Citrus Sinensis ID: 022302

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MKSCSAMETTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLNLR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccHHHHcccccccEEEcccccccccccccccccccEEEccccccccccHHHHHccccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccccccHcccccHHHHHHcccccccccccHHHcccccccEEEccccccccccccHccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEEccccccccccccHHHHcccccccEEEcccccccccHHHcccccccEEEEEEEcccccccHHHcccccccEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mkscsameTTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFisvsdigyddkilpswvgeddgmssdccddwegvkcnatTRRVMQLSLNETIkfnyssgsgsALLLNMslfhpfeelqrldlpgnwftgiyenraydsfgslkqlkmlnlgdnffndsilpylnTLTSLTTLilsdnsiegsrtkqglANLRYLQVLDlsgnfnitsgsltrlglanltnlkkldlgscgitTIQGLAKLKNLEALDLSYNYYIHSSLEglanltnlqvldlsdnqnlttlgkplnlr
Flexible Loop (DISEMBL)
MKSCSAMETTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFisvsdigydDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLdlsdnqnlttlgkplnlr
Low Complexity Region (SEG)
MKSCSAMETTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYlntltslttlilsdnsiEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLNLR
Disordered region (IsUnstruct)
*********TSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLS***************
Disordered Region (DISOPRED)
************IKFSLMSLIWIIVLMNEIHGYK*CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLNL*
Disordered Region (DISEMBL)
********TTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLNLR
Disordered Region (DISPRO)
*****AMETTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSCSAMETTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLNLR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q0WR59	1048	Probable inactive recepto	no	no	0.782	0.223	0.299	5e-12
C0LGQ9	1037	Probable LRR receptor-lik	no	no	0.755	0.217	0.320	9e-10
Q9C9H7	847	Receptor-like protein 12	no	no	0.765	0.270	0.300	2e-09
O65440	992	Leucine-rich repeat recep	no	no	0.675	0.203	0.308	3e-09
Q9C9N5	685	Probable inactive leucine	no	no	0.638	0.278	0.315	5e-09
Q9LRT1	1016	Probably inactive leucine	no	no	0.698	0.205	0.315	1e-08
Q6DIQ3	346	Protein phosphatase 1 reg	yes	no	0.511	0.442	0.329	1e-08
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.775	0.231	0.284	1e-08
Q5HZV9	360	Protein phosphatase 1 reg	yes	no	0.511	0.425	0.317	5e-08
Q9LP24	1120	Probable leucine-rich rep	no	no	0.779	0.208	0.312	5e-08

>sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 123/267 (46%), Gaps = 33/267 (12%)

Query: 31  HGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDD-GMSSDCCDDWEGVKCNA 89
           HG  A  ETE  +LLE +     + D     +I  SW         S C +DW G+ C+ 
Sbjct: 17  HGANAVTETELRSLLEFRK---GIRDETSHQRI--SWSDTSSLTDPSTCPNDWPGISCDP 71

Query: 90  TTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDS 149
            T  ++ ++L+           G +  L  S       L+ L L GN F+G    R   S
Sbjct: 72  ETGSIIAINLDRR---------GLSGELKFSTLSGLTRLRNLSLSGNSFSG----RVVPS 118

Query: 150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLD 209
            G +  L+ L+L DN F   I   ++ L SL  L LS N  EG     G  NL+ L+ LD
Sbjct: 119 LGGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGG-FPSGFRNLQQLRSLD 177

Query: 210 LSGNFNITSGSLTRLGLANLTNLKKLDLGSC-----GIT-TIQGLAKLKN-LEALDLSYN 262
           L  + N   G +  +    L N++ +DL SC     G++  ++ ++ + N L  L+LS+N
Sbjct: 178 L--HKNEIWGDVGEI-FTELKNVEFVDL-SCNRFNGGLSLPMENISSISNTLRHLNLSHN 233

Query: 263 YYIHS--SLEGLANLTNLQVLDLSDNQ 287
                  S E + +  NL+++DL +NQ
Sbjct: 234 ALNGKFFSEESIGSFKNLEIVDLENNQ 260

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 116/256 (45%), Gaps = 30/256 (11%)

Query: 43  ALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNA-TTRRVMQLSLNE 101
           ALLE K   I     G+   +L SW  E    +  C   W G+ CN      V+  +L  
Sbjct: 11  ALLEFKKG-IKHDPTGF---VLNSWNDESIDFNG-CPSSWNGIVCNGGNVAGVVLDNLGL 65

Query: 102 TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNL 161
           T   ++S            LF    +L +L +  N  +G+  N      GS K L+ L+L
Sbjct: 66  TADADFS------------LFSNLTKLVKLSMSNNSLSGVLPN----DLGSFKSLQFLDL 109

Query: 162 GDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSL 221
            DN F+ S+   +    SL  L LS N+  G    + +  L  LQ LD+S N    SG L
Sbjct: 110 SDNLFSSSLPKEIGRSVSLRNLSLSGNNFSG-EIPESMGGLISLQSLDMSSNS--LSGPL 166

Query: 222 TRLGLANLTNLKKLDLGSCGIT--TIQGLAKLKNLEALDLSYNYYIHSSLEG-LANLTNL 278
            +  L  L +L  L+L S G T    +G   + +LE LDL  N  I  +L+G    LTN 
Sbjct: 167 PK-SLTRLNDLLYLNLSSNGFTGKMPRGFELISSLEVLDLHGNS-IDGNLDGEFFLLTNA 224

Query: 279 QVLDLSDNQNLTTLGK 294
             +D+S N+ +TT GK
Sbjct: 225 SYVDISGNRLVTTSGK 240

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 109/253 (43%), Gaps = 24/253 (9%)

Query: 36  CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVM 95
           C + +R ALLE +  F     I     I+  W G  +  S+DCC  W GV CN  + +V+
Sbjct: 34  CRDDQRDALLEFRGEF----PINASWHIMNQWRGPWNK-STDCCL-WNGVTCNDKSGQVI 87

Query: 96  QLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQ 155
            L +  T   NY       L  N SLF   + L+ LDL      G        S G+L  
Sbjct: 88  SLDIPNTFLNNY-------LKTNSSLFK-LQYLRHLDLTNCNLYG----EIPSSLGNLSH 135

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215
           L ++NL  N F   I   +  L  L  LIL++N + G      L NL  L  L+L  N  
Sbjct: 136 LTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTG-EIPSSLGNLSRLVNLELFSNRL 194

Query: 216 ITSGSLTRLGLANLTNLKKLDLGSCGIT--TIQGLAKLKNLEALDLSYNYYIHSSLEGLA 273
           +  G +    + +L  L+ L L S  +       L  L NL  L L++N  +      + 
Sbjct: 195 V--GKIPD-SIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIG 251

Query: 274 NLTNLQVLDLSDN 286
           NL  L+V+   +N
Sbjct: 252 NLIELRVMSFENN 264

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 105/243 (43%), Gaps = 41/243 (16%)

Query: 82  WEGVKCNATTRRVMQLSLNE-----TIKFNYSSGSGSALLLNMS----------LFHPFE 126
           W GV C+   + + +L L+      TI    S  S S + L++S            +   
Sbjct: 66  WTGVSCDNLNQSITRLDLSNLNISGTISPEISRLSPSLVFLDISSNSFSGELPKEIYELS 125

Query: 127 ELQRLDLPGNWFTGIYENR------------AYD---------SFGSLKQLKMLNLGDNF 165
            L+ L++  N F G  E R            AYD         S  +L +L+ L+LG N+
Sbjct: 126 GLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGGNY 185

Query: 166 FNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLG 225
           F+  I     +  SL  L LS N + G R    LAN+  L  L L G +N   G +    
Sbjct: 186 FDGEIPRSYGSFLSLKFLSLSGNDLRG-RIPNELANITTLVQLYL-GYYNDYRGGIPA-D 242

Query: 226 LANLTNLKKLDLGSCGI--TTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL 283
              L NL  LDL +C +  +    L  LKNLE L L  N    S    L N+T+L+ LDL
Sbjct: 243 FGRLINLVHLDLANCSLKGSIPAELGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDL 302

Query: 284 SDN 286
           S+N
Sbjct: 303 SNN 305

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 104/241 (43%), Gaps = 50/241 (20%)

Query: 61  DKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLN-- 118
           D +  +W   D   S+ C   W+GV CN   R V     N+ +  +     GS L L   
Sbjct: 41  DSVFTNWNSSD---SNPC--SWQGVTCNYDMRVVSIRLPNKRLSGSLDPSIGSLLSLRHI 95

Query: 119 ------------MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFF 166
                       + LF   + LQ L L GN F+G       +  GSLK L  L+L +N F
Sbjct: 96  NLRDNDFQGKLPVELFG-LKGLQSLVLSGNSFSGFVP----EEIGSLKSLMTLDLSENSF 150

Query: 167 NDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGL 226
           N SI   L     L TL+LS NS  G       +NL +L+ L+LS  FN  +G++     
Sbjct: 151 NGSISLSLIPCKKLKTLVLSKNSFSGDLPTGLGSNLVHLRTLNLS--FNRLTGTIPE--- 205

Query: 227 ANLTNLKKLDLGSCGITTIQGLAKLKNLEA-LDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
                    D+GS           L+NL+  LDLS+N++       L NL  L  +DLS 
Sbjct: 206 ---------DVGS-----------LENLKGTLDLSHNFFSGMIPTSLGNLPELLYVDLSY 245

Query: 286 N 286
           N
Sbjct: 246 N 246

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 108/238 (45%), Gaps = 29/238 (12%)

Query: 55  SDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSA 114
           SD+      L SW  EDD  ++ C   W  VKCN  T RV++LSL+              
Sbjct: 45  SDLNDPFSHLESWT-EDD--NTPCS--WSYVKCNPKTSRVIELSLD-------------G 86

Query: 115 LLLNMSLFHPFEELQRLD---LPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171
           L L   +    ++LQRL    L  N FTG       ++  +   L+ L+L  N  +  I 
Sbjct: 87  LALTGKINRGIQKLQRLKVLSLSNNNFTG-----NINALSNNNHLQKLDLSHNNLSGQIP 141

Query: 172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGLANL 229
             L ++TSL  L L+ NS  G+ +     N   L+ L LS N        +L R  + N 
Sbjct: 142 SSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCSVLNS 201

Query: 230 TNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            NL + +  S   + + G+ +L+ L ALDLS N    S   G+ +L NL+ L L  NQ
Sbjct: 202 LNLSR-NRFSGNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHNLKELQLQRNQ 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DIQ3|PP1R7_XENTR Protein phosphatase 1 regulatory subunit 7 OS=Xenopus tropicalis GN=ppp1r7 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 20/173 (11%)

Query: 115 LLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL 174
           LL  +        LQRL L  N  + I      ++FG+L QL++L LG N     ++  L
Sbjct: 139 LLRRIEGLESLSHLQRLYLVNNKISRI------ENFGTLTQLRLLELGSNRL--RVIENL 190

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLK 233
           ++L  L +L L  N I   +  + L NL  L V          S  LT++ GL NL NL+
Sbjct: 191 DSLRELDSLFLGKNKITKLQNLETLTNLTVLSV---------QSNRLTKIEGLQNLVNLR 241

Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
           +L L   GI  I+GL     L  LDL+ N      +E + +L+ LQ   ++DN
Sbjct: 242 ELYLSDNGIQVIEGLENNNKLTTLDLASNRI--KRIENIKHLSELQEFWMNDN 292

Regulatory subunit of protein phosphatase 1.

Xenopus tropicalis (taxid: 8364)

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 123/288 (42%), Gaps = 56/288 (19%)

Query: 39  TERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLS 98
           TE  ALL +KS F     I     +L SW      +S+  C  W GV C+ + R V  L 
Sbjct: 26  TELHALLSLKSSFT----IDEHSPLLTSW-----NLSTTFCS-WTGVTCDVSLRHVTSLD 75

Query: 99  LNETIKFNYSSGSGS-----ALLLNMSL--------FHP----FEELQRLDLPGNWFTGI 141
           L+     N S    S      LL N+SL          P      EL+ L+L  N F G 
Sbjct: 76  LS---GLNLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGS 132

Query: 142 YEN---------RAYD------------SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSL 180
           + +         R  D            S  +L QL+ L+LG N+F+  I     T   L
Sbjct: 133 FPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVL 192

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC 240
             L +S N + G +    + NL  L+ L + G +N     L    + NL+ L + D  +C
Sbjct: 193 EYLAVSGNELTG-KIPPEIGNLTTLRELYI-GYYNAFENGLPP-EIGNLSELVRFDAANC 249

Query: 241 GIT--TIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
           G+T      + KL+ L+ L L  N +  +  + L  +++L+ +DLS+N
Sbjct: 250 GLTGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLISSLKSMDLSNN 297

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5HZV9|PP1R7_RAT Protein phosphatase 1 regulatory subunit 7 OS=Rattus norvegicus GN=Ppp1r7 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 20/173 (11%)

Query: 115 LLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL 174
           LL N+       +L++L L  N    I      ++  +L+QL+ML LG N      +  +
Sbjct: 153 LLRNIEGIDKLTQLKKLFLVNNKINKI------ENISTLQQLQMLELGSNRI--RAIENI 204

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLK 233
           +TLT+L +L L  N I   +    L+NL  L         ++ S  LT++ GL NL NL+
Sbjct: 205 DTLTNLESLFLGKNKITKLQNLDALSNLTVL---------SMQSNRLTKIEGLQNLVNLR 255

Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
           +L L   GI  I+GL     L  LD++ N      +E +++LT LQ   ++DN
Sbjct: 256 ELYLSHNGIEVIEGLENNNKLTMLDIASNRI--KKIENISHLTELQEFWMNDN 306

Regulatory subunit of protein phosphatase 1.

Rattus norvegicus (taxid: 10116)

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 115/266 (43%), Gaps = 33/266 (12%)

Query: 39  TERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLS 98
            E  ALL+ KS F + S        L SWV + +  +S  C  W GV CN+    + +L+
Sbjct: 32  AEANALLKWKSTFTNSSK-------LSSWVHDANTNTSFSCTSWYGVSCNSRGS-IEELN 83

Query: 99  LNET------IKFNYSSGSGSALL-LNMSL--------FHPFEELQRLDLPGNWFTGIYE 143
           L  T        F + S S  A + L+M+L        F    +L   DL  N  TG   
Sbjct: 84  LTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTG--- 140

Query: 144 NRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR 203
                S G+LK L +L L  N+    I   L  + S+T L LS N + GS     L NL+
Sbjct: 141 -EISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGS-IPSSLGNLK 198

Query: 204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT--TIQGLAKLKNLEALDLSY 261
            L VL L  N+ +T      LG  N+ ++  L L    +T      L  LKNL  L L  
Sbjct: 199 NLMVLYLYENY-LTGVIPPELG--NMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYE 255

Query: 262 NYYIHSSLEGLANLTNLQVLDLSDNQ 287
           NY        + N+ ++  L LS N+
Sbjct: 256 NYLTGVIPPEIGNMESMTNLALSQNK 281

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
297745031	869	unnamed protein product [Vitis vinifera]	0.846	0.291	0.438	5e-45
10177158	888	disease resistance protein-like [Arabido	0.839	0.282	0.414	5e-41
240256417	908	receptor like protein 56 [Arabidopsis th	0.839	0.276	0.406	3e-39
4432858	910	putative disease resistance protein [Ara	0.832	0.273	0.405	4e-39
12321378	1784	hypothetical protein [Arabidopsis thalia	0.809	0.135	0.403	1e-38
334183409	932	receptor like protein 9 [Arabidopsis tha	0.809	0.259	0.403	1e-38
12323813	951	disease resistance protein, putative; 63	0.856	0.269	0.414	2e-38
297821945	910	leucine-rich repeat family protein [Arab	0.832	0.273	0.394	6e-38
26449526	932	unknown protein [Arabidopsis thaliana] g	0.809	0.259	0.4	6e-38
145336750	457	putative disease resistance protein [Ara	0.842	0.551	0.388	2e-37

>gi|297745031|emb|CBI38623.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/283 (43%), Positives = 169/283 (59%), Gaps = 30/283 (10%)

Query: 19  SLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDC 78
           S IW ++++ +IHGYK CLE ER  LLE K F  S ++    D++LPSWV +++   SDC
Sbjct: 8   SWIWALMILIQIHGYKCCLEKERMGLLEFKRFLRSNNEDA--DRLLPSWVNDEE---SDC 62

Query: 79  CDDWEGVKCNATTRRVMQLSLN--ETIKFNYS----SGSGSALLLNMSLFHPFEELQRLD 132
           C  WE V CN+TT  V QLSLN    I+F +     +       LN+SLFHPFEEL  LD
Sbjct: 63  CY-WERVVCNSTTGTVTQLSLNNIRQIEFYHRVYGLAPPKKTWFLNVSLFHPFEELVSLD 121

Query: 133 LPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG 192
           L  NWF    E++ ++    LK+L+MLN+G N+FN+SI P +  LTSL  LIL +  +EG
Sbjct: 122 LSENWFADSLEDQGFEKLKGLKKLEMLNIGQNYFNNSIFPSVGALTSLRVLILRETKLEG 181

Query: 193 SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS---CGITTIQGLA 249
           S   +       L+VLDLS   N  +GS+    + NLT+L+ L L      G   ++G  
Sbjct: 182 SYLDR--VPFNNLEVLDLSN--NRFTGSIPPY-IWNLTSLQALSLADNQLTGPLPVEGFC 236

Query: 250 KLKNLEALDLSYNYYIHSSLEG-----LANLTNLQVLDLSDNQ 287
           KLKNL+ LDLS N     SL+G     L+N+ +L++LDLS NQ
Sbjct: 237 KLKNLQELDLSGN-----SLDGMFPPCLSNMRSLKLLDLSLNQ 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177158|dbj|BAB10347.1| disease resistance protein-like [Arabidopsis thaliana]

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 111/268 (41%), Positives = 154/268 (57%), Gaps = 17/268 (6%)

Query: 24  IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
           ++L+  +HG+ +C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  WE
Sbjct: 1   MLLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTND---TKSDCCQ-WE 56

Query: 84  GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYE 143
            +KCN T+RR+  LSL       Y+S      LLN+SL HPFEE++ LDL  +   G+ +
Sbjct: 57  NIKCNRTSRRLTGLSL-------YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVD 109

Query: 144 N-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202
           +   Y S   L+ L++LN   N FN+SI P+LN  TSLTTL L  N++ G    + L NL
Sbjct: 110 DVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNL 169

Query: 203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC---GITTIQGLAKLKNLEALDL 259
             L++LDLSG  N   GS+   GL NLTNL+ L LG     G   I+   ++KNL+ LDL
Sbjct: 170 TNLELLDLSG--NRIDGSMPVRGLKNLTNLEVLSLGYNYFDGPIPIEVFCEMKNLQELDL 227

Query: 260 SYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
               ++        NL  L+ LDLS NQ
Sbjct: 228 RGINFVGQLPLCFGNLNKLRFLDLSSNQ 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256417|ref|NP_199740.4| receptor like protein 56 [Arabidopsis thaliana] gi|332008410|gb|AED95793.1| receptor like protein 56 [Arabidopsis thaliana]

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/268 (40%), Positives = 151/268 (56%), Gaps = 17/268 (6%)

Query: 24  IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
           ++L+  +HG+ +C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  WE
Sbjct: 1   MLLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTND---TKSDCCQ-WE 56

Query: 84  GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYE 143
            +KCN T+RR+  LSL       Y+S      LLN+SL HPFEE++ LDL  +   G+ +
Sbjct: 57  NIKCNRTSRRLTGLSL-------YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVD 109

Query: 144 N-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202
           +   Y S   L+ L++LN   N FN+SI P+LN  TSLTTL L  N++ G    + L NL
Sbjct: 110 DVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNL 169

Query: 203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI---QGLAKLKNLEALDL 259
             L++LDLSG  N   GS+       L  LK LDL S GI +    Q   ++KNL+ LDL
Sbjct: 170 TNLELLDLSG--NRIDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDL 227

Query: 260 SYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
               ++        NL  L+ LDLS NQ
Sbjct: 228 RGINFVGQLPLCFGNLNKLRFLDLSSNQ 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4432858|gb|AAD20706.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 160/271 (59%), Gaps = 22/271 (8%)

Query: 24  IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
           ++L+ ++HG  +C+E ER ALLE+K + +S S     D +LP+W  +     SDCC  W+
Sbjct: 1   MLLLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTND---TKSDCCQ-WD 56

Query: 84  GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPG---NWFTG 140
           G+KCN T+ RV++LS+ + + F  SS       LN+SL HPFEE++ L+L     N F G
Sbjct: 57  GIKCNRTSGRVIELSVGD-MYFKESSP------LNLSLLHPFEEVRSLNLSTEGYNEFNG 109

Query: 141 IYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199
            +++   Y S   L+ LK+++L  N+FN S  P+LN  TSLTTLIL+ N ++G    +GL
Sbjct: 110 FFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGL 169

Query: 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC---GITTIQGLAKLKNLEA 256
            +L  L++LDL    N  +GS+    L NL NL+ L L      G   I+   KLKNL  
Sbjct: 170 KDLTNLELLDLRA--NKLNGSMQE--LQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRD 225

Query: 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           LDL  N+++      L +L  L+VLDLS NQ
Sbjct: 226 LDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQ 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12321378|gb|AAG50756.1|AC079131_1 hypothetical protein [Arabidopsis thaliana]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 162/270 (60%), Gaps = 28/270 (10%)

Query: 22  WIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDD 81
           W++V+  ++ GY +C+E ER  LLE+K++     +  YD      W  +     SDCC  
Sbjct: 14  WVMVVSLQMQGYISCIEKERKGLLELKAYV--NKEYSYD------WSND---TKSDCCR- 61

Query: 82  WEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGI 141
           WE V+C+ T+ RV+ L LN+T            +L+N+SLFHPFEEL+ L+L     TG 
Sbjct: 62  WERVECDRTSGRVIGLFLNQTF--------SDPILINLSLFHPFEELRTLNLYDFGCTGW 113

Query: 142 YEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200
           +++   Y S G LK+L++L++G+N  N+S+LP+LN  +SL TLIL  N++EG+   + L 
Sbjct: 114 FDDIHGYKSLGKLKKLEILDMGNNEVNNSVLPFLNAASSLRTLILHGNNMEGTFPMKELK 173

Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS---CGITTIQGLAKLKNLEAL 257
           +L  L++LDLSG  N+ +G +   GLA L  L  LDL      G    +GL +LKNL+ L
Sbjct: 174 DLSNLELLDLSG--NLLNGPVP--GLAVLHKLHALDLSDNTFSGSLGREGLCQLKNLQEL 229

Query: 258 DLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           DLS N +     +  ++LT LQVLD+S NQ
Sbjct: 230 DLSQNEFTGPFPQCFSSLTQLQVLDMSSNQ 259

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183409|ref|NP_176115.2| receptor like protein 9 [Arabidopsis thaliana] gi|332195389|gb|AEE33510.1| receptor like protein 9 [Arabidopsis thaliana]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 162/270 (60%), Gaps = 28/270 (10%)

Query: 22  WIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDD 81
           W++V+  ++ GY +C+E ER  LLE+K++     +  YD      W  +     SDCC  
Sbjct: 14  WVMVVSLQMQGYISCIEKERKGLLELKAYV--NKEYSYD------WSND---TKSDCCR- 61

Query: 82  WEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGI 141
           WE V+C+ T+ RV+ L LN+T            +L+N+SLFHPFEEL+ L+L     TG 
Sbjct: 62  WERVECDRTSGRVIGLFLNQTF--------SDPILINLSLFHPFEELRTLNLYDFGCTGW 113

Query: 142 YEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200
           +++   Y S G LK+L++L++G+N  N+S+LP+LN  +SL TLIL  N++EG+   + L 
Sbjct: 114 FDDIHGYKSLGKLKKLEILDMGNNEVNNSVLPFLNAASSLRTLILHGNNMEGTFPMKELK 173

Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS---CGITTIQGLAKLKNLEAL 257
           +L  L++LDLSG  N+ +G +   GLA L  L  LDL      G    +GL +LKNL+ L
Sbjct: 174 DLSNLELLDLSG--NLLNGPVP--GLAVLHKLHALDLSDNTFSGSLGREGLCQLKNLQEL 229

Query: 258 DLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           DLS N +     +  ++LT LQVLD+S NQ
Sbjct: 230 DLSQNEFTGPFPQCFSSLTQLQVLDMSSNQ 259

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323813|gb|AAG51872.1|AC079678_2 disease resistance protein, putative; 6346-10057 [Arabidopsis thaliana]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/282 (41%), Positives = 167/282 (59%), Gaps = 26/282 (9%)

Query: 15  FSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFIS-VSDIGYDDKILPSWVGEDDG 73
           FS  +LIW+++L+ ++ GYK C+E ER ALLE+K + IS  +D G D  +LP+W  +   
Sbjct: 6   FSGQNLIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLD-SVLPTWTND--- 61

Query: 74  MSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDL 133
             S+CC  WEG+KCN T+ R+++LS+ +T   N+   S       +SL HPFEEL+ L+L
Sbjct: 62  TKSNCCR-WEGLKCNQTSGRIIELSIGQT---NFKESSLLN----LSLLHPFEELRSLNL 113

Query: 134 PG---NWFTGIYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS 189
            G   N F G++++   Y+S   L+ L++L+L  N FN+SI P+LN  TSLTTL +  N 
Sbjct: 114 SGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNY 173

Query: 190 IEGSRTKQGLANLRYLQVLDLS-GNFNITSGSLTRLGLANLTNLKKLDLGSC---GITTI 245
           I G    + L NL  L++LDLS   +N   GS+  L +  LTNL+ L L      G    
Sbjct: 174 IGGPLPIKELKNLTKLELLDLSRSGYN---GSIPELKV--LTNLEVLGLAWNHLDGPIPK 228

Query: 246 QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           +   ++KNL  LDL  NY+       L NL  L+VLDLS NQ
Sbjct: 229 EVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQ 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821945|ref|XP_002878855.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324694|gb|EFH55114.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/271 (39%), Positives = 156/271 (57%), Gaps = 22/271 (8%)

Query: 24  IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
           ++L+ ++HG K C+  ER ALLE+K + +S S     D +LP+W  +     SDCC  W+
Sbjct: 1   MLLLGQLHGCKGCIMKEREALLELKKYLMSRSRESGLDYVLPTWTND---TKSDCCQ-WD 56

Query: 84  GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPG---NWFTG 140
           G+KCN T+RRV+ LS+ + + F  SS       LN+SL HPFEE++ L+L     N F G
Sbjct: 57  GIKCNRTSRRVIGLSVGD-MYFKESSP------LNLSLLHPFEEVRSLNLSTEGYNEFNG 109

Query: 141 IYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199
            +++   Y S   L+ L++++L  N+FN SI P+LN  TSLTT+ L+ N ++G    +GL
Sbjct: 110 FFDDVEGYRSLSRLRNLQIMDLSTNYFNYSIFPFLNAATSLTTIFLTYNEMDGPFPIKGL 169

Query: 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC---GITTIQGLAKLKNLEA 256
            +L  L++LDL    N   GS+    L NL NL+ L L      G   I+    +KNL  
Sbjct: 170 KDLTNLELLDLRA--NKLKGSMQE--LKNLINLEVLGLAQNHVDGPIPIEVFCNIKNLRE 225

Query: 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           LDL  N+++      L  L  L+VLDLS NQ
Sbjct: 226 LDLRGNHFVGQLPICLGRLKKLRVLDLSSNQ 256

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26449526|dbj|BAC41889.1| unknown protein [Arabidopsis thaliana] gi|29029064|gb|AAO64911.1| At1g58190 [Arabidopsis thaliana] gi|62319855|dbj|BAD93894.1| hypothetical protein [Arabidopsis thaliana]

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 161/270 (59%), Gaps = 28/270 (10%)

Query: 22  WIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDD 81
           W++V+  ++ GY +C+E ER  LLE+K++     +  YD      W  +     SDCC  
Sbjct: 14  WVMVVSLQMQGYISCIEKERKGLLELKAYV--NKEYSYD------WSND---TKSDCCR- 61

Query: 82  WEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGI 141
           WE V+C+ T+ RV+ L LN+T            +L+N+SLFHPFEEL+ L+L     TG 
Sbjct: 62  WERVECDRTSGRVIGLFLNQTF--------SDPILINLSLFHPFEELRTLNLYDFGCTGW 113

Query: 142 YEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200
           +++   Y S G LK+L++L++G+N  N+S+LP+LN  +SL TLIL  N++E +   + L 
Sbjct: 114 FDDIHGYKSLGKLKKLEILDMGNNEVNNSVLPFLNAASSLRTLILHGNNMESTFPMKELK 173

Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS---CGITTIQGLAKLKNLEAL 257
           +L  L++LDLSG  N+ +G +   GLA L  L  LDL      G    +GL +LKNL+ L
Sbjct: 174 DLSNLELLDLSG--NLLNGPVP--GLAVLHKLHALDLSDNTFSGSLGREGLCQLKNLQEL 229

Query: 258 DLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           DLS N +     +  ++LT LQVLD+S NQ
Sbjct: 230 DLSQNEFTGPFPQCFSSLTQLQVLDMSSNQ 259

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336750|ref|NP_175849.2| putative disease resistance protein [Arabidopsis thaliana] gi|332194986|gb|AEE33107.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/273 (38%), Positives = 161/273 (58%), Gaps = 21/273 (7%)

Query: 20  LIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCC 79
           LIW+I+L+ ++H  K+C+E ER ALL+ K +++S++     D + P+W   ++   SDCC
Sbjct: 110 LIWVILLLGQLHECKSCIEKERVALLDFKKYWMSITQESDLDYVFPTW---NNDTKSDCC 166

Query: 80  DDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFT 139
             WE + CN T+ R+++L +  +   N    S    LLN+SL HPFEE++ L+L      
Sbjct: 167 -QWESIMCNPTSGRLIRLHVGAS---NLKENS----LLNISLLHPFEEVRSLELSAG-LN 217

Query: 140 GIYEN-RAYDSFGSLKQLKMLNLG-DNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ 197
           G  +N   Y S   LK L++L+L  +N FN++ILP++N  TSLT+L L +NS+EG    +
Sbjct: 218 GFVDNVEGYKSLRKLKNLEILDLSYNNRFNNNILPFINAATSLTSLSLQNNSMEGPFPFE 277

Query: 198 GLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS---CGITTIQGLAKLKNL 254
            + +L  L++LDLS   NI  G +   GL +L  LK LDL +     I  +Q + ++KNL
Sbjct: 278 EIKDLTNLKLLDLSR--NILKGPMQ--GLTHLKKLKALDLSNNVFSSIMELQVVCEMKNL 333

Query: 255 EALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
             LDL  N ++      L  L  L+VLDLS NQ
Sbjct: 334 WELDLRENKFVGQLPLCLGRLNKLRVLDLSSNQ 366

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.849	0.260	0.371	5.4e-40
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.839	0.276	0.373	6.5e-35
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.869	0.269	0.343	1.1e-33
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.829	0.265	0.357	4.3e-32
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.685	0.230	0.372	7.6e-25
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.795	0.219	0.333	1.7e-24
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.715	0.214	0.331	5.3e-12
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.886	0.368	0.296	1.9e-11
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.785	0.249	0.288	3.7e-11
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.892	0.305	0.280	4.5e-11

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 5.4e-40, Sum P(2) = 5.4e-40
 Identities = 105/283 (37%), Positives = 160/283 (56%)

Query:    15 FSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFFIS-VSDIGYDDKILPSWVGEDDG 73
             FS  +LIW+++L+ ++ GYK C+E ER ALLE+K + IS  +D G D  +LP+W  +   
Sbjct:     6 FSGQNLIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLDS-VLPTWTNDT-- 62

Query:    74 MSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDL 133
               S+CC  WEG+KCN T+ R+++LS+ +T   N+   S    LLN+SL HPFEEL+ L+L
Sbjct:    63 -KSNCCR-WEGLKCNQTSGRIIELSIGQT---NFKESS----LLNLSLLHPFEELRSLNL 113

Query:   134 PG---NWFTGIYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXX 189
              G   N F G++++   Y+S   L+ L++L+L  N FN+SI P+                
Sbjct:   114 SGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNY 173

Query:   190 XEGSRTKQGLANLRYLQVLDLS-GNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL 248
               G    + L NL  L++LDLS   +N   GS+      +L  LK LDL +   +++  L
Sbjct:   174 IGGPLPIKELKNLTKLELLDLSRSGYN---GSIPEF--THLEKLKALDLSANDFSSLVEL 228

Query:   249 AKLK---NLEALDLSYNYYIHSSL--EGLANLTNLQVLDLSDN 286
              +LK   NLE L L++N+ +   +  E    + NL+ LDL  N
Sbjct:   229 QELKVLTNLEVLGLAWNH-LDGPIPKEVFCEMKNLRQLDLRGN 270

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 100/268 (37%), Positives = 140/268 (52%)

Query:    24 IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
             ++L+  +HG+ +C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  WE
Sbjct:     1 MLLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDT---KSDCCQ-WE 56

Query:    84 GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYE 143
              +KCN T+RR+  LSL       Y+S      LLN+SL HPFEE++ LDL  +   G+ +
Sbjct:    57 NIKCNRTSRRLTGLSL-------YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVD 109

Query:   144 N-RAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTKQGLANL 202
             +   Y S   L+ L++LN   N FN+SI P+                  G    + L NL
Sbjct:   110 DVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNL 169

Query:   203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI---QGLAKLKNLEALDL 259
               L++LDLSGN  I  GS+       L  LK LDL S GI +    Q   ++KNL+ LDL
Sbjct:   170 TNLELLDLSGN-RI-DGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDL 227

Query:   260 SYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
                 ++        NL  L+ LDLS NQ
Sbjct:   228 RGINFVGQLPLCFGNLNKLRFLDLSSNQ 255

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 1.1e-33, P = 1.1e-33
 Identities = 102/297 (34%), Positives = 164/297 (55%)

Query:    19 SLIWIIVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDC 78
             +LIW+++LM ++HGYK+C++ E+ AL E++   IS ++    + +LP+W  +    +SDC
Sbjct:    10 NLIWVMLLMGQLHGYKSCIDEEKIALFELRKHMISRTE---SESVLPTWTNDT---TSDC 63

Query:    79 CDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW 137
             C  W+GV CN  + RV ++S    ++K N         LLN+SL HPFE+++ L+L  + 
Sbjct:    64 CR-WKGVACNRVSGRVTEISFGGLSLKDNS--------LLNLSLLHPFEDVRSLNLSSSR 114

Query:   138 FTGIYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTK 196
              +G++++   Y S   L++L++L+L  N FN+SI  +                 +GS   
Sbjct:   115 CSGLFDDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPA 174

Query:   197 QGLANLRYLQVLDLSGN-FNITSGSLTRLGLANLTNLKKLDL------GS-------CG- 241
             + L +L  L++LDLS N FN   GS+    L++L  LK LDL      GS       C  
Sbjct:   175 KELRDLTNLELLDLSRNRFN---GSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTD 231

Query:   242 -ITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296
              + +IQ G+ +L N++ LDLS N  +      L +LT L+VLDLS N+   T+   L
Sbjct:   232 LLFSIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSL 288

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 4.3e-32, P = 4.3e-32
 Identities = 97/271 (35%), Positives = 146/271 (53%)

Query:    24 IVLMNEIHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWE 83
             ++L+ ++HG  +C+E ER ALLE+K + +S S     D +LP+W  +     SDCC  W+
Sbjct:     1 MLLLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDT---KSDCCQ-WD 56

Query:    84 GVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLP--G-NWFTG 140
             G+KCN T+ RV++LS+ + + F  SS       LN+SL HPFEE++ L+L   G N F G
Sbjct:    57 GIKCNRTSGRVIELSVGD-MYFKESSP------LNLSLLHPFEEVRSLNLSTEGYNEFNG 109

Query:   141 IYEN-RAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTKQGL 199
              +++   Y S   L+ LK+++L  N+FN S  P+                 +G    +GL
Sbjct:   110 FFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGL 169

Query:   200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT---IQGLAKLKNLEA 256
              +L  L++LDL  N    +GS+  L   +L  LK LDL S   ++   +Q L  L NLE 
Sbjct:   170 KDLTNLELLDLRANK--LNGSMQEL--IHLKKLKALDLSSNKFSSSMELQELQNLINLEV 225

Query:   257 LDLSYNYYIHS-SLEGLANLTNLQVLDLSDN 286
             L L+ N+      +E    L NL+ LDL  N
Sbjct:   226 LGLAQNHVDGPIPIEVFCKLKNLRDLDLKGN 256

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 82/220 (37%), Positives = 116/220 (52%)

Query:    74 MSSD--CCDDWEGVKCNATTRRVMQLSLN-ETIKFNYSSGSGSALLLNMSLFHPFEELQR 130
             MSSD  CC  W  +KC+ T++RV+ +SL+ E+I+            LN++ F+PFEELQ 
Sbjct:     1 MSSDRSCCH-WRRIKCDITSKRVIGISLSLESIR-----PPDPLPQLNLTFFYPFEELQS 54

Query:   131 LDLPGNWFTGIYENR-AYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXX 189
             L+L   +F G ++ R      GSL+ L+ L+LG NF++ S+LPY                
Sbjct:    55 LNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNL 114

Query:   190 XEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS---CGITTIQ 246
              +G    Q L NL  L+VLDL   FN  SG L    L NL NL+ LDL +    G    Q
Sbjct:   115 FKGGFPVQELINLTSLEVLDLK--FNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQ 172

Query:   247 GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
             G+ +L+ L+ L LS N +        +  + L+VLDLS N
Sbjct:   173 GICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSN 212

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 86/258 (33%), Positives = 132/258 (51%)

Query:    44 LLEIKSFFISVSDIGYDDK----ILPSWVGEDDGMSSDCCDDWEGVKCN-ATTRRVMQLS 98
             LL++KS+  ++ D   +++    IL SW   +     DCC  WE VKC+ A    V+ LS
Sbjct:     3 LLQLKSYLKNLVDAEEEEEEGLSILKSWTHHE----GDCCR-WERVKCSDAINGHVIGLS 57

Query:    99 LNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYEN-RAYDSFGSLKQLK 157
             L+  +   + S + S   LN+SL H F +LQ L+L  NWFT + ++   + SFG+L +L 
Sbjct:    58 LDRLVPVAFESQTRS---LNLSLLHSFPQLQSLNLSWNWFTNLSDHFLGFKSFGTLDKLT 114

Query:   158 MLNLGDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTKQGLANLRYLQVLDLSGNFNIT 217
              L+   N F++SI+P+                 EG    Q L+N+  L+VL+L  N   +
Sbjct:   115 TLDFSHNMFDNSIVPFLNAATSIRSLHLESNYMEGVFPPQELSNMTNLRVLNLKDN---S 171

Query:   218 SGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKN--LEALDLSYNYYIH-SSLEGLAN 274
                L+  GL +  +L+ LDL   G+   +    L    L+ LDL++N     S L+GL +
Sbjct:   172 FSFLSSQGLTDFRDLEVLDLSFNGVNDSEASHSLSTAKLKTLDLNFNPLSDFSQLKGLES 231

Query:   275 LTNLQVLDLSDNQNLTTL 292
             L  LQVL L  N+   TL
Sbjct:   232 LQELQVLKLRGNKFNHTL 249

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 5.3e-12, P = 5.3e-12
 Identities = 82/247 (33%), Positives = 112/247 (45%)

Query:    70 EDDGMSSDCCDDWEGVKCNATTRR--VMQLS---LNETI-KFNYSSGSGSALLLNMSLFH 123
             ED G S    DD EG K  +  R   ++ LS    N +I  F  ++ S + L L  +  H
Sbjct:    51 EDCGFSG-LFDDVEGYKSLSRLRNLEILDLSSHRFNNSIFPFLNAATSLTTLFLTYNNMH 109

Query:   124 -PF--EE------LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYX 174
              PF  +E      L+ LDL GN F G    + Y+S    ++L++L+L DN FN  I P+ 
Sbjct:   110 SPFLVKEFKDLTNLEHLDLRGNRFNGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPFL 169

Query:   175 XXXXXXXXXXXXXXXXEGSRTKQGLANLRYLQVLDLSGN-FNITSGSLTRLGLANLTNLK 233
                              G    + L +L  +++LDLS N FN   GS+    L  L  LK
Sbjct:   170 NSATSLKSLSLWGNNMGGPFPAKELRDLTNVELLDLSRNRFN---GSIPVRALFALRKLK 226

Query:   234 KLDLGSCGITT---IQG-LAKLK---------NLEALDLSYNYYIHSSLEGLANLTNLQV 280
              LDL     ++   +QG  AK K         N+E L LS N         L +LT L+V
Sbjct:   227 ALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRV 286

Query:   281 LDLSDNQ 287
             LDLS NQ
Sbjct:   287 LDLSSNQ 293

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 89/300 (29%), Positives = 134/300 (44%)

Query:    13 IKFSLMSLIWIIVLMNE-----IHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSW 67
             +K ++ SL  I+ L N       H    C + ++ ALLE K+ F  V +    + I+   
Sbjct:     1 MKMTIWSLCLILSLSNSKLVLASHVKHLCRQDQKNALLEFKNEFY-VHEFN-SNGIVGVK 58

Query:    68 VGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEE 127
               E    ++DCC  W+G+ C+  T +V++L L  +    + +G    L  + SLF   + 
Sbjct:    59 KTEKWRNNTDCCS-WDGISCDPKTGKVVELDLMNS----FLNGP---LRYDSSLFR-LQH 109

Query:   128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGD-NFFNDSILPYXXXXXXXXXXXXX 186
             L  LDL  N F+GI      DS GSLK L++L+LGD N F    +P              
Sbjct:   110 LHNLDLGSNNFSGILP----DSIGSLKYLRVLSLGDCNLFGK--IPSSLGNLTYLTNLDL 163

Query:   187 XXXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS--CGITT 244
                         + +L  L  L L G+  + SG+   + L NL+ L  +DLGS   G   
Sbjct:   164 SVNDFTGELPDSMGHLNKLTELHL-GSAKL-SGNFPSM-LLNLSELTLIDLGSNQFGGML 220

Query:   245 IQGLAKLKNLEALDLSYNYY---IHSSLEGLANLTNLQVLDLSD-NQNLT--TLGKPLNL 298
                ++ L  L    +  N +   I SSL  L +LT+L VL  +D N  L    +  P NL
Sbjct:   221 PSNMSSLSKLVYFGIDRNSFSGSIPSSLFMLPSLTSL-VLGRNDFNGPLDFGNISSPSNL 279

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 75/260 (28%), Positives = 110/260 (42%)

Query:    36 CLETERTALLEIKSFFI----SVSDIGY--DDKILPSWVGEDDGMSSDCCDDWEGVKCNA 89
             CL  +R ALLE+K+ F     S +D  Y  + ++ P    E    +SDCC+ WEG+ C+ 
Sbjct:    38 CLPEQRDALLELKNEFEIGKPSSNDYCYRNNSRVSPHPTTESWRNNSDCCN-WEGITCDT 96

Query:    90 TTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDS 149
              +  V++L L+    + Y S        N SLF   + L+ LDL  N   G   +    S
Sbjct:    97 KSGEVIELDLS--CSWLYGSFHS-----NSSLFR-LQNLRVLDLTQNDLDGEIPS----S 144

Query:   150 FGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTKQGLANLRYLQVLD 209
              G+L  L  L+L  N F   ++P                     +    + NL +L  L+
Sbjct:   145 IGNLSHLTSLHLSYNQFL-GLIPSSIENLSRLTSLHLSSNQFSGQIPSSIGNLSHLTSLE 203

Query:   210 LSGNFNITSGSLTRLGLANLTNLKKLDLGSCGI--TTIQGLAKLKNLEALDLSYNYYIHS 267
             LS N    SG +    + NL+NL  L L S          +  L  L  L LSYN ++  
Sbjct:   204 LSSNQ--FSGQIPS-SIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNNFVGE 260

Query:   268 SLEGLANLTNLQVLDLSDNQ 287
                   NL  L VL +  N+
Sbjct:   261 IPSSFGNLNQLIVLQVDSNK 280

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 84/299 (28%), Positives = 123/299 (41%)

Query:     5 SAMETTSFIKFSLMSLIWIIVLMNEIHGYKACLETERTALLEIKSFF-ISVSDIGYDDKI 63
             S +  T +  F   S    +  +  IH    C   +R ALLE K+ F I     G    +
Sbjct:     2 SLIPITFYFLFLFFSNFRGVFAVPNIH---LCHFEQRDALLEFKNEFKIKKPCFGCPSPL 58

Query:    64 -LPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLF 122
                SW   ++G  SDCC  W+G+ C+A T  V+++ L  +    +   +      N+S+ 
Sbjct:    59 KTKSW---ENG--SDCCH-WDGITCDAKTGEVIEIDLMCSCLHGWFHSNS-----NLSML 107

Query:   123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXX 182
               F  L  LDL  N  +G    +   S G+L  L  L+L  N F+  I P          
Sbjct:   108 QNFHFLTTLDLSYNHLSG----QISSSIGNLSHLTTLDLSGNNFSGWI-PSSLGNLFHLT 162

Query:   183 XXXXXXXXEGSRTKQGLANLRYLQVLDLS-GNF--NITS--GSLTRLGLANLTNLKKLDL 237
                      G      L NL YL  LDLS  NF   I S  GSL +L +  L N  KL  
Sbjct:   163 SLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDN-NKLS- 220

Query:   238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296
             G+  +  I     L  L  + LS+N +  +    + +L+ L+    S N  + T+   L
Sbjct:   221 GNLPLEVIN----LTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSL 275

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030803001 SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (268 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ LDL  N  +G       +  GS   LK+L+LG N     I   L  LTSL  L L+ 
Sbjct: 142 LETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT--TI 245
           N + G   ++ L  ++ L+ + L  N N++      +G   LT+L  LDL    +T    
Sbjct: 198 NQLVGQIPRE-LGQMKSLKWIYLGYN-NLSGEIPYEIG--GLTSLNHLDLVYNNLTGPIP 253

Query: 246 QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
             L  LKNL+ L L  N         + +L  L  LDLSDN
Sbjct: 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 78/273 (28%), Positives = 112/273 (41%), Gaps = 47/273 (17%)

Query: 36  CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRV- 94
            L  E   LL   SF  S++D     K L +W       S+D C  W+G+ CN ++R V 
Sbjct: 25  MLHAEELELL--LSFKSSIND---PLKYLSNW-----NSSADVCL-WQGITCNNSSRVVS 73

Query: 95  ----------------MQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWF 138
                            +L   +TI  + +  SG    +   +F     L+ L+L  N F
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP---IPDDIFTTSSSLRYLNLSNNNF 130

Query: 139 TGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198
           TG          GS+  L+ L+L +N  +  I   + + +SL  L L  N + G +    
Sbjct: 131 TGSIPR------GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNS 183

Query: 199 LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLG----SCGITTIQGLAKLKNL 254
           L NL  L+ L L+ N  +       LG   + +LK + LG    S  I    G   L +L
Sbjct: 184 LTNLTSLEFLTLASN-QLVGQIPRELG--QMKSLKWIYLGYNNLSGEIPYEIG--GLTSL 238

Query: 255 EALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
             LDL YN         L NL NLQ L L  N+
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 57/161 (35%), Positives = 75/161 (46%), Gaps = 10/161 (6%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  LDL  N  TG        S G+LK L+ L L  N  +  I P + +L  L +L LSD
Sbjct: 238 LNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT--TI 245
           NS+ G    + +  L+ L++L L  N N T G +    L +L  L+ L L S   +    
Sbjct: 294 NSLSG-EIPELVIQLQNLEILHLFSN-NFT-GKIPV-ALTSLPRLQVLQLWSNKFSGEIP 349

Query: 246 QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
           + L K  NL  LDLS N       EGL +  NL  L L  N
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207
           +    L+ L+ +NL  N    +I P L ++TSL  L LS NS  GS   + L  L  L++
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRI 494

Query: 208 LDLSGNF------NITSGSLTRLGLANLTNLKKLDLGSCGI 242
           L+L+GN           G L      N T+    + G CGI
Sbjct: 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTD----NAGLCGI 531

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 231 NLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           NLK LDL +  +T I       L NL+ LDLS N     S E  + L +L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 26/185 (14%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
           F  L+ LDL GN   G   N    S  +L  L+ L L  N     I   L  + SL  + 
Sbjct: 163 FSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218

Query: 185 LSDNSIEGSRTKQ--GLANLRYLQVL--DLSGNFNITSGSLTRL---------------- 224
           L  N++ G    +  GL +L +L ++  +L+G    + G+L  L                
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 225 GLANLTNLKKLDLGSCGIT--TIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLD 282
            + +L  L  LDL    ++    + + +L+NLE L L  N +       L +L  LQVL 
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Query: 283 LSDNQ 287
           L  N+
Sbjct: 339 LWSNK 343

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 64/214 (29%), Positives = 86/214 (40%), Gaps = 35/214 (16%)

Query: 97  LSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQL 156
           LSLNET            L   +        LQ LDL  N   G       +S      L
Sbjct: 58  LSLNETG------RIPRGLQSLLQGLTKGCGLQELDLSDNAL-GPDGCGVLESLLRSSSL 110

Query: 157 KMLNLGDNFFNDSILPYLNT-LTS----LTTLILSDNSIEGSRTKQGLANL----RYLQV 207
           + L L +N   D  L  L   L      L  L+L  N +EG+  +  LA      R L+ 
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA-LAKALRANRDLKE 169

Query: 208 LDLSGNFNITSGSLTRL--GLANLTNLKKLDLGSCGITTI------QGLAKLKNLEALDL 259
           L+L+ N  I    +  L  GL    NL+ LDL + G+T        + LA LK+LE L+L
Sbjct: 170 LNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228

Query: 260 SYN-------YYIHSSLEGLANLTNLQVLDLSDN 286
             N         + S+L  L+   +L  L LS N
Sbjct: 229 GDNNLTDAGAAALASAL--LSPNISLLTLSLSCN 260

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              LQ ++L GN   G        S GS+  L++L+L  N FN SI   L  LTSL  L 
Sbjct: 441 LRHLQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 185 LSDNSIEG 192
           L+ NS+ G
Sbjct: 497 LNGNSLSG 504

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 8/155 (5%)

Query: 144 NRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR 203
           +       +L  L  L+L  N  +D + P +  L++L  L LS+NSI        L+NL+
Sbjct: 176 SDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII--ELLSSLSNLK 232

Query: 204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNY 263
            L  L+LS N            + NL+NL+ LDL +  I++I  L  L NL  LDLS N 
Sbjct: 233 NLSGLELSNNKLEDLPES----IGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN- 287

Query: 264 YIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLNL 298
            + ++L  +A L  L  L L+    L  L   LN 
Sbjct: 288 SLSNALPLIALLLLLLELLLNLLLTLKALELKLNS 322

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 56/156 (35%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL 208
           +  +L  L  L+L  N    +I   L  LT+LT+L L +N+I       GL     L+ L
Sbjct: 88  NLLNLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSN-LKEL 145

Query: 209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHS 267
           DLS N  I S       L NL NLK LDL    ++ +   L+ L NL  LDLS N    S
Sbjct: 146 DLSDN-KIES---LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI--S 199

Query: 268 SLEGLAN-LTNLQVLDLSDN---QNLTTLGKPLNLR 299
            L      L+ L+ LDLS+N   + L++L    NL 
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS 235

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 46/157 (29%), Positives = 61/157 (38%), Gaps = 31/157 (19%)

Query: 131 LDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSI 190
           LD+  N   G   +R +D    +  L+ML+L  N F    LP       L  L LS N  
Sbjct: 433 LDISNNNLQGRINSRKWD----MPSLQMLSLARNKFFGG-LPDSFGSKRLENLDLSRNQF 487

Query: 191 EGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK 250
            G+   + L +L  L  L LS N    SG +              +L SC          
Sbjct: 488 SGA-VPRKLGSLSELMQLKLSEN--KLSGEIPD------------ELSSC---------- 522

Query: 251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            K L +LDLS+N          + +  L  LDLS NQ
Sbjct: 523 -KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 230 TNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLAN 274
           TNL+ LDL +  IT +  L+ L NLE LDLS N    + L  L+N
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNK--ITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 54/191 (28%), Positives = 75/191 (39%), Gaps = 26/191 (13%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSL---KQLKMLNLGDNF------FNDSI 170
            L      LQ L L       + E  A     +L     LK L L  N          S+
Sbjct: 17  ELLPKLLCLQVLRL---EGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL 73

Query: 171 LPYLNTLTSLTTLILSDNSI--EGSRTKQGLANLRYLQVLDLSGN-FNITSGSLTRLGLA 227
           L  L     L  L LSDN++  +G    + L     LQ L L+ N        L   GL 
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK 133

Query: 228 NLT-NLKKLDLGSCGIT------TIQGLAKLKNLEALDLSYNYY----IHSSLEGLANLT 276
           +L   L+KL LG   +         + L   ++L+ L+L+ N      I +  EGL    
Sbjct: 134 DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC 193

Query: 277 NLQVLDLSDNQ 287
           NL+VLDL++N 
Sbjct: 194 NLEVLDLNNNG 204

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 9/161 (5%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  LDL  N  TG       +   S   L  L L  N     I   L    SL  + L D
Sbjct: 358 LTVLDLSTNNLTG----EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT-TIQ 246
           NS  G         L  +  LD+S N N+     +R    ++ +L+ L L        + 
Sbjct: 414 NSFSG-ELPSEFTKLPLVYFLDISNN-NLQGRINSRKW--DMPSLQMLSLARNKFFGGLP 469

Query: 247 GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
                K LE LDLS N +  +    L +L+ L  L LS+N+
Sbjct: 470 DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 11/63 (17%)

Query: 205 LQVLDLSGNFNITSGSLTRLG---LANLTNLKKLDLGSCGITTI--QGLAKLKNLEALDL 259
           L+ LDLS N       LT +       L NLK LDL    +T+I  +  + L +L +LDL
Sbjct: 2   LKSLDLSNN------RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDL 55

Query: 260 SYN 262
           S N
Sbjct: 56  SGN 58

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 10/52 (19%)

Query: 37 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCN 88
          L  +R ALL  KS              L SW        SD C  W GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPS-----GALSSWNPSS----SDPCS-WTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLG 238
           +L +L LS+N +           L  L+VLDLSGN N+TS  ++    + L +L+ LDL 
Sbjct: 1   NLKSLDLSNNRLTVIPDGA-FKGLPNLKVLDLSGN-NLTS--ISPEAFSGLPSLRSLDLS 56

Query: 239 SCGI 242
              +
Sbjct: 57  GNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.73
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.69
PLN03150	623	hypothetical protein; Provisional	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.57
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.49
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.46
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.44
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.44
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.44
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.41
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.37
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.35
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.35
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.3
PLN03150	623	hypothetical protein; Provisional	99.29
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.26
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.91
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.79
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.77
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.65
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.59
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.53
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.45
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.45
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.2
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.19
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.07
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.05
PRK15386	426	type III secretion protein GogB; Provisional	98.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.58
PRK15386	426	type III secretion protein GogB; Provisional	97.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.23
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.0
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.85
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.75
KOG4308	478	consensus LRR-containing protein [Function unknown	96.19
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.97
KOG4308	478	consensus LRR-containing protein [Function unknown	95.84
KOG4341	483	consensus F-box protein containing LRR [General fu	95.74
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.62
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.51
KOG4341	483	consensus F-box protein containing LRR [General fu	92.16
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.08
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.42
smart00370	26	LRR Leucine-rich repeats, outliers.	91.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.34
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.72
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.14
smart00370	26	LRR Leucine-rich repeats, outliers.	90.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.04
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.88
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	80.1

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=9.4e-30  Score=256.30  Aligned_cols=232  Identities=28%  Similarity=0.422  Sum_probs=155.4

Q ss_pred             hHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCcEEEeeeCc-cccccccCCCCccc
Q 022302           37 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSAL  115 (299)
Q Consensus        37 ~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~-~l~~~~~~~~~~~~  115 (299)
                      .+.|+.||++||+++.++.      +.+.+|+.     ..+|| .|.||+|+. .++|+.|++++ ++.+..        
T Consensus        27 ~~~~~~~l~~~~~~~~~~~------~~~~~w~~-----~~~~c-~w~gv~c~~-~~~v~~L~L~~~~i~~~~--------   85 (968)
T PLN00113         27 HAEELELLLSFKSSINDPL------KYLSNWNS-----SADVC-LWQGITCNN-SSRVVSIDLSGKNISGKI--------   85 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCc------ccCCCCCC-----CCCCC-cCcceecCC-CCcEEEEEecCCCccccC--------
Confidence            5589999999999997653      46789976     56889 999999985 57999999998 666532        


Q ss_pred             cccccccCCCCCccEEeCCCCCCCCcchhhhHH-------------------hhcCCCCCCEEECCCCCCCccchHhhcc
Q 022302          116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD-------------------SFGSLKQLKMLNLGDNFFNDSILPYLNT  176 (299)
Q Consensus       116 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  176 (299)
                         +..+..+++|+.|++++|.+.+.+|.....                   ....+++|++|++++|.+++.+|..++.
T Consensus        86 ---~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~  162 (968)
T PLN00113         86 ---SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS  162 (968)
T ss_pred             ---ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhc
Confidence               223444555555555555555444431000                   0123555556666666665566666666


Q ss_pred             CCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCC
Q 022302          177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNL  254 (299)
Q Consensus       177 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L  254 (299)
                      +++|++|++++|.+.+.+|. .+.++++|++|++++|  .+.+.+| ..+..+++|++|++++|++++..  .+..+++|
T Consensus       163 l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n--~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  238 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASN--QLVGQIP-RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL  238 (968)
T ss_pred             CCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCC--CCcCcCC-hHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence            67777777777766665554 5666777777777776  6666666 56667777777777777766533  26677777


Q ss_pred             CEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          255 EALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       255 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      ++|++++|.+++.+|..++++++|++|++++|++.|.+|..+
T Consensus       239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  280 (968)
T PLN00113        239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI  280 (968)
T ss_pred             CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH
Confidence            777777777777777777777777777777777777776543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=4e-21  Score=193.85  Aligned_cols=166  Identities=30%  Similarity=0.331  Sum_probs=94.2

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      ..++++++|++|++++|.+.+..|.    .+.++++|++|++++|.+.+.+|..++++++|++|++++|++.+.+|. .+
T Consensus       158 ~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l  232 (968)
T PLN00113        158 NDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EI  232 (968)
T ss_pred             hHHhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hH
Confidence            3456666667777766666666665    566666666666666666666666666666666666666666655554 45


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCC
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTN  277 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  277 (299)
                      ..+++|++|++++|  ...+.+| ..+..+++|++|++++|++++..  .+..+++|++|++++|.+.+.+|+.+.++++
T Consensus       233 ~~l~~L~~L~L~~n--~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  309 (968)
T PLN00113        233 GGLTSLNHLDLVYN--NLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN  309 (968)
T ss_pred             hcCCCCCEEECcCc--eeccccC-hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence            66666666666666  5555555 45555555555555555554322  2444444555555555544444444444444


Q ss_pred             CCEEecCCCCCCCccC
Q 022302          278 LQVLDLSDNQNLTTLG  293 (299)
Q Consensus       278 L~~L~l~~N~l~g~ip  293 (299)
                      |++|++++|.+.+.+|
T Consensus       310 L~~L~l~~n~~~~~~~  325 (968)
T PLN00113        310 LEILHLFSNNFTGKIP  325 (968)
T ss_pred             CcEEECCCCccCCcCC
Confidence            4444444444444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=1.9e-20  Score=145.29  Aligned_cols=164  Identities=27%  Similarity=0.363  Sum_probs=138.4

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      +.+-.+.+++.|.+++|+++...|     .+..+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. .+|. .|
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vpp-----nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gf   98 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPP-----NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GF   98 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCC-----cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-cc
Confidence            345567788889999999998877     6888999999999999997 57888999999999999999987 4665 89


Q ss_pred             cCCCCCCEEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCCCC
Q 022302          200 ANLRYLQVLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTN  277 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  277 (299)
                      +.++.|+.||+.+|  .+.. .+| ..|..+..|+.|.+++|.+.-.+ .++++++|+.|.+.+|.+- .+|..++.++.
T Consensus        99 gs~p~levldltyn--nl~e~~lp-gnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~  174 (264)
T KOG0617|consen   99 GSFPALEVLDLTYN--NLNENSLP-GNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR  174 (264)
T ss_pred             CCCchhhhhhcccc--ccccccCC-cchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence            99999999999998  5443 455 77788889999999999988765 4899999999999999888 78999999999


Q ss_pred             CCEEecCCCCCCCccCCCc
Q 022302          278 LQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       278 L~~L~l~~N~l~g~ip~~~  296 (299)
                      |++|.+++|+++ .+|+++
T Consensus       175 lrelhiqgnrl~-vlppel  192 (264)
T KOG0617|consen  175 LRELHIQGNRLT-VLPPEL  192 (264)
T ss_pred             HHHHhcccceee-ecChhh
Confidence            999999999997 566654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.73  E-value=3.2e-19  Score=161.09  Aligned_cols=173  Identities=25%  Similarity=0.274  Sum_probs=149.1

Q ss_pred             cccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcch
Q 022302          116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRT  195 (299)
Q Consensus       116 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  195 (299)
                      .+....|..+.++++|+|..|++...-..    .+-+++.|+.|++|+|.+.-.-+..+..+++|++|+|++|+++ .++
T Consensus       259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g----~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~  333 (873)
T KOG4194|consen  259 KLDDGAFYGLEKMEHLNLETNRLQAVNEG----WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLD  333 (873)
T ss_pred             cccCcceeeecccceeecccchhhhhhcc----cccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCC
Confidence            34556778888999999999998877665    7788999999999999998888888999999999999999998 477


Q ss_pred             hhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-----cccCCCCCCEEeCCCCccCccCcc
Q 022302          196 KQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-----GLAKLKNLEALDLSYNYYIHSSLE  270 (299)
Q Consensus       196 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~L~~N~l~~~~p~  270 (299)
                      +..|..+..|++|+|++|  ...- +....|..+++|+.|||.+|.++..+     ++..+++|+.|+|.+|++......
T Consensus       334 ~~sf~~L~~Le~LnLs~N--si~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr  410 (873)
T KOG4194|consen  334 EGSFRVLSQLEELNLSHN--SIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR  410 (873)
T ss_pred             hhHHHHHHHhhhhccccc--chHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence            778999999999999999  5443 33367889999999999999988754     378899999999999999976678


Q ss_pred             cccCCCCCCEEecCCCCCCCccCCCc
Q 022302          271 GLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       271 ~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      +|..+..|++|||.+|.|...-|++|
T Consensus       411 Afsgl~~LE~LdL~~NaiaSIq~nAF  436 (873)
T KOG4194|consen  411 AFSGLEALEHLDLGDNAIASIQPNAF  436 (873)
T ss_pred             hhccCcccceecCCCCcceeeccccc
Confidence            99999999999999999987667766

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.69  E-value=2.1e-17  Score=149.45  Aligned_cols=166  Identities=27%  Similarity=0.271  Sum_probs=116.0

Q ss_pred             cccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhh
Q 022302          118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ  197 (299)
Q Consensus       118 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  197 (299)
                      +...|..-.++++|+|++|.++.....    .|..+.+|..|.|+.|+++...+..|.++++|+.|+|.+|++.- +...
T Consensus       165 ~~~sfp~~~ni~~L~La~N~It~l~~~----~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri-ve~l  239 (873)
T KOG4194|consen  165 PKPSFPAKVNIKKLNLASNRITTLETG----HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI-VEGL  239 (873)
T ss_pred             cCCCCCCCCCceEEeeccccccccccc----cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee-ehhh
Confidence            334444455666677776666666554    56666667777777777765555566667777777777776652 2223


Q ss_pred             hhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCC
Q 022302          198 GLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANL  275 (299)
Q Consensus       198 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  275 (299)
                      .|..+++|+.|.+..|  ...... ...|..+.++++|+|..|+++...  ++.+++.|++|+|++|.|....++.+..+
T Consensus       240 tFqgL~Sl~nlklqrN--~I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRN--DISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhcCchhhhhhhhhhc--Cccccc-Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            5666666666666666  333222 256777888888888888887664  47788899999999999988888889999


Q ss_pred             CCCCEEecCCCCCCCc
Q 022302          276 TNLQVLDLSDNQNLTT  291 (299)
Q Consensus       276 ~~L~~L~l~~N~l~g~  291 (299)
                      ++|+.|+|++|+++.-
T Consensus       317 qkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRL  332 (873)
T ss_pred             ccceeEeccccccccC
Confidence            9999999999998753

>PLN03150 hypothetical protein; Provisional

Probab=99.66  E-value=1.3e-15  Score=146.08  Aligned_cols=151  Identities=29%  Similarity=0.383  Sum_probs=105.9

Q ss_pred             cccchHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCC---CCCCceEecCC--C--CcEEEeeeCc-ccc
Q 022302           33 YKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCC---DDWEGVKCNAT--T--RRVMQLSLNE-TIK  104 (299)
Q Consensus        33 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c---~~w~gv~C~~~--~--~~v~~l~l~~-~l~  104 (299)
                      ...+.+.|..||+++|+++..+.        ..+|.+      .+||   ..|.||.|...  .  .+|+.|+|++ .+.
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~--------~~~W~g------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~  431 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPL--------RFGWNG------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR  431 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCcc--------cCCCCC------CCCCCcccccccceeeccCCCCceEEEEEECCCCCcc
Confidence            34567789999999999985541        247976      2231   26999999531  1  2477777777 555


Q ss_pred             ccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEe
Q 022302          105 FNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI  184 (299)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  184 (299)
                      |.           .+..+.++++|+.|+|++|.+.|.+|.    .+..+++|+.|+|++|+++|.+|..++++++|++|+
T Consensus       432 g~-----------ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        432 GF-----------IPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             cc-----------CCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            52           233566777778888888877777776    677777888888888887777777777777888888


Q ss_pred             CCCCcCCCcchhhhhcC-CCCCCEEECCCC
Q 022302          185 LSDNSIEGSRTKQGLAN-LRYLQVLDLSGN  213 (299)
Q Consensus       185 L~~n~l~~~~p~~~~~~-l~~L~~L~Ls~n  213 (299)
                      |++|+++|.+|. .+.. ..++..+++.+|
T Consensus       497 Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        497 LNGNSLSGRVPA-ALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CcCCcccccCCh-HHhhccccCceEEecCC
Confidence            888877777776 4443 345667777777

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=7e-18  Score=131.09  Aligned_cols=181  Identities=23%  Similarity=0.308  Sum_probs=147.1

Q ss_pred             CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc
Q 022302           91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS  169 (299)
Q Consensus        91 ~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  169 (299)
                      ..+++.+.++. +++.            .+..+..+.+|+.|++.+|++....+     +++.+++|++|+++-|++. .
T Consensus        32 ~s~ITrLtLSHNKl~~------------vppnia~l~nlevln~~nnqie~lp~-----~issl~klr~lnvgmnrl~-~   93 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTV------------VPPNIAELKNLEVLNLSNNQIEELPT-----SISSLPKLRILNVGMNRLN-I   93 (264)
T ss_pred             hhhhhhhhcccCceee------------cCCcHHHhhhhhhhhcccchhhhcCh-----hhhhchhhhheecchhhhh-c
Confidence            35788888888 5543            24467889999999999999998765     7999999999999999997 6


Q ss_pred             chHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cc
Q 022302          170 ILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GL  248 (299)
Q Consensus       170 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l  248 (299)
                      .|..|+.++.|++|||..|++.....+..|..+..|+.|+++.|  .+. .+| ..++.+++|+.|.+.+|.+-..+ .+
T Consensus        94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn--dfe-~lp-~dvg~lt~lqil~lrdndll~lpkei  169 (264)
T KOG0617|consen   94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN--DFE-ILP-PDVGKLTNLQILSLRDNDLLSLPKEI  169 (264)
T ss_pred             CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC--Ccc-cCC-hhhhhhcceeEEeeccCchhhCcHHH
Confidence            89999999999999999999875443347888999999999999  654 456 68899999999999999977765 59


Q ss_pred             cCCCCCCEEeCCCCccCccCcccccCCC---CCCEEecCCCCCCCccCC
Q 022302          249 AKLKNLEALDLSYNYYIHSSLEGLANLT---NLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~---~L~~L~l~~N~l~g~ip~  294 (299)
                      +.++.|++|++.+|.++ .+|+.++++.   +=+...+..|+....|.+
T Consensus       170 g~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  170 GDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             HHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            99999999999999999 7777777643   223455666766555543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.57  E-value=4.8e-16  Score=134.88  Aligned_cols=179  Identities=29%  Similarity=0.281  Sum_probs=118.3

Q ss_pred             cccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCC-CCCCccchHhhccCCCCcEEeCCCCcCCC
Q 022302          114 ALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGD-NFFNDSILPYLNTLTSLTTLILSDNSIEG  192 (299)
Q Consensus       114 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  192 (299)
                      +..+++..|+.+++|++|||++|.|+.+-|+    +|.+++.|..|-+.+ |+++......|+.+..|+-|.+.-|++.-
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C  154 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC  154 (498)
T ss_pred             cccCChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc
Confidence            3347788999999999999999999999888    888888876665544 77775444455555444444444444431


Q ss_pred             -----------------------cchhhhhcCCCCCCEEECCCCcC------------------CCC-------------
Q 022302          193 -----------------------SRTKQGLANLRYLQVLDLSGNFN------------------ITS-------------  218 (299)
Q Consensus       193 -----------------------~~p~~~~~~l~~L~~L~Ls~n~~------------------~~~-------------  218 (299)
                                             .++...|..+..++.+.+..|..                  .+.             
T Consensus       155 ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~  234 (498)
T KOG4237|consen  155 IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYK  234 (498)
T ss_pred             hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHH
Confidence                                   23322444445555555544410                  000             


Q ss_pred             ----------------------------CccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccC
Q 022302          219 ----------------------------GSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSS  268 (299)
Q Consensus       219 ----------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~  268 (299)
                                                  +.-|...|..+++|+.|++++|+++.+.  +|.....+++|.|..|++...-
T Consensus       235 Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~  314 (498)
T KOG4237|consen  235 RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS  314 (498)
T ss_pred             HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH
Confidence                                        0011145777889999999999998875  3777777888888888777655


Q ss_pred             cccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          269 LEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       269 p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      ...|.++..|++|+|.+|+|+-..|-.|
T Consensus       315 ~~~f~~ls~L~tL~L~~N~it~~~~~aF  342 (498)
T KOG4237|consen  315 SGMFQGLSGLKTLSLYDNQITTVAPGAF  342 (498)
T ss_pred             HHhhhccccceeeeecCCeeEEEecccc
Confidence            6667777778888888888776656554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=1.8e-16  Score=144.73  Aligned_cols=168  Identities=29%  Similarity=0.329  Sum_probs=110.6

Q ss_pred             cccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCC-Ccchh
Q 022302          118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIE-GSRTK  196 (299)
Q Consensus       118 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~  196 (299)
                      +-+.|-+++.|-.|||++|++...+|     .+..+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|.
T Consensus       142 Pn~lfinLtDLLfLDLS~NrLe~LPP-----Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt  216 (1255)
T KOG0444|consen  142 PNSLFINLTDLLFLDLSNNRLEMLPP-----QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT  216 (1255)
T ss_pred             CchHHHhhHhHhhhccccchhhhcCH-----HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence            34445556666666666666655544     4556666666666666554322333334445555555554433 23454


Q ss_pred             hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCC
Q 022302          197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANL  275 (299)
Q Consensus       197 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  275 (299)
                       .+..+.+|+.+|++.|  .+. .+| ..+..+++|+.|+|++|.++... ..+...+|++|+|+.|+++ .+|+++..+
T Consensus       217 -sld~l~NL~dvDlS~N--~Lp-~vP-ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL  290 (1255)
T KOG0444|consen  217 -SLDDLHNLRDVDLSEN--NLP-IVP-ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL  290 (1255)
T ss_pred             -chhhhhhhhhcccccc--CCC-cch-HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence             6777788888888888  443 345 67778888888888888888764 3556678888888888888 788888888


Q ss_pred             CCCCEEecCCCCCC-CccCCCc
Q 022302          276 TNLQVLDLSDNQNL-TTLGKPL  296 (299)
Q Consensus       276 ~~L~~L~l~~N~l~-g~ip~~~  296 (299)
                      ++|+.|.+.+|+++ .-||+.+
T Consensus       291 ~kL~kLy~n~NkL~FeGiPSGI  312 (1255)
T KOG0444|consen  291 TKLTKLYANNNKLTFEGIPSGI  312 (1255)
T ss_pred             HHHHHHHhccCcccccCCccch
Confidence            88888888888764 2366543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=3.8e-16  Score=142.62  Aligned_cols=162  Identities=29%  Similarity=0.343  Sum_probs=83.4

Q ss_pred             CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCC
Q 022302          125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY  204 (299)
Q Consensus       125 l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  204 (299)
                      -+++-.|+|++|++..++..    -+-+++.|-.||||+|++. .+|+.+..+..|++|+|++|.+.-.-. .-+..+++
T Consensus       125 AKn~iVLNLS~N~IetIPn~----lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmts  198 (1255)
T KOG0444|consen  125 AKNSIVLNLSYNNIETIPNS----LFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTS  198 (1255)
T ss_pred             hcCcEEEEcccCccccCCch----HHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchh
Confidence            33444444444444443332    3334444444444444443 234444444444444444444331111 12233344


Q ss_pred             CCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302          205 LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL  283 (299)
Q Consensus       205 L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  283 (299)
                      |++|.+++.. .....+| ..+..+.+|..+|++.|++.-.|. +..+++|+.|+|++|+|+ .+.-..+.+.+|++|++
T Consensus       199 L~vLhms~Tq-RTl~N~P-tsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNl  275 (1255)
T KOG0444|consen  199 LSVLHMSNTQ-RTLDNIP-TSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNL  275 (1255)
T ss_pred             hhhhhccccc-chhhcCC-CchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhcc
Confidence            4444444431 1112344 456666677777777777666553 666677777777777777 44445566667777777


Q ss_pred             CCCCCCCccCCCc
Q 022302          284 SDNQNLTTLGKPL  296 (299)
Q Consensus       284 ~~N~l~g~ip~~~  296 (299)
                      +.|+++ .+|+.+
T Consensus       276 SrNQLt-~LP~av  287 (1255)
T KOG0444|consen  276 SRNQLT-VLPDAV  287 (1255)
T ss_pred             ccchhc-cchHHH
Confidence            777775 466543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.49  E-value=2.8e-14  Score=126.30  Aligned_cols=187  Identities=27%  Similarity=0.286  Sum_probs=133.3

Q ss_pred             CCcEEEeeeCc-cccccccCCCCccccccccccCCC---CCccEEeCCCCCCCCcchhhhHHhhcCC-CCCCEEECCCCC
Q 022302           91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPF---EELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNF  165 (299)
Q Consensus        91 ~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~  165 (299)
                      ..+++.+++++ .+.+.           ....+..+   ++|++|++++|.+.+.....+...+..+ ++|+.|++++|.
T Consensus        80 ~~~L~~L~l~~~~~~~~-----------~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116          80 GCGLQELDLSDNALGPD-----------GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             cCceeEEEccCCCCChh-----------HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence            35788899887 44321           01122222   5599999999998864443444466777 899999999999


Q ss_pred             CCcc----chHhhccCCCCcEEeCCCCcCCCcchh---hhhcCCCCCCEEECCCCcCCCCCc----cchhhhccCCCCcE
Q 022302          166 FNDS----ILPYLNTLTSLTTLILSDNSIEGSRTK---QGLANLRYLQVLDLSGNFNITSGS----LTRLGLANLTNLKK  234 (299)
Q Consensus       166 l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~---~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~~~~l~~L~~  234 (299)
                      +++.    ++..+..+++|++|++++|.+++....   ..+..+++|++|++++|  .+.+.    +. ..+..+++|++
T Consensus       149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~-~~~~~~~~L~~  225 (319)
T cd00116         149 LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN--GLTDEGASALA-ETLASLKSLEV  225 (319)
T ss_pred             CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC--ccChHHHHHHH-HHhcccCCCCE
Confidence            9843    344566778999999999998853221   13556679999999999  55432    22 45667889999


Q ss_pred             EECCCCCCCCcc--cc-----cCCCCCCEEeCCCCccCc----cCcccccCCCCCCEEecCCCCCCCc
Q 022302          235 LDLGSCGITTIQ--GL-----AKLKNLEALDLSYNYYIH----SSLEGLANLTNLQVLDLSDNQNLTT  291 (299)
Q Consensus       235 L~Ls~n~l~~~~--~l-----~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~g~  291 (299)
                      |++++|.+++..  .+     ...+.|++|++++|.++.    .+.+.+..+++|+++++++|++...
T Consensus       226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            999999988632  11     134789999999999873    3455667778999999999999743

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.46  E-value=1.1e-12  Score=134.33  Aligned_cols=163  Identities=25%  Similarity=0.200  Sum_probs=110.9

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  200 (299)
                      .+..+++|+.|+++++.....+|     .+..+++|++|++++|.....+|..+.++++|++|++++|...+.+|. .+ 
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-  701 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-  701 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-
Confidence            34567788888888776555555     467778888888888765566777788888888888887765445664 22 


Q ss_pred             CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccc-------------------------------c
Q 022302          201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL-------------------------------A  249 (299)
Q Consensus       201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l-------------------------------~  249 (299)
                      ++++|+.|++++|  ...+.+| .   ...+|+.|++++|.++..+..                               .
T Consensus       702 ~l~sL~~L~Lsgc--~~L~~~p-~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~  775 (1153)
T PLN03210        702 NLKSLYRLNLSGC--SRLKSFP-D---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM  775 (1153)
T ss_pred             CCCCCCEEeCCCC--CCccccc-c---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhh
Confidence            6777888888777  4444444 1   134566666666665544310                               1


Q ss_pred             CCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          250 KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       250 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      ..++|+.|++++|...+.+|..++++++|+.|++++|...+.+|...
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~  822 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI  822 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence            12467777888877777788888888888888888877666777654

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.44  E-value=1.6e-13  Score=121.42  Aligned_cols=166  Identities=31%  Similarity=0.309  Sum_probs=122.2

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCc----cchHhhccC-CCCcEEeCCCCcCCCcc
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND----SILPYLNTL-TSLTTLILSDNSIEGSR  194 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~~  194 (299)
                      ..+.++++|++|++++|.+.+..+..+...... ++|++|++++|++++    .+...+..+ ++|++|++++|.+++..
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  153 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS  153 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence            456678899999999999987655522222233 559999999999874    233455667 89999999999998532


Q ss_pred             hh---hhhcCCCCCCEEECCCCcCCCCCc----cchhhhccCCCCcEEECCCCCCCCcc------cccCCCCCCEEeCCC
Q 022302          195 TK---QGLANLRYLQVLDLSGNFNITSGS----LTRLGLANLTNLKKLDLGSCGITTIQ------GLAKLKNLEALDLSY  261 (299)
Q Consensus       195 p~---~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~  261 (299)
                      ..   ..+..+++|++|++++|  .+.+.    ++ ..+..+++|++|++++|.+++..      .+..+++|++|++++
T Consensus       154 ~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~  230 (319)
T cd00116         154 CEALAKALRANRDLKELNLANN--GIGDAGIRALA-EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD  230 (319)
T ss_pred             HHHHHHHHHhCCCcCEEECcCC--CCchHHHHHHH-HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence            21   24667789999999999  65532    22 34556679999999999987543      266788999999999


Q ss_pred             CccCccCccccc-----CCCCCCEEecCCCCCC
Q 022302          262 NYYIHSSLEGLA-----NLTNLQVLDLSDNQNL  289 (299)
Q Consensus       262 N~l~~~~p~~l~-----~l~~L~~L~l~~N~l~  289 (299)
                      |.+++.....+.     ..+.|++|++++|.++
T Consensus       231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         231 NNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             CcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            999864333332     2478999999999986

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.44  E-value=2.6e-13  Score=130.98  Aligned_cols=83  Identities=24%  Similarity=0.215  Sum_probs=61.1

Q ss_pred             CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302          204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL  283 (299)
Q Consensus       204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  283 (299)
                      +|+.|++++|  .+.+ +| .   ..++|+.|++++|+++.++.+  ..+|+.|++++|+++ .+|+.+.++++|+.|++
T Consensus       383 ~L~~LdLs~N--~Lt~-LP-~---l~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGN--RLTS-LP-V---LPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             ccceEEecCC--cccC-CC-C---cccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            5666666666  4432 33 1   124677777777777766532  356888899999988 78999999999999999


Q ss_pred             CCCCCCCccCCCc
Q 022302          284 SDNQNLTTLGKPL  296 (299)
Q Consensus       284 ~~N~l~g~ip~~~  296 (299)
                      ++|+++|.+|..+
T Consensus       453 s~N~Ls~~~~~~L  465 (788)
T PRK15387        453 EGNPLSERTLQAL  465 (788)
T ss_pred             CCCCCCchHHHHH
Confidence            9999999877643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.44  E-value=1.6e-15  Score=131.97  Aligned_cols=157  Identities=31%  Similarity=0.364  Sum_probs=131.3

Q ss_pred             ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (299)
Q Consensus       119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  198 (299)
                      +..+..+.++..+++.+|.+....|.    .+. ++.|++||...|-+. .+|+.++.+.+|+-|++.+|++. .+|  +
T Consensus       153 p~~~~~~~~l~~l~~~~n~l~~l~~~----~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--e  223 (565)
T KOG0472|consen  153 PEDMVNLSKLSKLDLEGNKLKALPEN----HIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP--E  223 (565)
T ss_pred             chHHHHHHHHHHhhccccchhhCCHH----HHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC--C
Confidence            34566677888888888888888775    333 888999999998875 68888999999999999999998 466  5


Q ss_pred             hcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCC
Q 022302          199 LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTN  277 (299)
Q Consensus       199 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  277 (299)
                      |.++..|++++++.|  . ...+|.+-..+++++.+||+.+|+++..|. +..+++|+.||+++|.++ ..|.+++++ +
T Consensus       224 f~gcs~L~Elh~g~N--~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-h  298 (565)
T KOG0472|consen  224 FPGCSLLKELHVGEN--Q-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-H  298 (565)
T ss_pred             CCccHHHHHHHhccc--H-HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-e
Confidence            899999999999998  3 335675566689999999999999998874 788899999999999999 678889999 8


Q ss_pred             CCEEecCCCCCC
Q 022302          278 LQVLDLSDNQNL  289 (299)
Q Consensus       278 L~~L~l~~N~l~  289 (299)
                      |+.|-+.||++.
T Consensus       299 L~~L~leGNPlr  310 (565)
T KOG0472|consen  299 LKFLALEGNPLR  310 (565)
T ss_pred             eeehhhcCCchH
Confidence            999999999874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.41  E-value=1e-11  Score=120.55  Aligned_cols=42  Identities=21%  Similarity=0.250  Sum_probs=28.9

Q ss_pred             hcccccchHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022302           30 IHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCC   79 (299)
Q Consensus        30 ~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c   79 (299)
                      ++...+..+.|...+.++.+.+..|.   |-+..-.+|++     ..++|
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~l~~p~---~~~~~~~~~~~-----~~~fc   95 (754)
T PRK15370         54 CHPPETASPEEIKSKFECLRMLAFPA---YADNIQYSRGG-----ADQYC   95 (754)
T ss_pred             hCCCCCCCHHHHHHHHHHHHHhcCCc---hhhccccccCC-----CCccc
Confidence            34456677889999999999998773   21122334988     57888

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.37  E-value=4.6e-15  Score=129.18  Aligned_cols=162  Identities=27%  Similarity=0.316  Sum_probs=97.0

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  200 (299)
                      .++.+..++.++.++|.+....+     .++.+..|+.++..+|+++ ..|+.+..+.+|..+++.+|++. .+|+..+.
T Consensus       109 ~i~s~~~l~~l~~s~n~~~el~~-----~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~  181 (565)
T KOG0472|consen  109 QIGSLISLVKLDCSSNELKELPD-----SIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA  181 (565)
T ss_pred             HHhhhhhhhhhhccccceeecCc-----hHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH
Confidence            34445555555555555555444     4555555555555555554 34455555555555555555554 23332233


Q ss_pred             CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc------------------------ccCCCCCCE
Q 022302          201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG------------------------LAKLKNLEA  256 (299)
Q Consensus       201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------------l~~l~~L~~  256 (299)
                       ++.|+++|...|   ..+.+| ..++.+.+|..|++..|++...|+                        ..+++++..
T Consensus       182 -m~~L~~ld~~~N---~L~tlP-~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  182 -MKRLKHLDCNSN---LLETLP-PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV  256 (565)
T ss_pred             -HHHHHhcccchh---hhhcCC-hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence             556666666665   223455 455666666666666666554442                        346677788


