ccccceeeehhhcc-------CCCCCEE
Confidence            578999999999999988877753 4799999999998 8877652      23678889987642       2357899


Q ss_pred             EEEEc
Q 022298          234 YMSVT  238 (299)
Q Consensus       234 lI~iD  238 (299)
                      +|++.
T Consensus       150 ~v~~~  154 (268)
T d1p91a_         150 AIIRI  154 (268)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            99853

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.27  E-value=1.4e-06  Score=74.66  Aligned_cols=78  Identities=12%  Similarity=0.076  Sum_probs=63.3

Q ss_pred             CCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ...|||+|||+|.+.++.++. .-..+++||+++..+ ..+.++++..+++| +.++++|+..+....     ....+|.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v-~~a~~~~~~~~l~N-i~~~~~da~~l~~~~-----~~~~~~~  104 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL-SYALDKVLEVGVPN-IKLLWVDGSDLTDYF-----EDGEIDR  104 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCCSS-EEEEECCSSCGGGTS-----CTTCCSE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHH-HHHHHhhhhhcccc-ceeeecCHHHHhhhc-----cCCceeh
Confidence            458999999999999998776 345799999999998 89999999999876 899999998765321     3467888


Q ss_pred             EEEcCC
Q 022298          235 MSVTPP  240 (299)
Q Consensus       235 I~iDPP  240 (299)
                      |++.=|
T Consensus       105 i~i~fP  110 (204)
T d1yzha1         105 LYLNFS  110 (204)
T ss_dssp             EEEESC
T ss_pred             hccccc
Confidence            876544

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.26  E-value=1.4e-06  Score=79.23  Aligned_cols=81  Identities=15%  Similarity=0.069  Sum_probs=63.6

Q ss_pred             CCCCEEEEECCccchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP  231 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlS--rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~  231 (299)
                      ..+.+|||+|||.|.=++.++.  .+-..++++|+++.-+ +.+++|++.+|..+ +.+...|...+-       .....
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~-~~l~~~~~r~~~~~-i~~~~~d~~~~~-------~~~~~  185 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-RETRLNLSRLGVLN-VILFHSSSLHIG-------ELNVE  185 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHTCCS-EEEESSCGGGGG-------GGCCC
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHH-HHHHHHHHHHHhhc-cccccccccccc-------ccccc
Confidence            3688999999999986655443  2344699999999998 99999999999976 666667765542       12468


Q ss_pred             eeEEEEcCCCCC
Q 022298          232 FDYMSVTPPYTA  243 (299)
Q Consensus       232 fDlI~iDPPY~~  243 (299)
                      ||.|++|||...
T Consensus       186 fD~ILvDaPCSg  197 (313)
T d1ixka_         186 FDKILLDAPCTG  197 (313)
T ss_dssp             EEEEEEECCTTS
T ss_pred             ccEEEEcccccc
Confidence            999999999875

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=2.1e-06  Score=76.80  Aligned_cols=81  Identities=16%  Similarity=0.190  Sum_probs=66.8

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh-C-C-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT-G-F-LDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~-g-~-~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ...+||-+|.|.|+..-+++.. +..+|++||+|+..+ +.+++....+ + + ..+++++.+|+..++...      .+
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi-~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~------~~  147 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVI-EYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------EN  147 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHH-HHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------CS
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHH-HHHHHhChhhcccccCCCeEEEechHHHHHhhc------CC
Confidence            4689999999999999999875 678999999999998 9998876432 2 1 357899999999998642      47


Q ss_pred             CeeEEEEcCCCC
Q 022298          231 PFDYMSVTPPYT  242 (299)
Q Consensus       231 ~fDlI~iDPPY~  242 (299)
                      +||+|++|++-.
T Consensus       148 ~yDvIi~D~~~p  159 (274)
T d1iy9a_         148 QYDVIMVDSTEP  159 (274)
T ss_dssp             CEEEEEESCSSC
T ss_pred             CCCEEEEcCCCC
Confidence            899999998643

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.13  E-value=4.7e-06  Score=73.15  Aligned_cols=72  Identities=15%  Similarity=0.057  Sum_probs=59.1

Q ss_pred             CCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ..+|||+|||+|.++.+++.+- ..+++++|+ +..+ +.++++++..+..+++.++.+|..+.+         ...||+
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~-~~a~~~~~~~~~~~ri~~~~~d~~~~~---------p~~~D~  150 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEGDFFKPL---------PVTADV  150 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSCC---------SCCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHH-HHHHHHHhhcCCcceeeeeeeeccccc---------cccchh
Confidence            4689999999999999988763 347999998 7777 899999999999888999999876532         245898


Q ss_pred             EEEc
Q 022298          235 MSVT  238 (299)
Q Consensus       235 I~iD  238 (299)
                      |++-
T Consensus       151 v~~~  154 (256)
T d1qzza2         151 VLLS  154 (256)
T ss_dssp             EEEE
T ss_pred             hhcc
Confidence            8864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.13  E-value=1.5e-06  Score=75.51  Aligned_cols=79  Identities=18%  Similarity=0.127  Sum_probs=59.9

Q ss_pred             CCCEEEEECCccchHHHHHHH----cCC---CEEEEEeCCHHHHHHHHHHHHHHh-----CCCCcEEEEEcchhhHHHHH
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS----RGC---SEVHFVEMDPWVVSNVLIPNLEWT-----GFLDVSSIHTVRVETFLERA  222 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS----rGa---~~V~~VD~n~~Al~~~a~~N~~~~-----g~~~~~~vi~~D~~~~l~~~  222 (299)
                      ++.+|||+|||||.++.-++.    .|.   .+|++||++++.+ +.+++|+...     ++ .++.++++|..+...  
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~-~~a~~~l~~~~~~~~~~-~nv~~~~~d~~~~~~--  155 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV-RRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYP--  155 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHH-HHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCG--
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHH-HHHHHhhhhcchhhcCc-cEEEEEecccccccc--
Confidence            578999999999988754433    232   3799999999998 9999997654     33 348899999876432  


Q ss_pred             hhhcCCCCCeeEEEEcCCCC
Q 022298          223 EQFVGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       223 ~~~~~~~~~fDlI~iDPPY~  242 (299)
                           ....||.|+++-...
T Consensus       156 -----~~~~fD~Iiv~~a~~  170 (223)
T d1r18a_         156 -----PNAPYNAIHVGAAAP  170 (223)
T ss_dssp             -----GGCSEEEEEECSCBS
T ss_pred             -----cccceeeEEEEeech
Confidence                 136899999987544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=2.7e-06  Score=76.96  Aligned_cols=130  Identities=11%  Similarity=0.075  Sum_probs=84.9

Q ss_pred             ccccccccceEEEEeeeeCCeEEecCCCCC-CCCCHHHHHHHHHHH-HHhcCCCCCCCCCCEEEEECCccchHHHHHHHc
Q 022298           99 SQEERTTHRLLQVLGGKARRKKLLSPKGMD-VRPMMEVVKGAAFDI-LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR  176 (299)
Q Consensus        99 ~~~p~~~~~~mrIi~Gk~~Gr~L~~p~~~~-~RPttd~Vrealfn~-L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr  176 (299)
                      .++-+...+-+.|..-+-.|+.|....... +--.-..--|.+... +...      -...+||=+|.|.|+..-+++..
T Consensus        37 l~~~~S~yQ~i~i~~s~~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~~------~~pk~VLiiGgG~G~~~r~~l~~  110 (295)
T d1inla_          37 IYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLH------PNPKKVLIIGGGDGGTLREVLKH  110 (295)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEEECTTCHHHHHHTTS
T ss_pred             EEecCCCCcEEEEEEcCCcceEEEECCEEEEecCchhhhhhhhcchhHhhC------CCCceEEEecCCchHHHHHHHhc
Confidence            334444445556655555566655533211 111111223444333 1111      24689999999999999998875


Q ss_pred             -CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298          177 -GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       177 -Ga~~V~~VD~n~~Al~~~a~~N~~~~g--~-~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY  241 (299)
                       +..+|++||+|+..+ +++++-+..+.  + ..+++++.+|+..+++..      .++||+|++|++-
T Consensus       111 ~~~~~i~~VEIDp~Vi-~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~~~yDvIi~D~~d  172 (295)
T d1inla_         111 DSVEKAILCEVDGLVI-EAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------KNEFDVIIIDSTD  172 (295)
T ss_dssp             TTCSEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------SSCEEEEEEEC--
T ss_pred             CCCceEEEecCCHHHH-HHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC------CCCCCEEEEcCCC
Confidence             567899999999998 99988665432  2 357999999999998542      4689999999754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.3e-06  Score=75.21  Aligned_cols=80  Identities=20%  Similarity=0.222  Sum_probs=65.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g--~-~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ..++||-+|.|.|...-+++.. +..+|+.||+|+..+ +++++-...+.  + ..+++++.+|+..+++..      .+
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv-~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~------~~  150 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVI-QVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------QD  150 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------SS
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHH-HHHHhhchhhccccCCCCceEEEccHHHHHhcC------CC
Confidence            4689999999999999998875 678999999999998 99987654321  1 357999999999998642      46


Q ss_pred             CeeEEEEcCCC
Q 022298          231 PFDYMSVTPPY  241 (299)
Q Consensus       231 ~fDlI~iDPPY  241 (299)
                      +||+|++|++-
T Consensus       151 ~yDvIi~D~~~  161 (285)
T d2o07a1         151 AFDVIITDSSD  161 (285)
T ss_dssp             CEEEEEEECC-
T ss_pred             CCCEEEEcCCC
Confidence            89999999853

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.06  E-value=4.2e-06  Score=76.32  Aligned_cols=80  Identities=21%  Similarity=0.247  Sum_probs=65.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g--~-~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ...+||-+|.|.|++.-|+++. +..+|++||+|+..+ +++++-+..+.  + ..+++++.+|+..+++..      .+
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv-~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~------~~  178 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI-DVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------KN  178 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH-HHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------TT
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHH-HHHHhhchhhccccCCCCeEEEEchHHHHHHhC------CC
Confidence            4689999999999999999885 567899999999998 99988654322  1 257899999999999753      47


Q ss_pred             CeeEEEEcCCC
Q 022298          231 PFDYMSVTPPY  241 (299)
Q Consensus       231 ~fDlI~iDPPY  241 (299)
                      +||+|++|++-
T Consensus       179 ~yDvII~D~~d  189 (312)
T d2b2ca1         179 EFDVIITDSSD  189 (312)
T ss_dssp             CEEEEEECCC-
T ss_pred             CCCEEEEcCCC
Confidence            89999999764

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=7.9e-06  Score=72.18  Aligned_cols=95  Identities=14%  Similarity=0.048  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (299)
Q Consensus       135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D  214 (299)
                      .+.+.+.+.+..       .++..||++|+|+|++.-+++.++. +|++||+|++.+ +.+++...   ..++++++++|
T Consensus         8 ~~~~~Iv~~~~~-------~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~-~~L~~~~~---~~~~~~ii~~D   75 (252)
T d1qyra_           8 FVIDSIVSAINP-------QKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLA-ARLQTHPF---LGPKLTIYQQD   75 (252)
T ss_dssp             HHHHHHHHHHCC-------CTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHH-HHHHTCTT---TGGGEEEECSC
T ss_pred             HHHHHHHHhcCC-------CCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchh-HHHHHHhh---hccchhHHhhh
Confidence            345555555543       3578999999999999998888865 699999999987 78776432   22468999999


Q ss_pred             hhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          215 VETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       215 ~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      +.++--..  +.......-.|+.|.||+.
T Consensus        76 ~l~~~~~~--~~~~~~~~~~vvgNlPY~I  102 (252)
T d1qyra_          76 AMTFNFGE--LAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             GGGCCHHH--HHHHHTSCEEEEEECCTTT
T ss_pred             hhhhcccc--cccccCCCeEEEecchHHH
Confidence            98652110  0000123347889999995

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.02  E-value=2.7e-07  Score=81.58  Aligned_cols=77  Identities=13%  Similarity=0.141  Sum_probs=61.6

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      .+.+|||+|||+|++...++.+|+ +|++||+|+..+ +.++++..   ...+++++++|+.++-       -....++.
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~-~~l~~~~~---~~~n~~ii~~D~l~~~-------~~~~~~~~   96 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLF-NLSSEKLK---LNTRVTLIHQDILQFQ-------FPNKQRYK   96 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSS-SSSSCTTT---TCSEEEECCSCCTTTT-------CCCSSEEE
T ss_pred             CCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccch-hhhhhhhh---hccchhhhhhhhhccc-------cccceeee
Confidence            578999999999999998888865 799999999987 77765542   2346899999998762       12356788


Q ss_pred             EEEcCCCCC
Q 022298          235 MSVTPPYTA  243 (299)
Q Consensus       235 I~iDPPY~~  243 (299)
                      |+.|.||+.
T Consensus        97 vv~NLPY~I  105 (245)
T d1yuba_          97 IVGNIPYHL  105 (245)
T ss_dssp             EEEECCSSS
T ss_pred             Eeeeeehhh
Confidence            999999986

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.5e-06  Score=74.83  Aligned_cols=50  Identities=14%  Similarity=0.069  Sum_probs=44.0

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF  204 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~  204 (299)
                      .++.+|||+|||+|.+++.+++.++.+|+++|+++.++ +.++++++..+.
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i-~~a~~~~~~~~~   99 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNR-EELEKWLKKEPG   99 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHHTCTT
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHH-HHHHHHHhhccc
Confidence            46789999999999998877788888899999999998 999999876543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=6.6e-06  Score=77.47  Aligned_cols=47  Identities=23%  Similarity=0.280  Sum_probs=42.0

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT  202 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~  202 (299)
                      ++.+|||||||+|.+.+.++.. |+.+|+|||+++.++ +.+++|++.+
T Consensus       216 pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i-~~Ak~~~~e~  263 (406)
T d1u2za_         216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDAS-DLTILQYEEL  263 (406)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHH-HHHHHHHHHH
T ss_pred             CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHH
Confidence            6789999999999999987754 777899999999998 9999998764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.92  E-value=1.4e-05  Score=71.99  Aligned_cols=81  Identities=21%  Similarity=0.217  Sum_probs=65.7

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC---CCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG---FLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g---~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ...+||=+|.|.|+..-|++.. +..+|++||+|+..+ +++++-...+.   -..+++++.+|+..++...     ..+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi-~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~-----~~~  153 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVV-DVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----AEG  153 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----CTT
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHH-HHHHHhchhhhccccCCCcEEEEccHHHHHhhc-----ccc
Confidence            4679999999999999998875 667899999999998 99988653321   1367999999999998643     235


Q ss_pred             CeeEEEEcCCC
Q 022298          231 PFDYMSVTPPY  241 (299)
Q Consensus       231 ~fDlI~iDPPY  241 (299)
                      +||+|++|.+-
T Consensus       154 ~yDvIi~D~~d  164 (290)
T d1xj5a_         154 SYDAVIVDSSD  164 (290)
T ss_dssp             CEEEEEECCCC
T ss_pred             CccEEEEcCCC
Confidence            89999999864

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.9e-05  Score=69.00  Aligned_cols=79  Identities=14%  Similarity=0.162  Sum_probs=53.4

Q ss_pred             CEEEEECCccchHHHHHHHc------CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCc--EEEEEcchhhHHHHHhhhcC
Q 022298          157 GRWLDLYSGTGSVGIEAISR------GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDV--SSIHTVRVETFLERAEQFVG  227 (299)
Q Consensus       157 ~~VLDLfaGSGalgIEAlSr------Ga-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~--~~vi~~D~~~~l~~~~~~~~  227 (299)
                      .+|||+|||+|.+....+..      +. ..+++||.|+.++ +.++++++.....+.  ..+.+.++..+..... ...
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  119 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI-AKYKELVAKISNLENVKFAWHKETSSEYQSRML-EKK  119 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHH-HHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT-TSS
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHH-HHHHHHHhhccccccccccchhhhhhhhcchhc-ccC
Confidence            47999999999988765432      21 2589999999998 899998765433232  3455666665543321 112


Q ss_pred             CCCCeeEEEE
Q 022298          228 KDGPFDYMSV  237 (299)
Q Consensus       228 ~~~~fDlI~i  237 (299)
                      ..++||+|++
T Consensus       120 ~~~~fD~I~~  129 (280)
T d1jqea_         120 ELQKWDFIHM  129 (280)
T ss_dssp             SCCCEEEEEE
T ss_pred             CCCceeEEEE
Confidence            3578999997

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.83  E-value=2e-05  Score=67.23  Aligned_cols=57  Identities=19%  Similarity=0.096  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE  200 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~  200 (299)
                      ..+.+-++....        .+|..|||.|||||+.+++|...| .+.+++|++++.+ +++++.++
T Consensus       199 ~~L~~~lI~~~s--------~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~-~~a~~Rl~  255 (256)
T d1g60a_         199 RDLIERIIRASS--------NPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYV-NQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHHC--------CTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHH
T ss_pred             hhHHHHHHHHhC--------CCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHH-HHHHHHHc
Confidence            445555555554        368899999999999999998887 4799999999997 99998775

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.80  E-value=1.6e-05  Score=70.04  Aligned_cols=72  Identities=15%  Similarity=0.170  Sum_probs=56.8

Q ss_pred             EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      +|||||||.|.+.+-+-..|...+.++|+|+.|+ +..+.|.     .+  .++.+|+.++...      .-...|+++.
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~-~~~~~N~-----~~--~~~~~Di~~~~~~------~~~~~dll~~   67 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIW-KTYESNH-----SA--KLIKGDISKISSD------EFPKCDGIIG   67 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHH-HHHHHHC-----CS--EEEESCTTTSCGG------GSCCCSEEEE
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHHC-----CC--CCccCChhhCCHh------HcccccEEee
Confidence            6999999999998765556888888999999997 8888884     22  4678998876321      1257899999


Q ss_pred             cCCCCC
Q 022298          238 TPPYTA  243 (299)
Q Consensus       238 DPPY~~  243 (299)
                      -||...
T Consensus        68 g~PCq~   73 (324)
T d1dcta_          68 GPPCQS   73 (324)
T ss_dssp             CCCCTT
T ss_pred             cccccc
Confidence            999874

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=8.7e-05  Score=63.46  Aligned_cols=90  Identities=22%  Similarity=0.212  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl-SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~  212 (299)
                      +.+.+.+++.+....    .+.+.+++|+|+|.|-=|+-.+ .+...+++.||.+.+.+ ..+++=++.+++.| +++++
T Consensus        48 ~~~~rHi~DSl~~~~----~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~-~FL~~~~~~L~L~n-v~v~~  121 (207)
T d1jsxa_          48 EMLVRHILDSIVVAP----YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLEN-IEPVQ  121 (207)
T ss_dssp             CHHHHHHHHHHHHGG----GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCSS-EEEEE
T ss_pred             HHHHHHhcchHhhhh----hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHH-HHHHHHHHHcCCcc-eeeec
Confidence            446677777766431    1457899999999998888754 34556899999999997 89999899999865 89999


Q ss_pred             cchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          213 VRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       213 ~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      .+++++.        ...+||+|++
T Consensus       122 ~R~E~~~--------~~~~fD~V~s  138 (207)
T d1jsxa_         122 SRVEEFP--------SEPPFDGVIS  138 (207)
T ss_dssp             CCTTTSC--------CCSCEEEEEC
T ss_pred             cchhhhc--------cccccceehh
Confidence            9988752        2357999986

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.68  E-value=2.8e-05  Score=69.22  Aligned_cols=75  Identities=23%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ..+.+|||||||.|.+.+.+-..|..-|.++|+++.|+ +..+.|.-     +   ..++|+.++...      .-..+|
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~-~~~~~N~~-----~---~~~~Di~~~~~~------~~~~~D   73 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQ-EVYEMNFG-----E---KPEGDITQVNEK------TIPDHD   73 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHH-HHHHHHHS-----C---CCBSCGGGSCGG------GSCCCS
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHH-HHHHHHCC-----C---CCcCchhcCchh------hcceee
Confidence            35789999999999999876667888788899999997 99999962     1   124777765321      125799


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +++.-||+..
T Consensus        74 ll~ggpPCq~   83 (327)
T d2c7pa1          74 ILCAGFPCQA   83 (327)
T ss_dssp             EEEEECCCTT
T ss_pred             eeecccccch
Confidence            9999999874