Q ss_pred             EeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       257 L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      |||.+|+++ ..|+.+.-+.+|++||+++|.+++ +|.++
T Consensus       257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sL  294 (565)
T KOG0472|consen  257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSL  294 (565)
T ss_pred             eeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCccc
Confidence            888888888 788888888888888888888875 55443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.35  E-value=1.4e-13  Score=130.83  Aligned_cols=163  Identities=32%  Similarity=0.393  Sum_probs=118.8

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhH------Hhh---------------cCCCCCCEEECCCCCCCccchHhhccCC
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAY------DSF---------------GSLKQLKMLNLGDNFFNDSILPYLNTLT  178 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~~l---------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  178 (299)
                      ....+++.|++|+|..|++....+..+.      ..+               ..++.|+.|.+.+|.+++..-+.+.++.
T Consensus       304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~  383 (1081)
T KOG0618|consen  304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK  383 (1081)
T ss_pred             CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence            3456678888888888888776442100      000               1123466677888888877777778888


Q ss_pred             CCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEe
Q 022302          179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALD  258 (299)
Q Consensus       179 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~  258 (299)
                      +|++|+|++|++. .+|...+.++..|++|+||+|  .+. .+| ..+..++.|++|...+|.+...|.+..++.|+.+|
T Consensus       384 hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGN--kL~-~Lp-~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD  458 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGN--KLT-TLP-DTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD  458 (1081)
T ss_pred             ceeeeeecccccc-cCCHHHHhchHHhHHHhcccc--hhh-hhh-HHHHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence            8888888888887 477777888888888888888  544 345 66777888888888888888888888889999999


Q ss_pred             CCCCccCccCcccccCCCCCCEEecCCCC
Q 022302          259 LSYNYYIHSSLEGLANLTNLQVLDLSDNQ  287 (299)
Q Consensus       259 L~~N~l~~~~p~~l~~l~~L~~L~l~~N~  287 (299)
                      ++.|.++....+.....++|++||++||.
T Consensus       459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cccchhhhhhhhhhCCCcccceeeccCCc
Confidence            99888875433333334889999999886

>PLN03210 Resistant to P

Probab=99.35  E-value=1.3e-11  Score=126.47  Aligned_cols=163  Identities=23%  Similarity=0.177  Sum_probs=89.0

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCC-------------
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN-------------  188 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-------------  188 (299)
                      ++.+++|++|++++|.....+|.    .+..+++|+.|++++|..-..+|..+ ++++|++|++++|             
T Consensus       653 ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL  727 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNI  727 (1153)
T ss_pred             cccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCc
Confidence            55566777777777655555554    56666666666666654333344333 3444444444443             


Q ss_pred             --------cCCCcchhh-----------------------------hhcCCCCCCEEECCCCcCCCCCccchhhhccCCC
Q 022302          189 --------SIEGSRTKQ-----------------------------GLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN  231 (299)
Q Consensus       189 --------~l~~~~p~~-----------------------------~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~  231 (299)
                              .+. .+|..                             .....++|+.|++++|  ...+.+| ..++++++
T Consensus       728 ~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n--~~l~~lP-~si~~L~~  803 (1153)
T PLN03210        728 SWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI--PSLVELP-SSIQNLHK  803 (1153)
T ss_pred             CeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC--CCccccC-hhhhCCCC
Confidence                    322 12210                             0001234555566655  4445555 55666677


Q ss_pred             CcEEECCCCC-CCCcccccCC---------------------CCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCC
Q 022302          232 LKKLDLGSCG-ITTIQGLAKL---------------------KNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       232 L~~L~Ls~n~-l~~~~~l~~l---------------------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  289 (299)
                      |+.|++++|. +...+....+                     ++|+.|+|++|.++ .+|..+..+++|+.|++++|+-.
T Consensus       804 L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        804 LEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             CCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence            7777776653 3332211112                     35666666667666 56777778888888888875543


Q ss_pred             CccCC
Q 022302          290 TTLGK  294 (299)
Q Consensus       290 g~ip~  294 (299)
                      ..+|.
T Consensus       883 ~~l~~  887 (1153)
T PLN03210        883 QRVSL  887 (1153)
T ss_pred             CccCc
Confidence            44554

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.34  E-value=1.8e-13  Score=119.05  Aligned_cols=109  Identities=28%  Similarity=0.273  Sum_probs=86.6

Q ss_pred             CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCC-CcCCCcchhhhhcCCCCC
Q 022302          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD-NSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~~L  205 (299)
                      .-.+++|..|+|+.+.+.    +|..+++|+.|||++|.++.+-|..|..+.+|..|.+.+ |+|+ .+|...|.++..+
T Consensus        68 ~tveirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCcccCChh----hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence            456799999999999887    999999999999999999999999999999988887766 8888 5888788888888


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCC
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT  243 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  243 (299)
                      +.|.+.-|  +..-... ..+..++++..|.+.+|.+.
T Consensus       143 qrLllNan--~i~Cir~-~al~dL~~l~lLslyDn~~q  177 (498)
T KOG4237|consen  143 QRLLLNAN--HINCIRQ-DALRDLPSLSLLSLYDNKIQ  177 (498)
T ss_pred             HHHhcChh--hhcchhH-HHHHHhhhcchhcccchhhh
Confidence            88877777  4443322 55666666666666555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.30  E-value=2.5e-11  Score=117.84  Aligned_cols=146  Identities=24%  Similarity=0.270  Sum_probs=73.2

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.++.. |.    .+  .++|+.|++++|.+. .+|..+.  .+|++|++++|+++ .+|. .+.  ++|
T Consensus       220 ~nL~~L~Ls~N~LtsL-P~----~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~-~l~--~sL  285 (754)
T PRK15370        220 GNIKTLYANSNQLTSI-PA----TL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPE-NLP--EEL  285 (754)
T ss_pred             cCCCEEECCCCccccC-Ch----hh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccc-ccC--CCC
Confidence            3566666666666643 22    12  124555555555554 3344332  35566666666555 2443 221  355


Q ss_pred             CEEECCCCcCCCCCccchhhh-------------------ccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCc
Q 022302          206 QVLDLSGNFNITSGSLTRLGL-------------------ANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH  266 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~-------------------~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~  266 (299)
                      +.|++++|  .+.+ +| ..+                   ...++|+.|++++|.++..+. .-.++|+.|++++|+++ 
T Consensus       286 ~~L~Ls~N--~Lt~-LP-~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~L~-  359 (754)
T PRK15370        286 RYLSVYDN--SIRT-LP-AHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA-SLPPELQVLDVSKNQIT-  359 (754)
T ss_pred             cEEECCCC--cccc-Cc-ccchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh-hhcCcccEEECCCCCCC-
Confidence            55555555  3322 11 000                   012345555666665555432 11246667777777666 


Q ss_pred             cCcccccCCCCCCEEecCCCCCCCccCC
Q 022302          267 SSLEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       267 ~~p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      .+|..+.  ++|++|++++|+++ .+|+
T Consensus       360 ~LP~~lp--~~L~~LdLs~N~Lt-~LP~  384 (754)
T PRK15370        360 VLPETLP--PTITTLDVSRNALT-NLPE  384 (754)
T ss_pred             cCChhhc--CCcCEEECCCCcCC-CCCH
Confidence            4555442  46667777777665 3554

>PLN03150 hypothetical protein; Provisional

Probab=99.29  E-value=1.5e-11  Score=118.27  Aligned_cols=107  Identities=31%  Similarity=0.445  Sum_probs=95.9

Q ss_pred             CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (299)
Q Consensus       127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  206 (299)
                      .++.|+|++|.+.+.+|.    .+..+++|+.|+|++|.+.|.+|..++.+++|++|+|++|++++.+|. .++.+++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence            478899999999999998    899999999999999999999999999999999999999999998886 799999999


Q ss_pred             EEECCCCcCCCCCccchhhhcc-CCCCcEEECCCCC
Q 022302          207 VLDLSGNFNITSGSLTRLGLAN-LTNLKKLDLGSCG  241 (299)
Q Consensus       207 ~L~Ls~n~~~~~~~~~~~~~~~-l~~L~~L~Ls~n~  241 (299)
                      +|++++|  .+.|.+| ..+.. ..++..+++.+|.
T Consensus       494 ~L~Ls~N--~l~g~iP-~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        494 ILNLNGN--SLSGRVP-AALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EEECcCC--cccccCC-hHHhhccccCceEEecCCc
Confidence            9999999  8999999 55554 3567788888876

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.27  E-value=3.8e-11  Score=116.20  Aligned_cols=38  Identities=24%  Similarity=0.079  Sum_probs=23.4

Q ss_pred             CCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302          252 KNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       252 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      ++|+.|++++|.+++ +|..   .++|+.|++++|++.+ +|.
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~  419 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPM  419 (788)
T ss_pred             cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCc
Confidence            356677777777663 4432   2456777777777764 554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.26  E-value=6.5e-12  Score=100.64  Aligned_cols=127  Identities=31%  Similarity=0.348  Sum_probs=42.5

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhc-CCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFG-SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  200 (299)
                      +.+..++++|+|.+|.++.+.      .++ .+.+|+.|++++|.++..  +.+..+++|++|++++|+++. +......
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~   85 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDK   85 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHH
T ss_pred             ccccccccccccccccccccc------chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHH
Confidence            334456777888888777652      333 467778888888877642  246667778888888887774 4331223


Q ss_pred             CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-----ccCCCCCCEEeC
Q 022302          201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-----LAKLKNLEALDL  259 (299)
Q Consensus       201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----l~~l~~L~~L~L  259 (299)
                      .+++|++|++++|.+...+.+  ..+..+++|++|++.+|.++....     +..+|+|+.||-
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             hCCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            577777788877744333333  345667777777777777665432     556667776663

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.24  E-value=3.6e-13  Score=127.97  Aligned_cols=164  Identities=29%  Similarity=0.324  Sum_probs=111.3

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhH-------------------HhhcCCCCCCEEECCCCCCCccchHhhc-----
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAY-------------------DSFGSLKQLKMLNLGDNFFNDSILPYLN-----  175 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----  175 (299)
                      +.+..+.+|+.++..+|.++.. |.++.                   ....+++.|++|+|..|++....+..+.     
T Consensus       258 ~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~  336 (1081)
T KOG0618|consen  258 EWIGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS  336 (1081)
T ss_pred             HHHHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence            5667777777777777777443 22100                   1334566777777777776532211111     


Q ss_pred             --------------------cCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEE
Q 022302          176 --------------------TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL  235 (299)
Q Consensus       176 --------------------~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L  235 (299)
                                          .++.|+.|++.+|.++...-+ .+.+..+|+.|+|++|  .+ +.+|...+.++..|+.|
T Consensus       337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyN--rL-~~fpas~~~kle~LeeL  412 (1081)
T KOG0618|consen  337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYN--RL-NSFPASKLRKLEELEEL  412 (1081)
T ss_pred             HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeeccc--cc-ccCCHHHHhchHHhHHH
Confidence                                123356666677777655444 5677788888888888  33 34566677778888888


Q ss_pred             ECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          236 DLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       236 ~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      +|++|+++..+. +..++.|++|....|++. ..| .+..++.|+.+|++.|+++.
T Consensus       413 ~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  413 NLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             hcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence            888888887763 777788888888888887 567 78889999999999999863

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=2.8e-11  Score=97.02  Aligned_cols=128  Identities=27%  Similarity=0.325  Sum_probs=55.2

Q ss_pred             cEEEeeeCc-cccccccCCCCccccccccccC-CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFH-PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      +...++|.+ .+..             ...++ .+.+|+.|++++|.++...      .+..+++|++|++++|.++...
T Consensus        20 ~~~~L~L~~n~I~~-------------Ie~L~~~l~~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen   20 KLRELNLRGNQIST-------------IENLGATLDKLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             -----------------------------S--TT-TT--EEE-TTS--S--T------T----TT--EEE--SS---S-C
T ss_pred             cccccccccccccc-------------ccchhhhhcCCCEEECCCCCCcccc------CccChhhhhhcccCCCCCCccc
Confidence            456777777 4432             12344 5789999999999999863      5778999999999999998643


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCC
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS  239 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~  239 (299)
                      +.....+++|++|++++|++...-.-..+..+++|+.|++.+|++..........+..+|+|+.||-..
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            333346899999999999997533324578899999999999944333333335677899999998543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=4.3e-11  Score=109.34  Aligned_cols=156  Identities=36%  Similarity=0.415  Sum_probs=112.5

Q ss_pred             CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (299)
Q Consensus       127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  206 (299)
                      +|+.|++++|.+.....     .+..+++|+.|++++|+++. +|...+..+.|+.|++++|++. .+|. .......|+
T Consensus       141 nL~~L~l~~N~i~~l~~-----~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~-~~~~~~~L~  212 (394)
T COG4886         141 NLKELDLSDNKIESLPS-----PLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPP-EIELLSALE  212 (394)
T ss_pred             hcccccccccchhhhhh-----hhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccc-cCch-hhhhhhhhh
Confidence            67777777777766532     46777778888888887764 4554556777788888888777 3554 334555577


Q ss_pred             EEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc-ccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCC
Q 022302          207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI-QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD  285 (299)
Q Consensus       207 ~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~  285 (299)
                      ++.+++|  .... .+ ..+..+.++..+.+.+|++... ..++.+++++.|++++|.++ .++. ++...+++.|++++
T Consensus       213 ~l~~~~N--~~~~-~~-~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         213 ELDLSNN--SIIE-LL-SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSG  286 (394)
T ss_pred             hhhhcCC--ccee-cc-hhhhhcccccccccCCceeeeccchhccccccceecccccccc-cccc-ccccCccCEEeccC
Confidence            8888877  3222 22 4567777888888888887763 35778888999999999999 4444 88999999999999


Q ss_pred             CCCCCccCCCc
Q 022302          286 NQNLTTLGKPL  296 (299)
Q Consensus       286 N~l~g~ip~~~  296 (299)
                      |.++...|...
T Consensus       287 n~~~~~~~~~~  297 (394)
T COG4886         287 NSLSNALPLIA  297 (394)
T ss_pred             ccccccchhhh
Confidence            99987666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.1e-11  Score=109.33  Aligned_cols=164  Identities=22%  Similarity=0.233  Sum_probs=118.6

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHh-hccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      ....|++++.|||+.|-+....+  +......+++|+.|+++.|++.-..... -..+++|+.|.|+.|.++..-.....
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~--v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~  218 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFP--VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWIL  218 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHH--HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHH
Confidence            55678899999999998877644  2335577899999999999875332221 12567889999999988843333356


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCcc-Cccc----
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHS-SLEG----  271 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~-~p~~----  271 (299)
                      ..+|+|+.|++.+|  ....... .....+..|+.|||++|++...+   ..+.++.|+.|+++.+.+... .|+.    
T Consensus       219 ~~fPsl~~L~L~~N--~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~  295 (505)
T KOG3207|consen  219 LTFPSLEVLYLEAN--EIILIKA-TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD  295 (505)
T ss_pred             HhCCcHHHhhhhcc--cccceec-chhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence            67899999999998  3222221 23455678999999999877665   377888999999999888752 3433    


Q ss_pred             -ccCCCCCCEEecCCCCCC
Q 022302          272 -LANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       272 -l~~l~~L~~L~l~~N~l~  289 (299)
                       ...+++|++|++..|++.
T Consensus       296 kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  296 KTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhcccccceeeecccCccc
Confidence             357889999999999883

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=2.2e-11  Score=104.70  Aligned_cols=169  Identities=21%  Similarity=0.177  Sum_probs=107.4

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHh-------------hccCCCCcEEeCCC
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-------------LNTLTSLTTLILSD  187 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-------------l~~l~~L~~L~L~~  187 (299)
                      .+..+++|++||||+|.|.-..+..+.+-+..+..|++|.|.+|.+...--..             .+.-+.|++++.++
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            45566788888888888877766666666777888888888888775321112             23346788888888


Q ss_pred             CcCCCcch---hhhhcCCCCCCEEECCCCcCCCCCc-cchhhhccCCCCcEEECCCCCCCCcc------cccCCCCCCEE
Q 022302          188 NSIEGSRT---KQGLANLRYLQVLDLSGNFNITSGS-LTRLGLANLTNLKKLDLGSCGITTIQ------GLAKLKNLEAL  257 (299)
Q Consensus       188 n~l~~~~p---~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L  257 (299)
                      |++...--   ...|...+.|+.+.+..|.+...|. .....+..+++|++|||.+|-++...      .+..+++|+.|
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            88763211   1245666777777777775554444 22256677778888888877776432      25566677777


Q ss_pred             eCCCCccCccCcccc-----cCCCCCCEEecCCCCCC
Q 022302          258 DLSYNYYIHSSLEGL-----ANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       258 ~L~~N~l~~~~p~~l-----~~l~~L~~L~l~~N~l~  289 (299)
                      ++++|.+.......+     ...++|+.|.+.+|.++
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            777776654332222     23456666666666553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=1.7e-11  Score=103.63  Aligned_cols=129  Identities=36%  Similarity=0.418  Sum_probs=56.4

Q ss_pred             CCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCc
Q 022302          154 KQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK  233 (299)
Q Consensus       154 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~  233 (299)
                      +.|+++|||+|.++ .+.++..-.|.++.|+++.|.+.. +.  .++.+++|.+|||++|  .++...  ..-..+.+++
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~--nLa~L~~L~~LDLS~N--~Ls~~~--Gwh~KLGNIK  355 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ--NLAELPQLQLLDLSGN--LLAECV--GWHLKLGNIK  355 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh--hhhhcccceEeecccc--hhHhhh--hhHhhhcCEe
Confidence            34444455555444 233444444455555555554442 11  2444445555555554  222111  1222334444


Q ss_pred             EEECCCCCCCCcccccCCCCCCEEeCCCCccCcc-CcccccCCCCCCEEecCCCCCCC
Q 022302          234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHS-SLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       234 ~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      .|.|+.|.+.....+.++-+|..||+++|+|... --..++++|-|+++.+.+|++.+
T Consensus       356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            5555555444444444444455555555544421 11234444445555555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=1.7e-11  Score=103.68  Aligned_cols=130  Identities=32%  Similarity=0.346  Sum_probs=107.3

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  202 (299)
                      ...+.|+++||++|.++.+..     +..-.|+++.|++|+|.+...  ..+..+++|+.|||++|.++. +.. +-.++
T Consensus       281 dTWq~LtelDLS~N~I~~iDE-----SvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~G-wh~KL  351 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDE-----SVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVG-WHLKL  351 (490)
T ss_pred             chHhhhhhccccccchhhhhh-----hhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhh-hHhhh
Confidence            344679999999999887654     677789999999999999743  348899999999999999873 443 56778


Q ss_pred             CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCc
Q 022302          203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIH  266 (299)
Q Consensus       203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~  266 (299)
                      -+++.|.|++|  .... +  ..+..+-+|.+||+.+|++....   .++++|-|+++.|.+|.+.+
T Consensus       352 GNIKtL~La~N--~iE~-L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  352 GNIKTLKLAQN--KIET-L--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             cCEeeeehhhh--hHhh-h--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            89999999999  4432 2  46777889999999999988764   59999999999999999985

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.05  E-value=4.2e-12  Score=115.27  Aligned_cols=153  Identities=30%  Similarity=0.339  Sum_probs=119.5

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  202 (299)
                      ..+..|+.+.+..|.+..+.+     .+..+..|.+|||+.|+++ .+|..+..|+ |+.|.+++|+++ .+|. .++.+
T Consensus        95 ~~f~~Le~liLy~n~~r~ip~-----~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~-~ig~~  165 (722)
T KOG0532|consen   95 CAFVSLESLILYHNCIRTIPE-----AICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPE-EIGLL  165 (722)
T ss_pred             HHHHHHHHHHHHhccceecch-----hhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCc-ccccc
Confidence            334456666666666655443     6778888889999999887 4666676665 888889999887 4776 67788


Q ss_pred             CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302          203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL  281 (299)
Q Consensus       203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  281 (299)
                      ..|..|+.+.|  ... .+| ..++.+.+|+.|.+..|++...++ +..+ .|..||++.|++. .+|-.|.+|++|++|
T Consensus       166 ~tl~~ld~s~n--ei~-slp-sql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l  239 (722)
T KOG0532|consen  166 PTLAHLDVSKN--EIQ-SLP-SQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVL  239 (722)
T ss_pred             hhHHHhhhhhh--hhh-hch-HHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheee
Confidence            88999999988  443 345 677888899999999998887764 5544 5899999999999 899999999999999


Q ss_pred             ecCCCCCCC
Q 022302          282 DLSDNQNLT  290 (299)
Q Consensus       282 ~l~~N~l~g  290 (299)
                      -|.+|++..
T Consensus       240 ~LenNPLqS  248 (722)
T KOG0532|consen  240 QLENNPLQS  248 (722)
T ss_pred             eeccCCCCC
Confidence            999999964

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.5e-10  Score=102.26  Aligned_cols=185  Identities=28%  Similarity=0.271  Sum_probs=130.7

Q ss_pred             CcEEEeeeCccccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc-c
Q 022302           92 RRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS-I  170 (299)
Q Consensus        92 ~~v~~l~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~  170 (299)
                      .+|+.+||+.++.-+.        ........++++|+.|+++.|.+.......   .-..+++|+.|.++.|.++.. +
T Consensus       146 ~~v~~LdLS~NL~~nw--------~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~~lK~L~l~~CGls~k~V  214 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNW--------FPVLKIAEQLPSLENLNLSSNRLSNFISSN---TTLLLSHLKQLVLNSCGLSWKDV  214 (505)
T ss_pred             CcceeecchhhhHHhH--------HHHHHHHHhcccchhcccccccccCCcccc---chhhhhhhheEEeccCCCCHHHH
Confidence            4678888877443211        112345678999999999999987665432   223678999999999999743 2


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc---
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG---  247 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---  247 (299)
                      ...+..+|+|+.|+|..|.... +.......+..|++|+|++|++......+  ..+.++.|+.|+++.|.+.+...   
T Consensus       215 ~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~--~~~~l~~L~~Lnls~tgi~si~~~d~  291 (505)
T KOG3207|consen  215 QWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGY--KVGTLPGLNQLNLSSTGIASIAEPDV  291 (505)
T ss_pred             HHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCccccccccc--ccccccchhhhhccccCcchhcCCCc
Confidence            3344578999999999995322 11123456778999999999444333333  56788999999999999887531   


Q ss_pred             -----ccCCCCCCEEeCCCCccCc-cCcccccCCCCCCEEecCCCCCCC
Q 022302          248 -----LAKLKNLEALDLSYNYYIH-SSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       248 -----l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                           ...+++|++|++..|++.. ..-..+..+++|+.|.+..|.+.-
T Consensus       292 ~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  292 ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence                 3457899999999999963 122455667888888888888864

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=4.7e-10  Score=102.49  Aligned_cols=157  Identities=40%  Similarity=0.466  Sum_probs=127.5

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCC-CCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK-QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      .+..++.++.|++.+|.++.+.+     ....++ +|+.|+++.|.+. .+|..+..+++|+.|++++|++.. ++. ..
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i~~-----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~-~~  182 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDIPP-----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPK-LL  182 (394)
T ss_pred             hhhcccceeEEecCCcccccCcc-----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhh-hh
Confidence            44556789999999999998876     456664 9999999999997 456678899999999999999984 665 44


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCC-CCCcccccCCCCCCEEeCCCCccCccCcccccCCCCC
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG-ITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNL  278 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  278 (299)
                      +..++|+.|++++|  .+. .+| ........|+.+.+++|+ +.....+..++++..+.+.+|++. ..+..++.++++
T Consensus       183 ~~~~~L~~L~ls~N--~i~-~l~-~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l  257 (394)
T COG4886         183 SNLSNLNNLDLSGN--KIS-DLP-PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL  257 (394)
T ss_pred             hhhhhhhheeccCC--ccc-cCc-hhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhcccccc
Confidence            58899999999999  554 344 333456679999999995 445556888899999999999988 457888999999


Q ss_pred             CEEecCCCCCCC
Q 022302          279 QVLDLSDNQNLT  290 (299)
Q Consensus       279 ~~L~l~~N~l~g  290 (299)
                      ++|++++|.++.
T Consensus       258 ~~L~~s~n~i~~  269 (394)
T COG4886         258 ETLDLSNNQISS  269 (394)
T ss_pred             ceeccccccccc
Confidence            999999999874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=7.6e-10  Score=73.15  Aligned_cols=59  Identities=34%  Similarity=0.432  Sum_probs=30.8

Q ss_pred             CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCc
Q 022302          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS  189 (299)
Q Consensus       127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  189 (299)
                      +|++|++++|++....+.    .|.++++|++|++++|.++...+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            455555555555554443    45555555555555555554444455555555555555554

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.91  E-value=2e-11  Score=110.95  Aligned_cols=157  Identities=29%  Similarity=0.308  Sum_probs=131.2

Q ss_pred             CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCC
Q 022302          124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR  203 (299)
Q Consensus       124 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  203 (299)
                      .+..-...|++.|++.....     .+..+..|+.+.|..|.+. .+|+.+.++..|.+|||+.|+++ .+|. .+..++
T Consensus        73 ~ltdt~~aDlsrNR~~elp~-----~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~-~lC~lp  144 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPE-----EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPD-GLCDLP  144 (722)
T ss_pred             cccchhhhhccccccccCch-----HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCCh-hhhcCc
Confidence            45566778999999987644     5666778889999999987 68999999999999999999998 4776 566665


Q ss_pred             CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEe
Q 022302          204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLD  282 (299)
Q Consensus       204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  282 (299)
                       |+.|-+++|  ++. .+| ..++....|..||.+.|.+...++ ++.+.+|+.|.+..|++. .+|+.+..++ |..||
T Consensus       145 -Lkvli~sNN--kl~-~lp-~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lD  217 (722)
T KOG0532|consen  145 -LKVLIVSNN--KLT-SLP-EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLD  217 (722)
T ss_pred             -ceeEEEecC--ccc-cCC-cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeee
Confidence             999999999  443 456 677888999999999999988765 899999999999999999 6888888665 89999


Q ss_pred             cCCCCCCCccCCCc
Q 022302          283 LSDNQNLTTLGKPL  296 (299)
Q Consensus       283 l~~N~l~g~ip~~~  296 (299)
                      +++|+++ .||-.|
T Consensus       218 fScNkis-~iPv~f  230 (722)
T KOG0532|consen  218 FSCNKIS-YLPVDF  230 (722)
T ss_pred             cccCcee-ecchhh
Confidence            9999997 588655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.87  E-value=9.9e-10  Score=94.63  Aligned_cols=189  Identities=22%  Similarity=0.260  Sum_probs=135.9

Q ss_pred             CcEEEeeeCccccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhh---------hHHhhcCCCCCCEEECC
Q 022302           92 RRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENR---------AYDSFGSLKQLKMLNLG  162 (299)
Q Consensus        92 ~~v~~l~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~~l~~l~~L~~L~Ls  162 (299)
                      ++.+.++|+.+-.|.-  +    ...-...+..++.|++|.|.+|.+...-...         .......-++|+++..+
T Consensus        92 ~~L~~ldLSDNA~G~~--g----~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPK--G----IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             CceeEeeccccccCcc--c----hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            4788899987433310  0    0011234667899999999999886553332         22344567899999999


Q ss_pred             CCCCCccc----hHhhccCCCCcEEeCCCCcCCCc---chhhhhcCCCCCCEEECCCCcCCCC--Ccc-chhhhccCCCC
Q 022302          163 DNFFNDSI----LPYLNTLTSLTTLILSDNSIEGS---RTKQGLANLRYLQVLDLSGNFNITS--GSL-TRLGLANLTNL  232 (299)
Q Consensus       163 ~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~---~p~~~~~~l~~L~~L~Ls~n~~~~~--~~~-~~~~~~~l~~L  232 (299)
                      +|++....    -..+...+.|+.+.++.|.+...   .....+..+++|+.|||..|  .++  |.. -...+..+++|
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN--tft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN--TFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc--hhhhHHHHHHHHHhcccchh
Confidence            99986433    23456678999999999987632   22236788999999999999  554  321 12567778899


Q ss_pred             cEEECCCCCCCCcc--c-----ccCCCCCCEEeCCCCccCcc----CcccccCCCCCCEEecCCCCC
Q 022302          233 KKLDLGSCGITTIQ--G-----LAKLKNLEALDLSYNYYIHS----SLEGLANLTNLQVLDLSDNQN  288 (299)
Q Consensus       233 ~~L~Ls~n~l~~~~--~-----l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l  288 (299)
                      +.|++++|.+..--  .     -...++|+.|.+.+|.++..    +...+...+.|+.|+|++|++
T Consensus       244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            99999999987542  1     23468999999999999853    334556789999999999999

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.6e-09  Score=71.55  Aligned_cols=59  Identities=42%  Similarity=0.573  Sum_probs=49.1

Q ss_pred             CCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCC
Q 022302          230 TNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN  288 (299)
Q Consensus       230 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l  288 (299)
                      ++|++|++++|+++..+  .+..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46788888888888766  377888899999999998877777888999999999999875

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.79  E-value=9.3e-09  Score=62.63  Aligned_cols=42  Identities=38%  Similarity=0.735  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHhhhhccC-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEec
Q 022302           37 LETERTALLEIKSFFIS-VSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCN   88 (299)
Q Consensus        37 ~~~~~~aL~~~~~~~~~-~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~   88 (299)
                      +++|++||++||+++.+ +.      ..+.+|+...   ..+|| .|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~------~~l~~W~~~~---~~~~C-~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPS------GVLSSWNPSS---DSDPC-SWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-------CCCTT--TT-----S-CC-CSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccC------cccccCCCcC---CCCCe-eeccEEeC
Confidence            36899999999999974 42      5789999821   16899 99999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.77  E-value=1.7e-10  Score=107.77  Aligned_cols=127  Identities=33%  Similarity=0.381  Sum_probs=100.8

Q ss_pred             CCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcE
Q 022302          155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK  234 (299)
Q Consensus       155 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~  234 (299)
                      +|...+.++|.+. .+.+++.-++.|+.|+|++|+++..   +.+..+++|++|||++|  .+. .+|......+. |+.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN--~L~-~vp~l~~~gc~-L~~  236 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYN--CLR-HVPQLSMVGCK-LQL  236 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccc--hhc-cccccchhhhh-hee
Confidence            4667788888886 4667788889999999999999853   36889999999999999  443 23323344454 999


Q ss_pred             EECCCCCCCCcccccCCCCCCEEeCCCCccCcc-CcccccCCCCCCEEecCCCCCC
Q 022302          235 LDLGSCGITTIQGLAKLKNLEALDLSYNYYIHS-SLEGLANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       235 L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~  289 (299)
                      |.+.+|.++....+.++++|+.||+++|-+.+. -.+.+..+..|+.|.|.||++.
T Consensus       237 L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  237 LNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            999999999988899999999999999988763 2234567788999999999884

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=7.6e-10  Score=93.61  Aligned_cols=160  Identities=25%  Similarity=0.222  Sum_probs=106.4

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCcc-chHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDS-ILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  198 (299)
                      .++.+.+|+.|.+.++++...+..    .+++-.+|+.|+++.+. ++.- ..-.+.+++.|+.|+|++|.+........
T Consensus       205 iLs~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~  280 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA  280 (419)
T ss_pred             HHHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence            355677778888888777766554    77777888888887753 3321 22345677888888888887664432212


Q ss_pred             hcC-CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCC-CCCc--ccccCCCCCCEEeCCCCccCccCccc---
Q 022302          199 LAN-LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG-ITTI--QGLAKLKNLEALDLSYNYYIHSSLEG---  271 (299)
Q Consensus       199 ~~~-l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~--~~l~~l~~L~~L~L~~N~l~~~~p~~---  271 (299)
                      +.+ -++|+.|++++..-.+....-......+++|.+|||++|. ++..  ..+.+++.|++|.++.|...  +|+.   
T Consensus       281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~  358 (419)
T KOG2120|consen  281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE  358 (419)
T ss_pred             HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee
Confidence            222 2577888888763323222222455678999999999986 4432  24788899999999888543  5543   


Q ss_pred             ccCCCCCCEEecCCC
Q 022302          272 LANLTNLQVLDLSDN  286 (299)
Q Consensus       272 l~~l~~L~~L~l~~N  286 (299)
                      +...|+|.+||+.++
T Consensus       359 l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  359 LNSKPSLVYLDVFGC  373 (419)
T ss_pred             eccCcceEEEEeccc
Confidence            467888999998765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.65  E-value=5.3e-09  Score=96.16  Aligned_cols=155  Identities=39%  Similarity=0.433  Sum_probs=86.9

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  201 (299)
                      +..+++|+.|++.+|.+..+..     .+..+++|++|++++|.++...  .+..++.|+.|++++|.+.. +.  .+..
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~~--~~~~  160 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-IS--GLES  160 (414)
T ss_pred             cccccceeeeeccccchhhccc-----chhhhhcchheecccccccccc--chhhccchhhheeccCcchh-cc--CCcc
Confidence            4455666666666666665543     2455666666666666665422  24455556666666666653 22  3444


Q ss_pred             CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCC----------------------cccccCCCC--CCEE
Q 022302          202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT----------------------IQGLAKLKN--LEAL  257 (299)
Q Consensus       202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----------------------~~~l~~l~~--L~~L  257 (299)
                      +..|+.+++++|  .....-+.. ...+.+++.+++.+|.+..                      ..++..+..  |+.+
T Consensus       161 l~~L~~l~l~~n--~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l  237 (414)
T KOG0531|consen  161 LKSLKLLDLSYN--RIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLREL  237 (414)
T ss_pred             chhhhcccCCcc--hhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHH
Confidence            566666666666  332211100 2444555555555555443                      333333333  6778


Q ss_pred             eCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          258 DLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       258 ~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      ++++|.+. .+++.+..+..+..+++.+|++..
T Consensus       238 ~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  238 YLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             hcccCccc-cccccccccccccccchhhccccc
Confidence            88888777 344566677778888888887753

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.59  E-value=8.1e-09  Score=94.97  Aligned_cols=129  Identities=37%  Similarity=0.459  Sum_probs=104.9

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  202 (299)
                      ..+..++.+++..|.+.....     .+..+++|+.|++..|.+... ...+..+++|++|++++|+|+. +.  .+..+
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~-----~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-i~--~l~~l  139 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILN-----HLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-LE--GLSTL  139 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhc-----ccccccceeeeeccccchhhc-ccchhhhhcchheecccccccc-cc--chhhc
Confidence            356778888899888877433     578899999999999999753 3337789999999999999985 43  46778


Q ss_pred             CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccC
Q 022302          203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYI  265 (299)
Q Consensus       203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~  265 (299)
                      +.|+.|++++|  .....   ..+..++.|+.+++++|+++....  ...+.+++.+++.+|.+.
T Consensus       140 ~~L~~L~l~~N--~i~~~---~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  140 TLLKELNLSGN--LISDI---SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             cchhhheeccC--cchhc---cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            88999999999  54432   345568999999999999998877  588899999999999876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.57  E-value=3.5e-08  Score=82.71  Aligned_cols=174  Identities=21%  Similarity=0.179  Sum_probs=127.0

Q ss_pred             ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhh-------------ccCCCCcEEeC
Q 022302          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-------------NTLTSLTTLIL  185 (299)
Q Consensus       119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-------------~~l~~L~~L~L  185 (299)
                      ...+-+|++|+.++||.|.|....|+.+...++.-+.|++|.+++|.+...--..+             .+-|.|++.+.
T Consensus        85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            44677899999999999999998888787888999999999999998753222222             24578999999


Q ss_pred             CCCcCCCcchh----hhhcCCCCCCEEECCCCcCCCCCccc--hhhhccCCCCcEEECCCCCCCCcc------cccCCCC
Q 022302          186 SDNSIEGSRTK----QGLANLRYLQVLDLSGNFNITSGSLT--RLGLANLTNLKKLDLGSCGITTIQ------GLAKLKN  253 (299)
Q Consensus       186 ~~n~l~~~~p~----~~~~~l~~L~~L~Ls~n~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~  253 (299)
                      .+|++.. .+.    ..+..-.+|+++.+..|.+.-.|...  -..+..+.+|+.||+++|.++...      .+..++.
T Consensus       165 grNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         165 GRNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             ccchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            9999873 222    12333368999999999555544321  134566889999999999887543      3667778


Q ss_pred             CCEEeCCCCccCccCcccc------cCCCCCCEEecCCCCCCCccC
Q 022302          254 LEALDLSYNYYIHSSLEGL------ANLTNLQVLDLSDNQNLTTLG  293 (299)
Q Consensus       254 L~~L~L~~N~l~~~~p~~l------~~l~~L~~L~l~~N~l~g~ip  293 (299)
                      |+.|++.+|-++.....++      ...++|..|...+|...|.+-
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i  289 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII  289 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence            9999999998775433332      145778888888888776553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=7.2e-08  Score=81.81  Aligned_cols=167  Identities=21%  Similarity=0.229  Sum_probs=99.0

Q ss_pred             CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCC
Q 022302          124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR  203 (299)
Q Consensus       124 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  203 (299)
                      ..++++++||.+|.++...  .+++.+.++|.|+.|+++.|++...+...-....+|++|.|.+..+.-.-....+..+|
T Consensus        69 ~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            4567777888888777652  33446677888888888888776433221134457777777777665433333556677


Q ss_pred             CCCEEECCCCcCC---CCC-ccch----------------------hhhccCCCCcEEECCCCCCCCcc---cccCCCCC
Q 022302          204 YLQVLDLSGNFNI---TSG-SLTR----------------------LGLANLTNLKKLDLGSCGITTIQ---GLAKLKNL  254 (299)
Q Consensus       204 ~L~~L~Ls~n~~~---~~~-~~~~----------------------~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L  254 (299)
                      .+++|+++.|...   ... .+.+                      ..-..++++..+.+..|.+....   ....++.+
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence            7777777766111   100 0000                      01112466666667666555432   24455666


Q ss_pred             CEEeCCCCccCcc-CcccccCCCCCCEEecCCCCCCCcc
Q 022302          255 EALDLSYNYYIHS-SLEGLANLTNLQVLDLSDNQNLTTL  292 (299)
Q Consensus       255 ~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~g~i  292 (299)
                      .-|+|+.|++... .-+.+..+++|+.|.+.+|++...+
T Consensus       227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            6777777777642 2356677788888888888776544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.45  E-value=1e-07  Score=94.37  Aligned_cols=135  Identities=28%  Similarity=0.297  Sum_probs=65.1

Q ss_pred             hcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccC
Q 022302          150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANL  229 (299)
Q Consensus       150 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l  229 (299)
                      |..++.|+.|||++|.=-+.+|..++++-+|++|++++..+. .+|. .+.++..|.+|++..+  .....++ .....+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~--~~l~~~~-~i~~~L  641 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVT--GRLESIP-GILLEL  641 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhheeccccc--ccccccc-chhhhc
Confidence            445555555555554433445555555555555555555554 3444 4555555555555544  3222222 333335


Q ss_pred             CCCcEEECCCCCCCCcc----cccCCCCCCEE--------------------------eCCCCccCccCcccccCCCCCC
Q 022302          230 TNLKKLDLGSCGITTIQ----GLAKLKNLEAL--------------------------DLSYNYYIHSSLEGLANLTNLQ  279 (299)
Q Consensus       230 ~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L--------------------------~L~~N~l~~~~p~~l~~l~~L~  279 (299)
                      ++|++|.+.........    .+..+.+|+.+                          .+.++... ..+..+..+.+|+
T Consensus       642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~  720 (889)
T KOG4658|consen  642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLE  720 (889)
T ss_pred             ccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcc
Confidence            55555555333211100    12222222222                          22222222 3455667788888


Q ss_pred             EEecCCCCCCC
Q 022302          280 VLDLSDNQNLT  290 (299)
Q Consensus       280 ~L~l~~N~l~g  290 (299)
                      .|.+.++.+..
T Consensus       721 ~L~i~~~~~~e  731 (889)
T KOG4658|consen  721 ELSILDCGISE  731 (889)
T ss_pred             eEEEEcCCCch
Confidence            88888888753

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1e-08  Score=86.90  Aligned_cols=158  Identities=23%  Similarity=0.231  Sum_probs=115.7

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCc-CCCcchhhhhcCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEGSRTKQGLANLRY  204 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~~l~~  204 (299)
                      +.|+++||+...++..   .+...+..+.+|+.|.+.++++.+.+...+++-.+|+.|+|+.+. ++.....-.+.+++.
T Consensus       185 sRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            3588999998877654   222356778999999999999999888899999999999998765 443222235788999


Q ss_pred             CCEEECCCCcCCCCCccchhhhcc-CCCCcEEECCCCC--CCC--ccc-ccCCCCCCEEeCCCCc-cCccCcccccCCCC
Q 022302          205 LQVLDLSGNFNITSGSLTRLGLAN-LTNLKKLDLGSCG--ITT--IQG-LAKLKNLEALDLSYNY-YIHSSLEGLANLTN  277 (299)
Q Consensus       205 L~~L~Ls~n~~~~~~~~~~~~~~~-l~~L~~L~Ls~n~--l~~--~~~-l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~  277 (299)
                      |.+|+++.+  ......-.....+ -++|+.|+++++.  +..  ... ...+++|.+|||++|. ++......+.+++.
T Consensus       262 L~~LNlsWc--~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  262 LDELNLSWC--FLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             HhhcCchHh--hccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            999999998  4332222122333 3689999998875  221  111 5688999999999874 56556667789999


Q ss_pred             CCEEecCCCCC
Q 022302          278 LQVLDLSDNQN  288 (299)
Q Consensus       278 L~~L~l~~N~l  288 (299)
                      |++|.++.|-.
T Consensus       340 L~~lSlsRCY~  350 (419)
T KOG2120|consen  340 LQHLSLSRCYD  350 (419)
T ss_pred             heeeehhhhcC
Confidence            99999998853

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.45  E-value=2.5e-09  Score=100.10  Aligned_cols=125  Identities=29%  Similarity=0.286  Sum_probs=89.1

Q ss_pred             CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (299)
Q Consensus       127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  206 (299)
                      .|...+++.|.+.....     ++.-++.|+.|||++|++..  ...+..+++|++|||+.|++. .+|.-....+. |.
T Consensus       165 ~L~~a~fsyN~L~~mD~-----SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDE-----SLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQ  235 (1096)
T ss_pred             hHhhhhcchhhHHhHHH-----HHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhhh-he
Confidence            46666777777665433     67777888888888888864  236778888888888888887 35542233333 88


Q ss_pred             EEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccC
Q 022302          207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYI  265 (299)
Q Consensus       207 ~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~  265 (299)
                      .|++.+|  .+...   ..+.++.+|+.||+++|-+.+..   ++..+..|+.|+|.+|.+-
T Consensus       236 ~L~lrnN--~l~tL---~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  236 LLNLRNN--ALTTL---RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeeccc--HHHhh---hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8888888  54422   35677888888888888776654   4666777888888888764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.20  E-value=4.6e-06  Score=70.19  Aligned_cols=189  Identities=22%  Similarity=0.245  Sum_probs=121.8

Q ss_pred             CcEEEeeeCccccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhh-------hHHhhcCCCCCCEEECCCC
Q 022302           92 RRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENR-------AYDSFGSLKQLKMLNLGDN  164 (299)
Q Consensus        92 ~~v~~l~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~~l~~l~~L~~L~Ls~n  164 (299)
                      ..++.++|+++..|.-      ...-....+.+-.+|+..+++.- ++|...+.       +...+.+||+|+..+||.|
T Consensus        30 d~~~evdLSGNtigtE------A~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          30 DELVEVDLSGNTIGTE------AMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             cceeEEeccCCcccHH------HHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            4678888888444310      01111234556677888887764 33332221       2235678899999999999


Q ss_pred             CCCccchHh----hccCCCCcEEeCCCCcCCC----cchh--------hhhcCCCCCCEEECCCCcCCCCC-c--cchhh
Q 022302          165 FFNDSILPY----LNTLTSLTTLILSDNSIEG----SRTK--------QGLANLRYLQVLDLSGNFNITSG-S--LTRLG  225 (299)
Q Consensus       165 ~l~~~~p~~----l~~l~~L~~L~L~~n~l~~----~~p~--------~~~~~l~~L~~L~Ls~n~~~~~~-~--~~~~~  225 (299)
                      .|....|+.    ++.-+.|++|.+++|.+.-    .+..        .-..+-|.|+.+..+.|  .+.. .  .....
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN--Rlengs~~~~a~~  180 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN--RLENGSKELSAAL  180 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc--hhccCcHHHHHHH
Confidence            887665554    4566789999999887641    1110        01234578999999988  4432 1  11123


Q ss_pred             hccCCCCcEEECCCCCCCCc--c-----cccCCCCCCEEeCCCCccCcc----CcccccCCCCCCEEecCCCCCC
Q 022302          226 LANLTNLKKLDLGSCGITTI--Q-----GLAKLKNLEALDLSYNYYIHS----SLEGLANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       226 ~~~l~~L~~L~Ls~n~l~~~--~-----~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~  289 (299)
                      +..-.+|+.+.+..|.+...  .     .+..+.+|+.||+++|-++-.    +...+..++.|+.|.+..|-++
T Consensus       181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            33445888999999988643  2     366788999999999988743    3345567888999999988775

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.19  E-value=1.4e-06  Score=86.60  Aligned_cols=114  Identities=28%  Similarity=0.285  Sum_probs=74.8

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      ..|..++.|+.|||++|.-.+..|.    .++.+-+||+|+++...++ .+|..++++..|.+|++..+.....++. ..
T Consensus       565 ~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~  638 (889)
T KOG4658|consen  565 EFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-IL  638 (889)
T ss_pred             HHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hh
Confidence            3477788888888888766666676    7788888888888888877 5777888888888888877765544432 55


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCC
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC  240 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n  240 (299)
                      ..+.+|++|.+...........- ..+..+.+|+.+.....
T Consensus       639 ~~L~~Lr~L~l~~s~~~~~~~~l-~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  639 LELQSLRVLRLPRSALSNDKLLL-KELENLEHLENLSITIS  678 (889)
T ss_pred             hhcccccEEEeeccccccchhhH-Hhhhcccchhhheeecc
Confidence            56788888877665212222222 33445555555555333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.18  E-value=3e-06  Score=68.27  Aligned_cols=102  Identities=30%  Similarity=0.298  Sum_probs=47.2

Q ss_pred             CCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcE
Q 022302          155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK  234 (299)
Q Consensus       155 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~  234 (299)
                      ....+||+.|.+..  -..|..++.|.+|.+++|+|+. +.+..-..+++|..|.+.+|.+.-.|.+.  .+..|++|++
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L~~  117 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLD--PLASCPKLEY  117 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcc--hhccCCccce
Confidence            34445555555431  1223444555555555555553 22212233445555555555333333332  3445555555


Q ss_pred             EECCCCCCCCcc-----cccCCCCCCEEeCCC
Q 022302          235 LDLGSCGITTIQ-----GLAKLKNLEALDLSY  261 (299)
Q Consensus       235 L~Ls~n~l~~~~-----~l~~l~~L~~L~L~~  261 (299)
                      |.+-+|..+...     .+..+++|+.||++.
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            555555544433     144555555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=2.1e-06  Score=52.31  Aligned_cols=36  Identities=47%  Similarity=0.522  Sum_probs=19.9

Q ss_pred             CCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCC
Q 022302          253 NLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       253 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  289 (299)
                      +|++|++++|+++ .+|+.++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666665 34445566666666666666554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=1.6e-06  Score=73.85  Aligned_cols=177  Identities=23%  Similarity=0.195  Sum_probs=118.8

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhh-cCCCCCCEEECCCCCCCcc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF-GSLKQLKMLNLGDNFFNDS  169 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~  169 (299)
                      .+|..+||.+ .++.         ..-....+.+++.|+.|+++.|.+...+.     .+ ..+.+|+.|-|.+..+.-.
T Consensus        71 ~~v~elDL~~N~iSd---------WseI~~ile~lP~l~~LNls~N~L~s~I~-----~lp~p~~nl~~lVLNgT~L~w~  136 (418)
T KOG2982|consen   71 TDVKELDLTGNLISD---------WSEIGAILEQLPALTTLNLSCNSLSSDIK-----SLPLPLKNLRVLVLNGTGLSWT  136 (418)
T ss_pred             hhhhhhhcccchhcc---------HHHHHHHHhcCccceEeeccCCcCCCccc-----cCcccccceEEEEEcCCCCChh
Confidence            3677777776 3322         11223467899999999999999988765     33 4678999999999887643


Q ss_pred             -chHhhccCCCCcEEeCCCCcCCCc---------chh-------------------hhhcCCCCCCEEECCCCcCCCCCc
Q 022302          170 -ILPYLNTLTSLTTLILSDNSIEGS---------RTK-------------------QGLANLRYLQVLDLSGNFNITSGS  220 (299)
Q Consensus       170 -~p~~l~~l~~L~~L~L~~n~l~~~---------~p~-------------------~~~~~l~~L~~L~Ls~n~~~~~~~  220 (299)
                       ....+..+|.+++|.++.|.+...         +.+                   ..-.-++++..+.+..|.+..  .
T Consensus       137 ~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~--~  214 (418)
T KOG2982|consen  137 QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT--E  214 (418)
T ss_pred             hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccc--h
Confidence             344567788888888888843210         000                   001224667767777663222  2


Q ss_pred             cchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccC----cc--cccCCCCCCEEecC
Q 022302          221 LTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSS----LE--GLANLTNLQVLDLS  284 (299)
Q Consensus       221 ~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~----p~--~l~~l~~L~~L~l~  284 (299)
                      ........++.+..|+|+.|++..+.   .+..+++|..|++++|.+...+    +.  .++.+++++.|+=+
T Consensus       215 s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  215 SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            22234555677889999999998765   4888999999999999876533    22  34678888877644

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.07  E-value=5.9e-07  Score=67.96  Aligned_cols=135  Identities=23%  Similarity=0.154  Sum_probs=75.2

Q ss_pred             ccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCE
Q 022302          128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV  207 (299)
Q Consensus       128 L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~  207 (299)
                      +..++|+.|.+.-...  ....+....+|...+|++|.|....+..-..++.++.|++++|+++ .+|. ++..++.|+.
T Consensus        29 ~h~ldLssc~lm~i~d--avy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPe-E~Aam~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIAD--AVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPE-ELAAMPALRS  104 (177)
T ss_pred             hhhcccccchhhHHHH--HHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchH-HHhhhHHhhh
Confidence            4456666665543321  1113445556666777777776433333334557777777777777 4666 4777777777


Q ss_pred             EECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcc
Q 022302          208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLE  270 (299)
Q Consensus       208 L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~  270 (299)
                      |+++.|  .+.. .| ..+..+.++..|+..+|.+..++. +...+..-..++.++.+.+.-+.
T Consensus       105 lNl~~N--~l~~-~p-~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  105 LNLRFN--PLNA-EP-RVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             cccccC--cccc-ch-HHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCcc
Confidence            777777  4432 23 344446677777777776655432 11112222233455555554443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.05  E-value=5.6e-06  Score=50.46  Aligned_cols=36  Identities=44%  Similarity=0.552  Sum_probs=24.2

Q ss_pred             CCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccC
Q 022302          230 TNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYI  265 (299)
Q Consensus       230 ~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~  265 (299)
                      ++|++|++++|+++..++ +.++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            356777777777777666 777777777777777766

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.01  E-value=3.7e-05  Score=69.43  Aligned_cols=54  Identities=9%  Similarity=-0.004  Sum_probs=27.9

Q ss_pred             CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCC
Q 022302          125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN  188 (299)
Q Consensus       125 l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  188 (299)
                      +.+++.|++++|.++... .       -..+|++|.++++.--..+|..+  .++|++|++++|
T Consensus        51 ~~~l~~L~Is~c~L~sLP-~-------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP-V-------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCcccC-C-------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            456666666666555432 1       12346666666533222344333  245666666666

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.99  E-value=5.4e-07  Score=68.19  Aligned_cols=135  Identities=23%  Similarity=0.181  Sum_probs=98.8

Q ss_pred             CCCCEEECCCCCCCccchH---hhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCC
Q 022302          154 KQLKMLNLGDNFFNDSILP---YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT  230 (299)
Q Consensus       154 ~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~  230 (299)
                      ..+..++|+++++- .++.   .+.....|...+|++|.+. ..|++.-...+.++.|++++|  .+. .+| ..+..++
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~n--eis-dvP-eE~Aam~  100 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANN--EIS-DVP-EELAAMP  100 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchh--hhh-hch-HHHhhhH
Confidence            45677899999875 3444   4445567888899999998 477755566779999999999  554 467 5689999


Q ss_pred             CCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302          231 NLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       231 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~  295 (299)
                      .|+.|+++.|.+...+ .+..+.++..|+..+|.+. .+|-.+.--+..-..+++++++.+.-|..
T Consensus       101 aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  101 ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK  165 (177)
T ss_pred             HhhhcccccCccccchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence            9999999999988765 3666888999999999887 55544432233344566777777765543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.99  E-value=1e-05  Score=65.26  Aligned_cols=108  Identities=27%  Similarity=0.265  Sum_probs=57.3

Q ss_pred             CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (299)
Q Consensus       127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  206 (299)
                      +...+||++|.+....      .|..++.|.+|.+++|+++..-|.--..+++|+.|.|.+|.+.....-..+..+++|+
T Consensus        43 ~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhhcc------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            4455666666654432      3555666666666666666544443334566666666666655221112355666666


Q ss_pred             EEECCCCcCCCCCccchhhhccCCCCcEEECCCC
Q 022302          207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC  240 (299)
Q Consensus       207 ~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n  240 (299)
                      +|.+-+|...-........+..+++|+.||.+.-
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            6666666211111111123455666777766553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.93  E-value=9.5e-06  Score=78.69  Aligned_cols=57  Identities=25%  Similarity=0.430  Sum_probs=24.9

Q ss_pred             CCCCCEEECCCCCCCc-cchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCC
Q 022302          153 LKQLKMLNLGDNFFND-SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSG  212 (299)
Q Consensus       153 l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~  212 (299)
                      +|.|+.|.+++-.+.. ..-....++|+|..||+++++++. +  ..++++++|++|.+.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SGISRLKNLQVLSMRN  204 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HHHhccccHHHHhccC
Confidence            4555555555444321 122223344555555555554442 2  2344445555444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=1.5e-05  Score=77.29  Aligned_cols=134  Identities=25%  Similarity=0.322  Sum_probs=99.1

Q ss_pred             CCCCEEECCCCCC-CccchHhhc-cCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCC
Q 022302          154 KQLKMLNLGDNFF-NDSILPYLN-TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN  231 (299)
Q Consensus       154 ~~L~~L~Ls~n~l-~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~  231 (299)
                      .+|++||+++... +..=|..++ .+|+|+.|.+++-.+...--.....++++|+.||+|+.  .....   ..++++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T--nI~nl---~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT--NISNL---SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC--CccCc---HHHhcccc
Confidence            6799999988653 222334444 58999999999877654322346788999999999998  44322   57889999


Q ss_pred             CcEEECCCCCCCCc---ccccCCCCCCEEeCCCCccCccC--c----ccccCCCCCCEEecCCCCCCCcc
Q 022302          232 LKKLDLGSCGITTI---QGLAKLKNLEALDLSYNYYIHSS--L----EGLANLTNLQVLDLSDNQNLTTL  292 (299)
Q Consensus       232 L~~L~Ls~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~--p----~~l~~l~~L~~L~l~~N~l~g~i  292 (299)
                      |+.|.+.+=.+...   ..+..+++|+.||+|........  .    +.-..+|+|+.||.++..+.+.+
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            99999988777653   35889999999999987665322  1    22246899999999999887654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.68  E-value=1.6e-05  Score=66.62  Aligned_cols=62  Identities=32%  Similarity=0.372  Sum_probs=28.4

Q ss_pred             hcCCCCCCEEECCCC--CCCccchHhhccCCCCcEEeCCCCcCCC--cchhhhhcCCCCCCEEECCCC
Q 022302          150 FGSLKQLKMLNLGDN--FFNDSILPYLNTLTSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGN  213 (299)
Q Consensus       150 l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~Ls~n  213 (299)
                      +..+++|+.|.++.|  +.++.++.....+|+|++|+++.|++..  .++  .+..+.+|..|++.+|
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLKELENLKSLDLFNC  126 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhhhhcchhhhhcccC
Confidence            344555555555555  3333333333344555555555555441  111  1334444555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.58  E-value=3.5e-05  Score=64.51  Aligned_cols=87  Identities=29%  Similarity=0.300  Sum_probs=46.7

Q ss_pred             ccCCCCCccEEeCCCC--CCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc-chHhhccCCCCcEEeCCCCcCCCcc--h
Q 022302          121 LFHPFEELQRLDLPGN--WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS-ILPYLNTLTSLTTLILSDNSIEGSR--T  195 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~--p  195 (299)
                      .+-.+++|+.|.++.|  .+.+-.+.    ....+++|++|+++.|++... --..+..+.+|..|++.+|..+..-  -
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyr  135 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYR  135 (260)
T ss_pred             cCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHH
Confidence            4455667777777777  44443332    334457777777777776521 1112345566667777766655311  0


Q ss_pred             hhhhcCCCCCCEEECC
Q 022302          196 KQGLANLRYLQVLDLS  211 (299)
Q Consensus       196 ~~~~~~l~~L~~L~Ls  211 (299)
                      ...|.-+++|++|+-.
T Consensus       136 e~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  136 EKVFLLLPSLKYLDGC  151 (260)
T ss_pred             HHHHHHhhhhcccccc
Confidence            1234445666655543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.40  E-value=0.0011  Score=60.06  Aligned_cols=119  Identities=15%  Similarity=0.132  Sum_probs=73.9

Q ss_pred             hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302          149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN  228 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~  228 (299)
                      .+..+.++++|++++|.++. +|.   -..+|++|.++++.-...+|. .+  .++|+.|++++|  .....+|      
T Consensus        47 r~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~C--s~L~sLP------  111 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHC--PEISGLP------  111 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCc--ccccccc------
Confidence            55667899999999998874 451   224799999988554334553 33  258899999987  4333344      


Q ss_pred             CCCCcEEECCCCCCCC---ccc----c---------------cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCC
Q 022302          229 LTNLKKLDLGSCGITT---IQG----L---------------AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN  286 (299)
Q Consensus       229 l~~L~~L~Ls~n~l~~---~~~----l---------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N  286 (299)
                       .+|+.|++..+.+..   .|.    +               .-.++|++|++++|... ..|+.+.  .+|+.|+++.|
T Consensus       112 -~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        112 -ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             -cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence             245566665544322   211    0               01246888888877755 3444443  47788888766

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=2.1e-05  Score=66.49  Aligned_cols=102  Identities=32%  Similarity=0.318  Sum_probs=66.2

Q ss_pred             CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCC
Q 022302          125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY  204 (299)
Q Consensus       125 l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  204 (299)
                      +.+.+.|++=+|.+..+.      ...+++.|+.|.||-|+++..  ..+..|++|++|+|..|.|...-....+.++++
T Consensus        18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            456677777777777652      345677888888888877643  336677788888888887775333335677778


Q ss_pred             CCEEECCCCcCCCCCccc----hhhhccCCCCcEEE
Q 022302          205 LQVLDLSGNFNITSGSLT----RLGLANLTNLKKLD  236 (299)
Q Consensus       205 L~~L~Ls~n~~~~~~~~~----~~~~~~l~~L~~L~  236 (299)
                      |+.|-|..|  .--|.-+    ...+..+|+|+.||
T Consensus        90 Lr~LWL~EN--PCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDEN--PCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccC--CcccccchhHHHHHHHHcccchhcc
Confidence            888877777  3333222    13455567777765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.23  E-value=0.0011  Score=50.20  Aligned_cols=86  Identities=21%  Similarity=0.336  Sum_probs=37.6

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      ..|.++++|+.+.+.. .+..+...    .|..+++|+.+.+..+ +.......+.++++|+.+.+.+ .+. .++...|
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F   77 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAF   77 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccc
Confidence            3455666666666653 34444333    5566666666666553 4333334455555666666644 222 2333345


Q ss_pred             cCCCCCCEEECCCC
Q 022302          200 ANLRYLQVLDLSGN  213 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n  213 (299)
                      ..+++|+.+++..+
T Consensus        78 ~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN   91 (129)
T ss_dssp             TT-TTECEEEETTT
T ss_pred             cccccccccccCcc
Confidence            55566666665443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.00  E-value=0.0023  Score=48.35  Aligned_cols=120  Identities=22%  Similarity=0.313  Sum_probs=59.3

Q ss_pred             hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302          149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN  228 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~  228 (299)
                      .|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +. .++...|..+++++.+.+..+  ..  .++...+..
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~--~~--~i~~~~F~~   79 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNN--LK--SIGDNAFSN   79 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETST--T---EE-TTTTTT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccccc--cc--ccccccccc
Confidence            677778888888874 455444556777878888888775 44 355556778878888888654  11  223256677


Q ss_pred             CCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCC
Q 022302          229 LTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNL  278 (299)
Q Consensus       229 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  278 (299)
                      +++|+.+++..+ ++...  .+..+ +|+.+.+.. .++......|.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            888888888654 44332  35565 777777765 3333344555666555

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=4.7e-05  Score=64.50  Aligned_cols=98  Identities=29%  Similarity=0.236  Sum_probs=68.3

Q ss_pred             CCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc---ccCCCC
Q 022302          177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG---LAKLKN  253 (299)
Q Consensus       177 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---l~~l~~  253 (299)
                      +.+.+.|+..++.+.+ +  +....|+.|++|.|+-|  .++..   ..+..|++|+.|.|..|.|.++..   +.++++
T Consensus        18 l~~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvN--kIssL---~pl~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVN--KISSL---APLQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccH-H--HHHHhcccceeEEeecc--ccccc---hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            4567778888887774 3  25677888888888888  55433   346788888888888888877654   667788


Q ss_pred             CCEEeCCCCccCccCcc-----cccCCCCCCEEe
Q 022302          254 LEALDLSYNYYIHSSLE-----GLANLTNLQVLD  282 (299)
Q Consensus       254 L~~L~L~~N~l~~~~p~-----~l~~l~~L~~L~  282 (299)
                      |+.|.|..|.-.|.-+.     .+..+|+|+.||
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888888876655443     234566666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.75  E-value=0.0005  Score=64.16  Aligned_cols=114  Identities=21%  Similarity=0.113  Sum_probs=47.8

Q ss_pred             CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCC-CCCccc----hHhhccCCCCcEEeCCCCc-CCCcchhhh
Q 022302          125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDSI----LPYLNTLTSLTTLILSDNS-IEGSRTKQG  198 (299)
Q Consensus       125 l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~----p~~l~~l~~L~~L~L~~n~-l~~~~p~~~  198 (299)
                      ++.|+.+.+.++.-....  .+......+++|+.|+++.+ ......    ......+.+|+.|+++.+. ++...-...
T Consensus       187 ~~~L~~l~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDD--SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhcccccCChh--hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            455555555554222110  01114455566666666542 111111    1122234556666666555 333222211


Q ss_pred             hcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCC
Q 022302          199 LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG  241 (299)
Q Consensus       199 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  241 (299)
                      ...+++|++|.+.++.. .+..--......++.|++|++++|.
T Consensus       265 ~~~c~~L~~L~l~~c~~-lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSN-LTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             HhhCCCcceEccCCCCc-cchhHHHHHHHhcCcccEEeeecCc
Confidence            22255666666554410 1211111333445556666666554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.19  E-value=0.00012  Score=68.23  Aligned_cols=166  Identities=28%  Similarity=0.236  Sum_probs=86.8

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCC-CCCCEEECCCCCCCcc----chHhhccCCCCcEEeCCCCcCCCc---
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGS---  193 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~---  193 (299)
                      +...+.|..|++++|.+.+.....+...+... +.+++|++..|.++..    +...+.....+++++++.|.+...   
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~  190 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL  190 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence            44556666666666666644433343444443 4555666666655432    333444555666666666665310   


Q ss_pred             chhhhhc----CCCCCCEEECCCCcCCCCCccc---hhhhccCCC-CcEEECCCCCCCCcc------cccCC-CCCCEEe
Q 022302          194 RTKQGLA----NLRYLQVLDLSGNFNITSGSLT---RLGLANLTN-LKKLDLGSCGITTIQ------GLAKL-KNLEALD  258 (299)
Q Consensus       194 ~p~~~~~----~l~~L~~L~Ls~n~~~~~~~~~---~~~~~~l~~-L~~L~Ls~n~l~~~~------~l~~l-~~L~~L~  258 (299)
                      .....+.    ...++++|++.++  ..+...-   ...+...+. +..+++..|.+.+..      .+..+ ..++.++
T Consensus       191 ~l~~~l~~~~~~~~~le~L~L~~~--~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~  268 (478)
T KOG4308|consen  191 VLSQALESAASPLSSLETLKLSRC--GVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD  268 (478)
T ss_pred             HHhhhhhhhhcccccHHHHhhhhc--CcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence            0011222    3456666666666  3221100   022333333 555666666655431      13334 5667777


Q ss_pred             CCCCccCcc----CcccccCCCCCCEEecCCCCCC
Q 022302          259 LSYNYYIHS----SLEGLANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       259 L~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~  289 (299)
                      ++.|.|+..    +.+.+..+++++++.+++|++.
T Consensus       269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            777777653    3344556667777777777764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.97  E-value=0.0033  Score=31.92  Aligned_cols=19  Identities=42%  Similarity=0.350  Sum_probs=9.6

Q ss_pred             CCEEeCCCCccCccCccccc
Q 022302          254 LEALDLSYNYYIHSSLEGLA  273 (299)
Q Consensus       254 L~~L~L~~N~l~~~~p~~l~  273 (299)
                      |++|++++|+++ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.84  E-value=0.00023  Score=66.31  Aligned_cols=166  Identities=31%  Similarity=0.295  Sum_probs=120.6

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhh----ccC-CCCcEEeCCCCcCCCcchh---h
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL----NTL-TSLTTLILSDNSIEGSRTK---Q  197 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~p~---~  197 (299)
                      ..+..+.|.+|.+.......+...+...+.|+.|+++.|.+.+..-..+    ... +.+++|++..|.+++..-.   .
T Consensus        87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            3488899999999988888888899999999999999999975433333    233 5688899988888753221   2


Q ss_pred             hhcCCCCCCEEECCCCcCCCCCccc-hhhhc----cCCCCcEEECCCCCCCCcc------cccCCCC-CCEEeCCCCccC
Q 022302          198 GLANLRYLQVLDLSGNFNITSGSLT-RLGLA----NLTNLKKLDLGSCGITTIQ------GLAKLKN-LEALDLSYNYYI  265 (299)
Q Consensus       198 ~~~~l~~L~~L~Ls~n~~~~~~~~~-~~~~~----~l~~L~~L~Ls~n~l~~~~------~l~~l~~-L~~L~L~~N~l~  265 (299)
                      .+.....+++++++.|.+...|... ...+.    ...++++|.+++|.++...      .+...+. +..+++..|++.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            4556789999999999443233211 12333    4678999999999988543      2555555 777999999988


Q ss_pred             cc----CcccccCC-CCCCEEecCCCCCCCc
Q 022302          266 HS----SLEGLANL-TNLQVLDLSDNQNLTT  291 (299)
Q Consensus       266 ~~----~p~~l~~l-~~L~~L~l~~N~l~g~  291 (299)
                      +.    ..+.+..+ ..++.++++.|.|+..
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~  277 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEK  277 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence            54    33455556 7789999999999754

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.74  E-value=0.005  Score=55.18  Aligned_cols=136  Identities=28%  Similarity=0.251  Sum_probs=82.0

Q ss_pred             cCCCCCCEEECCCCCC-CccchHhhc-cCCCCcEEeCCCCc-CCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhc
Q 022302          151 GSLKQLKMLNLGDNFF-NDSILPYLN-TLTSLTTLILSDNS-IEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLA  227 (299)
Q Consensus       151 ~~l~~L~~L~Ls~n~l-~~~~p~~l~-~l~~L~~L~L~~n~-l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~  227 (299)
                      ..+..|+.|+.+++.. +...-..++ +.++|++|-++.++ ++..-....-.+.+.|+.+++........+.+. ..-.
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~-sls~  369 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA-SLSR  369 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh-hhcc
Confidence            4567778888877543 333333443 56788888888776 332111112345678888888877444444443 4446


Q ss_pred             cCCCCcEEECCCCCC-CCc--cc----ccCCCCCCEEeCCCCccC-ccCcccccCCCCCCEEecCCCC
Q 022302          228 NLTNLKKLDLGSCGI-TTI--QG----LAKLKNLEALDLSYNYYI-HSSLEGLANLTNLQVLDLSDNQ  287 (299)
Q Consensus       228 ~l~~L~~L~Ls~n~l-~~~--~~----l~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~l~~N~  287 (299)
                      +++.|+.+.+++|.. ++.  ..    -.....|+.+.|+++..+ ....+.+..+++|+.+++-+++
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            678888888887763 332  11    234456777777777644 3344556677777777776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.54  E-value=0.0046  Score=31.38  Aligned_cols=12  Identities=42%  Similarity=0.443  Sum_probs=5.4

Q ss_pred             CcEEeCCCCcCC
Q 022302          180 LTTLILSDNSIE  191 (299)
Q Consensus       180 L~~L~L~~n~l~  191 (299)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.62  E-value=0.078  Score=49.37  Aligned_cols=157  Identities=28%  Similarity=0.238  Sum_probs=92.9

Q ss_pred             ccCCCCCccEEeCCCC-CCCCcchhhhHHhhcCCCCCCEEECCCCC-CCccchHhhcc-CCCCcEEeCCCCc-CCCcchh
Q 022302          121 LFHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLNT-LTSLTTLILSDNS-IEGSRTK  196 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~-l~~L~~L~L~~n~-l~~~~p~  196 (299)
                      ....+++|+.|+++++ ......+.........+++|+.|+++.+. +++..-..++. +++|++|.+.++. +++..-.
T Consensus       209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~  288 (482)
T KOG1947|consen  209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV  288 (482)
T ss_pred             HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence            4567789999999873 32222222222244567889999999887 66665555554 7899999987777 5654444


Q ss_pred             hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCC----CCCc-----------c----cccCCCCCCEE
Q 022302          197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG----ITTI-----------Q----GLAKLKNLEAL  257 (299)
Q Consensus       197 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~----l~~~-----------~----~l~~l~~L~~L  257 (299)
                      .....++.|++|+++++.......+. ....++++++.|.+....    ++..           .    ....+++++.+
T Consensus       289 ~i~~~~~~L~~L~l~~c~~~~d~~l~-~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~  367 (482)
T KOG1947|consen  289 SIAERCPSLRELDLSGCHGLTDSGLE-ALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL  367 (482)
T ss_pred             HHHHhcCcccEEeeecCccchHHHHH-HHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence            45667888999999988322122233 234557766666544332    2111           1    14556777777


Q ss_pred             eCCCCccCccC-cccccCCCCC
Q 022302          258 DLSYNYYIHSS-LEGLANLTNL  278 (299)
Q Consensus       258 ~L~~N~l~~~~-p~~l~~l~~L  278 (299)
                      .+.++...... -..+..++.|
T Consensus       368 ~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  368 SLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             hhhhhhccCcchHHHhcCCccc
Confidence            77776633222 1333444444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.51  E-value=0.055  Score=25.47  Aligned_cols=11  Identities=36%  Similarity=0.631  Sum_probs=3.4

Q ss_pred             CcEEECCCCCC
Q 022302          232 LKKLDLGSCGI  242 (299)
Q Consensus       232 L~~L~Ls~n~l  242 (299)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.16  E-value=0.12  Score=46.64  Aligned_cols=158  Identities=22%  Similarity=0.142  Sum_probs=97.5

Q ss_pred             CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCccchHhhc-cCCCCcEEeCCCCcCCCcc-hhhhhc
Q 022302          124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLN-TLTSLTTLILSDNSIEGSR-TKQGLA  200 (299)
Q Consensus       124 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~-p~~~~~  200 (299)
                      .+..|+.|+.+++...+.  ..+.+-..+.++|+.|-++.++ |+..--..++ +.+.|+.+++..+...... ..+.-.
T Consensus       292 ~c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~  369 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR  369 (483)
T ss_pred             hhhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence            467888888888755222  1222334567999999999886 4443333343 5788999999887644221 112235


Q ss_pred             CCCCCCEEECCCCcCCCCC-ccc-hhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCc--cCccccc
Q 022302          201 NLRYLQVLDLSGNFNITSG-SLT-RLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIH--SSLEGLA  273 (299)
Q Consensus       201 ~l~~L~~L~Ls~n~~~~~~-~~~-~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~--~~p~~l~  273 (299)
                      +++.|+.+.++++...... ... ...-..+..|+.+.+.++..+...   .+..+++|+.+++-+++-..  .+...-.
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~  449 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT  449 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence            6789999999987221111 111 122345678999999999865543   37778899999988775332  2333334


Q ss_pred             CCCCCCEEec
Q 022302          274 NLTNLQVLDL  283 (299)
Q Consensus       274 ~l~~L~~L~l  283 (299)
                      ++|+++...+
T Consensus       450 ~lp~i~v~a~  459 (483)
T KOG4341|consen  450 HLPNIKVHAY  459 (483)
T ss_pred             hCccceehhh
Confidence            6666665433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.08  E-value=0.047  Score=44.46  Aligned_cols=33  Identities=15%  Similarity=0.181  Sum_probs=14.2

Q ss_pred             ccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCC
Q 022302          128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN  164 (299)
Q Consensus       128 L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n  164 (299)
                      ++.+|-++..+....-+    -+.+++.++.|.+.++
T Consensus       103 IeaVDAsds~I~~eGle----~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLE----HLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHHHHH----HHhccchhhhheeccc
Confidence            44445544444433222    3344444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.42  E-value=0.055  Score=27.87  Aligned_cols=12  Identities=33%  Similarity=0.565  Sum_probs=4.0

Q ss_pred             CCCEEECCCCCC
Q 022302          155 QLKMLNLGDNFF  166 (299)
Q Consensus       155 ~L~~L~Ls~n~l  166 (299)
                      +|++|++++|++
T Consensus         3 ~L~~L~l~~n~i   14 (24)
T PF13516_consen    3 NLETLDLSNNQI   14 (24)
T ss_dssp             T-SEEE-TSSBE
T ss_pred             CCCEEEccCCcC
Confidence            334444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.34  E-value=0.21  Score=26.11  Aligned_cols=14  Identities=36%  Similarity=0.484  Sum_probs=7.8

Q ss_pred             CCCcEEeCCCCcCC
Q 022302          178 TSLTTLILSDNSIE  191 (299)
Q Consensus       178 ~~L~~L~L~~n~l~  191 (299)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.34  E-value=0.21  Score=26.11  Aligned_cols=14  Identities=36%  Similarity=0.484  Sum_probs=7.8

Q ss_pred             CCCcEEeCCCCcCC
Q 022302          178 TSLTTLILSDNSIE  191 (299)
Q Consensus       178 ~~L~~L~L~~n~l~  191 (299)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.72  E-value=0.0052  Score=51.07  Aligned_cols=85  Identities=15%  Similarity=0.139  Sum_probs=57.5

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  200 (299)
                      .+..+...+.||++.|++.....     .|.-++.|..|+++.|.+. ..|..+++...++.++++.|+.+ ..|. ++.
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~-----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~  108 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGK-----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQK  108 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhcc-----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccc
Confidence            34555667777777776654433     4555666777777777765 46677777777777777777776 4565 677


Q ss_pred             CCCCCCEEECCCC
Q 022302          201 NLRYLQVLDLSGN  213 (299)
Q Consensus       201 ~l~~L~~L~Ls~n  213 (299)
                      ..+.++.+++-+|
T Consensus       109 k~~~~k~~e~k~~  121 (326)
T KOG0473|consen  109 KEPHPKKNEQKKT  121 (326)
T ss_pred             ccCCcchhhhccC
Confidence            7777777777777

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.14  E-value=0.098  Score=42.67  Aligned_cols=82  Identities=30%  Similarity=0.308  Sum_probs=41.2

Q ss_pred             CCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc-CCCCCCEEECCCCcCCCCCccchhhhccCCCCcE
Q 022302          156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA-NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK  234 (299)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~  234 (299)
                      ++.+|-++..+..+.-+.+.++++++.|.+.+|.--+..--..++ -.++|+.|++++|.....+.+  ..+..+++|+.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL--~~L~~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL--ACLLKLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH--HHHHHhhhhHH
Confidence            455666666665555555666666666666666543322111222 235666666666621111111  34555566666


Q ss_pred             EECCC
Q 022302          235 LDLGS  239 (299)
Q Consensus       235 L~Ls~  239 (299)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            65544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.04  E-value=0.38  Score=25.12  Aligned_cols=16  Identities=25%  Similarity=0.420  Sum_probs=10.2

Q ss_pred             CCCCEEECCCCCCCcc
Q 022302          154 KQLKMLNLGDNFFNDS  169 (299)
Q Consensus       154 ~~L~~L~Ls~n~l~~~  169 (299)
                      ++|++|+|++|++...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566777777766643

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.04  E-value=0.38  Score=25.12  Aligned_cols=16  Identities=25%  Similarity=0.420  Sum_probs=10.2

Q ss_pred             CCCCEEECCCCCCCcc
Q 022302          154 KQLKMLNLGDNFFNDS  169 (299)
Q Consensus       154 ~~L~~L~Ls~n~l~~~  169 (299)
                      ++|++|+|++|++...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566777777766643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.88  E-value=0.016  Score=48.23  Aligned_cols=89  Identities=17%  Similarity=0.068  Sum_probs=55.4

Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-ccc
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLA  249 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~  249 (299)
                      ...+......+.||++.|++.. +.. .|+-++.+..++++.|.+.   ..| ..+.....++.+++..|.++..| ++.
T Consensus        35 v~ei~~~kr~tvld~~s~r~vn-~~~-n~s~~t~~~rl~~sknq~~---~~~-~d~~q~~e~~~~~~~~n~~~~~p~s~~  108 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSSNRLVN-LGK-NFSILTRLVRLDLSKNQIK---FLP-KDAKQQRETVNAASHKNNHSQQPKSQK  108 (326)
T ss_pred             hhhhhccceeeeehhhhhHHHh-hcc-chHHHHHHHHHhccHhhHh---hCh-hhHHHHHHHHHHHhhccchhhCCcccc
Confidence            3455666777777877777652 222 4566667777777777322   234 55566666677777766665543 466


Q ss_pred             CCCCCCEEeCCCCccC
Q 022302          250 KLKNLEALDLSYNYYI  265 (299)
Q Consensus       250 ~l~~L~~L~L~~N~l~  265 (299)
                      ..+.++.+++-.|.++
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            6677777777666655

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=80.10  E-value=1.9  Score=23.06  Aligned_cols=14  Identities=36%  Similarity=0.499  Sum_probs=7.5

Q ss_pred             CccEEeCCCCCCCC
Q 022302          127 ELQRLDLPGNWFTG  140 (299)
Q Consensus       127 ~L~~L~L~~n~l~~  140 (299)
                      +|++|+|++|.+..
T Consensus         3 ~L~~LdL~~N~i~~   16 (28)
T smart00368        3 SLRELDLSNNKLGD   16 (28)
T ss_pred             ccCEEECCCCCCCH
Confidence            45555555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	299
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		1e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		5e-04
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		5e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		6e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		6e-04

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 199 LANLRYLQVLDLSGNF--NITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEA 256
           L NL  +  L+LSGN   N+++       +A L ++K LDL S  IT +  LA L NL+ 
Sbjct: 87  LKNLTKITELELSGNPLKNVSA-------IAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 139
Query: 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           L L  N    +++  LA LTNLQ L + +NQ
Sbjct: 140 LYLDLNQI--TNISPLAGLTNLQYLSIGNNQ 168

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 199 LANLRYLQVLDLSGN----------------FNITSGSLTRL-GLANLTNLKKLDLGSCG 241
           L NL  L  L+LS N                 N +S  +T L  LANLT L++LD+ S  
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK 184
Query: 242 ITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           ++ I  LAKL NLE+L ++ N  I S +  L  LTNL  L L+ NQ
Sbjct: 185 VSDISVLAKLTNLESL-IATNNQI-SDITPLGILTNLDELSLNGNQ 228

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 29/157 (18%)
Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXX 184
           F+E  +L+L    FT ++    +  F +L  L++LNL     + S               
Sbjct: 395 FKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS--------------- 439
Query: 185 XXXXXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT-NLKKLDLGSCGIT 243
                      +  LA L+ L+ L+L GN +   GS+++  L  +  +L+ L L SC + 
Sbjct: 440 ----------NQHLLAGLQDLRHLNLQGN-SFQDGSISKTNLLQMVGSLEILILSSCNLL 488
Query: 244 TI--QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNL 278
           +I  Q    L+N+  LDLS+N     S++ L++L  L
Sbjct: 489 SIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL 525

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 199 LANLRYLQVLDLSGNF--NITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEA 256
           L NL  +  L+LSGN   N+++       +A L ++K LDL S  IT +  LA L NL+ 
Sbjct: 81  LKNLTKITELELSGNPLKNVSA-------IAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           L L  N    +++  LA LTNLQ L + + Q
Sbjct: 134 LYLDLNQI--TNISPLAGLTNLQYLSIGNAQ 162

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 198 GLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLKKLDLGSCGITTIQGLAKLKNLEA 256
            L+ L  LQ L  S N       +T L  LANLT L++LD+ S  ++ I  LAKL NLE+
Sbjct: 146 ALSGLTSLQQLSFSSN------QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 199
Query: 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           L ++ N  I S +  L  LTNL  L L+ NQ
Sbjct: 200 L-IATNNQI-SDITPLGILTNLDELSLNGNQ 228

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 198 GLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLKKLDLGSCGITTIQGLAKLKNLEA 256
            L+ L  LQ L  S N       +T L  LANLT L++LD+ S  ++ I  LAKL NLE+
Sbjct: 146 ALSGLTSLQQLSFSSN------QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 199
Query: 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           L ++ N  I S +  L  LTNL  L L+ NQ
Sbjct: 200 L-IATNNQI-SDITPLGILTNLDELSLNGNQ 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-25
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-15
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	4e-06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  140 bits (356), Expect = 1e-37
 Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 30/255 (11%)

Query: 35  ACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRV 94
             L  E   L+  K           D  +LP W       + + C  ++GV C     +V
Sbjct: 8   QSLYREIHQLISFKDVLP-------DKNLLPDWSS-----NKNPCT-FDGVTCR--DDKV 52

Query: 95  MQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK 154
             + L+     N    + S+ LL+++       L+ L L  +   G     +   F    
Sbjct: 53  TSIDLSSK-PLNVGFSAVSSSLLSLT------GLESLFLSNSHING-----SVSGFKCSA 100

Query: 155 QLKMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSG 212
            L  L+L  N  +  +     L + + L  L +S N+++      G   L  L+VLDLS 
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

Query: 213 NFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGL 272
           N    +  +  +       LK L +    I+    +++  NLE LD+S N    + +  L
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN-NFSTGIPFL 219

Query: 273 ANLTNLQVLDLSDNQ 287
            + + LQ LD+S N+
Sbjct: 220 GDCSALQHLDISGNK 234

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 4e-22
 Identities = 43/164 (26%), Positives = 62/164 (37%), Gaps = 15/164 (9%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ LD+  N F+           G    L+ L++  N  +      ++T T L  L +S 
Sbjct: 202 LEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT-TI- 245
           N   G         L+ LQ L L+ N   T G +          L  LDL        + 
Sbjct: 257 NQFVGP---IPPLPLKSLQYLSLAEN-KFT-GEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 246 QGLAKLKNLEALDLSYNYYIHSSL--EGLANLTNLQVLDLSDNQ 287
                   LE+L LS N      L  + L  +  L+VLDLS N+
Sbjct: 312 PFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNE 354

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.7 bits (231), Expect = 3e-21
 Identities = 55/191 (28%), Positives = 78/191 (40%), Gaps = 39/191 (20%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           LQ L L  N FTG   +      G+   L  L+L  N F  ++ P+  + + L +L LS 
Sbjct: 271 LQYLSLAENKFTGEIPD---FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGN---------FNITSGSLTRLGLAN---------- 228
           N+  G      L  +R L+VLDLS N             S SL  L L++          
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 229 -----LTNLKKLDLGSCGIT-TI-QGLAKLKNLEALDLSYNYYIHSSLEG-----LANLT 276
                   L++L L + G T  I   L+    L +L LS+N      L G     L +L+
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-----YLSGTIPSSLGSLS 442

Query: 277 NLQVLDLSDNQ 287
            L+ L L  N 
Sbjct: 443 KLRDLKLWLNM 453

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 28/183 (15%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
            L+ L L  N  TG           +   L  ++L +N     I  ++  L +L  L LS
Sbjct: 467 TLETLILDFNDLTGEIP----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNF------------------NITSGSLTRLGLAN 228
           +NS  G+   + L + R L  LDL+ N                   N  +G      + N
Sbjct: 523 NNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV-YIKN 580

Query: 229 LTNLKKLDLGSCGITTI----QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLS 284
               K+       +       + L +L      +++   Y   +     N  ++  LD+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 285 DNQ 287
            N 
Sbjct: 641 YNM 643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 5e-16
 Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 18/197 (9%)