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.68  E-value=3.8e-05  Score=66.26  Aligned_cols=60  Identities=18%  Similarity=0.216  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g  203 (299)
                      ..+.+-++....        .++..|||+|||||+.+++|...|- +.+++|+++..+ +.+++.++...
T Consensus       194 ~~L~~~~I~~~s--------~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~-~~a~~Ri~~~~  253 (279)
T d1eg2a_         194 AAVIERLVRALS--------HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFK-EYYQKQLTFLQ  253 (279)
T ss_dssp             HHHHHHHHHHHS--------CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHH-HHHHHHHHHC-
T ss_pred             hhHHHHHHHhhc--------CCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHH-HHHHHHHHHhh
Confidence            445555555543        3688999999999999999988874 799999999998 99999988653

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.62  E-value=0.00032  Score=58.62  Aligned_cols=87  Identities=15%  Similarity=0.095  Sum_probs=64.7

Q ss_pred             HHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 022298          141 FDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (299)
Q Consensus       141 fn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~  220 (299)
                      .+.|..       .++..++|+.+|.|..+.+.|.++. +|+++|.|+.|+ +.+++-     ..+++.+++++..++..
T Consensus        11 l~~l~~-------~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai-~~a~~~-----~~~~~~~~~~~f~~~~~   76 (182)
T d1wg8a2          11 LDLLAV-------RPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAV-ARAKGL-----HLPGLTVVQGNFRHLKR   76 (182)
T ss_dssp             HHHHTC-------CTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHT-----CCTTEEEEESCGGGHHH
T ss_pred             HHhcCC-------CCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHH-HHHhhc-----cccceeEeehHHHHHHH
Confidence            366654       3688999999999999999998865 799999999997 766542     23568889987666544


Q ss_pred             HHhhhcCCCCCeeEEEEcCCCCC
Q 022298          221 RAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       221 ~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ....+  ..+.+|.|++|--+..
T Consensus        77 ~l~~~--~~~~vdgIl~DLGvSs   97 (182)
T d1wg8a2          77 HLAAL--GVERVDGILADLGVSS   97 (182)
T ss_dssp             HHHHT--TCSCEEEEEEECSCCH
T ss_pred             HHHHc--CCCccCEEEEEccCCH
Confidence            33211  2367999999986643

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.58  E-value=3.8e-05  Score=67.25  Aligned_cols=46  Identities=17%  Similarity=0.145  Sum_probs=40.1

Q ss_pred             CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~  202 (299)
                      ++..|||.|||||+.+++|...|- +.+++|+|++++ +.+++-+...
T Consensus       250 ~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~-~~a~~Rl~~~  295 (320)
T d1booa_         250 PDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYV-AASAFRFLDN  295 (320)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHGGGSCS
T ss_pred             CCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHH-HHHHHHHHhc
Confidence            688999999999999999999885 699999999998 8887765443

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=8.7e-05  Score=65.74  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=52.4

Q ss_pred             CCEEEEECCccchHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCS--EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD  233 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~--~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD  233 (299)
                      ..+|+|||||.|.+.+.+-..|..  -|.++|+++.|+ +..+.|..     + ..++.+|+.++.....    ....+|
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~-~~~~~n~~-----~-~~~~~~di~~~~~~~~----~~~~~D   70 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVAN-EVYKYNFP-----H-TQLLAKTIEGITLEEF----DRLSFD   70 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHCT-----T-SCEECSCGGGCCHHHH----HHHCCS
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHH-HHHHHHCC-----C-CCcccCchhhCCHhHc----CCCCcc
Confidence            458999999999887644344653  478999999997 88888842     2 3456678775543211    013689


Q ss_pred             EEEEcCCCCC
Q 022298          234 YMSVTPPYTA  243 (299)
Q Consensus       234 lI~iDPPY~~  243 (299)
                      +++.-||...
T Consensus        71 ll~ggpPCq~   80 (343)
T d1g55a_          71 MILMSPPCQP   80 (343)
T ss_dssp             EEEECCC---
T ss_pred             EEEeeccccc
Confidence            9999999864

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=2.8e-05  Score=68.03  Aligned_cols=47  Identities=11%  Similarity=0.021  Sum_probs=40.4

Q ss_pred             CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH
Q 022298          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW  201 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~  201 (299)
                      ..+.++||+|||+|.+.+..++++..+|+++|.++.++ +.++++++.
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i-~~~~~~~~~   99 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR-QELGRWLQE   99 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH-HHHHHHHTT
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHH-HHHHHHHhc
Confidence            57899999999999888665666667899999999998 999988754

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.36  E-value=0.00073  Score=58.81  Aligned_cols=97  Identities=18%  Similarity=0.090  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (299)
Q Consensus       134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl-SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~  212 (299)
                      +.+.+.+++.++...-.+ .....+++|+|+|.|-=||-.+ -+...+++.||.+.+-+ ..++.=++.+++.+ +.+++
T Consensus        50 ~i~~rHi~DSl~~~~~~~-~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~-~FL~~v~~~L~L~n-~~i~~  126 (239)
T d1xdza_          50 EVYLKHFYDSITAAFYVD-FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLEN-TTFCH  126 (239)
T ss_dssp             HHHHHTHHHHHGGGGTSC-GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCSS-EEEEE
T ss_pred             HHHHHhccchhhhhhhhc-ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH-HHHHHHHHHhCCCC-cEEEe
Confidence            456677888775421100 0136799999999998888754 46667899999999997 89999999999976 78999


Q ss_pred             cchhhHHHHHhhhcCCCCCeeEEEE
Q 022298          213 VRVETFLERAEQFVGKDGPFDYMSV  237 (299)
Q Consensus       213 ~D~~~~l~~~~~~~~~~~~fDlI~i  237 (299)
                      .+++.+....    ...++||+|++
T Consensus       127 ~R~E~~~~~~----~~~~~~D~v~s  147 (239)
T d1xdza_         127 DRAETFGQRK----DVRESYDIVTA  147 (239)
T ss_dssp             SCHHHHTTCT----TTTTCEEEEEE
T ss_pred             ehhhhccccc----cccccceEEEE
Confidence            9988763211    12368999996

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.00086  Score=60.49  Aligned_cols=60  Identities=17%  Similarity=0.117  Sum_probs=49.1

Q ss_pred             CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l  219 (299)
                      ++..|||+|.|.|++..+.+.+ ++.+|+++|+|+..+ +.+++...    .++++++++|+..+.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~-~~L~~~~~----~~~~~ii~~D~l~~~  103 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY-KFLNAKFE----GSPLQILKRDPYDWS  103 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH-HHHHHHTT----TSSCEEECSCTTCHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHhcc----CCCcEEEeCchhhcc
Confidence            5678999999999999988877 467899999999987 87765432    245889999988764

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=95.99  E-value=0.0055  Score=54.04  Aligned_cols=77  Identities=17%  Similarity=0.202  Sum_probs=58.3

Q ss_pred             EEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298          160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP  239 (299)
Q Consensus       160 LDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP  239 (299)
                      +..|.||-.++- .+.|..++.+++|+.+... +.+++|+.   ...++.+.+.|.++.+...   .-+.++=-+|++||
T Consensus        87 l~~YPGSP~ia~-~llR~~Drl~l~ELHp~e~-~~L~~~~~---~~~~~~v~~~DG~~~l~al---lPP~~rRgLVLIDP  158 (271)
T d2oo3a1          87 LSYYPGSPYFAI-NQLRSQDRLYLCELHPTEY-NFLLKLPH---FNKKVYVNHTDGVSKLNAL---LPPPEKRGLIFIDP  158 (271)
T ss_dssp             CCEEECHHHHHH-HHSCTTSEEEEECCSHHHH-HHHTTSCC---TTSCEEEECSCHHHHHHHH---CSCTTSCEEEEECC
T ss_pred             cCcCCCCHHHHH-HhCCCCCceEEeecCHHHH-HHHHHHhc---cCCCceEEcCchHHHHHhh---CCCCCCceEEEecC
Confidence            467889888765 4556677899999999997 88888753   3356899999999888654   12234446999999


Q ss_pred             CCCCC
Q 022298          240 PYTAV  244 (299)
Q Consensus       240 PY~~~  244 (299)
                      ||...
T Consensus       159 pYE~k  163 (271)
T d2oo3a1         159 SYERK  163 (271)
T ss_dssp             CCCST
T ss_pred             CcCCH
Confidence            99974

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.43  E-value=0.014  Score=50.03  Aligned_cols=63  Identities=14%  Similarity=-0.052  Sum_probs=45.7

Q ss_pred             CCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ..+|||+|||+|.++++++.+ ...+++..|. +..+ +       ..+..++++++.+|+++.          ...+|+
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-~-------~~~~~~rv~~~~gD~f~~----------~p~aD~  141 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-E-------NLSGSNNLTYVGGDMFTS----------IPNADA  141 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-T-------TCCCBTTEEEEECCTTTC----------CCCCSE
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHH-H-------hCcccCceEEEecCcccC----------CCCCcE
Confidence            468999999999999998876 2347999998 4443 3       234457899999997642          134677


Q ss_pred             EEE
Q 022298          235 MSV  237 (299)
Q Consensus       235 I~i  237 (299)
                      +++
T Consensus       142 ~~l  144 (244)
T d1fp2a2         142 VLL  144 (244)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.34  E-value=0.019  Score=49.25  Aligned_cols=63  Identities=16%  Similarity=-0.013  Sum_probs=45.3

Q ss_pred             CCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298          156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY  234 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl  234 (299)
                      ..+|||+|||+|.++++++.+ ..-+++..|+ |..+ +       ..+..++++++.+|+++.+          ...|+
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-~-------~~~~~~ri~~~~gd~~~~~----------p~~D~  142 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-E-------NAPPLSGIEHVGGDMFASV----------PQGDA  142 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-T-------TCCCCTTEEEEECCTTTCC----------CCEEE
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhh-h-------ccCCCCCeEEecCCccccc----------ccceE
Confidence            478999999999999998876 2347899998 3333 2       2344577999999976531          34587


Q ss_pred             EEE
Q 022298          235 MSV  237 (299)
Q Consensus       235 I~i  237 (299)
                      +++
T Consensus       143 ~~l  145 (244)
T d1fp1d2         143 MIL  145 (244)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.022  Score=46.70  Aligned_cols=76  Identities=9%  Similarity=-0.041  Sum_probs=51.6

Q ss_pred             CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhh-hcCCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ-FVGKDGP  231 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~-~~~~~~~  231 (299)
                      .+.+||||||+.|++.-.++.+  ....|+++|+.+..            .+. ...++++|..+....... ......+
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~------------~i~-~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD------------PIV-GVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC------------CCT-TEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc------------ccC-CceEeecccccchhhhhhhhhccCcc
Confidence            5789999999999999877764  34679999987632            233 367888887643321110 0112468