Query: 106 NYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF 165
           N  +G     L N S      EL  L L  N+ +G   +    S GSL +L+ L L  N 
Sbjct: 404 NGFTGKIPPTLSNCS------ELVSLHLSFNYLSGTIPS----SLGSLSKLRDLKLWLNM 453

Query: 166 FNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLG 225
               I   L  + +L TLIL  N + G     GL+N   L  + LS N  + +G + +  
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNN-RL-TGEIPK-W 509

Query: 226 LANLTNLKKLDLGSCGIT-TI-QGLAKLKNLEALDLSYNYYIHSSL-EGLANLTNLQVLD 282
           +  L NL  L L +   +  I   L   ++L  LDL+ N   + ++   +   +     +
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAAN 568

Query: 283 LSDNQNLTTLGKPLNLR 299
               +    +      +
Sbjct: 569 FIAGKRYVYIKNDGMKK 585

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 46/191 (24%)

Query: 103 IKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLG 162
           I  N+ +G     + N  +     +          F GI      +    L      N+ 
Sbjct: 565 IAANFIAGKRYVYIKNDGMK----KECHGAGNLLEFQGIR----SEQLNRLSTRNPCNIT 616

Query: 163 DNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT 222
              +     P  +   S+  L +S N + G   K+ + ++ YL +L+L  N         
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHN--------- 666

Query: 223 RLGLANLTNLKKLDLGSCGITTI-QGLAKLKNLEALDLSYNYYIHSSLEG-----LANLT 276
                +++       GS     I   +  L+ L  LDLS N      L+G     ++ LT
Sbjct: 667 -----DIS-------GS-----IPDEVGDLRGLNILDLSSN-----KLDGRIPQAMSALT 704

Query: 277 NLQVLDLSDNQ 287
            L  +DLS+N 
Sbjct: 705 MLTEIDLSNNN 715

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  108 bits (270), Expect = 1e-26
 Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 20/177 (11%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
           F E  + +L     T         +   L  +  +   ++      +  +  L ++T L 
Sbjct: 20  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           L+ N +      + L NL+ L  L L  N  I   S     L +L  LK L L   GI+ 
Sbjct: 72  LNGNKL---TDIKPLTNLKNLGWLFLDEN-KIKDLS----SLKDLKKLKSLSLEHNGISD 123

Query: 245 IQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           I GL  L  LE+L L  N  I + +  L+ LT L  L L DNQ  ++  L     L+
Sbjct: 124 INGLVHLPQLESLYLGNN-KI-TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 178

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.4 bits (234), Expect = 8e-22
 Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 16/172 (9%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L ++      + L  L L  N    +       S   LK+LK L+L  N  +D  +  L 
Sbjct: 77  LTDIKPLTNLKNLGWLFLDENKIKDL------SSLKDLKKLKSLSLEHNGISD--INGLV 128

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
            L  L +L L +N I        L+ L  L  L L  N  I+        LA LT L+ L
Sbjct: 129 HLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDN-QISDIV----PLAGLTKLQNL 180

Query: 236 DLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            L    I+ ++ LA LKNL+ L+L     ++  +   +NL     +  +D  
Sbjct: 181 YLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.3 bits (213), Expect = 4e-19
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 14/146 (9%)

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215
           +              +   +         L   S+  + T      L  +  +  + + +
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNS-D 54

Query: 216 ITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANL 275
           I S      G+  L N+ KL L    +T I+ L  LKNL  L L  N  I   L  L +L
Sbjct: 55  IKSVQ----GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN-KI-KDLSSLKDL 108

Query: 276 TNLQVLDLSDNQ--NLTTLGKPLNLR 299
             L+ L L  N   ++  L     L 
Sbjct: 109 KKLKSLSLEHNGISDINGLVHLPQLE 134

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 1e-10
 Identities = 36/180 (20%), Positives = 57/180 (31%), Gaps = 11/180 (6%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
           +++      +L+ L L  N  T I           L +L  L+L DN  +D  +  L  L
Sbjct: 123 DINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD--IVPLAGL 174

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
           T L  L LS N I      + LA L+ L VL+L     +      +  L     +K  D 
Sbjct: 175 TKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLN 297
                  I      +          +    S      +T  +       +    L +   
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  104 bits (262), Expect = 2e-26
 Identities = 60/284 (21%), Positives = 100/284 (35%), Gaps = 63/284 (22%)

Query: 36  CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCD-DWEGVKCNATTR-- 92
           C   ++ ALL+IK           +   L SW+      ++DCC+  W GV C+  T+  
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLP-----TTDCCNRTWLGVLCDTDTQTY 50

Query: 93  RVMQLSLNETIKFNYSSGSGS--------ALLLNMSLFHP-------------FEELQRL 131
           RV  L L+                       L  + +                  +L  L
Sbjct: 51  RVNNLDLSG----LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 132 DLPGNWFTG-IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSI 190
            +     +G I      D    +K L  L+   N  + ++ P +++L +L  +    N I
Sbjct: 107 YITHTNVSGAIP-----DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 191 EGSRTKQGLANLRYL-QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT-TI-QG 247
            G+       +   L   + +S N    +G +     ANL NL  +DL    +       
Sbjct: 162 SGAIPDS-YGSFSKLFTSMTISRNR--LTGKIPP-TFANL-NLAFVDLSRNMLEGDASVL 216

Query: 248 LAKLKNLEALDLSYNYYIHSSLEG----LANLTNLQVLDLSDNQ 287
               KN + + L+ N     SL      +    NL  LDL +N+
Sbjct: 217 FGSDKNTQKIHLAKN-----SLAFDLGKVGLSKNLNGLDLRNNR 255

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 11/118 (9%)

Query: 148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207
            +F +L  L  ++L  N           +  +   + L+ NS+     K  +   + L  
Sbjct: 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNG 248

Query: 208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGS---CGITTIQGLAKLKNLEALDLSYN 262
           LDL  N  I  G+L + GL  L  L  L++     CG   I     L+  +    + N
Sbjct: 249 LDLRNN-RI-YGTLPQ-GLTQLKFLHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 128 LQRLDLPGNWFTG-IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
            Q++ L  N     +         G  K L  L+L +N    ++   L  L  L +L +S
Sbjct: 223 TQKIHLAKNSLAFDL------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSL 221
            N++ G   + G  NL+   V   + N  +    L
Sbjct: 277 FNNLCGEIPQGG--NLQRFDVSAYANNKCLCGSPL 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 1e-25
 Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 16/160 (10%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  L L  N    I          SL  L       N   D  +  +  +T L +L + +
Sbjct: 179 LYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGN 230

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG 247
           N I        LANL  L  L++  N  I+  +     + +LT LK L++GS  I+ I  
Sbjct: 231 NKITDL---SPLANLSQLTWLEIGTN-QISDIN----AVKDLTKLKMLNVGSNQISDISV 282

Query: 248 LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           L  L  L +L L+ N   +  +E +  LTNL  L LS N 
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 1e-25
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 33/192 (17%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ L+L GN  T I          +L +L  L +G N    + +  L  LT+L  L L++
Sbjct: 68  LEYLNLNGNQITDI------SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNE 119

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRL--------------GLANL 229
           ++I        LANL  +  L+L  N N++      ++T L               +ANL
Sbjct: 120 DNISDI---SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANL 176

Query: 230 TNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ-- 287
           T+L  L L    I  I  LA L +L       N    + +  +AN+T L  L + +N+  
Sbjct: 177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ--ITDITPVANMTRLNSLKIGNNKIT 234

Query: 288 NLTTLGKPLNLR 299
           +L+ L     L 
Sbjct: 235 DLSPLANLSQLT 246

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 99.5 bits (249), Expect = 2e-24
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 19/164 (11%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             E  R  L     T +       +   L+ +  L +         +  +  LT+L  L 
Sbjct: 21  LAEGIRAVLQKASVTDV------VTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLKKLDLGSCGIT 243
           L+ N I        L+NL  L  L +  N       +T +  L NLTNL++L L    I+
Sbjct: 73  LNGNQITDI---SPLSNLVKLTNLYIGTN------KITDISALQNLTNLRELYLNEDNIS 123

Query: 244 TIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            I  LA L  + +L+L  N+ + S L  L+N+T L  L +++++
Sbjct: 124 DISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESK 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.2 bits (230), Expect = 1e-21
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 20/168 (11%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
                 L       N  T I          ++ +L  L +G+N   D  L  L  L+ LT
Sbjct: 195 LASLTSLHYFTAYVNQITDI------TPVANMTRLNSLKIGNNKITD--LSPLANLSQLT 246

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG 241
            L +  N I        + +L  L++L++  N  I+  S     L NL+ L  L L +  
Sbjct: 247 WLEIGTNQISDIN---AVKDLTKLKMLNVGSN-QISDIS----VLNNLSQLNSLFLNNNQ 298

Query: 242 ITTI--QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           +     + +  L NL  L LS N+   + +  LA+L+ +   D ++  
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHI--TDIRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.5 bits (210), Expect = 7e-19
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 12/132 (9%)

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215
              L       N   +     L      +L   S+    T      L  +  L ++G   
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGE-K 55

Query: 216 ITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANL 275
           + S      G+  LTNL+ L+L    IT I  L+ L  L  L +  N    + +  L NL
Sbjct: 56  VASIQ----GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISALQNL 109

Query: 276 TNLQVLDLSDNQ 287
           TNL+ L L+++ 
Sbjct: 110 TNLRELYLNEDN 121

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 14/116 (12%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  L++  N  + I      ++   L +LKMLN+G N  +D  +  LN L+ L +L L++
Sbjct: 245 LTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT 243
           N +     +  +  L  L  L LS N +IT        LA+L+ +   D  +  I 
Sbjct: 297 NQLGNEDMEV-IGGLTNLTTLFLSQN-HITDIR----PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 205 LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYY 264
              L       I          A+L    +  L    +T +    +L+++  L ++    
Sbjct: 2   AATLATLPA-PINQIF----PDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKV 56

Query: 265 IHSSLEGLANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
             +S++G+  LTNL+ L+L+ NQ  +++ L   + L 
Sbjct: 57  --ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLT 91

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  100 bits (252), Expect = 4e-25
 Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 20/177 (11%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
           F E  + +L     T         +   L  +  +   ++      +  +  L ++T L 
Sbjct: 23  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           L+ N +      + LANL+ L  L L  N  +   S     L +L  LK L L   GI+ 
Sbjct: 75  LNGNKL---TDIKPLANLKNLGWLFLDEN-KVKDLS----SLKDLKKLKSLSLEHNGISD 126

Query: 245 IQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           I GL  L  LE+L L  N  I + +  L+ LT L  L L DNQ  ++  L     L+
Sbjct: 127 INGLVHLPQLESLYLGNN-KI-TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 97.8 bits (244), Expect = 5e-24
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 20/184 (10%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
           +    +    + ++    +    +           L  +  L L  N   D  +  L  L
Sbjct: 38  DAVTQNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTD--IKPLANL 89

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
            +L  L L +N +   +    L +L+ L+ L L  N  I+  +    GL +L  L+ L L
Sbjct: 90  KNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHN-GISDIN----GLVHLPQLESLYL 141

Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTTLGKP 295
           G+  IT I  L++L  L+ L L  N  I S +  LA LT LQ L LS N   +L  L   
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDN-QI-SDIVPLAGLTKLQNLYLSKNHISDLRALAGL 199

Query: 296 LNLR 299
            NL 
Sbjct: 200 KNLD 203

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 96.7 bits (241), Expect = 1e-23
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 14/150 (9%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
           +  +    NL      D      N L S+  +I +++ I+   + QG+  L  +  L L+
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 212 GNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEG 271
           GN  +T        LANL NL  L L    +  +  L  LK L++L L +N    S + G
Sbjct: 77  GN-KLTDIK----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI--SDING 129

Query: 272 LANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           L +L  L+ L L +N+  ++T L +   L 
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLD 159

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 90.1 bits (224), Expect = 3e-21
 Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 16/173 (9%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
           ++      + L  L L  N    +       S   LK+LK L+L  N  +D  +  L  L
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDL------SSLKDLKKLKSLSLEHNGISD--INGLVHL 133

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
             L +L L +N I        L+ L  L  L L  N  I+        LA LT L+ L L
Sbjct: 134 PQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDN-QISDIV----PLAGLTKLQNLYL 185

Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290
               I+ ++ LA LKNL+ L+L     ++  +   +NL     +  +D   +T
Sbjct: 186 SKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.2 bits (193), Expect = 5e-17
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
            +         L   S+  + T      L  +  +  + + +I S      G+  L N+ 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNS-DIKSVQ----GIQYLPNVT 71

Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           KL L    +T I+ LA LKNL  L L  N  +   L  L +L  L+ L L  N 
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDEN-KV-KDLSSLKDLKKLKSLSLEHNG 123

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.4 bits (178), Expect = 8e-15
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC 240
           +  I     I+                 +L    ++T           L ++ ++   + 
Sbjct: 5   SETITVPTPIK---QIFSDDAFAETIKDNLKKK-SVTDAV----TQNELNSIDQIIANNS 56

Query: 241 GITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            I ++QG+  L N+  L L+ N    + ++ LANL NL  L L +N+
Sbjct: 57  DIKSVQGIQYLPNVTKLFLNGNK--LTDIKPLANLKNLGWLFLDENK 101

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 14/137 (10%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
           +L+ L L  N  T I           L +L  L+L DN  +D  +  L  LT L  L LS
Sbjct: 135 QLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLS 186

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ 246
            N I      + LA L+ L VL+L       +  +     +NL     +      + T +
Sbjct: 187 KNHIS---DLRALAGLKNLDVLELFSQ-ECLNKPINH--QSNLVVPNTVKNTDGSLVTPE 240

Query: 247 GLAKLKNLEALDLSYNY 263
            ++   + E  ++ ++ 
Sbjct: 241 IISDDGDYEKPNVKWHL 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (251), Expect = 7e-25
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 20/184 (10%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
            +        L  L+L  N  T +          +L ++  L L  N   +  +  +  L
Sbjct: 55  TIEGVQYLNNLIGLELKDNQITDL------APLKNLTKITELELSGNPLKN--VSAIAGL 106

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
            S+ TL L+   I        LA L  LQVL L  N  IT+ S     LA LTNL+ L +
Sbjct: 107 QSIKTLDLTSTQI---TDVTPLAGLSNLQVLYLDLN-QITNIS----PLAGLTNLQYLSI 158

Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTTLGKP 295
           G+  ++ +  LA L  L  L    N    S +  LA+L NL  + L +NQ  +++ L   
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSPLANT 216

Query: 296 LNLR 299
            NL 
Sbjct: 217 SNLF 220

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.1 bits (237), Expect = 6e-23
 Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 20/177 (11%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
                ++    +  T         +   L  +  L+          +  +  L +L  L 
Sbjct: 18  LANAIKIAAGKSNVTDT------VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           L DN I        L NL  +  L+LSGN  + + S     +A L ++K LDL S  IT 
Sbjct: 70  LKDNQIT---DLAPLKNLTKITELELSGN-PLKNVS----AIAGLQSIKTLDLTSTQITD 121

Query: 245 IQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           +  LA L NL+ L L  N  I +++  LA LTNLQ L + + Q  +LT L     L 
Sbjct: 122 VTPLAGLSNLQVLYLDLN-QI-TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.7 bits (223), Expect = 6e-21
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 14/150 (9%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
           +L     +  G +   D        L  +TTL      +    T +G+  L  L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 212 GNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEG 271
            N  IT  +     L NLT + +L+L    +  +  +A L++++ LDL+      + +  
Sbjct: 72  DN-QITDLA----PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI--TDVTP 124

Query: 272 LANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           LA L+NLQVL L  NQ  N++ L    NL+
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQ 154

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.0 bits (203), Expect = 3e-18
 Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 16/173 (9%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
           N+S     + ++ LDL     T +           L  L++L L  N   +  +  L  L
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITN--ISPLAGL 150

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
           T+L  L + +  +        LANL  L  L    N  I+  S     LA+L NL ++ L
Sbjct: 151 TNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDN-KISDIS----PLASLPNLIEVHL 202

Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290
            +  I+ +  LA   NL  + L+     +  +    NL    V+       + 
Sbjct: 203 KNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
              L +   +    +++  + T    A+L  +  L   G   +T+      G+  L NL 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGT-GVTTIE----GVQYLNNLI 66

Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTT 291
            L+L    IT +  L  L  +  L+LS N     ++  +A L +++ LDL+  Q  ++T 
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 292 LGKPLNLR 299
           L    NL+
Sbjct: 125 LAGLSNLQ 132

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 184 ILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT 243
           I    +I           L     +    + N+T         A+L  +  L     G+T
Sbjct: 3   ITQPTAIN---VIFPDPALANAIKIAAGKS-NVTDTV----TQADLDGITTLSAFGTGVT 54

Query: 244 TIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           TI+G+  L NL  L+L  N    + L  L NLT +  L+LS N   N++ +    +++
Sbjct: 55  TIEGVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIK 110

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 16/173 (9%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           + +++       LQ L L  N  T I           L  L+ L++G+   +D  L  L 
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVSD--LTPLA 170

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
            L+ LTTL   DN I        LA+L  L  + L  N  I+  S     LAN +NL  +
Sbjct: 171 NLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNN-QISDVS----PLANTSNLFIV 222

Query: 236 DLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN 288
            L +  IT          +    +        +   +++       +L+ N  
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLT 275

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 97.0 bits (242), Expect = 2e-24
 Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 11/141 (7%)

Query: 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL 208
           +   +  L  + L +    D  L  +    ++  L +++           ++ L  L+ L
Sbjct: 39  TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERL 93

Query: 209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT--TIQGLAKLKNLEALDLSYNYYIH 266
            + G  ++TS  +    L+ LT+L  LD+         +  +  L  + ++DLSYN  I 
Sbjct: 94  RIMGK-DVTSDKIP--NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI- 149

Query: 267 SSLEGLANLTNLQVLDLSDNQ 287
           + +  L  L  L+ L++  + 
Sbjct: 150 TDIMPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 97.0 bits (242), Expect = 2e-24
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 15/161 (9%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  + L     T +              +K L + +    +     ++ L++L  L +  
Sbjct: 46  LTYITLANINVTDL------TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMG 97

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC-GITTIQ 246
             +   +    L+ L  L +LD+S +       LT   +  L  +  +DL     IT I 
Sbjct: 98  KDVTSDKIP-NLSGLTSLTLLDISHS-AHDDSILT--KINTLPKVNSIDLSYNGAITDIM 153

Query: 247 GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            L  L  L++L++ ++  +     G+ +   L  L      
Sbjct: 154 PLKTLPELKSLNIQFDG-V-HDYRGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 92.3 bits (230), Expect = 7e-23
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 11/138 (7%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              ++ L +     T        +    L  L+ L +         +P L+ LTSLT L 
Sbjct: 65  AHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           +S ++ + S     +  L  +  +DLS N  IT        L  L  LK L++   G+  
Sbjct: 119 ISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGVHD 173

Query: 245 IQGLAKLKNLEALDLSYN 262
            +G+     L  L     
Sbjct: 174 YRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.2 bits (214), Expect = 2e-20
 Identities = 30/143 (20%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
           + K      LG +   +        + SLT + L++ ++       G+     ++ L ++
Sbjct: 21  TFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTIN 74

Query: 212 GNFNITSGSLTRLGLANLTNLKKLDLGSCGITT--IQGLAKLKNLEALDLSYNYYIHSSL 269
              + T+ +     ++ L+NL++L +    +T+  I  L+ L +L  LD+S++ +  S L
Sbjct: 75  NI-HATNYN----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 270 EGLANLTNLQVLDLSDNQNLTTL 292
             +  L  +  +DLS N  +T +
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
             +    +L  +S          A +  L  + L+   N+T  +    G+    N+K L 
Sbjct: 22  FKAYLNGLLGQSST----ANITEAQMNSLTYITLANI-NVTDLT----GIEYAHNIKDLT 72

Query: 237 LGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296
           + +   T    ++ L NLE L +         +  L+ LT+L +LD+S + +  ++   +
Sbjct: 73  INNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 297 N 297
           N
Sbjct: 133 N 133

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (252), Expect = 4e-24
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 9/174 (5%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           ++ + FH F  LQ LDL     + +           L  LK L L  N F +      + 
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELP-----SGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
             SLT L +  N+         L NL  L+ LDLS + +I +     L L NL++L+ L+
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLN 382

Query: 237 LGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEG-LANLTNLQVLDLSDNQ 287
           L      +++     +   LE LDL++        +    NL  L+VL+LS + 
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 41/183 (22%), Positives = 62/183 (33%), Gaps = 11/183 (6%)

Query: 115 LLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL 174
           L L        E L+ LDL  +               +L  L+ LNL  N          
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCN--LQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
                L  L L+   ++    +    NL  L+VL+LS +  +     +      L  L+ 
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLD--ISSEQLFDGLPALQH 453

Query: 235 LDLGSCGITTIQG-----LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289
           L+L               L  L  LE L LS+            +L  +  +DLS N+ L
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR-L 512

Query: 290 TTL 292
           T+ 
Sbjct: 513 TSS 515

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.8 bits (226), Expect = 1e-20
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 11/171 (6%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSL 180
            F    +L+ LDL            A   F +L  LK+LNL  +  + S     + L +L
Sbjct: 395 AFKECPQLELLDLAFTRLKVK---DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 181 TTLILSDNSIEGSRTKQ--GLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLG 238
             L L  N       ++   L  L  L++L LS   +++S  + +    +L  +  +DL 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSS--IDQHAFTSLKMMNHVDLS 508

Query: 239 SCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
              +T+     L+ LK +  L+L+ N+        L  L+  + ++L  N 
Sbjct: 509 HNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.5 bits (225), Expect = 2e-20
 Identities = 46/185 (24%), Positives = 66/185 (35%), Gaps = 15/185 (8%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +  + F     L  LDL       I+E    D+F S  +L  L L  N         L+ 
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQIYWIHE----DTFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
             +L  L      I        L N + L+ L L  N +I+  S+          LK LD
Sbjct: 104 PKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSN-HIS--SIKLPKGFPTEKLKVLD 159

Query: 237 LGSCGITTIQ-----GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTT 291
             +  I  +       L +  NL  L+L+ N  I     G  +    Q L+    QNL  
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLS-LNLNGN-DIAGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 292 LGKPL 296
           + K L
Sbjct: 218 IFKGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 89.3 bits (222), Expect = 4e-20
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 10/166 (6%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
               + L+   N    I       +F  L  L  L+L              +   L TL+
Sbjct: 32  PNSTECLEFSFNVLPTIQNT----TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           L+ N +     +  L+  + L+ L       I+  S+  + L N   L+ L LGS  I++
Sbjct: 88  LTANPLIFM-AETALSGPKALKHLFFIQT-GIS--SIDFIPLHNQKTLESLYLGSNHISS 143

Query: 245 IQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN 288
           I+       + L+ LD   N   + S E +++L     L L+ N N
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 33/199 (16%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +  +     + L+ L       + I          + K L+ L LG N  +   LP    
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 177 LTSLTTLILSDNSIEGSRTK--QGLANLR----------------------YLQVLDLSG 212
              L  L   +N+I     +    L                            Q L+  G
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 213 NFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA----KLKNLEALDLSYNYYIHSS 268
                      L  + + +L            I           ++E+++L  +Y+ + S
Sbjct: 212 T-QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 269 LEGLANLTNLQVLDLSDNQ 287
                  + LQ LDL+   
Sbjct: 271 SNTFHCFSGLQELDLTATH 289

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           ++   F   + +  +DL  N  T        ++   LK +  LNL  N  +  +   L  
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSI----EALSHLKGI-YLNLASNHISIILPSLLPI 545

Query: 177 LTSLTTLILSDNSIEGS 193
           L+   T+ L  N ++ +
Sbjct: 546 LSQQRTINLRQNPLDCT 562

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (252), Expect = 5e-24
 Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 12/175 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L  + F  + +L  LD+  N  + +      +    L  LK+LNL  N  +         
Sbjct: 40  LPAANFTRYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
            T+LT L L  NSI+  +        + L  LDLS N  ++  S        L NL++L 
Sbjct: 96  CTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHN-GLS--STKLGTQVQLENLQELL 151

Query: 237 LGSCGITTIQ----GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           L +  I  ++     +    +L+ L+LS N     S      +  L  L L++ Q
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.1 bits (245), Expect = 4e-23
 Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 15/179 (8%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN- 175
           ++   F   + L+ L++  N   GI  N     F  L  LK L+L ++F +   L     
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSN----MFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 176 ---TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNL 232
                + L  L L+ N I         + L +L+VLDL  N  I    LT      L N+
Sbjct: 376 VSLAHSPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLN-EI-GQELTGQEWRGLENI 432

Query: 233 KKLDLGSCGITTIQG--LAKLKNLEALDLSYN--YYIHSSLEGLANLTNLQVLDLSDNQ 287
            ++ L       +     A + +L+ L L       + SS      L NL +LDLS+N 
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.1 bits (245), Expect = 4e-23
 Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN--DSILPYL 174
           L    +   E +  + L  N +  +  N    SF  +  L+ L L        DS     
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRN----SFALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS------GSLTRLGLAN 228
             L +LT L LS+N+I        L  L  L++LDL  N N+               L  
Sbjct: 477 QPLRNLTILDLSNNNIANI-NDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKG 534

Query: 229 LTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
           L++L  L+L S G   I       L  L+ +DL  N           N  +L+ L+L  N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 287 QNLTTL 292
             +T++
Sbjct: 595 L-ITSV 599

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.4 bits (243), Expect = 8e-23
 Identities = 47/182 (25%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +  ++F     L+ L L  ++ +            +   L +LNL  N  +       + 
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
           L  L  L L  N I    T Q    L  +  + LS N       LTR   A + +L++L 
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYL--QLTRNSFALVPSLQRLM 460

Query: 237 LGSCGITTIQG----LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
           L    +  +         L+NL  LDLS N   + + + L  L  L++LDL  N NL  L
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARL 519

Query: 293 GK 294
            K
Sbjct: 520 WK 521

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.0 bits (242), Expect = 9e-23
 Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 17/171 (9%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTLILS 186
           L  L+L  N  + I  +    +F  L  L++L+LG N     +       L ++  + LS
Sbjct: 383 LHILNLTKNKISKIESD----AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI- 245
            N      T+   A +  LQ L L     + +   +      L NL  LDL +  I  I 
Sbjct: 439 YNKYLQL-TRNSFALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 246 -QGLAKLKNLEALDLSYNY--------YIHSSLEGLANLTNLQVLDLSDNQ 287
              L  L+ LE LDL +N              +  L  L++L +L+L  N 
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 12/167 (7%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              +  L+L  N    +       +F    QL  L++G N  +         L  L  L 
Sbjct: 24  PTNITVLNLTHNQLRRLPAA----NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           L  N +    + +  A    L  L L  N +I    +         NL  LDL   G+++
Sbjct: 80  LQHNELSQL-SDKTFAFCTNLTELHLMSN-SIQ--KIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 245 I--QGLAKLKNLEALDLSYNY--YIHSSLEGLANLTNLQVLDLSDNQ 287
                  +L+NL+ L LS N    + S    +   ++L+ L+LS NQ
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.1 bits (237), Expect = 5e-22
 Identities = 41/174 (23%), Positives = 62/174 (35%), Gaps = 11/174 (6%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL-- 177
           + F   + L  LDL  N  +         +   L+ L+ L L +N         L+    
Sbjct: 115 NPFVKQKNLITLDLSHNGLSST----KLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
           +SL  L LS N I+          +  L  L L+      S +         T+++ L L
Sbjct: 171 SSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 238 GSCGITTIQGLA----KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            +  ++T         K  NL  LDLSYN       +  A L  L+   L  N 
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.4 bits (230), Expect = 4e-21
 Identities = 42/179 (23%), Positives = 65/179 (36%), Gaps = 15/179 (8%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L+   F     L  L L  N    I  N     F   K L  L+L  N  + + L     
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 177 LTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
           L +L  L+LS+N I+     +  +     L+ L+LS N  I     +      +  L  L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIK--EFSPGCFHAIGRLFGL 200

Query: 236 DLGSCGIT-----TIQGLAKLKNLEALDLSYN--YYIHSSLEGLANLTNLQVLDLSDNQ 287
            L +  +       +       ++  L LS +      ++       TNL +LDLS N 
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.7 bits (223), Expect = 3e-20
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 17/189 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRA-----YDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
            H    ++ L+L  ++        +       SF  LK L+ LN+ DN            
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 177 LTSLTTLILSDNSIEG----SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNL 232
           L +L  L LS++        + T   LA+   L +L+L+ N  I+   +     + L +L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKN-KIS--KIESDAFSWLGHL 407

Query: 233 KKLDLGSCGITTI---QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289
           + LDLG   I      Q    L+N+  + LSYN Y+  +    A + +LQ L L     L
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA-L 466

Query: 290 TTLGKPLNL 298
             +    + 
Sbjct: 467 KNVDSSPSP 475

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.3 bits (222), Expect = 4e-20
 Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 7/180 (3%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
             +      E LQ L L  N    +          +   LK L L  N   +      + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSE--ELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

Query: 177 LTSLTTLILSDNSIEGSRTK--QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
           +  L  L L++  +  S T+          ++ L LS +  +++ S T       TNL  
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTM 252

Query: 235 LDLGSCGITTI--QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
           LDL    +  +     A L  LE   L YN   H     L  L N++ L+L  +    ++
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 7e-20
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 13/163 (7%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
             +  D      T +              + +LNL  N             + LT+L + 
Sbjct: 5   SHEVADCSHLKLTQV-------PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ 246
            N+I      +    L  L+VL+L  N  ++   L+    A  TNL +L L S  I  I+
Sbjct: 58  FNTISKL-EPELCQKLPMLKVLNLQHN-ELS--QLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 247 --GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
                K KNL  LDLS+N    + L     L NLQ L LS+N+
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 48/198 (24%), Positives = 72/198 (36%), Gaps = 44/198 (22%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  LDL  N    +      DSF  L QL+   L  N         L+ L ++  L L  
Sbjct: 250 LTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 188 NSIEGSRTKQGL--------ANLRYLQVLDLSGNFNITS---------GSLTRLGLAN-- 228
           +  + S +   L          L+ L+ L++  N +I            +L  L L+N  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 229 ---------------LTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEG 271
                           + L  L+L    I+ I+    + L +LE LDL  N  I   L G
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN-EIGQELTG 423

Query: 272 --LANLTNLQVLDLSDNQ 287
                L N+  + LS N+
Sbjct: 424 QEWRGLENIFEIYLSYNK 441

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 21/200 (10%)

Query: 113 SALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-------- 164
             +  + S F P   L  LDL  N    I      D    L++L++L+L  N        
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANI----NDDMLEGLEKLEILDLQHNNLARLWKH 522

Query: 165 FFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224
                 + +L  L+ L  L L  N  +     +   +L  L+++DL  N N+ +  L   
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLN-NLNT--LPAS 578

Query: 225 GLANLTNLKKLDLGSCGITTIQGLA---KLKNLEALDLSYNYY--IHSSLEGLANLTNLQ 279
              N  +LK L+L    IT+++        +NL  LD+ +N +     S+    N  N  
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638

Query: 280 VLDLSDNQNLTTLGKPLNLR 299
             ++ +  +      P +  
Sbjct: 639 HTNIPELSSHYLCNTPPHYH 658

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 230 TNLKKLDLGSCGITTI-QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            + +  D     +T +   L    N+  L+L++N             + L  LD+  N 
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 98.1 bits (245), Expect = 3e-23
 Identities = 60/174 (34%), Positives = 79/174 (45%), Gaps = 21/174 (12%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  L L  N  T I      D   +L  L  L L  N  +D  +  L+ LTSL  L   +
Sbjct: 114 LTGLTLFNNQITDI------DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN 165

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG 247
              +       LANL  L+ LD+S N  ++  S     LA LTNL+ L   +  I+ I  
Sbjct: 166 QVTDLK----PLANLTTLERLDISSN-KVSDIS----VLAKLTNLESLIATNNQISDITP 216

Query: 248 LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           L  L NL+ L L+ N      +  LA+LTNL  LDL++NQ  NL  L     L 
Sbjct: 217 LGILTNLDELSLNGNQ--LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 268

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.0 bits (242), Expect = 7e-23
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 21/174 (12%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           LQ+L   GN  T +          +L  L+ L++  N  +D  +  L  LT+L +LI ++
Sbjct: 158 LQQLSF-GNQVTDL------KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 208

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG 247
           N I        L  L  L  L L+GN  +         LA+LTNL  LDL +  I+ +  
Sbjct: 209 NQISDI---TPLGILTNLDELSLNGN-QLKDIG----TLASLTNLTDLDLANNQISNLAP 260

Query: 248 LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           L+ L  L  L L  N    S++  LA LT L  L+L++NQ  +++ +    NL 
Sbjct: 261 LSGLTKLTELKLGANQI--SNISPLAGLTALTNLELNENQLEDISPISNLKNLT 312

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.4 bits (238), Expect = 2e-22
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 21/177 (11%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
            +++  L         I      D    L  L  +N  +N   D  +  L  LT L  ++
Sbjct: 45  LDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDIL 96

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           +++N I        LANL  L  L L  N  IT        L NLTNL +L+L S  I+ 
Sbjct: 97  MNNNQIADI---TPLANLTNLTGLTLFNN-QITDID----PLKNLTNLNRLELSSNTISD 148

Query: 245 IQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           I  L+ L +L+ L         + L+ LANLT L+ LD+S N+  +++ L K  NL 
Sbjct: 149 ISALSGLTSLQQLSFGNQ---VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 202

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.8 bits (226), Expect = 1e-20
 Identities = 48/176 (27%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             E  +  L     T         S   L Q+  L           +  +  L +LT + 
Sbjct: 23  LAEKMKTVLGKTNVTDT------VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
            S+N +        L NL  L  + ++ N  I   +     LANLTNL  L L +  IT 
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILMNNN-QIADIT----PLANLTNLTGLTLFNNQITD 126

Query: 245 IQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ-NLTTLGKPLNLR 299
           I  L  L NL  L+LS N    S +  L+ LT+LQ L   +   +L  L     L 
Sbjct: 127 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 180

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.5 bits (220), Expect = 7e-20
 Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 14/153 (9%)

Query: 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL 208
           +  +L +     LG     D        L  +TTL      I+   +  G+  L  L  +
Sbjct: 19  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSS 268
           + S N  +T  +     L NLT L  + + +  I  I  LA L NL  L L  N    + 
Sbjct: 74  NFSNN-QLTDIT----PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI--TD 126

Query: 269 LEGLANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           ++ L NLTNL  L+LS N   +++ L    +L+
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 159

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 16/163 (9%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  L L  N  + I           L  L  L L +N   D  +  ++ L +LT L L  
Sbjct: 267 LTELKLGANQISNI------SPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 318

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG 247
           N+I        +++L  LQ L    N  ++  S     LANLTN+  L  G   I+ +  
Sbjct: 319 NNISDI---SPVSSLTKLQRLFFYNN-KVSDVS----SLANLTNINWLSAGHNQISDLTP 370

Query: 248 LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290
           LA L  +  L L+   + ++ +   AN++    +       + 
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 16/151 (10%)

Query: 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDL 210
           G L    +    D   N   +     L      +L   ++  + +     +L  +  L  
Sbjct: 1   GPLGSATITQ--DTPINQ--IFTDTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQA 53

Query: 211 SGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLE 270
                I S      G+  L NL +++  +  +T I  L  L  L  + ++ N    + + 
Sbjct: 54  DRL-GIKSID----GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ--IADIT 106

Query: 271 GLANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
            LANLTNL  L L +NQ  ++  L    NL 
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDPLKNLTNLN 137

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  L L  N  + I          SL +L+ L   +N  +D  +  L  LT++  L    
Sbjct: 311 LTYLTLYFNNISDI------SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG 247
           N I        LANL  +  L L+     T+  +      ++ N  K   G+  +     
Sbjct: 363 NQISDLT---PLANLTRITQLGLNDQ-AWTNAPVNYKANVSIPNTVKNVTGA--LIAPAT 416

Query: 248 LAKLKNLEALDLSYN 262
           ++   +    D+++N
Sbjct: 417 ISDGGSYTEPDITWN 431

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.3 bits (235), Expect = 1e-22
 Identities = 44/174 (25%), Positives = 63/174 (36%), Gaps = 16/174 (9%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP--YLNTLTSLTT 182
                RL+L  N    +        F  L QL  L+L  N  +            TSL  
Sbjct: 27  PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGL-ANLTNLKKLDLGSCG 241
           L LS N +    +      L  L+ LD   + N+    ++   +  +L NL  LD+    
Sbjct: 83  LDLSFNGVITMSS--NFLGLEQLEHLDFQHS-NLK--QMSEFSVFLSLRNLIYLDISHTH 137

Query: 242 ITTIQG--LAKLKNLEALDLSYNYYIHSSLEG-LANLTNLQVLDLSDNQNLTTL 292
                      L +LE L ++ N +  + L      L NL  LDLS  Q L  L
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQL 190

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 6e-21
 Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 13/171 (7%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTS 179
           F   E+L+ LD   +    + E      F SL+ L  L++     +  +      N L+S
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHT--HTRVAFNGIFNGLSS 151

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS 239
           L  L ++ NS + +        LR L  LDLS    +    L+     +L++L+ L++  
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLE--QLSPTAFNSLSSLQVLNMSH 208

Query: 240 CGITTIQGLA--KLKNLEALDLSYNYYIHSSLEGLANL-TNLQVLDLSDNQ 287
               ++       L +L+ LD S N+ + S  + L +  ++L  L+L+ N 
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
              +S T L L  N ++ S        L  L  L LS N  ++            T+LK 
Sbjct: 25  GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKY 82

Query: 235 LDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTTL 292
           LDL   G+ T+      L+ LE LD  ++     S   +  +L NL  LD+S        
Sbjct: 83  LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVA 141

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 33/149 (22%), Positives = 52/149 (34%), Gaps = 34/149 (22%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
               +F+    L+ L + GN                    +      + F +        
Sbjct: 141 AFNGIFNGLSSLEVLKMAGN-----------------SFQENFL--PDIFTE-------- 173

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
           L +LT L LS   +E   +     +L  LQVL++S N N    SL       L +L+ LD
Sbjct: 174 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN-NFF--SLDTFPYKCLNSLQVLD 229

Query: 237 LGSCGITTIQGLA---KLKNLEALDLSYN 262
                I T +         +L  L+L+ N
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.1 bits (232), Expect = 3e-22
 Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 22/183 (12%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           SL      ++ LDL GN  + I             +L++LNL  N   +     L +L++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS 239
           L TL L++N +      Q L     ++ L  + N      +++R+  +     K + L +
Sbjct: 82  LRTLDLNNNYV------QELLVGPSIETLHAANN------NISRVSCSRGQGKKNIYLAN 129

Query: 240 CGITTIQGLA--KLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTTLGKPL 296
             IT ++ L       ++ LDL  N     +   L A+   L+ L+L  N  +  +   +
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV 188

Query: 297 NLR 299
              
Sbjct: 189 VFA 191

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.7 bits (223), Expect = 6e-21
 Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 27/192 (14%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYL- 174
           ++ +   PF +L+ L+L  N               SL  L+ L+L +N+  +  + P + 
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYET------LDLESLSTLRTLDLNNNYVQELLVGPSIE 102

Query: 175 --------------NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS 220
                         +       + L++N I              +Q LDL  N  I + +
Sbjct: 103 TLHAANNNISRVSCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLN-EIDTVN 160

Query: 221 LTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV 280
              L  A+   L+ L+L    I  ++G      L+ LDLS N  +        +   +  
Sbjct: 161 FAEL-AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTW 218

Query: 281 LDLSDNQNLTTL 292
           + L +N+ L  +
Sbjct: 219 ISLRNNK-LVLI 229

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.3 bits (222), Expect = 8e-21
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 17/175 (9%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSL 180
           +       +   +  +       +       S   +K L+L  N  +      L   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC 240
             L LS N +  +     L +L  L+ LDL+ N  +         L    +++ L   + 
Sbjct: 61  ELLNLSSNVLYETLD---LESLSTLRTLDLNNN-YVQE-------LLVGPSIETLHAANN 109

Query: 241 GITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295
            I+ +   ++ +  + + L+ N             + +Q LDL  N+ + T+   
Sbjct: 110 NISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFA 162

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 1e-19
 Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 16/162 (9%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           ++ L    N  + +       S    +  K + L +N             + +  L L  
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLKKLDLGSCGITTIQ 246
           N I+     +  A+   L+ L+L  N       +  + G      LK LDL S  +  + 
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYN------FIYDVKGQVVFAKLKTLDLSSNKLAFMG 207

Query: 247 -GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
                   +  + L  N  +    + L    NL+  DL  N 
Sbjct: 208 PEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 31/180 (17%), Positives = 47/180 (26%), Gaps = 15/180 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
                 +Q LDL  N    +      +   S   L+ LNL  NF     +        L 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL--GLANLTNLKKLDLGS 239
           TL LS N +  +       +   +  + L  N       L  +   L    NL+  DL  
Sbjct: 195 TLDLSSNKL--AFMGPEFQSAAGVTWISLRNN------KLVLIEKALRFSQNLEHFDLRG 246

Query: 240 CGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLNLR 299
            G             + +       +            +  L          L  P   R
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 14/139 (10%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ LDL  N    +        F S   +  ++L +N     I   L    +L    L  
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG 247
           N       +   +  + +Q +       +T  +     +  L +         G    + 
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY--------GAYCCED 298

Query: 248 LAKLKNLEALDLSYNYYIH 266
           L        + L ++++ H
Sbjct: 299 LPAPFADRLIALGHHHHHH 317

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 5e-22
 Identities = 52/188 (27%), Positives = 72/188 (38%), Gaps = 33/188 (17%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTT 182
               + L+L  N    I  N    SF  L+ L++L L  N  +   +     N L +L T
Sbjct: 63  STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRN--HIRTIEIGAFNGLANLNT 116

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---------GSLTRLGL------- 226
           L L DN +  +        L  L+ L L  N  I S          SL RL L       
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 227 -------ANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ 279
                    L+NL+ L+L  C +  I  L  L  L+ LDLS N+           L +LQ
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 280 VLDLSDNQ 287
            L +  +Q
Sbjct: 235 KLWMIQSQ 242

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.3 bits (227), Expect = 6e-21
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 13/168 (7%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSL 180
           F    +L+ L L  N    I       +F  +  L+ L+LG+      I       L++L
Sbjct: 132 FVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC 240
             L L+  ++   R    L  L  L  LDLSGN ++++  +       L +L+KL +   
Sbjct: 188 RYLNLAMCNL---REIPNLTPLIKLDELDLSGN-HLSA--IRPGSFQGLMHLQKLWMIQS 241

Query: 241 GITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
            I  I+      L++L  ++L++N       +    L +L+ + L  N
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.3 bits (214), Expect = 3e-19
 Identities = 46/200 (23%), Positives = 72/200 (36%), Gaps = 32/200 (16%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           + ++ F     L+ L L  N    I       +F  L  L  L L DN    + +P    
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHIRTI----EIGAFNGLANLNTLELFDNRL--TTIPNGAF 132

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---------GSLTRLG 225
             L+ L  L L +N IE S        +  L+ LDL     ++           +L  L 
Sbjct: 133 VYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 226 L-----------ANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGL 272
           L             L  L +LDL    ++ I+      L +L+ L +  +          
Sbjct: 192 LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 273 ANLTNLQVLDLSDNQNLTTL 292
            NL +L  ++L+ N  LT L
Sbjct: 252 DNLQSLVEINLAHNN-LTLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
           T+   L L +N I+  +      +LR+L++L LS N +I   ++       L NL  L+L
Sbjct: 64  TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRN-HIR--TIEIGAFNGLANLNTLEL 119

Query: 238 GSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
               +TTI       L  L+ L L  N            + +L+ LDL + + L+ +
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 7e-22
 Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 15/175 (8%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           +    F     L+ L L  N    I       +F  L  L  L L DN+   +++P    
Sbjct: 90  IQADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLNTLELFDNWL--TVIPSGAF 143

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
             L+ L  L L +N IE S        +  L  LDL     +    ++      L NLK 
Sbjct: 144 EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEY--ISEGAFEGLFNLKY 200

Query: 235 LDLGSCGITTIQGLAKLKNLEALDLSYNY--YIHSSLEGLANLTNLQVLDLSDNQ 287
           L+LG C I  +  L  L  LE L++S N+   I         L++L+ L + ++Q
Sbjct: 201 LNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGS--FHGLSSLKKLWVMNSQ 253

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.7 bits (228), Expect = 4e-21
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 13/169 (7%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTS 179
            F    +L+ L L  N    I       +F  +  L  L+LG+    + I       L +
Sbjct: 142 AFEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS 239
           L  L L   +I   +    L  L  L+ L++SGN +     +       L++LKKL + +
Sbjct: 198 LKYLNLGMCNI---KDMPNLTPLVGLEELEMSGN-HFPE--IRPGSFHGLSSLKKLWVMN 251

Query: 240 CGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
             ++ I+      L +L  L+L++N       +    L  L  L L  N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
           ++   L L +N+I+  +      +L +L+VL L  N +I    +       L +L  L+L
Sbjct: 75  SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRN-SIR--QIEVGAFNGLASLNTLEL 130

Query: 238 GSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
               +T I       L  L  L L  N            + +L  LDL + + L  +
Sbjct: 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.6 bits (233), Expect = 1e-21
 Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 8/179 (4%)

Query: 111 SGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170
           S +  ++  + F   EELQ LD   +    + E     +F SL++L  L++         
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDISYTNTKIDF 440

Query: 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT 230
                 LTSL TL ++ NS + +      AN   L  LDLS    +    ++      L 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLE--QISWGVFDTLH 497

Query: 231 NLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            L+ L++    +  +      +L +L  LD S+N    S         +L   +L++N 
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 89.3 bits (222), Expect = 4e-20
 Identities = 49/181 (27%), Positives = 70/181 (38%), Gaps = 14/181 (7%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           F  F ELQ LDL       I +     ++  L  L  L L  N          + LTSL 
Sbjct: 52  FSNFSELQWLDLSRCEIETIED----KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG 241
            L+  +  +    +   +  L  L+ L+++ N  I S  L     +NLTNL  +DL    
Sbjct: 108 NLVAVETKLASLES-FPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNY 164

Query: 242 ITTI-----QGLAKLK-NLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295
           I TI     Q L +      +LD+S N  I    +       L  L L  N N + + K 
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223

Query: 296 L 296
            
Sbjct: 224 C 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.9 bits (221), Expect = 5e-20
 Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           +H    L  L L GN            SF  L  L+ L   +          +  L +L 
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGLANLTNLKKLDLGS 239
            L ++ N I   +     +NL  L  +DLS N+   IT   L  L   N      LD+  
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR-ENPQVNLSLDMSL 190

Query: 240 CGITTIQGLA-KLKNLEALDLSYNYYIHSSLEG-LANLTNLQVLDLSDNQ 287
             I  IQ  A +   L  L L  N+   + ++  L NL  L V  L   +
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 15/170 (8%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
               + +DL  N    +       SF +  +L+ L+L             + L  L+ LI
Sbjct: 31  PSSTKNIDLSFNPLKILKSY----SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           L+ N I+   +    + L  L+ L       +   SL    +  L  LKKL++    I +
Sbjct: 87  LTGNPIQSF-SPGSFSGLTSLENLVAVET-KLA--SLESFPIGQLITLKKLNVAHNFIHS 142

Query: 245 IQ---GLAKLKNLEALDLSYN---YYIHSSLEGLANLT-NLQVLDLSDNQ 287
            +     + L NL  +DLSYN       + L+ L         LD+S N 
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 40/201 (19%), Positives = 63/201 (31%), Gaps = 37/201 (18%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
            ++  FH    +  + L G     +      +      + + L++          P L+ 
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKYL------EDVPKHFKWQSLSIIRCQLKQ--FPTLD- 326

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGL-------- 226
           L  L +L L+ N    S  K  L +L YL   DLS N        S + LG         
Sbjct: 327 LPFLKSLTLTMNKGSISFKKVALPSLSYL---DLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 227 ------------ANLTNLKKLDLGSCGITTI---QGLAKLKNLEALDLSYNYYIHSSLEG 271
                         L  L+ LD     +  +        L+ L  LD+SY          
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 272 LANLTNLQVLDLSDNQNLTTL 292
              LT+L  L ++ N      
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 42/207 (20%), Positives = 63/207 (30%), Gaps = 41/207 (19%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLN 175
            +   F     L+ L         +         G L  LK LN+  NF +   LP Y +
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 176 TLTSLTTLILSDNSIEGSRTK--QGLANLRY-LQVLDLSGNF------------------ 214
            LT+L  + LS N I+       Q L         LD+S N                   
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 215 ---NITSGSLTRLGLANLTNLKKLDLGSCGIT-----------TIQGLAKLKNLEALDLS 260
              N  S ++ +  L NL  L    L                  ++GL  +   E   L+
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE-FRLT 269

Query: 261 YNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           Y       +     L N+  + L+   
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVS 296

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 19/181 (10%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLT 178
            L    +    LD+  N    I +     +F  +K L  L L  NF + +I+   L  L 
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQ----AFQGIK-LHELTLRGNFNSSNIMKTCLQNLA 229

Query: 179 SLTTLILSDNSIEGSR-----TKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
            L    L     +  R         +  L  + + +    +     S   +    L N+ 
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT-NDFSDDIVKFHCLANVS 288

Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGL--ANLTNLQVLDLSDNQNLTT 291
            + L    I  ++ + K    ++L +         L+     +L  L+ L L+ N+   +
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRC-----QLKQFPTLDLPFLKSLTLTMNKGSIS 343

Query: 292 L 292
            
Sbjct: 344 F 344

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 12/173 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
               +F     L  L + GN F     +   + F +   L  L+L             +T
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
           L  L  L +S N++           L  L  LD S N  I +     +      +L   +
Sbjct: 496 LHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFN-RIET--SKGILQHFPKSLAFFN 551

Query: 237 LGSCGITTIQGLAKLKNLEALDLSYNYYIHSSL---EGLANLTNLQVLDLSDN 286
           L +  +  I    K      +     + ++           +    VLD +++
Sbjct: 552 LTNNSVACICEHQKFLQW--VKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNS 602

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.8 bits (233), Expect = 2e-21
 Identities = 34/203 (16%), Positives = 60/203 (29%), Gaps = 30/203 (14%)

Query: 122 FHPFEELQRLDLPGNWFTGI---------------YENRAYDSFGSLKQLKMLNLGDNFF 166
                +LQ +    + FT                        S+ +LK L  + L +   
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 167 NDSILPYLNTLTSLTTLILSDNSIEG--------SRTKQGLANLRYLQVLDLSGNFNITS 218
              +  +L  L  L +L ++ N            +R          +Q+  +  N N+  
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE 562

Query: 219 GSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNY--YIHSSLEGLANLT 276
                  L  +  L  LD     +  ++       L  L L YN    I       A   
Sbjct: 563 -FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF--CAFTD 619

Query: 277 NLQVLDLSDNQNLTTLGKPLNLR 299
            ++ L  S N+ L  +    N +
Sbjct: 620 QVEGLGFSHNK-LKYIPNIFNAK 641

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.4 bits (232), Expect = 2e-21
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 18/176 (10%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L  LD   N    +      ++FG+  +L  L L  N   +    +      +  L  S 
Sbjct: 575 LGLLDCVHNKVRHL------EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGLANLTNLKKLDLGSCGITTI 245
           N ++         ++  +  +D S N   +        +      N   + L    I   
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 246 --QGLAKLKNLEALDLSYNY-------YIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
             +  A    +  + LS N         +        N   L  +DL  N+ LT+L
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSL 743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.8 bits (220), Expect = 8e-20
 Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 17/179 (9%)

Query: 128 LQRLDLPGNWFTGIYENR-AYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
           +  +D   N       N               + L  N           T + ++T+ILS
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 187 DNSIE------GSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC 240
           +N +                N   L  +DL  N  +TS S        L  L  +D+   
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD-FRATTLPYLSNMDVSYN 763

Query: 241 GITTI-QGLAKLKNLEALDLSYNYYIHSSL------EGLANLTNLQVLDLSDNQNLTTL 292
             ++          L+A  + +      +        G+    +L  L +  N  +  +
Sbjct: 764 CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.9 bits (210), Expect = 2e-18
 Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 19/183 (10%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFF-----NDSILPYL 174
                 ++++ L    N    I       +  S+  +  ++   N       N S     
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYI---PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGLANL 229
               + +T+ LS N I+   T+   A    +  + LS N  +TS              N 
Sbjct: 670 YKGINASTVTLSYNEIQKFPTEL-FATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNT 727

Query: 230 TNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
             L  +DL    +T++        L  L  +D+SYN    S      N + L+   +   
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQ 786

Query: 287 QNL 289
           ++ 
Sbjct: 787 RDA 789

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.0 bits (205), Expect = 7e-18
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 14/178 (7%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAY---DSFGSLKQLKMLNLGDNFFNDSILP---Y 173
            LF     +  + L  N  T I EN       ++ +   L  ++L  N      L     
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFR 748

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL---GLANLT 230
             TL  L+ + +S N    S       N   L+   +    +     + R    G+    
Sbjct: 749 ATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 231 NLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN 288
           +L +L +GS  I  +        L  LD++ N  I   +  +       +  L  ++ 
Sbjct: 807 SLIQLQIGSNDIRKVD-EKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.2 bits (203), Expect = 1e-17
 Identities = 31/182 (17%), Positives = 52/182 (28%), Gaps = 34/182 (18%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-------SILPYLNTLTSL 180
              + L  N             F +   +  + L +N                      L
Sbjct: 675 ASTVTLSYNEIQKFPTE----LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL--GLANLTNLKKLDL- 237
           TT+ L  N +           L YL  +D+S N        +       N + LK   + 
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN------CFSSFPTQPLNSSQLKAFGIR 784

Query: 238 -----GSCGITTI--QGLAKLKNLEALDLSYNY--YIHSSLEGLANLTNLQVLDLSDNQN 288
                    I      G+    +L  L +  N    +   L        L +LD++DN N
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL-----TPQLYILDIADNPN 839

Query: 289 LT 290
           ++
Sbjct: 840 IS 841

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.7 bits (186), Expect = 2e-15
 Identities = 34/190 (17%), Positives = 60/190 (31%), Gaps = 32/190 (16%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           +  L L G    G       D+ G L +LK+L+ G +    S   + +   +        
Sbjct: 325 VTGLSLAGFGAKGR----VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGN--------FNITSGSLTRL--------------- 224
           + I     K  L   + L + DL  +          I   S   L               
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 225 --GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLD 282
              +  LT L+ +   +   T         + E  +  Y     +     +NL +L  ++
Sbjct: 441 SKAIQRLTKLQIIYFANSPFT---YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 283 LSDNQNLTTL 292
           L +  N+T L
Sbjct: 498 LYNCPNMTQL 507

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 5e-12
 Identities = 23/157 (14%), Positives = 45/157 (28%), Gaps = 10/157 (6%)

Query: 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL 208
              +  ++  L+L        +   +  LT L  L    +S   S     L     L   
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS---GRLFGDEELTPD 374

Query: 209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYY---- 264
                 +       ++ L     L   DL    I     +  +K    + L         
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 265 --IHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLNLR 299
             I    + +  LT LQ++  +++   T     ++  
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWE 470

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.9 bits (231), Expect = 2e-21
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 14/180 (7%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           LN   F  F  L+ L+L  N  + +       +F +L  L+ L L  N     ++P    
Sbjct: 47  LNQDEFASFPHLEELELNENIVSAV----EPGAFNNLFNLRTLGLRSNRL--KLIPLGVF 100

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
             L++LT L +S+N I          +L  L+ L++  N ++    ++    + L +L++
Sbjct: 101 TGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDN-DLV--YISHRAFSGLNSLEQ 156

Query: 235 LDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
           L L  C +T+I    L+ L  L  L L +             L  L+VL++S    L T+
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.8 bits (223), Expect = 2e-20
 Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 14/170 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-NTLTSL 180
           F+    L+ L L  N    I        F  L  L  L++ +N     +L Y+   L +L
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPL----GVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNL 130

Query: 181 TTLILSDNSIEGSRTKQG-LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS 239
            +L + DN +          + L  L+ L L    N+TS  +    L++L  L  L L  
Sbjct: 131 KSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKC-NLTS--IPTEALSHLHGLIVLRLRH 185

Query: 240 CGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
             I  I+     +L  L+ L++S+  Y+ +         NL  L ++   
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.2 bits (219), Expect = 7e-20
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 10/173 (5%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +          L  L L       I +     SF  L +LK+L +    + D++ P    
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
             +LT+L ++  ++  +     + +L YL+ L+LS N  I++  +    L  L  L+++ 
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN-PIST--IEGSMLHELLRLQEIQ 278

Query: 237 LGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           L    +  ++      L  L  L++S N           ++ NL+ L L  N 
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.3 bits (214), Expect = 4e-19
 Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 17/181 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LN 175
           ++   F     L++L L     T I      ++   L  L +L L     N +I  Y   
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSI----PTEALSHLHGLIVLRLRHLNIN-AIRDYSFK 197

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
            L  L  L +S      + T   L  L  L  L ++   N+T+  +  L + +L  L+ L
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHC-NLTA--VPYLAVRHLVYLRFL 253

Query: 236 DLGSCGITTIQG--LAKLKNLEALDLSYNY--YIHSSLEGLANLTNLQVLDLSDNQNLTT 291
           +L    I+TI+G  L +L  L+ + L       +         L  L+VL++S NQ LTT
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA--FRGLNYLRVLNVSGNQ-LTT 310

Query: 292 L 292
           L
Sbjct: 311 L 311

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.3 bits (188), Expect = 8e-16
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 7/139 (5%)

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215
            ++L+LG N           +   L  L L++N +  +       NL  L+ L L  N  
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN-R 91

Query: 216 ITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLA 273
           +    +       L+NL KLD+    I  +       L NL++L++  N  ++ S    +
Sbjct: 92  LK--LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 274 NLTNLQVLDLSDNQNLTTL 292
            L +L+ L L    NLT++
Sbjct: 150 GLNSLEQLTLEKC-NLTSI 167

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 11/119 (9%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
           T    L L  N I+ +  +   A+  +L+ L+L+ N  ++  ++      NL NL+ L L
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNEN-IVS--AVEPGAFNNLFNLRTLGL 87

Query: 238 GSCGITTIQG--LAKLKNLEALDLSYNY--YIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
            S  +  I       L NL  LD+S N    +   +    +L NL+ L++ DN  L  +
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM--FQDLYNLKSLEVGDND-LVYI 143

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.2 bits (232), Expect = 2e-21
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 13/171 (7%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           F   E+L+ LD   +    + E   +  F SL+ L  L++       +     N L+SL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG 241
            L ++ NS + +        LR L  LDLS    +    L+     +L++L+ L++    
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLE--QLSPTAFNSLSSLQVLNMSHNN 505

Query: 242 ITTIQG--LAKLKNLEALDLSYN---YYIHSSLEGLANLTNLQVLDLSDNQ 287
             ++       L +L+ LD S N         L+     ++L  L+L+ N 
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF--PSSLAFLNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 15/167 (8%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
            + LDL  N    +       SF S  +L++L+L              +L+ L+TLIL+ 
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ- 246
           N I+        + L  LQ L      N+   SL    + +L  LK+L++    I + + 
Sbjct: 86  NPIQSL-ALGAFSGLSSLQKLVAVET-NLA--SLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 247 --GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV----LDLSDNQ 287
               + L NLE LDLS N         L  L  + +    LDLS N 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.2 bits (214), Expect = 5e-19
 Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 9/175 (5%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
             N         L+ LDL  N  +         S      LK L+L  N    ++     
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCS--QSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
            L  L  L    ++++         +LR L  LD+S   +             L++L+ L
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTR--VAFNGIFNGLSSLEVL 450

Query: 236 DLGSCGITTI---QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            +               +L+NL  LDLS       S     +L++LQVL++S N 
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 13/176 (7%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
             +     L  L L GN    +       +F  L  L+ L   +          +  L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK----KL 235
           L  L ++ N I+  +  +  +NL  L+ LDLS N  I   S+    L  L  +      L
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQ--SIYCTDLRVLHQMPLLNLSL 182

Query: 236 DLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEG-LANLTNLQVLDLSDNQNL 289
           DL    +  IQ G  K   L  L L  N+   + ++  +  L  L+V  L   +  
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 42/190 (22%), Positives = 64/190 (33%), Gaps = 15/190 (7%)

Query: 100 NETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKML 159
           N TI+    +     L   + LF+    +    L       +        F      + L
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV------KDFSYNFGWQHL 309

Query: 160 NLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG 219
            L +  F       L +L  LT       +           +L  L+ LDLS N  ++  
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA------FSEVDLPSLEFLDLSRN-GLSFK 362

Query: 220 SLTRLGLANLTNLKKLDLGSCGITTI-QGLAKLKNLEALDLSYNYYIH-SSLEGLANLTN 277
                     T+LK LDL   G+ T+      L+ LE LD  ++     S      +L N
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 278 LQVLDLSDNQ 287
           L  LD+S   
Sbjct: 423 LIYLDISHTH 432

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 9e-17
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 16/175 (9%)

Query: 120 SLFHPFEELQRLDLPGNWFTGI--YENRAYDSFGSLKQLKMLNLGDNFFNDS---ILPYL 174
           +       L+   L    F      E     +   L  L +      + +     I+   
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
           N LT++++  L   +IE     +  +     Q L+L            +     L +LK+
Sbjct: 279 NCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNC------KFGQFPTLKLKSLKR 329

Query: 235 LDLGSCGITTIQGLAKLKNLEALDLSYN--YYIHSSLEGLANLTNLQVLDLSDNQ 287
           L   S           L +LE LDLS N   +     +     T+L+ LDLS N 
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 33/186 (17%), Positives = 56/186 (30%), Gaps = 30/186 (16%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTLILS 186
              LDL  N    I       +F  ++ L  L L +NF + +++   +  L  L    L 
Sbjct: 179 NLSLDLSLNPMNFIQPG----AFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 187 DNSIEGSR-----TKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG 241
                         K  L  L  L + +    +              LTN+    L S  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 242 ITTIQGLAKLKNLEALDLSYNYY-------------------IHSSLEGLANLTNLQVLD 282
           I  ++  +     + L+L    +                      +     +L +L+ LD
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 283 LSDNQN 288
           LS N  
Sbjct: 354 LSRNGL 359

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.4 bits (230), Expect = 4e-21
 Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 19/181 (10%)

Query: 128 LQRLDLPGNWFTGIYENRAY---DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
           +  +D   N    +          +      +  +NL +N  +       +T + L+++ 
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 185 LSDNSIEG------SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLG 238
           L  N +            +   N   L  +DL  N  +T  S        L  L  +DL 
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDD-FRATTLPYLVGIDLS 521

Query: 239 SCGITTI-QGLAKLKNLEALDLSYNYYIHSSL------EGLANLTNLQVLDLSDNQNLTT 291
               +           L+   +        +       EG+    +L  L +  N  +  
Sbjct: 522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRK 580

Query: 292 L 292
           +
Sbjct: 581 V 581

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 21/185 (11%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN-------DSILP 172
           +     E+++ L    N    I          S+  +  ++   N          D + P
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNI---FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 173 YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGLA 227
                 +++++ LS+N I     K+  +    L  ++L GN  +T               
Sbjct: 428 TPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFK 485

Query: 228 NLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLS 284
           N   L  +DL    +T +        L  L  +DLSYN           N + L+   + 
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIR 544

Query: 285 DNQNL 289
           + ++ 
Sbjct: 545 NQRDA 549

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 12/177 (6%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAY---DSFGSLKQLKMLNLGDNFFNDSILP--YL 174
            LF     L  ++L GN  T I +N      ++F +   L  ++L  N     +      
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL---GLANLTN 231
            TL  L  + LS NS           N   L+   +    +       R    G+    +
Sbjct: 510 TTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 232 LKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN 288
           L +L +GS  I  +       N+  LD+  N  I   L  +       +  L  ++ 
Sbjct: 568 LTQLQIGSNDIRKVNEKI-TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 34/183 (18%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-------SILPYLNTLTSL 180
           +  ++L  N  +        + F +   L  +NL  N   +                  L
Sbjct: 435 VSSINLSNNQISKF----PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL--GLANLTNLKKLDLG 238
           T++ L  N +           L YL  +DLS N      S ++      N + LK   + 
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN------SFSKFPTQPLNSSTLKGFGIR 544

Query: 239 SCGI-------TTI-QGLAKLKNLEALDLSYNYYIHSSLEGL--ANLTNLQVLDLSDNQN 288
           +              +G+    +L  L +  N      +  +      N+ VLD+ DN N
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-----DIRKVNEKITPNISVLDIKDNPN 599

Query: 289 LTT 291
           ++ 
Sbjct: 600 ISI 602

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 27/204 (13%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 96  QLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQ 155
           +   NE  ++     +      N+       +L  +++                  +L +
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLK------DLTDVEVYNCPNLTKLP----TFLKALPE 274

Query: 156 LKMLNLGDNFF--------NDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207
           ++++N+  N          +   L        +  + +  N+++    +  L  ++ L +
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

Query: 208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI--QGLAKLKNLEALDLSYNY-- 263
           L+   N  +           +   L  L+L    IT I        + +E L  ++N   
Sbjct: 335 LECLYN-QLEG---KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390

Query: 264 YIHSSLEGLANLTNLQVLDLSDNQ 287
           YI +  +   +++ +  +D S N+
Sbjct: 391 YIPNIFD-AKSVSVMSAIDFSYNE 413

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.1 bits (198), Expect = 6e-17
 Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 21/224 (9%)

Query: 71  DDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQR 130
           +     D      GV  N+  R V  LSL        +SG     +  ++      EL+ 
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGR-VTGLSLEG----FGASGRVPDAIGQLT------ELEV 109

Query: 131 LDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL--NTLTSLTTLILSDN 188
           L L  +               +    +        +  + + Y      + L    ++ +
Sbjct: 110 LALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169

Query: 189 SIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL 248
             + S  K+          +    N NIT  S     +  LT L++  +G+         
Sbjct: 170 PQQKS-IKKSSRITLKDTQIGQLSN-NITFVSKA---VMRLTKLRQFYMGNSPFV---AE 221

Query: 249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
              +  E  +  Y     +      NL +L  +++ +  NLT L
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 21/161 (13%), Positives = 49/161 (30%), Gaps = 15/161 (9%)

Query: 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG---LANLRYL 205
           S  S  ++  L+L     +  +   +  LT L  L L  +  + +    G   ++     
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS----CGITTIQGLAKLKNLEALDLSY 261
           +        +     +      + ++L K  + S      I     +        +    
Sbjct: 136 EQKQKMRM-HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI--TLKDTQIGQLS 192

Query: 262 NYYIHSSLEGLANLTNLQVLDLSDNQ----NLTTLGKPLNL 298
           N  I    + +  LT L+   + ++     N+    +  N 
Sbjct: 193 N-NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 6e-21
 Identities = 41/171 (23%), Positives = 59/171 (34%), Gaps = 10/171 (5%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +    F   + L  L L  N  + I       +F  L +L+ L L  N      LP    
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQL--KELP-EKM 119

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
             +L  L + +N I     K     L  + V++L  N  + S  +       +  L  + 
Sbjct: 120 PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIR 177

Query: 237 LGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           +    ITTI       +L  L L  N         L  L NL  L LS N 
Sbjct: 178 IADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.1 bits (219), Expect = 3e-20
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 16/167 (9%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTT 182
            + LQ L +  N  T + ++     F  L Q+ ++ LG N    S +       +  L+ 
Sbjct: 120 PKTLQELRVHENEITKVRKS----VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGI 242
           + ++D +I  +   QGL     L  L L GN  IT   +    L  L NL KL L    I
Sbjct: 176 IRIADTNI--TTIPQGL--PPSLTELHLDGN-KITK--VDAASLKGLNNLAKLGLSFNSI 228

Query: 243 TTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           + +    LA   +L  L L+ N  +     GLA+   +QV+ L +N 
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 7e-19
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 16/178 (8%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +  S+F+   ++  ++L  N            +F  +K+L  + + D     + +P    
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIEN--GAFQGMKKLSYIRIADTNI--TTIP-QGL 190

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
             SLT L L  N I        L  L  L  L LS N +I++  +    LAN  +L++L 
Sbjct: 191 PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN-SISA--VDNGSLANTPHLRELH 246

Query: 237 LGSCGITTIQ-GLAKLKNLEALDLSYNY--YIHSS----LEGLANLTNLQVLDLSDNQ 287
           L +  +  +  GLA  K ++ + L  N    I S+            +   + L  N 
Sbjct: 247 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 26/177 (14%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           F   ++L  + +     T I         G    L  L+L  N         L  L +L 
Sbjct: 167 FQGMKKLSYIRIADTNITTI-------PQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 219

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL--GLANLTNLKKLDLGS 239
            L LS NSI  +     LAN  +L+ L L+ N       L ++  GLA+   ++ + L +
Sbjct: 220 KLGLSFNSIS-AVDNGSLANTPHLRELHLNNN------KLVKVPGGLADHKYIQVVYLHN 272

Query: 240 CGITTIQG--------LAKLKNLEALDLSYNYYIHSSLEGLA--NLTNLQVLDLSDN 286
             I+ I            K  +   + L  N   +  ++      +     + L + 
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 16/143 (11%)

Query: 156 LKMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
             +L+L +N    + +       L +L TLIL +N I    +    A L  L+ L LS N
Sbjct: 54  TALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 214 FNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEG 271
                  L  L       L++L +    IT ++      L  +  ++L  N    S +E 
Sbjct: 111 ------QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 272 LA--NLTNLQVLDLSDNQNLTTL 292
            A   +  L  + ++D  N+TT+
Sbjct: 165 GAFQGMKKLSYIRIADT-NITTI 186

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 88.5 bits (220), Expect = 7e-21
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
            L      NLG     D  L     L+ +      +++I   ++  G+     L+ L LS
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNI---QSLAGMQFFTNLKELHLS 71

Query: 212 GNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEG 271
            N  I+  S     L +LT L++L +    +  + G+     L  L L  N       + 
Sbjct: 72  HN-QISDLS----PLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNEL--RDTDS 123

Query: 272 LANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           L +L NL++L + +N+  ++  LG    L 
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVMLGFLSKLE 153

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 17/175 (9%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
           +++    F  L+ L L  N  + +           L +L+ L++  N      L  + + 
Sbjct: 55  SLAGMQFFTNLKELHLSHNQISDL------SPLKDLTKLEELSVNRN--RLKNLNGIPSA 106

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
             L+ L L +N +        L +L+ L++L +  N  + S       L  L+ L+ LDL
Sbjct: 107 C-LSRLFLDNNELR---DTDSLIHLKNLEILSIRNN-KLKSIV----MLGFLSKLEVLDL 157

Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
               IT   GL +LK +  +DL+    ++  ++    L     +   D + ++  
Sbjct: 158 HGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 77.4 bits (191), Expect = 8e-17
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 13/128 (10%)

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
              L +     L   S+           L  +Q  +   + NI S +    G+   TNLK
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNS-NIQSLA----GMQFFTNLK 66

Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTT 291
           +L L    I+ +  L  L  LE L ++ N  +  +L G+ +   L  L L +N+  +  +
Sbjct: 67  ELHLSHNQISDLSPLKDLTKLEELSVNRN-RL-KNLNGIPSA-CLSRLFLDNNELRDTDS 123

Query: 292 LGKPLNLR 299
           L    NL 
Sbjct: 124 LIHLKNLE 131

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGI 242
            I     I           L      +L    ++T           L+ ++  +  +  I
Sbjct: 2   SIQRPTPIN---QVFPDPGLANAVKQNLGKQ-SVTDLV----SQKELSGVQNFNGDNSNI 53

Query: 243 TTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            ++ G+    NL+ L LS+N    S L  L +LT L+ L ++ N+
Sbjct: 54  QSLAGMQFFTNLKELHLSHNQ--ISDLSPLKDLTKLEELSVNRNR 96

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.1 bits (226), Expect = 8e-21
 Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 22/183 (12%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           SL      ++ LDL GN  + I             +L++LNL  N   +     L +L++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS 239
           L TL L++N +      Q L     ++ L  + N      +++R+  +     K + L +
Sbjct: 82  LRTLDLNNNYV------QELLVGPSIETLHAANN------NISRVSCSRGQGKKNIYLAN 129

Query: 240 CGITTIQGLA--KLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTTLGKPL 296
             IT ++ L       ++ LDL  N     +   L A+   L+ L+L  N  +  +   +
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV 188

Query: 297 NLR 299
              
Sbjct: 189 VFA 191

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.3 bits (211), Expect = 8e-19
 Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 27/192 (14%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLN 175
           ++ +   PF +L+ L+L  N               SL  L+ L+L +N+  +  + P + 
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYET------LDLESLSTLRTLDLNNNYVQELLVGPSIE 102

Query: 176 TL---------------TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS 220
           TL                    + L++N I              +Q LDL  N  I + +
Sbjct: 103 TLHAANNNISRVSCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLN-EIDTVN 160

Query: 221 LTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV 280
              L  A+   L+ L+L    I  ++G      L+ LDLS N  +        +   +  
Sbjct: 161 FAEL-AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTW 218

Query: 281 LDLSDNQNLTTL 292
           + L +N+ L  +
Sbjct: 219 ISLRNNK-LVLI 229

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.4 bits (193), Expect = 2e-16
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 27/167 (16%)

Query: 148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207
           +   +  + K+  + D+    ++     +  ++  L LS N +        LA    L++
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62

Query: 208 LDLSGNFNITSGSLTRLG-LANLTNLKKLDLGSCGITTIQGLAKLK-------------- 252
           L+LS N       L     L +L+ L+ LDL +  +  +     ++              
Sbjct: 63  LNLSSN------VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC 116

Query: 253 ----NLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295
                 + + L+ N             + +Q LDL  N+ + T+   
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFA 162

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 8e-11
 Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 7/161 (4%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ LDL  N    +        F S   +  ++L +N     I   L    +L    L  
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG 247
           N       +   +  + +Q +       +T  +     +  L +                
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 248 LAKLKNLEALDLSYNYYIHSSLE-GLANLTNLQVLDLSDNQ 287
           L  LK  E   LS        LE    N    + +D    Q
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 20/205 (9%), Positives = 43/205 (20%), Gaps = 36/205 (17%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT-LTSL 180
           F     +  + L  N    I +     +    + L+  +L  N F+   L    +    +
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEK-----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRL-------------- 224
            T+           T Q         +         ++ +    RL              
Sbjct: 265 QTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 225 ---------GLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLA 273
                       N    +++D       T+      + +    L+            G  
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 274 NLTNLQVLDLSDNQNLTTLGKPLNL 298
               L          +         
Sbjct: 382 AHAELDGTLQQAVGQIELQHATEEQ 406

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.0 bits (226), Expect = 1e-20
 Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 12/174 (6%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLT 178
            +       +RL L  N+   +       SF  L+QL++L LG  +   +I       L 
Sbjct: 18  QVPQVLNTTERLLLSFNYIRTVTA----SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLG 238
           +L  L L  + I           L +L  L L     ++   L      NL  L +LDL 
Sbjct: 74  NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLS 131

Query: 239 SCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEGLANLT--NLQVLDLSDNQ 287
              I ++       KL +L+++D S N         L  L    L    L+ N 
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.5 bits (204), Expect = 9e-18
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 16/172 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           LN  +F   ++L+ L+L  N    I +    ++F  L  L++LNL  N   +        
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIAD----EAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
           L  +  + L  N I      Q    L  LQ LDL  N  +T+       +  + ++  + 
Sbjct: 337 LPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN-ALTT-------IHFIPSIPDIF 387

Query: 237 LGSCGITTIQGLAKLKNLEALDLSYNYYIH-SSLEGLANLTNLQVLDLSDNQ 287
           L    + T+  +    NL  + LS N   +   L  L  + +LQ+L L+ N+
Sbjct: 388 LSGNKLVTLPKINLTANL--IHLSENRLENLDILYFLLRVPHLQILILNQNR 437

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 4e-17
 Identities = 46/182 (25%), Positives = 69/182 (37%), Gaps = 16/182 (8%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +  S F   E+LQ L+L   +     +    ++F +L  L++L+LG +            
Sbjct: 39  VTASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAFQG 95

Query: 177 LTSLTTLILSDNSIEGSRTKQG-LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
           L  L  L L    +  +  K G   NL+ L  LDLS N  I S  L       L +LK +
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYL-HPSFGKLNSLKSI 153

Query: 236 DLGSCGITTIQGLA----KLKNLEALDLSYNYYIHSSLEGLANLTN------LQVLDLSD 285
           D  S  I  +        + K L    L+ N              N      L++LD+S 
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

Query: 286 NQ 287
           N 
Sbjct: 214 NG 215

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.5 bits (196), Expect = 1e-16
 Identities = 41/184 (22%), Positives = 67/184 (36%), Gaps = 17/184 (9%)

Query: 128 LQRLDLPGNWFTGIYEN--------RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL-- 177
           L+ LD+ GN +T                 S      +     G +   D        L  
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
           +S+  L LS   +    ++     L+ L+VL+L+ N  I    +       L NL+ L+L
Sbjct: 266 SSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYN-KINK--IADEAFYGLDNLQVLNL 321

Query: 238 GSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295
               +  +       L  +  +DL  N+      +    L  LQ LDL DN  LTT+   
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHFI 380

Query: 296 LNLR 299
            ++ 
Sbjct: 381 PSIP 384

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 78.3 bits (193), Expect = 3e-16
 Identities = 42/202 (20%), Positives = 70/202 (34%), Gaps = 20/202 (9%)

Query: 109 SGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND 168
               + L ++   F     L+ LDL  +    ++     D+F  L  L  L L     +D
Sbjct: 56  GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP----DAFQGLFHLFELRLYFCGLSD 111

Query: 169 SILP--YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRL 224
           ++L   Y   L +LT L LS N I           L  L+ +D S N    +    L  L
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171

Query: 225 GLANLTNLKKLDLGSCGITTIQGLA--------KLKNLEALDLSYNYYIHSSLEGLAN-L 275
                  L    L +  + +   +         +   LE LD+S N +        +N +
Sbjct: 172 ---QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228

Query: 276 TNLQVLDLSDNQNLTTLGKPLN 297
           +  Q   L    ++   G   +
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFH 250

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 14/169 (8%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-NTLTSLTTLILS 186
              + L  N    +           +  L++L L  N F+        +   SL  L L 
Sbjct: 403 ANLIHLSENRLENL---DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 187 DNSIEGSR----TKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGI 242
           +N ++ +            L +LQVL L+ N  + S  L     ++LT L+ L L S  +
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNS--LPPGVFSHLTALRGLSLNSNRL 516

Query: 243 TTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTT 291
           T +       NLE LD+S N  +  + +      +L VLD++ N+ +  
Sbjct: 517 TVLSHNDLPANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFICE 562

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.2 bits (224), Expect = 2e-20
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 8/173 (4%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +          LQ L L  +    I      D+F SL  L+ L+L DN  +     +   
Sbjct: 41  IGHGDLRACANLQVLILKSSRINTIEG----DAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
           L+SL  L L  N  +         NL  LQ L +      +   + R+  A LT+L +L+
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS--EIRRIDFAGLTSLNELE 154

Query: 237 LGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           + +  +   Q   L  ++++  L L  +            L++++ L+L D  
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.7 bits (215), Expect = 3e-19
 Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 30/197 (15%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--- 173
              +++   E+++R+ +  +    +  +        LK L+ L+L +N   +  L     
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCS----FSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 174 LNTLTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNF-----------------N 215
                SL TL+LS N +    +T + L  L+ L  LD+S N                  N
Sbjct: 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN 416

Query: 216 ITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANL 275
           ++S  +  +       L+ LD+ +  + +      L  L+ L +S N  +  +L   +  
Sbjct: 417 LSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNK-L-KTLPDASLF 472

Query: 276 TNLQVLDLSDNQNLTTL 292
             L V+ +S NQ L ++
Sbjct: 473 PVLLVMKISRNQ-LKSV 488

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 9e-19
 Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 14/171 (8%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L N +    +  LQ L L  N    +   +  +   +LK L  L++  N F+  +     
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSM--QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
               +  L LS   I            + L+VLD+S N      +L       L  L++L
Sbjct: 408 WPEKMRFLNLSSTGI----RVVKTCIPQTLEVLDVSNN------NLDSFS-LFLPRLQEL 456

Query: 236 DLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
            +    + T+   +    L  + +S N            LT+LQ + L  N
Sbjct: 457 YISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 6e-17
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 96  QLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQ 155
            +          +  S + LL  +       E++  D   N       +   D    L +
Sbjct: 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE-SDVVSELGK 282

Query: 156 LKMLNLGDNFFNDSILPYLNT-----LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDL 210
           ++ + +         L Y  +     L  +  + + ++ +          +L+ L+ LDL
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL 341

Query: 211 SGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG----LAKLKNLEALDLSYNYYIH 266
           S N  +              +L+ L L    + ++Q     L  LKNL +LD+S N   H
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFH 400

Query: 267 SSLEGLANLTNLQVLDLSDNQ 287
              +       ++ L+LS   
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTG 421

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 27/211 (12%), Positives = 65/211 (30%), Gaps = 44/211 (20%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +    F     L  L++               S  S++ +  L L  +     +  + + 
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQ----SLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 177 LTSLTTLILSDNSIEG---------------------------------SRTKQGLANLR 203
           L+S+  L L D ++                                    +  + +  L 
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 204 YLQVLDLSGNF-----NITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEA 256
            ++  D + N         S  ++ LG      +++L +    +        + L+ ++ 
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           + +  +           +L +L+ LDLS+N 
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
               ++ +L LS N I        L     LQVL L  +  I +  +      +L +L+ 
Sbjct: 23  GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS-RINT--IEGDAFYSLGSLEH 78

Query: 235 LDLGSCGITTI--QGLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTT 291
           LDL    ++++       L +L+ L+L  N Y    +  L  NLTNLQ L + + +  + 
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 292 L 292
           +
Sbjct: 139 I 139

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 205 LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYN 262
           ++ LDLS N  IT   +    L    NL+ L L S  I TI+G     L +LE LDLS N
Sbjct: 28  MKSLDLSFN-KITY--IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 263 YYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295
           +    S      L++L+ L+L  N    TLG  
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVT 116

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 28/212 (13%), Positives = 58/212 (27%), Gaps = 43/212 (20%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L   SLF     LQ L +                F  L  L  L +      +     L 
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRR---IDFAGLTSLNELEIKALSLRNYQSQSLK 169

Query: 176 TLTSLTTLILSDNSIE--GSRTKQGLANLRYLQVLDLSGNFNITSG-------------- 219
           ++  +  L L  +            L+++RYL++ D +      S               
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 220 ----------------------SLTRLGLANLTNLKKLDLGSCGITTIQGLAKLK--NLE 255
                                  L+ +   + T     D        +  L K++   + 
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 256 ALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            L +   Y  +      + L  ++ + + +++
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 5e-20
 Identities = 46/179 (25%), Positives = 65/179 (36%), Gaps = 12/179 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LN 175
           +  + F     L  L L  N    I       +F  L  L+ L+L DN    S+ P   +
Sbjct: 47  VPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
            L  L TL L    ++          L  LQ L L  N  + +  L      +L NL  L
Sbjct: 103 GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN-ALQA--LPDDTFRDLGNLTHL 158

Query: 236 DLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
            L    I+++       L +L+ L L  N   H       +L  L  L L  N  L+ L
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.2 bits (201), Expect = 5e-18
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 6/139 (4%)

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215
            + + L  N  +           +LT L L  N +           L  L+ LDLS N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQ 92

Query: 216 ITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLA 273
           + S  +       L  L  L L  CG+  +       L  L+ L L  N       +   
Sbjct: 93  LRS--VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 274 NLTNLQVLDLSDNQNLTTL 292
           +L NL  L L  N+ ++++
Sbjct: 151 DLGNLTHLFLHGNR-ISSV 168

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 38/150 (25%), Positives = 56/150 (37%), Gaps = 14/150 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           ++ + FH    L  L L       +        F  L  L+ L L DN      LP    
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDNAL--QALPDDTF 149

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
             L +LT L L  N I  S  ++    L  L  L L  N  +    +      +L  L  
Sbjct: 150 RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN-RVAH--VHPHAFRDLGRLMT 205

Query: 235 LDLGSCGITTIQG--LAKLKNLEALDLSYN 262
           L L +  ++ +    LA L+ L+ L L+ N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 19/183 (10%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP--YL 174
           L  +L   F +++ L+L       I       +F     ++ L +G N      LP    
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAI--RYLPPHVF 113

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
             +  LT L+L  N +  S  +    N   L  L +S N N+    +        T+L+ 
Sbjct: 114 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN-NLE--RIEDDTFQATTSLQN 169

Query: 235 LDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK 294
           L L S  +T +  L+ + +L   ++SYN      L  LA    ++ LD S N  +  +  
Sbjct: 170 LQLSSNRLTHVD-LSLIPSLFHANVSYN-----LLSTLAIPIAVEELDASHNS-INVVRG 222

Query: 295 PLN 297
           P+N
Sbjct: 223 PVN 225

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.3 bits (214), Expect = 2e-19
 Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 20/176 (11%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L   +FH   +L  L +  N    I +    D+F +   L+ L L  N      +  L+ 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTH--VD-LSL 184

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
           + SL    +S N +        LA    ++ LD S N      S+  +       L  L 
Sbjct: 185 IPSLFHANVSYNLL------STLAIPIAVEELDASHN------SINVVRGPVNVELTILK 232

Query: 237 LGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
           L    +T    L     L  +DLSYN            +  L+ L +S+N+ L  L
Sbjct: 233 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVAL 287

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 18/171 (10%)

Query: 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
            +S       ++ LD   N    +             +L +L L  N   D    +L   
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVV-------RGPVNVELTILKLQHNNLTD--TAWLLNY 247

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
             L  + LS N +E          ++ L+ L +S N  + + +L       +  LK LDL
Sbjct: 248 PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN-RLVALNLY---GQPIPTLKVLDL 302

Query: 238 GSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
               +  ++    +   LE L L +N     +L+ L+    L+ L LS N 
Sbjct: 303 SHNHLLHVERNQPQFDRLENLYLDHNSI--VTLK-LSTHHTLKNLTLSHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 7/149 (4%)

Query: 148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207
            +         +++     +        TL +   +   ++++        L + R +++
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVEL 73

Query: 208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYI 265
           L+L+    I    +     A    ++KL +G   I  +       +  L  L L  N   
Sbjct: 74  LNLNDL-QIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 266 HSSLEGLANLTNLQVLDLSDNQNLTTLGK 294
                   N   L  L +S+N  L  +  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNN-LERIED 158

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 14/160 (8%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             EL  L L  N  T            +   L  ++L  N     +      +  L  L 
Sbjct: 225 NVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           +S+N +           +  L+VLDLS N ++    + R        L+ L L    I T
Sbjct: 279 ISNNRL--VALNLYGQPIPTLKVLDLSHN-HLLH--VER-NQPQFDRLENLYLDHNSIVT 332

Query: 245 IQGLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDL 283
           ++ L+    L+ L LS+N +  +SL  L  N+    V D 
Sbjct: 333 LK-LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 11/128 (8%)

Query: 169 SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN 228
            I   L        + +   + +     + +  L   +++    +  +    L    L +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNS-TMRK--LPAALLDS 67

Query: 229 LTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYN--YYIHSSLEGLANLTNLQVLDLS 284
              ++ L+L    I  I     A    ++ L + +N   Y+   +    N+  L VL L 
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTVLVLE 125

Query: 285 DNQNLTTL 292
            N  L++L
Sbjct: 126 RND-LSSL 132

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
             P   L+ LDL  N    +  N          +L+ L L  N      L  L+T  +L 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSI--VTLK-LSTHHTLK 342

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDL 210
            L LS N  + +  +    N+    V D 
Sbjct: 343 NLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 15/171 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT---LT 178
                 L+ LDL  N    +  N     F  L+QL+ L+   +      +   +    L 
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNL--KQMSEFSVFLSLR 421

Query: 179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLG 238
           +L  L +S      +        L  L+VL ++GN +     L  +    L NL  LDL 
Sbjct: 422 NLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDI-FTELRNLTFLDLS 478

Query: 239 SCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            C +  +       L +L+ L+++ N            LT+LQ + L  N 
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 4e-19
 Identities = 47/211 (22%), Positives = 76/211 (36%), Gaps = 21/211 (9%)

Query: 87  CNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSL----FHPFEELQRLDLPGNWFTGIY 142
            N ++  ++ +++     F+Y+ G     L+N           + L+RL    N     +
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 143 ENRAYDSFGSLKQLKMLNLGDNFFNDSILP--YLNTLTSLTTLILSDNSIEGSRTKQGLA 200
                 S   L  L+ L+L  N  +            TSL  L LS N +          
Sbjct: 342 ------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFL 393

Query: 201 NLRYLQVLDLSGNFNITSGSLTRLG-LANLTNLKKLDLGSCGITTI--QGLAKLKNLEAL 257
            L  L+ LD   + N+    ++      +L NL  LD+               L +LE L
Sbjct: 394 GLEQLEHLDFQHS-NLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 258 DLSYNYYIHSSLEG-LANLTNLQVLDLSDNQ 287
            ++ N +  + L      L NL  LDLS  Q
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.5 bits (212), Expect = 8e-19
 Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 14/183 (7%)

Query: 115 LLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL 174
              N         L+ LDL  N  +         S      LK L+L  N    ++    
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS--QSDFGTTSLKYLDLSFNGV-ITMSSNF 392

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
             L  L  L    ++++         +LR L  LD+S   +             L++L+ 
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRV--AFNGIFNGLSSLEV 449

Query: 235 LDLGSCGITTI---QGLAKLKNLEALDLSYNY--YIHSSLEGLANLTNLQVLDLSDNQNL 289
           L +               +L+NL  LDLS      +  +     +L++LQVL+++ NQ L
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMASNQ-L 506

Query: 290 TTL 292
            ++
Sbjct: 507 KSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.8 bits (210), Expect = 1e-18
 Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 14/182 (7%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L    F  F ELQ LDL       I +     ++ SL  L  L L  N      L   + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
           L+SL  L+  + ++  S     + +L+ L+ L+++ N  I S  L     +NLTNL+ LD
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLD 155

Query: 237 LGSCGITTI-----QGLAKLKNLEA-LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290
           L S  I +I     + L ++  L   LDLS N            +  L  L L +N +  
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL 214

Query: 291 TL 292
            +
Sbjct: 215 NV 216

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 13/174 (7%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           +     L  L L GN    +    A  +F  L  L+ L   +          +  L +L 
Sbjct: 72  YQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK----KLDL 237
            L ++ N I+  +  +  +NL  L+ LDLS N  I   S+    L  L  +      LDL
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQ--SIYCTDLRVLHQMPLLNLSLDL 184

Query: 238 GSCGITTIQGLA-KLKNLEALDLSYNYYIHSSLEG-LANLTNLQVLDLSDNQNL 289
               +  IQ  A K   L  L L  N+   + ++  +  L  L+V  L   +  
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215
            K L+L  N           +   L  L LS   I+         +L +L  L L+GN  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGN-P 87

Query: 216 ITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSL-EGL 272
           I   SL     + L++L+KL      + +++   +  LK L+ L++++N      L E  
Sbjct: 88  IQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 273 ANLTNLQVLDLSDNQ 287
           +NLTNL+ LDLS N+
Sbjct: 146 SNLTNLEHLDLSSNK 160

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           S F   E+L+ LD   +    + E   +  F SL+ L  L++       +     N L+S
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS 239
           L  L ++ NS + +        LR L  LDLS    +    L+     +L++L+ L++ S
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLE--QLSPTAFNSLSSLQVLNMAS 503

Query: 240 CGITTIQG--LAKLKNLEALDLSYN 262
             + ++      +L +L+ + L  N
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 16/186 (8%)

Query: 109 SGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIY--ENRAYDSFGSLKQLKMLNL---GD 163
             +  +L +  +       L+   L    F      E     +   L  L +        
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 164 NFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTR 223
           +++ D I+   N LT++++  L   +IE  +        ++L++++             +
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG---------Q 318

Query: 224 LGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYN--YYIHSSLEGLANLTNLQVL 281
                L +LK+L   S           L +LE LDLS N   +     +     T+L+ L
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 282 DLSDNQ 287
           DLS N 
Sbjct: 379 DLSFNG 384

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
            S   L LS N +          +   LQVLDLS    I   ++      +L++L  L L
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC-EIQ--TIEDGAYQSLSHLSTLIL 83

Query: 238 GSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295
               I ++     + L +L+ L              + +L  L+ L+++ N  + +   P
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLP 142

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 9e-11
 Identities = 31/200 (15%), Positives = 59/200 (29%), Gaps = 34/200 (17%)

Query: 117 LNMSLFHPFEELQ----RLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP 172
           +  +      ++      LDL  N    I       +F  ++ L  L L +NF + +++ 
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG----AFKEIR-LHKLTLRNNFDSLNVMK 218

Query: 173 -YLNTLTSLTTLILSDNSIEGSRTKQGL-----ANLRYLQVLDLSGNFNITSGSLTRLGL 226
             +  L  L    L           +         L  L + +    +            
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 227 ANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH-------------------S 267
             LTN+    L S  I  ++  +     + L+L    +                      
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 268 SLEGLANLTNLQVLDLSDNQ 287
           +     +L +L+ LDLS N 
Sbjct: 339 NAFSEVDLPSLEFLDLSRNG 358

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 9e-10
 Identities = 37/184 (20%), Positives = 62/184 (33%), Gaps = 24/184 (13%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
                 + L+ L++  N           + F +L  L+ L+L  N         L  L  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 180 LT----TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
           +     +L LS N +  +  + G      L  L L  NF+  S ++ +  +  L  L+  
Sbjct: 175 MPLLNLSLDLSLNPM--NFIQPGAFKEIRLHKLTLRNNFD--SLNVMKTCIQGLAGLEVH 230

Query: 236 DLGSCGIT-----------TIQGLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDL 283
            L                  ++GL  L  +E   L+Y  Y    +  L   LTN+    L
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 284 SDNQ 287
               
Sbjct: 290 VSVT 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.5 bits (207), Expect = 1e-18
 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 26/178 (14%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN---------FFNDSILPYLNTLT 178
           L+ L L  N    +       S  SL +L+ L++              +         L 
Sbjct: 129 LETLTLARNPLRALPA-----SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL--GLANLTNLKKLD 236
           +L +L L    I        +ANL+ L+ L +  +       L+ L   + +L  L++LD
Sbjct: 184 NLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNS------PLSALGPAIHHLPKLEELD 235

Query: 237 LGSC-GITTI-QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
           L  C  +            L+ L L     + +    +  LT L+ LDL    NL+ L
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 18/168 (10%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
            + L   G+                L Q +     D     S     N   +      + 
Sbjct: 14  RENLYFQGS-------TALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIETRTG 65

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL--GLANLTNLKKLDLGSCGITTI 245
            +++ +      A       L+L          L +       L++L+ + + + G+  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSV------PLPQFPDQAFRLSHLQHMTIDAAGLMEL 119

Query: 246 -QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
              + +   LE L L+ N  + +    +A+L  L+ L +     LT L
Sbjct: 120 PDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTEL 166

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 17/122 (13%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ L +  +  + +       +   L +L+ L+L       +  P       L  LIL D
Sbjct: 208 LKSLKIRNSPLSALGP-----AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 188 NSIEGSRTK--QGLANLRYLQVLDLSGNFNITSGSLTRL--GLANLTNLKKLDLGSCGIT 243
            S   +       +  L  L+ LDL G  N     L+RL   +A L     + +      
Sbjct: 263 CS---NLLTLPLDIHRLTQLEKLDLRGCVN-----LSRLPSLIAQLPANCIILVPPHLQA 314

Query: 244 TI 245
            +
Sbjct: 315 QL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 15/112 (13%), Positives = 28/112 (25%), Gaps = 22/112 (19%)

Query: 201 NLRYLQVLDLSGNFNITS-----GSLTRLG------------LANLTNLKKLDLGSCGIT 243
           +    + L   G+  +           R               AN  N +        + 
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 244 TIQ---GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
                   A      AL+L     +    +    L++LQ + +     L  L
Sbjct: 70  ATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAG-LMEL 119

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 38/167 (22%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLT--SLTT 182
              L  L +  N    + +      F  L+ +  + +G N   +S            L  
Sbjct: 122 PSSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFEP-GAFDGLKLNY 176

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGI 242
           L +S+  +    T         L  L L  N  I +  +    L   + L +L LG   I
Sbjct: 177 LRISEAKL----TGIPKDLPETLNELHLDHN-KIQA--IELEDLLRYSKLYRLGLGHNQI 229

Query: 243 TTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
             I+   L+ L  L  L L  N  +     GL +L  LQV+ L  N 
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 11/166 (6%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
           F   + L  L L  N  + I+E     +F  L++L+ L +  N      +P  N  +SL 
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNHL--VEIP-PNLPSSLV 126

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG 241
            L + DN I     K   + LR +  +++ GN  + +          L  L  L +    
Sbjct: 127 ELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAK 183

Query: 242 ITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           +T I      + L  L L +N      LE L   + L  L L  NQ
Sbjct: 184 LTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +   +F     +  +++ GN            +F  LK L  L + +     + +P  + 
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEP--GAFDGLK-LNYLRISEAKL--TGIP-KDL 191

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
             +L  L L  N I+ +   + L     L  L L  N  I    +    L+ L  L++L 
Sbjct: 192 PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN-QIR--MIENGSLSFLPTLRELH 247

Query: 237 LGSCGITTIQ-GLAKLKNLEALDLSYNY--YIH----SSLEGLANLTNLQVLDLSDNQ 287
           L +  ++ +  GL  LK L+ + L  N    +       +           + L +N 
Sbjct: 248 LDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.9 bits (156), Expect = 7e-12
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 17/151 (11%)

Query: 156 LKMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213
             +L+L +N    S L       L  L  L+L +N I     ++  + LR LQ L +S N
Sbjct: 56  TTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

Query: 214 FNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEG 271
                  L  +     ++L +L +    I  +     + L+N+  +++  N   +S  E 
Sbjct: 113 ------HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 272 LA-NLTNLQVLDLSDNQNLTTL--GKPLNLR 299
            A +   L  L +S+   LT +    P  L 
Sbjct: 167 GAFDGLKLNYLRISEA-KLTGIPKDLPETLN 196

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
              T L L +N I     K     L++L  L L  N  I+   +     + L  L+KL +
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN-KIS--KIHEKAFSPLRKLQKLYI 109

Query: 238 GSCGITTIQGLAKLKNLEALDLSYN--YYIHSSLEGLANLTNLQVLDLSDNQ 287
               +  I       +L  L +  N    +   +   + L N+  +++  N 
Sbjct: 110 SKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGV--FSGLRNMNCIEMGGNP 158

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.2 bits (208), Expect = 2e-18
 Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 20/176 (11%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L   +FH   +L  L +  N    I ++    +F +   L+ L L  N      +  L+ 
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDD----TFQATTSLQNLQLSSNRLTH--VD-LSL 190

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
           + SL    +S N +        LA    ++ LD S N      S+  +       L  L 
Sbjct: 191 IPSLFHANVSYNLL------STLAIPIAVEELDASHN------SINVVRGPVNVELTILK 238

Query: 237 LGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
           L    +T    L     L  +DLSYN            +  L+ L +S+N+ L  L
Sbjct: 239 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVAL 293

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 79.6 bits (196), Expect = 7e-17
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 32/193 (16%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLN 175
           +    F     LQ L L  N  T +           +  L   N+  N  +  +I   + 
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLLSTLAIPIAVE 214

Query: 176 TL---------------TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS 220
            L                 LT L L  N++        L N   L  +DLS N  +    
Sbjct: 215 ELDASHNSINVVRGPVNVELTILKLQHNNL---TDTAWLLNYPGLVEVDLSYN-ELEK-- 268

Query: 221 LTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ 279
           +       +  L++L + +  +  +      +  L+ LDLS+N ++            L+
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE 327

Query: 280 VLDLSDNQNLTTL 292
            L L  N  + TL
Sbjct: 328 NLYLDHNS-IVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 3e-14
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 11/148 (7%)

Query: 149 SFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206
              +L   K++   ++      LP   L++   +  L L+D  IE        A    +Q
Sbjct: 46  EDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQ 102

Query: 207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYY 264
            L +  N  I    L      N+  L  L L    ++++          L  L +S N  
Sbjct: 103 KLYMGFN-AIRY--LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159

Query: 265 IHSSLEGLANLTNLQVLDLSDNQNLTTL 292
                +     T+LQ L LS N+ LT +
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNR-LTHV 186

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 14/132 (10%)

Query: 165 FFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224
              DS L Y      +   + + +   G         L   +++    +  +    L   
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFED----ITLNNQKIVTFKNS-TMRK--LPAA 69

Query: 225 GLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNY--YIHSSLEGLANLTNLQV 280
            L +   ++ L+L    I  I     A    ++ L + +N   Y+   +    N+  L V
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTV 127

Query: 281 LDLSDNQNLTTL 292
           L L  N  L++L
Sbjct: 128 LVLERND-LSSL 138

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 13/147 (8%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L + +    +  L  +DL  N    I     Y  F  +++L+ L + +N    ++  Y  
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
            + +L  L LS N +     ++       L+ L L  N      S+  L L+    LK L
Sbjct: 299 PIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHN------SIVTLKLSTHHTLKNL 350

Query: 236 DLGSCGITTIQGLAKLKNLEALDLSYN 262
            L           A  +N+    +   
Sbjct: 351 TLSHNDWDCNSLRALFRNVARPAVDDA 377

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 14/172 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
             P   L+ LDL  N    +  N          +L+ L L  N      L  L+T  +L 
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSI--VTLK-LSTHHTLK 348

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN------LKKL 235
            L LS N  + +  +    N+    V D   +  I       L             L+ +
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 236 DLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
            L S      +   +    + ++   +   + + +G   L   + L+   N+
Sbjct: 409 ALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNE 460

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 5e-18
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 12/175 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           ++ S       LQ L L  N    I E+    SF SL  L+ L+L  N+   S L     
Sbjct: 67  ISNSDLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNYL--SNLSSSWF 120

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
             L+SLT L L  N  +        ++L  LQ+L +      T   + R   A LT L++
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT--KIQRKDFAGLTFLEE 178

Query: 235 LDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           L++ +  + + +   L  ++N+  L L    +I      +   ++++ L+L D  
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.6 bits (194), Expect = 9e-17
 Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 20/189 (10%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LN 175
           L+ S F P   L  L+L GN +  + E      F  L +L++L +G+      I      
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSL---FSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
            LT L  L +  + ++ S   + L +++ +  L L          L  + +   ++++ L
Sbjct: 172 GLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMK-QHIL--LLEIFVDVTSSVECL 227

Query: 236 DLGSCGITTIQ----------GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
           +L    + T             L K      + ++    +   ++ L  ++ L  L+ S 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEFSR 286

Query: 286 NQNLTTLGK 294
           NQ L ++  
Sbjct: 287 NQ-LKSVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           +    F     L+ LDL  N+ + +    +   F  L  L  LNL  N +  ++      
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNL----SSSWFKPLSSLTFLNLLGNPY-KTLGETSLF 145

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
           + LT L  L + +        ++  A L +L+ L++  + ++ S       L ++ N+  
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQS--YEPKSLKSIQNVSH 202

Query: 235 LDLGSCGITTIQGLA--KLKNLEALDLSYNYYIHSSLE--------GLANLTNLQVLDLS 284
           L L       +  +      ++E L+L                    L      + + ++
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 285 DNQ 287
           D  
Sbjct: 263 DES 265

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 20/152 (13%), Positives = 51/152 (33%), Gaps = 19/152 (12%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-NTLTS 179
            F     L+ L++  +            S  S++ +  L L        +L    +  +S
Sbjct: 169 DFAGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSS 223

Query: 180 LTTLILSDNSIEGSRTKQ-------GLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNL 232
           +  L L D  ++     +        L      + + ++   ++         L  ++ L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE-SLFQVMK---LLNQISGL 279

Query: 233 KKLDLGSCGITTIQG--LAKLKNLEALDLSYN 262
            +L+     + ++      +L +L+ + L  N
Sbjct: 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 28/136 (20%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---------GSLTRLGL-- 226
            ++ +L LS+N I        L     LQ L L+ N  I +         GSL  L L  
Sbjct: 52  EAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSY 109

Query: 227 -----------ANLTNLKKLDLGSCGITTIQG---LAKLKNLEALDLSYNYYIHSSLEG- 271
                        L++L  L+L      T+      + L  L+ L +             
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 272 LANLTNLQVLDLSDNQ 287
            A LT L+ L++  + 
Sbjct: 170 FAGLTFLEELEIDASD 185

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 81.7 bits (201), Expect = 1e-17
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 17/180 (9%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL---- 171
           L  +   + +  L  + L       +YE      F +LK +  +         S      
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433

Query: 172 -PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL--GLAN 228
                    +  L L+   +        L  L  +  LDLS N       L  L   LA 
Sbjct: 434 SVLKMEYADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSHN------RLRALPPALAA 484

Query: 229 LTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNY-YIHSSLEGLANLTNLQVLDLSDNQ 287
           L  L+ L      +  + G+A L  L+ L L  N     ++++ L +   L +L+L  N 
Sbjct: 485 LRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 16/139 (11%)

Query: 62  KILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMS- 120
            + P      D + S    +   +K      RV+ L+  +     +         L++S 
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSH 472

Query: 121 --------LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SIL 171
                          L+ L    N    +      D   +L +L+ L L +N     + +
Sbjct: 473 NRLRALPPALAALRCLEVLQASDNALENV------DGVANLPRLQELLLCNNRLQQSAAI 526

Query: 172 PYLNTLTSLTTLILSDNSI 190
             L +   L  L L  NS+
Sbjct: 527 QPLVSCPRLVLLNLQGNSL 545

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 14/149 (9%)

Query: 141 IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200
           I+E R        ++++ L+         +   L+TL +   L LS N+IE       L+
Sbjct: 13  IFEERKSVVATEAEKVE-LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE---KISSLS 67

Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTN-LKKLDLGSCGITTIQGLAKLKNLEALDL 259
            +  L++L L  N  I         L  + + L++L +    I ++ G+ KL NL  L +
Sbjct: 68  GMENLRILSLGRN-LIKKIE----NLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM 122

Query: 260 SYNYYIHS--SLEGLANLTNLQVLDLSDN 286
           S N  I +   ++ LA L  L+ L L+ N
Sbjct: 123 SNN-KITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 10/106 (9%)

Query: 183 LILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGI 242
           L      IE  +    L+ L+  + L LS N NI   S     L+ + NL+ L LG   I
Sbjct: 30  LHGMIPPIE--KMDATLSTLKACKHLALSTN-NIEKIS----SLSGMENLRILSLGRNLI 82

Query: 243 TTIQGLAKL-KNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
             I+ L  +   LE L +SYN  I +SL G+  L NL+VL +S+N+
Sbjct: 83  KKIENLDAVADTLEELWISYNQ-I-ASLSGIEKLVNLRVLYMSNNK 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.4 bits (152), Expect = 7e-12
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 205 LQVLDLSGNFNITSGSLTRL--GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYN 262
            + ++L G        + ++   L+ L   K L L +  I  I  L+ ++NL  L L  N
Sbjct: 25  AEKVELHGMIP----PIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRN 80

Query: 263 YYIHSSLEGLANLTN-LQVLDLSDNQ 287
             I   +E L  + + L+ L +S NQ
Sbjct: 81  -LI-KKIENLDAVADTLEELWISYNQ 104

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 32/117 (27%), Positives = 42/117 (35%), Gaps = 14/117 (11%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
            L+ L L  N    I EN           L+ L +  N      L  +  L +L  L +S
Sbjct: 71  NLRILSLGRNLIKKI-EN----LDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMS 123

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLG-------LANLTNLKKLD 236
           +N I        LA L  L+ L L+GN                   +  L NLKKLD
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.6 bits (194), Expect = 5e-17
 Identities = 48/171 (28%), Positives = 64/171 (37%), Gaps = 16/171 (9%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
            ++   L L  N            +     +L  LNL       + L    TL  L TL 
Sbjct: 30  PKDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRA--ELTKLQVDGTLPVLGTLD 83

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           LS N +           L  L VLD+S N  +TS  L    L  L  L++L L    + T
Sbjct: 84  LSHNQL--QSLPLLGQTLPALTVLDVSFN-RLTS--LPLGALRGLGELQELYLKGNELKT 138

Query: 245 IQG--LAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTTL 292
           +    L     LE L L+ N  +     GL   L NL  L L +N  L T+
Sbjct: 139 LPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 24/177 (13%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
            +++   P+  L +L+L     T +         G+L  L  L+L  N    S+     T
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELTKL------QVDGTLPVLGTLDLSHNQLQ-SLPLLGQT 98

Query: 177 LTSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLG---LANLTN 231
           L +LT L +S N +        +GL  L+    L L GN       L  L    L     
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQE---LYLKGN------ELKTLPPGLLTPTPK 149

Query: 232 LKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
           L+KL L +  +T +    L  L+NL+ L L  N  +++  +G      L    L  N
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
           + + S   +     ++  +     L   +   +L LS N  + +   +   L   T L +
Sbjct: 7   SKVASHLEVNCDKRNL--TALPPDL--PKDTTILHLSEN-LLYT--FSLATLMPYTRLTQ 59

Query: 235 LDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTTL 292
           L+L    +T +Q    L  L  LDLS+N     SL  L   L  L VLD+S N+ LT+L
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQ--LQSLPLLGQTLPALTVLDVSFNR-LTSL 115

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.0 bits (192), Expect = 2e-16
 Identities = 41/170 (24%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLI 184
               LDL  N  + +           L  L  L L  N  + + +       + +L  L 
Sbjct: 40  YTALLDLSHNNLSRLRAEWT---PTRLTNLHSLLLSHN--HLNFISSEAFVPVPNLRYLD 94

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           LS N +  +  +   ++L+ L+VL L  N +I    + R    ++  L+KL L    I+ 
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNN-HIVV--VDRNAFEDMAQLQKLYLSQNQISR 150

Query: 245 IQ-----GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV--LDLSDNQ 287
                     KL  L  LDLS N      L  L  L       L L +N 
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.9 bits (171), Expect = 9e-14
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
           +    L LS N++   R +     L  L  L LS N ++    ++      + NL+ LDL
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLN--FISSEAFVPVPNLRYLDL 95

Query: 238 GSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEG-LANLTNLQVLDLSDNQNLTTL 292
            S  + T+     + L+ LE L L  N +I         ++  LQ L LS NQ ++  
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQ-ISRF 151

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 19/177 (10%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSL 180
           F P   L+ LDL  N    + E      F  L+ L++L L +N     +       +  L
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQL 138

Query: 181 TTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLG 238
             L LS N I        +    L  L +LDLS N  +    L    L  L    K  L 
Sbjct: 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLK--KLPLTDLQKLPAWVKNGLY 195

Query: 239 --------SCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
                    C +  +    + + L ++            + L N+ +L   + S+ +
Sbjct: 196 LHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYK 252

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.4 bits (188), Expect = 9e-16
 Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 12/174 (6%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN--DSILPY 173
           +++M           LD   N  T       +++ G L +L+ L L  N       I   
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTV----FENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
              + SL  L +S NS+     K   +  + L  L++S N  +T      L       +K
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCL----PPRIK 424

Query: 234 KLDLGSCGITTI-QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
            LDL S  I +I + + KL+ L+ L+++ N            LT+LQ + L  N
Sbjct: 425 VLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 75.7 bits (186), Expect = 1e-15
 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 8/168 (4%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSL 180
           ++  F  +   +   +    +           +     L+  +N   D++      LT L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMV----HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 181 TTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS 239
            TLIL  N ++  S+  +    ++ LQ LD+S N +++     +   +   +L  L++ S
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSY-DEKKGDCSWTKSLLSLNMSS 408

Query: 240 CGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
             +T          ++ LDL  N  I S  + +  L  LQ L+++ NQ
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ 455

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 10/168 (5%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L  S      +L+ L +  N    +        F   ++L+ L+L  N      +   + 
Sbjct: 36  LWTSDILSLSKLRILIISHNRIQYLDI----SVFKFNQELEYLDLSHNKL--VKIS-CHP 88

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
             +L  L LS N+ +     +   N+  L+ L LS   ++   S+    +A+L   K L 
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVL--PIAHLNISKVLL 145

Query: 237 LGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLS 284
           +        +    L++     L   +  +     + +++   V +L 
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 5e-09
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
              T L +S N I        + +L  L++L +S N  I    L          L+ LDL
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHN-RIQ--YLDISVFKFNQELEYLDL 76

Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQ 287
               +  I       NL+ LDLS+N +    +     N++ L+ L LS   
Sbjct: 77  SHNKLVKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 8/201 (3%)

Query: 96  QLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQ 155
            L +       +      ++    +L     +    D   ++F  I      +   S   
Sbjct: 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA----NLRYLQVLDLS 211
           L  +    N F    +  L   T++    +S+  ++G    +       +L+ L +  + 
Sbjct: 227 LNNIETTWNSFIR--ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284

Query: 212 GNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEG 271
            +      S      +N+ N+K   +    +  +   +K+     LD S N    +  E 
Sbjct: 285 SDVFGFPQSYIYEIFSNM-NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN 343

Query: 272 LANLTNLQVLDLSDNQNLTTL 292
             +LT L+ L L  NQ L  L
Sbjct: 344 CGHLTELETLILQMNQ-LKEL 363

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 11/147 (7%)

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215
             +LN+  N+ ++     + +L+ L  LI+S N I+           + L+ LDLS N  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN-- 79

Query: 216 ITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA---KLKNLEALDLSYNYYIHSSLEGL 272
                L ++      NLK LDL       +        +  L+ L LS  +   SS+  +
Sbjct: 80  ----KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 273 ANLTNLQVLDLSDNQNLTTLGKPLNLR 299
           A+L   +VL L   +       P  L+
Sbjct: 136 AHLNISKVL-LVLGETYGEKEDPEGLQ 161

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 14/172 (8%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
           +   L++  N+ + ++ +       SL +L++L +  N      +        L  L LS
Sbjct: 22  KTTILNISQNYISELWTS----DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI- 245
            N +     K        L+ LDLS N    +  + +    N++ LK L L +  +    
Sbjct: 78  HNKL----VKISCHPTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLEKSS 131

Query: 246 -QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296
              +A L   + L +    Y     E    L +     L            +
Sbjct: 132 VLPIAHLNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFI 181

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 11/179 (6%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLN 175
           L++S+F   +EL+ LDL  N    I       S      LK L+L  N F+   I     
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKI-------SCHPTVNLKHLDLSFNAFDALPICKEFG 112

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
            ++ L  L LS   +E   +   +A+L   +VL + G           L   N  +L  +
Sbjct: 113 NMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 236 DLGSCGITTIQGLA--KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
              +     I  ++   + NLE  ++      +     L+ L  LQ      N  L  +
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 15/177 (8%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
            HP   L+ LDL  N F  +   +    FG++ QLK L L       S +  +  L    
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKE---FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC- 240
            L++   +       +GL +    + L +    N     +  + +  + NL+  ++    
Sbjct: 143 VLLVLGETYGEKEDPEGLQDF-NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

Query: 241 ----------GITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
                      +  +Q   KL NL   ++   +     +  L   T +    +S+ +
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 10/216 (4%)

Query: 82  WEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGI 141
           W+ +                +          S +   ++       +Q +DL  +     
Sbjct: 49  WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-- 106

Query: 142 YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA- 200
             +  +       +L+ L+L     +D I+  L   ++L  L LS  S       Q L  
Sbjct: 107 -VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165

Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC--GIT--TIQGLAK-LKNLE 255
           +   L  L+LS  F+ T   +          + +L+L      +    +  L +   NL 
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225

Query: 256 ALDLSYNYYIH-SSLEGLANLTNLQVLDLSDNQNLT 290
            LDLS +  +     +    L  LQ L LS   ++ 
Sbjct: 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.7 bits (134), Expect = 4e-09
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
              L S   +          +      +   +Q +DLS +  I   +L  + L+  + L+
Sbjct: 64  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGI-LSQCSKLQ 121

Query: 234 KLDLGSCGIT--TIQGLAKLKNLEALDLSYNYYIH-SSLEGLA-NLTNLQVLDLSDNQNL 289
            L L    ++   +  LAK  NL  L+LS        +L+ L  + + L  L+LS   + 
Sbjct: 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181

Query: 290 TTLG 293
           T   
Sbjct: 182 TEKH 185

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
           ++ QL +     N     +   +    +L  L LSD+ +  +   Q    L YLQ L LS
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255

Query: 212 GNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKL-KNLEALDLSYNYYIHSSLE 270
             ++I   +L    L  +  LK L +   GI     L  L + L  L ++ +++   +  
Sbjct: 256 RCYDIIPETLLE--LGEIPTLKTLQV--FGIVPDGTLQLLKEALPHLQINCSHFTTIARP 311

Query: 271 GLANLTNLQVLDL 283
            + N  N ++  +
Sbjct: 312 TIGNKKNQEIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 193 SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG---LA 249
            +        R L    ++     +          +   ++ +DL +  I        L+
Sbjct: 56  GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 115

Query: 250 KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
           +   L+ L L         +  LA  +NL  L+LS     +   
Sbjct: 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 3e-15
 Identities = 49/212 (23%), Positives = 74/212 (34%), Gaps = 12/212 (5%)

Query: 93  RVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGS 152
           RV+ +S  + +       +G+A    +    P  +L  L+L    +       A      
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGP--DLNILNLRNVSWATRDAWLAELQQWL 147

Query: 153 LKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG---LANLRYLQVLD 209
              LK+L++      +     +    +L+TL LSDN   G R             LQVL 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 210 LSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI---QGLAKLKNLEALDLSYNYYIH 266
           L      T   +     A    L+ LDL    +              L +L+LS+   + 
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLK 266

Query: 267 SSLEGLANLTNLQVLDLSDNQNLTTLGKPLNL 298
              +GL     L VLDLS N  L     P  L
Sbjct: 267 QVPKGL--PAKLSVLDLSYN-RLDRNPSPDEL 295

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 8e-14
 Identities = 36/193 (18%), Positives = 53/193 (27%), Gaps = 15/193 (7%)

Query: 101 ETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLN 160
             +     S +     L          L+ L +                      L  L+
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE----QVRVFPALSTLD 179

Query: 161 LGDNFFNDSI----LPYLNTLTSLTTLILSDNSIE--GSRTKQGLANLRYLQVLDLSGNF 214
           L DN                  +L  L L +  +E          A    LQ LDLS N 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN- 238

Query: 215 NITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLAN 274
           ++   +         + L  L+L   G+  +        L  LDLSYN  +         
Sbjct: 239 SL-RDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-GLPAKLSVLDLSYNR-L-DRNPSPDE 294

Query: 275 LTNLQVLDLSDNQ 287
           L  +  L L  N 
Sbjct: 295 LPQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 3e-13
 Identities = 30/154 (19%), Positives = 45/154 (29%), Gaps = 9/154 (5%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN---DSILPY 173
            +      F  L  LDL  N   G     +         L++L L +             
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
                 L  L LS NS+  +           L  L+LS         L ++       L 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT------GLKQVPKGLPAKLS 277

Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHS 267
            LDL    +       +L  +  L L  N ++ S
Sbjct: 278 VLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 31/155 (20%), Positives = 50/155 (32%), Gaps = 7/155 (4%)

Query: 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDL 210
           G      +L   D   +      +    SL  L +    I        L  L    + +L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 211 SGNFNITSGS-LTRLGLANLTNLKKLDLGSCGITTIQGLA------KLKNLEALDLSYNY 263
           +      +G+    L  A   +L  L+L +    T               L+ L ++  +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 264 YIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLNL 298
            ++ S E +     L  LDLSDN  L   G    L
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTS 179
           F  F ELQ LDL       I +     ++ SL  L  L L  N      L     + L+S
Sbjct: 48  FFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPI--QSLALGAFSGLSS 101

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGL-ANLTNLKKLDLG 238
           L  L+  + ++  S     + +L+ L+ L+++ N  I   S       +NLTNL+ LDL 
Sbjct: 102 LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQ--SFKLPEYFSNLTNLEHLDLS 157

Query: 239 SCGITTI-----QGLAKLKNLEA-LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
           S  I +I     + L ++  L   LDLS N  ++    G      L+ L L  NQ L ++
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 45/176 (25%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-N 175
           +    +     L  L L GN    +    A  +F  L  L+ L   +     S+  +   
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLA-SLENFPIG 121

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK-- 233
            L +L  L ++ N I+  +  +  +NL  L+ LDLS N  I S  +    L  L  +   
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQS--IYCTDLRVLHQMPLL 178

Query: 234 --KLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
              LDL    +  IQ G  K   L+ L L  N            LT+LQ + L  N
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 11/122 (9%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
            S   L LS N +    +     +   LQVLDLS    I +  +      +L++L  L L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRC-EIQT--IEDGAYQSLSHLSTLIL 83

Query: 238 GSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLA--NLTNLQVLDLSDNQNLTTLG 293
               I ++     + L +L+ L         +SLE     +L  L+ L+++ N  + +  
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNL-IQSFK 140

Query: 294 KP 295
            P
Sbjct: 141 LP 142

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 73.6 bits (181), Expect = 5e-15
 Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 40/198 (20%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSL-------KQLKMLNLGDNFFND----SILPYLN 175
           +L+  +     FTG  ++   ++   L        +L  + L DN F       ++ +L+
Sbjct: 61  DLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 176 TLTSLTTLILSDNSI------------EGSRTKQGLANLRYLQVLDLSGNFNITSGSLTR 223
             T L  L L +N +            +     +   N   L+ +    N  + +GS+  
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKE 178

Query: 224 LG--LANLTNLKKLDLGSCGITTI-------QGLAKLKNLEALDLSYNYYIH----SSL- 269
                 +   L  + +   GI          +GLA  + L+ LDL  N        S+L 
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA 237

Query: 270 EGLANLTNLQVLDLSDNQ 287
             L +  NL+ L L+D  
Sbjct: 238 IALKSWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 33/192 (17%)

Query: 128 LQRLDLPGNWFT---------GIYENRAYDSFGSLKQLKMLNLGDNFFND----SILPYL 174
           L+ L L  N             + E        +   L+ +  G N   +          
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 175 NTLTSLTTLILSDNSI--EGSRT--KQGLANLRYLQVLDLSGNFNITSGSLTRLG--LAN 228
            +   L T+ +  N I  EG      +GLA  + L+VLDL  N   T    + L   L +
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKS 242

Query: 229 LTNLKKLDLGSCGITTI------QGLAKLKN--LEALDLSYNYYIHSSLEGLA-----NL 275
             NL++L L  C ++           +KL+N  L+ L L YN     ++  L       +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 276 TNLQVLDLSDNQ 287
            +L  L+L+ N+
Sbjct: 303 PDLLFLELNGNR 314

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 40/197 (20%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND----------SILPYLNTL 177
           ++ + L GN           ++  S K L++    D F              +L  L   
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 178 TSLTTLILSDNSIEGSRTKQGLANL----RYLQVLDLSGNFNITSGSLTRLGLA------ 227
             L T+ LSDN+  G   ++ L +       L+ L L  N  +   +  ++  A      
Sbjct: 94  PKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAV 151

Query: 228 -----NLTNLKKLDLGSCGITTI------QGLAKLKNLEALDLSYNYYIHSS------LE 270
                N   L+ +  G   +         +     + L  + +  N  I         LE
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLE 210

Query: 271 GLANLTNLQVLDLSDNQ 287
           GLA    L+VLDL DN 
Sbjct: 211 GLAYCQELKVLDLQDNT 227

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 33/165 (20%)

Query: 156 LKMLNLGDNFFND----SILPYLNTLTSLTTLILSDNSI--EGSRT-KQGLANLRYLQVL 208
           ++  +L  +        S+   L    S+  ++LS N+I  E +R   + +A+ + L++ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 209 DLSGNFNITSGSLTRLG-------LANLTNLKKLDLGSCGITTI------QGLAKLKNLE 255
           + S  F                  L     L  + L                L+K   LE
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 256 ALDLSYNY-------------YIHSSLEGLANLTNLQVLDLSDNQ 287
            L L  N                 +  +   N   L+ +    N+
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 22/130 (16%)

Query: 179 SLTTLILSDNSIEGSRTK---QGLANLRYLQVLDLSGNFNITSGSLTRLG--LANLTNLK 233
           S+    L  ++I     K     L     ++ + LSGN  I + +   L   +A+  +L+
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLE 63

Query: 234 KLDLGSCGITTI------------QGLAKLKNLEALDLSYNYYIHSSLEGLANL----TN 277
             +        +            Q L K   L  + LS N +  ++ E L +     T 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 278 LQVLDLSDNQ 287
           L+ L L +N 
Sbjct: 124 LEHLYLHNNG 133

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 128 LQRLDLPGNWFT--GIYENRAYDSFGSLKQLKMLNLGDNFFND----SILPYLNTLTSLT 181
           L  + +  N     GI E+   +     ++LK+L+L DN F      ++   L +  +L 
Sbjct: 189 LHTVKMVQNGIRPEGI-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 182 TLILSDNSIEGSRTKQGLANL------RYLQVLDLSGNFNITSGSLTRLGLA---NLTNL 232
            L L+D  +  +R    + +         LQ L L  N  I   ++  L       + +L
Sbjct: 248 ELGLNDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDL 305

Query: 233 KKLDLGSCGIT 243
             L+L     +
Sbjct: 306 LFLELNGNRFS 316

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.0 bits (182), Expect = 5e-15
 Identities = 40/175 (22%), Positives = 59/175 (33%), Gaps = 27/175 (15%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              L +L    N  T +              L  L    N   +  L  +  LT LT L 
Sbjct: 63  LTGLTKLICTSNNITTL-------DLSQNTNLTYLACDSNKLTN--LD-VTPLTKLTYLN 112

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
              N +    TK  ++    L  L+ + N      +LT + +++ T L +LD       T
Sbjct: 113 CDTNKL----TKLDVSQNPLLTYLNCARN------TLTEIDVSHNTQLTELDCHLNKKIT 162

Query: 245 IQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV-------LDLSDNQNLTTL 292
              +     L  LD S+N      +     L  L         LDL+ N  LT L
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFL 217

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.9 bits (174), Expect = 6e-14
 Identities = 43/178 (24%), Positives = 60/178 (33%), Gaps = 27/178 (15%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
                 L  L+   N  T I             QL  L+   N         +   T LT
Sbjct: 123 VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLN--KKITKLDVTPQTQLT 173

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG 241
           TL  S N I    T+  ++  + L  L+   N      ++T+L L     L  LD  S  
Sbjct: 174 TLDCSFNKI----TELDVSQNKLLNRLNCDTN------NITKLDLNQNIQLTFLDCSSNK 223

Query: 242 ITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV-------LDLSDNQNLTTL 292
           +T I  +  L  L   D S N      +  L+ LT L         +DL+ N  L   
Sbjct: 224 LTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.1 bits (172), Expect = 8e-14
 Identities = 40/168 (23%), Positives = 58/168 (34%), Gaps = 23/168 (13%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              L  LD   +  T +           L  L  L    N      L  L+  T+LT L 
Sbjct: 41  LATLTSLDCHNSSITDM------TGIEKLTGLTKLICTSNNITT--LD-LSQNTNLTYLA 91

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
              N +    T   +  L  L  L+   N       LT+L ++    L  L+     +T 
Sbjct: 92  CDSNKL----TNLDVTPLTKLTYLNCDTN------KLTKLDVSQNPLLTYLNCARNTLTE 141

Query: 245 IQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
           I  ++    L  LD   N  I  +   +   T L  LD S N+ +T L
Sbjct: 142 ID-VSHNTQLTELDCHLNKKI--TKLDVTPQTQLTTLDCSFNK-ITEL 185

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.0 bits (164), Expect = 9e-13
 Identities = 42/177 (23%), Positives = 57/177 (32%), Gaps = 24/177 (13%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
            +      P  +L  LD   N  T +            K L  LN   N  N + L  LN
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITEL-------DVSQNKLLNRLNCDTN--NITKLD-LN 209

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
               LT L  S N +    T+  +  L  L   D S N       LT L ++ L+ L  L
Sbjct: 210 QNIQLTFLDCSSNKL----TEIDVTPLTQLTYFDCSVN------PLTELDVSTLSKLTTL 259

Query: 236 DLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
                 +  I  L     L          I      + + T L +LD      +T L
Sbjct: 260 HCIQTDLLEID-LTHNTQLIYFQAEGCRKI--KELDVTHNTQLYLLDCQAAG-ITEL 312

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 33/174 (18%), Positives = 48/174 (27%), Gaps = 22/174 (12%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             +L  L         I             QL                 +   T L  L 
Sbjct: 253 LSKLTTLHCIQTDLLEI-------DLTHNTQLIYFQAEGC--RKIKELDVTHNTQLYLLD 303

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
                I    T+  L+    L  L L+         LT L +++ T LK L   +  I  
Sbjct: 304 CQAAGI----TELDLSQNPKLVYLYLNNT------ELTELDVSHNTKLKSLSCVNAHIQD 353

Query: 245 IQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLNL 298
              + K+  L     +    I    E    LTN  +        L   G P+N+
Sbjct: 354 FSSVGKIPALNNNFEAEGQTITMPKE---TLTNNSLTIAVSPDLLDQFGNPMNI 404

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 33/144 (22%), Positives = 50/144 (34%), Gaps = 17/144 (11%)

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215
                        +       L +LT+L   ++SI       G+  L  L  L  + N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSN-- 74

Query: 216 ITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANL 275
               ++T L L+  TNL  L   S  +T +  +  L  L  L+   N      +     L
Sbjct: 75  ----NITTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

Query: 276 TNLQV-------LDLSDNQNLTTL 292
           T L         +D+S N  LT L
Sbjct: 130 TYLNCARNTLTEIDVSHNTQLTEL 153

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDL 259
            N                  +   +    L  L  LD  +  IT + G+ KL  L  L  
Sbjct: 18  DNFASEVAAAFEMQ------ATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLIC 71

Query: 260 SYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
           + N    ++L+ L+  TNL  L    N+ LT L
Sbjct: 72  TSNNI--TTLD-LSQNTNLTYLACDSNK-LTNL 100

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 17/179 (9%)

Query: 122 FHPFEELQRLDLPGNW-FTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLNTLTS 179
           F     + R+ +  +     +  +    SF +L ++  + + +      I P  L  L  
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN-LKKLDLG 238
           L  L + +  ++       + +     +L+++ N  +T  S+       L N    L L 
Sbjct: 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT--SIPVNAFQGLCNETLTLKLY 164

Query: 239 SCGITTIQGLA-KLKNLEALDLSYNYYIHS----SLEGLANLTNLQVLDLSDNQNLTTL 292
           + G T++QG A     L+A+ L+ N Y+      +  G+   +   +LD+S    +T L
Sbjct: 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV--YSGPSLLDVSQTS-VTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 52/167 (31%)

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---------GSLTRLGLA 227
             S  TL L +  +  +      +NL  +  + +S +  +             +T + + 
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 228 N--------------LTNLKKLDLGSCGITTIQGLAKLKNLEA---LDLSYNYYIHS--- 267
           N              L  LK L + + G+     L K+ + +    L+++ N Y+ S   
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 268 -SLEGLANL---------------------TNLQVLDLSDNQNLTTL 292
            + +GL N                      T L  + L+ N+ LT +
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVI 195

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 16/150 (10%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           ++         L+ L +      G+          S     +L + DN +  SI    N 
Sbjct: 96  IDPDALKELPLLKFLGIFNT---GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV--NA 150

Query: 177 LTSLT----TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANL-TN 231
              L     TL L +N    +  +    N   L  + L+ N  +T   + +     + + 
Sbjct: 151 FQGLCNETLTLKLYNNGF--TSVQGYAFNGTKLDAVYLNKNKYLTV--IDKDAFGGVYSG 206

Query: 232 LKKLDLGSCGITTIQ--GLAKLKNLEALDL 259
              LD+    +T +   GL  LK L A + 
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 30/176 (17%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
            L+ L    N  T + E        SLK L + N      +D           L  L +S
Sbjct: 92  HLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLKALSDLP-------PLLEYLGVS 139

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ 246
           +N +E       L N  +L+++D+  N      SL +L      +L+ +  G+  +  + 
Sbjct: 140 NNQLE---KLPELQNSSFLKIIDVDNN------SLKKL-PDLPPSLEFIAAGNNQLEELP 189

Query: 247 GLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
            L  L  L A+    N     SL+ L     +L+ +   +N    L  L     L 
Sbjct: 190 ELQNLPFLTAIYADNN-----SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 240

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 27/168 (16%)

Query: 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLIL 185
             L+ L +  N    +          +   LK++++ +N      LP  +   SL  +  
Sbjct: 131 PLLEYLGVSNNQLEKL------PELQNSSFLKIIDVDNNSL--KKLP--DLPPSLEFIAA 180

Query: 186 SDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI 245
            +N +E       L NL +L  +    N      SL +L      +L+ +  G+  +  +
Sbjct: 181 GNNQLE---ELPELQNLPFLTAIYADNN------SLKKLP-DLPLSLESIVAGNNILEEL 230

Query: 246 QGLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTTL 292
             L  L  L  +    N      L+ L     +L+ L++ DN  LT L
Sbjct: 231 PELQNLPFLTTIYADNN-----LLKTLPDLPPSLEALNVRDNY-LTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 28/182 (15%), Positives = 54/182 (29%), Gaps = 41/182 (22%)

Query: 148 DSFGSLKQLKMLNLGDNFFNDSILPYL-------------NTLTSLTTLILSDNSIEGSR 194
               ++K         + +  +  P                       L L++  +    
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS--- 84

Query: 195 TKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGLANL---------TNLKKLDLGSC 240
                    +L+ L  S N ++T       SL  L + N            L+ L + + 
Sbjct: 85  --SLPELPPHLESLVASCN-SLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 141

Query: 241 GITTIQGLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQ--NLTTLGKPLN 297
            +  +  L     L+ +D+  N     SL+ L     +L+ +   +NQ   L  L     
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNN-----SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPF 196

Query: 298 LR 299
           L 
Sbjct: 197 LT 198

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 33/176 (18%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              L  L+   N    +              L+ LN+ +N      LP       L  LI
Sbjct: 296 PPNLYYLNASSNEIRSL--------CDLPPSLEELNVSNNKL--IELP--ALPPRLERLI 343

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGLAN--------LTN 231
            S N +  +   +   NL+    L +  N  +        S+  L + +          N
Sbjct: 344 ASFNHL--AEVPELPQNLK---QLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQN 397

Query: 232 LKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           LK+L + +  +     +   +++E L ++    +            L+      + 
Sbjct: 398 LKQLHVETNPLREFPDI--PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 170 ILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN----------FNITSG 219
           I P   + T L   +   +++          N++       + +                
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 220 SLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ 279
           +++RL         +L+L + G++++       +LE+L  S N  +    E   +L +L 
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLP--ELPPHLESLVASCN-SLTELPELPQSLKSLL 117

Query: 280 VLDLSDNQ 287
           V + +   
Sbjct: 118 VDNNNLKA 125

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 33/203 (16%), Positives = 63/203 (31%), Gaps = 55/203 (27%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
           L+ L++  N+ T + E          + L  L++ +N F+   L  L    +L  L  S 
Sbjct: 259 LEALNVRDNYLTDLPE--------LPQSLTFLDVSENIFSG--LSEL--PPNLYYLNASS 306

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGLAN---------LTNLK 233
           N I              L+ L++S N  +         L RL  +            NLK
Sbjct: 307 NEIR-----SLCDLPPSLEELNVSNN-KLIELPALPPRLERLIASFNHLAEVPELPQNLK 360

Query: 234 KLDLGSCGITTIQGL-----------------AKLKNLEALDLSYNYYIHSSLEGL-ANL 275
           +L +    +     +                    +NL+ L +  N      L       
Sbjct: 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-----LREFPDIP 415

Query: 276 TNLQVLDLSDNQNLTTLGKPLNL 298
            +++ L ++  + +         
Sbjct: 416 ESVEDLRMNSERVVDPYEFAHET 438

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.7 bits (173), Expect = 7e-14
 Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 36/182 (19%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
              LQ L +  N    +             +L  L   +N      LP L   + L  L 
Sbjct: 140 PPGLQELSVSDNQLASLPA--------LPSELCKLWAYNNQLTS--LPML--PSGLQELS 187

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGLAN---------LT 230
           +SDN +  +      + L  L   +      +TS       L  L ++           +
Sbjct: 188 VSDNQL--ASLPTLPSELYKLWAYNN----RLTSLPALPSGLKELIVSGNRLTSLPVLPS 241

Query: 231 NLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290
            LK+L +    +T++  L     L +L +  N  +    E L +L++   ++L  N  L+
Sbjct: 242 ELKELMVSGNRLTSLPML--PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP-LS 297

Query: 291 TL 292
             
Sbjct: 298 ER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.8 bits (168), Expect = 3e-13
 Identities = 42/182 (23%), Positives = 64/182 (35%), Gaps = 41/182 (22%)

Query: 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLIL 185
             L +L + GN  T +              L+ L++ DN      LP L   + L  L  
Sbjct: 121 SGLCKLWIFGNQLTSLPV--------LPPGLQELSVSDNQLAS--LPAL--PSELCKLWA 168

Query: 186 SDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGLAN---------LTN 231
            +N +              LQ L +S N  + S       L +L   N          + 
Sbjct: 169 YNNQLT-----SLPMLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSG 222

Query: 232 LKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLT 290
           LK+L +    +T++  L     L+ L +S N      L  L    + L  L +  NQ LT
Sbjct: 223 LKELIVSGNRLTSLPVL--PSELKELMVSGNR-----LTSLPMLPSGLLSLSVYRNQ-LT 274

Query: 291 TL 292
            L
Sbjct: 275 RL 276

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.3 bits (159), Expect = 5e-12
 Identities = 35/166 (21%), Positives = 56/166 (33%), Gaps = 32/166 (19%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
              L++  +  T + +            +  L + DN      LP       L TL +S 
Sbjct: 42  NAVLNVGESGLTTLPDC-------LPAHITTLVIPDNNLTS--LP--ALPPELRTLEVSG 90

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG 247
           N +  +        L  L +             L  L     + L KL +    +T++  
Sbjct: 91  NQL--TSLPVLPPGLLELSIFSNPLT------HLPAL----PSGLCKLWIFGNQLTSLPV 138

Query: 248 LAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTTL 292
           L     L+ L +S N      L  L A  + L  L   +NQ LT+L
Sbjct: 139 L--PPGLQELSVSDN-----QLASLPALPSELCKLWAYNNQ-LTSL 176

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 28/143 (19%)

Query: 153 LKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSG 212
                +LN+G++      LP       +TTL++ DN++         A    L+ L++SG
Sbjct: 39  NNGNAVLNVGESGLTT--LP-DCLPAHITTLVIPDNNL-----TSLPALPPELRTLEVSG 90

Query: 213 NFNITSGSLTRL--GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLE 270
           N       LT L      L  L         +  +        L  L +  N      L 
Sbjct: 91  N------QLTSLPVLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGN-----QLT 134

Query: 271 GL-ANLTNLQVLDLSDNQNLTTL 292
            L      LQ L +SDNQ L +L
Sbjct: 135 SLPVLPPGLQELSVSDNQ-LASL 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 33/189 (17%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             EL +L    N  T +              L+ L++ DN      LP     + L  L 
Sbjct: 160 PSELCKLWAYNNQLTSLPM--------LPSGLQELSVSDNQLAS--LP--TLPSELYKLW 207

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-----GSLTRLGLAN---------LT 230
             +N +         A    L+ L +SGN  +TS       L  L ++           +
Sbjct: 208 AYNNRLT-----SLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPMLPS 261

Query: 231 NLKKLDLGSCGITTI-QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289
            L  L +    +T + + L  L +   ++L  N     +L+ L  +T+         +  
Sbjct: 262 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

Query: 290 TTLGKPLNL 298
                    
Sbjct: 322 MAGASAPRE 330

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 221 LTRLGLANLTNLKKLDLGSCGITTI-QGLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNL 278
           + ++          L++G  G+TT+   L    ++  L +  N     +L  L A    L
Sbjct: 31  VQKMRACLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDN-----NLTSLPALPPEL 83

Query: 279 QVLDLSDNQNLTTL 292
           + L++S NQ LT+L
Sbjct: 84  RTLEVSGNQ-LTSL 96

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 20/185 (10%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN------ 175
                 +  LDL GN F      + +    +  +++ L L +++   S   + N      
Sbjct: 208 PFKNTSITTLDLSGNGFKES-MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 176 ------TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANL 229
                   + + T  LS + I  +  K   ++   L+ L L+ N  I    +       L
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQN-EINK--IDDNAFWGL 322

Query: 230 TNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           T+L KL+L    + +I       L  LE LDLSYN+      +    L NL+ L L  NQ
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382

Query: 288 NLTTL 292
            L ++
Sbjct: 383 -LKSV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 43/186 (23%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--L 174
           LN + F   ++LQ L +              ++F  L  L +L L  N F    L     
Sbjct: 45  LNETSFSRLQDLQFLKVEQQ---TPGLVIRNNTFRGLSSLIILKLDYNQF--LQLETGAF 99

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGL-ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
           N L +L  L L+  +++G+         L  L++L L  N NI           N+    
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASF-FLNMRRFH 157

Query: 234 KLDLGSCGITTIQGLA----KLKNLEALDLSYNYYIHSSLEGLA--------NLTNLQVL 281
            LDL    + +I        + K+   L LS       +   L           T++  L
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217

Query: 282 DLSDNQ 287
           DLS N 
Sbjct: 218 DLSGNG 223

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
             +  + LS NSI     +   + L+ LQ L +          +       L++L  L L
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGL--VIRNNTFRGLSSLIILKL 86

Query: 238 GSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEG--LANLTNLQVLDLSDNQNLTTL 292
                  ++      L NLE L L+      + L G     LT+L++L L DN  +  +
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKI 144

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 14/139 (10%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLIL 185
           ++  DL  +    + ++     F     L+ L L  N  N   +       LT L  L L
Sbjct: 277 VKTCDLSKSKIFALLKS----VFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNL 330

Query: 186 SDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI 245
           S N + GS   +   NL  L+VLDLS N +I +  L       L NLK+L L +  + ++
Sbjct: 331 SQNFL-GSIDSRMFENLDKLEVLDLSYN-HIRA--LGDQSFLGLPNLKELALDTNQLKSV 386

Query: 246 QG--LAKLKNLEALDLSYN 262
                 +L +L+ + L  N
Sbjct: 387 PDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 9e-10
 Identities = 48/227 (21%), Positives = 75/227 (33%), Gaps = 51/227 (22%)

Query: 113 SALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-------- 164
              +L+ + F P   L+ L L  N    I        F ++++  +L+L  N        
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF---FLNMRRFHVLDLTFNKVKSICEE 172

Query: 165 ---FFNDSILPYLN-----------------------TLTSLTTLILSDNSIEGSRTKQ- 197
               F       L                          TS+TTL LS N  + S  K+ 
Sbjct: 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232

Query: 198 -GLANLRYLQVLDLSGNFNITSG-------SLTRLGLANL--TNLKKLDLGSCGITTIQG 247
                   +Q L LS ++N+ S                 L  + +K  DL    I  +  
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292

Query: 248 --LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
              +   +LE L L+ N            LT+L  L+LS N  L ++
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSI 338

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 15/182 (8%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLN 175
           +    F  F +L+++++  N    + E      F +L +L  + +        I P    
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPKLHEIRIEKANNLLYINPEAFQ 101

Query: 176 TLTSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT-NL 232
            L +L  L++S+  I+      K        L   D+  N NI +  + R     L+   
Sbjct: 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL---DIQDNINIHT--IERNSFVGLSFES 156

Query: 233 KKLDLGSCGITTIQGLA-KLKNLEALDLSYNYYIHSSLEG-LANLTNLQVLDLSDNQNLT 290
             L L   GI  I   A     L+ L+LS N  +           +   +LD+S  + + 
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IH 215

Query: 291 TL 292
           +L
Sbjct: 216 SL 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 37/172 (21%), Positives = 55/172 (31%), Gaps = 20/172 (11%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSL 180
            F     LQ L +       + +           Q  +L++ DN    +I    N+   L
Sbjct: 99  AFQNLPNLQYLLISNTGIKHLPD----VHKIHSLQKVLLDIQDNINIHTIER--NSFVGL 152

Query: 181 T----TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
           +     L L+ N I+         N   L  L+LS N N+    L        +    LD
Sbjct: 153 SFESVILWLNKNGIQEIHN--SAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILD 208

Query: 237 LGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
           +    I ++   GL  LK L A            L  L  L  L    L+  
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNL----KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 8/122 (6%)

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
           +   +   L      +     K   +    L+ +++S N ++    +     +NL  L +
Sbjct: 27  DLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQN-DVLE-VIEADVFSNLPKLHE 83

Query: 235 LDL-GSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLT 290
           + +  +  +  I       L NL+ L +S    I    +    +     +LD+ DN N+ 
Sbjct: 84  IRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 291 TL 292
           T+
Sbjct: 143 TI 144

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 64.7 bits (158), Expect = 8e-13
 Identities = 30/134 (22%), Positives = 45/134 (33%), Gaps = 16/134 (11%)

Query: 158 MLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNIT 217
           M+ L       +             L L    I     +   A L     +D S N    
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDN---- 52

Query: 218 SGSLTRL-GLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHS--SLEGL 272
              + +L G   L  LK L + +  I  I       L +L  L L+ N  +     L+ L
Sbjct: 53  --EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPL 109

Query: 273 ANLTNLQVLDLSDN 286
           A+L +L  L +  N
Sbjct: 110 ASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           L+   I          N    + LDL G   I    +  LG A L     +D     I  
Sbjct: 4   LTAELI---EQAAQYTNAVRDRELDLRGY-KIPV--IENLG-ATLDQFDAIDFSDNEIRK 56

Query: 245 IQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           + G   L+ L+ L ++ N            L +L  L L++N 
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 17/139 (12%)

Query: 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLIL 185
              + LDL G     I EN       +L Q   ++  DN      L     L  L TL++
Sbjct: 19  VRDRELDLRGYKIPVI-ENLG----ATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLV 71

Query: 186 SDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS-GSLTRLGLANLTNLKKLDLGSCGITT 244
           ++N I     +     L  L  L L+ N ++   G L  L  A+L +L  L +    +T 
Sbjct: 72  NNNRIC-RIGEGLDQALPDLTELILTNN-SLVELGDLDPL--ASLKSLTYLCILRNPVTN 127

Query: 245 IQG-----LAKLKNLEALD 258
            +      + K+  +  LD
Sbjct: 128 KKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSL 180
           L    ++   +D   N    +      D F  L++LK L + +N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLG-LANLTNLKKLD 236
           T LIL++NS+        LA+L+ L  L +  N  +T+    RL  +  +  ++ LD
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 235 LDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQ 287
           + L +  I              LDL         +E L A L     +D SDN+
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYK--IPVIENLGATLDQFDAIDFSDNE 53

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 41/188 (21%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             ++  L++  N    + E            L+ L+  DN  +   LP      SL  L 
Sbjct: 79  PPQITVLEITQNALISLPE--------LPASLEYLDACDNRLST--LP--ELPASLKHLD 126

Query: 185 LSDNSIEGSRTKQGL-ANLRYLQVLDLSGNFNITS-----GSLTRLGLAN---------L 229
           + +N +        L      L+ ++   N  +T       SL  L + N          
Sbjct: 127 VDNNQLTM------LPELPALLEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPELP 179

Query: 230 TNLKKLDLGSCGITTI-QGLAKLKNLE----ALDLSYNYYIHSSLEGLANLTNLQVLDLS 284
            +L+ LD+ +  + ++     +  + E          N  I    E + +L     + L 
Sbjct: 180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILE 238

Query: 285 DNQNLTTL 292
           DN  L++ 
Sbjct: 239 DNP-LSSR 245

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.8 bits (147), Expect = 1e-10
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 19/145 (13%)

Query: 153 LKQLKMLNLGDNFFNDSILP----YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL 208
           L      +L  N F ++I      Y +         L   +   + +      +     L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSS 268
            L+        +L+ L       +  L++    + ++       +LE LD   N      
Sbjct: 65  QLNRL------NLSSLPDNLPPQITVLEITQNALISL--PELPASLEYLDACDN-----R 111

Query: 269 LEGL-ANLTNLQVLDLSDNQNLTTL 292
           L  L     +L+ LD+ +NQ LT L
Sbjct: 112 LSTLPELPASLKHLDVDNNQ-LTML 135

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP---- 172
           ++M           L+   N FT            +LK+L+ L L  N            
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRNGL--KNFFKVAL 397

Query: 173 YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNL 232
               ++SL TL +S NS+      +  A    + VL+LS N  +T      L       +
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCL----PPKV 452

Query: 233 KKLDLGSCGITTI-QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
           K LDL +  I +I + +  L+ L+ L+++ N            LT+LQ + L DN
Sbjct: 453 KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.9 bits (158), Expect = 7e-12
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 8/169 (4%)

Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTS 179
           +L+  F E+    L  +    I+         S      LN   N F DS+    +TL  
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMV----CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 180 LTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLG 238
           L TLIL  N ++   +      N+  L+ LD+S N ++ S +  R   A   ++  L+L 
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRT-CAWAESILVLNLS 436

Query: 239 SCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
           S  +T          ++ LDL  N  I S  + + +L  LQ L+++ NQ
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ 484

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 26/178 (14%), Positives = 50/178 (28%), Gaps = 9/178 (5%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL---T 178
            +    LQ  ++  N                   L  + L            L       
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 179 SLTTLILSDNSIEGSRTKQGLAN----LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234
            +  L + + +I     ++        L+ L +  +     + S        A + N+K 
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM-NIKM 335

Query: 235 LDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
           L +       +       +   L+ + N +  S  +G + L  LQ L L  N  L   
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNF 392

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 12/87 (13%)

Query: 205 LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA--KLKNLEALDLSYN 262
            + L LS N +I+   L    ++ L+ L+ L L    I ++        ++LE LD+S+N
Sbjct: 54  TKALSLSQN-SISE--LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110

Query: 263 YYIHSSLEGL--ANLTNLQVLDLSDNQ 287
                 L+ +    + +L+ LDLS N 
Sbjct: 111 -----RLQNISCCPMASLRHLDLSFND 132

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 8e-07
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
                L LS NSI        ++ L  L+VL LS N  I   SL         +L+ LD+
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHN-RIR--SLDFHVFLFNQDLEYLDV 107

Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQ 287
               +  I     + +L  LDLS+N +    +     NLT L  L LS  +
Sbjct: 108 SHNRLQNIS-CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 35/170 (20%), Positives = 56/170 (32%), Gaps = 26/170 (15%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLIL 185
            + L L  N  + +           L +L++L L  N      L +        L  L +
Sbjct: 54  TKALSLSQNSISELRMP----DISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDV 107

Query: 186 SDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLA----NLTNLKKLDLGSCG 241
           S N +           +  L+ LDLS N          L +     NLT L  L L +  
Sbjct: 108 SHNRL----QNISCCPMASLRHLDLSFN------DFDVLPVCKEFGNLTKLTFLGLSAAK 157

Query: 242 ITTIQGLAKLKNLEALDLSYN---YYIHSSLEGLANLTNLQVLDLSDNQN 288
              +  L  + +L    +  +   Y+I         + N  VL L  + N
Sbjct: 158 FRQLD-LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 15/178 (8%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLN 175
           L+  +F   ++L+ LD+  N    I       S   +  L+ L+L  N F+   +     
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQNI-------SCCPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235
            LT LT L LS         +  L  + +L +  +  +               + N   L
Sbjct: 144 NLTKLTFLGLSAAKF----RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 236 DLGSCGITTIQGLA--KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTT 291
            L     +         +  L  L LS       + + L    + ++       N+T 
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS-ELTRGPTLLNVTL 256

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 9/174 (5%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           L M       EL+ L L  N    +        F   + L+ L++  N      +     
Sbjct: 67  LRMPDISFLSELRVLRLSHNRIRSLDF----HVFLFNQDLEYLDVSHNRL--QNISCCP- 119

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF--NITSGSLTRLGLANLTNLKK 234
           + SL  L LS N  +     +   NL  L  L LS      +    +  L L+ +     
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 235 LDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN 288
                 G T    +     L  +    + +       +  L +LQ+ ++  N  
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
             P   L+ LDL  N F  +   +    FG+L +L  L L    F    L  +  L  L+
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKE---FGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLS 172

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL---- 237
            ++L   S      +     +    VL L  + N        + +  L +L+  ++    
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 238 -----GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
                    ++ +     L N+    +   +     L        ++ L++ +  
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 42/200 (21%), Positives = 62/200 (31%), Gaps = 23/200 (11%)

Query: 110 GSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169
           G      L   L HP   L+ L +     T            + + LK L+L  N   D 
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 170 ILPYL-----NTLTSLTTLILSDNSIEGSRTK---QGLANLRYLQVLDLSGNFNITSGSL 221
               L          L +L +   S   +        LA  R+L  L +S N  +    +
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGV 358

Query: 222 TRLGLA---NLTNLKKLDLGSCGITTI------QGLAKLKNLEALDLSYNYYIHSSLEGL 272
             L        + L+ L L  C ++          L    +L  LDLS N    + +  L
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418

Query: 273 A-----NLTNLQVLDLSDNQ 287
                     L+ L L D  
Sbjct: 419 VESVRQPGCLLEQLVLYDIY 438

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 38/211 (18%), Positives = 62/211 (29%), Gaps = 52/211 (24%)

Query: 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND----SILPYLNTLTSLT 181
            ++Q LD+     +   + R  +    L+Q +++ L D    +     I   L    +L 
Sbjct: 3   LDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 182 TLILSDNSIEGSRTK--------------------------------QGLANLRYLQVLD 209
            L L  N +                                        L  L  LQ L 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 210 LSGNFNITSG--SLTRLGLANLTNLKKLDLGSCGITTI------QGLAKLKNLEALDLSY 261
           LS N    +G   L    L     L+KL L  C ++          L    + + L +S 
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 262 NYYIHSSLEGLA-----NLTNLQVLDLSDNQ 287
           N    + +  L      +   L+ L L    
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCG 210

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 42/228 (18%), Positives = 71/228 (31%), Gaps = 51/228 (22%)

Query: 110 GSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169
           G     LL   L  P   L++L L     +            +    K L + +N  N++
Sbjct: 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185

Query: 170 ILPYL-----NTLTSLTTLILSDNSI--EGSRT-KQGLANLRYLQVLDLSGNFNITSGSL 221
            +  L     ++   L  L L    +  +  R     +A+   L+ L L  N  +    +
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGM 244

Query: 222 TRLGLANL---TNLKKLDLGSCGITTI------QGLAKLKNLEALDLSYNY--------- 263
             L    L   + L+ L +  CGIT        + L   ++L+ L L+ N          
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304

Query: 264 -----YIHSSL-------------------EGLANLTNLQVLDLSDNQ 287
                     L                     LA    L  L +S+N+
Sbjct: 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 46/228 (20%), Positives = 68/228 (29%), Gaps = 51/228 (22%)

Query: 110 GSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169
                 +L   L     +L+ L L     T            S   L+ L LG N   D 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 170 ILPYL-----NTLTSLTTLILSDNSI--EGSRT-KQGLANLRYLQVLDLSGNFNITSGSL 221
            +  L     +  + L TL + +  I  +G     + L     L+ L L+GN  +     
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGA 301

Query: 222 TRLGLA---NLTNLKKLDLGSCGITTI------QGLAKLKNLEALDLSYNY--------- 263
             L          L+ L + SC  T          LA+ + L  L +S N          
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 264 -----YIHSSLE-------------------GLANLTNLQVLDLSDNQ 287
                   S L                     L    +L+ LDLS+N 
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 24/166 (14%)

Query: 97  LSLNETIK----FNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGS 152
           L   E++K         G   A LL  +L  P  +L+ L +    FT          F S
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT----AACCSHFSS 335

Query: 153 L----KQLKMLNLGDNFFNDSILPYL-----NTLTSLTTLILSDNSI--EGSRT-KQGLA 200
           +    + L  L + +N   D+ +  L        + L  L L+D  +      +    L 
Sbjct: 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395

Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLA---NLTNLKKLDLGSCGIT 243
               L+ LDLS N  +    + +L  +       L++L L     +
Sbjct: 396 ANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 20/167 (11%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLIL 185
            ++LDL  N  + +       +F  L +L++L L DN      LP      L +L TL +
Sbjct: 39  TKKLDLQSNKLSSLPSK----AFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWV 92

Query: 186 SDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT 243
           +DN ++         L NL     L L  N  + S  L      +LT L  L LG   + 
Sbjct: 93  TDNKLQALPIGVFDQLVNL---AELRLDRN-QLKS--LPPRVFDSLTKLTYLSLGYNELQ 146

Query: 244 TIQGLA--KLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQ 287
           ++      KL +L+ L L  N  +    EG    LT L+ L L +NQ
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ 192

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 7e-12
 Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 18/171 (10%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP--YLNTLTS 179
           FH   +L+ L L  N    +        F  LK L+ L + DN      LP    + L +
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPAG----IFKELKNLETLWVTDNKL--QALPIGVFDQLVN 110

Query: 180 LTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
           L  L L  N ++    R    L  L Y   L L  N  +   SL +     LT+LK+L L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTY---LSLGYN-ELQ--SLPKGVFDKLTSLKELRL 164

Query: 238 GSCGITTIQGLA--KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
            +  +  +   A  KL  L+ L L  N           +L  L++L L +N
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL--GL-ANLTNLKK 234
                L L  N +  S   +    L  L++L L+ N       L  L  G+   L NL+ 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDN------KLQTLPAGIFKELKNLET 89

Query: 235 LDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTT 291
           L +    +  +      +L NL  L L  N  + S    +  +LT L  L L  N+ L +
Sbjct: 90  LWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE-LQS 147

Query: 292 L 292
           L
Sbjct: 148 L 148

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 177 LTSLTTLILSDNSIEGSRTKQGL-----ANLRYLQVLDLSGNFNITSGSLTRLGLANLTN 231
           LT L  L L+DN +      Q L       L+ L+ L ++ N  + +  L       L N
Sbjct: 60  LTKLRLLYLNDNKL------QTLPAGIFKELKNLETLWVTDN-KLQA--LPIGVFDQLVN 110

Query: 232 LKKLDLGSCGITTIQGLA--KLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQN 288
           L +L L    + ++       L  L  L L YN  + S  +G+   LT+L+ L L +NQ 
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ- 168

Query: 289 LTTL 292
           L  +
Sbjct: 169 LKRV 172

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 61.2 bits (149), Expect = 8e-12
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLKK 234
           T + +  L+L ++     + +        L+ L            LT +  L  L  LKK
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV------GLTSIANLPKLNKLKK 68

Query: 235 LDLGSCGITTIQGL--AKLKNLEALDLSYNYYIH-SSLEGLANLTNLQVLDLSDN 286
           L+L    ++    +   K  NL  L+LS N     S++E L  L NL+ LDL + 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 190 IEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA 249
           I      +  ++++ L VLD S +       L          L+ L   + G+T+I  L 
Sbjct: 7   IHLELRNRTPSDVKEL-VLDNSRSNEGKLEGL----TDEFEELEFLSTINVGLTSIANLP 61

Query: 250 KLKNLEALDLSYNYYIHSSLEGLA-NLTNLQVLDLSDNQ 287
           KL  L+ L+LS N  +   LE LA    NL  L+LS N+
Sbjct: 62  KLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNK 99

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 13/139 (9%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
             +++ L L  +      E +        ++L+ L+  +       +  L  L  L  L 
Sbjct: 16  PSDVKELVLDNS---RSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLE 70

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           LSDN + G            L  L+LSGN      ++  L    L NLK LDL +C +T 
Sbjct: 71  LSDNRVSGGLEVLA-EKCPNLTHLNLSGNKIKDLSTIEPL--KKLENLKSLDLFNCEVTN 127

Query: 245 IQG-----LAKLKNLEALD 258
           +          L  L  LD
Sbjct: 128 LNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 8/129 (6%)

Query: 109 SGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND 168
             S S       L   FEEL+ L       T I       +   L +LK L L DN  + 
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSG 78

Query: 169 SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLG-LA 227
            +        +LT L LS N I+   T + L  L  L+ LDL     +T+ +  R     
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFK 137

Query: 228 NLTNLKKLD 236
            L  L  LD
Sbjct: 138 LLPQLTYLD 146

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLKK 234
           T  ++  L+L +      + +   A    L+ L L          L  +  L  L  LKK
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV------GLISVSNLPKLPKLKK 75

Query: 235 LDLGSCGITTIQGL--AKLKNLEALDLSYNYYIH-SSLEGLANLTNLQVLDLSDN 286
           L+L    I     +   KL NL  L+LS N     S+LE L  L  L+ LDL + 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 58.6 bits (142), Expect = 8e-11
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 190 IEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA 249
           I      +  A +R L VLD   + +     L     A   NL+ L L + G+ ++  L 
Sbjct: 14  IHLELRNRTPAAVREL-VLDNCKSNDGKIEGL----TAEFVNLEFLSLINVGLISVSNLP 68

Query: 250 KLKNLEALDLSYNYYIHSSLEGLA-NLTNLQVLDLSDNQ 287
           KL  L+ L+LS N  I   L+ LA  L NL  L+LS N+
Sbjct: 69  KLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNK 106

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 13/143 (9%)

Query: 152 SLKQLKMLNLGDNFFND-SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDL 210
           +   ++ L L +   ND  I        +L  L L +  +    +   L  L  L+ L+L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKKLEL 78

Query: 211 SGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT---TIQGLAKLKNLEALDLSYN---YY 264
           S N  I  G    +    L NL  L+L    +    T++ L KL+ L++LDL        
Sbjct: 79  SEN-RIFGGL--DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

Query: 265 IHSSLEGLANLTNLQVLDLSDNQ 287
                     L  L  LD  D +
Sbjct: 136 NDYRESVFKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 32/129 (24%), Positives = 46/129 (35%), Gaps = 8/129 (6%)

Query: 109 SGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND 168
               S       L   F  L+ L L       +       +   L +LK L L +N    
Sbjct: 32  DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFG 85

Query: 169 SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLG-LA 227
            +      L +LT L LS N ++   T + L  L  L+ LDL     +T+ +  R     
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFK 144

Query: 228 NLTNLKKLD 236
            L  L  LD
Sbjct: 145 LLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDL 210
                L+ L+L +       +  L  L  L  L LS+N I G         L  L  L+L
Sbjct: 46  AEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLTHLNL 102

Query: 211 SGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-----LAKLKNLEALD 258
           SGN      +L  L    L  LK LDL +C +T +          L  L  LD
Sbjct: 103 SGNKLKDISTLEPL--KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.3 bits (148), Expect = 6e-11
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA--KLKNL 254
             L     L  L +    ++    L    L  L  L+ L +   G+  +   A      L
Sbjct: 25  HHLPGAENLTELYIENQQHLQH--LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 255 EALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
             L+LS+N  + S         +LQ L LS N
Sbjct: 83  SRLNLSFN-ALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 242 ITTIQGLAKLKNLEALDLSYNYYIHS-SLEGLANLTNLQVLDLSDNQ 287
           + ++  L   +NL  L +    ++    L  L  L  L+ L +  + 
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 39/205 (19%), Positives = 70/205 (34%), Gaps = 29/205 (14%)

Query: 110 GSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNFFND 168
              S+  L  +L      +  LDL  N F+    +    +F +L   +  LNL  N    
Sbjct: 93  SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152

Query: 169 SILPYL-----NTLTSLTTLILSDNSIEGSRTKQGLANL-----RYLQVLDLSGNFNITS 218
                L         ++ +L L  N++  S+    LA         +  LDLS N  +  
Sbjct: 153 KSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSAN-LLGL 210

Query: 219 GSLTRLGLA---NLTNLKKLDLGSCGITT------IQGLAKLKNLEALDLSYNYYIHSSL 269
            S   L         ++  L+L    +              LK+L+ + L Y+   + S 
Sbjct: 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270

Query: 270 EG-------LANLTNLQVLDLSDNQ 287
           E          N+  + ++D +  +
Sbjct: 271 EQCKALGAAFPNIQKIILVDKNGKE 295

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 36/208 (17%)

Query: 110 GSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSL-----KQLKMLNLGDN 164
            S S + L  +  +    +  L+L GN        +  D    +       +  LNL  N
Sbjct: 35  YSISTVELIQAFANTPASVTSLNLSGNSLG----FKNSDELVQILAAIPANVTSLNLSGN 90

Query: 165 FFNDSILPYL-----NTLTSLTTLILSDNSIEGSRTKQGLANL-----RYLQVLDLSGNF 214
           F +      L         ++T L L  N    S++              +  L+L GN 
Sbjct: 91  FLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGN- 148

Query: 215 NITSGSLTRLGLA---NLTNLKKLDLGSCGITTI--QGLAKL-----KNLEALDLSYNYY 264
           ++   S   L         N+  L+L    + +     LAK       ++ +LDLS N  
Sbjct: 149 DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208

Query: 265 IHSSLEGLA-----NLTNLQVLDLSDNQ 287
              S   LA        ++  L+L  N 
Sbjct: 209 GLKSYAELAYIFSSIPNHVVSLNLCLNC 236

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 32/173 (18%)

Query: 154 KQLKMLNLGDNFFND-------SILPYLNTLTSLTTLILSDNSIEGSRTKQGLA-----N 201
             +  LNL  N             L  +    S+T+L LS N + G ++   LA      
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPA--SVTSLDLSANLL-GLKSYAELAYIFSSI 223

Query: 202 LRYLQVLDLSGNFNITSGSLTRLG--LANLTNLKKLDLGSCGITTI---------QGLAK 250
             ++  L+L  N  +   SL  L     +L +L+ + L    +  +              
Sbjct: 224 PNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282

Query: 251 LKNLEALDLSYNYYIHSSLEGLANL-----TNLQVLDLSDNQNLTTLGKPLNL 298
           ++ +  +D +      S    ++NL         V  L +   +       N+
Sbjct: 283 IQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNI 335

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 22/134 (16%)

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLA-----NLRYLQVLDLSGNFNITSGSLTRLGLA- 227
            +    +T+L LS N++  S +   L          +  L+LSGN ++   +   L    
Sbjct: 18  TSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQIL 75

Query: 228 --NLTNLKKLDLGSCGITT--IQGLAKL-----KNLEALDLSYNYYIHSSLEGLANL--- 275
                N+  L+L    ++      L K        +  LDL +N +   S          
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 276 --TNLQVLDLSDNQ 287
              ++  L+L  N 
Sbjct: 136 LPASITSLNLRGND 149

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLA---NLTNLKKLDLGSCGITT--IQGLAKL 251
           +  +    +  LDLS N N+ S S   L  A      ++  L+L    +       L ++
Sbjct: 16  EFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74

Query: 252 -----KNLEALDLSYNYYIHSSLEGLANL-----TNLQVLDLSDNQ 287
                 N+ +L+LS N+  + S + L          + VLDL  N 
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 19/126 (15%)

Query: 156 LKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGSRTKQ------GLANLRYL 205
           +  LNL  N  +      +    ++L  L T+ L  + ++    +Q         N++ +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 206 QVLDLSGNFNITSG--SLTRLGLANLTNLKKLDLGSCGITTIQG-------LAKLKNLEA 256
            ++D +G     S    ++ L            L +  +   Q        L     L  
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRE 346

Query: 257 LDLSYN 262
              +  
Sbjct: 347 SIQTCK 352

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
                L L++N             L  L+ ++ S N  IT   +        + + ++ L
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KIT--DIEEGAFEGASGVNEILL 88

Query: 238 GSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTTL 292
            S  +  +Q      L++L+ L L  N  I          L+++++L L DNQ +TT+
Sbjct: 89  TSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ-ITTV 144

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-- 173
           L    +F    +L++++   N  T I E     +F     +  + L  N   +  + +  
Sbjct: 47  LEATGIFKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEILLTSNRLEN--VQHKM 100

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
              L SL TL+L  N I           L  +++L L  N  IT  ++       L +L 
Sbjct: 101 FKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN-QIT--TVAPGAFDTLHSLS 156

Query: 234 KLDLGS 239
            L+L +
Sbjct: 157 TLNLLA 162

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC------GITTIQGLAKL-KN 253
           +   +Q +D + +  I S     +    L  ++K+ L  C       +  +  L  L K+
Sbjct: 59  DKYKIQAIDAT-DSCIMSIGFDHM--EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKS 115

Query: 254 LEALDLSYNYYI-HSSLEGLANLTNLQVLDLSDNQNLTTLG 293
           +  +++     +    +  L +  NL+ L LSD   +    
Sbjct: 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKE 156

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL-------RYLQVL 208
           ++ ++  D+        ++  L  +  + L             L  L       + +  +
Sbjct: 63  IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH---YIEDGCLERLSQLENLQKSMLEM 119

Query: 209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEAL 257
           ++    N+T   +    L +  NLK L L        +         +L
Sbjct: 120 EIISCGNVTDKGII--ALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSL 166

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 14/136 (10%)

Query: 157 KMLNLGDNFFNDSILP--YLNTLTSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSG 212
             + L  N     ++P    +    L  + LS+N I        QGL +L  L    L G
Sbjct: 35  TEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL---VLYG 89

Query: 213 NFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA--KLKNLEALDLSYNYYIHSSLE 270
           N  IT   L +     L +L+ L L +  I  ++  A   L NL  L L  N     +  
Sbjct: 90  N-KITE--LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 271 GLANLTNLQVLDLSDN 286
             + L  +Q + L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 15/121 (12%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLG---LANLTNLKK 234
            ++T + L  N+I+        +  + L+ +DLS N       ++ L       L +L  
Sbjct: 32  ETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNN------QISELAPDAFQGLRSLNS 84

Query: 235 LDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTT 291
           L L    IT +       L +L+ L L+ N  I+        +L NL +L L DN+ L T
Sbjct: 85  LVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQT 142