Q ss_pred             eeEEEEcCCCCC
Q 022298          232 FDYMSVTPPYTA  243 (299)
Q Consensus       232 fDlI~iDPPY~~  243 (299)
                      ||+|+.|--.+.
T Consensus        89 ~DlVlSD~ap~~  100 (180)
T d1ej0a_          89 VQVVMSDMAPNM  100 (180)
T ss_dssp             EEEEEECCCCCC
T ss_pred             eeEEEecccchh
Confidence            999999976554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.78  E-value=0.011  Score=49.51  Aligned_cols=31  Identities=23%  Similarity=0.536  Sum_probs=25.8

Q ss_pred             EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      +++++|..++++.+     +++.+|+||+||||+.+
T Consensus         6 ~i~~gDcle~l~~l-----pd~sVdliitdPPY~~~   36 (256)
T d1g60a_           6 KIHQMNCFDFLDQV-----ENKSVQLAVIDPPYNLS   36 (256)
T ss_dssp             SEEECCHHHHHHHS-----CTTCEEEEEECCCCSSC
T ss_pred             EEEeccHHHHHhhC-----cCCCcCEEEECCCCCCC
Confidence            37999999998765     35789999999999853

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.09  E-value=0.012  Score=50.55  Aligned_cols=32  Identities=16%  Similarity=0.262  Sum_probs=26.5

Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV  244 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~  244 (299)
                      -+++++|..++++.+     ..+++|+|++||||+.+
T Consensus        13 ~~l~~GD~le~l~~l-----~~~sVdli~tDPPY~~~   44 (320)
T d1booa_          13 GSMYIGDSLELLESF-----PEESISLVMTSPPFALQ   44 (320)
T ss_dssp             EEEEESCHHHHGGGS-----CSSCEEEEEECCCCSSS
T ss_pred             CEEEehhHHHHHhhC-----ccCCCCEEEECCCCcCC
Confidence            378999999988654     35789999999999863

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.59  E-value=0.021  Score=48.21  Aligned_cols=31  Identities=16%  Similarity=0.299  Sum_probs=25.3

Q ss_pred             EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298          208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~  243 (299)
                      ..++.+|..+.++.+     +.+++|+||+||||+.
T Consensus         5 ~~~~~~D~le~l~~l-----~d~SIDliitDPPYn~   35 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKL-----PDDSVQLIICDPPYNI   35 (279)
T ss_dssp             EEEEECCHHHHHHTS-----CTTCEEEEEECCCSBC
T ss_pred             ceEEechHHHHHhhC-----cCCCccEEEECCCCCC
Confidence            346789999988754     3678999999999985

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.31  E-value=0.096  Score=41.85  Aligned_cols=74  Identities=14%  Similarity=0.085  Sum_probs=44.9

Q ss_pred             CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE---cchhhHHHHHhhhcC
Q 022298          155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~---~D~~~~l~~~~~~~~  227 (299)
                      .+.+||-.||  |.+|+.++    .+|+.+|+++|.+++.+ +.+++    +|..   .++.   .+..+..+....+. 
T Consensus        28 ~G~~VlV~Ga--G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~-   96 (182)
T d1vj0a2          28 AGKTVVIQGA--GPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAEE----IGAD---LTLNRRETSVEERRKAIMDIT-   96 (182)
T ss_dssp             BTCEEEEECC--SHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHHH----TTCS---EEEETTTSCHHHHHHHHHHHT-
T ss_pred             CCCEEEEECC--Cccchhheecccccccccccccccccccc-ccccc----ccce---EEEeccccchHHHHHHHHHhh-
Confidence            5889998866  45665543    47988899999999987 77754    4642   1232   23333332222111 


Q ss_pred             CCCCeeEEEEcC
Q 022298          228 KDGPFDYMSVTP  239 (299)
Q Consensus       228 ~~~~fDlI~iDP  239 (299)
                      ....+|+||-.-
T Consensus        97 ~~~g~Dvvid~v  108 (182)
T d1vj0a2          97 HGRGADFILEAT  108 (182)
T ss_dssp             TTSCEEEEEECS
T ss_pred             CCCCceEEeecC
Confidence            234699987443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.3  Score=41.26  Aligned_cols=87  Identities=10%  Similarity=0.005  Sum_probs=59.0

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~  226 (299)
                      ++++.+|=-||++| +|.+    ++..|+ +|+.++.|+..+ +-+.+-++..+..+++..+++|+.+...-   .....
T Consensus         8 lk~Kv~lITGas~G-IG~aiA~~la~~G~-~Vv~~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~   84 (257)
T d1xg5a_           8 WRDRLALVTGASGG-IGAAVARALVQQGL-KVVGCARTVGNI-EELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR   84 (257)
T ss_dssp             GTTCEEEEESTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            45788888887765 4544    446788 699999999987 77777777777666788889987643211   01111


Q ss_pred             CCCCCeeEEEEcCCCCC
Q 022298          227 GKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY~~  243 (299)
                      ...+..|+++.+.....
T Consensus        85 ~~~g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          85 SQHSGVDICINNAGLAR  101 (257)
T ss_dssp             HHHCCCSEEEECCCCCC
T ss_pred             HhcCCCCEEEecccccC
Confidence            12367999998876543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.38  Score=40.48  Aligned_cols=87  Identities=9%  Similarity=-0.018  Sum_probs=61.5

Q ss_pred             CCCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298          153 SLRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV  226 (299)
Q Consensus       153 ~~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~  226 (299)
                      ++.|+.+|=-||++|   .++.++++.|+ +|+.+|.|++.+ +.+.++++..+.  ++..+.+|+.+...-.   ....
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l-~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~i~   79 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGL-EETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVK   79 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHH
Confidence            467888888888777   45555667898 599999999998 888888887653  4778889876553211   1111


Q ss_pred             CCCCCeeEEEEcCCCCC
Q 022298          227 GKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY~~  243 (299)
                      ...+..|+++.+--...
T Consensus        80 ~~~g~idilinnag~~~   96 (244)
T d1yb1a_          80 AEIGDVSILVNNAGVVY   96 (244)
T ss_dssp             HHTCCCSEEEECCCCCC
T ss_pred             HHcCCCceeEeeccccc
Confidence            23467999998876554

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.25  E-value=0.5  Score=39.89  Aligned_cols=84  Identities=11%  Similarity=0.015  Sum_probs=54.6

Q ss_pred             CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcC
Q 022298          154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVG  227 (299)
Q Consensus       154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~  227 (299)
                      ++++++|=-|+++|   +++..+++.|+ +|+.+|.+.+.+ +.+.+.+...+...++..+.+|+.+...-   ......
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l-~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   79 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGL-EASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   79 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence            46778887777666   34445567898 699999999987 77766666555444577888887543211   111111


Q ss_pred             CCCCeeEEEEcC
Q 022298          228 KDGPFDYMSVTP  239 (299)
Q Consensus       228 ~~~~fDlI~iDP  239 (299)
                      ..++.|+++.|-
T Consensus        80 ~~G~iDiLVnnA   91 (258)
T d1iy8a_          80 RFGRIDGFFNNA   91 (258)
T ss_dssp             HHSCCSEEEECC
T ss_pred             HhCCCCEEEECC
Confidence            236789998764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.17  E-value=0.95  Score=36.11  Aligned_cols=77  Identities=10%  Similarity=0.000  Sum_probs=49.0

Q ss_pred             CCCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHhhhc
Q 022298          153 SLRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQFV  226 (299)
Q Consensus       153 ~~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~--l~~~~~~~  226 (299)
                      ++.++++|=.|++.| +|.+    ++.+|+ +|+.++.|.+.+ +.+.+.+....-   +.+...|+.+.  +...    
T Consensus        20 ~l~gK~vlItGasgG-IG~~ia~~la~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~----   89 (191)
T d1luaa1          20 SVKGKKAVVLAGTGP-VGMRSAALLAGEGA-EVVLCGRKLDKA-QAAADSVNKRFK---VNVTAAETADDASRAEA----   89 (191)
T ss_dssp             CCTTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHHHHHHHT---CCCEEEECCSHHHHHHH----
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHHhhcc-chhhcccchHHH-HHHHHHHHhccc---hhhhhhhcccHHHHHHH----
Confidence            478999997776554 4544    456787 699999999987 777777655422   12233443322  2221    


Q ss_pred             CCCCCeeEEEEcCCC
Q 022298          227 GKDGPFDYMSVTPPY  241 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY  241 (299)
                        -+..|++|.+-+.
T Consensus        90 --~~~iDilin~Ag~  102 (191)
T d1luaa1          90 --VKGAHFVFTAGAI  102 (191)
T ss_dssp             --TTTCSEEEECCCT
T ss_pred             --hcCcCeeeecCcc
Confidence              2568999988654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.54  E-value=0.21  Score=39.89  Aligned_cols=78  Identities=17%  Similarity=0.174  Sum_probs=43.2

Q ss_pred             CCCEEEEECCcc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298          155 RPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF  232 (299)
Q Consensus       155 ~~~~VLDLfaGS-GalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f  232 (299)
                      ++.+||=.|||. |.+++-++. +|+.+|+++|.+++.. +.++    .+|...   ++..+-.++.+....+. .+..+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~-~~a~----~lGa~~---~i~~~~~~~~~~v~~~t-~g~G~   97 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICV-EAAK----FYGATD---ILNYKNGHIEDQVMKLT-NGKGV   97 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHH-HHHH----HHTCSE---EECGGGSCHHHHHHHHT-TTSCE
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhH-HHHH----hhCccc---cccccchhHHHHHHHHh-hccCc
Confidence            577787676543 333333333 5888899999999876 6664    466532   33322222222221111 23459


Q ss_pred             eEEEEcCCC
Q 022298          233 DYMSVTPPY  241 (299)
Q Consensus       233 DlI~iDPPY  241 (299)
                      |+||-.-+-
T Consensus        98 D~vid~~g~  106 (174)
T d1jqba2          98 DRVIMAGGG  106 (174)
T ss_dssp             EEEEECSSC
T ss_pred             ceEEEccCC
Confidence            998765543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.13  E-value=0.77  Score=38.46  Aligned_cols=85  Identities=15%  Similarity=0.069  Sum_probs=56.9