Query: 292 L 292
           +
Sbjct: 143 I 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 18/129 (13%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTS 179
           F P+++L+R+DL  N  + +    A D+F  L+ L  L L  N    + LP      L S
Sbjct: 52  FSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGN--KITELPKSLFEGLFS 105

Query: 180 LTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLG- 238
           L  L+L+ N I          +L  L +L L  N  +   ++ +   + L  ++ + L  
Sbjct: 106 LQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDN-KLQ--TIAKGTFSPLRAIQTMHLAQ 161

Query: 239 -----SCGI 242
                 C +
Sbjct: 162 NPFICDCHL 170

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 30/190 (15%), Positives = 52/190 (27%), Gaps = 27/190 (14%)

Query: 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-----N 175
           L      L  ++L                     + + L L  N         L     +
Sbjct: 96  LGSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152

Query: 176 TLTSLTTLILSDNSIEGSRTK---QGLANLRYLQVLDLSGNFNITSGSLTRL--GLANLT 230
               +TTL LS+N +  +      +GLA    +  L L     +    L  L   L    
Sbjct: 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNR 211

Query: 231 NLKKLDLGSCGITTI------QGLAKLKNLEALDLSYN-------YYIHSSLEGLANLTN 277
            L++L++   G          +   +  +LE L L +N         +            
Sbjct: 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271

Query: 278 LQVLDLSDNQ 287
           + V       
Sbjct: 272 VVVSLTEGTA 281

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 12/177 (6%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFF--NDSILPYLNTLTSLTTLIL 185
           L+ L+     F  I          + + L  + +GD               L       L
Sbjct: 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSL 253

Query: 186 SDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT- 244
           +++     +      NL + + L   G   +    +  L       ++KLDL    + T 
Sbjct: 254 NEDIGMPEK----YMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALLETE 308

Query: 245 --IQGLAKLKNLEALDLSYNYYIHSSLEGLA-NLTNLQVLDLSDNQNLTTLGKPLNL 298
                + K  NLE L+   N      LE LA     L+ L +    +   +     L
Sbjct: 309 DHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKL----KNLE 255
            NLR L+ +       ++   L RL  A   +L+ L L  C   T  GL  +    + ++
Sbjct: 109 NNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIK 167

Query: 256 ALDLSYNYYIHSSLEGLA----NLTNLQVLDLS 284
            L +  + +     + L     + T+L+VL+  
Sbjct: 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY 200

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 15/154 (9%)

Query: 152 SLKQLKMLNLGDNFFND----SILPYLNTLTSLTTLILSD-NSIEGSRTKQGLA----NL 202
             ++L+ + +  +   +    SI  YL  L     ++L     I       G+       
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435

Query: 203 RYLQVLDLSGN-FNITSGSLTRLGLANLTNLKKLDLGSCGIT--TIQGLAK-LKNLEALD 258
           + L+          +T   L+ +G     N++ + LG  G +   +   ++   NL+ L+
Sbjct: 436 KKLRRFAFYLRQGGLTDLGLSYIG-QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494

Query: 259 LSYNYYIHSSLEGLA-NLTNLQVLDLSDNQNLTT 291
           +    +   ++      L +L+ L +   +   T
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 6e-07
 Identities = 25/189 (13%), Positives = 59/189 (31%), Gaps = 20/189 (10%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLG------DNFFNDSILPYLNTLTSL 180
           EL+ + +  +  T            +L   +++ L       D   ++ +   L     L
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438

Query: 181 TTLILSDNSIEGSRTKQGLANL----RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
                      G  T  GL+ +      ++ + L      +   L         NL+KL+
Sbjct: 439 RRFAFYLRQ--GGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEF-SRGCPNLQKLE 494

Query: 237 LGSCGITT---IQGLAKLKNLEALDLSYNYYIHSSLEGLA---NLTNLQVLDLSDNQNLT 290
           +  C  +       + KL +L  L +       +  + +       N++++       + 
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVN 554

Query: 291 TLGKPLNLR 299
             G+   + 
Sbjct: 555 QQGEIREME 563

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 24/158 (15%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLT------------SLTTLILSDNSI--EGSRT-K 196
             KQLK L +        +      ++             L  + +  + I  E   +  
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 197 QGLANLRYLQVLDLSGNFNITSGSLT---RLGLANLTNLKKLDLGS-CGITTIQGLAKL- 251
             L NL   +++ L     IT   L    R  L     L++       G  T  GL+ + 
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459

Query: 252 ---KNLEALDLSYNYYIHSSLEGLA-NLTNLQVLDLSD 285
               N+  + L Y       L   +    NLQ L++  
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 8/122 (6%)

Query: 152 SLKQLKMLNLGDNFFND-SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDL 210
               ++ + LG    +D  ++ +     +L  L +             +  L  L+ L +
Sbjct: 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520

Query: 211 SGNFNITSGSLTRLGLA-NLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSL 269
            G    +      + +A    N++ +          QG  +   +E       YY   SL
Sbjct: 521 QGY-RASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIRE--MEHPAHILAYY---SL 574

Query: 270 EG 271
            G
Sbjct: 575 AG 576

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.4 bits (128), Expect = 4e-08
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 11/150 (7%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY---LQVL 208
               LK L L      + +   L     L  L     + E         ++      ++ 
Sbjct: 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT---IQGLAKLKNLEALDLSYNYYI 265
            LSG ++     L  +  +  + L  L+L    + +   ++ L +   L+ L +     I
Sbjct: 269 CLSGFWDAVPAYLPAV-YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--I 325

Query: 266 H-SSLEGLA-NLTNLQVLDLSDNQNLTTLG 293
             + LE LA    +L+ L +  ++      
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEP 355

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 27/213 (12%)

Query: 109 SGSGSALLLNMSLFHPFEELQRLDLPGNW-----------FTGIYENRAYDSFGSLKQLK 157
                  +   ++   F +++ ++L G             + G           S   L+
Sbjct: 49  FIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108

Query: 158 MLNLGDNFFNDSILPYL-NTLTSLTTLILSDNSIEGSRTKQGLA----NLRYLQVLDLSG 212
            + L      D  L  +  +  +   L+LS        +  GLA      R L+ LDL  
Sbjct: 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRE 165

Query: 213 NF--NITSGSLTRLGLANLTNLKKLDLGSC-GITTIQGLAKL----KNLEALDLSYNYYI 265
           +   +++   L+       T+L  L++       +   L +L     NL++L L+    +
Sbjct: 166 SDVDDVSGHWLSHFP-DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224

Query: 266 HSSLEGLANLTNLQVLDLSDNQNLTTLGKPLNL 298
                 L     L+ L                L
Sbjct: 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 18/180 (10%)

Query: 120 SLFHPFEELQRLDLPG--NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL 177
           +L     +L+ L   G          +    +    K+L+ L+   +     +    +  
Sbjct: 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237
           + LTTL LS  +++     + L     LQ L +     I    L  L  +   +L++L +
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD--YIEDAGLEVLA-STCKDLRELRV 345

Query: 238 GSCGIT--------TIQGLAKL----KNLEALDLSYNYYIHSSLEGLA-NLTNLQVLDLS 284
                         T QGL  +      LE++        +++L  +A N  N+    L 
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 20/144 (13%), Positives = 51/144 (35%), Gaps = 15/144 (10%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL----RYLQV 207
            ++      L     +      +     L  L LS     G  T +    +    + +++
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-----GLLTDKVFEYIGTYAKKMEM 460

Query: 208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT---IQGLAKLKNLEALDLSYNYY 264
           L ++     +   +  + L+   +L+KL++  C       +   +KL+ + +L +S    
Sbjct: 461 LSVAFA-GDSDLGMHHV-LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

Query: 265 IHSSLEGLA-NLTNLQVLDLSDNQ 287
              + + L   +  L V  + +  
Sbjct: 519 SFGACKLLGQKMPKLNVEVIDERG 542

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 17/165 (10%), Positives = 45/165 (27%), Gaps = 31/165 (18%)

Query: 152 SLKQLKMLNLGD----------NFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA- 200
           + K L+ L +                  ++        L +++     +    T   L  
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM----TNAALIT 391

Query: 201 ---NLRYLQVLDLSG---------NFNITSGSLTRLGLANLTNLKKLDLGSC-GITTIQG 247
              N   +    L                      + + +  +L++L L         + 
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI-VEHCKDLRRLSLSGLLTDKVFEY 450

Query: 248 LAK-LKNLEALDLSYNYYIHSSLEGLA-NLTNLQVLDLSDNQNLT 290
           +    K +E L +++       +  +     +L+ L++ D     
Sbjct: 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 34/184 (18%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           + +    +    + ++    +    +           L  ++ L LG N      +  L 
Sbjct: 31  VTDAVTQNELNSIDQIIANNSDIKSV------QGIQYLPNVRYLALGGNKL--HDISALK 82

Query: 176 TLTSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITSGSLTRL--GLAN-LT 230
            LT+LT LIL+ N ++   +     L NL   + L L  N       L  L  G+ + LT
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGVFDKLTNL---KELVLVEN------QLQSLPDGVFDKLT 133

Query: 231 NLKKLDLGSCGITTI-QGL-AKLKNLEALDLSYNYYIHSSLEGLAN-----LTNLQVLDL 283
           NL  L+L    + ++ +G+  KL NL  LDLSYN      L+ L       LT L+ L L
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-----QLQSLPEGVFDKLTQLKDLRL 188

Query: 284 SDNQ 287
             NQ
Sbjct: 189 YQNQ 192

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 25/170 (14%)

Query: 129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN 188
            + +L     T         +   L  +  +   ++  +   +  +  L ++  L L  N
Sbjct: 22  IKANLKKKSVTDA------VTQNELNSIDQIIANNS--DIKSVQGIQYLPNVRYLALGGN 73

Query: 189 SIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL---GLANLTNLKKLDLGSCGITTI 245
            +      + L NL YL    L+GN       L  L       LTNLK+L L    + ++
Sbjct: 74  KLHDISALKELTNLTYL---ILTGN------QLQSLPNGVFDKLTNLKELVLVENQLQSL 124

Query: 246 QG--LAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTTL 292
                 KL NL  L+L++N  + S  +G+   LTNL  LDLS NQ L +L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-LQSL 172

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLKKLD 236
                  L   S+  + T+  L ++     +  + +       +  + G+  L N++ L 
Sbjct: 19  AETIKANLKKKSVTDAVTQNELNSI---DQIIANNS------DIKSVQGIQYLPNVRYLA 69

Query: 237 LGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
           LG   +  I  L +L NL  L L+ N            LTNL+ L L +NQ L +L
Sbjct: 70  LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSL 124

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNT--LTSLTTLILS--------DNSIEGSRTKQGLAN 201
               LK L +      DS++  +    L +L  L+L         D  +   R       
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT------IQGLAKLKNLE 255
              L+ L +             L    L  L+ +D+ +  +T       +  + K+K+L+
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 256 ALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN 288
            +++ YNY      + L     +++ D+SD+Q 
Sbjct: 311 FINMKYNYLSDEMKKELQKSLPMKI-DVSDSQE 342

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 32/149 (21%), Positives = 47/149 (31%), Gaps = 25/149 (16%)

Query: 155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF 214
             + L+L     +D  L   N    L        ++          N+  L  L+LS N 
Sbjct: 128 SQQALDL-KGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEE-----NIPELLSLNLSNN- 180

Query: 215 NITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLK--NLEALDLSYN---------- 262
            +         +    NLK L+L    + + + L K+K   LE L L  N          
Sbjct: 181 RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQS 240

Query: 263 YYIHSSLEGLANLTNLQVLDLSDNQNLTT 291
            YI +  E    L  L      D   L  
Sbjct: 241 TYISAIRERFPKLLRL------DGHELPP 263

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 19/153 (12%)

Query: 153 LKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD-NSIEGSRTK---QGLANLRYLQVL 208
            K +           +++    N    L  + L++  +I     K   + L    Y++  
Sbjct: 11  YKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKF 70

Query: 209 DLSGNFNITSGSLTRLG--LANLTNLKKLDLGSCGITT------IQGLAKLKNLEALDLS 260
            + G           L   L     LK L++ S  I+       ++ L    +L  L + 
Sbjct: 71  SIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID 129

Query: 261 YNYYI------HSSLEGLANLTNLQVLDLSDNQ 287
                            L   T L        Q
Sbjct: 130 NQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 15/129 (11%)

Query: 174 LNTLTSLTTLILSDNSIEGSRT-KQGLANLRYLQVLDLSGNFNITSGSLTRL--GLANLT 230
           +             NS +   T K+   N   L+ ++L+   NI   +L      L   T
Sbjct: 6   IKPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT 65

Query: 231 NLKKLDLGSCGITTI------QGLAKLKNLEALDLSYNYYIHSS-----LEGLANLTNLQ 279
            +KK  +              + L     L++L++  N+ I  S     +E L + T+L 
Sbjct: 66  YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLI 124

Query: 280 VLDLSDNQN 288
            L + +   
Sbjct: 125 ELRIDNQSQ 133

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 39/162 (24%), Positives = 58/162 (35%), Gaps = 38/162 (23%)

Query: 129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLILS 186
           ++LDL       + +     +F  L +L  LNL  N      L     + LT L TL L+
Sbjct: 38  EKLDLQSTGLATLSDA----TFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLA 91

Query: 187 DNSIEG--SRTKQGLANLRYLQVLDLSGNFNITS---------GSLTRLGLAN------- 228
           +N +          L  L     L L GN  + S           L  L L         
Sbjct: 92  NNQLASLPLGVFDHLTQL---DKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147

Query: 229 ------LTNLKKLDLGSCGITTIQGLA--KLKNLEALDLSYN 262
                 LTNL+ L L +  + ++   A  +L  L+ + L  N
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA--KLKNLEALDLSYNY 263
           + LDL     + +  L+      LT L  L+L    + T+       L  L  L L+ N 
Sbjct: 38  EKLDLQST-GLAT--LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 264 YIHSSLEGLA--NLTNLQVLDLSDNQNLTTL 292
              +SL      +LT L  L L  NQ L +L
Sbjct: 95  --LASLPLGVFDHLTQLDKLYLGGNQ-LKSL 122

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 15/121 (12%)

Query: 178 TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL---GLANLTNLKK 234
                L L    +  + +      L  L  L+L  N       L  L      +LT L  
Sbjct: 35  ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYN------QLQTLSAGVFDDLTELGT 87

Query: 235 LDLGSCGITTIQGLA--KLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLTT 291
           L L +  + ++       L  L+ L L  N  + S   G+   LT L+ L L+ NQ L +
Sbjct: 88  LGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQS 145

Query: 292 L 292
           +
Sbjct: 146 I 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 46/372 (12%), Positives = 99/372 (26%), Gaps = 140/372 (37%)

Query: 13  IKFSLMSL---IWIIVLMNEIHGY----KACL--ETERTALLEIKSFF----ISVSDIGY 59
           ++ +L+ L     +++      G     K  +  +   +  ++ K  F    +++ +   
Sbjct: 140 LRQALLELRPAKNVLI-----DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 60  DDKIL-----------PSWVGEDDGMSS-----------------------------DCC 79
            + +L           P+W    D  S+                             +  
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 80  DDWE----GVKCN--ATTR-----------RVMQLSLNETIKFNYSSGSGSALL---LNM 119
           +        + C    TTR               +SL+       +     +LL   L+ 
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDC 313

Query: 120 SLF---------HPF------EELQRLDLPGNWFTGIYENRAYDSFG-----SLKQLKML 159
                       +P       E ++  D    W    +++   D        SL  L+  
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIR--DGLATWDN--WKHVNCDKLTTIIESSLNVLEPA 369

Query: 160 NLGDNFFNDSILPYLNTLTSLTTL-ILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218
                F   S+ P  +       L ++  + I+       + N                 
Sbjct: 370 EYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIK--SDVMVVVN----------------- 409

Query: 219 GSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNL 278
             L +  L      K+    +  I +I    K+K      L      H S+     + + 
Sbjct: 410 -KLHKYSLVE----KQPKESTISIPSIYLELKVKLENEYAL------HRSI-----VDHY 453

Query: 279 QVLDLSDNQNLT 290
            +    D+ +L 
Sbjct: 454 NIPKTFDSDDLI 465

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNY 263
             L L GN      +L    L+N  +L  +DL +  I+T+     + +  L  L LSYN 
Sbjct: 34  TELYLDGN----QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 264 YIHSSLEGLA--NLTNLQVLDLSDNQ 287
                +       L +L++L L  N 
Sbjct: 90  L--RCIPPRTFDGLKSLRLLSLHGND 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 230 TNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEG--LANLTNLQVLDLSDN 286
            ++ +L L     T +   L+  K+L  +DLS N    S+L     +N+T L  L LS N
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYN 88

Query: 287 QNLTTL 292
           + L  +
Sbjct: 89  R-LRCI 93

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA--KLKNLEALDLSYNY 263
             L L+ N  +   S   L    L +L KL+L    +T I+  A     +++ L L  N 
Sbjct: 32  TELLLNDN-ELGRISSDGL-FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN- 88

Query: 264 YIHSSLEGLAN-----LTNLQVLDLSDNQ 287
                ++ ++N     L  L+ L+L DNQ
Sbjct: 89  ----KIKEISNKMFLGLHQLKTLNLYDNQ 113

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 17/117 (14%)

Query: 178 TSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITSGSLTRL--GL-ANLTNL 232
           T+   L L DN I          L NL+ L    L  N       L  L  G+  +LT L
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKEL---YLGSN------QLGALPVGVFDSLTQL 90

Query: 233 KKLDLGSCGITTI-QGL-AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
             LDLG+  +T +   +  +L +L+ L +  N  +     G+  LT+L  L L  NQ
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.98
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.81
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.79
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.77
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.67
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.53
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.3
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.16
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.97
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.76
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.64
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.08
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.9
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.88
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.75
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.72
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.62
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.55

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-34  Score=254.72  Aligned_cols=239  Identities=24%  Similarity=0.353  Sum_probs=148.5

Q ss_pred             cchHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCCC--CCceEecCCC--CcEEEeeeCc-cccc--cc
Q 022302           35 ACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDD--WEGVKCNATT--RRVMQLSLNE-TIKF--NY  107 (299)
Q Consensus        35 ~~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~--w~gv~C~~~~--~~v~~l~l~~-~l~~--~~  107 (299)
                      .|.++|++||++||+++.++       ..+.+|..     +.+|| .  |.||.|+...  ++|+.+++++ .+.+  .+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~-------~~l~~W~~-----~~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~   68 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNP-------TTLSSWLP-----TTDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI   68 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC-------GGGTTCCT-----TSCTT-TTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCc-------ccccCCCC-----CCCCC-cCCCcceEeCCCCCCceEEEEECCCCCccCCccc
Confidence            58999999999999999766       36789976     56888 7  9999998644  7999999998 6665  33


Q ss_pred             cCCCC--------------ccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHh
Q 022302          108 SSGSG--------------SALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY  173 (299)
Q Consensus       108 ~~~~~--------------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  173 (299)
                      +....              ......+..++++++|++|++++|.+++..|.    .+..+++|++|++++|.+++.+|..
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~  144 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCCcCChH
Confidence            22110              01111223344455555555555555544444    4455555555555555555555555


Q ss_pred             hccCCCCcEEeCCCCcCCCcchhhhhcCCC-CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccC
Q 022302          174 LNTLTSLTTLILSDNSIEGSRTKQGLANLR-YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAK  250 (299)
Q Consensus       174 l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~  250 (299)
                      +..+++|++|++++|++++.+|. .+..++ +|++|++++|  .+.+.+| ..+..++ |++|++++|.+++..  .+..
T Consensus       145 ~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N--~l~~~~~-~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~  219 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRN--RLTGKIP-PTFANLN-LAFVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSS--EEEEECC-GGGGGCC-CSEEECCSSEEEECCGGGCCT
T ss_pred             HhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCC--eeeccCC-hHHhCCc-ccEEECcCCcccCcCCHHHhc
Confidence            55555555555555555544443 444444 5555555555  4444444 4444444 566666666555432  2667


Q ss_pred             CCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      +++|+.|++++|.+++.+|. +..+++|++|++++|+++|.+|..+
T Consensus       220 l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l  264 (313)
T 1ogq_A          220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence            77777777777777765555 6777888888888888887777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.98  E-value=3.9e-32  Score=266.00  Aligned_cols=242  Identities=28%  Similarity=0.330  Sum_probs=194.9

Q ss_pred             cccccchHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCcEEEeeeCc-ccccc---
Q 022302           31 HGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFN---  106 (299)
Q Consensus        31 ~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~-~l~~~---  106 (299)
                      +++++..++|++||++||+++.++       ..+++|..     +.+|| .|.||+|+  .++|+.+++++ .+.|.   
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~-------~~l~~W~~-----~~~~C-~w~gv~C~--~~~v~~L~L~~~~l~g~~~~   68 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDK-------NLLPDWSS-----NKNPC-TFDGVTCR--DDKVTSIDLSSKPLNVGFSA   68 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCT-------TSSTTCCT-----TSCGG-GSTTEEEE--TTEEEEEECTTSCCCEEHHH
T ss_pred             CccccCCHHHHHHHHHHHhhCCCc-------ccccCCCC-----CCCCc-CCcceEEC--CCcEEEEECCCCCcCCccCc
Confidence            345566789999999999999866       36789986     56899 99999998  58999999998 77664   


Q ss_pred             ccCCCCccc------------cccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhh
Q 022302          107 YSSGSGSAL------------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL  174 (299)
Q Consensus       107 ~~~~~~~~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l  174 (299)
                      +++......            ...+..++++++|++|++++|.+.+.+|..  ..++.+++|++|++++|.+.+.+|..+
T Consensus        69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  146 (768)
T 3rgz_A           69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSG  146 (768)
T ss_dssp             HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCS
T ss_pred             cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHH
Confidence            322111110            011256888999999999999998876631  157889999999999999888777765


Q ss_pred             -ccCCCCcEEeCCCCcCCCcchhhh---hcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-ccc
Q 022302          175 -NTLTSLTTLILSDNSIEGSRTKQG---LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLA  249 (299)
Q Consensus       175 -~~l~~L~~L~L~~n~l~~~~p~~~---~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~  249 (299)
                       .++++|++|++++|++++..+. .   +.++++|++|++++|  .+.+..+   +..+++|++|++++|++++.. .+.
T Consensus       147 ~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n--~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~l~  220 (768)
T 3rgz_A          147 GLKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGN--KISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLG  220 (768)
T ss_dssp             CCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSS--EEESCCB---CTTCTTCCEEECCSSCCCSCCCBCT
T ss_pred             hccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCC--cccccCC---cccCCcCCEEECcCCcCCCCCcccc
Confidence             7889999999999999876554 4   788999999999999  7766655   378899999999999988743 488


Q ss_pred             CCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302          250 KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       250 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~  295 (299)
                      .+++|++|++++|.+++.+|..+..+++|++|++++|++.|.+|..
T Consensus       221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  266 (768)
T 3rgz_A          221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL  266 (768)
T ss_dssp             TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC
T ss_pred             cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc
Confidence            9999999999999999999999999999999999999999888764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=3.3e-31  Score=254.35  Aligned_cols=85  Identities=22%  Similarity=0.169  Sum_probs=57.2

Q ss_pred             ccchHHHHHHHHHhhhhccCccCCCCC--CCCCCCCCCCCCCCCCCCCCCC---CceEecCCCCcEEEeeeCc-cccccc
Q 022302           34 KACLETERTALLEIKSFFISVSDIGYD--DKILPSWVGEDDGMSSDCCDDW---EGVKCNATTRRVMQLSLNE-TIKFNY  107 (299)
Q Consensus        34 ~~~~~~~~~aL~~~~~~~~~~~~~~~~--~~~~~~W~~~~~~~~~~~c~~w---~gv~C~~~~~~v~~l~l~~-~l~~~~  107 (299)
                      .+....|+.||.++++++.+++-...+  .....+|+.     +.+|| .|   .||+|+. .+||++|+|++ ++.|.+
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-----~~~~c-~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~l   97 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-----NKELD-MWGAQPGVSLNS-NGRVTGLSLEGFGASGRV   97 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-----SSCGG-GTTCCTTEEECT-TCCEEEEECTTSCCEEEE
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-----CCCcc-cccCCCCeEEcC-CCCEEEEEecCcccCCcC
Confidence            345567999999999999765300000  012357987     57889 99   9999986 48999999999 877743


Q ss_pred             cCCCCccccccccccCCCCCccEEeCCCC
Q 022302          108 SSGSGSALLLNMSLFHPFEELQRLDLPGN  136 (299)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  136 (299)
                      +           ..++++++|++|+|++|
T Consensus        98 p-----------~~l~~L~~L~~L~Ls~N  115 (636)
T 4eco_A           98 P-----------DAIGQLTELEVLALGSH  115 (636)
T ss_dssp             C-----------GGGGGCTTCCEEESCCG
T ss_pred             C-----------hHHhcCccceEEECcCC
Confidence            2           34455555555555555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=5.1e-30  Score=251.98  Aligned_cols=240  Identities=19%  Similarity=0.200  Sum_probs=164.4

Q ss_pred             cccchHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCC--CCCC------------CceEecCCCCcEEEee
Q 022302           33 YKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDC--CDDW------------EGVKCNATTRRVMQLS   98 (299)
Q Consensus        33 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--c~~w------------~gv~C~~~~~~v~~l~   98 (299)
                      .+.+..+|++||++||+++.++           +|+..+++...+|  | .|            .||.|+. .+||+.|+
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~  329 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLS  329 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEE
Confidence            3456778999999999999655           3654210001234  7 99            9999986 68999999


Q ss_pred             eCc-cccccccCCCCcccc-----c-------------------------------------------------------
Q 022302           99 LNE-TIKFNYSSGSGSALL-----L-------------------------------------------------------  117 (299)
Q Consensus        99 l~~-~l~~~~~~~~~~~~~-----~-------------------------------------------------------  117 (299)
                      |++ ++.|.+++..+....     +                                                       
T Consensus       330 Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~  409 (876)
T 4ecn_A          330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN  409 (876)
T ss_dssp             CTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred             CccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence            999 887754432110000     0                                                       


Q ss_pred             ------------------------------cccccCCCCCccEEeCCCCCCCC-----------------cchhhhHHhh
Q 022302          118 ------------------------------NMSLFHPFEELQRLDLPGNWFTG-----------------IYENRAYDSF  150 (299)
Q Consensus       118 ------------------------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~~l  150 (299)
                                                    .|..++++++|++|+|++|.+++                 .+|.    .+
T Consensus       410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l  485 (876)
T 4ecn_A          410 RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----EL  485 (876)
T ss_dssp             TCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CC
T ss_pred             hCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hh
Confidence                                          23346667777777777777776                 2444    55


Q ss_pred             c--CCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCc-CCC-cchhhhhcCC-------CCCCEEECCCCcCCCCC
Q 022302          151 G--SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEG-SRTKQGLANL-------RYLQVLDLSGNFNITSG  219 (299)
Q Consensus       151 ~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~~l-------~~L~~L~Ls~n~~~~~~  219 (299)
                      +  ++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|. .+..+       ++|++|++++|  .+. 
T Consensus       486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N--~L~-  561 (876)
T 4ecn_A          486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYN--NLE-  561 (876)
T ss_dssp             CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSS--CCC-
T ss_pred             hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCC--cCC-
Confidence            5  67777777777777777777777777777777777776 665 5554 34433       37777777777  555 


Q ss_pred             ccchh--hhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCC-CCEEecCCCCCCCccCCCc
Q 022302          220 SLTRL--GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTN-LQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       220 ~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~g~ip~~~  296 (299)
                      .+| .  .+..+++|+.|++++|+++..+.+..+++|+.|++++|.++ .+|+.+..+++ |++|++++|++. .+|+.+
T Consensus       562 ~ip-~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~  638 (876)
T 4ecn_A          562 EFP-ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF  638 (876)
T ss_dssp             BCC-CHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred             ccC-ChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence            566 4  67777778888888877776566777777888888888877 77777777777 888888888877 677654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.9e-30  Score=229.78  Aligned_cols=243  Identities=21%  Similarity=0.220  Sum_probs=162.5

Q ss_pred             ccchHHHHHHHHHhhhhcc-CccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecC--------CCCcEEEeeeCc-cc
Q 022302           34 KACLETERTALLEIKSFFI-SVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNA--------TTRRVMQLSLNE-TI  103 (299)
Q Consensus        34 ~~~~~~~~~aL~~~~~~~~-~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~--------~~~~v~~l~l~~-~l  103 (299)
                      .....+|++||++||+++. ++.      .....|...... ..++| .|.|+.|..        ...+|+.+++++ .+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~------~~~~~w~~~~~~-~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l   93 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRN------RWHSAWRQANSN-NPQIE-TRTGRALKATADLLEDATQPGRVALELRSVPL   93 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCT------THHHHHHHHTTT-CTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             cccCchHHHHHHHHHHhccCCch------hhhhhhcccccc-ccccc-ccCCcchhhhHHHHhcccccceeEEEccCCCc
Confidence            3456789999999999884 432      356778411111 46778 999999952        346899999988 55


Q ss_pred             cccccCCCCccc------------cccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch
Q 022302          104 KFNYSSGSGSAL------------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (299)
Q Consensus       104 ~~~~~~~~~~~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  171 (299)
                      . .++.......            ...+..++++++|++|++++|.+. .+|.    .+..+++|++|++++|++.+.+|
T Consensus        94 ~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~----~l~~l~~L~~L~L~~n~~~~~~p  167 (328)
T 4fcg_A           94 P-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPA----SIASLNRLRELSIRACPELTELP  167 (328)
T ss_dssp             S-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCG----GGGGCTTCCEEEEEEETTCCCCC
T ss_pred             h-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcH----HHhcCcCCCEEECCCCCCccccC
Confidence            4 2322211100            011234556666666666666666 3343    56666666666666666666666


Q ss_pred             Hhhcc---------CCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCC
Q 022302          172 PYLNT---------LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGI  242 (299)
Q Consensus       172 ~~l~~---------l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  242 (299)
                      ..+..         +++|++|++++|+++ .+|. .+..+++|++|++++|  .+.+ +| ..+..+++|++|++++|++
T Consensus       168 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~N--~l~~-l~-~~l~~l~~L~~L~Ls~n~~  241 (328)
T 4fcg_A          168 EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNS--PLSA-LG-PAIHHLPKLEELDLRGCTA  241 (328)
T ss_dssp             SCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG-GGGGCTTCCEEEEESS--CCCC-CC-GGGGGCTTCCEEECTTCTT
T ss_pred             hhHhhccchhhhccCCCCCEEECcCCCcC-cchH-hhcCCCCCCEEEccCC--CCCc-Cc-hhhccCCCCCEEECcCCcc
Confidence            55543         666777777777666 4564 5777777788888777  5554 44 3577778888888888776


Q ss_pred             CCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          243 TTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       243 ~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      .+..  .+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.|.+|+.+
T Consensus       242 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            6553  36778888888888888888888888888888888888888888888765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=9.4e-25  Score=201.28  Aligned_cols=196  Identities=26%  Similarity=0.317  Sum_probs=140.0

Q ss_pred             CCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhh
Q 022302           81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF  150 (299)
Q Consensus        81 ~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  150 (299)
                      .|..|.|...         ..+++.|++++ ++.+           +.+..|.++++|++|++++|.+.+..+.    .|
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~  119 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-----------IQADTFRHLHHLEVLQLGRNSIRQIEVG----AF  119 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECTT----TT
T ss_pred             CCcEEEECCCCcCccCCCCCCCccEEECcCCcCce-----------ECHHHcCCCCCCCEEECCCCccCCcChh----hc
Confidence            3567888642         13567777777 5444           4456788888999999999988888776    78


Q ss_pred             cCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCC
Q 022302          151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT  230 (299)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~  230 (299)
                      .++++|++|+|++|.+++..+..+..+++|++|++++|+++ .++...+..+++|++|++++|  ...+.++...+..++
T Consensus       120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~  196 (452)
T 3zyi_A          120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL--KKLEYISEGAFEGLF  196 (452)
T ss_dssp             TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCT
T ss_pred             cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCC--CCccccChhhccCCC
Confidence            88889999999998888776677888888999999888887 455556778888888888876  455555545677777


Q ss_pred             CCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302          231 NLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       231 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      +|++|++++|++++.+.+..+++|+.|+|++|.+++..|..+..+++|++|++++|++.+..|.
T Consensus       197 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  260 (452)
T 3zyi_A          197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN  260 (452)
T ss_dssp             TCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred             CCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence            7777777777777766666666666666666666665565565555555555555555544443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.6e-24  Score=186.42  Aligned_cols=205  Identities=22%  Similarity=0.257  Sum_probs=151.4

Q ss_pred             CCCCCCCceEecCCCCcEEEeeeCc-cccccccCCC-----------CccccccccccCCCCCccEEeCCCCCCCCcchh
Q 022302           77 DCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGS-----------GSALLLNMSLFHPFEELQRLDLPGNWFTGIYEN  144 (299)
Q Consensus        77 ~~c~~w~gv~C~~~~~~v~~l~l~~-~l~~~~~~~~-----------~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  144 (299)
                      ++| .|.|+.|.. ...++.+++++ +++. ++...           .....+.+..|.++++|++|++++|.++...+.
T Consensus         3 ~~C-~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~   79 (270)
T 2o6q_A            3 ALC-KKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG   79 (270)
T ss_dssp             CCB-GGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred             ccC-CCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence            567 787777754 22344555555 3332 11111           111223445678888999999999988877665


Q ss_pred             hhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchh
Q 022302          145 RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL  224 (299)
Q Consensus       145 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~  224 (299)
                          .+..+++|++|++++|.+++..+..+..+++|++|++++|++++ +++..+..+++|++|++++|  .+.+..+ .
T Consensus        80 ----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n--~l~~~~~-~  151 (270)
T 2o6q_A           80 ----IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYN--ELQSLPK-G  151 (270)
T ss_dssp             ----TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS--CCCCCCT-T
T ss_pred             ----hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCC--cCCccCH-h
Confidence                67888899999999998887766777888899999999998886 44446788899999999988  6554433 5


Q ss_pred             hhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCcc
Q 022302          225 GLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL  292 (299)
Q Consensus       225 ~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~i  292 (299)
                      .+..+++|++|++++|++++.+.  +..+++|++|++++|.+++..+..+..+++|+.|++++|++...-
T Consensus       152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            67888899999999998887764  778888999999999888666667888889999999999886543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=5.5e-25  Score=215.39  Aligned_cols=171  Identities=27%  Similarity=0.300  Sum_probs=146.6

Q ss_pred             ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (299)
Q Consensus       119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  198 (299)
                      +..+.++++|++|++++|.+++.+|.    .++.+++|++|++++|++++.+|..+..+++|++|++++|.++|.+|...
T Consensus       483 p~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          483 PSGLSNCTNLNWISLSNNRLTGEIPK----WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred             CHHHhcCCCCCEEEccCCccCCcCCh----HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence            45677888888888988888888887    78888899999999999888888888889999999999998887776521


Q ss_pred             ---------------------------------------------------------------------hcCCCCCCEEE
Q 022302          199 ---------------------------------------------------------------------LANLRYLQVLD  209 (299)
Q Consensus       199 ---------------------------------------------------------------------~~~l~~L~~L~  209 (299)
                                                                                           +..+++|+.|+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld  638 (768)
T 3rgz_A          559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD  638 (768)
T ss_dssp             GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred             hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence                                                                                 22356788999


Q ss_pred             CCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCC
Q 022302          210 LSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ  287 (299)
Q Consensus       210 Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~  287 (299)
                      +++|  .+.|.+| ..++.+++|+.|++++|++++.+  .++.+++|+.|+|++|+++|.+|+.++.+++|++|++++|+
T Consensus       639 Ls~N--~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          639 MSYN--MLSGYIP-KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CCSS--CCBSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             CcCC--cccccCC-HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            9999  8888888 78899999999999999998754  38899999999999999999999999999999999999999


Q ss_pred             CCCccCCCc
Q 022302          288 NLTTLGKPL  296 (299)
Q Consensus       288 l~g~ip~~~  296 (299)
                      ++|.||+.-
T Consensus       716 l~g~iP~~~  724 (768)
T 3rgz_A          716 LSGPIPEMG  724 (768)
T ss_dssp             EEEECCSSS
T ss_pred             ccccCCCch
Confidence            999999753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=2.3e-24  Score=183.49  Aligned_cols=191  Identities=25%  Similarity=0.286  Sum_probs=160.8

Q ss_pred             CCCCCCCceEecCCCCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCC
Q 022302           77 DCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQ  155 (299)
Q Consensus        77 ~~c~~w~gv~C~~~~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~  155 (299)
                      +|+ .|.|..|..   ....+++++ ++.. +          +. .+  .+++++|++++|.+.+..+.    .+..+++
T Consensus         3 ~Cp-~~~gC~C~~---~~~~l~~~~~~l~~-~----------p~-~~--~~~l~~L~L~~n~l~~~~~~----~~~~l~~   60 (251)
T 3m19_A            3 TCE-TVTGCTCNE---GKKEVDCQGKSLDS-V----------PS-GI--PADTEKLDLQSTGLATLSDA----TFRGLTK   60 (251)
T ss_dssp             -CH-HHHSSEEEG---GGTEEECTTCCCSS-C----------CS-CC--CTTCCEEECTTSCCCCCCTT----TTTTCTT
T ss_pred             cCC-CCCceEcCC---CCeEEecCCCCccc-c----------CC-CC--CCCCCEEEccCCCcCccCHh----HhcCccc
Confidence            466 899999963   233566766 4433 1          11 12  25799999999999999887    8999999


Q ss_pred             CCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEE
Q 022302          156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL  235 (299)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L  235 (299)
                      |++|++++|.+++..+..+..+++|++|++++|++++ +++..+..+++|++|++++|  .+.+..+ ..+..+++|++|
T Consensus        61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N--~l~~~~~-~~~~~l~~L~~L  136 (251)
T 3m19_A           61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGN--QLKSLPS-GVFDRLTKLKEL  136 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCCEE
T ss_pred             CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCC--cCCCcCh-hHhccCCcccEE
Confidence            9999999999999888889999999999999999995 55557899999999999999  6665444 668899999999


Q ss_pred             ECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccC
Q 022302          236 DLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG  293 (299)
Q Consensus       236 ~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip  293 (299)
                      ++++|++++.++  +..+++|++|+|++|++++..+..+..+++|++|++++|++.+..+
T Consensus       137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            999999998874  8899999999999999998878889999999999999999987633

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=4.9e-24  Score=195.86  Aligned_cols=193  Identities=26%  Similarity=0.320  Sum_probs=130.0

Q ss_pred             CCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhh
Q 022302           81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF  150 (299)
Q Consensus        81 ~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  150 (299)
                      .|..|.|...         ...++.+++++ .+.+           +.+..|.++++|++|+|++|.+.+..+.    .|
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~  108 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQI-----------IKVNSFKHLRHLEILQLSRNHIRTIEIG----AF  108 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE-----------ECTTTTSSCSSCCEEECCSSCCCEECGG----GG
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe-----------eCHHHhhCCCCCCEEECCCCcCCccChh----hc
Confidence            3667888642         13455666666 4433           4455678888888888888888887766    77


Q ss_pred             cCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCC
Q 022302          151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT  230 (299)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~  230 (299)
                      .++++|++|+|++|+++...+..+..+++|++|++++|+++. ++...|..+++|++|++++|  ...+.++...+..++
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~  185 (440)
T 3zyj_A          109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGEL--KRLSYISEGAFEGLS  185 (440)
T ss_dssp             TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCS
T ss_pred             cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCC--CCcceeCcchhhccc
Confidence            888888888888888887666678888888888888888874 55556777777777777776  445555545666677


Q ss_pred             CCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCc
Q 022302          231 NLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTT  291 (299)
Q Consensus       231 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~  291 (299)
                      +|++|++++|+++..+.+..+++|+.|+|++|.+++..|..+..+++|++|++++|++.+.
T Consensus       186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  246 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI  246 (440)
T ss_dssp             SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             ccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence            7777777777766666555666666666666666555555555555555555555554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=2.5e-25  Score=195.57  Aligned_cols=169  Identities=24%  Similarity=0.296  Sum_probs=155.3

Q ss_pred             cccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCC-CCcEEeCCCCcCCCcchh
Q 022302          118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLT-SLTTLILSDNSIEGSRTK  196 (299)
Q Consensus       118 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~  196 (299)
                      .+..+.++++|++|++++|.+.+.+|.    .+..+++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|.
T Consensus       117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~  192 (313)
T 1ogq_A          117 IPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP  192 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred             CCHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence            355788999999999999999998887    889999999999999999999999999998 999999999999987776


Q ss_pred             hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCC
Q 022302          197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANL  275 (299)
Q Consensus       197 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  275 (299)
                       .+..+. |++|++++|  .+.+..+ ..+..+++|++|++++|.+++.. .+..+++|++|++++|.+++.+|..+..+
T Consensus       193 -~~~~l~-L~~L~Ls~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  267 (313)
T 1ogq_A          193 -TFANLN-LAFVDLSRN--MLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             -GGGGCC-CSEEECCSS--EEEECCG-GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             -HHhCCc-ccEEECcCC--cccCcCC-HHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcC
Confidence             788887 999999999  7777777 78899999999999999998754 47888999999999999999999999999


Q ss_pred             CCCCEEecCCCCCCCccCCC
Q 022302          276 TNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       276 ~~L~~L~l~~N~l~g~ip~~  295 (299)
                      ++|++|++++|+++|.+|+.
T Consensus       268 ~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          268 KFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             TTCCEEECCSSEEEEECCCS
T ss_pred             cCCCEEECcCCcccccCCCC
Confidence            99999999999999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=1.4e-23  Score=181.82  Aligned_cols=180  Identities=24%  Similarity=0.217  Sum_probs=122.4

Q ss_pred             cEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCccc
Q 022302           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSI  170 (299)
Q Consensus        93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~  170 (299)
                      .++.+++++ .+.+           +.+..+.++++|++|++++|.+++..+.    .+..+++|++|++++|. +....
T Consensus        33 ~l~~L~l~~n~i~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~l~~~~   97 (285)
T 1ozn_A           33 ASQRIFLHGNRISH-----------VPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVD   97 (285)
T ss_dssp             TCSEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCC
T ss_pred             CceEEEeeCCcCCc-----------cCHHHcccCCCCCEEECCCCccceeCHh----hcCCccCCCEEeCCCCCCccccC
Confidence            566677766 4433           3344567777777777777777776665    67777777777777776 66555


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--c
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--L  248 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l  248 (299)
                      |..+..+++|++|++++|.+++..+ ..+..+++|++|++++|  .+.+..+ ..+..+++|++|++++|++++.+.  +
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDN--ALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAF  173 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             HHHhcCCcCCCEEECCCCcCCEECH-hHhhCCcCCCEEECCCC--cccccCH-hHhccCCCccEEECCCCcccccCHHHh
Confidence            6667777777777777777775333 35677777777777777  5544333 456677777777777777766553  6


Q ss_pred             cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCc
Q 022302          249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTT  291 (299)
Q Consensus       249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~  291 (299)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|++++.
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence            6677777777777777766677777777777777777777653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=6.8e-23  Score=176.44  Aligned_cols=180  Identities=26%  Similarity=0.254  Sum_probs=149.9

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.+++.+ .+..             ...+..+++|++|++++|.+.+. +     .+..+++|++|++++|.+++..
T Consensus        41 ~~L~~L~l~~~~i~~-------------~~~l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~L~~n~l~~~~  101 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS-------------VQGIQYLPNVRYLALGGNKLHDI-S-----ALKELTNLTYLILTGNQLQSLP  101 (272)
T ss_dssp             TTCCEEECTTSCCCC-------------CTTGGGCTTCCEEECTTSCCCCC-G-----GGTTCTTCCEEECTTSCCCCCC
T ss_pred             cceeeeeeCCCCccc-------------ccccccCCCCcEEECCCCCCCCc-h-----hhcCCCCCCEEECCCCccCccC
Confidence            3567777776 4332             23477789999999999999874 3     6888999999999999999877


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--c
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--L  248 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l  248 (299)
                      +..+..+++|++|++++|++++ +++..+..+++|++|++++|  .+.+..+ ..+..+++|++|++++|++++.++  +
T Consensus       102 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~  177 (272)
T 3rfs_A          102 NGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHN--QLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEGVF  177 (272)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             hhHhcCCcCCCEEECCCCcCCc-cCHHHhccCCCCCEEECCCC--ccCccCH-HHhccCccCCEEECCCCCcCccCHHHh
Confidence            7778899999999999999986 45446889999999999999  6665544 667889999999999999988765  7


Q ss_pred             cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302          249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|.
T Consensus       178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            8899999999999999987787889999999999999998887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.7e-22  Score=173.80  Aligned_cols=137  Identities=25%  Similarity=0.285  Sum_probs=69.2

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  200 (299)
                      .|.++++|++|++++|.+.+..+.    .+..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+.
T Consensus        80 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~  154 (270)
T 2o6q_A           80 IFKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD  154 (270)
T ss_dssp             TTSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred             hhcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHcc
Confidence            344555555555555555554443    44555555555555555554444445555555555555555553 3332345


Q ss_pred             CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccC
Q 022302          201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYI  265 (299)
Q Consensus       201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~  265 (299)
                      .+++|++|++++|  .+.+..+ ..+..+++|++|++++|++++.+.  +..+++|+.|++++|.+.
T Consensus       155 ~l~~L~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          155 KLTSLKELRLYNN--QLKRVPE-GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TCTTCCEEECCSS--CCSCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcccceeEecCC--cCcEeCh-hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            5555555555555  3333222 344455555555555555554432  444555555555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=2.6e-23  Score=181.85  Aligned_cols=201  Identities=24%  Similarity=0.321  Sum_probs=111.7

Q ss_pred             CCCCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcc--hhh-
Q 022302           79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIY--ENR-  145 (299)
Q Consensus        79 c~~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~-  145 (299)
                      | .|.++.|...         ...++.+++++ .+..           ++...+.++++|++|++++|.+....  +.. 
T Consensus         7 C-~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   74 (306)
T 2z66_A            7 C-SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----------LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD   74 (306)
T ss_dssp             E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred             e-CCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-----------cCHhHhhccccCCEEECCCCccCcccCccccc
Confidence            5 8999999752         13677788877 4432           22233455555555555555554321  110 


Q ss_pred             ------------------hHHhhcCCCCCCEEECCCCCCCccch-HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302          146 ------------------AYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (299)
Q Consensus       146 ------------------~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  206 (299)
                                        +...+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+. .+..+++|+
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~  153 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLE  153 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCC
T ss_pred             ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCC
Confidence                              00023444455555555554443322 3445555555555555555433322 455556666


Q ss_pred             EEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302          207 VLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL  283 (299)
Q Consensus       207 ~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  283 (299)
                      +|++++|  .+.+ ..| ..+..+++|++|++++|++++.+  .+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus       154 ~L~l~~n--~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          154 VLKMAGN--SFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             EEECTTC--EEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred             EEECCCC--ccccccch-hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence            6666666  4443 233 45566666666666666666553  2566667777777777776555556666677777777


Q ss_pred             CCCCCCCccCCC
Q 022302          284 SDNQNLTTLGKP  295 (299)
Q Consensus       284 ~~N~l~g~ip~~  295 (299)
                      ++|++.+..|..
T Consensus       231 ~~N~l~~~~~~~  242 (306)
T 2z66_A          231 SLNHIMTSKKQE  242 (306)
T ss_dssp             TTSCCCBCSSSS
T ss_pred             CCCCCcccCHHH
Confidence            777776665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=1e-23  Score=186.58  Aligned_cols=165  Identities=18%  Similarity=0.160  Sum_probs=118.5

Q ss_pred             ccccCCCCCccEEeCCCCCCCCcchhhhH-----HhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCc
Q 022302          119 MSLFHPFEELQRLDLPGNWFTGIYENRAY-----DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS  193 (299)
Q Consensus       119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  193 (299)
                      +..++++++|++|++++|.+.+.+|..+.     ..+.++++|++|++++|.++ .+|..++.+++|++|++++|++++ 
T Consensus       143 p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence            33567777888888888777776665110     01233777888888888777 567777778888888888888774 


Q ss_pred             chhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCccc
Q 022302          194 RTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEG  271 (299)
Q Consensus       194 ~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~  271 (299)
                      +|. .+..+++|++|++++|  ...+.+| ..+..+++|++|++++|++.+..  .+..+++|++|++++|.+.+.+|+.
T Consensus       221 l~~-~l~~l~~L~~L~Ls~n--~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          221 LGP-AIHHLPKLEELDLRGC--TALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             CCG-GGGGCTTCCEEECTTC--TTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             Cch-hhccCCCCCEEECcCC--cchhhhH-HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            554 5777788888888887  6677776 66777788888888887766543  3677778888888888777788888


Q ss_pred             ccCCCCCCEEecCCCCCC
Q 022302          272 LANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       272 l~~l~~L~~L~l~~N~l~  289 (299)
                      ++++++|+.+++..|.+.
T Consensus       297 l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          297 IAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GGGSCTTCEEECCGGGSC
T ss_pred             HhhccCceEEeCCHHHHH
Confidence            888888888877766553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=7.5e-23  Score=184.91  Aligned_cols=163  Identities=23%  Similarity=0.195  Sum_probs=89.4

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      ..+..+++|++|++++|.+.+..+.    .+..+++|++|++++|.++...+..+..+++|++|++++|.+.+ +++..+
T Consensus        87 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~  161 (390)
T 3o6n_A           87 YAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTF  161 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTT
T ss_pred             hhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhc
Confidence            3455566666666666666655554    45566666666666666654333334556666666666666654 332345


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchhhhcc-------------------------------------CCCCcEEECCCCCC
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRLGLAN-------------------------------------LTNLKKLDLGSCGI  242 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~-------------------------------------l~~L~~L~Ls~n~l  242 (299)
                      ..+++|++|++++|  .+.+... ..+..                                     .++|+.|++++|.+
T Consensus       162 ~~l~~L~~L~l~~n--~l~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l  238 (390)
T 3o6n_A          162 QATTSLQNLQLSSN--RLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL  238 (390)
T ss_dssp             SSCTTCCEEECCSS--CCSBCCG-GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC
T ss_pred             cCCCCCCEEECCCC--cCCcccc-ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCC
Confidence            66666666666666  3322100 00000                                     11233344444444


Q ss_pred             CCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          243 TTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       243 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      ++.+.+..+++|++|++++|.+++..|..+..+++|++|++++|++.+
T Consensus       239 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (390)
T 3o6n_A          239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  286 (390)
T ss_dssp             CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred             cccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence            443345556667777777777776666667667777777777776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=2.3e-22  Score=174.07  Aligned_cols=182  Identities=25%  Similarity=0.288  Sum_probs=157.1

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCC-CCCcchhhhHHhhcCCCCCCEEECCCCCCCcc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW-FTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS  169 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  169 (299)
                      .+++.+++++ .+.+           +.+..+.++++|++|++++|. +....+.    .+..+++|++|++++|.+++.
T Consensus        56 ~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~  120 (285)
T 1ozn_A           56 RNLTILWLHSNVLAR-----------IDAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQEL  120 (285)
T ss_dssp             TTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCC
T ss_pred             CCCCEEECCCCccce-----------eCHhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEE
Confidence            4677888877 4444           345678899999999999997 7777676    789999999999999999988


Q ss_pred             chHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--c
Q 022302          170 ILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--G  247 (299)
Q Consensus       170 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~  247 (299)
                      .|..+..+++|++|++++|++++ ++...+..+++|++|++++|  .+.+..+ ..+..+++|++|++++|.+++..  .
T Consensus       121 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~  196 (285)
T 1ozn_A          121 GPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGN--RISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHA  196 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS--CCCEECT-TTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             CHhHhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCC--cccccCH-HHhcCccccCEEECCCCcccccCHhH
Confidence            88899999999999999999985 55557899999999999999  6664433 67889999999999999998874  4


Q ss_pred             ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCcc
Q 022302          248 LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL  292 (299)
Q Consensus       248 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~i  292 (299)
                      +..+++|+.|++++|.+++..++.+..+++|++|++++|++....
T Consensus       197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            888999999999999999877788999999999999999987543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=2e-22  Score=192.04  Aligned_cols=163  Identities=23%  Similarity=0.196  Sum_probs=88.5

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      ..|+.+++|++|++++|.+++..+.    .|+.+++|++|++++|.+++..+..++.+++|++|++++|.+++..| ..+
T Consensus        93 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~  167 (597)
T 3oja_B           93 YAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTF  167 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTT
T ss_pred             HHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhh
Confidence            3455555566666666655555554    45555666666666666554444444555666666666666554322 245


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchhhhcc-------------------------------------CCCCcEEECCCCCC
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRLGLAN-------------------------------------LTNLKKLDLGSCGI  242 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~-------------------------------------l~~L~~L~Ls~n~l  242 (299)
                      ..+++|++|++++|  .+.+... ..+..                                     .++|+.|++++|.+
T Consensus       168 ~~l~~L~~L~L~~N--~l~~~~~-~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l  244 (597)
T 3oja_B          168 QATTSLQNLQLSSN--RLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL  244 (597)
T ss_dssp             TTCTTCCEEECTTS--CCSBCCG-GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC
T ss_pred             hcCCcCcEEECcCC--CCCCcCh-hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCC
Confidence            55666666666665  3322110 00000                                     01233333333333


Q ss_pred             CCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          243 TTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       243 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      ++...+..+++|+.|+|++|.+++..|..++.+++|++|++++|++++
T Consensus       245 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  292 (597)
T 3oja_B          245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  292 (597)
T ss_dssp             CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred             CCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence            343345566677777777777776667777777777777777777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=5e-22  Score=182.79  Aligned_cols=126  Identities=26%  Similarity=0.331  Sum_probs=78.4

Q ss_pred             ceEecCCC--------CcEEEeeeCc-cccccccCCCCcc--------------ccccccccCCCCCccEEeCCCCCCCC
Q 022302           84 GVKCNATT--------RRVMQLSLNE-TIKFNYSSGSGSA--------------LLLNMSLFHPFEELQRLDLPGNWFTG  140 (299)
Q Consensus        84 gv~C~~~~--------~~v~~l~l~~-~l~~~~~~~~~~~--------------~~~~~~~~~~l~~L~~L~L~~n~l~~  140 (299)
                      .|.|....        .+++.+++++ .+.+..+......              ..+.+..|.++++|++|++++|.+.+
T Consensus        14 ~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~   93 (455)
T 3v47_A           14 NAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ   93 (455)
T ss_dssp             EEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred             ccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence            37776422        4688899988 5554211111100              02234456667777777777777766


Q ss_pred             cchhhhHHhhcCCCCCCEEECCCCCCCccchHh--hccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCC
Q 022302          141 IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN  213 (299)
Q Consensus       141 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n  213 (299)
                      ..|.    .+.++++|++|++++|.+++..+..  +..+++|++|++++|++++..|...+..+++|++|++++|
T Consensus        94 ~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           94 LETG----AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             ECTT----TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             cChh----hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            6665    6677777777777777776655544  6667777777777777765545433667777777777777

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.8e-22  Score=166.84  Aligned_cols=156  Identities=24%  Similarity=0.231  Sum_probs=123.2

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.+++..+.    .+..+++|++|++++|++++..+..+..+++|++|++++|++++ ++...+..+++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  102 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQL  102 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCC
Confidence            5788888888888877665    67788888888888888887666667888888888888888885 554467888888


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL  283 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  283 (299)
                      ++|++++|  .+.+..+ ..+..+++|++|++++|++++.+.  +..+++|++|++++|.+.+       .+++|+.|++
T Consensus       103 ~~L~L~~N--~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~  172 (208)
T 2o6s_A          103 KELALNTN--QLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE  172 (208)
T ss_dssp             CEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHH
T ss_pred             CEEEcCCC--cCcccCH-hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHH
Confidence            88888888  6655443 567788888888888888887664  6778888888888887764       3457888888


Q ss_pred             CCCCCCCccCCCc
Q 022302          284 SDNQNLTTLGKPL  296 (299)
Q Consensus       284 ~~N~l~g~ip~~~  296 (299)
                      +.|+++|.+|+++
T Consensus       173 ~~n~~~g~ip~~~  185 (208)
T 2o6s_A          173 WINKHSGVVRNSA  185 (208)
T ss_dssp             HHHHCTTTBBCTT
T ss_pred             HHHhCCceeeccC
Confidence            8888888888754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=5.5e-23  Score=183.45  Aligned_cols=199  Identities=26%  Similarity=0.326  Sum_probs=158.9

Q ss_pred             CCCCCCCCceEecCCC-----------CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcch
Q 022302           76 SDCCDDWEGVKCNATT-----------RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYE  143 (299)
Q Consensus        76 ~~~c~~w~gv~C~~~~-----------~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  143 (299)
                      ...| .|.|+ |+...           .+++.+++++ .+.+           +....+.++++|++|++++|.+++..+
T Consensus        27 ~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (353)
T 2z80_A           27 SLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----------ISNSDLQRCVNLQALVLTSNGINTIEE   93 (353)
T ss_dssp             CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred             CCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-----------cCHHHhccCCCCCEEECCCCccCccCH
Confidence            4557 89888 76422           2566777766 4443           345568899999999999999999877


Q ss_pred             hhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh-hhhcCCCCCCEEECCCCcCCCCCccc
Q 022302          144 NRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSGSLT  222 (299)
Q Consensus       144 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~Ls~n~~~~~~~~~  222 (299)
                      .    .+.++++|++|++++|.+++..+..+..+++|++|++++|++++ ++. ..+..+++|++|++++|  ...+.++
T Consensus        94 ~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n--~~~~~~~  166 (353)
T 2z80_A           94 D----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNM--DTFTKIQ  166 (353)
T ss_dssp             T----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEES--SSCCEEC
T ss_pred             h----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCC--ccccccC
Confidence            6    78999999999999999997766678999999999999999984 554 46889999999999998  5555555


Q ss_pred             hhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302          223 RLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       223 ~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      ...+..+++|++|++++|++++..  .+..+++|++|++++|.++...+..+..+++|++|++++|++.+..+.
T Consensus       167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  240 (353)
T 2z80_A          167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS  240 (353)
T ss_dssp             TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred             HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence            467889999999999999998763  488889999999999998743333445689999999999999875443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=5e-22  Score=184.08  Aligned_cols=196  Identities=26%  Similarity=0.295  Sum_probs=159.8

Q ss_pred             CCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhh
Q 022302           81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF  150 (299)
Q Consensus        81 ~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  150 (299)
                      .|..|.|...         ...++.|++++ .+.+           +.+..|.++++|++|++++|.+++..|.    .|
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~   76 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-----------LNQDEFASFPHLEELELNENIVSAVEPG----AF   76 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCEECTT----TT
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-----------ECHhHccCCCCCCEEECCCCccCEeChh----hh
Confidence            4678888642         23566677776 4443           4456788999999999999999998887    88


Q ss_pred             cCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCC
Q 022302          151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT  230 (299)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~  230 (299)
                      .++++|++|++++|.+++..+..+.++++|++|++++|++.+..+ ..+..+++|++|++++|  .+.+..+ ..+..++
T Consensus        77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~  152 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDN--DLVYISH-RAFSGLN  152 (477)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCT--TCCEECT-TSSTTCT
T ss_pred             hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCC--ccceeCh-hhccCCC
Confidence            999999999999999987666678899999999999999986444 47899999999999999  6665555 6788899


Q ss_pred             CCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302          231 NLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       231 ~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~  295 (299)
                      +|+.|++++|++++.+.  +..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.+|+.
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  219 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN  219 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred             CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence            99999999999888763  788889999999999988877778888888888888888877777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.1e-22  Score=172.31  Aligned_cols=177  Identities=24%  Similarity=0.233  Sum_probs=154.2

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.+++++ .+.+             ...+.++++|++|++++|.+++..+.    .+..+++|++|++++|++++..
T Consensus        63 ~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~  125 (272)
T 3rfs_A           63 PNVRYLALGGNKLHD-------------ISALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLP  125 (272)
T ss_dssp             TTCCEEECTTSCCCC-------------CGGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCC
T ss_pred             CCCcEEECCCCCCCC-------------chhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccC
Confidence            4688888887 5544             23678899999999999999998876    7899999999999999999888


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--c
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--L  248 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l  248 (299)
                      +..+..+++|++|++++|++++ +++..+..+++|++|++++|  .+.+..+ ..+..+++|++|++++|++++.++  +
T Consensus       126 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (272)
T 3rfs_A          126 DGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYN--QLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDGVF  201 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             HHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCC--CcCccCH-HHhcCCccCCEEECCCCcCCccCHHHH
Confidence            8888999999999999999996 55557899999999999999  7776554 678899999999999999998765  7


Q ss_pred             cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      ..+++|+.|++++|.+.+.       +++|+.+++..|+++|.+|.++
T Consensus       202 ~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          202 DRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             TTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred             hCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence            8999999999999988854       4578999999999999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=1.7e-21  Score=178.93  Aligned_cols=184  Identities=23%  Similarity=0.247  Sum_probs=148.8

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.|++++ .+.+           +.+..|.++++|++|++++|.++...+.    .+..+++|++|++++|.++...
T Consensus        88 ~~L~~L~Ls~n~i~~-----------i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~  152 (440)
T 3zyj_A           88 RHLEILQLSRNHIRT-----------IEIGAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKELWLRNNPIESIP  152 (440)
T ss_dssp             SSCCEEECCSSCCCE-----------ECGGGGTTCSSCCEEECCSSCCSSCCTT----TSCSCSSCCEEECCSCCCCEEC
T ss_pred             CCCCEEECCCCcCCc-----------cChhhccCCccCCEEECCCCcCCeeCHh----HhhccccCceeeCCCCcccccC
Confidence            4677788877 4443           4456788899999999999999988776    7889999999999999998777


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cc
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GL  248 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l  248 (299)
                      +..+..+++|++|++++|+..+.++...|..+++|++|++++|  .+. .+|  .+..+++|++|++++|++++..  .+
T Consensus       153 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n--~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~  227 (440)
T 3zyj_A          153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC--NLR-EIP--NLTPLIKLDELDLSGNHLSAIRPGSF  227 (440)
T ss_dssp             TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS--CCS-SCC--CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred             HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC--cCc-ccc--ccCCCcccCEEECCCCccCccChhhh
Confidence            7788889999999999866555677667888999999999998  554 334  4678888999999999888764  37


Q ss_pred             cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302          249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~  295 (299)
                      ..+++|+.|++++|++++..+..+..+++|++|+|++|++++..++.
T Consensus       228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  274 (440)
T 3zyj_A          228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL  274 (440)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence            78888999999999888888888888888999999998888644443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=3e-21  Score=170.51  Aligned_cols=195  Identities=25%  Similarity=0.325  Sum_probs=126.9

Q ss_pred             CCCCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHH
Q 022302           79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD  148 (299)
Q Consensus        79 c~~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  148 (299)
                      | .|..+.|...         ...++.+++++ .+.+           +....+.++++|++|++++|.+++..|.    
T Consensus        31 c-~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~----   94 (330)
T 1xku_A           31 C-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----------IKDGDFKNLKNLHTLILINNKISKISPG----   94 (330)
T ss_dssp             E-ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----------BCTTTTTTCTTCCEEECCSSCCCCBCTT----
T ss_pred             C-CCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-----------eChhhhccCCCCCEEECCCCcCCeeCHH----
Confidence            5 8999999742         23566677776 4443           3445678888999999999998888776    


Q ss_pred             hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302          149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN  228 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~  228 (299)
                      .+..+++|++|++++|.++. +|..+.  ++|++|++++|++.+ ++...+..+++|++|++++|.+...+..+ ..+..
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~  169 (330)
T 1xku_A           95 AFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQG  169 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGG
T ss_pred             HhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcCh-hhccC
Confidence            78888888888888888773 444332  677777777777764 44445677777777777777222222333 45556


Q ss_pred             CCCCcEEECCCCCCCCcc-----------------------cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCC
Q 022302          229 LTNLKKLDLGSCGITTIQ-----------------------GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD  285 (299)
Q Consensus       229 l~~L~~L~Ls~n~l~~~~-----------------------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~  285 (299)
                      +++|++|++++|.++..+                       .+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus       170 l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  249 (330)
T 1xku_A          170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  249 (330)
T ss_dssp             CTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             CCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence            666666666555554432                       255556666666666666655555666666666666666


Q ss_pred             CCCCCccCCC
Q 022302          286 NQNLTTLGKP  295 (299)
Q Consensus       286 N~l~g~ip~~  295 (299)
                      |++. .+|+.
T Consensus       250 N~l~-~lp~~  258 (330)
T 1xku_A          250 NKLV-KVPGG  258 (330)
T ss_dssp             SCCS-SCCTT
T ss_pred             CcCc-cCChh
Confidence            6665 45554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=1.8e-21  Score=179.32  Aligned_cols=184  Identities=21%  Similarity=0.238  Sum_probs=148.2

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.|++++ .+.+           +.+..|.++++|++|+|++|.+++..+.    .+..+++|++|++++|.++...
T Consensus        99 ~~L~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~  163 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQ-----------IEVGAFNGLASLNTLELFDNWLTVIPSG----AFEYLSKLRELWLRNNPIESIP  163 (452)
T ss_dssp             TTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSBCCTT----TSSSCTTCCEEECCSCCCCEEC
T ss_pred             CCCCEEECCCCccCC-----------cChhhccCcccCCEEECCCCcCCccChh----hhcccCCCCEEECCCCCcceeC
Confidence            4677778777 4443           4456788899999999999999988776    7888999999999999998766


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cc
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GL  248 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l  248 (299)
                      +..+..+++|++|++++|+..+.++...+..+++|++|++++|  .+.+. |  .+..+++|++|++++|.+++..  .+
T Consensus       164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n--~l~~~-~--~~~~l~~L~~L~Ls~N~l~~~~~~~~  238 (452)
T 3zyi_A          164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC--NIKDM-P--NLTPLVGLEELEMSGNHFPEIRPGSF  238 (452)
T ss_dssp             TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS--CCSSC-C--CCTTCTTCCEEECTTSCCSEECGGGG
T ss_pred             HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC--ccccc-c--cccccccccEEECcCCcCcccCcccc
Confidence            6788889999999999866555677667888899999999998  55543 3  4677888999999998888764  37


Q ss_pred             cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302          249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~  295 (299)
                      ..+++|+.|++++|++++..|..+..+++|++|++++|++++..++.
T Consensus       239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred             cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence            88888888888888888888888888888888888888887644443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=8.5e-22  Score=172.17  Aligned_cols=164  Identities=25%  Similarity=0.317  Sum_probs=145.8

Q ss_pred             ccCCCCCccEEeCCCCCCCCcch-hhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYE-NRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      .+..+++|++|++++|.+.+..+ .    .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+...+..+
T Consensus        96 ~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  171 (306)
T 2z66_A           96 NFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  171 (306)
T ss_dssp             EEETCTTCCEEECTTSEEESSTTTT----TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             hcCCCCCCCEEECCCCcccccccch----hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence            47789999999999999988765 3    688999999999999999988888899999999999999999863333478


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCC-
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLT-  276 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-  276 (299)
                      ..+++|++|++++|  .+.+..+ ..+..+++|++|++++|.+++.+  .+..+++|+.|++++|.+++..|..+..++ 
T Consensus       172 ~~l~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  248 (306)
T 2z66_A          172 TELRNLTFLDLSQC--QLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS  248 (306)
T ss_dssp             TTCTTCCEEECTTS--CCCEECT-TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred             hhCcCCCEEECCCC--CcCCcCH-HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence            99999999999999  7776656 78899999999999999998875  378899999999999999999999999985 


Q ss_pred             CCCEEecCCCCCCCc
Q 022302          277 NLQVLDLSDNQNLTT  291 (299)
Q Consensus       277 ~L~~L~l~~N~l~g~  291 (299)
                      +|++|++++|++.+.
T Consensus       249 ~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          249 SLAFLNLTQNDFACT  263 (306)
T ss_dssp             TCCEEECTTCCEECS
T ss_pred             cCCEEEccCCCeecc
Confidence            999999999999764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=2e-21  Score=167.38  Aligned_cols=183  Identities=28%  Similarity=0.295  Sum_probs=108.4

Q ss_pred             cEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch
Q 022302           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (299)
Q Consensus        93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  171 (299)
                      .++.+++++ .+.+           +.+..+.++++|++|++++|.+.+..+.    .+..+++|++|++++|.+++..+
T Consensus        29 ~l~~L~ls~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~   93 (276)
T 2z62_A           29 STKNLDLSFNPLRH-----------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLAL   93 (276)
T ss_dssp             TCCEEECTTCCCCE-----------ECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECT
T ss_pred             CccEEECCCCcccc-----------cCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccCh
Confidence            466666666 4433           2233455556666666666666555444    45555666666666666555555


Q ss_pred             HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCc-----
Q 022302          172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTI-----  245 (299)
Q Consensus       172 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-----  245 (299)
                      ..+..+++|++|++++|++.+ ++...+..+++|++|++++|  .+.+ .+| ..+..+++|++|++++|++++.     
T Consensus        94 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n--~l~~~~l~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~  169 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHN--LIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (276)
T ss_dssp             TTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSS--CCCCCCCC-GGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             hhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCC--ccceecCc-hhhccCCCCCEEECCCCCCCcCCHHHh
Confidence            555555666666666655553 22223555555566666555  4433 123 4455555555555555555443     


Q ss_pred             -----------------------cc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302          246 -----------------------QG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       246 -----------------------~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                                             +. .....+|++|++++|.+++..+..+..+++|++|++++|++.+..|.
T Consensus       170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence                                   21 22334788888888888866666678889999999999998877653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=3.3e-22  Score=188.26  Aligned_cols=192  Identities=26%  Similarity=0.363  Sum_probs=152.9

Q ss_pred             CCCCCCceEecCCC-----------CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhh
Q 022302           78 CCDDWEGVKCNATT-----------RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENR  145 (299)
Q Consensus        78 ~c~~w~gv~C~~~~-----------~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  145 (299)
                      .| .|.|+ |+...           .+++.+++++ .+.+           ..+..+.++++|++|++++|.+++..+. 
T Consensus         3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-   68 (549)
T 2z81_A            3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-----------IGHGDLRACANLQVLILKSSRINTIEGD-   68 (549)
T ss_dssp             EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-----------ECSSTTSSCTTCCEEECTTSCCCEECTT-
T ss_pred             cC-CCCce-EECCCCccccccccCCCCccEEECcCCccCc-----------cChhhhhcCCcccEEECCCCCcCccChh-
Confidence            37 89998 86422           3577777777 5444           3455788999999999999999998876 


Q ss_pred             hHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCc-chhhhhcCCCCCCEEECCCCcCCCCCccchh
Q 022302          146 AYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS-RTKQGLANLRYLQVLDLSGNFNITSGSLTRL  224 (299)
Q Consensus       146 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~  224 (299)
                         .|..+++|++|++++|.+++..|..++.+++|++|++++|.+++. .|. .+..+++|++|++++|  ...+.++..
T Consensus        69 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n--~~~~~~~~~  142 (549)
T 2z81_A           69 ---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNV--ETFSEIRRI  142 (549)
T ss_dssp             ---TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEES--SSCCEECTT
T ss_pred             ---hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCC--ccccccCHh
Confidence               789999999999999999988888899999999999999999852 343 6889999999999999  766667656


Q ss_pred             hhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccc-cCCCCCCEEecCCCCCCC
Q 022302          225 GLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       225 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~l~~N~l~g  290 (299)
                      .+..+++|++|++++|++++..  .+..+++|++|++++|.+. .+|+.+ ..+++|++|++++|++.+
T Consensus       143 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             hhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence            7889999999999999988753  3777778888888888776 344433 467788888888888776

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=2.9e-21  Score=170.80  Aligned_cols=191  Identities=28%  Similarity=0.366  Sum_probs=117.7

Q ss_pred             CCCCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHH
Q 022302           79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD  148 (299)
Q Consensus        79 c~~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  148 (299)
                      | .|..+.|...         ..+++.+++++ .+.+           +.+..+.++++|++|++++|.+++..|.    
T Consensus        33 c-~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~----   96 (332)
T 2ft3_A           33 C-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-----------LRKDDFKGLQHLYALVLVNNKISKIHEK----   96 (332)
T ss_dssp             E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECGG----
T ss_pred             c-cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-----------cCHhHhhCCCCCcEEECCCCccCccCHh----
Confidence            5 8999999742         13566777776 4443           3345677788888888888888877666    


Q ss_pred             hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcC-------------
Q 022302          149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN-------------  215 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~-------------  215 (299)
                      .+..+++|++|++++|.++. +|..+.  ++|++|++++|++.+ ++...+..+++|++|++++|.+             
T Consensus        97 ~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  172 (332)
T 2ft3_A           97 AFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL  172 (332)
T ss_dssp             GSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred             HhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence            77778888888888877763 443332  566666666666663 3433466666666666666622             


Q ss_pred             -------------------------------CCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCC
Q 022302          216 -------------------------------ITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYN  262 (299)
Q Consensus       216 -------------------------------~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N  262 (299)
                                                     .+.+..+ ..+..+++|++|++++|++++.++  +..+++|++|++++|
T Consensus       173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  251 (332)
T 2ft3_A          173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN  251 (332)
T ss_dssp             CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence                                           1111111 334455555555665555555432  555666666666666


Q ss_pred             ccCccCcccccCCCCCCEEecCCCCCCCc
Q 022302          263 YYIHSSLEGLANLTNLQVLDLSDNQNLTT  291 (299)
Q Consensus       263 ~l~~~~p~~l~~l~~L~~L~l~~N~l~g~  291 (299)
                      +++ .+|..+..+++|++|++++|++++.
T Consensus       252 ~l~-~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          252 KLS-RVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             cCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence            666 5566666666666666666666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=2.5e-21  Score=166.81  Aligned_cols=157  Identities=27%  Similarity=0.237  Sum_probs=130.5

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.+++..+.    .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ +++..+..+++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCCEECTT----TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTC
T ss_pred             CCccEEECCCCcccccCHh----HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhhhcCCccc
Confidence            4799999999999998876    78999999999999999998777789999999999999999986 454479999999


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc--c-cccCCCCCCEEeCCCCccCccCcccccCCCCCC---
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI--Q-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ---  279 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~---  279 (299)
                      ++|++++|  .+.+..+ ..+..+++|++|++++|.+++.  + .+..+++|++|++++|++++..+..+..+++|+   
T Consensus       103 ~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~  179 (276)
T 2z62_A          103 QKLVAVET--NLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  179 (276)
T ss_dssp             CEEECTTS--CCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             cEEECCCC--CccccCc-hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence            99999999  6665444 5688999999999999999873  2 488999999999999999876666565444444   


Q ss_pred             -EEecCCCCCCC
Q 022302          280 -VLDLSDNQNLT  290 (299)
Q Consensus       280 -~L~l~~N~l~g  290 (299)
                       +|++++|++.+
T Consensus       180 l~L~ls~n~l~~  191 (276)
T 2z62_A          180 LSLDLSLNPMNF  191 (276)
T ss_dssp             EEEECCSSCCCE
T ss_pred             eeeecCCCcccc
Confidence             55555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1e-20  Score=164.33  Aligned_cols=161  Identities=28%  Similarity=0.269  Sum_probs=123.8

Q ss_pred             ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh
Q 022302          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (299)
Q Consensus       117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  196 (299)
                      +.+..+.++++|++|++++|.+++..+      ...+++|++|++++|.++ .+|..+..+++|++|++++|++++ +++
T Consensus        46 ~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~  117 (290)
T 1p9a_G           46 FSLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPL  117 (290)
T ss_dssp             EEGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC-CCS
T ss_pred             cCHHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcc-cCH
Confidence            345567788888888888888877643      267888888888888887 466677788888888888888875 454


Q ss_pred             hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccC
Q 022302          197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLAN  274 (299)
Q Consensus       197 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~  274 (299)
                      ..|..+++|++|++++|  .+.+..+ ..+..+++|+.|++++|+++..+.  +..+++|+.|++++|+++ .+|+.+..
T Consensus       118 ~~~~~l~~L~~L~L~~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~  193 (290)
T 1p9a_G          118 GALRGLGELQELYLKGN--ELKTLPP-GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (290)
T ss_dssp             STTTTCTTCCEEECTTS--CCCCCCT-TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             HHHcCCCCCCEEECCCC--CCCccCh-hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence            46788888888888888  6554433 567778888888888888887764  567888888888888888 67777777


Q ss_pred             CCCCCEEecCCCCCC
Q 022302          275 LTNLQVLDLSDNQNL  289 (299)
Q Consensus       275 l~~L~~L~l~~N~l~  289 (299)
                      +++|+.|++++|++.
T Consensus       194 ~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          194 SHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TCCCSEEECCSCCBC
T ss_pred             cccCCeEEeCCCCcc
Confidence            888888888888875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=8.3e-21  Score=164.97  Aligned_cols=159  Identities=28%  Similarity=0.226  Sum_probs=140.0

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      +++++|++++|.+++..+.    .+..+++|++|++++|.+++..+  .+.+++|++|++++|+++ .+|. .+..+++|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L  102 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPL-LGQTLPAL  102 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCC-CTTTCTTC
T ss_pred             CCCCEEEcCCCcCCccCHH----HhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCch-hhccCCCC
Confidence            6899999999999998887    89999999999999999986433  378999999999999998 5775 78899999


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL  283 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  283 (299)
                      ++|++++|  .+.+..+ ..+..+++|++|++++|++++.++  +..+++|+.|++++|++++..+..+..+++|++|++
T Consensus       103 ~~L~l~~N--~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          103 TVLDVSFN--RLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (290)
T ss_dssp             CEEECCSS--CCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCC--cCcccCH-HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence            99999999  7765554 678999999999999999998765  778999999999999999666667789999999999


Q ss_pred             CCCCCCCccCCCc
Q 022302          284 SDNQNLTTLGKPL  296 (299)
Q Consensus       284 ~~N~l~g~ip~~~  296 (299)
                      ++|++. .+|+.+
T Consensus       180 ~~N~l~-~ip~~~  191 (290)
T 1p9a_G          180 QENSLY-TIPKGF  191 (290)
T ss_dssp             CSSCCC-CCCTTT
T ss_pred             CCCcCC-ccChhh
Confidence            999998 577654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=4.5e-21  Score=176.42  Aligned_cols=176  Identities=27%  Similarity=0.279  Sum_probs=136.6

Q ss_pred             ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHh-hccCCCCcEEeCCCCcCCCcch
Q 022302          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTLILSDNSIEGSRT  195 (299)
Q Consensus       117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p  195 (299)
                      ..+..++++++|++|++++|.+++..+..  ..+..+++|++|++++|.+++..|.. +..+++|++|++++|++.+..+
T Consensus        94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A           94 LETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             cChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            34667899999999999999999865531  13889999999999999999887765 8899999999999999986544


Q ss_pred             hhhhcC----------------------------------CCCCCEEECCCCcC--------------------------
Q 022302          196 KQGLAN----------------------------------LRYLQVLDLSGNFN--------------------------  215 (299)
Q Consensus       196 ~~~~~~----------------------------------l~~L~~L~Ls~n~~--------------------------  215 (299)
                      . .+..                                  +++|++|++++|.+                          
T Consensus       172 ~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~  250 (455)
T 3v47_A          172 E-DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY  250 (455)
T ss_dssp             T-TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred             h-hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence            3 3322                                  24566666666511                          


Q ss_pred             -----------------------------------CCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEe
Q 022302          216 -----------------------------------ITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALD  258 (299)
Q Consensus       216 -----------------------------------~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~  258 (299)
                                                         .+.+..+ ..+..+++|++|++++|++++.+  .+..+++|++|+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  329 (455)
T 3v47_A          251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN  329 (455)
T ss_dssp             TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccccchhhhccCcccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence                                               2222233 45677888888888888888764  477888999999


Q ss_pred             CCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          259 LSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       259 L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      +++|.+++..|..+..+++|++|++++|++++..|..+
T Consensus       330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  367 (455)
T 3v47_A          330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF  367 (455)
T ss_dssp             CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence            99999988778888899999999999999987777655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=1.7e-21  Score=170.98  Aligned_cols=160  Identities=25%  Similarity=0.239  Sum_probs=106.1

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCC-----CCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcc--h
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSL-----KQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSR--T  195 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p  195 (299)
                      ..+++|++|++++|.+++. |.    .+..+     ++|++|++++|++++..|..++.+++|++|++++|++.+.+  +
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             hcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            6677777777777777776 43    33333     77777777777777766677777777777777777766532  2


Q ss_pred             hhhh--cCCCCCCEEECCCCcCCCCC--ccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccC
Q 022302          196 KQGL--ANLRYLQVLDLSGNFNITSG--SLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSS  268 (299)
Q Consensus       196 ~~~~--~~l~~L~~L~Ls~n~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~  268 (299)
                      . .+  ..+++|++|++++|  .+.+  .++...+..+++|++|++++|++++.+   .+..+++|++|++++|.++ .+
T Consensus       193 ~-~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~i  268 (312)
T 1wwl_A          193 S-ALCPLKFPTLQVLALRNA--GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV  268 (312)
T ss_dssp             H-HSCTTSCTTCCEEECTTS--CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SC
T ss_pred             H-HHHhccCCCCCEEECCCC--cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hh
Confidence            2 23  66777777777777  4442  333234456677777777777777643   2445677777777777777 66


Q ss_pred             cccccCCCCCCEEecCCCCCCCccCC
Q 022302          269 LEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       269 p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      |..+.  ++|++|++++|++++. |.
T Consensus       269 p~~~~--~~L~~L~Ls~N~l~~~-p~  291 (312)
T 1wwl_A          269 PKGLP--AKLSVLDLSYNRLDRN-PS  291 (312)
T ss_dssp             CSSCC--SEEEEEECCSSCCCSC-CC
T ss_pred             hhhcc--CCceEEECCCCCCCCC-hh
Confidence            66665  6777777777777654 54

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.4e-21  Score=163.50  Aligned_cols=183  Identities=17%  Similarity=0.206  Sum_probs=151.9

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCC-CCCcchhhhHHhhcCCCCCCEEECCC-CCCCc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW-FTGIYENRAYDSFGSLKQLKMLNLGD-NFFND  168 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~  168 (299)
                      ..++.+++++ .+.+           ++...+.++++|++|++++|. ++...+.    .|.++++|++|++++ |.+++
T Consensus        31 ~~l~~L~l~~n~l~~-----------i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~   95 (239)
T 2xwt_C           31 PSTQTLKLIETHLRT-----------IPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTY   95 (239)
T ss_dssp             TTCCEEEEESCCCSE-----------ECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCE
T ss_pred             CcccEEEEeCCcceE-----------ECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeE
Confidence            3567777777 5444           445578899999999999997 8887776    789999999999998 99998


Q ss_pred             cchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC---EEECCCCcCCCCCccchhhhccCCCCc-EEECCCCCCCC
Q 022302          169 SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ---VLDLSGNFNITSGSLTRLGLANLTNLK-KLDLGSCGITT  244 (299)
Q Consensus       169 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~---~L~Ls~n~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~  244 (299)
                      ..+..+..+++|++|++++|++++ +|.  +..+++|+   +|++++|  .....++...+..+++|+ +|++++|+++.
T Consensus        96 i~~~~f~~l~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N--~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C           96 IDPDALKELPLLKFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDN--PYMTSIPVNAFQGLCNETLTLKLYNNGFTS  170 (239)
T ss_dssp             ECTTSEECCTTCCEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESC--TTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred             cCHHHhCCCCCCCEEeCCCCCCcc-ccc--cccccccccccEEECCCC--cchhhcCcccccchhcceeEEEcCCCCCcc
Confidence            777789999999999999999986 664  88888888   9999998  444456646788999999 99999999986


Q ss_pred             ccc-ccCCCCCCEEeCCCCc-cCccCcccccCC-CCCCEEecCCCCCCCccCCC
Q 022302          245 IQG-LAKLKNLEALDLSYNY-YIHSSLEGLANL-TNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       245 ~~~-l~~l~~L~~L~L~~N~-l~~~~p~~l~~l-~~L~~L~l~~N~l~g~ip~~  295 (299)
                      .+. ....++|++|++++|+ +++..+..+..+ ++|++|++++|++++ +|+.
T Consensus       171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~  223 (239)
T 2xwt_C          171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK  223 (239)
T ss_dssp             ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT
T ss_pred             cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh
Confidence            653 2333899999999995 997667888999 999999999999985 5553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=1.5e-21  Score=171.26  Aligned_cols=157  Identities=23%  Similarity=0.203  Sum_probs=133.7

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc--chHhh--ccCCCCcEEeCCCCcCCC--cchhhhh
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS--ILPYL--NTLTSLTTLILSDNSIEG--SRTKQGL  199 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~l--~~l~~L~~L~L~~n~l~~--~~p~~~~  199 (299)
                      ++|++|++++|.+.+..+.    .+..+++|++|++++|++.+.  .|..+  ..+++|++|++++|++++  .++...+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  224 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCE----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA  224 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTT----TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred             CCCcEEEeeCCCCccchHH----HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence            8999999999999999877    899999999999999998875  34455  889999999999999984  2343456


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCC
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ  279 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  279 (299)
                      ..+++|++|++++|  .+.+..+...+..+++|++|++++|+++..+.... ++|++|++++|++++. |. +..+++|+
T Consensus       225 ~~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~  299 (312)
T 1wwl_A          225 AARVQLQGLDLSHN--SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRN-PS-PDELPQVG  299 (312)
T ss_dssp             HTTCCCSEEECTTS--CCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSC-CC-TTTSCEEE
T ss_pred             hcCCCCCEEECCCC--cCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCC-hh-HhhCCCCC
Confidence            78899999999999  77776543456778999999999999997764222 8999999999999965 66 99999999


Q ss_pred             EEecCCCCCCCc
Q 022302          280 VLDLSDNQNLTT  291 (299)
Q Consensus       280 ~L~l~~N~l~g~  291 (299)
                      +|++++|++++.
T Consensus       300 ~L~L~~N~l~~~  311 (312)
T 1wwl_A          300 NLSLKGNPFLDS  311 (312)
T ss_dssp             EEECTTCTTTCC
T ss_pred             EEeccCCCCCCC
Confidence            999999999863

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=5.9e-21  Score=181.83  Aligned_cols=169  Identities=22%  Similarity=0.204  Sum_probs=107.5

Q ss_pred             cccCCCCCccEEeCCCCCCCCcc--hhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIY--ENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ  197 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  197 (299)
                      ..+.++++|++|++++|.+.+..  +.    .+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..
T Consensus       344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          344 GCLENLENLRELDLSHDDIETSDCCNL----QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             STTTTCTTCCEEECCSSCCCEEEESTT----TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred             hhhhccCcCCEEECCCCccccccCcch----hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence            34666777777777777776654  43    5667777777777777776666666777777777777777766554443


Q ss_pred             hhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc-----ccccCCCCCCEEeCCCCccCccCcccc
Q 022302          198 GLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI-----QGLAKLKNLEALDLSYNYYIHSSLEGL  272 (299)
Q Consensus       198 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~l~~l~~L~~L~L~~N~l~~~~p~~l  272 (299)
                      .+..+++|++|++++|  .+.+..+ ..+..+++|++|++++|.+++.     ..+..+++|+.|++++|.+++..|..+
T Consensus       420 ~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  496 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHS--LLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF  496 (606)
T ss_dssp             TTTTCTTCCEEECTTC--CCBTTCT-TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred             hhhCcccCCEEECCCC--ccCCcCH-HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence            4666667777777776  5554444 4556666666666666666542     125555666666666666665556666


Q ss_pred             cCCCCCCEEecCCCCCCCccCCC
Q 022302          273 ANLTNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       273 ~~l~~L~~L~l~~N~l~g~ip~~  295 (299)
                      ..+++|++|++++|++++.+|+.
T Consensus       497 ~~l~~L~~L~Ls~N~l~~~~~~~  519 (606)
T 3t6q_A          497 TSLKMMNHVDLSHNRLTSSSIEA  519 (606)
T ss_dssp             TTCTTCCEEECCSSCCCGGGGGG
T ss_pred             ccccCCCEEECCCCccCcCChhH
Confidence            66666666666666666555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.85  E-value=6.8e-21  Score=188.24  Aligned_cols=197  Identities=24%  Similarity=0.236  Sum_probs=167.4

Q ss_pred             CCCceEecCCCCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcc-hhhhHHhhcCCCCCCE
Q 022302           81 DWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIY-ENRAYDSFGSLKQLKM  158 (299)
Q Consensus        81 ~w~gv~C~~~~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~l~~L~~  158 (299)
                      .|..|.+  ...+++.|+++. .+.+           +.+..|.++++|++|++++|...+.+ |.    .|.++++|++
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~~-----------i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~L~~   77 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIRT-----------VTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPNLRI   77 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCCE-----------ECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTTCCE
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCCc-----------cChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCCCCE
Confidence            6778777  457899999988 5554           44667899999999999999776665 55    7999999999


Q ss_pred             EECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh-hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEEC
Q 022302          159 LNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL  237 (299)
Q Consensus       159 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~L  237 (299)
                      |+|++|.+.+..|..++.+++|++|+|++|.+++.++. ..+..+++|++|++++|  .+.+..+...++.+++|++|++
T Consensus        78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N--~l~~~~~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A           78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN--QIRSLYLHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC--CCCCCCCCGGGGTCSSCCEEEE
T ss_pred             EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC--cccccccchhHhhCCCCCEEEC
Confidence            99999999998899999999999999999999976654 23899999999999999  7776655467899999999999


Q ss_pred             CCCCCCCcc--cccCC--CCCCEEeCCCCccCccCcccccCCCC------CCEEecCCCCCCCccCCCc
Q 022302          238 GSCGITTIQ--GLAKL--KNLEALDLSYNYYIHSSLEGLANLTN------LQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       238 s~n~l~~~~--~l~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~------L~~L~l~~N~l~g~ip~~~  296 (299)
                      ++|.+++..  .+..+  ++|+.|++++|.+++..|..++.+++      |++|++++|.+++.+|..+
T Consensus       156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  224 (844)
T 3j0a_A          156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF  224 (844)
T ss_dssp             ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred             CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence            999998764  35555  89999999999999988888877766      9999999999988887654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=3.9e-20  Score=176.17  Aligned_cols=181  Identities=27%  Similarity=0.253  Sum_probs=97.4

Q ss_pred             cEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch
Q 022302           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (299)
Q Consensus        93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  171 (299)
                      .++.+++++ .+.+           +.+..++.+++|++|++++|.++.. |.    .+..+++|++|++++|.+.+..|
T Consensus       255 ~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~l-p~----~l~~l~~L~~L~l~~n~l~~~~~  318 (606)
T 3t6q_A          255 SVESINLQKHYFFN-----------ISSNTFHCFSGLQELDLTATHLSEL-PS----GLVGLSTLKKLVLSANKFENLCQ  318 (606)
T ss_dssp             EEEEEECTTCCCSS-----------CCTTTTTTCTTCSEEECTTSCCSCC-CS----SCCSCTTCCEEECTTCCCSBGGG
T ss_pred             ceeEEEeecCccCc-----------cCHHHhccccCCCEEeccCCccCCC-Ch----hhcccccCCEEECccCCcCcCch
Confidence            566777766 4433           2233455556666666666655532 22    45555566666666665555545


Q ss_pred             HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcC------------------------CCCCccchhhhc
Q 022302          172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN------------------------ITSGSLTRLGLA  227 (299)
Q Consensus       172 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~------------------------~~~~~~~~~~~~  227 (299)
                      ..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+                        .+.+..+ ..+.
T Consensus       319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~  397 (606)
T 3t6q_A          319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFK  397 (606)
T ss_dssp             GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-TTTT
T ss_pred             hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH-HHhc
Confidence            55555555555555555555444443344555555555555511                        3333333 3444


Q ss_pred             cCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          228 NLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       228 ~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      .+++|++|++++|.+++..   .+..+++|+.|++++|.+++..|..+..+++|++|++++|++.+
T Consensus       398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence            5555555555555554332   14555666666666666665556666666666666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=6.1e-21  Score=177.41  Aligned_cols=157  Identities=21%  Similarity=0.211  Sum_probs=92.2

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  201 (299)
                      +..+++|++|++++|.+++..+         .++|++|++++|.+++..+   ..+++|++|++++|.+++..|. .+..
T Consensus        76 l~~l~~L~~L~Ls~N~l~~l~~---------~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~-~~~~  142 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQELLV---------GPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDL-DEGC  142 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEEEEE---------CTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGB-CGGG
T ss_pred             cccCCCCCEEEecCCcCCCCCC---------CCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCch-hhcC
Confidence            4444455555555544443321         1333444444444433222   1345667777777777654343 5666


Q ss_pred             CCCCCEEECCCCcCCCCCccchhhhc-cCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCE
Q 022302          202 LRYLQVLDLSGNFNITSGSLTRLGLA-NLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV  280 (299)
Q Consensus       202 l~~L~~L~Ls~n~~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  280 (299)
                      +++|++|++++|  .+.+..| ..+. .+++|++|++++|.+++.+....+++|+.|+|++|.+++. |+.+..+++|+.
T Consensus       143 l~~L~~L~Ls~N--~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~  218 (487)
T 3oja_A          143 RSRVQYLDLKLN--EIDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTW  218 (487)
T ss_dssp             GSSEEEEECTTS--CCCEEEG-GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSE
T ss_pred             CCCCCEEECCCC--CCCCcCh-HHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCC-CHhHcCCCCccE
Confidence            777777777777  6666555 3333 6677777777777777666666677777777777777753 334667777777


Q ss_pred             EecCCCCCCCccCCCc
Q 022302          281 LDLSDNQNLTTLGKPL  296 (299)
Q Consensus       281 L~l~~N~l~g~ip~~~  296 (299)
                      |++++|++++ +|..+
T Consensus       219 L~Ls~N~l~~-lp~~l  233 (487)
T 3oja_A          219 ISLRNNKLVL-IEKAL  233 (487)
T ss_dssp             EECTTSCCCE-ECTTC
T ss_pred             EEecCCcCcc-cchhh
Confidence            7777777764 55543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=6.3e-20  Score=155.94  Aligned_cols=160  Identities=24%  Similarity=0.244  Sum_probs=138.8

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ...++++++++.++...+     .+.  ++++.|++++|.+++..+..+..+++|++|++++|++++. ++..+..+++|
T Consensus        14 ~~~~~l~~~~~~l~~~p~-----~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L   85 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPS-----GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTEL   85 (251)
T ss_dssp             GGGTEEECTTCCCSSCCS-----CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTC
T ss_pred             CCCeEEecCCCCccccCC-----CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcC
Confidence            356889999999987654     333  6899999999999998888999999999999999999974 44478999999


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL  283 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  283 (299)
                      ++|++++|  .+.+..+ ..+..+++|++|++++|++++.+.  +..+++|++|+|++|.+++..+..+..+++|++|++
T Consensus        86 ~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  162 (251)
T 3m19_A           86 GTLGLANN--QLASLPL-GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL  162 (251)
T ss_dssp             CEEECTTS--CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCC--cccccCh-hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence            99999999  6665544 678899999999999999998875  788999999999999999777778999999999999


Q ss_pred             CCCCCCCccCCCc
Q 022302          284 SDNQNLTTLGKPL  296 (299)
Q Consensus       284 ~~N~l~g~ip~~~  296 (299)
                      ++|++.+..|..+
T Consensus       163 ~~N~l~~~~~~~~  175 (251)
T 3m19_A          163 STNQLQSVPHGAF  175 (251)
T ss_dssp             CSSCCSCCCTTTT
T ss_pred             CCCcCCccCHHHH
Confidence            9999997665444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=3.4e-21  Score=189.43  Aligned_cols=165  Identities=17%  Similarity=0.155  Sum_probs=146.5

Q ss_pred             ccccC--CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCc-cchHhhccCC-------CCcEEeCCC
Q 022302          119 MSLFH--PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FND-SILPYLNTLT-------SLTTLILSD  187 (299)
Q Consensus       119 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~L~~  187 (299)
                      |..++  ++++|++|++++|.+.+.+|.    .+.++++|++|++++|+ +++ .+|..++.++       +|++|++++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~----~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCG----GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChH----HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence            44555  999999999999999999997    89999999999999998 998 8898887665       999999999


Q ss_pred             CcCCCcchh-hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cccCCCC-CCEEeCCCCcc
Q 022302          188 NSIEGSRTK-QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKN-LEALDLSYNYY  264 (299)
Q Consensus       188 n~l~~~~p~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~-L~~L~L~~N~l  264 (299)
                      |+++ .+|. ..+..+++|++|++++|  .+. .+|  .+..+++|+.|++++|+++..+ .+..+++ |+.|++++|.+
T Consensus       558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N--~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          558 NNLE-EFPASASLQKMVKLGLLDCVHN--KVR-HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             SCCC-BCCCHHHHTTCTTCCEEECTTS--CCC-BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred             CcCC-ccCChhhhhcCCCCCEEECCCC--Ccc-cch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence            9999 6775 36999999999999999  666 666  7899999999999999999766 4888888 99999999999


Q ss_pred             CccCcccccCCCC--CCEEecCCCCCCCccCC
Q 022302          265 IHSSLEGLANLTN--LQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       265 ~~~~p~~l~~l~~--L~~L~l~~N~l~g~ip~  294 (299)
                      + .+|..+..++.  |+.|++++|++.|.+|.
T Consensus       632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             C-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence            9 88988877654  99999999999998774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=2e-21  Score=173.27  Aligned_cols=183  Identities=22%  Similarity=0.283  Sum_probs=117.4

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.+++++ .+.+           +.+..+.++++|++|++++|.+++..+.    .+..+++|++|++++|++++..
T Consensus        76 ~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~  140 (353)
T 2z80_A           76 VNLQALVLTSNGINT-----------IEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKTLG  140 (353)
T ss_dssp             TTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSSSC
T ss_pred             CCCCEEECCCCccCc-----------cCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcccC
Confidence            4677788877 4444           3345577788888888888888876654    5777888888888888877533


Q ss_pred             h-HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccC--------------------
Q 022302          171 L-PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANL--------------------  229 (299)
Q Consensus       171 p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l--------------------  229 (299)
                      + ..+..+++|++|++++|...+.+++..+..+++|++|++++|  .+.+..+ ..+..+                    
T Consensus       141 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~  217 (353)
T 2z80_A          141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS--DLQSYEP-KSLKSIQNVSHLILHMKQHILLLEIF  217 (353)
T ss_dssp             SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET--TCCEECT-TTTTTCSEEEEEEEECSCSTTHHHHH
T ss_pred             chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC--CcCccCH-HHHhccccCCeecCCCCccccchhhh
Confidence            3 366777788888887774333444446667777777777777  5544434 444444                    


Q ss_pred             ----CCCcEEECCCCCCCCcc---------------------------------cccCCCCCCEEeCCCCccCccCccc-
Q 022302          230 ----TNLKKLDLGSCGITTIQ---------------------------------GLAKLKNLEALDLSYNYYIHSSLEG-  271 (299)
Q Consensus       230 ----~~L~~L~Ls~n~l~~~~---------------------------------~l~~l~~L~~L~L~~N~l~~~~p~~-  271 (299)
                          ++|++|++++|.+++..                                 .+..+++|++|++++|+++ .+|+. 
T Consensus       218 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~  296 (353)
T 2z80_A          218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI  296 (353)
T ss_dssp             HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence                44555555555544321                                 1334567777777777777 44444 


Q ss_pred             ccCCCCCCEEecCCCCCCCccC
Q 022302          272 LANLTNLQVLDLSDNQNLTTLG  293 (299)
Q Consensus       272 l~~l~~L~~L~l~~N~l~g~ip  293 (299)
                      +..+++|++|++++|++.+..|
T Consensus       297 ~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          297 FDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCCCCCEEEeeCCCccCcCC
Confidence            4677777777777777766554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=1.5e-21  Score=187.30  Aligned_cols=166  Identities=14%  Similarity=0.202  Sum_probs=121.1

Q ss_pred             ccccCCCCCccEEeCCCCCCCCc-----------------chhhhHHhhc--CCCCCCEEECCCCCCCccchHhhccCCC
Q 022302          119 MSLFHPFEELQRLDLPGNWFTGI-----------------YENRAYDSFG--SLKQLKMLNLGDNFFNDSILPYLNTLTS  179 (299)
Q Consensus       119 ~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  179 (299)
                      +..++++++|++|++++|.+++.                 +|.    .++  ++++|++|++++|.+.+.+|..++++++
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  274 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE  274 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence            45688889999999999998884                 565    777  8899999999999888888888888999


Q ss_pred             CcEEeCCCCc-CCC-cchhhhhcCC------CCCCEEECCCCcCCCCCccchh--hhccCCCCcEEECCCCCCC-Ccccc
Q 022302          180 LTTLILSDNS-IEG-SRTKQGLANL------RYLQVLDLSGNFNITSGSLTRL--GLANLTNLKKLDLGSCGIT-TIQGL  248 (299)
Q Consensus       180 L~~L~L~~n~-l~~-~~p~~~~~~l------~~L~~L~Ls~n~~~~~~~~~~~--~~~~l~~L~~L~Ls~n~l~-~~~~l  248 (299)
                      |++|++++|+ +++ .+|. .++.+      ++|++|++++|  .+. .+| .  .+..+++|++|++++|+++ ..+.+
T Consensus       275 L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n--~l~-~ip-~~~~l~~l~~L~~L~L~~N~l~g~ip~~  349 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYN--NLK-TFP-VETSLQKMKKLGMLECLYNQLEGKLPAF  349 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSS--CCS-SCC-CHHHHTTCTTCCEEECCSCCCEEECCCC
T ss_pred             CCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCC--cCC-ccC-chhhhccCCCCCEEeCcCCcCccchhhh
Confidence            9999999988 877 6775 56655      88888888888  665 566 4  6788888888888888877 33344


Q ss_pred             cCCCCCCEEeCCCCccCccCcccccCCCC-CCEEecCCCCCCCccCCC
Q 022302          249 AKLKNLEALDLSYNYYIHSSLEGLANLTN-LQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~g~ip~~  295 (299)
                      ..+++|+.|++++|.++ .+|+.+..+++ |++|++++|+++ .+|+.
T Consensus       350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~  395 (636)
T 4eco_A          350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI  395 (636)
T ss_dssp             EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred             CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence            55555555555555555 45555555555 555555555554 45543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=5.7e-21  Score=167.45  Aligned_cols=163  Identities=21%  Similarity=0.116  Sum_probs=118.1

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCc--chh-hhh
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS--RTK-QGL  199 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~-~~~  199 (299)
                      ..+++|++|++++|.+.+..+......+..+++|++|++++|.+.+..+..++.+++|++|++++|++.+.  ++. ..+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            77888888888888888755422212455788888888888888877777888888888888888887642  221 123


Q ss_pred             cCCCCCCEEECCCCcCCCCC--ccchhhhccCCCCcEEECCCCCCCCcc--cccCC---CCCCEEeCCCCccCccCcccc
Q 022302          200 ANLRYLQVLDLSGNFNITSG--SLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKL---KNLEALDLSYNYYIHSSLEGL  272 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l---~~L~~L~L~~N~l~~~~p~~l  272 (299)
                      ..+++|++|++++|  .+..  ..+...+..+++|++|++++|++++..  .+..+   ++|++|++++|+++ .+|..+
T Consensus       194 ~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~  270 (310)
T 4glp_A          194 HKFPAIQNLALRNT--GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL  270 (310)
T ss_dssp             TSSCCCCSCBCCSS--CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred             hcCCCCCEEECCCC--CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence            67788888888888  5432  222113567788888888888888762  24444   68888888888888 667766


Q ss_pred             cCCCCCCEEecCCCCCCC
Q 022302          273 ANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       273 ~~l~~L~~L~l~~N~l~g  290 (299)
                      .  ++|++|++++|++++
T Consensus       271 ~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          271 P--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             C--SCCSCEECCSCCCCS
T ss_pred             c--CCCCEEECCCCcCCC
Confidence            4  788888888888886

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=3.1e-20  Score=179.26  Aligned_cols=164  Identities=26%  Similarity=0.234  Sum_probs=136.1

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.+++++ .+.+           +.+..|.++++|++|++++|.+.+..|.    .+.++++|++|++++|.+++..
T Consensus        25 ~~l~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~   89 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR-----------LPAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLS   89 (680)
T ss_dssp             TTCSEEECCSSCCCC-----------CCGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCC
T ss_pred             CCCcEEECCCCCCCC-----------cCHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccC
Confidence            4677888877 5544           3455688899999999999999998887    7889999999999999998766


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc---
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG---  247 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---  247 (299)
                      +..|+.+++|++|++++|++++ +++..++.+++|++|++++|  .+.+..+ ..+..+++|++|++++|.+++.++   
T Consensus        90 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~  165 (680)
T 1ziw_A           90 DKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHN--GLSSTKL-GTQVQLENLQELLLSNNKIQALKSEEL  165 (680)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSS--CCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred             hhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCC--cccccCc-hhhcccccCCEEEccCCcccccCHHHh
Confidence            6679999999999999999985 55447899999999999999  7777666 678889999999999999988753   


Q ss_pred             -ccCCCCCCEEeCCCCccCccCcccccC
Q 022302          248 -LAKLKNLEALDLSYNYYIHSSLEGLAN  274 (299)
Q Consensus       248 -l~~l~~L~~L~L~~N~l~~~~p~~l~~  274 (299)
                       ...+++|++|++++|.+++..|..+..
T Consensus       166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~  193 (680)
T 1ziw_A          166 DIFANSSLKKLELSSNQIKEFSPGCFHA  193 (680)
T ss_dssp             GGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred             hccccccccEEECCCCcccccChhhhhh
Confidence             345688999999999998877766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.84  E-value=4.7e-20  Score=172.55  Aligned_cols=161  Identities=27%  Similarity=0.309  Sum_probs=142.0

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCc--cchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND--SILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  200 (299)
                      ..+++|++|++++|.+++..|.    .+..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|...+.
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT----TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             hhCCcccEEEeECCccChhhhh----hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence            6889999999999999998776    88999999999999999987  56778999999999999999999778875688


Q ss_pred             CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCccc-ccCCCCC
Q 022302          201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEG-LANLTNL  278 (299)
Q Consensus       201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L  278 (299)
                      .+++|++|++++|  .+.+..+ ..+.  ++|++|++++|+++..+. +..+++|++|++++|+++ .+|.. +..+++|
T Consensus       397 ~l~~L~~L~Ls~N--~l~~~~~-~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L  470 (520)
T 2z7x_B          397 WTKSLLSLNMSSN--ILTDTIF-RCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL  470 (520)
T ss_dssp             CCTTCCEEECCSS--CCCGGGG-GSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             cCccCCEEECcCC--CCCcchh-hhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence            9999999999999  7777666 3332  799999999999998764 779999999999999999 56665 8999999


Q ss_pred             CEEecCCCCCCCccC
Q 022302          279 QVLDLSDNQNLTTLG  293 (299)
Q Consensus       279 ~~L~l~~N~l~g~ip  293 (299)
                      ++|++++|++.+..+
T Consensus       471 ~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          471 QKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CEEECCSSCBCCCHH
T ss_pred             cEEECcCCCCcccCC
Confidence            999999999987643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=5.3e-20  Score=175.26  Aligned_cols=166  Identities=22%  Similarity=0.205  Sum_probs=115.2

Q ss_pred             cccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcch
Q 022302          116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRT  195 (299)
Q Consensus       116 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  195 (299)
                      .+++..|+++++|++|++++|.+++..+.    .|..+++|++|++++|.+++..|..++.+++|++|++++|.+++. +
T Consensus       113 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~  187 (597)
T 3oja_B          113 YLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D  187 (597)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C
T ss_pred             CCCHHHHcCCCCCCEEEeeCCCCCCCCHH----HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C
Confidence            34556788999999999999999987765    678899999999999999988888899999999999999887742 2


Q ss_pred             hh-----------------------------------------------------------hhcCCCCCCEEECCCCcCC
Q 022302          196 KQ-----------------------------------------------------------GLANLRYLQVLDLSGNFNI  216 (299)
Q Consensus       196 ~~-----------------------------------------------------------~~~~l~~L~~L~Ls~n~~~  216 (299)
                      ..                                                           .+..+++|++|++++|  .
T Consensus       188 ~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N--~  265 (597)
T 3oja_B          188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN--E  265 (597)
T ss_dssp             GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS--C
T ss_pred             hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC--c
Confidence            11                                                           2344455555555555  4


Q ss_pred             CCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          217 TSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       217 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      +.+..| ..+..+++|+.|++++|.+++.+. +..+++|+.|+|++|.++ .+|..+..+++|++|++++|++.+
T Consensus       266 l~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          266 LEKIMY-HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             CCEEES-GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             cCCCCH-HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence            544444 455666666666666666665543 344566666666666666 455556666666666666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=9.4e-20  Score=164.54  Aligned_cols=165  Identities=22%  Similarity=0.206  Sum_probs=102.7

Q ss_pred             ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh
Q 022302          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (299)
Q Consensus       117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  196 (299)
                      +.+..++++++|++|++++|.++...+.    .+..+++|++|++++|.+++..+..+..+++|++|++++|++++. +.
T Consensus       108 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~  182 (390)
T 3o6n_A          108 LPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DL  182 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CG
T ss_pred             CCHHHhcCCCCCCEEECCCCccCcCCHH----HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-cc
Confidence            3445677788888888888888866554    467788888888888888776677777788888888887776632 11


Q ss_pred             h-----------------------------------------------------------hhcCCCCCCEEECCCCcCCC
Q 022302          197 Q-----------------------------------------------------------GLANLRYLQVLDLSGNFNIT  217 (299)
Q Consensus       197 ~-----------------------------------------------------------~~~~l~~L~~L~Ls~n~~~~  217 (299)
                      .                                                           .+..+++|++|++++|  .+
T Consensus       183 ~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n--~l  260 (390)
T 3o6n_A          183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN--EL  260 (390)
T ss_dssp             GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSS--CC
T ss_pred             ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCC--cC
Confidence            1                                                           2334445555555555  44


Q ss_pred             CCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          218 SGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       218 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      .+..+ ..+..+++|++|++++|++++.+. +..+++|++|++++|+++ .+|+.+..+++|++|++++|++.+
T Consensus       261 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~  332 (390)
T 3o6n_A          261 EKIMY-HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  332 (390)
T ss_dssp             CEEES-GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             CCcCh-hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence            44434 455555566666666665555433 344556666666666655 445555555666666666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=2.7e-20  Score=177.20  Aligned_cols=166  Identities=25%  Similarity=0.254  Sum_probs=121.5

Q ss_pred             cccCCCCCccEEeCCCCCCCCcch-hhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYE-NRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  198 (299)
                      ..+..+++|++|++++|.+.+..+ .    .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..++..
T Consensus       393 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  468 (606)
T 3vq2_A          393 ANFMGLEELQHLDFQHSTLKRVTEFS----AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV  468 (606)
T ss_dssp             CCCTTCTTCCEEECTTSEEESTTTTT----TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred             hhccCCCCCCeeECCCCccCCccChh----hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence            456677777777777777777655 3    56777788888888888777777777777888888888887776433336


Q ss_pred             hcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCC
Q 022302          199 LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLT  276 (299)
Q Consensus       199 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  276 (299)
                      +..+++|++|++++|  .+.+..| ..+..+++|++|++++|++++..  .+..+++|+.|++++|+++ .+|+.+..++
T Consensus       469 ~~~l~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~  544 (606)
T 3vq2_A          469 FANTTNLTFLDLSKC--QLEQISW-GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP  544 (606)
T ss_dssp             CTTCTTCCEEECTTS--CCCEECT-TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred             hccCCCCCEEECCCC--cCCccCh-hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence            777788888888887  6666555 66777788888888888877763  3777778888888888877 5666677776


Q ss_pred             -CCCEEecCCCCCCCccC
Q 022302          277 -NLQVLDLSDNQNLTTLG  293 (299)
Q Consensus       277 -~L~~L~l~~N~l~g~ip  293 (299)
                       +|++|++++|++.+..+
T Consensus       545 ~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          545 KSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TTCCEEECCSCCCCCSST
T ss_pred             ccCcEEEccCCCcccCCc
Confidence             48888888888776444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=9.2e-21  Score=180.49  Aligned_cols=166  Identities=25%  Similarity=0.204  Sum_probs=134.7

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch-HhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTTLILSDNSIEGSRTKQG  198 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~  198 (299)
                      ..+..+++|++|++++|.+.+.. .    .+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+..|. .
T Consensus       370 ~~~~~~~~L~~L~L~~n~l~~~~-~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~  443 (606)
T 3vq2_A          370 YSDLGTNSLRHLDLSFNGAIIMS-A----NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-I  443 (606)
T ss_dssp             HHHHCCSCCCEEECCSCSEEEEC-C----CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-T
T ss_pred             hhhccCCcccEeECCCCccccch-h----hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-h
Confidence            44566777777888777776644 3    67788888888888888877666 5778888888899888888865554 6


Q ss_pred             hcCCCCCCEEECCCCcCCCCCc-cchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCC
Q 022302          199 LANLRYLQVLDLSGNFNITSGS-LTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANL  275 (299)
Q Consensus       199 ~~~l~~L~~L~Ls~n~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l  275 (299)
                      +..+++|++|++++|  .+.+. .| ..+..+++|++|++++|++++.++  +..+++|++|++++|++++..|..+..+
T Consensus       444 ~~~l~~L~~L~l~~n--~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  520 (606)
T 3vq2_A          444 FLGLTSLNTLKMAGN--SFKDNTLS-NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL  520 (606)
T ss_dssp             TTTCTTCCEEECTTC--EEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred             hcCCCCCCEEECCCC--cCCCcchH-HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence            888899999999998  77664 45 678889999999999999887653  7888999999999999998889999999


Q ss_pred             CCCCEEecCCCCCCCccCCC
Q 022302          276 TNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       276 ~~L~~L~l~~N~l~g~ip~~  295 (299)
                      ++|++|++++|+++ .+|+.
T Consensus       521 ~~L~~L~l~~N~l~-~~p~~  539 (606)
T 3vq2_A          521 YSLSTLDCSFNRIE-TSKGI  539 (606)
T ss_dssp             TTCCEEECTTSCCC-CEESC
T ss_pred             CcCCEEECCCCcCc-ccCHh
Confidence            99999999999987 57765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.83  E-value=3.5e-20  Score=171.62  Aligned_cols=165  Identities=25%  Similarity=0.272  Sum_probs=94.1

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  201 (299)
                      +.++++|++|++++|.+.+..+.    .|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ++...+..
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~  198 (477)
T 2id5_A          124 FQDLYNLKSLEVGDNDLVYISHR----AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKR  198 (477)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTT----SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCS
T ss_pred             ccccccCCEEECCCCccceeChh----hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE-eChhhccc
Confidence            34444444444444444444333    44444445555555554444444444444555555555544443 22223444


Q ss_pred             CCCCCEEECCCCcCCCCC-----------------------ccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCE
Q 022302          202 LRYLQVLDLSGNFNITSG-----------------------SLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEA  256 (299)
Q Consensus       202 l~~L~~L~Ls~n~~~~~~-----------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~  256 (299)
                      +++|++|++++|  ...+                       .++...+..+++|++|++++|.+++.+.  +..+++|+.
T Consensus       199 l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (477)
T 2id5_A          199 LYRLKVLEISHW--PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE  276 (477)
T ss_dssp             CTTCCEEEEECC--TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred             CcccceeeCCCC--ccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence            444444444443  2221                       1222456667777777777777776543  677788888


Q ss_pred             EeCCCCccCccCcccccCCCCCCEEecCCCCCCCccC
Q 022302          257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG  293 (299)
Q Consensus       257 L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip  293 (299)
                      |++++|++++..|..+..+++|++|++++|++++..+
T Consensus       277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  313 (477)
T 2id5_A          277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE  313 (477)
T ss_dssp             EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred             EECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence            8888888887777888888888888888888876433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=2.1e-19  Score=157.34  Aligned_cols=168  Identities=30%  Similarity=0.396  Sum_probs=133.1

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.+++++ .+.+           +.+  +..+++|++|++++|.+.+. +     .+..+++|++|++++|.+++. 
T Consensus        63 ~~L~~L~L~~n~i~~-----------~~~--~~~l~~L~~L~L~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~~-  122 (308)
T 1h6u_A           63 NNLIGLELKDNQITD-----------LAP--LKNLTKITELELSGNPLKNV-S-----AIAGLQSIKTLDLTSTQITDV-  122 (308)
T ss_dssp             TTCCEEECCSSCCCC-----------CGG--GTTCCSCCEEECCSCCCSCC-G-----GGTTCTTCCEEECTTSCCCCC-
T ss_pred             CCCCEEEccCCcCCC-----------Chh--HccCCCCCEEEccCCcCCCc-h-----hhcCCCCCCEEECCCCCCCCc-
Confidence            4567777776 4443           112  77888899999999988875 2     578888999999999988764 


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK  250 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~  250 (299)
                      +. +..+++|++|++++|++++ ++.  +..+++|++|++++|  .+.+. +  .+..+++|+.|++++|++++.+++..
T Consensus       123 ~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n--~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~l~~  193 (308)
T 1h6u_A          123 TP-LAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGNA--QVSDL-T--PLANLSKLTTLKADDNKISDISPLAS  193 (308)
T ss_dssp             GG-GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSS--CCCCC-G--GGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             hh-hcCCCCCCEEECCCCccCc-Ccc--ccCCCCccEEEccCC--cCCCC-h--hhcCCCCCCEEECCCCccCcChhhcC
Confidence            33 7888999999999998885 443  788889999999998  66543 3  27788899999999999988888888


Q ss_pred             CCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      +++|++|++++|++++..+  +..+++|++|++++|++++
T Consensus       194 l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            8999999999999885443  7888999999999998865

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=1.3e-19  Score=152.03  Aligned_cols=135  Identities=27%  Similarity=0.258  Sum_probs=117.1

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.+++..+.    .+..+++|++|++++|+++...+..+..+++|++|+|++|++++ ++...+..+++|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L  114 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPG----VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHL  114 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCCEEEcCCCccCccCHH----HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhh
Confidence            7899999999999998887    88999999999999999987666778899999999999999985 555578899999


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCc
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSL  269 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p  269 (299)
                      ++|++++|  .+. .+| ..+..+++|++|++++|++++.+.  +..+++|+.|++++|.+....+
T Consensus       115 ~~L~Ls~N--~l~-~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          115 KELFMCCN--KLT-ELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CEEECCSS--CCC-SCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CeEeccCC--ccc-ccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99999999  555 566 677899999999999999988763  7788999999999999886544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=1.4e-19  Score=158.49  Aligned_cols=170  Identities=29%  Similarity=0.317  Sum_probs=144.0

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.+++.+ .+..             ...+..+++|++|++++|.+.+..      .+..+++|++|++++|.+++. 
T Consensus        41 ~~L~~L~l~~~~i~~-------------l~~~~~l~~L~~L~L~~n~i~~~~------~~~~l~~L~~L~L~~n~l~~~-  100 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-------------IEGVQYLNNLIGLELKDNQITDLA------PLKNLTKITELELSGNPLKNV-  100 (308)
T ss_dssp             HTCCEEECTTSCCCC-------------CTTGGGCTTCCEEECCSSCCCCCG------GGTTCCSCCEEECCSCCCSCC-
T ss_pred             CCcCEEEeeCCCccC-------------chhhhccCCCCEEEccCCcCCCCh------hHccCCCCCEEEccCCcCCCc-
Confidence            3577788877 4433             224778999999999999998864      378899999999999999864 


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK  250 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~  250 (299)
                      + .+..+++|++|++++|++++ ++  .+..+++|++|++++|  .+.+. +  .+..+++|++|++++|.+++.+.+..
T Consensus       101 ~-~~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n--~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~l~~  171 (308)
T 1h6u_A          101 S-AIAGLQSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLN--QITNI-S--PLAGLTNLQYLSIGNAQVSDLTPLAN  171 (308)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSS--CCCCC-G--GGGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred             h-hhcCCCCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCC--ccCcC-c--cccCCCCccEEEccCCcCCCChhhcC
Confidence            3 68899999999999999986 55  3899999999999999  66554 3  27899999999999999999888999


Q ss_pred             CCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCcc
Q 022302          251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL  292 (299)
Q Consensus       251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~i  292 (299)
                      +++|+.|++++|.+++..+  +..+++|++|++++|++.+..
T Consensus       172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred             CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence            9999999999999995443  889999999999999998654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=1e-19  Score=171.95  Aligned_cols=161  Identities=29%  Similarity=0.299  Sum_probs=138.6

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCc--cchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND--SILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  200 (299)
                      ..+++|++|++++|.+++..|.    .+..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|...+.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  425 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA  425 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT----TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred             cCCCCceEEECCCCccccchhh----hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence            6789999999999999998776    88999999999999999987  34567889999999999999999767776688


Q ss_pred             CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCccc-ccCCCCC
Q 022302          201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEG-LANLTNL  278 (299)
Q Consensus       201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L  278 (299)
                      .+++|++|++++|  .+.+..+ ..+.  ++|++|++++|+++..+. +..+++|++|++++|+++ .+|+. +..+++|
T Consensus       426 ~l~~L~~L~l~~n--~l~~~~~-~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L  499 (562)
T 3a79_B          426 WAESILVLNLSSN--MLTGSVF-RCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL  499 (562)
T ss_dssp             CCTTCCEEECCSS--CCCGGGG-SSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred             CcccCCEEECCCC--CCCcchh-hhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence            8999999999999  7766655 3322  699999999999998764 668999999999999999 56665 8999999


Q ss_pred             CEEecCCCCCCCccC
Q 022302          279 QVLDLSDNQNLTTLG  293 (299)
Q Consensus       279 ~~L~l~~N~l~g~ip  293 (299)
                      ++|++++|++.+..|
T Consensus       500 ~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          500 QYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCEECCSCCBCCCHH
T ss_pred             CEEEecCCCcCCCcc
Confidence            999999999987654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=1e-19  Score=152.68  Aligned_cols=153  Identities=21%  Similarity=0.201  Sum_probs=130.2

Q ss_pred             EEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEE
Q 022302          130 RLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLD  209 (299)
Q Consensus       130 ~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~  209 (299)
                      .++.+++.+..+..     .+  .++|++|++++|.+++..|..+..+++|++|+|++|++.. ++...|..+++|++|+
T Consensus        23 ~v~c~~~~l~~ip~-----~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           23 TVDCRSKRHASVPA-----GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             EEECTTSCCSSCCS-----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred             EeEccCCCcCccCC-----CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEE
Confidence            35555666655433     22  3789999999999999889999999999999999999974 6665789999999999


Q ss_pred             CCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCC
Q 022302          210 LSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN  288 (299)
Q Consensus       210 Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l  288 (299)
                      +++|  .+.+..+ ..+..+++|++|++++|+++..+ .+..+++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus        95 Ls~N--~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           95 LGTN--QLTVLPS-AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             CCCC--cCCccCh-hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            9999  7765544 67889999999999999999875 488999999999999999977777899999999999999999


Q ss_pred             CCccC
Q 022302          289 LTTLG  293 (299)
Q Consensus       289 ~g~ip  293 (299)
                      .+..+
T Consensus       172 ~c~c~  176 (229)
T 3e6j_A          172 DCECR  176 (229)
T ss_dssp             CTTBG
T ss_pred             cCCcc
Confidence            87654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=3e-20  Score=152.24  Aligned_cols=154  Identities=19%  Similarity=0.276  Sum_probs=130.4

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  202 (299)
                      ..+++|++|++++|.+... +     .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..+. .+..+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l-~-----~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDL-T-----GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIP-NLSGL  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCC-T-----TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSC-CCTTC
T ss_pred             hhcCCccEEeccCCCccCh-H-----HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccCh-hhcCC
Confidence            5577899999999999854 3     47889999999999997754  34788999999999999999875565 78999


Q ss_pred             CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCC-CCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302          203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG-ITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL  281 (299)
Q Consensus       203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  281 (299)
                      ++|++|++++|  .+.+..+ ..+..+++|++|++++|. ++..+.+..+++|+.|++++|.+++ ++ .+..+++|++|
T Consensus       112 ~~L~~L~Ls~n--~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L  186 (197)
T 4ezg_A          112 TSLTLLDISHS--AHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL  186 (197)
T ss_dssp             TTCCEEECCSS--BCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred             CCCCEEEecCC--ccCcHhH-HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence            99999999999  7776666 678999999999999998 8888889999999999999999995 44 68899999999


Q ss_pred             ecCCCCCCC
Q 022302          282 DLSDNQNLT  290 (299)
Q Consensus       282 ~l~~N~l~g  290 (299)
                      ++++|++.+
T Consensus       187 ~l~~N~i~~  195 (197)
T 4ezg_A          187 YAFSQTIGG  195 (197)
T ss_dssp             EECBC----
T ss_pred             EeeCcccCC
Confidence            999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=2.6e-20  Score=163.79  Aligned_cols=182  Identities=21%  Similarity=0.246  Sum_probs=125.0

Q ss_pred             cEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch
Q 022302           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (299)
Q Consensus        93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  171 (299)
                      +++.+++++ .+.+           ..+..+.++++|++|++++|.+++..+      +..+++|++|++++|.+++..+
T Consensus        35 ~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~l~~   97 (317)
T 3o53_A           35 NVKELDLSGNPLSQ-----------ISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELLV   97 (317)
T ss_dssp             GCSEEECTTSCCCC-----------CCHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEEEEE
T ss_pred             CCCEEECcCCccCc-----------CCHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCccccccC
Confidence            566777766 4443           334567888888888888888877543      6777788888887776654211


Q ss_pred             H-h---------------hccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEE
Q 022302          172 P-Y---------------LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL  235 (299)
Q Consensus       172 ~-~---------------l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L  235 (299)
                      . .               ...+++|++|++++|++++ +++..+..+++|++|++++|  .+.+..+......+++|++|
T Consensus        98 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L  174 (317)
T 3o53_A           98 GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHL  174 (317)
T ss_dssp             CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEE
T ss_pred             CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCC--CCCcccHHHHhhccCcCCEE
Confidence            0 0               1124556666666666664 33336777788888888888  66655552233467888888


Q ss_pred             ECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          236 DLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       236 ~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      ++++|.+++.+....+++|++|++++|.+++ +|+.+..+++|++|++++|++. .+|+.+
T Consensus       175 ~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~  233 (317)
T 3o53_A          175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKAL  233 (317)
T ss_dssp             ECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred             ECCCCcCcccccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHh
Confidence            8888888877666667888888888888884 4445778888888888888887 466654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=1.5e-19  Score=150.69  Aligned_cols=134  Identities=23%  Similarity=0.268  Sum_probs=88.7

Q ss_pred             CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (299)
Q Consensus       127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  206 (299)
                      .+++|++++|.+++..+..   .|..+++|++|++++|.+++..+..|..+++|++|++++|++++ +++..|..+++|+
T Consensus        33 ~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~  108 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLK  108 (220)
T ss_dssp             TCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCGGGGTTCSSCC
T ss_pred             CCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc-cCHhHhcCCcCCC
Confidence            4567777777777764420   35667777777777777776666667777777777777777765 3333567777777


Q ss_pred             EEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCcc
Q 022302          207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHS  267 (299)
Q Consensus       207 ~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~  267 (299)
                      +|++++|  .+.+..+ ..+..+++|++|++++|++++.+  .+..+++|+.|++++|.+.+.
T Consensus       109 ~L~Ls~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          109 TLMLRSN--RITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             EEECTTS--CCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             EEECCCC--cCCeECH-hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            7777777  5555544 55666677777777777766653  266666677777777666644

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=3e-20  Score=175.43  Aligned_cols=167  Identities=23%  Similarity=0.210  Sum_probs=133.0

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch-HhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTTLILSDNSIEGSRTKQG  198 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~  198 (299)
                      ..+..+++|++|++++|.+.+..+     .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+. .
T Consensus       367 ~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~  440 (570)
T 2z63_A          367 QSDFGTTSLKYLDLSFNGVITMSS-----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-I  440 (570)
T ss_dssp             HHHHTCSCCCEEECCSCSEEEEEE-----EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT-T
T ss_pred             ccccccCccCEEECCCCccccccc-----cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh-h
Confidence            345667777888888777776654     46778888888888888776555 4677888888888888888765554 6


Q ss_pred             hcCCCCCCEEECCCCcCCCC-CccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCC
Q 022302          199 LANLRYLQVLDLSGNFNITS-GSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANL  275 (299)
Q Consensus       199 ~~~l~~L~~L~Ls~n~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  275 (299)
                      +..+++|++|++++|  .+. +.+| ..+..+++|++|++++|++++..  .+..+++|++|++++|++++..|..+..+
T Consensus       441 ~~~l~~L~~L~l~~n--~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  517 (570)
T 2z63_A          441 FNGLSSLEVLKMAGN--SFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL  517 (570)
T ss_dssp             TTTCTTCCEEECTTC--EEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hhcCCcCcEEECcCC--cCccccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence            888889999999988  665 4566 67888899999999999988763  37888999999999999998777888899


Q ss_pred             CCCCEEecCCCCCCCccCCC
Q 022302          276 TNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       276 ~~L~~L~l~~N~l~g~ip~~  295 (299)
                      ++|++|++++|++++..|..
T Consensus       518 ~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          518 TSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             TTCCEEECCSSCBCCCTTTT
T ss_pred             cCCcEEEecCCcccCCCcch
Confidence            99999999999999888753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=1.9e-19  Score=159.17  Aligned_cols=155  Identities=20%  Similarity=0.240  Sum_probs=111.6

Q ss_pred             CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCc--cchHhhccC--------------------CCCcEEe
Q 022302          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND--SILPYLNTL--------------------TSLTTLI  184 (299)
Q Consensus       127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l--------------------~~L~~L~  184 (299)
                      +|++|++++|.+.+..+.    .+..+++|++|++++|.++.  ..+..+..+                    ++|++|+
T Consensus       124 ~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~  199 (332)
T 2ft3_A          124 SLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH  199 (332)
T ss_dssp             TCCEEECCSSCCCCCCSG----GGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCB
T ss_pred             cCCEEECCCCccCccCHh----HhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEE
Confidence            444444444444444433    46667777777777776642  333333332                    3455555


Q ss_pred             CCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCc
Q 022302          185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNY  263 (299)
Q Consensus       185 L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~  263 (299)
                      +++|++++. ++..+..+++|++|++++|  .+.+..+ ..+..+++|++|++++|+++..+. +..+++|+.|++++|+
T Consensus       200 l~~n~i~~~-~~~~l~~l~~L~~L~L~~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          200 LDHNKIQAI-ELEDLLRYSKLYRLGLGHN--QIRMIEN-GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CCSSCCCCC-CTTSSTTCTTCSCCBCCSS--CCCCCCT-TGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred             CCCCcCCcc-CHHHhcCCCCCCEEECCCC--cCCcCCh-hHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence            555555543 3336888999999999999  7776555 678999999999999999997764 8899999999999999


Q ss_pred             cCccCcccccC------CCCCCEEecCCCCCC
Q 022302          264 YIHSSLEGLAN------LTNLQVLDLSDNQNL  289 (299)
Q Consensus       264 l~~~~p~~l~~------l~~L~~L~l~~N~l~  289 (299)
                      +++..+..+..      .++|+.|++++|++.
T Consensus       276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CCccChhHccccccccccccccceEeecCccc
Confidence            99776666654      467999999999987

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=4.9e-19  Score=146.08  Aligned_cols=155  Identities=26%  Similarity=0.213  Sum_probs=132.1

Q ss_pred             cEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEE
Q 022302          129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL  208 (299)
Q Consensus       129 ~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L  208 (299)
                      +.++.+++.++....       .-.++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++|++|
T Consensus        10 ~~v~c~~~~l~~~p~-------~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L   81 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT-------GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYL   81 (208)
T ss_dssp             TEEECCSSCCSSCCS-------CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             CEEEecCCCccCCCC-------CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEE
Confidence            456667777766533       235689999999999998777778999999999999999985 565578999999999


Q ss_pred             ECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCC
Q 022302          209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN  286 (299)
Q Consensus       209 ~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N  286 (299)
                      ++++|  .+.+..+ ..+..+++|++|++++|++++.+.  +..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        82 ~Ls~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           82 NLSTN--QLQSLPN-GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             ECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             ECCCC--cCCccCH-hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            99999  6665444 668899999999999999998765  788999999999999999777777899999999999999


Q ss_pred             CCCCccCC
Q 022302          287 QNLTTLGK  294 (299)
Q Consensus       287 ~l~g~ip~  294 (299)
                      ++.+..|.
T Consensus       159 ~~~~~~~~  166 (208)
T 2o6s_A          159 PWDCTCPG  166 (208)
T ss_dssp             CBCCCTTT
T ss_pred             CeecCCCC
Confidence            99988875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=4.5e-19  Score=156.50  Aligned_cols=181  Identities=26%  Similarity=0.336  Sum_probs=118.5

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCC---------------------CcchhhhHHh
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFT---------------------GIYENRAYDS  149 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---------------------~~~~~~~~~~  149 (299)
                      .+++.+++++ .+.+           +.+..++++++|++|++++|.++                     +..+.    .
T Consensus        76 ~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~----~  140 (330)
T 1xku_A           76 KNLHTLILINNKISK-----------ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS----V  140 (330)
T ss_dssp             TTCCEEECCSSCCCC-----------BCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHH----H
T ss_pred             CCCCEEECCCCcCCe-----------eCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHh----H
Confidence            4577777776 4443           22334555555555555555544                     33332    4


Q ss_pred             hcCCCCCCEEECCCCCCCc--cchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhc
Q 022302          150 FGSLKQLKMLNLGDNFFND--SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLA  227 (299)
Q Consensus       150 l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~  227 (299)
                      +..+++|++|++++|.+..  ..+..+..+++|++|++++|.++. +|. .+  .++|++|++++|  .+.+..+ ..+.
T Consensus       141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~-~~--~~~L~~L~l~~n--~l~~~~~-~~~~  213 (330)
T 1xku_A          141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ-GL--PPSLTELHLDGN--KITKVDA-ASLK  213 (330)
T ss_dssp             HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCS-SC--CTTCSEEECTTS--CCCEECT-GGGT
T ss_pred             hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCc-cc--cccCCEEECCCC--cCCccCH-HHhc
Confidence            5555666666666665532  344455556666666666665553 333 11  156667777777  5555444 6788


Q ss_pred             cCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302          228 NLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       228 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~  295 (299)
                      .+++|++|++++|.+++.+  .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++.-+..
T Consensus       214 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~  282 (330)
T 1xku_A          214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND  282 (330)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence            8899999999999988765  3778889999999999988 78888888999999999999987644433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=3.2e-19  Score=154.96  Aligned_cols=168  Identities=33%  Similarity=0.377  Sum_probs=143.3

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.+++++ .+..             ...+..+++|++|++++|.+++..+      +..+++|++|++++|.+++ +
T Consensus        46 ~~L~~L~l~~~~i~~-------------~~~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~-~  105 (291)
T 1h6t_A           46 NSIDQIIANNSDIKS-------------VQGIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-L  105 (291)
T ss_dssp             HTCCEEECTTSCCCC-------------CTTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-G
T ss_pred             CcccEEEccCCCccc-------------ChhHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC-C
Confidence            3577788877 4443             2347788999999999999998643      7889999999999999986 3


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK  250 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~  250 (299)
                       +.+..+++|++|++++|++++ ++  .+..+++|++|++++|  .+.+.   ..+..+++|++|++++|++++.+++..
T Consensus       106 -~~l~~l~~L~~L~L~~n~i~~-~~--~l~~l~~L~~L~l~~n--~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~l~~  176 (291)
T 1h6t_A          106 -SSLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNN--KITDI---TVLSRLTKLDTLSLEDNQISDIVPLAG  176 (291)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCC-CG--GGGGCTTCCEEECCSS--CCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTT
T ss_pred             -hhhccCCCCCEEECCCCcCCC-Ch--hhcCCCCCCEEEccCC--cCCcc---hhhccCCCCCEEEccCCccccchhhcC
Confidence             348999999999999999986 43  5889999999999999  66554   368899999999999999999888999


Q ss_pred             CCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      +++|+.|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus       177 l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          177 LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            9999999999999995 45 48999999999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=1.1e-19  Score=173.16  Aligned_cols=161  Identities=27%  Similarity=0.222  Sum_probs=127.1

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      +++++|+|++|.+++..+.    .|.++++|++|+|++|++++..+..|.++++|++|+|++|++++ +|+..|.++++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCC
Confidence            3688899999998888776    78888999999999998887777788888999999999998874 666578888999


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCcccccCCCCC----
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEGLANLTNL----  278 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----  278 (299)
                      ++|++++|  .+.+..+ ..++.+++|++|++++|.++...   .+..+++|++|++++|++++..|..+..+.++    
T Consensus       127 ~~L~Ls~N--~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~  203 (635)
T 4g8a_A          127 QKLVAVET--NLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  203 (635)
T ss_dssp             CEEECTTS--CCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             CEEECCCC--cCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence            99999988  6655433 56888889999999999887642   36778889999999998888777777654433    


Q ss_pred             CEEecCCCCCCCccCC
Q 022302          279 QVLDLSDNQNLTTLGK  294 (299)
Q Consensus       279 ~~L~l~~N~l~g~ip~  294 (299)
                      ..++++.|++....|.
T Consensus       204 ~~~~ls~n~l~~i~~~  219 (635)
T 4g8a_A          204 LSLDLSLNPMNFIQPG  219 (635)
T ss_dssp             CEEECTTCCCCEECTT
T ss_pred             hhhhcccCcccccCcc
Confidence            4678888888654443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=3.2e-19  Score=148.74  Aligned_cols=133  Identities=26%  Similarity=0.317  Sum_probs=112.5

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      +++++|++++|.+++..+.    .|..+++|++|++++|.+++..|..|..+++|++|+|++|+++. +|...|..+++|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             cCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCC
Confidence            5789999999999988776    78889999999999999988778889999999999999999984 666567889999


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCc
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIH  266 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~  266 (299)
                      ++|++++|  .+.+..+ ..+..+++|++|++++|++++.+.  +..+++|+.|++++|.+..
T Consensus       107 ~~L~L~~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          107 QLLLLNAN--KINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEEECCCC--CCCEeCH-HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99999999  7766655 678888889999999998887764  7778888888888888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=1.4e-19  Score=170.18  Aligned_cols=166  Identities=21%  Similarity=0.157  Sum_probs=116.0

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch--HhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL--PYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      +.++++|++|++++|.+.+..+.. ...+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|. .+
T Consensus       330 ~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~  406 (549)
T 2z81_A          330 SQHLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD-SC  406 (549)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS-CC
T ss_pred             HhcCccccEEEccCCccccccccc-hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh-hh
Confidence            356778888888888887765421 1135677788888888888775432  45777788888888888777 4665 56


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchh-----------------hhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCC
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRL-----------------GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYN  262 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~-----------------~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N  262 (299)
                      ..+++|++|++++|  .+.. ++..                 ....+++|++|++++|+++..+....+++|+.|++++|
T Consensus       407 ~~~~~L~~L~Ls~N--~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N  483 (549)
T 2z81_A          407 QWPEKMRFLNLSST--GIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRN  483 (549)
T ss_dssp             CCCTTCCEEECTTS--CCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSS
T ss_pred             cccccccEEECCCC--Cccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCC
Confidence            67777777777777  3321 1100                 11356777888888888777666667788888888888


Q ss_pred             ccCccCcccccCCCCCCEEecCCCCCCCccC
Q 022302          263 YYIHSSLEGLANLTNLQVLDLSDNQNLTTLG  293 (299)
Q Consensus       263 ~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip  293 (299)
                      ++++..|+.+..+++|++|++++|++.+..|
T Consensus       484 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            8887777778888888888888888877665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=2.7e-20  Score=163.14  Aligned_cols=164  Identities=22%  Similarity=0.159  Sum_probs=137.6

Q ss_pred             CCCccEEeCCCCCCCCcchhhhHHhh--cCCCCCCEEECCCCCCCccch----HhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302          125 FEELQRLDLPGNWFTGIYENRAYDSF--GSLKQLKMLNLGDNFFNDSIL----PYLNTLTSLTTLILSDNSIEGSRTKQG  198 (299)
Q Consensus       125 l~~L~~L~L~~n~l~~~~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~~  198 (299)
                      +++|++|++++|.+.+..|.    .+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+. ++..
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~----~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~  164 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPP----LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQ  164 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCC----CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTS
T ss_pred             cCceeEEEeeCCEeccchhh----hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHH
Confidence            45699999999999998886    66  889999999999999987544    3456799999999999999864 4447


Q ss_pred             hcCCCCCCEEECCCCcCCCCCc--cc-hhhhccCCCCcEEECCCCCCCCccc-----ccCCCCCCEEeCCCCccCccCcc
Q 022302          199 LANLRYLQVLDLSGNFNITSGS--LT-RLGLANLTNLKKLDLGSCGITTIQG-----LAKLKNLEALDLSYNYYIHSSLE  270 (299)
Q Consensus       199 ~~~l~~L~~L~Ls~n~~~~~~~--~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-----l~~l~~L~~L~L~~N~l~~~~p~  270 (299)
                      +..+++|++|++++|  .+.+.  ++ ...+..+++|++|++++|+++..+.     +..+++|++|+|++|.+++..|+
T Consensus       165 ~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          165 VRAFPALTSLDLSDN--PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             CCCCTTCCEEECCSC--TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred             hccCCCCCEEECCCC--CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence            899999999999999  65542  22 1234678999999999999987653     46789999999999999988888


Q ss_pred             cccCC---CCCCEEecCCCCCCCccCCCc
Q 022302          271 GLANL---TNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       271 ~l~~l---~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      .+..+   ++|++|++++|+++ .+|..+
T Consensus       243 ~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~  270 (310)
T 4glp_A          243 SAPRCMWSSALNSLNLSFAGLE-QVPKGL  270 (310)
T ss_dssp             CCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred             hHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence            88877   69999999999998 688765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=5e-19  Score=170.78  Aligned_cols=170  Identities=26%  Similarity=0.246  Sum_probs=106.5

Q ss_pred             ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCc--------------------------cchH
Q 022302          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND--------------------------SILP  172 (299)
Q Consensus       119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--------------------------~~p~  172 (299)
                      +..+..+++|++|++++|.+.+.++..   .+..+++|++|++++|++.+                          ..|.
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~  474 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQ---EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS  474 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSG---GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcc---cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence            445666677777777777666544321   45555555555555555433                          3455


Q ss_pred             hhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccc-------hhhhccCCCCcEEECCCCCCCCc
Q 022302          173 YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT-------RLGLANLTNLKKLDLGSCGITTI  245 (299)
Q Consensus       173 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~  245 (299)
                      .+..+++|++|++++|++++ +++..+..+++|++|++++|  .+.+..+       ...+..+++|++|++++|+++..
T Consensus       475 ~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i  551 (680)
T 1ziw_A          475 PFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHN--NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI  551 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS--CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred             ccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCC--CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence            56666677777777777664 44445667777777777777  4433211       01256667777777777777765


Q ss_pred             cc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302          246 QG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       246 ~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      +.  +..+++|+.|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK  602 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence            53  66777777777777777755555567777777777777777765443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=1.9e-19  Score=177.84  Aligned_cols=91  Identities=27%  Similarity=0.294  Sum_probs=49.7

Q ss_pred             ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHh--hccCCCCcEEeCCCCcCCCcchh
Q 022302          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTK  196 (299)
Q Consensus       119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~  196 (299)
                      +..|+++++|++|+|++|.+.+..|.    .|.++++|++|++++|.+++.+|..  +.++++|++|++++|.+.+..+.
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~  141 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPD----AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH  141 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTT----SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHh----HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc
Confidence            34455566666666666666555554    5555556666666655555544333  55555555555555555543332


Q ss_pred             hhhcCCCCCCEEECCCC
Q 022302          197 QGLANLRYLQVLDLSGN  213 (299)
Q Consensus       197 ~~~~~l~~L~~L~Ls~n  213 (299)
                      ..++++++|++|++++|
T Consensus       142 ~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          142 PSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             GGGGTCSSCCEEEEESS
T ss_pred             hhHhhCCCCCEEECCCC
Confidence            34555555555555555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.81  E-value=9.1e-19  Score=161.82  Aligned_cols=152  Identities=30%  Similarity=0.363  Sum_probs=113.1

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  200 (299)
                      .+..+++|++|++++|.+.+..+      +..+++|++|++++|.+++..+  +..+++|++|++++|++.+ +++  +.
T Consensus       238 ~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~  306 (466)
T 1o6v_A          238 TLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP--IS  306 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG--GG
T ss_pred             hhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC-chh--hc
Confidence            45566777777777777766532      5667777777777777776433  6777788888888887775 332  67


Q ss_pred             CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCE
Q 022302          201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV  280 (299)
Q Consensus       201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  280 (299)
                      .+++|++|++++|  .+.+..+   +..+++|+.|++++|.+++.+.+..+++|+.|++++|++++..|  +..+++|++
T Consensus       307 ~l~~L~~L~L~~n--~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  379 (466)
T 1o6v_A          307 NLKNLTYLTLYFN--NISDISP---VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ  379 (466)
T ss_dssp             GCTTCSEEECCSS--CCSCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred             CCCCCCEEECcCC--cCCCchh---hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence            7788888888888  6665543   56778888888888888887778888888888888888887666  788888888


Q ss_pred             EecCCCCCCC
Q 022302          281 LDLSDNQNLT  290 (299)
Q Consensus       281 L~l~~N~l~g  290 (299)
                      |++++|++++
T Consensus       380 L~l~~n~~~~  389 (466)
T 1o6v_A          380 LGLNDQAWTN  389 (466)
T ss_dssp             EECCCEEEEC
T ss_pred             EeccCCcccC
Confidence            8888888876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=1.2e-18  Score=154.61  Aligned_cols=156  Identities=30%  Similarity=0.327  Sum_probs=124.0

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  201 (299)
                      +..+++|++|++++|.+.+..      .+..+++|++|++++|.+.+..+  +..+++|++|++++|++++ ++.  +..
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~--~~~  241 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDIS------PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP--LAN  241 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCG------GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTT
T ss_pred             hccCCCCCEEEccCCcccccc------cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc--hhc
Confidence            556677777777777776543      25667777777777777765443  7788888888888888875 443  788


Q ss_pred             CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302          202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL  281 (299)
Q Consensus       202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  281 (299)
                      +++|++|++++|  .+.+.   ..+..+++|++|++++|.+++.+.+..+++|+.|++++|.+++..|+.+..+++|++|
T Consensus       242 l~~L~~L~l~~n--~l~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          242 LSQLTWLEIGTN--QISDI---NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             CTTCCEEECCSS--CCCCC---GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             CCCCCEEECCCC--ccCCC---hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            889999999988  55543   3577889999999999999888778889999999999999998888889999999999


Q ss_pred             ecCCCCCCCccC
Q 022302          282 DLSDNQNLTTLG  293 (299)
Q Consensus       282 ~l~~N~l~g~ip  293 (299)
                      ++++|++++..|
T Consensus       317 ~L~~n~l~~~~~  328 (347)
T 4fmz_A          317 FLSQNHITDIRP  328 (347)
T ss_dssp             ECCSSSCCCCGG
T ss_pred             EccCCccccccC
Confidence            999999987655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=1e-19  Score=159.90  Aligned_cols=156  Identities=20%  Similarity=0.124  Sum_probs=127.4

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.+++..+       ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+...+..+++|
T Consensus        99 ~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  171 (317)
T 3o53_A           99 PSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (317)
T ss_dssp             TTCCEEECCSSCCSEEEE-------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             CCcCEEECCCCccCCcCc-------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence            566666666666666543       3467899999999999987777889999999999999999975554333578999


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecC
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLS  284 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~  284 (299)
                      ++|++++|  .+.+. +  ....+++|++|++++|++++.+ .+..+++|+.|++++|.++ .+|+.+..+++|+.|+++
T Consensus       172 ~~L~L~~N--~l~~~-~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          172 EHLNLQYN--FIYDV-K--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             CEEECTTS--CCCEE-E--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred             CEEECCCC--cCccc-c--cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence            99999999  66544 3  2345899999999999999875 4888999999999999999 578889999999999999


Q ss_pred             CCCCC-CccCC
Q 022302          285 DNQNL-TTLGK  294 (299)
Q Consensus       285 ~N~l~-g~ip~  294 (299)
                      +|++. +.+|.
T Consensus       246 ~N~~~~~~~~~  256 (317)
T 3o53_A          246 GNGFHCGTLRD  256 (317)
T ss_dssp             TCCCBHHHHHH
T ss_pred             CCCccCcCHHH
Confidence            99998 55443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=2e-19  Score=167.20  Aligned_cols=156  Identities=21%  Similarity=0.128  Sum_probs=136.0

Q ss_pred             CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc-CCC
Q 022302          125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA-NLR  203 (299)
Q Consensus       125 l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~l~  203 (299)
                      .++|++|++++|.+++..+.       .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|. .+. .++
T Consensus        98 ~~~L~~L~L~~N~l~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~  169 (487)
T 3oja_A           98 GPSIETLHAANNNISRVSCS-------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSD  169 (487)
T ss_dssp             CTTCCEEECCSSCCCCEEEC-------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-GGGGGTT
T ss_pred             CCCcCEEECcCCcCCCCCcc-------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH-HHhhhCC
Confidence            48999999999999998653       468999999999999998888899999999999999999986665 454 899


Q ss_pred             CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEe
Q 022302          204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLD  282 (299)
Q Consensus       204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  282 (299)
                      +|++|++++|  .+.+. +  ....+++|++|++++|.+++.++ +..+++|+.|++++|.+++ +|..+..+++|+.|+
T Consensus       170 ~L~~L~Ls~N--~l~~~-~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          170 TLEHLNLQYN--FIYDV-K--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD  243 (487)
T ss_dssp             TCCEEECTTS--CCCEE-E--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred             cccEEecCCC--ccccc-c--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEE
Confidence            9999999999  76655 3  24468999999999999998754 8889999999999999995 788899999999999


Q ss_pred             cCCCCCC-CccCC
Q 022302          283 LSDNQNL-TTLGK  294 (299)
Q Consensus       283 l~~N~l~-g~ip~  294 (299)
                      +++|++. +.+|.
T Consensus       244 l~~N~l~c~~~~~  256 (487)
T 3oja_A          244 LRGNGFHCGTLRD  256 (487)
T ss_dssp             CTTCCBCHHHHHH
T ss_pred             cCCCCCcCcchHH
Confidence            9999998 55544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=6.9e-19  Score=146.67  Aligned_cols=130  Identities=23%  Similarity=0.250  Sum_probs=58.3

Q ss_pred             CCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcE
Q 022302          155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK  234 (299)
Q Consensus       155 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~  234 (299)
                      +|++|++++|.+++..+..+..+++|++|+|++|++++..| ..|..+++|++|++++|  .+.. ++...+..+++|++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N--~l~~-l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGN--KITE-LPKSLFEGLFSLQL  108 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSS--CCCC-CCTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCC--cCCc-cCHhHccCCCCCCE
Confidence            44444444444444333344444444444444444443222 24444444444444444  3332 22133444444444


Q ss_pred             EECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCC
Q 022302          235 LDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN  288 (299)
Q Consensus       235 L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l  288 (299)
                      |++++|++++.+  .+..+++|+.|+|++|.+++..+..+..+++|++|++++|++
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            444444444432  244444444444444444444444444444444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=2.1e-19  Score=160.84  Aligned_cols=156  Identities=26%  Similarity=0.193  Sum_probs=135.5

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhc-CCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFG-SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY  204 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  204 (299)
                      +.++.|+|++|.+++..+.    .+. .+++|++|+|++|++++..+..|..+++|++|+|++|++++ ++...|..+++
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~  113 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQA  113 (361)
T ss_dssp             TTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTT
T ss_pred             CCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcC
Confidence            4589999999999998876    676 89999999999999998878889999999999999999985 56557899999


Q ss_pred             CCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--c---cCCCCCCEEeCCCCccCccCcccccCCCC--
Q 022302          205 LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--L---AKLKNLEALDLSYNYYIHSSLEGLANLTN--  277 (299)
Q Consensus       205 L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~--  277 (299)
                      |++|+|++|  .+.+..+ ..+..+++|++|+|++|+++..+.  +   ..+++|+.|+|++|++++..+..+..++.  
T Consensus       114 L~~L~L~~N--~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~  190 (361)
T 2xot_A          114 LEVLLLYNN--HIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV  190 (361)
T ss_dssp             CCEEECCSS--CCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred             CCEEECCCC--cccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence            999999999  7766555 788999999999999999998764  3   57899999999999999766677888877  


Q ss_pred             CCEEecCCCCCC
Q 022302          278 LQVLDLSDNQNL  289 (299)
Q Consensus       278 L~~L~l~~N~l~  289 (299)
                      ++.|++++|++.
T Consensus       191 l~~l~l~~N~~~  202 (361)
T 2xot_A          191 KNGLYLHNNPLE  202 (361)
T ss_dssp             HTTEECCSSCEE
T ss_pred             cceEEecCCCcc
Confidence            488999999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=9.1e-19  Score=163.77  Aligned_cols=140  Identities=24%  Similarity=0.242  Sum_probs=122.1

Q ss_pred             cCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCC--cchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302          151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN  228 (299)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~  228 (299)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|++++  .+|. .+..+++|++|++++|  .+.+.+|...+..
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-~~~~l~~L~~L~Ls~N--~l~~~l~~~~~~~  397 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE-MTTQMKSLQQLDISQN--SVSYDEKKGDCSW  397 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH-HHTTCTTCCEEECCSS--CCBCCGGGCSCCC
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH-HHhhCCCCCEEECCCC--cCCcccccchhcc
Confidence            678999999999999999889999999999999999999986  3443 6899999999999999  7777677456888


Q ss_pred             CCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302          229 LTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       229 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~  295 (299)
                      +++|++|++++|++++..+-.-.++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus       398 l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~  462 (520)
T 2z7x_B          398 TKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG  462 (520)
T ss_dssp             CTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred             CccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence            9999999999999986543222279999999999999 88988889999999999999998 57765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=1.7e-18  Score=164.64  Aligned_cols=169  Identities=33%  Similarity=0.374  Sum_probs=142.3

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.|++++ .+..             .+.+..+++|+.|+|++|.+.+..+      +..+++|+.|+|++|.+++ +
T Consensus        43 ~~L~~L~l~~n~i~~-------------l~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~-l  102 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS-------------VQGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD-L  102 (605)
T ss_dssp             TTCCCCBCTTCCCCC-------------CTTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC-C
T ss_pred             CCCCEEECcCCCCCC-------------ChHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC-C
Confidence            3566667766 4333             2347789999999999999998753      7889999999999999986 3


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK  250 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~  250 (299)
                      | .+..+++|++|+|++|.+.+ ++  .+..+++|+.|+|++|  .+.+.   ..+..+++|+.|+|++|.+++.+++..
T Consensus       103 ~-~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N--~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~l~~  173 (605)
T 1m9s_A          103 S-SLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNN--KITDI---TVLSRLTKLDTLSLEDNQISDIVPLAG  173 (605)
T ss_dssp             T-TSTTCTTCCEEECTTSCCCC-CG--GGGGCTTCSEEECCSS--CCCCC---GGGGSCTTCSEEECCSSCCCCCGGGTT
T ss_pred             h-hhccCCCCCEEEecCCCCCC-Cc--cccCCCccCEEECCCC--ccCCc---hhhcccCCCCEEECcCCcCCCchhhcc
Confidence            3 68899999999999999986 44  5889999999999999  66654   368899999999999999999888999


Q ss_pred             CCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCc
Q 022302          251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTT  291 (299)
Q Consensus       251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~  291 (299)
                      +++|+.|+|++|.+++ + +.+..+++|+.|+|++|++.+.
T Consensus       174 l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          174 LTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence            9999999999999996 3 4689999999999999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.79  E-value=1.4e-20  Score=182.70  Aligned_cols=221  Identities=21%  Similarity=0.129  Sum_probs=107.8

Q ss_pred             chHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCcEEEeeeCc-cccccccCCCCcc
Q 022302           36 CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSA  114 (299)
Q Consensus        36 ~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~-~l~~~~~~~~~~~  114 (299)
                      ..+.+++++.++..+.....   +  ..-..|...    ....+ .|.++.+..  .+++.+++.. .+...        
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~---~--~~~~~~~~~----~~~~~-~~~~~~~s~--~~~~~l~L~~n~~~~~--------  188 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSK---T--AKKQQPTGD----STPSG-TATNSAVST--PLTPKIELFANGKDEA--------  188 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHH---T--TC----------------------------------------------------
T ss_pred             ccccchhhhhhhhhhccccc---C--cccCCCcCC----CCccc-cCCCceecC--CccceEEeeCCCCCcc--------
Confidence            45678899999998874432   1  233456541    23445 899998864  6788888866 33320        


Q ss_pred             ccccccccCCCCCccEEeCCCCCCCC---------cchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeC
Q 022302          115 LLLNMSLFHPFEELQRLDLPGNWFTG---------IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLIL  185 (299)
Q Consensus       115 ~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  185 (299)
                          +     ...++.++|+.|.+.+         ..+.    .+..++.|+.|+|++|.+. .+|..+..+++|++|+|
T Consensus       189 ----~-----~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~----~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~L  254 (727)
T 4b8c_D          189 ----N-----QALLQHKKLSQYSIDEDDDIENRMVMPKD----SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYL  254 (727)
T ss_dssp             ----------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBC
T ss_pred             ----h-----hhHhhcCccCcccccCccccccceecChh----hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEe
Confidence                0     0112223333332222         2232    5677777777777777776 45655667777777777


Q ss_pred             CCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCcc
Q 022302          186 SDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYY  264 (299)
Q Consensus       186 ~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l  264 (299)
                      ++|.++ .+|. .+..+++|++|+|++|  .+. .+| ..+..+++|++|+|++|.++.++. ++.+++|+.|+|++|.+
T Consensus       255 s~N~l~-~lp~-~~~~l~~L~~L~Ls~N--~l~-~lp-~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          255 NGNSLT-ELPA-EIKNLSNLRVLDLSHN--RLT-SLP-AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             TTSCCS-CCCG-GGGGGTTCCEEECTTS--CCS-SCC-SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             eCCcCc-ccCh-hhhCCCCCCEEeCcCC--cCC-ccC-hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence            777777 5665 5777777777777777  555 456 567777777777777777776653 77777777777777777


Q ss_pred             CccCcccccCCCC-CCEEecCCCCCCCccCCCc
Q 022302          265 IHSSLEGLANLTN-LQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       265 ~~~~p~~l~~l~~-L~~L~l~~N~l~g~ip~~~  296 (299)
                      ++.+|+.+..+.. +..+++++|.++|.+|..+
T Consensus       329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             CCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence            7777766643321 1235566666666666544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=2.6e-18  Score=149.22  Aligned_cols=154  Identities=29%  Similarity=0.330  Sum_probs=135.2

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  201 (299)
                      +..+++|++|++++|.+... +     .+..+++|++|++++|.+++..+  +..+++|++|++++|++++ ++  .+..
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~--~l~~  110 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-----GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS--SLKD  110 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG--GGTT
T ss_pred             hhhcCcccEEEccCCCcccC-h-----hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch--hhcc
Confidence            45678999999999999876 3     57889999999999999997554  8999999999999999986 44  4899


Q ss_pred             CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302          202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL  281 (299)
Q Consensus       202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  281 (299)
                      +++|++|++++|  .+.+.   ..+..+++|++|++++|++++...+..+++|+.|++++|.+++..|  +..+++|++|
T Consensus       111 l~~L~~L~L~~n--~i~~~---~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L  183 (291)
T 1h6t_A          111 LKKLKSLSLEHN--GISDI---NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL  183 (291)
T ss_dssp             CTTCCEEECTTS--CCCCC---GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             CCCCCEEECCCC--cCCCC---hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence            999999999999  66553   3578999999999999999999889999999999999999996544  9999999999


Q ss_pred             ecCCCCCCCccCC
Q 022302          282 DLSDNQNLTTLGK  294 (299)
Q Consensus       282 ~l~~N~l~g~ip~  294 (299)
                      ++++|++++ +|.
T Consensus       184 ~L~~N~i~~-l~~  195 (291)
T 1h6t_A          184 YLSKNHISD-LRA  195 (291)
T ss_dssp             ECCSSCCCB-CGG
T ss_pred             ECCCCcCCC-Chh
Confidence            999999975 443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=7.5e-19  Score=150.44  Aligned_cols=152  Identities=24%  Similarity=0.299  Sum_probs=129.0

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  200 (299)
                      .+..+++|++|++++|.++.. +     .+..+++|++|++++|++++..+  +..+++|++|++++|++++ ++.  +.
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l-~-----~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~--~~  104 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSL-A-----GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG--IP  104 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT--CC
T ss_pred             chhhcCcCcEEECcCCCcccc-h-----HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc--cc
Confidence            456788999999999998865 3     57789999999999999987554  8899999999999999985 554  33


Q ss_pred             CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCE
Q 022302          201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV  280 (299)
Q Consensus       201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  280 (299)
                      . ++|++|++++|  .+.+. +  .+..+++|++|++++|++++.+.+..+++|+.|++++|++++.  +.+..+++|+.
T Consensus       105 ~-~~L~~L~L~~N--~l~~~-~--~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~  176 (263)
T 1xeu_A          105 S-ACLSRLFLDNN--ELRDT-D--SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW  176 (263)
T ss_dssp             C-SSCCEEECCSS--CCSBS-G--GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred             c-CcccEEEccCC--ccCCC-h--hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence            4 89999999999  66553 3  5888999999999999999988889999999999999999965  67889999999


Q ss_pred             EecCCCCCCCc
Q 022302          281 LDLSDNQNLTT  291 (299)
Q Consensus       281 L~l~~N~l~g~  291 (299)
                      |++++|++.+.
T Consensus       177 L~l~~N~~~~~  187 (263)
T 1xeu_A          177 IDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEECC
T ss_pred             EeCCCCcccCC
Confidence            99999998754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.79  E-value=4.7e-18  Score=157.02  Aligned_cols=154  Identities=32%  Similarity=0.344  Sum_probs=123.0

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  201 (299)
                      ++.+++|++|++++|.+.+. +     .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ +++  +..
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~  285 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDI-G-----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP--LAG  285 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG--GTT
T ss_pred             ccccCCCCEEECCCCCcccc-h-----hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc--ccC
Confidence            45567777777777777664 2     56778888888888888876544  7788888888888888875 443  778


Q ss_pred             CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302          202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL  281 (299)
Q Consensus       202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  281 (299)
                      +++|++|++++|  .+.+..+   +..+++|+.|++++|++++..++..+++|+.|++++|.+++.  +.+..+++|+.|
T Consensus       286 l~~L~~L~L~~n--~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  358 (466)
T 1o6v_A          286 LTALTNLELNEN--QLEDISP---ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL  358 (466)
T ss_dssp             CTTCSEEECCSS--CCSCCGG---GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             CCccCeEEcCCC--cccCchh---hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence            888999999888  6655432   678899999999999998887788899999999999999864  468899999999


Q ss_pred             ecCCCCCCCccC
Q 022302          282 DLSDNQNLTTLG  293 (299)
Q Consensus       282 ~l~~N~l~g~ip  293 (299)
                      ++++|++++..|
T Consensus       359 ~l~~n~l~~~~~  370 (466)
T 1o6v_A          359 SAGHNQISDLTP  370 (466)
T ss_dssp             ECCSSCCCBCGG
T ss_pred             eCCCCccCccch
Confidence            999999988776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.79  E-value=7.4e-19  Score=165.89  Aligned_cols=160  Identities=29%  Similarity=0.359  Sum_probs=96.1

Q ss_pred             ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (299)
Q Consensus       119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  198 (299)
                      +..|.++++|++|++++|.+.+..+.    .|.++++|++|++++|.+++..|..|+.+++|++|++++|++++ ++...
T Consensus        45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~  119 (570)
T 2z63_A           45 SYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFP  119 (570)
T ss_dssp             TTTTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCS
T ss_pred             hhHhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-CCCcc
Confidence            34556666666666666666665554    56666666666666666665555666666666666666666654 33324


Q ss_pred             hcCCCCCCEEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCC----CEEeCCCCccCccCccc
Q 022302          199 LANLRYLQVLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNL----EALDLSYNYYIHSSLEG  271 (299)
Q Consensus       199 ~~~l~~L~~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L----~~L~L~~N~l~~~~p~~  271 (299)
                      ++.+++|++|++++|  .+.+ .+| ..+.++++|++|++++|++++.+  .+..+++|    +.|++++|.+++..|..
T Consensus       120 ~~~l~~L~~L~L~~n--~l~~~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~  196 (570)
T 2z63_A          120 IGHLKTLKELNVAHN--LIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA  196 (570)
T ss_dssp             CTTCTTCCEEECCSS--CCCCCCCC-GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred             ccccccccEEecCCC--ccceecCh-hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHH
Confidence            666666666666666  4443 234 55666666666666666665543  24444444    56666666666555555


Q ss_pred             ccCCCCCCEEecCCCC
Q 022302          272 LANLTNLQVLDLSDNQ  287 (299)
Q Consensus       272 l~~l~~L~~L~l~~N~  287 (299)
                      +... +|++|++++|.
T Consensus       197 ~~~~-~L~~L~l~~n~  211 (570)
T 2z63_A          197 FKEI-RLHKLTLRNNF  211 (570)
T ss_dssp             TTTC-EEEEEEEESCC
T ss_pred             hccC-cceeEeccccc
Confidence            5444 56666666664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=6.2e-19  Score=166.61  Aligned_cols=137  Identities=22%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.+++..+.    .|..+++|++|++++|.+++..|..|..+++|++|++++|+++ .+|. .  .+++|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~--~l~~L  123 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMP----DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC-C--PMASL  123 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGG----GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECS-C--CCTTC
T ss_pred             CCcCEEECCCCCccccChh----hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCc-c--ccccC
Confidence            5666677777766666655    6666667777777777666655666666667777777776666 4554 2  56667


Q ss_pred             CEEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCcccccCCCCC--CEEeCCCCcc--CccCcccccC
Q 022302          206 QVLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNL--EALDLSYNYY--IHSSLEGLAN  274 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L--~~L~L~~N~l--~~~~p~~l~~  274 (299)
                      ++|++++|  .+.+ ..| ..+..+++|++|++++|++++. .+..+++|  ++|++++|.+  ++..|..+..
T Consensus       124 ~~L~Ls~N--~l~~l~~p-~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~  193 (562)
T 3a79_B          124 RHLDLSFN--DFDVLPVC-KEFGNLTKLTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQI  193 (562)
T ss_dssp             SEEECCSS--CCSBCCCC-GGGGGCTTCCEEEEECSBCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred             CEEECCCC--CccccCch-HhhcccCcccEEecCCCccccC-chhhhhhceeeEEEeecccccccccCcccccc
Confidence            77777766  4444 223 4566666677777766666542 23444444  6666666666  4444444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=3e-19  Score=168.27  Aligned_cols=186  Identities=17%  Similarity=0.163  Sum_probs=127.8

Q ss_pred             CCCce-EecCCCCcEEEeeeCc-cccccccCCCCc-ccccccc--cc----CCCCCccEEeCCCCCCCCcchhhhHHhhc
Q 022302           81 DWEGV-KCNATTRRVMQLSLNE-TIKFNYSSGSGS-ALLLNMS--LF----HPFEELQRLDLPGNWFTGIYENRAYDSFG  151 (299)
Q Consensus        81 ~w~gv-~C~~~~~~v~~l~l~~-~l~~~~~~~~~~-~~~~~~~--~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  151 (299)
                      .|.|+ .|..  .+++.+++++ ++.+ ++..... ...+..+  .+    ..+++|++|++++|.+++ +|     .+.
T Consensus        49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip-----~l~  119 (571)
T 3cvr_A           49 AVSLLKECLI--NQFSELQLNRLNLSS-LPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-LP-----ELP  119 (571)
T ss_dssp             HHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC-----CCC
T ss_pred             hhhhcccccc--CCccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cc-----hhh
Confidence            48888 7864  4688888888 6554 3322110 0000000  00    345677777777777776 34     222


Q ss_pred             CCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCC
Q 022302          152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN  231 (299)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~  231 (299)
                      .  +|++|++++|.+++ +|.   .+++|++|++++|++++ +|.    .+++|++|++++|  .+.+ +| . +.  ++
T Consensus       120 ~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N--~L~~-lp-~-l~--~~  181 (571)
T 3cvr_A          120 A--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNN--QLTF-LP-E-LP--ES  181 (571)
T ss_dssp             T--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSS--CCSC-CC-C-CC--TT
T ss_pred             c--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCC--CCCC-cc-h-hh--CC
Confidence            2  77888888888776 454   56788888888888875 553    5678888888888  6655 55 3 44  78


Q ss_pred             CcEEECCCCCCCCcccccCCCCC-------CEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          232 LKKLDLGSCGITTIQGLAKLKNL-------EALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       232 L~~L~Ls~n~l~~~~~l~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      |++|++++|+++.++.+..  +|       +.|+|++|.++ .+|+.+..+++|+.|++++|++++.+|..+
T Consensus       182 L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          182 LEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CCEEECCSSCCSSCCCCC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             CCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            9999999998887766333  67       99999999998 688888889999999999999998877643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=1.4e-18  Score=142.27  Aligned_cols=151  Identities=21%  Similarity=0.231  Sum_probs=125.7