Q ss_pred             CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~  226 (299)
                      ++++.+|=-|+++| +|.+.    +..|+ +|+.+|.|.+.+ +-+.+.++..+.  ++..+.+|+.+...-   .....
T Consensus         8 lenKvalITGas~G-IG~a~a~~la~~Ga-~V~~~~r~~~~l-~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~   82 (251)
T d2c07a1           8 GENKVALVTGAGRG-IGREIAKMLAKSVS-HVICISRTQKSC-DSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKIL   82 (251)
T ss_dssp             CSSCEEEEESTTSH-HHHHHHHHHTTTSS-EEEEEESSHHHH-HHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHH
Confidence            56788887776655 56553    34687 699999999987 777777776653  477888887643211   11111


Q ss_pred             CCCCCeeEEEEcCCCCC
Q 022298          227 GKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY~~  243 (299)
                      ...++.|+++.+.....
T Consensus        83 ~~~g~iDilvnnag~~~   99 (251)
T d2c07a1          83 TEHKNVDILVNNAGITR   99 (251)
T ss_dssp             HHCSCCCEEEECCCCCC
T ss_pred             HhcCCceeeeecccccc
Confidence            22468999998876543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=89.72  E-value=0.36  Score=43.99  Aligned_cols=50  Identities=18%  Similarity=0.128  Sum_probs=41.2

Q ss_pred             CCCEEEEECCccchHHHHHHH--cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS--RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS--rG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~  205 (299)
                      ++..++|+||-.|..++.++.  .+ ..+|+++|-++... +.+++|++.+...
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~-~~LkkNi~~n~~~  264 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINL-QTLQNVLRRYTDT  264 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHH-HHHHHHHHHTTTS
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHH-HHHHHHHHhcccc
Confidence            567999999999988876554  23 35899999999998 9999999987653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.52  E-value=0.6  Score=39.63  Aligned_cols=84  Identities=12%  Similarity=0.048  Sum_probs=56.1

Q ss_pred             CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHH---Hhhhc
Q 022298          154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLER---AEQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~---~~~~~  226 (299)
                      ++|+++|=-|+++|   +++..++..|+ +|+.+|.|.+.+ +-+.+.++..+.. .++..+.+|+.+.-.-   .....
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   79 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRL-EETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL   79 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence            46778887777665   33344556788 599999999987 8888888887654 3578888987543211   01111


Q ss_pred             CCCCCeeEEEEcC
Q 022298          227 GKDGPFDYMSVTP  239 (299)
Q Consensus       227 ~~~~~fDlI~iDP  239 (299)
                      ...++.|+++.+.
T Consensus        80 ~~~G~iDilVnnA   92 (274)
T d1xhla_          80 AKFGKIDILVNNA   92 (274)
T ss_dssp             HHHSCCCEEEECC
T ss_pred             HHcCCceEEEeec
Confidence            1225789999874

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=89.38  E-value=0.13  Score=43.58  Aligned_cols=76  Identities=12%  Similarity=0.093  Sum_probs=47.9

Q ss_pred             CCCEEEEECCccchHHHHHHH----cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAIS----RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD  229 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAlS----rG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~  229 (299)
                      +..++|++|++.|.-.+..++    .+ ..+++++|+++... .....     . ..+++++++|..+... ...+  ..
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~-~~~~~-----~-~~~I~~i~gDs~~~~~-~~~l--~~  149 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC-QIPAS-----D-MENITLHQGDCSDLTT-FEHL--RE  149 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC-CCCGG-----G-CTTEEEEECCSSCSGG-GGGG--SS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhh-hhhhc-----c-ccceeeeecccccHHH-HHHH--Hh
Confidence            578999999999965543322    23 35799999998654 32211     1 2468999998653221 1111  23


Q ss_pred             CCeeEEEEcCC
Q 022298          230 GPFDYMSVTPP  240 (299)
Q Consensus       230 ~~fDlI~iDPP  240 (299)
                      ..+|+||+|=-
T Consensus       150 ~~~dlIfID~~  160 (232)
T d2bm8a1         150 MAHPLIFIDNA  160 (232)
T ss_dssp             SCSSEEEEESS
T ss_pred             cCCCEEEEcCC
Confidence            46899999964

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.88  E-value=0.85  Score=38.32  Aligned_cols=83  Identities=14%  Similarity=0.071  Sum_probs=54.3

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHH---Hhhh
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLER---AEQF  225 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~---~~~~  225 (299)
                      ++++.+|=-|+++| +|.+    ++..|+ +|+.++.+.+.+ +-+.+.++..+.. .++..+.+|+.+...-   ....
T Consensus         3 l~gKvalVTGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~   79 (264)
T d1spxa_           3 FAEKVAIITGSSNG-IGRATAVLFAREGA-KVTITGRHAERL-EETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT   79 (264)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH
Confidence            45777776666554 4543    456798 599999999997 8888888877654 3578888887533211   1111


Q ss_pred             cCCCCCeeEEEEcC
Q 022298          226 VGKDGPFDYMSVTP  239 (299)
Q Consensus       226 ~~~~~~fDlI~iDP  239 (299)
                      ....++.|+++.+-
T Consensus        80 ~~~~g~iDilvnnA   93 (264)
T d1spxa_          80 LGKFGKLDILVNNA   93 (264)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHhCCCCEeeccc
Confidence            11236789998774

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.73  E-value=0.66  Score=39.26  Aligned_cols=84  Identities=12%  Similarity=0.012  Sum_probs=55.7

Q ss_pred             CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHH---Hhhhc
Q 022298          154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLER---AEQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~---~~~~~  226 (299)
                      ++++++|=-|+++|   +++..++..|+ +|+.+|.|++.+ +-+.+.++..+.. .++..+.+|+.+...-   .....
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   80 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERL-EETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL   80 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence            46788887776665   33444556788 699999999987 8888888777654 3577888887543211   11111


Q ss_pred             CCCCCeeEEEEcC
Q 022298          227 GKDGPFDYMSVTP  239 (299)
Q Consensus       227 ~~~~~fDlI~iDP  239 (299)
                      ...++.|+++.+.
T Consensus        81 ~~~g~iDilvnnA   93 (272)
T d1xkqa_          81 KQFGKIDVLVNNA   93 (272)
T ss_dssp             HHHSCCCEEEECC
T ss_pred             HHhCCceEEEeCC
Confidence            1235789999774

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=88.52  E-value=0.92  Score=38.08  Aligned_cols=85  Identities=12%  Similarity=0.150  Sum_probs=55.2

Q ss_pred             CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH---HHhhhcC
Q 022298          154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVG  227 (299)
Q Consensus       154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~---~~~~~~~  227 (299)
                      ++++++|=-|+++|   +++..++..|+ +|+.+|.|++.+ +-+.+.++..+.  ++..+.+|+.+...   .......
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~   78 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREAL-EKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVR   78 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence            56888887776655   23334456788 599999999987 777777776653  47788888754321   1111111


Q ss_pred             CCCCeeEEEEcCCCC
Q 022298          228 KDGPFDYMSVTPPYT  242 (299)
Q Consensus       228 ~~~~fDlI~iDPPY~  242 (299)
                      ..+..|+++.+.-+.
T Consensus        79 ~~g~iDilVnnaG~~   93 (260)
T d1zema1          79 DFGKIDFLFNNAGYQ   93 (260)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HhCCCCeehhhhccc
Confidence            236799999876543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.22  E-value=0.43  Score=38.73  Aligned_cols=43  Identities=12%  Similarity=0.012  Sum_probs=32.1

Q ss_pred             CCCCEEEEECCcc-chHHHHHH-HcCCCEEEEEeCCHHHHHHHHHH
Q 022298          154 LRPGRWLDLYSGT-GSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIP  197 (299)
Q Consensus       154 ~~~~~VLDLfaGS-GalgIEAl-SrGa~~V~~VD~n~~Al~~~a~~  197 (299)
                      .++.+||-+|||. |.+++.++ .+|+.+|+++|.++..+ +.+++
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~   68 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKA   68 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhh-Hhhhh
Confidence            3688999998875 33444433 47999999999999887 77654

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=87.72  E-value=0.28  Score=41.25  Aligned_cols=53  Identities=13%  Similarity=-0.027  Sum_probs=38.8

Q ss_pred             CCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022298          156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~  217 (299)
                      ..+|||+|||+|.++++++++- .-+++.+|.-. .+ +.       ....++++.+.+|+++
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-~~-------~~~~~r~~~~~~d~~~  135 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VI-ED-------APSYPGVEHVGGDMFV  135 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TT-TT-------CCCCTTEEEEECCTTT
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hh-hh-------cccCCceEEecccccc
Confidence            4689999999999999988762 34799999854 33 22       2233568888888754

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.60  E-value=0.84  Score=38.16  Aligned_cols=85  Identities=13%  Similarity=0.012  Sum_probs=52.0

Q ss_pred             CCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcC
Q 022298          155 RPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVG  227 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~  227 (299)
                      .|+.+|=-|+++| +|.+    ++++|+ +|+.+|.|.+.+ +.+.+.+....-..++..+++|+.+.-.-   ......
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga-~V~i~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGA-KVALVDWNLEAG-VQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD   78 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            4777887777655 4544    456788 599999999886 55555443322223577888887643211   111111


Q ss_pred             CCCCeeEEEEcCCCC
Q 022298          228 KDGPFDYMSVTPPYT  242 (299)
Q Consensus       228 ~~~~fDlI~iDPPY~  242 (299)
                      ..++.|+++-+--..
T Consensus        79 ~~G~iDilVnnAg~~   93 (254)
T d2gdza1          79 HFGRLDILVNNAGVN   93 (254)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HcCCcCeeccccccc
Confidence            235799999876544

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.28  E-value=1.6  Score=36.41  Aligned_cols=83  Identities=19%  Similarity=0.134  Sum_probs=52.5

Q ss_pred             CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-HHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298          154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL-EWTGFLDVSSIHTVRVETFLER---AEQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~-~~~g~~~~~~vi~~D~~~~l~~---~~~~~  226 (299)
                      ++++++|=-|+++|   +++..++..|+ +|+.+|.|.+.+ +-+.+.+ +..+.  ++..+.+|+.+...-   .....
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~-~~~~~~l~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~   78 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEA-SEAAQKLTEKYGV--ETMAFRCDVSNYEEVKKLLEAVK   78 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHHHH
Confidence            67888888887766   34444567798 699999999887 5555444 44453  467788887543211   01111