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.+++++ .+..             ...+..+++|++|++++|.++..  .    .+..+++|++|++++|.+++..
T Consensus        44 ~~L~~L~l~~n~i~~-------------l~~l~~l~~L~~L~l~~n~~~~~--~----~l~~l~~L~~L~l~~n~l~~~~  104 (197)
T 4ezg_A           44 NSLTYITLANINVTD-------------LTGIEYAHNIKDLTINNIHATNY--N----PISGLSNLERLRIMGKDVTSDK  104 (197)
T ss_dssp             HTCCEEEEESSCCSC-------------CTTGGGCTTCSEEEEESCCCSCC--G----GGTTCTTCCEEEEECTTCBGGG
T ss_pred             CCccEEeccCCCccC-------------hHHHhcCCCCCEEEccCCCCCcc--h----hhhcCCCCCEEEeECCccCccc
Confidence            3577788877 4432             12477889999999999977654  2    6889999999999999999878


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK  250 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~  250 (299)
                      +..++.+++|++|++++|++++..+. .+..+++|++|++++|  ...+.++  .+..+++|++|++++|.+++.+.+..
T Consensus       105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n--~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~~l~~  179 (197)
T 4ezg_A          105 IPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYN--GAITDIM--PLKTLPELKSLNIQFDGVHDYRGIED  179 (197)
T ss_dssp             SCCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSC--TBCCCCG--GGGGCSSCCEEECTTBCCCCCTTGGG
T ss_pred             ChhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCC--CCccccH--hhcCCCCCCEEECCCCCCcChHHhcc
Confidence            88899999999999999999976665 7999999999999999  6444555  58899999999999999999888999


Q ss_pred             CCCCCEEeCCCCccCc
Q 022302          251 LKNLEALDLSYNYYIH  266 (299)
Q Consensus       251 l~~L~~L~L~~N~l~~  266 (299)
                      +++|+.|++++|++.+
T Consensus       180 l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          180 FPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSCCEEEECBC----
T ss_pred             CCCCCEEEeeCcccCC
Confidence            9999999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=1e-18  Score=166.49  Aligned_cols=178  Identities=28%  Similarity=0.300  Sum_probs=143.5

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      ..++.|+|++ .+++           +++..|.++++|++|+|++|.++++.+.    +|.++++|++|+|++|++++..
T Consensus        52 ~~~~~LdLs~N~i~~-----------l~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH-----------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             TTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEEC
T ss_pred             cCCCEEEeeCCCCCC-----------CCHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCC
Confidence            3577888877 5544           5567899999999999999999998887    8999999999999999999877


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCccc--
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTIQG--  247 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--  247 (299)
                      +..|.++++|++|++++|++++ +++..|+.+++|++|++++|  .+.+ ..| ..+..+++|++|++++|++++...  
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N--~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHN--LIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSS--CCCCCCCC-GGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccC--ccccCCCc-hhhccchhhhhhcccCcccccccccc
Confidence            7889999999999999999986 66557999999999999999  6654 345 678899999999999999987642  


Q ss_pred             ccCCC----CCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCC
Q 022302          248 LAKLK----NLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       248 l~~l~----~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  289 (299)
                      +..++    ....++++.|.++...+. ......++.+++.+|...
T Consensus       193 l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~  237 (635)
T 4g8a_A          193 LRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDS  237 (635)
T ss_dssp             GHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSS
T ss_pred             ccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhccccc
Confidence            33332    345788999998854444 334445677777777554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=4.1e-19  Score=149.72  Aligned_cols=160  Identities=17%  Similarity=0.144  Sum_probs=135.6

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCccchHhhccCCCCcEEeCCC-CcCCCcchhhhhcCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLNTLTSLTTLILSD-NSIEGSRTKQGLANLR  203 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~  203 (299)
                      +++++|++++|.+++..+.    .+..+++|++|++++|. ++...+..+..+++|++|++++ |++++ +++..|..++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~  105 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELP  105 (239)
T ss_dssp             TTCCEEEEESCCCSEECTT----TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCT
T ss_pred             CcccEEEEeCCcceEECHH----HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCC
Confidence            3799999999999998876    78999999999999997 8876667899999999999998 99984 6655789999


Q ss_pred             CCCEEECCCCcCCCCCccchhhhccCCCCc---EEECCCC-CCCCccc--ccCCCCCC-EEeCCCCccCccCcccccCCC
Q 022302          204 YLQVLDLSGNFNITSGSLTRLGLANLTNLK---KLDLGSC-GITTIQG--LAKLKNLE-ALDLSYNYYIHSSLEGLANLT  276 (299)
Q Consensus       204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~--l~~l~~L~-~L~L~~N~l~~~~p~~l~~l~  276 (299)
                      +|++|++++|  .+.+ +| . +..+++|+   +|++++| ++++.+.  +..+++|+ +|++++|.++ .+|......+
T Consensus       106 ~L~~L~l~~n--~l~~-lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~  179 (239)
T 2xwt_C          106 LLKFLGIFNT--GLKM-FP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT  179 (239)
T ss_dssp             TCCEEEEEEE--CCCS-CC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC
T ss_pred             CCCEEeCCCC--CCcc-cc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC
Confidence            9999999999  6665 56 3 78888888   9999999 8988764  88899999 9999999999 5665544448


Q ss_pred             CCCEEecCCCC-CCCccCCCc
Q 022302          277 NLQVLDLSDNQ-NLTTLGKPL  296 (299)
Q Consensus       277 ~L~~L~l~~N~-l~g~ip~~~  296 (299)
                      +|++|++++|+ +.+..|..+
T Consensus       180 ~L~~L~L~~n~~l~~i~~~~~  200 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTVIDKDAF  200 (239)
T ss_dssp             EEEEEECTTCTTCCEECTTTT
T ss_pred             CCCEEEcCCCCCcccCCHHHh
Confidence            99999999996 875334433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.77  E-value=2.8e-17  Score=145.82  Aligned_cols=154  Identities=29%  Similarity=0.297  Sum_probs=84.7

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh-----
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK-----  196 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-----  196 (299)
                      +..+++|++|++++|.++.. +     .+..+++|++|++++|.+.+..+  +..+++|++|++++|.....++.     
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~-~-----~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~  155 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDI-S-----ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMT  155 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCT
T ss_pred             hhcCCcCCEEEccCCcccCc-h-----HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCC
Confidence            55566666666666666553 2     45566666666666666554322  45555555555555543322221     


Q ss_pred             ---------------hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCC
Q 022302          197 ---------------QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSY  261 (299)
Q Consensus       197 ---------------~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~  261 (299)
                                     ..+..+++|++|++++|  .+.+. +  .+..+++|++|++++|.+++...+..+++|++|++++
T Consensus       156 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~-~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  230 (347)
T 4fmz_A          156 GLNYLTVTESKVKDVTPIANLTDLYSLSLNYN--QIEDI-S--PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGN  230 (347)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCSEEECTTS--CCCCC-G--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCcEEEecCCCcCCchhhccCCCCCEEEccCC--ccccc-c--cccCCCccceeecccCCCCCCchhhcCCcCCEEEccC
Confidence                           01344444444444444  33221 1  1445555555555555555554566667777777777


Q ss_pred             CccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          262 NYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       262 N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      |.+++..+  +..+++|++|++++|++.+
T Consensus       231 n~l~~~~~--~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          231 NKITDLSP--LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CccCCCcc--hhcCCCCCEEECCCCccCC
Confidence            77764333  6677777777777777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.76  E-value=1.8e-17  Score=152.76  Aligned_cols=149  Identities=23%  Similarity=0.173  Sum_probs=85.8

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCC---------
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG---------  192 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---------  192 (299)
                      ++.+++|++|++++|.+++.       .+..+++|++|++++|++++. |  ++.+++|++|++++|++++         
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L  150 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNTQL  150 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCTTC
T ss_pred             cccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceeccccCCcC
Confidence            44455555555555555543       134455555555555555442 2  4445555555555555443         


Q ss_pred             ------------cchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCC
Q 022302          193 ------------SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLS  260 (299)
Q Consensus       193 ------------~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~  260 (299)
                                  .+   .+..+++|++|++++|  .+.+ ++   +..+++|+.|++++|++++. ++..+++|+.|+++
T Consensus       151 ~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n--~l~~-l~---l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls  220 (457)
T 3bz5_A          151 TELDCHLNKKITKL---DVTPQTQLTTLDCSFN--KITE-LD---VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCS  220 (457)
T ss_dssp             CEEECTTCSCCCCC---CCTTCTTCCEEECCSS--CCCC-CC---CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECC
T ss_pred             CEEECCCCCccccc---ccccCCcCCEEECCCC--ccce-ec---cccCCCCCEEECcCCcCCee-ccccCCCCCEEECc
Confidence                        22   1344555555555555  3333 22   45566666666666666665 46677778888888


Q ss_pred             CCccCccCcccccCCCCCCEEecCCCCCCCccC
Q 022302          261 YNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG  293 (299)
Q Consensus       261 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip  293 (299)
                      +|++++ +|  +..+++|++|++++|++++..+
T Consensus       221 ~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          221 SNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             SSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             CCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence            888876 55  7778888888888888876443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=2e-18  Score=152.46  Aligned_cols=161  Identities=24%  Similarity=0.290  Sum_probs=94.9

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCC-CCCcc-chHhhccCCCCcEEeCCCC-cCCCcchhh
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDS-ILPYLNTLTSLTTLILSDN-SIEGSRTKQ  197 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~p~~  197 (299)
                      .+..+++|++|++++|.+++..+.    .+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++...+.
T Consensus       113 ~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence            455666777777777766655554    5666677777777776 55542 4555666677777777776 665431222


Q ss_pred             hhcCCC-CCCEEECCCCcCCCC-CccchhhhccCCCCcEEECCCCC-CCC--cccccCCCCCCEEeCCCCc-cCccCccc
Q 022302          198 GLANLR-YLQVLDLSGNFNITS-GSLTRLGLANLTNLKKLDLGSCG-ITT--IQGLAKLKNLEALDLSYNY-YIHSSLEG  271 (299)
Q Consensus       198 ~~~~l~-~L~~L~Ls~n~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~-l~~--~~~l~~l~~L~~L~L~~N~-l~~~~p~~  271 (299)
                      .+..++ +|++|++++|...+. +.++ ..+..+++|++|++++|. +++  ...+..+++|++|++++|. ++......
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  267 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE  267 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence            456666 777777776622222 2333 455666777777777776 443  2235666777777777663 32222234


Q ss_pred             ccCCCCCCEEecCCC
Q 022302          272 LANLTNLQVLDLSDN  286 (299)
Q Consensus       272 l~~l~~L~~L~l~~N  286 (299)
                      +.++++|++|++++|
T Consensus       268 l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          268 LGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             HhcCCCCCEEeccCc
Confidence            556666666666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.76  E-value=2.4e-17  Score=152.04  Aligned_cols=153  Identities=26%  Similarity=0.210  Sum_probs=113.7

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  201 (299)
                      ++++++|++|++++|.+++.       .+..+++|++|++++|...+.+  .+..+++|++|++++|++++ +|   +..
T Consensus       123 ~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~  189 (457)
T 3bz5_A          123 VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQ  189 (457)
T ss_dssp             CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTT
T ss_pred             CCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec---ccc
Confidence            34444555555555555443       2445556666666666443333  36678899999999999986 44   788


Q ss_pred             CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCC-----
Q 022302          202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLT-----  276 (299)
Q Consensus       202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-----  276 (299)
                      +++|+.|++++|  .+.+.    .+..+++|++|++++|++++.+ +..+++|+.|++++|++++..+..+.++.     
T Consensus       190 l~~L~~L~l~~N--~l~~~----~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~  262 (457)
T 3bz5_A          190 NKLLNRLNCDTN--NITKL----DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI  262 (457)
T ss_dssp             CTTCCEEECCSS--CCSCC----CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred             CCCCCEEECcCC--cCCee----ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence            999999999999  66653    3788999999999999999975 89999999999999999987655555554     


Q ss_pred             --CCCEEecCCCCCCCccCC
Q 022302          277 --NLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       277 --~L~~L~l~~N~l~g~ip~  294 (299)
                        +|+.|++++|++.|.+|.
T Consensus       263 ~n~L~~L~l~~n~~~~~~~~  282 (457)
T 3bz5_A          263 QTDLLEIDLTHNTQLIYFQA  282 (457)
T ss_dssp             TCCCSCCCCTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCCcccc
Confidence              667788888888888774

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=2.3e-17  Score=137.43  Aligned_cols=152  Identities=20%  Similarity=0.171  Sum_probs=109.0

Q ss_pred             EEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch-HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEE
Q 022302          130 RLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL  208 (299)
Q Consensus       130 ~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L  208 (299)
                      ++++++|.++.+..     .+  .+.+++|++++|.+++..+ ..+..+++|++|++++|++++ +++..|..+++|++|
T Consensus        15 ~l~~s~n~l~~iP~-----~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L   86 (220)
T 2v70_A           15 TVDCSNQKLNKIPE-----HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEI   86 (220)
T ss_dssp             EEECCSSCCSSCCS-----CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEE
T ss_pred             EeEeCCCCcccCcc-----CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCEE
Confidence            56666666665422     22  2356788888888876544 346778888888888888774 444467788888888


Q ss_pred             ECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCC
Q 022302          209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN  286 (299)
Q Consensus       209 ~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N  286 (299)
                      ++++|  .+.+..+ ..+..+++|++|++++|++++.+  .+..+++|+.|+|++|++++..|..+..+++|++|++++|
T Consensus        87 ~Ls~N--~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           87 LLTSN--RLENVQH-KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             ECCSS--CCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             ECCCC--ccCccCH-hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            88888  6655544 56777888888888888887764  3777788888888888888777778888888888888888


Q ss_pred             CCCCcc
Q 022302          287 QNLTTL  292 (299)
Q Consensus       287 ~l~g~i  292 (299)
                      ++.+..
T Consensus       164 ~l~c~c  169 (220)
T 2v70_A          164 PFNCNC  169 (220)
T ss_dssp             CEECSG
T ss_pred             CCcCCC
Confidence            876543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=2.3e-18  Score=152.11  Aligned_cols=160  Identities=21%  Similarity=0.205  Sum_probs=132.9

Q ss_pred             cCCCCCccEEeCCCCCCCCc-chhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCC-cCCCcchhhhh
Q 022302          122 FHPFEELQRLDLPGNWFTGI-YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN-SIEGSRTKQGL  199 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~  199 (299)
                      +.++++|++|++++|.+++. .+.    .+..+++|++|++++|.+++..+..++.+++|++|++++| .+++...+..+
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~  164 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL  164 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence            55789999999999998765 554    7889999999999999999888999999999999999999 67753223368


Q ss_pred             cCCCCCCEEECCCC-cCCCCCccchhhhccCC-CCcEEECCCC--CCCC--cc-cccCCCCCCEEeCCCCc-cCccCccc
Q 022302          200 ANLRYLQVLDLSGN-FNITSGSLTRLGLANLT-NLKKLDLGSC--GITT--IQ-GLAKLKNLEALDLSYNY-YIHSSLEG  271 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n-~~~~~~~~~~~~~~~l~-~L~~L~Ls~n--~l~~--~~-~l~~l~~L~~L~L~~N~-l~~~~p~~  271 (299)
                      ..+++|++|++++| .+.. ..++ ..+..++ +|++|++++|  .+++  .+ .+..+++|++|++++|. +++..+..
T Consensus       165 ~~~~~L~~L~l~~~~~l~~-~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDFTE-KHVQ-VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             HHCTTCCEEECCCCTTCCH-HHHH-HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             hcCCCCCEEcCCCCCCcCh-HHHH-HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence            88999999999998 3221 1134 5678899 9999999999  4542  22 36789999999999999 78788889


Q ss_pred             ccCCCCCCEEecCCCC
Q 022302          272 LANLTNLQVLDLSDNQ  287 (299)
Q Consensus       272 l~~l~~L~~L~l~~N~  287 (299)
                      +..+++|++|++++|.
T Consensus       243 l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          243 FFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             GGGCTTCCEEECTTCT
T ss_pred             HhCCCCCCEeeCCCCC
Confidence            9999999999999995

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.75  E-value=4e-19  Score=160.23  Aligned_cols=192  Identities=21%  Similarity=0.256  Sum_probs=139.4

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCC---------CCCCEEEC
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSL---------KQLKMLNL  161 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l---------~~L~~L~L  161 (299)
                      .+++.+++++ .+.+.       .....+..+.++++|++|++++|.++...+..+...+..+         ++|++|++
T Consensus        94 ~~L~~L~Ls~n~l~~~-------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPT-------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             TTCCEEECCSCCCCTT-------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             CcccEEECCCCcCCHH-------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence            4567777776 43320       0001233567788888888888888765554444445555         88999999


Q ss_pred             CCCCCC-ccch---HhhccCCCCcEEeCCCCcCCCc----chhhhhcCCCCCCEEECCCCcCCCC----CccchhhhccC
Q 022302          162 GDNFFN-DSIL---PYLNTLTSLTTLILSDNSIEGS----RTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGLANL  229 (299)
Q Consensus       162 s~n~l~-~~~p---~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~~~~l  229 (299)
                      ++|+++ +.++   ..+..+++|++|++++|+++..    +.+..+..+++|++|++++|  .+.    +.++ ..+..+
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~-~~l~~~  243 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALA-IALKSW  243 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHH-HHGGGC
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHH-HHHccC
Confidence            999887 3444   4667788999999999988732    12225778899999999999  654    4455 577888


Q ss_pred             CCCcEEECCCCCCCCcc------cc--cCCCCCCEEeCCCCccCc----cCcccc-cCCCCCCEEecCCCCCCCccC
Q 022302          230 TNLKKLDLGSCGITTIQ------GL--AKLKNLEALDLSYNYYIH----SSLEGL-ANLTNLQVLDLSDNQNLTTLG  293 (299)
Q Consensus       230 ~~L~~L~Ls~n~l~~~~------~l--~~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~g~ip  293 (299)
                      ++|++|++++|.+++..      .+  +.+++|+.|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            99999999999988651      24  448899999999999997    478777 668999999999999987653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=2.5e-18  Score=153.19  Aligned_cols=198  Identities=20%  Similarity=0.240  Sum_probs=144.9

Q ss_pred             CCCCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHH
Q 022302           79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD  148 (299)
Q Consensus        79 c~~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  148 (299)
                      | .|..|.|...         ...++.|+|++ +++.           ++...|+++++|++|+|++|.+.+.++.   .
T Consensus         9 C-~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-----------i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---~   73 (350)
T 4ay9_X            9 C-SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----------IQKGAFSGFGDLEKIEISQNDVLEVIEA---D   73 (350)
T ss_dssp             E-ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-----------ECTTSSTTCTTCCEEEEECCTTCCEECT---T
T ss_pred             e-eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-----------cCHHHHcCCCCCCEEECcCCCCCCccCh---h
Confidence            5 8999999742         12456677766 4433           5566789999999999999998776653   1


Q ss_pred             hhcCCCCCCE-EECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhc
Q 022302          149 SFGSLKQLKM-LNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLA  227 (299)
Q Consensus       149 ~l~~l~~L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~  227 (299)
                      .|.+++++++ +.++.|+++...|..+..+++|++|++++|++.. ++...+....++..+++.++  .....++...+.
T Consensus        74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~--~~i~~l~~~~f~  150 (350)
T 4ay9_X           74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDN--INIHTIERNSFV  150 (350)
T ss_dssp             SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESC--TTCCEECTTSST
T ss_pred             HhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccc--cccccccccchh
Confidence            6788888775 5667789988778889999999999999999985 44445666677888888765  444455545555


Q ss_pred             cCC-CCcEEECCCCCCCCccc-ccCCCCCCEEeCCC-CccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302          228 NLT-NLKKLDLGSCGITTIQG-LAKLKNLEALDLSY-NYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       228 ~l~-~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~  295 (299)
                      .+. .++.|++++|+++.++. .....+|+++++.+ |.++...++.|..+++|++|++++|+++. +|..
T Consensus       151 ~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~  220 (350)
T 4ay9_X          151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY  220 (350)
T ss_dssp             TSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS
T ss_pred             hcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh
Confidence            554 68889999999887654 44567788888875 55653333567888899999999998874 5553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.4e-17  Score=158.34  Aligned_cols=153  Identities=30%  Similarity=0.337  Sum_probs=135.6

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  201 (299)
                      +..+++|+.|++++|.+... +     .+..+++|+.|+|++|.+++..+  +..+++|++|+|++|.+.+ ++  .+..
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l-~-----~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~--~l~~  107 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV-Q-----GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS--SLKD  107 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC-T-----TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT--TSTT
T ss_pred             hhcCCCCCEEECcCCCCCCC-h-----HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch--hhcc
Confidence            45678899999999999876 3     57889999999999999997655  8999999999999999985 44  5899


Q ss_pred             CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302          202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL  281 (299)
Q Consensus       202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  281 (299)
                      +++|++|+|++|  .+.+.   ..+..+++|+.|+|++|.+++...+..+++|+.|+|++|.+++..|  +..+++|+.|
T Consensus       108 l~~L~~L~Ls~N--~l~~l---~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L  180 (605)
T 1m9s_A          108 LKKLKSLSLEHN--GISDI---NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL  180 (605)
T ss_dssp             CTTCCEEECTTS--CCCCC---GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             CCCCCEEEecCC--CCCCC---ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence            999999999999  66553   3588999999999999999999889999999999999999997666  9999999999


Q ss_pred             ecCCCCCCCccC
Q 022302          282 DLSDNQNLTTLG  293 (299)
Q Consensus       282 ~l~~N~l~g~ip  293 (299)
                      +|++|++.+ +|
T Consensus       181 ~Ls~N~i~~-l~  191 (605)
T 1m9s_A          181 YLSKNHISD-LR  191 (605)
T ss_dssp             ECCSSCCCB-CG
T ss_pred             ECcCCCCCC-Ch
Confidence            999999986 44

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=5.9e-18  Score=134.81  Aligned_cols=137  Identities=25%  Similarity=0.230  Sum_probs=107.6

Q ss_pred             CCCCCCEEECCCCCCC-ccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCC
Q 022302          152 SLKQLKMLNLGDNFFN-DSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT  230 (299)
Q Consensus       152 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~  230 (299)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+++.   ..+..+++|++|++++|  .+.+.+| ..+..++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N--~l~~~~~-~~~~~l~   95 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSEN--RIFGGLD-MLAEKLP   95 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESC--CCCSCCC-HHHHHCT
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCC--cCchHHH-HHHhhCC
Confidence            4467888888888876 56777777788888888888888753   36788888888888888  6666556 6667788


Q ss_pred             CCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCc---ccccCCCCCCEEecCCCCCCCccCCC
Q 022302          231 NLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSL---EGLANLTNLQVLDLSDNQNLTTLGKP  295 (299)
Q Consensus       231 ~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~l~~N~l~g~ip~~  295 (299)
                      +|++|++++|.+++.+   .+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+. ++|++
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            8888888888888753   47788899999999999986544   47889999999999999886 46654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.4e-17  Score=149.05  Aligned_cols=153  Identities=24%  Similarity=0.262  Sum_probs=125.9

Q ss_pred             cEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhc-cCCCCcEEeCCCCcCCCcchhhhhcCCCCCCE
Q 022302          129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN-TLTSLTTLILSDNSIEGSRTKQGLANLRYLQV  207 (299)
Q Consensus       129 ~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~  207 (299)
                      +.++++++.++....     .+  .+.++.|+|++|.+++..+..+. .+++|++|+|++|++++ +++..|..+++|++
T Consensus        21 ~~l~c~~~~l~~iP~-----~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~   92 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-----SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRY   92 (361)
T ss_dssp             TEEECCSSCCSSCCS-----SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred             CEEEeCCCCcCccCc-----cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCE
Confidence            457777777776533     22  34689999999999987777787 89999999999999985 55557999999999


Q ss_pred             EECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccc---cCCCCCCEEe
Q 022302          208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGL---ANLTNLQVLD  282 (299)
Q Consensus       208 L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~  282 (299)
                      |+|++|  .+.+..+ ..+..+++|++|+|++|+++...  .+..+++|+.|+|++|.+++..+..+   ..+++|+.|+
T Consensus        93 L~Ls~N--~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~  169 (361)
T 2xot_A           93 LDLSSN--HLHTLDE-FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD  169 (361)
T ss_dssp             EECCSS--CCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred             EECCCC--cCCcCCH-HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence            999999  6665444 67899999999999999999874  48899999999999999996444445   5799999999


Q ss_pred             cCCCCCCCccC
Q 022302          283 LSDNQNLTTLG  293 (299)
Q Consensus       283 l~~N~l~g~ip  293 (299)
                      |++|+|.+ +|
T Consensus       170 L~~N~l~~-l~  179 (361)
T 2xot_A          170 LSSNKLKK-LP  179 (361)
T ss_dssp             CCSSCCCC-CC
T ss_pred             CCCCCCCc-cC
Confidence            99999985 44

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=1.9e-17  Score=134.97  Aligned_cols=130  Identities=22%  Similarity=0.234  Sum_probs=88.9

Q ss_pred             cEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchH-hhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCE
Q 022302          129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV  207 (299)
Q Consensus       129 ~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~  207 (299)
                      +++++++|.++.+..     .+.  .+|++|++++|.+++..+. .++.+++|++|++++|++++..|. .|..+++|++
T Consensus        11 ~~l~~s~~~l~~ip~-----~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~   82 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-----DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSCCS-----CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCE
T ss_pred             CEEEcCCCCcCcCcc-----CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCE
Confidence            678888887755432     222  3778888888887765543 377778888888888888764443 6777778888


Q ss_pred             EECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCc
Q 022302          208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSL  269 (299)
Q Consensus       208 L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p  269 (299)
                      |++++|  .+.+..+ ..+..+++|++|++++|++++..  .+..+++|++|++++|.+++..+
T Consensus        83 L~Ls~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           83 LQLGEN--KIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EECCSC--CCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             EECCCC--cCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            888877  6655544 55667777777777777776653  26666777777777777765544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=4.1e-18  Score=153.62  Aligned_cols=166  Identities=24%  Similarity=0.258  Sum_probs=90.1

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhc----cC---------CCCcEEeCCCCc
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN----TL---------TSLTTLILSDNS  189 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~  189 (299)
                      ..+++|++|++++|.+.+.....+...+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            45566666666666665532222222555566666666666666433333222    22         566666666666


Q ss_pred             CC-Ccchh--hhhcCCCCCCEEECCCCcCCCC--Cc--cchhhhccCCCCcEEECCCCCCCC-----cc-cccCCCCCCE
Q 022302          190 IE-GSRTK--QGLANLRYLQVLDLSGNFNITS--GS--LTRLGLANLTNLKKLDLGSCGITT-----IQ-GLAKLKNLEA  256 (299)
Q Consensus       190 l~-~~~p~--~~~~~l~~L~~L~Ls~n~~~~~--~~--~~~~~~~~l~~L~~L~Ls~n~l~~-----~~-~l~~l~~L~~  256 (299)
                      ++ +.++.  ..+..+++|++|++++|  .+.  |.  +.+..+..+++|++|++++|.++.     .+ .+..+++|++
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQN--GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSS--CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCC--CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            65 22221  23455666666666666  333  20  111245566666666666666642     11 2556666777


Q ss_pred             EeCCCCccCcc----Cccccc--CCCCCCEEecCCCCCCC
Q 022302          257 LDLSYNYYIHS----SLEGLA--NLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       257 L~L~~N~l~~~----~p~~l~--~l~~L~~L~l~~N~l~g  290 (299)
                      |+|++|.+++.    ++..+.  .+++|++|++++|++++
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            77777766654    445552  36667777777776665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=2.2e-17  Score=128.82  Aligned_cols=127  Identities=27%  Similarity=0.269  Sum_probs=81.2

Q ss_pred             CCCCCEEECCCCCCC-ccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCC
Q 022302          153 LKQLKMLNLGDNFFN-DSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN  231 (299)
Q Consensus       153 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~  231 (299)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.   ..+..+++|++|++++|  .+.+.+| ..+..+++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n--~i~~~~~-~~~~~l~~   89 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN--RVSGGLE-VLAEKCPN   89 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS--CCCSCTH-HHHHHCTT
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC--cccchHH-HHhhhCCC
Confidence            345666666666665 45555556666666666666666543   24666666666666666  5555444 45555667


Q ss_pred             CcEEECCCCCCCCc---ccccCCCCCCEEeCCCCccCccCc---ccccCCCCCCEEecCC
Q 022302          232 LKKLDLGSCGITTI---QGLAKLKNLEALDLSYNYYIHSSL---EGLANLTNLQVLDLSD  285 (299)
Q Consensus       232 L~~L~Ls~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~l~~  285 (299)
                      |++|++++|.+++.   ..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            77777777776664   236677777777777777775544   4677788888887753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.72  E-value=7.7e-18  Score=150.64  Aligned_cols=187  Identities=21%  Similarity=0.206  Sum_probs=139.6

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccc----cccCCCC-CccEEeCCCCCCCCcchhhhHHhhcCC-CCCCEEECCCC
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNM----SLFHPFE-ELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDN  164 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n  164 (299)
                      ..++.+++++ .+.+           ...    ..+.+++ +|++|++++|.+++..+..+...+... ++|++|++++|
T Consensus        22 ~~L~~L~Ls~n~l~~-----------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n   90 (362)
T 3goz_A           22 HGVTSLDLSLNNLYS-----------ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN   90 (362)
T ss_dssp             TTCCEEECTTSCGGG-----------SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred             CCceEEEccCCCCCh-----------HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence            4588999988 5544           122    4577788 899999999999988777555555554 99999999999


Q ss_pred             CCCccchHhhcc----C-CCCcEEeCCCCcCCCcchhh---hhcC-CCCCCEEECCCCcCCCCC----ccchhhhccCC-
Q 022302          165 FFNDSILPYLNT----L-TSLTTLILSDNSIEGSRTKQ---GLAN-LRYLQVLDLSGNFNITSG----SLTRLGLANLT-  230 (299)
Q Consensus       165 ~l~~~~p~~l~~----l-~~L~~L~L~~n~l~~~~p~~---~~~~-l~~L~~L~Ls~n~~~~~~----~~~~~~~~~l~-  230 (299)
                      .+++..+..+..    + ++|++|++++|++++..+..   .+.. .++|++|++++|  .+.+    .++ ..+...+ 
T Consensus        91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~~~~~~~l~-~~l~~~~~  167 (362)
T 3goz_A           91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN--DLGIKSSDELI-QILAAIPA  167 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS--CGGGSCHHHHH-HHHHTSCT
T ss_pred             cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC--cCCHHHHHHHH-HHHhcCCc
Confidence            998877775544    4 89999999999998644331   2334 369999999999  5543    222 3445555 


Q ss_pred             CCcEEECCCCCCCCcc------cccCC-CCCCEEeCCCCccCcc----CcccccC-CCCCCEEecCCCCCCCcc
Q 022302          231 NLKKLDLGSCGITTIQ------GLAKL-KNLEALDLSYNYYIHS----SLEGLAN-LTNLQVLDLSDNQNLTTL  292 (299)
Q Consensus       231 ~L~~L~Ls~n~l~~~~------~l~~l-~~L~~L~L~~N~l~~~----~p~~l~~-l~~L~~L~l~~N~l~g~i  292 (299)
                      +|++|++++|++++..      .+..+ ++|++|+|++|.+++.    +++.+.. .++|++|++++|++.+.-
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            9999999999997654      24455 5999999999999864    4555555 469999999999997643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=2.8e-17  Score=130.85  Aligned_cols=137  Identities=27%  Similarity=0.215  Sum_probs=114.2

Q ss_pred             CCCCccEEeCCCCCCC-CcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302          124 PFEELQRLDLPGNWFT-GIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (299)
Q Consensus       124 ~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  202 (299)
                      ..++|++|++++|.++ +.+|.    .+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|. .+..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l   94 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEG----LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL   94 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSS----CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred             CcccCCEEECCCCCCChhhHHH----HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence            3478999999999998 56665    678899999999999999875  7788999999999999999976664 67779


Q ss_pred             CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-----ccCCCCCCEEeCCCCccCccCcc
Q 022302          203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-----LAKLKNLEALDLSYNYYIHSSLE  270 (299)
Q Consensus       203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----l~~l~~L~~L~L~~N~l~~~~p~  270 (299)
                      ++|++|++++|  .+.+......+..+++|++|++++|.+++.+.     +..+++|++|++++|.+. .+|+
T Consensus        95 ~~L~~L~Ls~N--~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A           95 PNLTHLNLSGN--KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             TTCCEEECBSS--SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CCCCEEeccCC--ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            99999999999  66653221568889999999999999988754     778999999999999887 4554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.71  E-value=1.7e-17  Score=148.35  Aligned_cols=185  Identities=22%  Similarity=0.250  Sum_probs=137.2

Q ss_pred             cEEEeeeCc-cccccccCCCCccccccccccCC----C-CCccEEeCCCCCCCCcchhhhHHhhcCC-CCCCEEECCCCC
Q 022302           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHP----F-EELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNF  165 (299)
Q Consensus        93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~----l-~~L~~L~L~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~  165 (299)
                      +++.+++++ .+.+.           .+..+..    . ++|++|++++|.+++..+..+...+..+ ++|++|++++|.
T Consensus        52 ~L~~L~Ls~N~l~~~-----------~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           52 SVTSLNLSGNSLGFK-----------NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             TCCEEECCSSCGGGS-----------CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             ceeEEECcCCCCCHH-----------HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence            788999988 55441           1222333    2 8999999999999988887666667777 899999999999


Q ss_pred             CCccchHhhcc-----CCCCcEEeCCCCcCCCcchh---hhhcCCC-CCCEEECCCCcCCCCCccch---hhhccC-CCC
Q 022302          166 FNDSILPYLNT-----LTSLTTLILSDNSIEGSRTK---QGLANLR-YLQVLDLSGNFNITSGSLTR---LGLANL-TNL  232 (299)
Q Consensus       166 l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~---~~~~~l~-~L~~L~Ls~n~~~~~~~~~~---~~~~~l-~~L  232 (299)
                      +++..+..+..     .++|++|++++|.+++....   ..+..++ +|++|++++|  .+.+..+.   ..+..+ ++|
T Consensus       121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L  198 (362)
T 3goz_A          121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN--NLASKNCAELAKFLASIPASV  198 (362)
T ss_dssp             GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHHTSCTTC
T ss_pred             CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC--CCchhhHHHHHHHHHhCCCCC
Confidence            98877765543     36999999999999853322   1345565 9999999999  55544331   234455 599


Q ss_pred             cEEECCCCCCCCcc------cccC-CCCCCEEeCCCCccCccCc----ccccCCCCCCEEecCCCCCCC
Q 022302          233 KKLDLGSCGITTIQ------GLAK-LKNLEALDLSYNYYIHSSL----EGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       233 ~~L~Ls~n~l~~~~------~l~~-l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      ++|++++|.+++..      .+.. .++|++|+|++|.+++..+    ..+..+++|++|++++|++.+
T Consensus       199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~  267 (362)
T 3goz_A          199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN  267 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred             CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc
Confidence            99999999988732      2444 4699999999999987655    345678999999999998543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=5.5e-17  Score=126.52  Aligned_cols=128  Identities=28%  Similarity=0.281  Sum_probs=103.1

Q ss_pred             CCCccEEeCCCCCCC-CcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCC
Q 022302          125 FEELQRLDLPGNWFT-GIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR  203 (299)
Q Consensus       125 l~~L~~L~L~~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  203 (299)
                      .++|++|++++|.++ +.+|.    .+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|. .+..++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~   88 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCP   88 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCT
T ss_pred             CccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCC
Confidence            467889999999888 56665    678889999999999998865  6788889999999999999876664 677789


Q ss_pred             CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-----ccCCCCCCEEeCCC
Q 022302          204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-----LAKLKNLEALDLSY  261 (299)
Q Consensus       204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----l~~l~~L~~L~L~~  261 (299)
                      +|++|++++|  .+.+......+..+++|++|++++|.+++.+.     +..+++|+.|++++
T Consensus        89 ~L~~L~ls~N--~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           89 NLTHLNLSGN--KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TCCEEECTTS--CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCEEECCCC--cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999999  66653211567888999999999998887654     77888999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1e-18  Score=165.12  Aligned_cols=160  Identities=24%  Similarity=0.238  Sum_probs=132.2

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-------------CCccchHhhccC------------
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-------------FNDSILPYLNTL------------  177 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l------------  177 (299)
                      ..+++|+.|+|++|.+.. +|.    .++.+++|+.|++++|.             +.+..|..++.+            
T Consensus       346 ~~~~~L~~L~Ls~n~L~~-Lp~----~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n  420 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV-LQS----ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  420 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH-HHH----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             ccCccceeccCChhhHHh-hHH----HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence            567888889999888864 454    77778888888876664             344444332211            


Q ss_pred             --------------------CCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEEC
Q 022302          178 --------------------TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL  237 (299)
Q Consensus       178 --------------------~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~L  237 (299)
                                          ..|++|++++|.+++ +|.  +..+++|+.|++++|  .+. .+| ..++.+++|+.|+|
T Consensus       421 ~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N--~l~-~lp-~~~~~l~~L~~L~L  493 (567)
T 1dce_A          421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHN--RLR-ALP-PALAALRCLEVLQA  493 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC--GGGGTTCCEEECCSS--CCC-CCC-GGGGGCTTCCEEEC
T ss_pred             ccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC--ccccccCcEeecCcc--ccc-ccc-hhhhcCCCCCEEEC
Confidence                                257899999999986 663  899999999999999  666 677 68999999999999


Q ss_pred             CCCCCCCcccccCCCCCCEEeCCCCccCccC-cccccCCCCCCEEecCCCCCCCccCC
Q 022302          238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSS-LEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       238 s~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      ++|++++.+.+..+++|+.|+|++|.+++.. |+.++.+++|+.|++++|++++..|.
T Consensus       494 s~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          494 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            9999999888999999999999999999876 99999999999999999999986654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=5.8e-17  Score=138.69  Aligned_cols=149  Identities=26%  Similarity=0.306  Sum_probs=127.7

Q ss_pred             CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCC
Q 022302          124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR  203 (299)
Q Consensus       124 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  203 (299)
                      .+.+++.+++++|.+++..      .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++ +++  +..++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~------~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~--l~~l~   85 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV------SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP--LKDLT   85 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE------CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCS
T ss_pred             HHHHHHHHHhcCCCccccc------chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh--hccCC
Confidence            4566788899999998764      35678999999999999985 45 68899999999999999996 554  89999


Q ss_pred             CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302          204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL  283 (299)
Q Consensus       204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  283 (299)
                      +|++|++++|  .+.+ ++  .+.. ++|++|++++|++++.+.+..+++|+.|++++|++++. + .+..+++|++|++
T Consensus        86 ~L~~L~L~~N--~l~~-l~--~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           86 KLEELSVNRN--RLKN-LN--GIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL  157 (263)
T ss_dssp             SCCEEECCSS--CCSC-CT--TCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred             CCCEEECCCC--ccCC-cC--cccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence            9999999999  6654 33  1233 89999999999999988899999999999999999964 4 6899999999999


Q ss_pred             CCCCCCCc
Q 022302          284 SDNQNLTT  291 (299)
Q Consensus       284 ~~N~l~g~  291 (299)
                      ++|++.+.
T Consensus       158 ~~N~i~~~  165 (263)
T 1xeu_A          158 HGNEITNT  165 (263)
T ss_dssp             TTSCCCBC
T ss_pred             CCCcCcch
Confidence            99999875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.69  E-value=1.5e-16  Score=146.45  Aligned_cols=154  Identities=23%  Similarity=0.275  Sum_probs=84.8

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCC--cchhh--
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG--SRTKQ--  197 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~--  197 (299)
                      ++.+++|++|++++|.+++...        .+++|++|++++|++++ +|..   .++|++|++++|++++  .+|..  
T Consensus       233 ~~~l~~L~~L~l~~N~l~~l~~--------~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~  300 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKTLPD--------LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLY  300 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSCCS--------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCC
T ss_pred             cCCCCCCCEEECCCCcCCcccc--------cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCC
Confidence            6677777778887777776422        13566677777666664 3322   2556666666666654  11110  


Q ss_pred             ----------hhcCC-CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCc
Q 022302          198 ----------GLANL-RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH  266 (299)
Q Consensus       198 ----------~~~~l-~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~  266 (299)
                                .+..+ ++|++|++++|  .+.+ +| .   .+++|++|++++|+++..+.  .+++|++|++++|++++
T Consensus       301 ~L~l~~N~l~~i~~~~~~L~~L~Ls~N--~l~~-lp-~---~~~~L~~L~L~~N~l~~lp~--~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          301 YLNASSNEIRSLCDLPPSLEELNVSNN--KLIE-LP-A---LPPRLERLIASFNHLAEVPE--LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             EEECCSSCCSEECCCCTTCCEEECCSS--CCSC-CC-C---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS
T ss_pred             EEECcCCcCCcccCCcCcCCEEECCCC--cccc-cc-c---cCCcCCEEECCCCccccccc--hhhhccEEECCCCCCCc
Confidence                      01122 46777777777  5544 44 2   25778888888888887665  56788888888888888


Q ss_pred             --cCcccccCC-------------CCCCEEecCCCCCCC--ccCCCc
Q 022302          267 --SSLEGLANL-------------TNLQVLDLSDNQNLT--TLGKPL  296 (299)
Q Consensus       267 --~~p~~l~~l-------------~~L~~L~l~~N~l~g--~ip~~~  296 (299)
                        .+|..+..+             ++|++|++++|+++|  .+|+++
T Consensus       372 l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl  418 (454)
T 1jl5_A          372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV  418 (454)
T ss_dssp             CCCCCTTCCEEECCC--------------------------------
T ss_pred             CCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence              678777766             788888999888887  788765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=5.1e-16  Score=126.46  Aligned_cols=152  Identities=22%  Similarity=0.201  Sum_probs=115.0

Q ss_pred             CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (299)
Q Consensus       127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  206 (299)
                      ++++|++++|.+.+..+..   .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ +++..+..+++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~  105 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLK  105 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTCC
T ss_pred             CCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc-cCHHHhcCCCCCC
Confidence            8999999999999887630   37899999999999999999889999999999999999999996 4444789999999


Q ss_pred             EEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCC-CCCEEeCCCCccCccCcccccCCCCCCEEecCC
Q 022302          207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLK-NLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD  285 (299)
Q Consensus       207 ~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~  285 (299)
                      +|++++|  .+.+..| ..+..+++|++|++++|.++....+..+. .++...+..+......|..+..   ....++..
T Consensus       106 ~L~L~~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~---~~l~~l~~  179 (192)
T 1w8a_A          106 TLNLYDN--QISCVMP-GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPH  179 (192)
T ss_dssp             EEECCSS--CCCEECT-TSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTT---SBGGGSCT
T ss_pred             EEECCCC--cCCeeCH-HHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcC---CChhhCcH
Confidence            9999999  8887777 78899999999999999998754321111 1222233344444445554433   33344555


Q ss_pred             CCC
Q 022302          286 NQN  288 (299)
Q Consensus       286 N~l  288 (299)
                      +.+
T Consensus       180 ~~~  182 (192)
T 1w8a_A          180 SEF  182 (192)
T ss_dssp             TTC
T ss_pred             hhc
Confidence            554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.67  E-value=3.4e-16  Score=149.10  Aligned_cols=83  Identities=22%  Similarity=0.167  Sum_probs=64.4

Q ss_pred             CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEe
Q 022302          203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLD  282 (299)
Q Consensus       203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  282 (299)
                      ++|+.|++++|  .+.+ +|    ..+++|++|++++|+++..+.  .+++|+.|+|++|+++ .+|+.+.++++|+.|+
T Consensus       221 ~~L~~L~Ls~N--~L~~-lp----~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          221 SGLKELIVSGN--RLTS-LP----VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             TTCCEEECCSS--CCSC-CC----CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             CCCCEEEccCC--ccCc-CC----CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence            55666677766  4443 33    345778888888888877665  6788999999999999 7888899999999999


Q ss_pred             cCCCCCCCccCCC
Q 022302          283 LSDNQNLTTLGKP  295 (299)
Q Consensus       283 l~~N~l~g~ip~~  295 (299)
                      +++|++++.+|..
T Consensus       291 L~~N~l~~~~~~~  303 (622)
T 3g06_A          291 LEGNPLSERTLQA  303 (622)
T ss_dssp             CCSCCCCHHHHHH
T ss_pred             ecCCCCCCcCHHH
Confidence            9999998877653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.67  E-value=1.6e-15  Score=139.63  Aligned_cols=142  Identities=23%  Similarity=0.258  Sum_probs=65.8

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.+++ +|     .+..+++|++|++++|++++ +|..   .++|++|++++|++++ +|  .+..+++|
T Consensus       131 ~~L~~L~L~~n~l~~-lp-----~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L  197 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-----ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFL  197 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTC
T ss_pred             CCCCEEECcCCCCCC-Cc-----ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCC
Confidence            345555555555554 22     34555555555555555543 2221   1345555555555543 33  24445555


Q ss_pred             CEEECCCCcCCCCC-------------------ccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCc
Q 022302          206 QVLDLSGNFNITSG-------------------SLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH  266 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~  266 (299)
                      ++|++++|  .+.+                   .+|  .+..+++|++|++++|++++.+.  .+++|+.|++++|++++
T Consensus       198 ~~L~l~~N--~l~~l~~~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          198 TAIYADNN--SLKKLPDLPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CEEECCSS--CCSSCCCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSC
T ss_pred             CEEECCCC--cCCcCCCCcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcccc
Confidence            55555554  3322                   222  13444444555555444444332  12445555555555443


Q ss_pred             cCcccccCCCCCCEEecCCCCCCC
Q 022302          267 SSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       267 ~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                       +|+.   .++|++|++++|++++
T Consensus       272 -l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          272 -LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             -CCCC---CTTCCEEECCSSCCSE
T ss_pred             -cCcc---cCcCCEEECcCCccCc
Confidence             3322   2455666666666555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.67  E-value=1e-15  Score=144.28  Aligned_cols=140  Identities=20%  Similarity=0.204  Sum_probs=109.7

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.++.+ |       ..+++|++|++++|.+++ +|. +..  +|++|++++|++++ +|.    .+++|
T Consensus        80 ~~L~~L~Ls~N~l~~i-p-------~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L  142 (571)
T 3cvr_A           80 PQITVLEITQNALISL-P-------ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALL  142 (571)
T ss_dssp             TTCSEEECCSSCCSCC-C-------CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTC
T ss_pred             CCCCEEECcCCCCccc-c-------cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccc
Confidence            6799999999988854 3       346889999999999987 565 554  89999999999886 664    67889


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCC-------
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNL-------  278 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-------  278 (299)
                      ++|++++|  .+.+ +| .   .+++|++|++++|++++.+.+.  ++|+.|+|++|.++ .+|. +..  +|       
T Consensus       143 ~~L~Ls~N--~l~~-lp-~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L  209 (571)
T 3cvr_A          143 EYINADNN--QLTM-LP-E---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETE  209 (571)
T ss_dssp             CEEECCSS--CCSC-CC-C---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS-SCCC-CC----------CC
T ss_pred             cEEeCCCC--ccCc-CC-C---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccc
Confidence            99999999  6655 55 2   5788999999999998877644  88999999999998 6776 554  67       


Q ss_pred             CEEecCCCCCCCccCCCc
Q 022302          279 QVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       279 ~~L~l~~N~l~g~ip~~~  296 (299)
                      +.|++++|+|+ .||+.+
T Consensus       210 ~~L~Ls~N~l~-~lp~~l  226 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENI  226 (571)
T ss_dssp             EEEECCSSCCC-CCCGGG
T ss_pred             eEEecCCCcce-ecCHHH
Confidence            99999999997 477643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.66  E-value=1.3e-15  Score=122.17  Aligned_cols=131  Identities=22%  Similarity=0.197  Sum_probs=91.7

Q ss_pred             ccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCE
Q 022302          128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV  207 (299)
Q Consensus       128 L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~  207 (299)
                      .+.++++++.++....     .  -.++|++|++++|++++..+..+..+++|++|++++|++++ ++...+..+++|++
T Consensus         9 ~~~l~~~~~~l~~~p~-----~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-----G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTI   80 (177)
T ss_dssp             TTEEECCSSCCSSCCT-----T--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             CCEEEecCCCCccCCC-----C--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCE
Confidence            4678888887776543     2  23678888888888876666667778888888888888774 45445677788888


Q ss_pred             EECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCc
Q 022302          208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSL  269 (299)
Q Consensus       208 L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p  269 (299)
                      |++++|  .+.+..+ ..+..+++|++|++++|++++.+.  +..+++|++|++++|.+++..|
T Consensus        81 L~l~~N--~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           81 LYLHEN--KLQSLPN-GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             EECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EECCCC--CccccCH-HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            888887  5554433 456677777777777777776654  4566777777777777776544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=1.1e-16  Score=155.49  Aligned_cols=158  Identities=22%  Similarity=0.148  Sum_probs=103.6

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCE-----EECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKM-----LNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~-----L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  200 (299)
                      +.++.|+|.+|.+.....     .+....+|+.     ++++.|.+. ..+..+..+++|++|+|++|.+. .+|. .+.
T Consensus       173 ~~~~~l~L~~n~~~~~~~-----~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQ-----ALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISA-NIF  244 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGG
T ss_pred             CccceEEeeCCCCCcchh-----hHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCCh-hhc
Confidence            567889998888877533     2222222322     233334443 45778889999999999999998 5776 567


Q ss_pred             CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCC
Q 022302          201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ  279 (299)
Q Consensus       201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  279 (299)
                      .+++|++|+|++|  .+. .+| ..+..+++|++|+|++|+++.++. +..+++|++|+|++|.++ .+|..|+.+++|+
T Consensus       245 ~l~~L~~L~Ls~N--~l~-~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~  319 (727)
T 4b8c_D          245 KYDFLTRLYLNGN--SLT-ELP-AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ  319 (727)
T ss_dssp             GCCSCSCCBCTTS--CCS-CCC-GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCC
T ss_pred             CCCCCCEEEeeCC--cCc-ccC-hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCcc
Confidence            9999999999999  666 677 778999999999999999997754 889999999999999998 7898999999999


Q ss_pred             EEecCCCCCCCccCCCc
Q 022302          280 VLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       280 ~L~l~~N~l~g~ip~~~  296 (299)
                      +|+|++|+++|.+|+.+
T Consensus       320 ~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          320 FLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CEECTTSCCCSHHHHHH
T ss_pred             EEeCCCCccCCCChHHH
Confidence            99999999999888754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.65  E-value=4.5e-17  Score=149.79  Aligned_cols=167  Identities=19%  Similarity=0.095  Sum_probs=119.7

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhh-cCCCCCCEEECCCCCCCcc----chHhhccCCCCcEEeCCCCcCCCcch
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSF-GSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGSRT  195 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p  195 (299)
                      .+..+++|++|++++|.+.+.....+...+ ..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+
T Consensus       222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence            345667788888888877654332222222 3577888888888888754    56667778888888888888764322


Q ss_pred             hhhhc-----CCCCCCEEECCCCcCCCCCc----cchhhhccCCCCcEEECCCCCCCCcc--c----cc-CCCCCCEEeC
Q 022302          196 KQGLA-----NLRYLQVLDLSGNFNITSGS----LTRLGLANLTNLKKLDLGSCGITTIQ--G----LA-KLKNLEALDL  259 (299)
Q Consensus       196 ~~~~~-----~l~~L~~L~Ls~n~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~--~----l~-~l~~L~~L~L  259 (299)
                      . .+.     ..++|++|++++|  .+.+.    ++ ..+..+++|++|++++|.+++..  .    +. ..++|++|++
T Consensus       302 ~-~l~~~l~~~~~~L~~L~L~~n--~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  377 (461)
T 1z7x_W          302 R-LLCETLLEPGCQLESLWVKSC--SFTAACCSHFS-SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  377 (461)
T ss_dssp             H-HHHHHHTSTTCCCCEEECTTS--CCBGGGHHHHH-HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             H-HHHHHhccCCccceeeEcCCC--CCchHHHHHHH-HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence            2 222     2368888888888  55543    34 56677899999999999887642  1    22 2679999999


Q ss_pred             CCCccCc----cCcccccCCCCCCEEecCCCCCCCc
Q 022302          260 SYNYYIH----SSLEGLANLTNLQVLDLSDNQNLTT  291 (299)
Q Consensus       260 ~~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~g~  291 (299)
                      ++|.+++    .+|..+..+++|++|++++|++++.
T Consensus       378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            9999986    7788888899999999999998754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=3e-15  Score=120.04  Aligned_cols=112  Identities=25%  Similarity=0.252  Sum_probs=86.3

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.+.+..+.    .+..+++|++|++++|.+++..+..+..+++|++|++++|++++ +++..+..+++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQL  102 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCccc
Confidence            6788888888888877665    67788888888888888887666667888888888888888885 444467788888


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI  245 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  245 (299)
                      ++|++++|  .+.+. +...+..+++|++|++++|.+++.
T Consensus       103 ~~L~l~~N--~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          103 KELALDTN--QLKSV-PDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CEEECCSS--CCSCC-CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CEEECcCC--cceEe-CHHHhcCCcccCEEEecCCCeecc
Confidence            88888888  55543 425567788888888888887764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.3e-15  Score=122.75  Aligned_cols=126  Identities=21%  Similarity=0.207  Sum_probs=102.1

Q ss_pred             cEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEE
Q 022302          129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL  208 (299)
Q Consensus       129 ~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L  208 (299)
                      +.+++++|.++....     .+  .++|++|++++|.++ .+|..+..+++|++|++++|++++ +++..|..+++|++|
T Consensus        13 ~~l~~~~~~l~~ip~-----~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L   83 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK-----GI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTL   83 (193)
T ss_dssp             TEEECTTSCCSSCCS-----CC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCCCcCCC-----CC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEE
Confidence            678999998886543     22  368999999999997 567888899999999999999986 454578899999999


Q ss_pred             ECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCc
Q 022302          209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIH  266 (299)
Q Consensus       209 ~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~  266 (299)
                      ++++|  .+.+..+ ..+..+++|++|++++|.++..+.  +..+++|+.|++++|.+..
T Consensus        84 ~Ls~N--~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           84 ILSYN--RLRCIPP-RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             ECCSS--CCCBCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ECCCC--ccCEeCH-HHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99999  6665555 678888899999999998887764  7778888888888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.62  E-value=1e-16  Score=147.49  Aligned_cols=168  Identities=22%  Similarity=0.170  Sum_probs=114.2

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCC-CCCEEECCCCCCCc----cchHhhccCCCCcEEeCCCCcCCCcc
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK-QLKMLNLGDNFFND----SILPYLNTLTSLTTLILSDNSIEGSR  194 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~  194 (299)
                      ..+..+++|++|++++|.+....+..+...+.... +|++|++++|.++.    .++..+..+++|++|++++|.+++..
T Consensus        50 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  129 (461)
T 1z7x_W           50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG  129 (461)
T ss_dssp             HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred             HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence            34566778888888888776654432222222222 68888888888774    45777778888888888888876432


Q ss_pred             hhh----hhcCCCCCCEEECCCCcCCCCCc----cchhhhccCCCCcEEECCCCCCCCcc--ccc-----CCCCCCEEeC
Q 022302          195 TKQ----GLANLRYLQVLDLSGNFNITSGS----LTRLGLANLTNLKKLDLGSCGITTIQ--GLA-----KLKNLEALDL  259 (299)
Q Consensus       195 p~~----~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~-----~l~~L~~L~L  259 (299)
                      +..    .....++|++|++++|  .+.+.    ++ ..+..+++|++|++++|.+++..  .+.     ..++|++|++
T Consensus       130 ~~~l~~~l~~~~~~L~~L~L~~n--~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L  206 (461)
T 1z7x_W          130 LQLLCEGLLDPQCRLEKLQLEYC--SLSAASCEPLA-SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL  206 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTS--CCBGGGHHHHH-HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred             HHHHHHHHhcCCCcceEEECCCC--CCCHHHHHHHH-HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence            221    1223457888888888  55442    23 45667788888888888876542  121     3568999999


Q ss_pred             CCCccCcc----CcccccCCCCCCEEecCCCCCCC
Q 022302          260 SYNYYIHS----SLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       260 ~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      ++|.+++.    ++..+..+++|++|++++|++.+
T Consensus       207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            99988864    57777788999999999998764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=1.1e-15  Score=122.52  Aligned_cols=133  Identities=23%  Similarity=0.195  Sum_probs=75.1

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCC-CCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK-QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      .+.++++|++|++++|.++.. +     .+..+. +|++|++++|.+++.  ..+..+++|++|++++|++++ +|+..+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~-----~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~   84 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-E-----NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLD   84 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-C-----CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHH
T ss_pred             hcCCcCCceEEEeeCCCCchh-H-----HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchh
Confidence            345566777777777776654 3     233333 677777777766653  456666666677776666663 443344


Q ss_pred             cCCCCCCEEECCCCcCCCCCccch-hhhccCCCCcEEECCCCCCCCccc-----ccCCCCCCEEeCCCCccC
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTR-LGLANLTNLKKLDLGSCGITTIQG-----LAKLKNLEALDLSYNYYI  265 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-----l~~l~~L~~L~L~~N~l~  265 (299)
                      ..+++|++|++++|  .+. .++. ..+..+++|++|++++|.++..+.     +..+++|+.|++++|.+.
T Consensus        85 ~~l~~L~~L~L~~N--~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           85 QALPDLTELILTNN--SLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHCTTCCEEECCSC--CCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hcCCCCCEEECCCC--cCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            66666666666666  332 2331 145555566666666655554432     445555555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=7.9e-15  Score=119.50  Aligned_cols=111  Identities=26%  Similarity=0.348  Sum_probs=96.8

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.++... .    .+..+++|++|++++|.+++..+..|..+++|++|+|++|++++ +++..|..+++|
T Consensus        31 ~~l~~L~L~~n~i~~ip-~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L  104 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP-K----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL  104 (193)
T ss_dssp             TTCCEEECCSSCCCSCC-G----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTC
T ss_pred             CCCCEEECCCCcCchhH-H----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE-eCHHHhCCCCCC
Confidence            58999999999998654 4    78999999999999999998888889999999999999999996 555579999999


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI  245 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  245 (299)
                      ++|++++|  .+... +...+..+++|+.|++++|.+...
T Consensus       105 ~~L~L~~N--~l~~~-~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          105 RLLSLHGN--DISVV-PEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CEEECCSS--CCCBC-CTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CEEECCCC--CCCee-ChhhhhcCccccEEEeCCCCeecC
Confidence            99999999  66644 436788999999999999988653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=1.4e-15  Score=122.01  Aligned_cols=133  Identities=22%  Similarity=0.178  Sum_probs=109.7

Q ss_pred             hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302          149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN  228 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~  228 (299)
                      .+..+++|++|++++|.++. +|......++|++|++++|.+++ +  ..+..+++|++|++++|  .+.+. ++..+..
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~-~--~~l~~l~~L~~L~Ls~N--~l~~~-~~~~~~~   86 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L--DGFPLLRRLKTLLVNNN--RICRI-GEGLDQA   86 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E--CCCCCCSSCCEEECCSS--CCCEE-CSCHHHH
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc-c--cccccCCCCCEEECCCC--ccccc-Ccchhhc
Confidence            46678899999999999985 45433334499999999999985 4  26899999999999999  66644 4245689


Q ss_pred             CCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCccc----ccCCCCCCEEecCCCCCC
Q 022302          229 LTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEG----LANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       229 l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~l~~N~l~  289 (299)
                      +++|++|++++|.++..+   .+..+++|+.|++++|.++ .+|..    +..+++|++|++++|.+.
T Consensus        87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999999999998866   3788999999999999998 56664    889999999999999763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.60  E-value=1.4e-14  Score=137.95  Aligned_cols=60  Identities=25%  Similarity=0.179  Sum_probs=42.2

Q ss_pred             CCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          230 TNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       230 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      ++|+.|++++|++++.+  ..+++|+.|++++|.++ .+|.   .+++|++|++++|+++ .+|+.+
T Consensus       221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l  280 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESL  280 (622)
T ss_dssp             TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGG
T ss_pred             CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHH
Confidence            56677777777766654  45577777888877777 4555   5677888888888887 677644

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.58  E-value=8.6e-18  Score=137.62  Aligned_cols=158  Identities=27%  Similarity=0.243  Sum_probs=126.1

Q ss_pred             cCCCCCccEEeCCCCCCCCcchh--hhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          122 FHPFEELQRLDLPGNWFTGIYEN--RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      +.....++.++++.+.+.+..|.  .+...+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|. .+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hh
Confidence            34445666667777777666542  122267889999999999999987 56 7889999999999999998 5775 67


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCccc-----
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEG-----  271 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p~~-----  271 (299)
                      ..+++|++|++++|  .+.+ ++  .+..+++|++|++++|.+++.+   .+..+++|++|++++|.+++.+|..     
T Consensus        90 ~~~~~L~~L~L~~N--~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  164 (198)
T 1ds9_A           90 AVADTLEELWISYN--QIAS-LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE  164 (198)
T ss_dssp             HHHHHCSEEEEEEE--ECCC-HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred             hcCCcCCEEECcCC--cCCc-CC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence            77899999999999  6665 44  5788999999999999999864   3888999999999999998776653     


Q ss_pred             -----ccCCCCCCEEecCCCCCCC
Q 022302          272 -----LANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       272 -----l~~l~~L~~L~l~~N~l~g  290 (299)
                           +..+++|++||  +|+++.
T Consensus       165 ~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          165 YRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             HHHHHHHhCCCcEEEC--CcccCH
Confidence                 78899999987  677654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=1.3e-17  Score=136.60  Aligned_cols=139  Identities=27%  Similarity=0.281  Sum_probs=119.3

Q ss_pred             hhcCCCCCCEEECCCCCCCccchH------hhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccc
Q 022302          149 SFGSLKQLKMLNLGDNFFNDSILP------YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT  222 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~  222 (299)
                      .+.....++.++++.+.+++..|.      .+..+++|++|++++|.+++ +|  .+..+++|++|++++|  .+. .+|
T Consensus        13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n--~l~-~l~   86 (198)
T 1ds9_A           13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRN--LIK-KIE   86 (198)
T ss_dssp             HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEE--EEC-SCS
T ss_pred             HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCC--Ccc-ccc
Confidence            466677888888888888877665      89999999999999999986 66  6889999999999999  555 456


Q ss_pred             hhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCc-ccccCCCCCCEEecCCCCCCCccCC
Q 022302          223 RLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSL-EGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       223 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                       ..+..+++|++|++++|++++.+.+..+++|+.|++++|.+++..+ +.+..+++|++|++++|++.+.+|.
T Consensus        87 -~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           87 -NLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             -SHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             -chhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence             5677789999999999999998888889999999999999995332 5789999999999999999877664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.53  E-value=1.1e-14  Score=129.52  Aligned_cols=161  Identities=22%  Similarity=0.158  Sum_probs=126.9

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch-HhhccCCCCcE-EeCCCCcCCCcchhhhhcCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTT-LILSDNSIEGSRTKQGLANLR  203 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~L~~n~l~~~~p~~~~~~l~  203 (299)
                      +++++|+|++|+++.+.+.    .|.++++|++|+|++|++.+.+| ..|.+++++++ +.+..|+++. +++..|..++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred             CCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence            5799999999999988776    78999999999999999876665 46788988775 5667788884 6656899999


Q ss_pred             CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCC-CCCCCccc--ccCC-CCCCEEeCCCCccCccCcccccCCCCCC
Q 022302          204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS-CGITTIQG--LAKL-KNLEALDLSYNYYIHSSLEGLANLTNLQ  279 (299)
Q Consensus       204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~--l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~  279 (299)
                      +|++|++++|  .+....+ ..+....++..+++.+ ++++..+.  +..+ ..++.|++++|+++ .+|+.....++|+
T Consensus       105 ~L~~L~l~~n--~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~  180 (350)
T 4ay9_X          105 NLQYLLISNT--GIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLD  180 (350)
T ss_dssp             TCCEEEEEEE--CCSSCCC-CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEE
T ss_pred             cccccccccc--ccccCCc-hhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchh
Confidence            9999999999  6654433 4556677888999966 45666543  4444 46899999999999 5666666778899


Q ss_pred             EEecCCCCCCCccCCC
Q 022302          280 VLDLSDNQNLTTLGKP  295 (299)
Q Consensus       280 ~L~l~~N~l~g~ip~~  295 (299)
                      ++++.+|+..+.||+.
T Consensus       181 ~l~l~~~n~l~~i~~~  196 (350)
T 4ay9_X          181 ELNLSDNNNLEELPND  196 (350)
T ss_dssp             EEECTTCTTCCCCCTT
T ss_pred             HHhhccCCcccCCCHH
Confidence            9999876655678864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.52  E-value=6.4e-15  Score=132.12  Aligned_cols=161  Identities=24%  Similarity=0.232  Sum_probs=94.2

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCC-CCCCEEECCCCCCCccchHhhc-cCCCCcEEeCCCCcCCCcchhhhh----
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNFFNDSILPYLN-TLTSLTTLILSDNSIEGSRTKQGL----  199 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~----  199 (299)
                      +.|++|++++|.++......+...+... ++|++|+|++|.+++.....+. .+++|++|+|++|.++..... .+    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~-~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK-DLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH-HHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH-HHHHHH
Confidence            4567777777777665544333344432 5777777777777544333332 345677777777776532221 22    


Q ss_pred             -cCCCCCCEEECCCCcCCCCC----ccchhhhccCCCCcEEECCCCCCCCcc------cccCCCCCCEEeCCCCccCcc-
Q 022302          200 -ANLRYLQVLDLSGNFNITSG----SLTRLGLANLTNLKKLDLGSCGITTIQ------GLAKLKNLEALDLSYNYYIHS-  267 (299)
Q Consensus       200 -~~l~~L~~L~Ls~n~~~~~~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~N~l~~~-  267 (299)
                       ...++|++|+|++|  .+..    .+. ..+..+++|++|+|++|.+++..      .+...++|++|+|++|.+++. 
T Consensus       151 ~~~~~~L~~L~Ls~n--~l~~~~~~~l~-~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g  227 (372)
T 3un9_A          151 LHDQCQITTLRLSNN--PLTAAGVAVLM-EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA  227 (372)
T ss_dssp             HSTTCCCCEEECCSS--CCHHHHHHHHH-HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred             HhcCCccceeeCCCC--CCChHHHHHHH-HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence             23566777777777  4332    122 33455667777777777766432      255566777777777777643 


Q ss_pred             ---CcccccCCCCCCEEecCCCCCCC
Q 022302          268 ---SLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       268 ---~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                         ++..+...++|++|+|++|+|+.
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence               33344456677777777777653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=5.7e-14  Score=132.59  Aligned_cols=155  Identities=22%  Similarity=0.251  Sum_probs=120.8

Q ss_pred             ccccCCCCCccEEe-CCCCCCCCcchhh----hHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCc
Q 022302          119 MSLFHPFEELQRLD-LPGNWFTGIYENR----AYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS  193 (299)
Q Consensus       119 ~~~~~~l~~L~~L~-L~~n~l~~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  193 (299)
                      +..++.+++|+.|+ ++.|.+.......    ....+. ...|+.|++++|.+++ +|. ++.+++|++|++++|+++ .
T Consensus       402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~  477 (567)
T 1dce_A          402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A  477 (567)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred             HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence            34567788888888 6665443221100    000111 1359999999999987 565 999999999999999999 6


Q ss_pred             chhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc--c-cccCCCCCCEEeCCCCccCccCcc
Q 022302          194 RTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI--Q-GLAKLKNLEALDLSYNYYIHSSLE  270 (299)
Q Consensus       194 ~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~L~~N~l~~~~p~  270 (299)
                      +|. .++.+++|+.|++++|  .+.+ +|  .+..+++|+.|++++|++++.  + .+..+++|+.|+|++|.+++..|.
T Consensus       478 lp~-~~~~l~~L~~L~Ls~N--~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          478 LPP-ALAALRCLEVLQASDN--ALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CCG-GGGGCTTCCEEECCSS--CCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             cch-hhhcCCCCCEEECCCC--CCCC-Cc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            886 7999999999999999  7766 55  689999999999999999987  3 489999999999999999976543


Q ss_pred             c---ccCCCCCCEEec
Q 022302          271 G---LANLTNLQVLDL  283 (299)
Q Consensus       271 ~---l~~l~~L~~L~l  283 (299)
                      .   +..+++|+.|++
T Consensus       552 ~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          552 QERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTHHHHHCTTCSEEEC
T ss_pred             HHHHHHHCcccCccCC
Confidence            2   245899999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=3.2e-13  Score=107.62  Aligned_cols=106  Identities=22%  Similarity=0.185  Sum_probs=75.2

Q ss_pred             CCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEE
Q 022302          156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL  235 (299)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L  235 (299)
                      .+.+++++|.++. +|..+  .++|++|++++|++++..+ ..|..+++|++|++++|  .+.+..+ ..+..+++|++|
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N--~l~~l~~-~~f~~l~~L~~L   83 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNN--QLTVLPA-GVFDKLTQLTQL   83 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSS--CCCCCCT-TTTTTCTTCCEE
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCC--CcCccCh-hhccCCCCCCEE
Confidence            5678888888874 55544  3678888888888876434 46778888888888888  5554433 556777778888


Q ss_pred             ECCCCCCCCccc--ccCCCCCCEEeCCCCccCccC
Q 022302          236 DLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSS  268 (299)
Q Consensus       236 ~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~  268 (299)
                      ++++|++++.+.  +..+++|+.|+|++|.++...
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            888887777653  667777777777777776543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=4.1e-13  Score=107.01  Aligned_cols=83  Identities=30%  Similarity=0.316  Sum_probs=47.6

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.+++..+.    .|..+++|++|++++|++++..+..+..+++|++|+|++|++++ +++..|..+++|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCC
Confidence            4556666666666665554    55556666666666666655444445556666666666666553 333345555666


Q ss_pred             CEEECCCC
Q 022302          206 QVLDLSGN  213 (299)
Q Consensus       206 ~~L~Ls~n  213 (299)
                      ++|++++|
T Consensus       105 ~~L~L~~N  112 (170)
T 3g39_A          105 THIWLLNN  112 (170)
T ss_dssp             CEEECCSS
T ss_pred             CEEEeCCC
Confidence            66666665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=3.4e-13  Score=107.93  Aligned_cols=104  Identities=23%  Similarity=0.218  Sum_probs=75.0

Q ss_pred             CCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEE
Q 022302          156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL  235 (299)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L  235 (299)
                      -+.+++++|.++ .+|..+.  ++|++|++++|++++..| ..|..+++|++|+|++|  .+.+. |...+..+++|++|
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N--~l~~i-~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSN--KLTAI-PTGVFDKLTQLTQL   86 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEE
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCC--CCCcc-ChhHhCCcchhhEE
Confidence            367888888885 4565443  778888888888876434 46788888888888888  66553 32556777888888


Q ss_pred             ECCCCCCCCccc--ccCCCCCCEEeCCCCccCc
Q 022302          236 DLGSCGITTIQG--LAKLKNLEALDLSYNYYIH  266 (299)
Q Consensus       236 ~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~  266 (299)
                      ++++|++++.+.  +..+++|++|+|++|.+..
T Consensus        87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            888888777653  6677778888888877774

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=6.9e-13  Score=106.13  Aligned_cols=83  Identities=29%  Similarity=0.326  Sum_probs=57.3

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      ++|++|++++|.+.+..|.    .|..+++|++|+|++|++++..+..+..+++|++|+|++|++++ +|+..+..+++|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence            5677777777777776665    66777777777777777776555556677777777777777764 444346667777


Q ss_pred             CEEECCCC
Q 022302          206 QVLDLSGN  213 (299)
Q Consensus       206 ~~L~Ls~n  213 (299)
                      ++|++++|
T Consensus       108 ~~L~L~~N  115 (174)
T 2r9u_A          108 THIYLYNN  115 (174)
T ss_dssp             SEEECCSS
T ss_pred             CEEEeCCC
Confidence            77777777

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=4.7e-12  Score=111.47  Aligned_cols=164  Identities=16%  Similarity=0.186  Sum_probs=106.3

Q ss_pred             ccccccCC--------CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCC
Q 022302          117 LNMSLFHP--------FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN  188 (299)
Q Consensus       117 ~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  188 (299)
                      ++...|.+        +++|++|++.+ .++.+.+.    +|.++++|+.+++++|.+....+..|..+.++.++.+..+
T Consensus        84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~----aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~  158 (329)
T 3sb4_A           84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA----AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSS  158 (329)
T ss_dssp             ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT----TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCT
T ss_pred             cCHHHhcccccccccccCCCcEEECCc-cccchhHH----HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcch
Confidence            44566777        99999999988 78877666    8899999999999999876555566666666666655442


Q ss_pred             cC-------C-------------------Ccchhhhh---------------------------cCCCCCCEEECCCCcC
Q 022302          189 SI-------E-------------------GSRTKQGL---------------------------ANLRYLQVLDLSGNFN  215 (299)
Q Consensus       189 ~l-------~-------------------~~~p~~~~---------------------------~~l~~L~~L~Ls~n~~  215 (299)
                      ..       .                   +.++...+                           ..+++|+.+++++|  
T Consensus       159 ~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n--  236 (329)
T 3sb4_A          159 DAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT--  236 (329)
T ss_dssp             HHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB--
T ss_pred             hhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC--
Confidence            11       0                   00000000                           12567777777776  


Q ss_pred             CCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCC-EEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          216 ITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLE-ALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       216 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      ... .++...|.++++|+.+++.+| ++.+.  .|..+++|+ .+++.+ .++...+.+|.++++|+.|++++|++..
T Consensus       237 ~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          237 NAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             CCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             Ccc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            433 344466777777777777776 55443  366777777 777766 5554555677777777777777777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=2.6e-13  Score=121.66  Aligned_cols=185  Identities=18%  Similarity=0.154  Sum_probs=124.4

Q ss_pred             CcEEEeeeCc-cccccccCCCCcccccccccc-CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLF-HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS  169 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  169 (299)
                      ..+..+++++ .+....      ...+ ...+ ...++|++|+|++|.++......+.   ..+++|++|+|++|.+++.
T Consensus        72 ~~L~~L~Ls~n~l~~~~------~~~l-~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~---~~L~~L~~L~Ls~n~l~~~  141 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVK------CTVV-AAVLGSGRHALDEVNLASCQLDPAGLRTLL---PVFLRARKLGLQLNSLGPE  141 (372)
T ss_dssp             TTCCEEECTTSCCCHHH------HHHH-HHHHSSCSSCEEEEECTTCCCCHHHHHHTH---HHHHTEEEEECCSSCCCHH
T ss_pred             hhCCEEEecCCCCCHHH------HHHH-HHHHhhCCCCceEEEecCCCCCHHHHHHHH---HHHHhccHhhcCCCCCCHH
Confidence            3577888887 543310      0001 1112 2347999999999998765444222   2355899999999999876


Q ss_pred             chHhhc-----cCCCCcEEeCCCCcCCCcch---hhhhcCCCCCCEEECCCCcCCCCCc----cchhhhccCCCCcEEEC
Q 022302          170 ILPYLN-----TLTSLTTLILSDNSIEGSRT---KQGLANLRYLQVLDLSGNFNITSGS----LTRLGLANLTNLKKLDL  237 (299)
Q Consensus       170 ~p~~l~-----~l~~L~~L~L~~n~l~~~~p---~~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~~~~l~~L~~L~L  237 (299)
                      ....+.     ..++|++|+|++|.++....   ...+..+++|++|+|++|  .+.+.    +. ..+...++|+.|+|
T Consensus       142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~~~L~-~~L~~~~~L~~L~L  218 (372)
T 3un9_A          142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGLELLA-AQLDRNRQLQELNV  218 (372)
T ss_dssp             HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHHHHHH-HHGGGCSCCCEEEC
T ss_pred             HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHHHHHH-HHHhcCCCcCeEEC
Confidence            555553     46889999999999874211   124577899999999999  54422    23 45677889999999


Q ss_pred             CCCCCCCcc------cccCCCCCCEEeCCCCccCccCcccccCC---CC--CCEEe--cCCCCCC
Q 022302          238 GSCGITTIQ------GLAKLKNLEALDLSYNYYIHSSLEGLANL---TN--LQVLD--LSDNQNL  289 (299)
Q Consensus       238 s~n~l~~~~------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l---~~--L~~L~--l~~N~l~  289 (299)
                      ++|.+++..      .+...++|++|+|++|.+++.....+..+   ..  |+.+.  +..|.+.
T Consensus       219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          219 AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            999998643      25567899999999999987655555433   21  66666  6666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.33  E-value=3.6e-13  Score=127.55  Aligned_cols=165  Identities=14%  Similarity=0.060  Sum_probs=111.6

Q ss_pred             CCCCCccEEeCCC-----------CCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhcc-CCCCcEEeCC----
Q 022302          123 HPFEELQRLDLPG-----------NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT-LTSLTTLILS----  186 (299)
Q Consensus       123 ~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~----  186 (299)
                      ..+++|++|++++           |.+++....   .....+++|++|+++.|.+++..+..++. +++|++|+++    
T Consensus       339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~  415 (592)
T 3ogk_B          339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI---ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR  415 (592)
T ss_dssp             HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH---HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred             HhCCCCCEEEeecCccccccccccCccCHHHHH---HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence            3456677777762           344433211   12345777888888777777766666665 7888888885    


Q ss_pred             CCcCCCc-----chhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--c-ccCCCCCCEEe
Q 022302          187 DNSIEGS-----RTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--G-LAKLKNLEALD  258 (299)
Q Consensus       187 ~n~l~~~-----~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-l~~l~~L~~L~  258 (299)
                      .|.+++.     ++. .+..+++|++|++++|.....+.........+++|++|++++|++++..  . +..+++|+.|+
T Consensus       416 ~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  494 (592)
T 3ogk_B          416 EERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE  494 (592)
T ss_dssp             CSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred             CccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence            5666642     222 4666888888888765212444333233345889999999999987632  2 57789999999


Q ss_pred             CCCCccCcc-CcccccCCCCCCEEecCCCCCCCc
Q 022302          259 LSYNYYIHS-SLEGLANLTNLQVLDLSDNQNLTT  291 (299)
Q Consensus       259 L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~g~  291 (299)
                      +++|.+++. ++..+..+++|++|++++|++++.
T Consensus       495 l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            999998765 344456789999999999998765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=8.5e-12  Score=110.47  Aligned_cols=89  Identities=22%  Similarity=0.188  Sum_probs=79.3

Q ss_pred             cCCCCCccEEeCCC-CCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302          122 FHPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA  200 (299)
Q Consensus       122 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  200 (299)
                      +..+++|++|+|++ |.+.+..+.    .|..+++|++|+|++|++++..|..|.++++|++|+|++|++++ +|+..+.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~  101 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQ  101 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcc
Confidence            77889999999996 999999877    89999999999999999999888899999999999999999995 6665666


Q ss_pred             CCCCCCEEECCCCcCCCC
Q 022302          201 NLRYLQVLDLSGNFNITS  218 (299)
Q Consensus       201 ~l~~L~~L~Ls~n~~~~~  218 (299)
                      .++ |+.|++.+|  .+.
T Consensus       102 ~~~-L~~l~l~~N--~~~  116 (347)
T 2ifg_A          102 GLS-LQELVLSGN--PLH  116 (347)
T ss_dssp             SCC-CCEEECCSS--CCC
T ss_pred             cCC-ceEEEeeCC--Ccc
Confidence            665 999999999  544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.30  E-value=1.2e-11  Score=108.85  Aligned_cols=157  Identities=14%  Similarity=0.157  Sum_probs=124.3

Q ss_pred             ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCC-------C-------------------ccc
Q 022302          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFF-------N-------------------DSI  170 (299)
Q Consensus       117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l-------~-------------------~~~  170 (299)
                      +....|..+++|+++++++|.+..+.+.    .|.++.++..+.+..+..       .                   +.+
T Consensus       115 I~~~aF~~~~~L~~l~l~~n~i~~i~~~----aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l  190 (329)
T 3sb4_A          115 IEDAAFKGCDNLKICQIRKKTAPNLLPE----ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL  190 (329)
T ss_dssp             ECTTTTTTCTTCCEEEBCCSSCCEECTT----SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH
T ss_pred             hhHHHhhcCcccceEEcCCCCccccchh----hhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH
Confidence            4566899999999999999998877666    777777777776655210       0                   011


Q ss_pred             hHh---------------------------h-ccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccc
Q 022302          171 LPY---------------------------L-NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT  222 (299)
Q Consensus       171 p~~---------------------------l-~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~  222 (299)
                      +..                           + ..+++|++|++++|+++ .++...|.++.+|+.+++.+|   . ..++
T Consensus       191 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n---i-~~I~  265 (329)
T 3sb4_A          191 EDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN---L-KTIG  265 (329)
T ss_dssp             HHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT---C-CEEC
T ss_pred             HHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc---c-ceeh
Confidence            110                           1 13789999999999988 588888999999999999998   2 2355


Q ss_pred             hhhhccCCCCc-EEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302          223 RLGLANLTNLK-KLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL  283 (299)
Q Consensus       223 ~~~~~~l~~L~-~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  283 (299)
                      ...|.++++|+ .+++.+ +++.+.  .|..+++|+.+++++|.++...+.+|.++++|+.+..
T Consensus       266 ~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          266 QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            57899999999 999988 676654  5899999999999999999777789999999999863

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.28  E-value=4.6e-12  Score=119.92  Aligned_cols=159  Identities=14%  Similarity=0.036  Sum_probs=100.2

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCC----ccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN----DSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  198 (299)
                      .++++|++|++++|.+++.....+......+++|++|++++|.++    +.++..+..+++|++|++++|.+.+ ++. .
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~  238 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG-F  238 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH-H
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH-H
Confidence            367788888888887765532222224566788888888888876    3345555678888888888887764 553 5


Q ss_pred             hcCCCCCCEEECCCCcCC------------------------CCCccchhhhccCCCCcEEECCCCCCCCccc---ccCC
Q 022302          199 LANLRYLQVLDLSGNFNI------------------------TSGSLTRLGLANLTNLKKLDLGSCGITTIQG---LAKL  251 (299)
Q Consensus       199 ~~~l~~L~~L~Ls~n~~~------------------------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---l~~l  251 (299)
                      +..+++|++|+++.....                        ..+.++ ..+..+++|++|++++|.+++...   +..+
T Consensus       239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~  317 (592)
T 3ogk_B          239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKC  317 (592)
T ss_dssp             HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTC
T ss_pred             HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhC
Confidence            677777777777632101                        112233 445566777777777777554321   4667


Q ss_pred             CCCCEEeCCCCccCccCcccccCCCCCCEEecC
Q 022302          252 KNLEALDLSYNYYIHSSLEGLANLTNLQVLDLS  284 (299)
Q Consensus       252 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~  284 (299)
                      ++|++|+++++...+.++.....+++|++|+++
T Consensus       318 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             cCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence            777777777332222334444567778888887

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=5.5e-11  Score=105.22  Aligned_cols=104  Identities=18%  Similarity=0.139  Sum_probs=87.5

Q ss_pred             CEEECCCC-CCCccchHhhccCCCCcEEeCCC-CcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcE
Q 022302          157 KMLNLGDN-FFNDSILPYLNTLTSLTTLILSD-NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK  234 (299)
Q Consensus       157 ~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~  234 (299)
                      ..++.+++ .++. +|. +..+++|++|+|++ |++++ +++..|..+++|++|+|++|  .+.+..+ ..|..+++|++
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N--~l~~~~~-~~~~~l~~L~~   84 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKS--GLRFVAP-DAFHFTPRLSR   84 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSS--CCCEECT-TGGGSCSCCCE
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCC--ccceeCH-HHhcCCcCCCE
Confidence            45688888 8885 777 99999999999996 99985 56558999999999999999  8887666 78899999999


Q ss_pred             EECCCCCCCCccc--ccCCCCCCEEeCCCCccCcc
Q 022302          235 LDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHS  267 (299)
Q Consensus       235 L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~  267 (299)
                      |+|++|+|++.++  +..++ |+.|+|.+|.+...
T Consensus        85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             EeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            9999999998764  44444 99999999998853

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.17  E-value=5.8e-12  Score=119.21  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=15.0

Q ss_pred             CCCCcEEECCCCCCCCcc--c-ccCCCCCCEEeCCCC
Q 022302          229 LTNLKKLDLGSCGITTIQ--G-LAKLKNLEALDLSYN  262 (299)
Q Consensus       229 l~~L~~L~Ls~n~l~~~~--~-l~~l~~L~~L~L~~N  262 (299)
                      +++|++|++++|.+++..  . +..+++|++|++++|
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            344555555554433211  1 334455555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.16  E-value=2.7e-12  Score=121.54  Aligned_cols=132  Identities=13%  Similarity=0.109  Sum_probs=66.5