Q ss_pred             CCCCCeeEEEEcCC
Q 022298          227 GKDGPFDYMSVTPP  240 (299)
Q Consensus       227 ~~~~~fDlI~iDPP  240 (299)
                      ...++.|+++.+-=
T Consensus        79 ~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          79 EKFGKLDTVVNAAG   92 (251)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence            12257999997754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=87.26  E-value=1.8  Score=35.99  Aligned_cols=81  Identities=17%  Similarity=0.137  Sum_probs=51.9

Q ss_pred             CCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcCC
Q 022298          156 PGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGK  228 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~~  228 (299)
                      ++.+|=-|+++ .+|.+    ++..|+ +|+.++.+++.+ +-+.+.++..+.  ++..+++|+.+...-   .......
T Consensus         2 gKValITGas~-GIG~aia~~la~~Ga-~V~i~~r~~~~l-~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (257)
T d2rhca1           2 SEVALVTGATS-GIGLEIARRLGKEGL-RVFVCARGEEGL-RTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVER   76 (257)
T ss_dssp             CCEEEEESCSS-HHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCC-HHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHH
Confidence            44556556544 44544    456788 599999999997 778888877664  477888887543211   1111122


Q ss_pred             CCCeeEEEEcCCC
Q 022298          229 DGPFDYMSVTPPY  241 (299)
Q Consensus       229 ~~~fDlI~iDPPY  241 (299)
                      .++.|+++.+--.
T Consensus        77 ~g~iDilVnnAG~   89 (257)
T d2rhca1          77 YGPVDVLVNNAGR   89 (257)
T ss_dssp             TCSCSEEEECCCC
T ss_pred             hCCCCEEEecccc
Confidence            4679999977643

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.23  E-value=0.28  Score=39.80  Aligned_cols=43  Identities=16%  Similarity=0.084  Sum_probs=30.5

Q ss_pred             CCCEEEEECCccch----HHHHHHHc----C-CCEEEEEeCCHHHHHHHHHHH
Q 022298          155 RPGRWLDLYSGTGS----VGIEAISR----G-CSEVHFVEMDPWVVSNVLIPN  198 (299)
Q Consensus       155 ~~~~VLDLfaGSGa----lgIEAlSr----G-a~~V~~VD~n~~Al~~~a~~N  198 (299)
                      ...+||+.|||||-    +++.+...    + --++++.|+|+.++ +.+++.
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l-~~A~~g   75 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL-EKARSG   75 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH-HHHHHT
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHh-hHhhcC
Confidence            35699999999994    44433321    1 12699999999998 888743

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=86.69  E-value=0.94  Score=38.09  Aligned_cols=81  Identities=19%  Similarity=0.147  Sum_probs=51.7

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HH-hhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~-~~~~  226 (299)
                      ++++++|=-|+++| +|.+    ++..|+ +|+.+|.|.+.+ +-+.+.+   +-.+.+.++.+|+.+...  .+ ....
T Consensus         4 L~gKvalITGas~G-IG~aia~~la~~Ga-~V~i~~r~~~~~-~~~~~~l---~~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (268)
T d2bgka1           4 LQDKVAIITGGAGG-IGETTAKLFVRYGA-KVVIADIADDHG-QKVCNNI---GSPDVISFVHCDVTKDEDVRNLVDTTI   77 (268)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHH---CCTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHh---cCCCceEEEEccCCCHHHHHHHHHHHH
Confidence            57888998887766 4544    456788 599999999886 6555554   333457778888754321  11 1111


Q ss_pred             CCCCCeeEEEEcCC
Q 022298          227 GKDGPFDYMSVTPP  240 (299)
Q Consensus       227 ~~~~~fDlI~iDPP  240 (299)
                      ...++.|+++.+--
T Consensus        78 ~~~g~iD~lVnnAG   91 (268)
T d2bgka1          78 AKHGKLDIMFGNVG   91 (268)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCcceeccccc
Confidence            12367899997664

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.32  E-value=1.3  Score=37.02  Aligned_cols=84  Identities=13%  Similarity=0.077  Sum_probs=54.8

Q ss_pred             CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HH-hhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~-~~~~  226 (299)
                      ++++++|=-|+ ++.+|.+.    +..|+ +|+.++.+++.+ +-+.+.++..+.  ++..+++|+.+...  .+ ....
T Consensus         9 L~gK~alITGa-s~GIG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~   83 (255)
T d1fmca_           9 LDGKCAIITGA-GAGIGKEIAITFATAGA-SVVVSDINADAA-NHVVDEIQQLGG--QAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             CTTCEEEETTT-TSHHHHHHHHHHHTTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHH
Confidence            56888885554 45566553    35687 599999999987 777777777653  47788898764321  10 1111


Q ss_pred             CCCCCeeEEEEcCCCC
Q 022298          227 GKDGPFDYMSVTPPYT  242 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY~  242 (299)
                      ...++.|+++.+.-..
T Consensus        84 ~~~g~iDilvnnAG~~   99 (255)
T d1fmca_          84 SKLGKVDILVNNAGGG   99 (255)
T ss_dssp             HHHSSCCEEEECCCCC
T ss_pred             HHcCCCCEeeeCCcCC
Confidence            1225799999887544

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.77  E-value=2.4  Score=34.98  Aligned_cols=80  Identities=19%  Similarity=0.163  Sum_probs=52.3

Q ss_pred             CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      +.|+++|=-|+++|   +++..++..|+ +|+.+|.|++.+ +-+.+.   ++   .+..++.|+.+... ..+....-+
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l-~~~~~~---~~---~~~~~~~Dv~d~~~-v~~~~~~~g   75 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADL-DSLVRE---CP---GIEPVCVDLGDWEA-TERALGSVG   75 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHH---ST---TCEEEECCTTCHHH-HHHHHTTCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHh---cC---CCeEEEEeCCCHHH-HHHHHHHhC
Confidence            57899998887766   44444556788 699999999876 544433   22   24567788765432 222333446


Q ss_pred             CeeEEEEcCCCC
Q 022298          231 PFDYMSVTPPYT  242 (299)
Q Consensus       231 ~fDlI~iDPPY~  242 (299)
                      +.|+++.+....
T Consensus        76 ~iDilVnnAg~~   87 (244)
T d1pr9a_          76 PVDLLVNNAAVA   87 (244)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CceEEEeccccc
Confidence            899999876543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=85.54  E-value=1.5  Score=36.63  Aligned_cols=83  Identities=12%  Similarity=0.042  Sum_probs=52.5

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HH-hhhc
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQFV  226 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~-~~~~  226 (299)
                      ++++++|=-|+++| +|.+    +++.|+ +|+.+|.+.+.+ +.+.+.+   +..+++.++.+|+.+...  .+ ....
T Consensus         4 L~gK~alVTGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (251)
T d1zk4a1           4 LDGKVAIITGGTLG-IGLAIATKFVEEGA-KVMITGRHSDVG-EKAAKSV---GTPDQIQFFQHDSSDEDGWTKLFDATE   77 (251)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHH---CCTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHh---CCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            46777777766554 4544    456788 599999999887 6666655   334568888999764321  11 1111


Q ss_pred             CCCCCeeEEEEcCCCC
Q 022298          227 GKDGPFDYMSVTPPYT  242 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY~  242 (299)
                      ...++.|+++.+.-+.
T Consensus        78 ~~~G~iDiLVnnAg~~   93 (251)
T d1zk4a1          78 KAFGPVSTLVNNAGIA   93 (251)
T ss_dssp             HHHSSCCEEEECCCCC
T ss_pred             HHhCCceEEEeccccc
Confidence            1236789999877544

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.44  E-value=1.6  Score=33.88  Aligned_cols=69  Identities=16%  Similarity=0.068  Sum_probs=41.9

Q ss_pred             CCCCEEEEECCc-cchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHhhhcCCCC
Q 022298          154 LRPGRWLDLYSG-TGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDG  230 (299)
Q Consensus       154 ~~~~~VLDLfaG-SGalgIEAl-SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~-~D~~~~l~~~~~~~~~~~  230 (299)
                      .++.+||-+|+| .|.+++.++ .+|+ +|+++|.+++.+ +.+++    +|...   ++. .+-.++.+.      ..+
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~-~~a~~----lGa~~---~i~~~~~~~~~~~------~~~   90 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKR-EDAMK----MGADH---YIATLEEGDWGEK------YFD   90 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTH-HHHHH----HTCSE---EEEGGGTSCHHHH------SCS
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHH-HHhhc----cCCcE---EeeccchHHHHHh------hhc
Confidence            368899998765 333333333 3688 699999999887 76654    67532   333 222233322      246


Q ss_pred             CeeEEEE
Q 022298          231 PFDYMSV  237 (299)
Q Consensus       231 ~fDlI~i  237 (299)
                      .||+|+.
T Consensus        91 ~~d~vi~   97 (168)
T d1piwa2          91 TFDLIVV   97 (168)
T ss_dssp             CEEEEEE
T ss_pred             ccceEEE
Confidence            7998875

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=85.42  E-value=1.2  Score=37.33  Aligned_cols=83  Identities=12%  Similarity=0.050  Sum_probs=53.0

Q ss_pred             CCCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH--H-hhhc
Q 022298          153 SLRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER--A-EQFV  226 (299)
Q Consensus       153 ~~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~--~-~~~~  226 (299)
                      +++++++|=-|+++|   +++.++++.|+ +|+.+|.+.+.+ +.+.+.   ++  +++.++++|+.+...-  + ....
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~~---~~--~~~~~~~~Dv~~~~~v~~~~~~~~   74 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEG-AATARE---LG--DAARYQHLDVTIEEDWQRVVAYAR   74 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHT---TG--GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHH---hC--CceEEEEcccCCHHHHHHHHHHHH
Confidence            467889998888877   44555667898 599999999876 444332   33  4577888887643211  1 1111


Q ss_pred             CCCCCeeEEEEcCCCC
Q 022298          227 GKDGPFDYMSVTPPYT  242 (299)
Q Consensus       227 ~~~~~fDlI~iDPPY~  242 (299)
                      ...++.|+++.+.-..
T Consensus        75 ~~~g~iDilVnnAg~~   90 (254)
T d1hdca_          75 EEFGSVDGLVNNAGIS   90 (254)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHcCCccEEEecCccc
Confidence            1225789999876443

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.13  E-value=2.6  Score=34.85  Aligned_cols=78  Identities=19%  Similarity=0.147  Sum_probs=49.8

Q ss_pred             CCCCCEEEEECCccchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCC
Q 022298          153 SLRPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK  228 (299)
Q Consensus       153 ~~~~~~VLDLfaGSGalgI----EAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~  228 (299)
                      ++.|+++|=-|+++| +|.    .++..|+ +|+.+|.+.+.+ +-+.+.+   +   .+..++.|+.+... .......
T Consensus         2 dl~GK~alITGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~~---~---~~~~~~~Dv~~~~~-v~~~~~~   71 (242)
T d1cyda_           2 NFSGLRALVTGAGKG-IGRDTVKALHASGA-KVVAVTRTNSDL-VSLAKEC---P---GIEPVCVDLGDWDA-TEKALGG   71 (242)
T ss_dssp             CCTTCEEEEESTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHS---T---TCEEEECCTTCHHH-HHHHHTT
T ss_pred             CCCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHhc---C---CCeEEEEeCCCHHH-HHHHHHH
Confidence            467889997776665 444    3456788 599999998876 4444332   1   25567888765432 1222333


Q ss_pred             CCCeeEEEEcCC
Q 022298          229 DGPFDYMSVTPP  240 (299)
Q Consensus       229 ~~~fDlI~iDPP  240 (299)
                      -++.|+++.+--
T Consensus        72 ~g~iDilVnnAg   83 (242)
T d1cyda_          72 IGPVDLLVNNAA   83 (242)
T ss_dssp             CCCCSEEEECCC
T ss_pred             cCCCeEEEECCc
Confidence            468999998754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.08  E-value=2.4  Score=35.60  Aligned_cols=86  Identities=13%  Similarity=0.018  Sum_probs=53.7

Q ss_pred             CCCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH-HhCCCCcEEEEEcchhhHHHHH---hhh
Q 022298          153 SLRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE-WTGFLDVSSIHTVRVETFLERA---EQF  225 (299)
Q Consensus       153 ~~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~-~~g~~~~~~vi~~D~~~~l~~~---~~~  225 (299)
                      +++|+++|=-||.+|   +++..+++.|+ +|+.+|.|...+ +-+.+.+. ..+  .++.++.+|+.+...-.   ...
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l-~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~   97 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVL-KATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSEL   97 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhh
Confidence            467888887777665   33344456787 699999999887 55555553 333  34678888875433111   111


Q ss_pred             cCCCCCeeEEEEcCCCC
Q 022298          226 VGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~  242 (299)
                      ....+..|+++.+.-+.
T Consensus        98 ~~~~g~iDilvnnAg~~  114 (294)
T d1w6ua_          98 IKVAGHPNIVINNAAGN  114 (294)
T ss_dssp             HHHTCSCSEEEECCCCC
T ss_pred             hhhccccchhhhhhhhc
Confidence            12346889998876544

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=84.94  E-value=1.7  Score=36.30  Aligned_cols=86  Identities=14%  Similarity=0.079  Sum_probs=55.5

Q ss_pred             CCCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HH-hhhc
Q 022298          153 SLRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQFV  226 (299)
Q Consensus       153 ~~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~-~~~~  226 (299)
                      +++++++|=-|+++|   +++..++..|+ +|+.+|.|++.+ +-+.+.++..+.  ++..+.+|+.+...  .+ ....
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKEL-NDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVA   80 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHH
Confidence            367888887776655   23344456788 699999999987 777777766653  46778888754321  11 1111


Q ss_pred             C-CCCCeeEEEEcCCCC
Q 022298          227 G-KDGPFDYMSVTPPYT  242 (299)
Q Consensus       227 ~-~~~~fDlI~iDPPY~  242 (299)
                      . ...+.|+++.+.-..
T Consensus        81 ~~~~~~idilvnnAG~~   97 (259)
T d2ae2a_          81 NHFHGKLNILVNNAGIV   97 (259)
T ss_dssp             HHTTTCCCEEEECCCCC
T ss_pred             HHhCCCceEEEECCcee
Confidence            1 134789999886543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.79  E-value=3  Score=34.53  Aligned_cols=77  Identities=17%  Similarity=0.135  Sum_probs=49.4

Q ss_pred             EEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhcCCCCCe
Q 022298          160 LDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFVGKDGPF  232 (299)
Q Consensus       160 LDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~~~~~~f  232 (299)
                      |=-|++ +.+|.+    ++..|+ +|+.+|.|++.+ +.+.+.++..+.  ++..+++|+.+...-.   .......++.
T Consensus         5 lITGas-~GIG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (255)
T d1gega_           5 LVTGAG-QGIGKAIALRLVKDGF-AVAIADYNDATA-KAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLGGF   79 (255)
T ss_dssp             EEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             EEcCCc-cHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence            444544 445544    446788 699999999997 778888877663  4778889976432111   1111223689


Q ss_pred             eEEEEcCCC
Q 022298          233 DYMSVTPPY  241 (299)
Q Consensus       233 DlI~iDPPY  241 (299)
                      |+++.+-=+
T Consensus        80 DilVnnAG~   88 (255)
T d1gega_          80 DVIVNNAGV   88 (255)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEecccc
Confidence            999977543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.63  E-value=1.2  Score=34.75  Aligned_cols=74  Identities=14%  Similarity=0.225  Sum_probs=45.4

Q ss_pred             CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      .+.+||=+||  |.+|+.++    ..|+..|+.+|.++..+ +.+++    +|..   +++..+-.++.+....+  .++
T Consensus        28 ~g~~VlI~G~--G~iG~~~~~~ak~~g~~~v~~~~~~~~k~-~~a~~----~Ga~---~~i~~~~~~~~~~i~~~--t~g   95 (174)
T d1f8fa2          28 PASSFVTWGA--GAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQ----LGAT---HVINSKTQDPVAAIKEI--TDG   95 (174)
T ss_dssp             TTCEEEEESC--SHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHH----HTCS---EEEETTTSCHHHHHHHH--TTS
T ss_pred             CCCEEEEeCC--CHHHhhhhhcccccccceeeeeccHHHHH-HHHHH----cCCe---EEEeCCCcCHHHHHHHH--cCC
Confidence            5788887765  56665543    36998899999999876 66654    5653   24443333333332212  135


Q ss_pred             CeeEEEEcCC
Q 022298          231 PFDYMSVTPP  240 (299)
Q Consensus       231 ~fDlI~iDPP  240 (299)
                      .||+||-.-.
T Consensus        96 g~D~vid~~G  105 (174)
T d1f8fa2          96 GVNFALESTG  105 (174)
T ss_dssp             CEEEEEECSC
T ss_pred             CCcEEEEcCC
Confidence            7999886543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=83.24  E-value=2.5  Score=35.11  Aligned_cols=86  Identities=10%  Similarity=0.013  Sum_probs=53.3

Q ss_pred             CCCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-HHhCCCCcEEEEEcchhhHHHH---Hhhh
Q 022298          153 SLRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL-EWTGFLDVSSIHTVRVETFLER---AEQF  225 (299)
Q Consensus       153 ~~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~-~~~g~~~~~~vi~~D~~~~l~~---~~~~  225 (299)
                      ++.++++|=-|+++|   +++..++..|+ +|+.++.+.+.+ +-+.+.+ +..+.  ++..+++|+.+...-   ....
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~-~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~   81 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADA-VEVTEKVGKEFGV--KTKAYQCDVSNTDIVTKTIQQI   81 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTH-HHHHHHHHHHHTC--CEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHHhCC--ceEEEEccCCCHHHHHHHHHHH
Confidence            467888888886655   23344456788 599999998766 4444444 44453  477888887543211   1111


Q ss_pred             cCCCCCeeEEEEcCCCC
Q 022298          226 VGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~  242 (299)
                      ....++.|+++.+....
T Consensus        82 ~~~~g~iDilVnnAg~~   98 (260)
T d1h5qa_          82 DADLGPISGLIANAGVS   98 (260)
T ss_dssp             HHHSCSEEEEEECCCCC
T ss_pred             HHHhCCCcEeccccccc
Confidence            12246899999887544

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=83.20  E-value=2.5  Score=35.30  Aligned_cols=85  Identities=13%  Similarity=0.059  Sum_probs=54.8

Q ss_pred             CCCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH--H-hhh
Q 022298          153 SLRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER--A-EQF  225 (299)
Q Consensus       153 ~~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~--~-~~~  225 (299)
                      +++++++|=-||.. .+|.+    ++..|+ +|+.++.|++.+ +-+.+.++..+.  .+.++.+|+.+.-.-  . ...
T Consensus         3 ~L~gK~alITGas~-GIG~aia~~la~~G~-~V~i~~r~~~~l-~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~   77 (258)
T d1ae1a_           3 SLKGTTALVTGGSK-GIGYAIVEELAGLGA-RVYTCSRNEKEL-DECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTV   77 (258)
T ss_dssp             CCTTCEEEEESCSS-HHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCC-HHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHH
Confidence            35788888777754 44444    456788 699999999887 777777777664  367788887543211  0 111


Q ss_pred             cC-CCCCeeEEEEcCCCC
Q 022298          226 VG-KDGPFDYMSVTPPYT  242 (299)
Q Consensus       226 ~~-~~~~fDlI~iDPPY~  242 (299)
                      .. ..+..|+++.+....
T Consensus        78 ~~~~~g~idilinnag~~   95 (258)
T d1ae1a_          78 AHVFDGKLNILVNNAGVV   95 (258)
T ss_dssp             HHHTTSCCCEEEECCCCC
T ss_pred             HHHhCCCcEEEecccccc
Confidence            11 235688988776544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.95  E-value=1.3  Score=34.29  Aligned_cols=40  Identities=13%  Similarity=0.178  Sum_probs=29.1

Q ss_pred             CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHH
Q 022298          155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIP  197 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~  197 (299)
                      ++.+||=+||  |.+|+-++    .+|+.+|+++|.+++.+ +.+++
T Consensus        26 ~gd~VlI~G~--G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl-~~a~~   69 (171)
T d1pl8a2          26 LGHKVLVCGA--GPIGMVTLLVAKAMGAAQVVVTDLSATRL-SKAKE   69 (171)
T ss_dssp             TTCEEEEECC--SHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH
T ss_pred             CCCEEEEECC--CccHHHHHHHHHHcCCceEEeccCCHHHH-HHHHH
Confidence            5778887766  45555433    46998999999999987 66654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=82.75  E-value=3.5  Score=33.56  Aligned_cols=85  Identities=12%  Similarity=-0.018  Sum_probs=52.7

Q ss_pred             CCCCEEEEECCcc--c---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH---HHHhhh
Q 022298          154 LRPGRWLDLYSGT--G---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQF  225 (299)
Q Consensus       154 ~~~~~VLDLfaGS--G---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l---~~~~~~  225 (299)
                      ++++++|=-|+++  |   +++..++..|+ +|+.++.+.+.. +.+.+.....+..   .....|..+..   ....+.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   77 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLK-GRVEEFAAQLGSD---IVLQCDVAEDASIDTMFAEL   77 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTH-HHHHHHHHHTTCC---CEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHhhcCCc---ceeecccchHHHHHHHHHHh
Confidence            5688899888766  4   34445567788 599999998876 7777766655532   23444433222   111222


Q ss_pred             cCCCCCeeEEEEcCCCCC
Q 022298          226 VGKDGPFDYMSVTPPYTA  243 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~~  243 (299)
                      .......|+++.+.-+..
T Consensus        78 ~~~~~~~d~~v~~a~~~~   95 (258)
T d1qsga_          78 GKVWPKFDGFVHSIGFAP   95 (258)
T ss_dssp             HTTCSSEEEEEECCCCCC
T ss_pred             hhcccccceEEEeecccc
Confidence            344578899998865543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=81.72  E-value=2.4  Score=32.60  Aligned_cols=75  Identities=12%  Similarity=0.063  Sum_probs=44.3

Q ss_pred             CCCEEEEECCccchHHHH---HH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298          155 RPGRWLDLYSGTGSVGIE---AI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG  230 (299)
Q Consensus       155 ~~~~VLDLfaGSGalgIE---Al-SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~  230 (299)
                      ++.+||=.+|+ |.+|+.   ++ .+|+..|+.+|.+++.. +.+++    +|..   .++..+-.++.+..... ...+
T Consensus        27 ~g~~vlV~G~~-G~vG~~~~~~~~~~g~~~V~~~~~~~~~~-~~~~~----~Ga~---~~i~~~~~~~~~~~~~~-~~~~   96 (170)
T d1jvba2          27 PTKTLLVVGAG-GGLGTMAVQIAKAVSGATIIGVDVREEAV-EAAKR----AGAD---YVINASMQDPLAEIRRI-TESK   96 (170)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHHTCCEEEEEESSHHHH-HHHHH----HTCS---EEEETTTSCHHHHHHHH-TTTS
T ss_pred             CCCEEEEEecc-ccceeeeeecccccccccccccccchhhH-HHHHH----cCCc---eeeccCCcCHHHHHHHH-hhcc
Confidence            57788877753 444443   22 46888999999999886 77654    5653   23443333333332211 1245


Q ss_pred             CeeEEEEcC
Q 022298          231 PFDYMSVTP  239 (299)
Q Consensus       231 ~fDlI~iDP  239 (299)
                      .||+||-.-
T Consensus        97 ~~d~vid~~  105 (170)
T d1jvba2          97 GVDAVIDLN  105 (170)
T ss_dssp             CEEEEEESC
T ss_pred             cchhhhccc
Confidence            699877543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=81.52  E-value=2.8  Score=34.64  Aligned_cols=81  Identities=14%  Similarity=0.044  Sum_probs=49.8

Q ss_pred             CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H-HhhhcC
Q 022298          154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFVG  227 (299)
Q Consensus       154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~-~~~~~~  227 (299)
                      ++++++|=-|+++|   +++..++..|+ +|+.+|.+++.+ +.+.+.+   +  .+...+.+|+.+...  . ......
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l-~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~   74 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGA-QAISDYL---G--ANGKGLMLNVTDPASIESVLEKIRA   74 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHh---C--CCCcEEEEEecCHHHhhhhhhhhhc
Confidence            56788887777665   33334456788 699999999887 6555443   2  235677888754321  1 111112


Q ss_pred             CCCCeeEEEEcCCC
Q 022298          228 KDGPFDYMSVTPPY  241 (299)
Q Consensus       228 ~~~~fDlI~iDPPY  241 (299)
                      ..++.|+++.+.-.
T Consensus        75 ~~g~iDilVnnAg~   88 (243)
T d1q7ba_          75 EFGEVDILVNNAGI   88 (243)
T ss_dssp             HTCSCSEEEECCCC
T ss_pred             ccCCcceehhhhhh
Confidence            24689999987643

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.43  E-value=2.4  Score=35.19  Aligned_cols=84  Identities=15%  Similarity=0.096  Sum_probs=53.7

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEE-EeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhh
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHF-VEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQF  225 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~-VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~  225 (299)
                      +.|+++| +..|++.+|.+    +++.|+. |+. ...+.+.+ +.+.+.++..|.  ++..+.+|+.+...-   ....
T Consensus         4 L~GK~al-ITGas~GIG~aia~~la~~G~~-Vvi~~~~~~~~~-~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~   78 (259)
T d1ja9a_           4 LAGKVAL-TTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAA-EEVVAELKKLGA--QGVAIQADISKPSEVVALFDKA   78 (259)
T ss_dssp             TTTCEEE-ETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHH-HHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEE-EeCCCCHHHHHHHHHHHHcCCE-EEEEcCCChHHH-HHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHH
Confidence            5688888 55556655554    4567885 555 56777776 788888888774  477888887543211   1111


Q ss_pred             cCCCCCeeEEEEcCCCC
Q 022298          226 VGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~  242 (299)
                      ....+..|+++.+.-..
T Consensus        79 ~~~~g~idilinnag~~   95 (259)
T d1ja9a_          79 VSHFGGLDFVMSNSGME   95 (259)
T ss_dssp             HHHHSCEEEEECCCCCC
T ss_pred             HHHcCCCcEEEeccccc
Confidence            11235799999887643

>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N6 adenine-specific DNA methylase, DAM
domain: DNA methylase DpnM
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.41  E-value=0.31  Score=41.11  Aligned_cols=32  Identities=9%  Similarity=0.262  Sum_probs=25.9

Q ss_pred             CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHH
Q 022298          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWV  190 (299)
Q Consensus       156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~A  190 (299)
                      -.+.+|+|||+|++.+...   ...++.-|+|+..
T Consensus        27 ~~~yvEpF~Gggav~~~~~---~~~~viND~n~~l   58 (275)
T d2dpma_          27 YNRYFEPFVGGGALFFDLA---PKDAVINDFNAEL   58 (275)
T ss_dssp             CSCEEETTCTTCHHHHHHC---CSEEEEEESCHHH
T ss_pred             cCEEEeeCCCHHHHHhhhc---cCcEEEEeCCHHH
Confidence            3589999999999998542   3578999999974

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.45  E-value=4.7  Score=34.25  Aligned_cols=85  Identities=11%  Similarity=-0.009  Sum_probs=52.5

Q ss_pred             CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC---CCCcEEEEEcchhhHHH--HH-h
Q 022298          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTG---FLDVSSIHTVRVETFLE--RA-E  223 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g---~~~~~~vi~~D~~~~l~--~~-~  223 (299)
                      ++++++|=-||++| +|.+    ++..|+ +|+.++.+.+.+ +.+.+.++...   ...++..+.+|+.+...  .+ .
T Consensus        10 L~gKvalITGas~G-IG~aia~~la~~Ga-~Vvi~~r~~~~l-~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~   86 (297)
T d1yxma1          10 LQGQVAIVTGGATG-IGKAIVKELLELGS-NVVIASRKLERL-KSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   86 (297)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence            57888887766554 5554    446788 599999999887 66655555421   12357788888754321  11 1


Q ss_pred             hhcCCCCCeeEEEEcCCC
Q 022298          224 QFVGKDGPFDYMSVTPPY  241 (299)
Q Consensus       224 ~~~~~~~~fDlI~iDPPY  241 (299)
                      ......++.|+++.+...
T Consensus        87 ~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          87 STLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHhCCeEEEEeeccc
Confidence            111123578999988643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.36  E-value=2.8  Score=34.97  Aligned_cols=85  Identities=14%  Similarity=0.120  Sum_probs=54.5

Q ss_pred             CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H-HhhhcC
Q 022298          154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFVG  227 (299)
Q Consensus       154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~-~~~~~~  227 (299)
                      ++++++|=-|+++|   +++..++..|+ +|+.++.|++.+ +-+.+.++..+.  ++..+.+|+.+...  . ......
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l-~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYEL-NECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSS   81 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHH
Confidence            56888887776665   23334456788 699999999987 777777766553  47788888753321  1 111111


Q ss_pred             C-CCCeeEEEEcCCCC
Q 022298          228 K-DGPFDYMSVTPPYT  242 (299)
Q Consensus       228 ~-~~~fDlI~iDPPY~  242 (299)
                      . .++.|+++.+....
T Consensus        82 ~~~g~idilvnnAG~~   97 (259)
T d1xq1a_          82 MFGGKLDILINNLGAI   97 (259)
T ss_dssp             HHTTCCSEEEEECCC-
T ss_pred             HhCCCccccccccccc
Confidence            1 35789999887654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=80.19  E-value=2.5  Score=35.36  Aligned_cols=84  Identities=14%  Similarity=0.021  Sum_probs=52.5

Q ss_pred             CCCCEEEEECCccchHHH----HHHHcCCCEEEEEeCCH-HHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HH-hhh
Q 022298          154 LRPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDP-WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQF  225 (299)
Q Consensus       154 ~~~~~VLDLfaGSGalgI----EAlSrGa~~V~~VD~n~-~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~-~~~  225 (299)
                      ++++++|=-|+++| +|.    .+++.|+ +|+.++.+. +.+ +.+.+.++..+.  ++..+++|+.+...  .+ ...
T Consensus         5 L~gK~alITGas~G-IG~aia~~la~~G~-~Vv~~~r~~~~~~-~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~   79 (261)
T d1geea_           5 LEGKVVVITGSSTG-LGKSMAIRFATEKA-KVVVNYRSKEDEA-NSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSA   79 (261)
T ss_dssp             GTTCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSCHHHH-HHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCcHHHH-HHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHH
Confidence            56788886666655 454    4456788 699999874 444 667777777663  47788888764321  11 111


Q ss_pred             cCCCCCeeEEEEcCCCC
Q 022298          226 VGKDGPFDYMSVTPPYT  242 (299)
Q Consensus       226 ~~~~~~fDlI~iDPPY~  242 (299)
                      ....++.|+++.+.-..
T Consensus        80 ~~~~G~iDiLVnnAG~~   96 (261)
T d1geea_          80 IKEFGKLDVMINNAGLE   96 (261)
T ss_dssp             HHHHSCCCEEEECCCCC
T ss_pred             HHHhCCCCEeeccceec
Confidence            11235789999886443