Q ss_pred             CCCCCEEECCCCCCCccchHhhc-cCCCCcEEeCC--C----CcCCCc-----chhhhhcCCCCCCEEECCCCcCCCCCc
Q 022302          153 LKQLKMLNLGDNFFNDSILPYLN-TLTSLTTLILS--D----NSIEGS-----RTKQGLANLRYLQVLDLSGNFNITSGS  220 (299)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~--~----n~l~~~-----~p~~~~~~l~~L~~L~Ls~n~~~~~~~  220 (299)
                      +++|++|+++.|.+++..+..+. .+++|++|+++  +    +.+++.     ++ ..+..+++|++|+++++   +.+.
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~-~l~~~~~~L~~L~L~~~---l~~~  446 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG-AIVEHCKDLRRLSLSGL---LTDK  446 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH-HHHHHCTTCCEEECCSS---CCHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH-HHHhhCCCccEEeecCc---ccHH
Confidence            44555555544555444333333 35555555555  2    233310     11 12344555666666442   2222


Q ss_pred             cchhhhc-cCCCCcEEECCCCCCCCcc--cc-cCCCCCCEEeCCCCccCccCcc-cccCCCCCCEEecCCCCCC
Q 022302          221 LTRLGLA-NLTNLKKLDLGSCGITTIQ--GL-AKLKNLEALDLSYNYYIHSSLE-GLANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       221 ~~~~~~~-~l~~L~~L~Ls~n~l~~~~--~l-~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~  289 (299)
                      .. ..+. .+++|++|++++|.+++..  .+ ..+++|+.|++++|.+++..+. .+..+++|++|++++|+++
T Consensus       447 ~~-~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          447 VF-EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HH-HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HH-HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            22 1222 2666777777666665432  12 4566777777777776544333 3344667777777777663

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.13  E-value=9.4e-10  Score=99.42  Aligned_cols=162  Identities=12%  Similarity=0.166  Sum_probs=106.7

Q ss_pred             ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCC--------
Q 022302          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN--------  188 (299)
Q Consensus       117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n--------  188 (299)
                      +....|.++++|+.+++.+|.++.+...    .|. ..+|+.+.+..+ +.......|.++++|+.+++..+        
T Consensus       171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~----aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~a  244 (401)
T 4fdw_A          171 LKEDIFYYCYNLKKADLSKTKITKLPAS----TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEA  244 (401)
T ss_dssp             ECSSTTTTCTTCCEEECTTSCCSEECTT----TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTT
T ss_pred             ehHHHhhCcccCCeeecCCCcceEechh----hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccc
Confidence            4456788888999999988877766554    444 466666666643 44444455666666666666543        


Q ss_pred             -------------cCCCcchhhhhcCCCCCCEEECCCCcCCCC----CccchhhhccCCCCcEEECCCCCCCCcc--ccc
Q 022302          189 -------------SIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGLANLTNLKKLDLGSCGITTIQ--GLA  249 (299)
Q Consensus       189 -------------~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~  249 (299)
                                   .++ .++...|..+++|+.+++.+|  ...    ..++...|..|++|+.+++.+ .++.+.  .+.
T Consensus       245 F~~~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~--~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~  320 (401)
T 4fdw_A          245 FRESGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGS--TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG  320 (401)
T ss_dssp             TTTCCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESS--CCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred             cccCCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCc--cccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence                         122 244446777777777777776  322    124446777788888888873 355443  477


Q ss_pred             CCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          250 KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       250 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      .+++|+.+.+..| ++.....+|.++ +|+.+++.+|.+..
T Consensus       321 ~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          321 GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            7888888888655 554556778888 89999998887654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=3.3e-10  Score=100.88  Aligned_cols=164  Identities=16%  Similarity=0.119  Sum_probs=104.5

Q ss_pred             cCCCCCccEEeCCCCCCCC-----cchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh
Q 022302          122 FHPFEELQRLDLPGNWFTG-----IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK  196 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  196 (299)
                      ..++++|+.|.+..+....     .....+...+..+|+|+.|++++|.-. .++. + .+++|++|++..|.+......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            4567788888886653321     000112225677889999999877311 2232 3 378999999988887643322


Q ss_pred             hhhc--CCCCCCEEECCCCcCCCCCc-----cchhhh--ccCCCCcEEECCCCCCCCcc-----cccCCCCCCEEeCCCC
Q 022302          197 QGLA--NLRYLQVLDLSGNFNITSGS-----LTRLGL--ANLTNLKKLDLGSCGITTIQ-----GLAKLKNLEALDLSYN  262 (299)
Q Consensus       197 ~~~~--~l~~L~~L~Ls~n~~~~~~~-----~~~~~~--~~l~~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~L~~N  262 (299)
                       .+.  .+++|++|+|+.+.....+.     +. ..+  ..+++|++|++.+|.+.+..     ....+++|++|+|+.|
T Consensus       212 -~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          212 -DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             -HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             -HHHHccCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence             333  68999999885320011111     11 112  34789999999998886432     1235788999999999


Q ss_pred             ccCcc----CcccccCCCCCCEEecCCCCCCC
Q 022302          263 YYIHS----SLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       263 ~l~~~----~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      .+++.    ++..+..+++|+.|++++|.++.
T Consensus       290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            88864    34444567899999999998764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.97  E-value=1.9e-10  Score=97.85  Aligned_cols=154  Identities=19%  Similarity=0.169  Sum_probs=82.8

Q ss_pred             CCCCCCceEecCCCCcEEEeeeCc----cccccccCC-------------CCccccccccccCCCCCccE--EeCCCCCC
Q 022302           78 CCDDWEGVKCNATTRRVMQLSLNE----TIKFNYSSG-------------SGSALLLNMSLFHPFEELQR--LDLPGNWF  138 (299)
Q Consensus        78 ~c~~w~gv~C~~~~~~v~~l~l~~----~l~~~~~~~-------------~~~~~~~~~~~~~~l~~L~~--L~L~~n~l  138 (299)
                      .| .|.|+.|+....+|+.+....    ...+.+.++             ......++.+.+...+.|+.  ++++.|..
T Consensus        77 l~-~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~  155 (267)
T 3rw6_A           77 LK-AVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR  155 (267)
T ss_dssp             HH-HTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred             HH-hcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence            46 899999987555665443322    111111100             00111233444555555555  55566632


Q ss_pred             CCcchhhhHHhhcCCCCCCEEECCCCCCCc--cchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCC
Q 022302          139 TGIYENRAYDSFGSLKQLKMLNLGDNFFND--SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNI  216 (299)
Q Consensus       139 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~  216 (299)
                      ... +..+.-....+++|+.|+|++|.+++  .+|..+..+++|++|+|++|++.+.-....+..+ +|++|+|++|  .
T Consensus       156 ~~~-~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~N--p  231 (267)
T 3rw6_A          156 SCM-AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGN--S  231 (267)
T ss_dssp             HHH-HHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTS--T
T ss_pred             HHH-HHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCC--c
Confidence            211 11111122457788888888888876  3455666778888888888887753111123333 7778888877  5


Q ss_pred             CCCccc------hhhhccCCCCcEEE
Q 022302          217 TSGSLT------RLGLANLTNLKKLD  236 (299)
Q Consensus       217 ~~~~~~------~~~~~~l~~L~~L~  236 (299)
                      +.+.+|      ...+..+++|+.||
T Consensus       232 l~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          232 LCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CccccCcchhHHHHHHHHCcccCeEC
Confidence            554333      12355666666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.93  E-value=2.2e-09  Score=86.42  Aligned_cols=93  Identities=16%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             ccCCCCCccEEeCCCC-CCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc----hHhhccCCCCcEEeCCCCcCCCcch
Q 022302          121 LFHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI----LPYLNTLTSLTTLILSDNSIEGSRT  195 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p  195 (299)
                      .+...+.|++|+|++| .+.......+...+...++|++|+|++|.+....    ...+...++|++|+|++|.+.....
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4556677777888777 7766555555556677777777777777776432    3334455677777777777663211


Q ss_pred             ---hhhhcCCCCCCEEEC--CCC
Q 022302          196 ---KQGLANLRYLQVLDL--SGN  213 (299)
Q Consensus       196 ---~~~~~~l~~L~~L~L--s~n  213 (299)
                         ...+...++|++|++  ++|
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N  133 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQ  133 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSS
T ss_pred             HHHHHHHHhCCCceEEEecCCCC
Confidence               113444556666666  555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.92  E-value=1.8e-08  Score=90.98  Aligned_cols=158  Identities=12%  Similarity=0.118  Sum_probs=105.3

Q ss_pred             ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302          119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG  198 (299)
Q Consensus       119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  198 (299)
                      ...|.+ .+|+.+.+.. .+..+.+.    +|.++++|+.++++.|.++......|. +.+|+.+.+..+ +. .++...
T Consensus       151 ~~aF~~-~~L~~i~lp~-~l~~I~~~----aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~a  221 (401)
T 4fdw_A          151 DMAFFN-STVQEIVFPS-TLEQLKED----IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQA  221 (401)
T ss_dssp             TTTTTT-CCCCEEECCT-TCCEECSS----TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTT
T ss_pred             HHhcCC-CCceEEEeCC-CccEehHH----HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhH
Confidence            344555 3577777764 55555554    788888888888888888755555555 578888888754 44 466667


Q ss_pred             hcCCCCCCEEECCCCcCC-----C-------------CCccchhhhccCCCCcEEECCCCCCC-----Cc--ccccCCCC
Q 022302          199 LANLRYLQVLDLSGNFNI-----T-------------SGSLTRLGLANLTNLKKLDLGSCGIT-----TI--QGLAKLKN  253 (299)
Q Consensus       199 ~~~l~~L~~L~Ls~n~~~-----~-------------~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~--~~l~~l~~  253 (299)
                      |.++++|+.+++..+-..     +             ...++...|.+|++|+.+++.+|.+.     .+  ..+..+++
T Consensus       222 F~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~  301 (401)
T 4fdw_A          222 FLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK  301 (401)
T ss_dssp             TTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred             hhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence            888889999988765100     0             01223356677777888877776654     11  13777778


Q ss_pred             CCEEeCCCCccCccCcccccCCCCCCEEecCCC
Q 022302          254 LEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN  286 (299)
Q Consensus       254 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N  286 (299)
                      |+.+++.+ .++.....+|.++++|+.+.+..|
T Consensus       302 L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          302 LARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             CCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             CCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            88888874 366455567777888888888554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=2.4e-09  Score=95.33  Aligned_cols=154  Identities=19%  Similarity=0.221  Sum_probs=107.6

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhc--cCCCCcEEeCCC--CcCCCc---
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN--TLTSLTTLILSD--NSIEGS---  193 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~--n~l~~~---  193 (299)
                      .+..+++|+.|++++|.-. ..+     .+ .+++|++|++..+.++......+.  .+++|++|+|+.  |...+.   
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~-----~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIG-----KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCC-----SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eec-----cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            4567899999999887311 122     23 378999999999988765555555  789999999863  222221   


Q ss_pred             --chhhhh--cCCCCCCEEECCCCcCCCCCccchhhh---ccCCCCcEEECCCCCCCCcc------cccCCCCCCEEeCC
Q 022302          194 --RTKQGL--ANLRYLQVLDLSGNFNITSGSLTRLGL---ANLTNLKKLDLGSCGITTIQ------GLAKLKNLEALDLS  260 (299)
Q Consensus       194 --~p~~~~--~~l~~L~~L~Ls~n~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~  260 (299)
                        +.. .+  ..+++|++|++.+|  ...+... ..+   ..+++|++|+|+.|.+++..      .+..+++|+.|+++
T Consensus       240 ~~l~~-~l~~~~~p~Lr~L~L~~~--~i~~~~~-~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~  315 (362)
T 2ra8_A          240 NVFRP-LFSKDRFPNLKWLGIVDA--EEQNVVV-EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK  315 (362)
T ss_dssp             GGTGG-GSCTTTCTTCCEEEEESC--TTHHHHH-HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred             HHHHH-HHhcCCCCCcCEEeCCCC--CCchHHH-HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence              111 22  35799999999998  5543322 222   35789999999999988642      24567999999999


Q ss_pred             CCccCccCcccccC-CCCCCEEecCCCC
Q 022302          261 YNYYIHSSLEGLAN-LTNLQVLDLSDNQ  287 (299)
Q Consensus       261 ~N~l~~~~p~~l~~-l~~L~~L~l~~N~  287 (299)
                      +|.++...-..+.. +  ...++++.++
T Consensus       316 ~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          316 YNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            99988655555543 3  4668888886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.76  E-value=1.5e-08  Score=81.60  Aligned_cols=118  Identities=19%  Similarity=0.101  Sum_probs=71.7

Q ss_pred             hhHHhhcCCCCCCEEECCCC-CCCcc----chHhhccCCCCcEEeCCCCcCCCcch---hhhhcCCCCCCEEECCCCcCC
Q 022302          145 RAYDSFGSLKQLKMLNLGDN-FFNDS----ILPYLNTLTSLTTLILSDNSIEGSRT---KQGLANLRYLQVLDLSGNFNI  216 (299)
Q Consensus       145 ~~~~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~~l~~L~~L~Ls~n~~~  216 (299)
                      .+...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+.....   ...+...++|++|+|++|  .
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N--~  104 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN--F  104 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS--C
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC--c
Confidence            34446778888999999988 88653    33445567788888888888764211   113445567777777777  4


Q ss_pred             CCCc----cchhhhccCCCCcEEEC--CCCCCCCcc------cccCCCCCCEEeCCCCccC
Q 022302          217 TSGS----LTRLGLANLTNLKKLDL--GSCGITTIQ------GLAKLKNLEALDLSYNYYI  265 (299)
Q Consensus       217 ~~~~----~~~~~~~~l~~L~~L~L--s~n~l~~~~------~l~~l~~L~~L~L~~N~l~  265 (299)
                      +...    +. ..+...++|++|++  ++|.+....      .+...++|++|+|++|.+.
T Consensus       105 i~~~g~~~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          105 ISGSGILALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CCHHHHHHHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCHHHHHHHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3321    12 34455566666666  556665432      1334455666666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.64  E-value=7.7e-09  Score=87.85  Aligned_cols=81  Identities=27%  Similarity=0.231  Sum_probs=61.8

Q ss_pred             cCCCCCCEEECCCCcCCCCC--ccchhhhccCCCCcEEECCCCCCCCcccccCCC--CCCEEeCCCCccCccCcc-----
Q 022302          200 ANLRYLQVLDLSGNFNITSG--SLTRLGLANLTNLKKLDLGSCGITTIQGLAKLK--NLEALDLSYNYYIHSSLE-----  270 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~--~L~~L~L~~N~l~~~~p~-----  270 (299)
                      .++++|+.|+|++|  .+.+  .++ ..+..+++|+.|+|++|++++...+..++  +|++|+|++|.+.+.+|+     
T Consensus       167 ~~l~~L~~L~Ls~N--~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNN--RLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTS--CCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCC--CCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            56788888888888  5555  444 55678889999999999888876555554  899999999999876652     


Q ss_pred             --cccCCCCCCEEec
Q 022302          271 --GLANLTNLQVLDL  283 (299)
Q Consensus       271 --~l~~l~~L~~L~l  283 (299)
                        .+..+++|+.||=
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence              4678889988863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.24  E-value=5.6e-07  Score=71.26  Aligned_cols=82  Identities=20%  Similarity=0.242  Sum_probs=51.5

Q ss_pred             CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCccchHhhccC----CCCcEEeCCCCc-CCCcchhhhhc
Q 022302          127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLNTL----TSLTTLILSDNS-IEGSRTKQGLA  200 (299)
Q Consensus       127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~~~~  200 (299)
                      +|++||++++.++...-.    .+..+++|++|+|++|. +++..-..++.+    ++|++|+|++|. +++..-. .+.
T Consensus        62 ~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALH  136 (176)
T ss_dssp             CEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGG
T ss_pred             eEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHh
Confidence            577777777766554333    55677777777777774 665555555553    367777777764 5543222 456


Q ss_pred             CCCCCCEEECCCC
Q 022302          201 NLRYLQVLDLSGN  213 (299)
Q Consensus       201 ~l~~L~~L~Ls~n  213 (299)
                      .+++|++|+++++
T Consensus       137 ~~~~L~~L~L~~c  149 (176)
T 3e4g_A          137 HFRNLKYLFLSDL  149 (176)
T ss_dssp             GCTTCCEEEEESC
T ss_pred             cCCCCCEEECCCC
Confidence            6677777777766

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.10  E-value=1.5e-05  Score=64.26  Aligned_cols=120  Identities=11%  Similarity=0.145  Sum_probs=79.7

Q ss_pred             ccCCCCCccEEeCCCC-CCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc----chHhhccCCCCcEEeCCCCcCCCcch
Q 022302          121 LFHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGSRT  195 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p  195 (299)
                      .+.+-+.|++|+|++| .+.......+++.+..-+.|+.|+|++|.+.+.    +-+.+..-+.|++|+|++|.|....-
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3456678999999885 777665556777888888999999999998754    33445567889999999998874321


Q ss_pred             h---hhhcCCCCCCEEECCCCcCCCCCc-----cchhhhccCCCCcEEECCCCC
Q 022302          196 K---QGLANLRYLQVLDLSGNFNITSGS-----LTRLGLANLTNLKKLDLGSCG  241 (299)
Q Consensus       196 ~---~~~~~l~~L~~L~Ls~n~~~~~~~-----~~~~~~~~l~~L~~L~Ls~n~  241 (299)
                      .   ..+..-+.|++|+|++|.....|.     +. ..+..-+.|+.|+++.|.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia-~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM-MAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH-HHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH-HHHHhCCCcCeEeccCCC
Confidence            1   134455678888887652212221     22 344555667777766554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.08  E-value=2.9e-06  Score=67.15  Aligned_cols=88  Identities=15%  Similarity=0.168  Sum_probs=58.3

Q ss_pred             CCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCc-CCCcchhhhhcCC----CCCCEEECCCCcCCCCCccchhhhcc
Q 022302          154 KQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEGSRTKQGLANL----RYLQVLDLSGNFNITSGSLTRLGLAN  228 (299)
Q Consensus       154 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~~l----~~L~~L~Ls~n~~~~~~~~~~~~~~~  228 (299)
                      .+|++||++++.++...-..+..+++|++|+|++|. +++..- ..+..+    ++|++|++++|. ..+..-- ..+..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~-~ITD~Gl-~~L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCG-NVTDKGI-IALHH  137 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCT-TCCHHHH-HHGGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCC-cCCHHHH-HHHhc
Confidence            468889999888887666777888888888888885 554322 245553    368888888872 1222111 34566


Q ss_pred             CCCCcEEECCCCC-CCC
Q 022302          229 LTNLKKLDLGSCG-ITT  244 (299)
Q Consensus       229 l~~L~~L~Ls~n~-l~~  244 (299)
                      +++|++|++++|. +++
T Consensus       138 ~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CTTCCEEEEESCTTCCC
T ss_pred             CCCCCEEECCCCCCCCc
Confidence            7777777777775 444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.90  E-value=5.5e-05  Score=67.72  Aligned_cols=154  Identities=15%  Similarity=0.172  Sum_probs=84.9

Q ss_pred             cccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCC------
Q 022302          118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIE------  191 (299)
Q Consensus       118 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------  191 (299)
                      ...+|.++++|+++.+.. .++.+...    +|.++++|+.+++..+ ++......+..+.+|+.+.+..+-..      
T Consensus        63 g~~AF~~c~~L~~i~lp~-~i~~I~~~----aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF  136 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPS-TVREIGEF----AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF  136 (394)
T ss_dssp             CTTTTTTCTTEEEEECCT-TCCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred             HHHHhhCCCCceEEEeCC-CccCcchh----HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence            345678888888888864 36655554    7888888888888654 44334456677777777665433110      


Q ss_pred             --------------CcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc--ccccCCCCCC
Q 022302          192 --------------GSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI--QGLAKLKNLE  255 (299)
Q Consensus       192 --------------~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~  255 (299)
                                    ..+....|..+.+|+.+.+..+  ..  .++...|..+.+|+.+++..+ ++..  ..+..+..|+
T Consensus       137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~  211 (394)
T 4fs7_A          137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--ME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE  211 (394)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred             ecccccccccCccccccchhhhcccCCCcEEecCCc--cc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence                          0111224555566666666544  11  233345556666666666544 2222  1355556666


Q ss_pred             EEeCCCCccCccCcccccCCCCCCEEecC
Q 022302          256 ALDLSYNYYIHSSLEGLANLTNLQVLDLS  284 (299)
Q Consensus       256 ~L~L~~N~l~~~~p~~l~~l~~L~~L~l~  284 (299)
                      .+.+..+...  +.+......+|+.+.+.
T Consensus       212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip  238 (394)
T 4fs7_A          212 NMEFPNSLYY--LGDFALSKTGVKNIIIP  238 (394)
T ss_dssp             BCCCCTTCCE--ECTTTTTTCCCCEEEEC
T ss_pred             eeecCCCceE--eehhhcccCCCceEEEC
Confidence            6655544322  22333344566666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.88  E-value=0.0001  Score=65.97  Aligned_cols=113  Identities=16%  Similarity=0.146  Sum_probs=71.7

Q ss_pred             ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC---------------------CCccchHhhc
Q 022302          117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF---------------------FNDSILPYLN  175 (299)
Q Consensus       117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~---------------------l~~~~p~~l~  175 (299)
                      +....|.++++|+.+++..+ ++.+...    +|.+++.|+.+.+..+-                     ........|.
T Consensus        85 I~~~aF~~c~~L~~i~lp~~-l~~I~~~----aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~  159 (394)
T 4fs7_A           85 IGEFAFENCSKLEIINIPDS-VKMIGRC----TFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFA  159 (394)
T ss_dssp             ECTTTTTTCTTCCEECCCTT-CCEECTT----TTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTT
T ss_pred             cchhHhhCCCCCcEEEeCCC-ceEccch----hhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhc
Confidence            44567889999999999754 5444443    66677776665543321                     1111234567


Q ss_pred             cCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCC
Q 022302          176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC  240 (299)
Q Consensus       176 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n  240 (299)
                      ++.+|+.+.+..+..  .++...|..+.+|+.+++..+  . . .+....+..+..|+.+.+..+
T Consensus       160 ~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~--~-~-~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          160 TCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN--L-K-IIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             TCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT--C-C-EECTTTTTTCTTCCBCCCCTT
T ss_pred             ccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC--c-e-EeCchhhccccccceeecCCC
Confidence            788899999876542  355567888888998888776  1 1 233355666667766666544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.78  E-value=7.9e-05  Score=66.70  Aligned_cols=129  Identities=16%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302          149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN  228 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~  228 (299)
                      +|.++..|+.+.+..+.. ......+.++++|+.+.+.. .++ .++...|.++.+|+.+++..+   .. .+....|.+
T Consensus       260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~---v~-~I~~~aF~~  332 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG---IT-QILDDAFAG  332 (394)
T ss_dssp             TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT---CC-EECTTTTTT
T ss_pred             eeeecccccEEecccccc-eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc---cc-EehHhHhhC
Confidence            566677777777765433 23344566777777777753 333 355556777777777777654   11 233356777


Q ss_pred             CCCCcEEECCCCCCCCc--ccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCC
Q 022302          229 LTNLKKLDLGSCGITTI--QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN  288 (299)
Q Consensus       229 l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l  288 (299)
                      |.+|+.+.+..+ ++.+  ..|.++++|+.+++.++....   ..+..+.+|+.+.+..|.+
T Consensus       333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            777777777544 4433  247777777777777665431   3456667777776665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.75  E-value=9.9e-05  Score=66.06  Aligned_cols=134  Identities=12%  Similarity=0.192  Sum_probs=93.9

Q ss_pred             cccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhh
Q 022302          118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ  197 (299)
Q Consensus       118 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  197 (299)
                      ....|..+..|+.+.+..+. ..+...    +|.+++.|+.+.+.. .++......|.++.+|+.+++..+ ++ .+...
T Consensus       257 ~~~aF~~c~~L~~i~lp~~~-~~I~~~----aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~  328 (394)
T 4gt6_A          257 ETHAFDSCAYLASVKMPDSV-VSIGTG----AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDD  328 (394)
T ss_dssp             CTTTTTTCSSCCEEECCTTC-CEECTT----TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred             ccceeeecccccEEeccccc-ceecCc----ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHh
Confidence            34578889999999997653 333333    788999999999964 455555668899999999999865 44 46666


Q ss_pred             hhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCcc
Q 022302          198 GLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYY  264 (299)
Q Consensus       198 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l  264 (299)
                      .|.++.+|+.+.+..+   .. .+...+|.+|.+|+.+++.++... ...+..+.+|+.+.+..|.+
T Consensus       329 aF~~C~~L~~i~ip~s---v~-~I~~~aF~~C~~L~~i~~~~~~~~-~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS---VT-KIPESAFSNCTALNNIEYSGSRSQ-WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTTCTTCCEEEECTT---CC-BCCGGGGTTCTTCCEEEESSCHHH-HHTCBCCCCC----------
T ss_pred             HhhCCCCCCEEEECcc---cC-EEhHhHhhCCCCCCEEEECCceee-hhhhhccCCCCEEEeCCCCE
Confidence            8999999999999765   22 344478999999999999887532 23467778899888876654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.72  E-value=0.00038  Score=61.73  Aligned_cols=128  Identities=16%  Similarity=0.187  Sum_probs=74.6

Q ss_pred             hcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccC
Q 022302          150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANL  229 (299)
Q Consensus       150 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l  229 (299)
                      +....+|+.+.+..+ +.......+..+..|+.+.+..+ ++ .+....|..+.+|+.+.+..+   .. .++...|..+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~---i~-~i~~~aF~~c  285 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK---VK-TVPYLLCSGC  285 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC---CS-EECTTTTTTC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc---ce-eccccccccc
Confidence            344555666655443 22233345556667777776554 33 344445666777777777554   11 2333566777


Q ss_pred             CCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCC
Q 022302          230 TNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD  285 (299)
Q Consensus       230 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~  285 (299)
                      .+|+.+.+.++.++.+.  .+.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..
T Consensus       286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            77777777776666443  3667777777777544 4433345666777777776643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.62  E-value=0.00016  Score=58.14  Aligned_cols=95  Identities=12%  Similarity=0.082  Sum_probs=54.5

Q ss_pred             hHHhhcCCCCCCEEECCCC-CCCcc----chHhhccCCCCcEEeCCCCcCCCcch---hhhhcCCCCCCEEECCCCcCCC
Q 022302          146 AYDSFGSLKQLKMLNLGDN-FFNDS----ILPYLNTLTSLTTLILSDNSIEGSRT---KQGLANLRYLQVLDLSGNFNIT  217 (299)
Q Consensus       146 ~~~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~~l~~L~~L~Ls~n~~~~  217 (299)
                      +...+..-+.|++|+|++| .+...    +-+.+..-+.|++|+|++|++....-   ...+..-+.|++|+|++|.+..
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3335567788999999885 77543    33455566788888888888763211   1133445677777777773222


Q ss_pred             CCccc-hhhhccCCCCcEEECCCC
Q 022302          218 SGSLT-RLGLANLTNLKKLDLGSC  240 (299)
Q Consensus       218 ~~~~~-~~~~~~l~~L~~L~Ls~n  240 (299)
                      .|... ...+..-+.|+.|+|++|
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCC
Confidence            22110 023334445666666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.62  E-value=0.00056  Score=60.63  Aligned_cols=144  Identities=15%  Similarity=0.154  Sum_probs=100.6

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      ..+..+..|+.+.+..+ +..+...    .+..+..|+.+.+..+ ++......+.++.+|+.+.+..+ +. .++...|
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~----~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF  282 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDG----AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLC  282 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTT----TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTT
T ss_pred             cccccccccceeeeccc-eeEEccc----cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccc
Confidence            35566778888887654 4444333    7788899999998765 55445567888899999998654 43 3555678


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCC
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLT  276 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  276 (299)
                      ..+.+|+.+.+.++  ... .++...|.+|.+|+.+.+..+ ++.+.  .+.++++|+.+.+..+ ++..-..+|.+++
T Consensus       283 ~~c~~L~~i~l~~~--~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          283 SGCSNLTKVVMDNS--AIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTCTTCCEEEECCT--TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccccccccccc--ccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            89999999999877  333 344478889999999999754 54433  5888899999888654 4433344555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.06  E-value=0.0014  Score=49.03  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=16.0

Q ss_pred             CCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCcc
Q 022302          231 NLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYY  264 (299)
Q Consensus       231 ~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l  264 (299)
                      +|++|+|++|+|+.++.  +..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            34555555555544432  34444455555555444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.55  E-value=0.0062  Score=45.42  Aligned_cols=34  Identities=26%  Similarity=0.189  Sum_probs=14.4

Q ss_pred             CCEEECCCCCCCccchHhhccCCCCcEEeCCCCc
Q 022302          156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS  189 (299)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  189 (299)
                      |++|+|++|+|+...+..|..+++|++|+|++|.
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4444444444443333334444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	299
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	6e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 3e-17
 Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 34/190 (17%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           + +++       L  L L GN    I       +  SL  L  L+L +N  ++  L  L+
Sbjct: 209 ISDITPLGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISN--LAPLS 260

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLAN-------------------LRYLQVLDLSGNFNI 216
            LT LT L L  N I       GL                     L+ L  L L  N NI
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NI 319

Query: 217 TSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLT 276
           +  S     +++LT L++L   +  ++ +  LA L N+  L   +N    S L  LANLT
Sbjct: 320 SDIS----PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQI--SDLTPLANLT 373

Query: 277 NLQVLDLSDN 286
            +  L L+D 
Sbjct: 374 RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
             +L  +  L     GI +I G+  L NL  ++ S N    + +  L NLT L  + +++
Sbjct: 40  QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMNN 97

Query: 286 NQN 288
           NQ 
Sbjct: 98  NQI 100

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 20/173 (11%)

Query: 129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN 188
           + L    N  + I       +      L  L+L  N   D  +  L +LT+LT L L++N
Sbjct: 200 ESLIATNNQISDITPLGILTN------LDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 189 SIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL 248
            I        L+ L  L  L L  N       L       LT L  L+L    +  I  +
Sbjct: 252 QISNL---APLSGLTKLTELKLGANQISNISPLA-----GLTALTNLELNENQLEDISPI 303

Query: 249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ--NLTTLGKPLNLR 299
           + LKNL  L L +N    S +  +++LT LQ L  ++N+  ++++L    N+ 
Sbjct: 304 SNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFANNKVSDVSSLANLTNIN 354

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
           L      +L   ++  + ++  L  +  L          I S      G+  L NL +++
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTL---QADRL-GIKSID----GVEYLNNLTQIN 72

Query: 237 LGSCGITTIQGLAKLKNLEALDLSYNYYIH 266
             +  +T I  L  L  L  + ++ N    
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILMNNNQIAD 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 13/95 (13%)

Query: 205 LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI------QGLAKLKNLEALD 258
           +Q LD+     ++      L L  L   + + L  CG+T          L     L  L+
Sbjct: 4   IQSLDIQCE-ELSDARWAEL-LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 259 LSYNYYIHSSLEGLA-----NLTNLQVLDLSDNQN 288
           L  N      +  +          +Q L L +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 3e-07
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 10/97 (10%)

Query: 179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLG--LANLTNLKKLD 236
            + +L +    +  +R  + L  L+  QV+ L     +T      +   L     L +L+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELN 61

Query: 237 LGSCGIT--TIQGLAKL-----KNLEALDLSYNYYIH 266
           L S  +    +  + +        ++ L L       
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 228 NLTNLKKLDLGSCGITTI------QGLAKLKNLEALDLSYNYYIHSSLEGLA-----NLT 276
             + L+ L L  C ++          L    +L  LDLS N    + +  L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 277 NLQVLDLSDNQ 287
            L+ L L D  
Sbjct: 427 LLEQLVLYDIY 437

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 5e-05
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND----SILPYLNTLTSLTT 182
           ++Q LD+     +   + R  +    L+Q +++ L D    +     I   L    +L  
Sbjct: 3   DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 183 LILSDNSIEGSRTKQGLANLRY----LQVLDLSGNFN 215
           L L  N +        L  L+     +Q L L     
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 173 YLNTLTSLTTLILSDNSIEGSRTK---QGLANLRYLQVLDLSGNFNITSGSLTRLGLA-- 227
                + L  L L+D  +  S        L     L+ LDLS N  +    + +L  +  
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVR 422

Query: 228 -NLTNLKKLDLGSCGITTI 245
                L++L L     +  
Sbjct: 423 QPGCLLEQLVLYDIYWSEE 441

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 7e-04
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-----NT 176
             P   L+ L L     +    +    +  +   L+ L+L +N   D+ +  L       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 177 LTSLTTLILSDNSIEG 192
              L  L+L D     
Sbjct: 425 GCLLEQLVLYDIYWSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 17/101 (16%)

Query: 201 NLRYLQVLDLSGNFNITSGSLTRLG--LANLTNLKKLDLGSCGIT--TIQGLAK-----L 251
               L+VL L+   +++  S + L   L    +L++LDL +  +    I  L +      
Sbjct: 367 PGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 252 KNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
             LE L L   Y+     + L  L         D  +L  +
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQAL-------EKDKPSLRVI 459

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 39/180 (21%), Positives = 58/180 (32%), Gaps = 24/180 (13%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
              LDL  N  T I +      F +LK L  L L +N  +         L  L  L LS 
Sbjct: 33  TALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 188 NSIEG-------------------SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN 228
           N ++                    ++ ++ + N     ++   G   + S  +       
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 229 LTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN 288
           +  L  + +    ITTI       +L  L L  N         L  L NL  L LS N  
Sbjct: 149 MKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 217 TSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLAN 274
           +   L ++      +   LDL +  IT I+      LKNL  L L  N     S    A 
Sbjct: 18  SDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77

Query: 275 LTNLQVLDLSDNQ 287
           L  L+ L LS NQ
Sbjct: 78  LVKLERLYLSKNQ 90

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 14/189 (7%)

Query: 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT 176
           +  S+F+   ++  ++L  N            +F  +K+L  + + D             
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLKSS--GIENGAFQGMKKLSYIRIADTNITTI---PQGL 169

Query: 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD 236
             SLT L L  N I        L  L  L  L LS N      + +     +L   +   
Sbjct: 170 PPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR--ELHL 226

Query: 237 LGSCGITTIQGLAKLKNLEALDLSYNY------YIHSSLEGLANLTNLQVLDLSDNQNLT 290
             +  +    GLA  K ++ + L  N                    +   + L  N    
Sbjct: 227 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286

Query: 291 TLGKPLNLR 299
              +P   R
Sbjct: 287 WEIQPSTFR 295

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 33/155 (21%), Positives = 49/155 (31%), Gaps = 48/155 (30%)

Query: 36  CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDD-WEGVKCNATTRRV 94
           C   ++ ALL+IK           +   L SW+      ++DCC+  W GV C+  T+  
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLP-----TTDCCNRTWLGVLCDTDTQTY 50

Query: 95  MQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK 154
                                            +  LDL G      Y      S  +L 
Sbjct: 51  --------------------------------RVNNLDLSGLNLPKPYPIP--SSLANLP 76

Query: 155 QLKMLNLGDN-FFNDSILPYLNTLTSLTTLILSDN 188
            L  L +G        I P +  LT L  L ++  
Sbjct: 77  YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 236 DLGSCGITTI--QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
           DL +  I     QGL +LK L +L++S+N  +   +    NL    V   ++N+ L   G
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQGGNLQRFDVSAYANNKCLC--G 306

Query: 294 KPL 296
            PL
Sbjct: 307 SPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 160 NLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG 219
           +L +N    ++   L  L  L +L +S N++ G   +    NL+   V   + N  +   
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGS 307

Query: 220 SL 221
            L
Sbjct: 308 PL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 5/57 (8%)

Query: 132 DLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN 188
           DL  N   G            LK L  LN+  N     I P    L        ++N
Sbjct: 250 DLRNNRIYGTLP----QGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANN 301

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
           LANL+ L  L      I+ I  LA L NL  + L  N    S +  LAN +NL ++ L++
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 7e-07
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 227 ANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
             L N  K+  G   +T     A L  +  L         +++EG+  L NL  L+L DN
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDN 73

Query: 287 Q 287
           Q
Sbjct: 74  Q 74

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDL 259
             L     +    + N+T      +  A+L  +  L     G+TTI+G+  L NL  L+L
Sbjct: 16  PALANAIKIAAGKS-NVTD----TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLEL 70

Query: 260 SYNYYIH 266
             N    
Sbjct: 71  KDNQITD 77

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 225 GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLS 260
            LA+L NL ++ L +  I+ +  LA   NL  + L+
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 115 LLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL 174
           L L+++       L  L        G  +        +L +L  L   DN  +D  +  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPL 191

Query: 175 NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
            +L +L  + L +N I        LAN   L ++ L+
Sbjct: 192 ASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 164 NFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTR 223
                S L  L  L+ LTTL   DN I        LA+L  L  + L  N  I+  S   
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNN-QISDVS--- 211

Query: 224 LGLANLTNLKKLDL 237
             LAN +NL  + L
Sbjct: 212 -PLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLS 211
           +L     +  G +   D++      L  +TTL      +    T +G+  L  L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 212 GNF 214
            N 
Sbjct: 72  DNQ 74

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 227 ANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
             L    K  LG   +T       L  +  L          S++G+  L NL  ++ S+N
Sbjct: 15  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNN 72

Query: 287 QN 288
           Q 
Sbjct: 73  QL 74

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDL 259
             L       L    N+T      +   +L  +  L     GI +I G+  L NL  ++ 
Sbjct: 15  TALAEKMKTVLGKT-NVTD----TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF 69

Query: 260 SYNYYIH 266
           S N    
Sbjct: 70  SNNQLTD 76

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 239 SCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL 281
           S  +T ++ LA L  LE LD+S N    S +  LA LTNL+ L
Sbjct: 159 SNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 225 GLANLTNLKKLDLGSCGITTIQGLAKLKNLEAL 257
            LANLT L++LD+ S  ++ I  LAKL NLE+L
Sbjct: 167 PLANLTTLERLDISSNKVSDISVLAKLTNLESL 199

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG 241
            L L+   +        L  L  +  LDLS N            LA L  L+ L      
Sbjct: 2   VLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 242 ITTIQGLAKLKNLEALDLSYNYYIH-SSLEGLANLTNLQVLDLSDNQ 287
           +  + G+A L  L+ L L  N     ++++ L +   L +L+L  N 
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 101

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 17/134 (12%)

Query: 129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN 188
           + L L     T +           L  +  L+L  N            L +L  L +   
Sbjct: 1   RVLHLAHKDLTVL------CHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQA 50

Query: 189 SIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL 248
           S        G+ANL  LQ L L  N  +   +  +  L +   L  L+L    +   +G+
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNN-RLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGI 108

Query: 249 -----AKLKNLEAL 257
                  L ++ ++
Sbjct: 109 QERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN 175
           L  +        +  LDL  N    +       +  +L+ L++L    +      +  + 
Sbjct: 10  LTVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQA--SDNALENVDGVA 62

Query: 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN-LTNLKK 234
            L  L  L+L +N ++ S   Q L +   L +L+L GN ++      +  LA  L ++  
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSS 121

Query: 235 L 235
           +
Sbjct: 122 I 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 233 KKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLD 282
           + L L    +T +  L +L  +  LDLS+N  + +    LA L  L+VL 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQ 49

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 7e-06
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLS 260
               L+ L++S N       L  L  A    L++L      +  +  L   +NL+ L + 
Sbjct: 282 LPPSLEELNVSNN------KLIELP-ALPPRLERLIASFNHLAEVPEL--PQNLKQLHVE 332

Query: 261 YNYYIHSSLEGLANLTNLQV 280
           YN  +    +   ++ +L++
Sbjct: 333 YN-PLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 228 NLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
              +L++L++ +  +  +  L     LE L  S+N+   + +  L    NL+ L +  N 
Sbjct: 282 LPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHL--AEVPEL--PQNLKQLHVEYNP 335

Query: 288 NLTTL 292
            L   
Sbjct: 336 -LREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181
                +    DLP    +  + + + + F  L +L       N  ++ I    +   SL 
Sbjct: 228 ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 287

Query: 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG 241
            L +S+N +      +  A    L+ L  S N       L  +      NLK+L +    
Sbjct: 288 ELNVSNNKLI-----ELPALPPRLERLIASFN------HLAEVP-ELPQNLKQLHVEYNP 335

Query: 242 ITTIQGLAKLKNLEALDLS 260
           +     +   +++E L ++
Sbjct: 336 LREFPDI--PESVEDLRMN 352

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 228 NLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
                 K +L    +T      +L +++ +  + +     S++G+  L N+  L L+ N+
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNK 79

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 41/196 (20%), Positives = 64/196 (32%), Gaps = 46/196 (23%)

Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184
           F E  + +L     T         +   L  +  +   ++      +  +  L ++T L 
Sbjct: 23  FAETIKDNLKKKSVTDAV------TQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 185 LSDNSIEGSRTKQGLANLRYLQV------------------------------------L 208
           L+ N +   +    L NL +L +                                     
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSS 268
            L   +   +       L+ LT L  L L    I+ I  LA L  L+ L LS N+   S 
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI--SD 192

Query: 269 LEGLANLTNLQVLDLS 284
           L  LA L NL VL+L 
Sbjct: 193 LRALAGLKNLDVLELF 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 9/118 (7%)

Query: 181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC 240
            TL L+  ++    T + L+  + +       +F             +   ++ +DL + 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFM----DQPLAEHFSPFRVQHMDLSNS 56

Query: 241 GITTIQG---LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295
            I        L++   L+ L L         +  LA  +NL  L+LS     +     
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 129 QRLDLPGNWFTGIYENRAYDSFGSL--KQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186
           Q LDL G            D  G L  + +       +F +  +  +  +   +  + LS
Sbjct: 3   QTLDLTGKNLHP-------DVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLS 54

Query: 187 DNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC 240
           ++ IE S     L+    LQ L L G   ++   +    LA  +NL +L+L  C
Sbjct: 55  NSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVN--TLAKNSNLVRLNLSGC 105

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 28/137 (20%), Positives = 44/137 (32%), Gaps = 16/137 (11%)

Query: 155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF 214
             + L+L     +D  L   N    L        ++          N+  L  L+LS N 
Sbjct: 23  SQQALDL-KGLRSDPDLVAQNIDVVLNRRSSMAATLRII-----EENIPELLSLNLS-NN 75

Query: 215 NITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNL--EALDLSYNYYIHSSLEG- 271
            +         +    NLK L+L    + + + L K+K L  E L L  N    +  +  
Sbjct: 76  RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS 135

Query: 272 ------LANLTNLQVLD 282
                       L  LD
Sbjct: 136 TYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 11/130 (8%)

Query: 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
           ++     +   L    +   R+   L       VL+   +   T   +      N+  L 
Sbjct: 16  MSKRYDGSQQALDLKGL---RSDPDLVAQNIDVVLNRRSSMAATLRIIEE----NIPELL 68

Query: 234 KLDLGSCGITTIQGL----AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289
            L+L +  +  +  +     K  NL+ L+LS N               L+ L L  N   
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

Query: 290 TTLGKPLNLR 299
            T        
Sbjct: 129 DTFRDQSTYI 138

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 11/53 (20%), Positives = 15/53 (28%)

Query: 240 CGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292
                            LD+S          GL NL  L+     + + L TL
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 205 LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYY 264
            + ++L G   I         L+ L   K L L +  I  I  L+ ++NL  L L  N  
Sbjct: 25  AEKVELHGM--IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI 82

Query: 265 IH 266
             
Sbjct: 83  KK 84

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 39/165 (23%), Positives = 51/165 (30%), Gaps = 9/165 (5%)

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD 187
            QR+ L GN  + +       SF + + L +L L  N            L  L  L LSD
Sbjct: 34  SQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 188 NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ- 246
           N+   S        L  L  L L          L       L  L+ L L    +  +  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE---LGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 247 -GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290
                L NL  L L  N            L +L  L L  N+   
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 228 NLTNLKKLDLGSCGITTI-QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
            + +  +++     +T +   L K  +   L LS N     SL  L   T L  L+L   
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 287 QN 288
           + 
Sbjct: 66  EL 67

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT 244
           L+   IE +       N    + LDL G   I    +  LG A L     +D     I  
Sbjct: 3   LTAELIEQAAQ---YTNAVRDRELDLRGY-KIPV--IENLG-ATLDQFDAIDFSDNEIRK 55

Query: 245 IQGLAKLKNLEALDLSYNYYIH 266
           + G   L+ L+ L ++ N    
Sbjct: 56  LDGFPLLRRLKTLLVNNNRICR 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.28
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.22
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.08
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.61
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.66

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4.7e-37  Score=268.29  Aligned_cols=234  Identities=27%  Similarity=0.384  Sum_probs=186.9

Q ss_pred             cchHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCceEecCCC--CcEEEeeeCc-cccccccCC
Q 022302           35 ACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCD-DWEGVKCNATT--RRVMQLSLNE-TIKFNYSSG  110 (299)
Q Consensus        35 ~~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~-~w~gv~C~~~~--~~v~~l~l~~-~l~~~~~~~  110 (299)
                      -|.++|++||++||+++.++       ..+.+|..     ++|||. .|.||+|+...  .||++|+|++ ++.+..   
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~-------~~l~sW~~-----~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~---   66 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNP-------TTLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY---   66 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC-------GGGTTCCT-----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCE---
T ss_pred             CCCHHHHHHHHHHHHHCCCC-------CcCCCCCC-----CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCC---
Confidence            38999999999999999877       46899987     578983 49999998643  4899999998 666521   


Q ss_pred             CCccccccccccCCCCCccEEeCCC-CCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCc
Q 022302          111 SGSALLLNMSLFHPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS  189 (299)
Q Consensus       111 ~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  189 (299)
                            ..++.++++++|++|+|++ |.++|.+|.    .++++++|++|++++|++.+..+..+..+.+|+++++++|.
T Consensus        67 ------~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~----~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~  136 (313)
T d1ogqa_          67 ------PIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             ------ECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             ------CCChHHhcCcccccccccccccccccccc----ccccccccchhhhccccccccccccccchhhhccccccccc
Confidence                  1245788899999999986 788888887    88899999999999999888777778888888888888888


Q ss_pred             CCCcchhhhhcCCCCCCEEECCCCcCCCCCccch----------------------------------------------
Q 022302          190 IEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTR----------------------------------------------  223 (299)
Q Consensus       190 l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~----------------------------------------------  223 (299)
                      +.+.+|. .+..++.++++++++|  .+.+.+|.                                              
T Consensus       137 ~~~~~p~-~l~~l~~L~~l~l~~n--~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~  213 (313)
T d1ogqa_         137 LSGTLPP-SISSLPNLVGITFDGN--RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA  213 (313)
T ss_dssp             EESCCCG-GGGGCTTCCEEECCSS--CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECC
T ss_pred             ccccCch-hhccCcccceeecccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8777765 6788888888888887  55555542                                              


Q ss_pred             -hhhccCCCCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          224 -LGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       224 -~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                       ..+..+++++.+++++|.+++.+ .+..+++|+.|+|++|+++|.+|+.++++++|++|+|++|+++|.||+.-
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~  288 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             cccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence             22233455566666666655443 36778899999999999999999999999999999999999999999753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.3e-20  Score=159.53  Aligned_cols=174  Identities=27%  Similarity=0.267  Sum_probs=133.1

Q ss_pred             cEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch
Q 022302           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (299)
Q Consensus        93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  171 (299)
                      .++.|+|++ .+.+           +++..|.++++|++|++++|.++.. +     .++.+++|++|++++|++++ .+
T Consensus        32 ~l~~L~Ls~N~i~~-----------l~~~~f~~l~~L~~L~L~~N~l~~l-~-----~~~~l~~L~~L~Ls~N~l~~-~~   93 (266)
T d1p9ag_          32 DTTILHLSENLLYT-----------FSLATLMPYTRLTQLNLDRAELTKL-Q-----VDGTLPVLGTLDLSHNQLQS-LP   93 (266)
T ss_dssp             TCCEEECTTSCCSE-----------EEGGGGTTCTTCCEEECTTSCCCEE-E-----CCSCCTTCCEEECCSSCCSS-CC
T ss_pred             CCCEEECcCCcCCC-----------cCHHHhhcccccccccccccccccc-c-----cccccccccccccccccccc-cc
Confidence            455666665 3333           4456678888888888888888754 3     35678888888888888875 45


Q ss_pred             HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--cc
Q 022302          172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LA  249 (299)
Q Consensus       172 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~  249 (299)
                      ..+..+++|++|++++|.+.. ++...+..+.++++|++++|  .+....+ ..+..+++++.+++++|++++.+.  +.
T Consensus        94 ~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~L~l~~n--~l~~l~~-~~~~~l~~l~~l~l~~N~l~~~~~~~~~  169 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN--ELKTLPP-GLLTPTPKLEKLSLANNNLTELPAGLLN  169 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTS--CCCCCCT-TTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             cccccccccccccccccccce-eecccccccccccccccccc--ccceecc-ccccccccchhcccccccccccCccccc
Confidence            567788888888888888875 44446778888888888888  5554433 667778889999999998887764  77


Q ss_pred             CCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCC
Q 022302          250 KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       250 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  289 (299)
                      .+++|++|+|++|+++ .+|+.+..+++|+.|+|++|++.
T Consensus       170 ~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            8888999999999888 78888888888999999988864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.8e-20  Score=156.67  Aligned_cols=159  Identities=27%  Similarity=0.227  Sum_probs=139.6

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      +++++|+|++|.+++..+.    .|.++++|++|+|++|+++. ++ .++.+++|++|++++|++++ .+. .+..+++|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~-~~~~l~~L  102 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPAL  102 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCC-CTTTCTTC
T ss_pred             cCCCEEECcCCcCCCcCHH----Hhhccccccccccccccccc-cc-cccccccccccccccccccc-ccc-cccccccc
Confidence            4799999999999998776    89999999999999999985 44 35789999999999999985 454 68999999


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL  283 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  283 (299)
                      ++|++++|  ......+ ..+..+.++++|++++|.++..+.  +..+++++.+++++|++++..++.+..+++|++|+|
T Consensus       103 ~~L~l~~~--~~~~~~~-~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~L  179 (266)
T d1p9ag_         103 TVLDVSFN--RLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (266)
T ss_dssp             CEEECCSS--CCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccc--ccceeec-cccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeec
Confidence            99999999  6655444 677889999999999999998764  677899999999999999888888999999999999


Q ss_pred             CCCCCCCccCCCc
Q 022302          284 SDNQNLTTLGKPL  296 (299)
Q Consensus       284 ~~N~l~g~ip~~~  296 (299)
                      ++|+|+ .||+.+
T Consensus       180 s~N~L~-~lp~~~  191 (266)
T d1p9ag_         180 QENSLY-TIPKGF  191 (266)
T ss_dssp             CSSCCC-CCCTTT
T ss_pred             ccCCCc-ccChhH
Confidence            999998 788754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.8e-19  Score=153.85  Aligned_cols=183  Identities=25%  Similarity=0.245  Sum_probs=125.0

Q ss_pred             EEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhh---------------------HHhhc
Q 022302           94 VMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRA---------------------YDSFG  151 (299)
Q Consensus        94 v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------------------~~~l~  151 (299)
                      ++.|++++ +++.           +++..|.++++|++|++++|.+....+...                     ...+.
T Consensus        34 ~~~L~Ls~N~i~~-----------i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~  102 (284)
T d1ozna_          34 SQRIFLHGNRISH-----------VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH  102 (284)
T ss_dssp             CSEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CCEEECcCCcCCC-----------CCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            45666666 4433           455678888999999999888766544310                     12455


Q ss_pred             CCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCC
Q 022302          152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN  231 (299)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~  231 (299)
                      ++++|++|++++|.+....+..+....+|+.+++++|++++ +++..|..+++|++|++++|  .+.+..+ ..+..+++
T Consensus       103 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~-i~~~~f~~~~~L~~L~l~~N--~l~~l~~-~~f~~l~~  178 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGN--RISSVPE-RAFRGLHS  178 (284)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS--CCCEECT-TTTTTCTT
T ss_pred             ccccCCEEecCCcccccccccccchhcccchhhhccccccc-cChhHhccccchhhcccccC--cccccch-hhhccccc
Confidence            66777777777777766556666667777777777777764 44446677777777777777  5544333 56677777


Q ss_pred             CcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCc
Q 022302          232 LKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTT  291 (299)
Q Consensus       232 L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~  291 (299)
                      |+++++++|++++..  .+..+++|++|++++|.+.+..++.+..+++|++|++++|++...
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            777777777777654  367777777777777777776677777777777777777776543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.81  E-value=3.1e-20  Score=160.73  Aligned_cols=162  Identities=27%  Similarity=0.314  Sum_probs=137.3

Q ss_pred             CCccEEeCCCCCCCCc--chhhhHHhhcCCCCCCEEECCC-CCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302          126 EELQRLDLPGNWFTGI--YENRAYDSFGSLKQLKMLNLGD-NFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~--~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  202 (299)
                      .+++.|+|++|.+.+.  +|+    .++++++|++|+|++ |.++|.+|..++++++|++|+|++|++.+..+. .+..+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~----~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~  124 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPS----SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQI  124 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG----GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGC
T ss_pred             EEEEEEECCCCCCCCCCCCCh----HHhcCccccccccccccccccccccccccccccchhhhccccccccccc-cccch
Confidence            4689999999999984  566    899999999999986 889999999999999999999999999975554 78999


Q ss_pred             CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc------------------------------------
Q 022302          203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ------------------------------------  246 (299)
Q Consensus       203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------------------------------------  246 (299)
                      .+|+.+++++|  ...+.+| ..+..+++++++++++|.+++..                                    
T Consensus       125 ~~L~~l~l~~N--~~~~~~p-~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~  201 (313)
T d1ogqa_         125 KTLVTLDFSYN--ALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF  201 (313)
T ss_dssp             TTCCEEECCSS--EEESCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSE
T ss_pred             hhhcccccccc--cccccCc-hhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999  7778888 78899999999999999876421                                    


Q ss_pred             --------------cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          247 --------------GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       247 --------------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                                    .+..+++++.+++++|.+++.+| .++.+++|+.|++++|+++|.+|+++
T Consensus       202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l  264 (313)
T d1ogqa_         202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHH
Confidence                          02344567777888887776554 57888999999999999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1.7e-18  Score=148.97  Aligned_cols=186  Identities=25%  Similarity=0.331  Sum_probs=116.4

Q ss_pred             CCCCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHH
Q 022302           79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD  148 (299)
Q Consensus        79 c~~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  148 (299)
                      | .|.+|.|...         ...++.|++++ +++.           ++...|.++++|++|++++|.+....|.    
T Consensus        10 c-~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~-----------l~~~~f~~l~~L~~L~l~~n~~~~i~~~----   73 (305)
T d1xkua_          10 C-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----------IKDGDFKNLKNLHTLILINNKISKISPG----   73 (305)
T ss_dssp             E-ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----------BCTTTTTTCTTCCEEECCSSCCCCBCTT----
T ss_pred             e-cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCC-----------cChhHhhccccccccccccccccccchh----
Confidence            5 8999999752         23466777777 4443           4445677788888888888888877665    


Q ss_pred             hhcCCCCCCEEECCCCCCCccchHh------------------------------------------------hccCCCC
Q 022302          149 SFGSLKQLKMLNLGDNFFNDSILPY------------------------------------------------LNTLTSL  180 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~n~l~~~~p~~------------------------------------------------l~~l~~L  180 (299)
                      .|..+++|++|++++|+++. +|..                                                +..+++|
T Consensus        74 ~f~~l~~L~~L~l~~n~l~~-l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L  152 (305)
T d1xkua_          74 AFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  152 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             hhhCCCccCEecccCCccCc-CccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccccccc
Confidence            67778888888887776653 1211                                                1223334


Q ss_pred             cEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEe
Q 022302          181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALD  258 (299)
Q Consensus       181 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~  258 (299)
                      +++++++|.+.. ++.   ..+++|++|++++|  ...+..+ ..+..++.+++|++++|.+++.+.  +..+++|++|+
T Consensus       153 ~~l~l~~n~l~~-l~~---~~~~~L~~L~l~~n--~~~~~~~-~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         153 SYIRIADTNITT-IPQ---GLPPSLTELHLDGN--KITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             CEEECCSSCCCS-CCS---SCCTTCSEEECTTS--CCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             CccccccCCccc-cCc---ccCCccCEEECCCC--cCCCCCh-hHhhccccccccccccccccccccccccccccceeee
Confidence            444444443331 221   11344555555555  3333333 556666777777777777766542  56677777777


Q ss_pred             CCCCccCccCcccccCCCCCCEEecCCCCCC
Q 022302          259 LSYNYYIHSSLEGLANLTNLQVLDLSDNQNL  289 (299)
Q Consensus       259 L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  289 (299)
                      |++|+++ .+|+.+.++++|++|++++|+|+
T Consensus       226 L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         226 LNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccccccc-ccccccccccCCCEEECCCCccC
Confidence            7777777 56667777777777777777776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.2e-18  Score=144.64  Aligned_cols=161  Identities=24%  Similarity=0.209  Sum_probs=116.1

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc-------------------------hHhhccCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI-------------------------LPYLNTLTSL  180 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-------------------------p~~l~~l~~L  180 (299)
                      +.+++|+|++|+++...+.    .|.++++|++|++++|.+....                         +..+.++++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECcCCcCCCCCHH----HhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC
Confidence            4689999999999988776    7999999999999998876443                         3344556667


Q ss_pred             cEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEe
Q 022302          181 TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALD  258 (299)
Q Consensus       181 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~  258 (299)
                      ++|++++|.+.. ++...+....+|+.+++++|  .+.+..+ ..+..+++|+.|++++|+++..++  +..+++|+.++
T Consensus       108 ~~L~l~~n~~~~-~~~~~~~~~~~L~~l~l~~N--~l~~i~~-~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         108 HTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDN--ALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             CEEECTTSCCCC-CCTTTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEecCCccccc-ccccccchhcccchhhhccc--cccccCh-hHhccccchhhcccccCcccccchhhhccccccchhh
Confidence            777777766653 33335566666777777776  5543333 566677777777777777776543  66777788888


Q ss_pred             CCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302          259 LSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       259 L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      +++|++++..|..|..+++|++|++++|++.+..|+
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             hhhccccccChhHhhhhhhccccccccccccccccc
Confidence            888888777777778888888888888887765443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=3.5e-18  Score=139.37  Aligned_cols=162  Identities=34%  Similarity=0.377  Sum_probs=132.2

Q ss_pred             cEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch
Q 022302           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (299)
Q Consensus        93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  171 (299)
                      .++.+++++ .+..             ...+..+++|++|++++|.+++..      .+..+++|++|++++|++++ +|
T Consensus        47 ~L~~L~l~~~~i~~-------------l~~l~~l~~L~~L~L~~n~i~~l~------~~~~l~~L~~L~l~~n~i~~-l~  106 (210)
T d1h6ta2          47 SIDQIIANNSDIKS-------------VQGIQYLPNVTKLFLNGNKLTDIK------PLANLKNLGWLFLDENKVKD-LS  106 (210)
T ss_dssp             TCCEEECTTSCCCC-------------CTTGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCC-GG
T ss_pred             CccEEECcCCCCCC-------------chhHhhCCCCCEEeCCCccccCcc------ccccCccccccccccccccc-cc
Confidence            466677766 4433             224677899999999999998864      35789999999999999985 44


Q ss_pred             HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCC
Q 022302          172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKL  251 (299)
Q Consensus       172 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l  251 (299)
                       .+..+++|++|++++|.+.. ++  .+..++.++.+++++|  ...+.   ..+..+++|+++++++|++++.+++..+
T Consensus       107 -~l~~l~~L~~L~l~~~~~~~-~~--~l~~l~~l~~l~~~~n--~l~~~---~~~~~l~~L~~l~l~~n~l~~i~~l~~l  177 (210)
T d1h6ta2         107 -SLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNN--KITDI---TVLSRLTKLDTLSLEDNQISDIVPLAGL  177 (210)
T ss_dssp             -GGTTCTTCCEEECTTSCCCC-CG--GGGGCTTCCEEECCSS--CCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             -cccccccccccccccccccc-cc--cccccccccccccccc--ccccc---ccccccccccccccccccccccccccCC
Confidence             58889999999999998874 44  5888999999999999  65543   3467889999999999999988889999


Q ss_pred             CCCCEEeCCCCccCccCcccccCCCCCCEEecCC
Q 022302          252 KNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD  285 (299)
Q Consensus       252 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~  285 (299)
                      ++|++|++++|+++ .+| .+.++++|++|+|++
T Consensus       178 ~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         178 TKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             CCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            99999999999998 455 589999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=6.1e-18  Score=136.75  Aligned_cols=149  Identities=33%  Similarity=0.404  Sum_probs=94.1

Q ss_pred             CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCC
Q 022302          124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR  203 (299)
Q Consensus       124 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  203 (299)
                      .++++++|++++|.++.. +     .+..+++|++|++++|++++..|  ++++++|++|++++|.+.. ++  .+..++
T Consensus        38 ~l~~l~~L~l~~~~i~~l-~-----~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~--~l~~l~  106 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI-D-----GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT--PLANLT  106 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCT
T ss_pred             HhcCCCEEECCCCCCCCc-c-----ccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc--cccccc
Confidence            345666777777766653 1     45566777777777777665332  6667777777777776653 33  356667


Q ss_pred             CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302          204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL  283 (299)
Q Consensus       204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  283 (299)
                      .|+.|++++|  .....   ..+..+++|+.|++++|++...+.+..+++|+.|++.+|++++ ++ .++++++|++|++
T Consensus       107 ~L~~L~l~~~--~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~l  179 (199)
T d2omxa2         107 NLTGLTLFNN--QITDI---DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDI  179 (199)
T ss_dssp             TCSEEECCSS--CCCCC---GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEEC
T ss_pred             cccccccccc--ccccc---cccchhhhhHHhhhhhhhhcccccccccccccccccccccccC-Cc-cccCCCCCCEEEC
Confidence            7777777666  43322   2355666777777777776666666666777777777777664 22 3666777777777


Q ss_pred             CCCCCCC
Q 022302          284 SDNQNLT  290 (299)
Q Consensus       284 ~~N~l~g  290 (299)
                      ++|++++
T Consensus       180 s~N~i~~  186 (199)
T d2omxa2         180 SSNKVSD  186 (199)
T ss_dssp             CSSCCCC
T ss_pred             CCCCCCC
Confidence            7776654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2.5e-17  Score=133.08  Aligned_cols=159  Identities=33%  Similarity=0.402  Sum_probs=132.2

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      .+++.+++.+ ++..             .+.+..+++|++|++++|.+++..      .+.++++|++|++++|.+... 
T Consensus        40 ~~l~~L~l~~~~i~~-------------l~~l~~l~nL~~L~Ls~N~l~~~~------~l~~l~~L~~L~l~~n~~~~~-   99 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-------------IDGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADI-   99 (199)
T ss_dssp             TTCCEEECTTSCCCC-------------CTTGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCCC-
T ss_pred             cCCCEEECCCCCCCC-------------ccccccCCCcCcCccccccccCcc------cccCCcccccccccccccccc-
Confidence            3567788877 4433             234678999999999999998864      478999999999999998753 


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK  250 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~  250 (299)
                      + .+..+++|++|++++|.+.. ++  .+..+++|+.|++++|  .+.. +  ..+..+++|+.|++.+|++++.+++..
T Consensus       100 ~-~l~~l~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~n--~l~~-~--~~l~~~~~L~~L~l~~n~l~~l~~l~~  170 (199)
T d2omxa2         100 T-PLANLTNLTGLTLFNNQITD-ID--PLKNLTNLNRLELSSN--TISD-I--SALSGLTSLQQLNFSSNQVTDLKPLAN  170 (199)
T ss_dssp             G-GGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSS--CCCC-C--GGGTTCTTCSEEECCSSCCCCCGGGTT
T ss_pred             c-cccccccccccccccccccc-cc--ccchhhhhHHhhhhhh--hhcc-c--ccccccccccccccccccccCCccccC
Confidence            3 48899999999999999875 33  4788999999999999  5543 3  357889999999999999999988999


Q ss_pred             CCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302          251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVL  281 (299)
Q Consensus       251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  281 (299)
                      +++|++|++++|++++ ++ .++.+++|++|
T Consensus       171 l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         171 LTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            9999999999999985 44 58889999876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=4.6e-17  Score=132.66  Aligned_cols=152  Identities=30%  Similarity=0.349  Sum_probs=130.4

Q ss_pred             CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCC
Q 022302          124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR  203 (299)
Q Consensus       124 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  203 (299)
                      .+..|++|++++|.+....      .+..+++|++|++++|++++..  .++.+++|++|++++|++++ ++  .+..++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~------~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~--~l~~l~  112 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS--SLKDLK  112 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG--GGTTCT
T ss_pred             HhcCccEEECcCCCCCCch------hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc--cccccc
Confidence            3568999999999998753      4678999999999999998743  36889999999999999985 55  488999


Q ss_pred             CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302          204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL  283 (299)
Q Consensus       204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  283 (299)
                      +|+.|++++|  .... +  ..+..+++++.+++++|.+++...+..+++|+.+++++|++++ +++ +.++++|++|++
T Consensus       113 ~L~~L~l~~~--~~~~-~--~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~L  185 (210)
T d1h6ta2         113 KLKSLSLEHN--GISD-I--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYL  185 (210)
T ss_dssp             TCCEEECTTS--CCCC-C--GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             cccccccccc--cccc-c--ccccccccccccccccccccccccccccccccccccccccccc-ccc-ccCCCCCCEEEC
Confidence            9999999999  5543 2  3578899999999999999998888899999999999999985 443 899999999999


Q ss_pred             CCCCCCCccCC
Q 022302          284 SDNQNLTTLGK  294 (299)
Q Consensus       284 ~~N~l~g~ip~  294 (299)
                      ++|+++. +|.
T Consensus       186 s~N~i~~-l~~  195 (210)
T d1h6ta2         186 SKNHISD-LRA  195 (210)
T ss_dssp             CSSCCCB-CGG
T ss_pred             CCCCCCC-Chh
Confidence            9999974 653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.4e-16  Score=131.08  Aligned_cols=168  Identities=29%  Similarity=0.328  Sum_probs=131.0

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI  170 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  170 (299)
                      ..++.+++.+ ++..             .+.+.++++|++|++++|.+.+..      .+..+++|+++++++|.++. +
T Consensus        41 ~~L~~L~l~~~~i~~-------------l~~l~~l~~L~~L~ls~n~i~~~~------~l~~l~~l~~l~~~~n~~~~-i  100 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-------------IEGVQYLNNLIGLELKDNQITDLA------PLKNLTKITELELSGNPLKN-V  100 (227)
T ss_dssp             HTCCEEECTTSCCCC-------------CTTGGGCTTCCEEECCSSCCCCCG------GGTTCCSCCEEECCSCCCSC-C
T ss_pred             CCcCEEECCCCCCCc-------------chhHhcCCCCcEeecCCceeeccc------cccccccccccccccccccc-c
Confidence            3567777776 4433             234778899999999999988764      47888999999999998874 3


Q ss_pred             hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302          171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK  250 (299)
Q Consensus       171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~  250 (299)
                       ..+..+++|++++++++...+. +  .+...+.++.+.++++  .....   ..+..+++|++|++++|.+++..++..
T Consensus       101 -~~l~~l~~L~~l~l~~~~~~~~-~--~~~~~~~~~~l~~~~~--~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~l~~  171 (227)
T d1h6ua2         101 -SAIAGLQSIKTLDLTSTQITDV-T--PLAGLSNLQVLYLDLN--QITNI---SPLAGLTNLQYLSIGNAQVSDLTPLAN  171 (227)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCCC-G--GGTTCTTCCEEECCSS--CCCCC---GGGGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred             -cccccccccccccccccccccc-c--hhccccchhhhhchhh--hhchh---hhhccccccccccccccccccchhhcc
Confidence             3577899999999999887753 2  3667788888888887  54433   246778889999999998888777888


Q ss_pred             CCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302          251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  290 (299)
                      +++|++|++++|++++ +++ ++++++|++|++++|++++
T Consensus       172 l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         172 LSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred             cccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC
Confidence            8999999999998884 443 7888999999999998875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.1e-16  Score=141.35  Aligned_cols=150  Identities=33%  Similarity=0.354  Sum_probs=80.1

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL  202 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  202 (299)
                      ..+++|++|++++|.++.. +     .+..+++|+.|++++|.+++..+  +..+++|++|++++|++++ ++  .+..+
T Consensus       216 ~~~~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~-~~--~~~~~  284 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDI-G-----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-IS--PLAGL  284 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CG--GGTTC
T ss_pred             cccCCCCEEECCCCCCCCc-c-----hhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCC-CC--ccccc
Confidence            3445566666666665553 1     34556666666666666654322  5556666666666666553 22  24455


Q ss_pred             CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEe
Q 022302          203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLD  282 (299)
Q Consensus       203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  282 (299)
                      +.++.+++..|  .+.+.   ..+..+++++.|++++|++++.+++..+++|++|++++|++++ ++ .++++++|++|+
T Consensus       285 ~~l~~l~~~~n--~l~~~---~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~  357 (384)
T d2omza2         285 TALTNLELNEN--QLEDI---SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLS  357 (384)
T ss_dssp             TTCSEEECCSS--CCSCC---GGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEE
T ss_pred             ccccccccccc--ccccc---cccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEE
Confidence            55555555555  33321   2244555555555555555555445555555555555555552 22 355555555555


Q ss_pred             cCCCCCCC
Q 022302          283 LSDNQNLT  290 (299)
Q Consensus       283 l~~N~l~g  290 (299)
                      +++|++++
T Consensus       358 l~~N~l~~  365 (384)
T d2omza2         358 AGHNQISD  365 (384)
T ss_dssp             CCSSCCCB
T ss_pred             CCCCcCCC
Confidence            55555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=5.1e-18  Score=136.43  Aligned_cols=154  Identities=21%  Similarity=0.187  Sum_probs=124.0

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      +++++|+|++|.+++.++.   ..|..+++|++|++++|.+....+..+..+++|++|++++|+++. +++..|.++++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~---~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~-l~~~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTC
T ss_pred             CCCCEEEeCCCCCcccccc---cccCCCceEeeeeccccccccccccccccccccceeeeccccccc-cCHHHHhCCCcc
Confidence            5789999999999875533   167899999999999999998888999999999999999999994 666689999999


Q ss_pred             CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC-CCCCCEEeCCCCccCccCcccccCCCCCCEEecC
Q 022302          206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK-LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLS  284 (299)
Q Consensus       206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~  284 (299)
                      ++|+|++|  .+.+..+ ..|..+++|++|+|++|.+........ ...++.+.+..+.++...|..+   ..++.++++
T Consensus       105 ~~L~L~~N--~l~~i~~-~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~  178 (192)
T d1w8aa_         105 KTLNLYDN--QISCVMP-GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLP  178 (192)
T ss_dssp             CEEECCSS--CCCEECT-TSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSC
T ss_pred             cccccCCc--cccccCH-HHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhh---cCCEeeecC
Confidence            99999999  7765544 788999999999999999876543221 1235566677787777677554   445677888


Q ss_pred             CCCCC
Q 022302          285 DNQNL  289 (299)
Q Consensus       285 ~N~l~  289 (299)
                      .|++.
T Consensus       179 ~n~l~  183 (192)
T d1w8aa_         179 HSEFK  183 (192)
T ss_dssp             TTTCC
T ss_pred             HhhCc
Confidence            88875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=5.6e-17  Score=130.23  Aligned_cols=157  Identities=19%  Similarity=0.153  Sum_probs=118.6

Q ss_pred             ccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc-hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302          128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI-LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ  206 (299)
Q Consensus       128 L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  206 (299)
                      .++++.++++++.+++     .+  .+++++|+|++|+++..+ +..|..+++|++|++++|++... +...+..+++|+
T Consensus        10 ~~~v~Cs~~~L~~iP~-----~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~   81 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPR-----DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTTSCCSSCCS-----CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCC
T ss_pred             CCEEEEeCCCcCccCC-----CC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccc
Confidence            4678999999987643     33  268999999999997644 55778899999999999999864 445788899999


Q ss_pred             EEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecC
Q 022302          207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLS  284 (299)
Q Consensus       207 ~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~  284 (299)
                      +|++++|  .+....+ ..|.++++|++|+|++|+++.+++  +..+++|++|+|++|.+......... ...++.+.+.
T Consensus        82 ~L~Ls~N--~l~~l~~-~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~  157 (192)
T d1w8aa_          82 ELQLGEN--KIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLN  157 (192)
T ss_dssp             EEECCSC--CCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCS
T ss_pred             eeeeccc--cccccCH-HHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH-hhhhhhhccc
Confidence            9999999  6665444 778899999999999999988764  78889999999999988754332111 1224555666


Q ss_pred             CCCCCCccCCCc
Q 022302          285 DNQNLTTLGKPL  296 (299)
Q Consensus       285 ~N~l~g~ip~~~  296 (299)
                      .|.+....|..+
T Consensus       158 ~~~~~c~~p~~l  169 (192)
T d1w8aa_         158 GGAARCGAPSKV  169 (192)
T ss_dssp             GGGCBBCSSTTT
T ss_pred             CCCeEeCCChhh
Confidence            677766666544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=5.9e-16  Score=136.46  Aligned_cols=149  Identities=30%  Similarity=0.386  Sum_probs=130.1

Q ss_pred             cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      ..+..+++|+.|++++|.+++..      .+..+++|++|+++++++++..  .+..++.++.+++..|.+++ ++  .+
T Consensus       235 ~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~--~~  303 (384)
T d2omza2         235 GTLASLTNLTDLDLANNQISNLA------PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-IS--PI  303 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CG--GG
T ss_pred             chhhcccccchhccccCccCCCC------cccccccCCEeeccCcccCCCC--cccccccccccccccccccc-cc--cc
Confidence            45778899999999999999864      4688999999999999998643  37789999999999999986 33  47


Q ss_pred             cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCC
Q 022302          200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ  279 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  279 (299)
                      ..++++++|++++|  .+.+..   .+..+++|++|++++|++++.+.+..+++|++|++++|++++..|  +.++++|+
T Consensus       304 ~~~~~l~~L~ls~n--~l~~l~---~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~  376 (384)
T d2omza2         304 SNLKNLTYLTLYFN--NISDIS---PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRIT  376 (384)
T ss_dssp             GGCTTCSEEECCSS--CCSCCG---GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred             chhcccCeEECCCC--CCCCCc---ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence            88999999999999  666542   378899999999999999998889999999999999999996544  89999999


Q ss_pred             EEecCCC
Q 022302          280 VLDLSDN  286 (299)
Q Consensus       280 ~L~l~~N  286 (299)
                      +|+|++|
T Consensus       377 ~L~L~~N  383 (384)
T d2omza2         377 QLGLNDQ  383 (384)
T ss_dssp             EEECCCE
T ss_pred             EeeCCCC
Confidence            9999988

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=3.5e-15  Score=122.59  Aligned_cols=164  Identities=29%  Similarity=0.376  Sum_probs=135.9

Q ss_pred             CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc
Q 022302           91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS  169 (299)
Q Consensus        91 ~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  169 (299)
                      -.+++.+++++ .+.+             ...+.++++++++++++|.++.. +     .+.++++|+.++++.+...+.
T Consensus        62 l~~L~~L~ls~n~i~~-------------~~~l~~l~~l~~l~~~~n~~~~i-~-----~l~~l~~L~~l~l~~~~~~~~  122 (227)
T d1h6ua2          62 LNNLIGLELKDNQITD-------------LAPLKNLTKITELELSGNPLKNV-S-----AIAGLQSIKTLDLTSTQITDV  122 (227)
T ss_dssp             CTTCCEEECCSSCCCC-------------CGGGTTCCSCCEEECCSCCCSCC-G-----GGTTCTTCCEEECTTSCCCCC
T ss_pred             CCCCcEeecCCceeec-------------ccccccccccccccccccccccc-c-----ccccccccccccccccccccc
Confidence            35688888887 5544             23478899999999999998764 3     578999999999999988764


Q ss_pred             chHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccccc
Q 022302          170 ILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA  249 (299)
Q Consensus       170 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~  249 (299)
                      .  .+...+.++.+.++++.+... .  .+..+++|++|++++|  ...+.   ..+.++++|+.|++++|++++.+++.
T Consensus       123 ~--~~~~~~~~~~l~~~~~~~~~~-~--~~~~~~~L~~L~l~~n--~~~~~---~~l~~l~~L~~L~Ls~n~l~~l~~l~  192 (227)
T d1h6ua2         123 T--PLAGLSNLQVLYLDLNQITNI-S--PLAGLTNLQYLSIGNA--QVSDL---TPLANLSKLTTLKADDNKISDISPLA  192 (227)
T ss_dssp             G--GGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCCEEECCSS--CCCCC---GGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             c--hhccccchhhhhchhhhhchh-h--hhcccccccccccccc--ccccc---hhhcccccceecccCCCccCCChhhc
Confidence            3  366789999999999988753 2  4678899999999999  55433   34788999999999999999988899


Q ss_pred             CCCCCCEEeCCCCccCccCcccccCCCCCCEEecCC
Q 022302          250 KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD  285 (299)
Q Consensus       250 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~  285 (299)
                      .+++|++|++++|++++ +++ ++++++|++|++++
T Consensus       193 ~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         193 SLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             GCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             CCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            99999999999999995 443 89999999999973

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=2.9e-15  Score=128.48  Aligned_cols=161  Identities=29%  Similarity=0.310  Sum_probs=114.2

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL  205 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  205 (299)
                      +++++|++++|+++...+.    .|.++++|++|++++|.+....|..|.++++|++|++++|+++. +|..   ....+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~---~~~~l  102 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK---MPKTL  102 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS---CCTTC
T ss_pred             CCCCEEECcCCcCCCcChh----HhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc---hhhhh
Confidence            5799999999999998876    78999999999999999998778889999999999999998763 4321   11233


Q ss_pred             CEEECCCC------------------------cCCCCCccchhhhccCC---------------------CCcEEECCCC
Q 022302          206 QVLDLSGN------------------------FNITSGSLTRLGLANLT---------------------NLKKLDLGSC  240 (299)
Q Consensus       206 ~~L~Ls~n------------------------~~~~~~~~~~~~~~~l~---------------------~L~~L~Ls~n  240 (299)
                      +.|++..|                        ........+ ..+..++                     +|+.|++++|
T Consensus       103 ~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~-~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n  181 (305)
T d1xkua_         103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN  181 (305)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTS
T ss_pred             hhhhccccchhhhhhhhhhccccccccccccccccccCCCc-cccccccccCccccccCCccccCcccCCccCEEECCCC
Confidence            33333333                        101101111 2233344                     4455555554


Q ss_pred             CCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302          241 GITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL  296 (299)
Q Consensus       241 ~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~  296 (299)
                      ..+...  .+..++.++.|++++|.+++..+..+.++++|++|++++|+++ .||+++
T Consensus       182 ~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l  238 (305)
T d1xkua_         182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  238 (305)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             cCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccc
Confidence            444332  3667788889999999888877888888999999999999987 577655

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.1e-15  Score=124.97  Aligned_cols=197  Identities=17%  Similarity=0.218  Sum_probs=127.8

Q ss_pred             CCCCCceEecCCC---------CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHH
Q 022302           79 CDDWEGVKCNATT---------RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD  148 (299)
Q Consensus        79 c~~w~gv~C~~~~---------~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  148 (299)
                      | ....|.|....         ..++.+++++ .+..           ++...|.++++|++|++++|.+...++..   
T Consensus         8 C-~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~-----------l~~~~f~~l~~L~~L~ls~n~~~~~i~~~---   72 (242)
T d1xwdc1           8 C-SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----------IQKGAFSGFGDLEKIEISQNDVLEVIEAD---   72 (242)
T ss_dssp             E-CSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCE-----------ECTTTTTTCTTCCEEEEESCTTCCEECSS---
T ss_pred             C-cCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCc-----------cChhHhhccchhhhhhhccccccceeecc---
Confidence            5 77888886421         2355566655 3322           44556778888888888888777654421   


Q ss_pred             hhcCCCCCCEEECCC-CCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhc
Q 022302          149 SFGSLKQLKMLNLGD-NFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLA  227 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~  227 (299)
                      .|..++.++++.+.. |.+....+..+.++++|+++++++|.+....+...+..+..+..+...++  ... .++...+.
T Consensus        73 ~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~--~l~-~i~~~~~~  149 (242)
T d1xwdc1          73 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI--NIH-TIERNSFV  149 (242)
T ss_dssp             SEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCT--TCC-EECTTSST
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccc--ccc-cccccccc
Confidence            567788888887754 56666666777888888888888887764322222334445555555554  332 23324455


Q ss_pred             cCC-CCcEEECCCCCCCCccc-ccCCCCCCEE-eCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302          228 NLT-NLKKLDLGSCGITTIQG-LAKLKNLEAL-DLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       228 ~l~-~L~~L~Ls~n~l~~~~~-l~~l~~L~~L-~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      .++ .++.|++.+|+++.... ....++++++ ++++|+++...+..|.++++|++|++++|+++ .+|.
T Consensus       150 ~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         150 GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS  218 (242)
T ss_dssp             TSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCS
T ss_pred             cccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCH
Confidence            543 78888999888887653 3445565555 56778888544556788999999999999987 4655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=118.44  Aligned_cols=84  Identities=24%  Similarity=0.210  Sum_probs=43.1

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN  201 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  201 (299)
                      +.+..++++|+|++|+++.+..     .+..+++|++|++++|.++. + +.+..+++|++|++++|+++. +++..+..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~-----~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~-l~~~~~~~   85 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIEN-----LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR-IGEGLDQA   85 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-----GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE-ECSCHHHH
T ss_pred             ccCcCcCcEEECCCCCCCccCc-----cccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccC-CCcccccc
Confidence            4445555666666666555421     33445556666666665543 2 224555555555555555552 33323444


Q ss_pred             CCCCCEEECCCC
Q 022302          202 LRYLQVLDLSGN  213 (299)
Q Consensus       202 l~~L~~L~Ls~n  213 (299)
                      +++|++|++++|
T Consensus        86 l~~L~~L~L~~N   97 (162)
T d1a9na_          86 LPDLTELILTNN   97 (162)
T ss_dssp             CTTCCEEECCSC
T ss_pred             ccccccceeccc
Confidence            555555555555

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2e-15  Score=117.60  Aligned_cols=127  Identities=23%  Similarity=0.185  Sum_probs=105.8

Q ss_pred             hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302          149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN  228 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~  228 (299)
                      .+.+..++++|+|++|+++. ++..+..+++|++|++++|+++ .++  .+..+++|++|++++|  .+....+ ..+..
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N--~i~~l~~-~~~~~   85 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNN--RICRIGE-GLDQA   85 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSS--CCCEECS-CHHHH
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccc--cccCCCc-ccccc
Confidence            46678899999999999985 4666678999999999999998 454  4889999999999999  6654433 55678


Q ss_pred             CCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCc----ccccCCCCCCEEec
Q 022302          229 LTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSL----EGLANLTNLQVLDL  283 (299)
Q Consensus       229 l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~l  283 (299)
                      +++|+.|++++|+++...   .+..+++|++|++++|.++. .|    ..+..+++|++||-
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence            999999999999998764   47788999999999999984 44    35788999999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=5.5e-15  Score=109.81  Aligned_cols=74  Identities=34%  Similarity=0.371  Sum_probs=38.6

Q ss_pred             EEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEE
Q 022302          130 RLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLD  209 (299)
Q Consensus       130 ~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~  209 (299)
                      .|++++|+++.. +     .+..+++|++|++++|.++. +|+.++.+++|++|++++|++++ ++  .+..+++|++|+
T Consensus         2 ~L~Ls~n~l~~l-~-----~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~--~~~~l~~L~~L~   71 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-----HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQELL   71 (124)
T ss_dssp             EEECTTSCCSSC-C-----CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEE
T ss_pred             EEEcCCCCCCCC-c-----ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC--ccccccccCeEE
Confidence            455555555533 1     34455555555555555542 34445555555555555555553 33  245555555555


Q ss_pred             CCCC
Q 022302          210 LSGN  213 (299)
Q Consensus       210 Ls~n  213 (299)
                      +++|
T Consensus        72 l~~N   75 (124)
T d1dcea3          72 LCNN   75 (124)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.1e-14  Score=108.10  Aligned_cols=116  Identities=27%  Similarity=0.291  Sum_probs=85.4

Q ss_pred             CEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEE
Q 022302          157 KMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLD  236 (299)
Q Consensus       157 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~  236 (299)
                      |.|++++|+++. ++ .+..+++|++|++++|+++ .+|+ .+..+++|++|++++|  .+.+ ++  .+..+++|++|+
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N--~i~~-l~--~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDN--ALEN-VD--GVANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSS--CCCC-CG--GGTTCSSCCEEE
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchh-hhhhhhcccccccccc--cccc-cC--ccccccccCeEE
Confidence            578889998874 33 4788888999999998887 4665 6788888888988888  5553 33  477888888888


Q ss_pred             CCCCCCCCcc---cccCCCCCCEEeCCCCccCcc---CcccccCCCCCCEE
Q 022302          237 LGSCGITTIQ---GLAKLKNLEALDLSYNYYIHS---SLEGLANLTNLQVL  281 (299)
Q Consensus       237 Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L  281 (299)
                      +++|+++..+   .+..+++|+.|++++|+++..   .......+|+|+.|
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8888887654   367778888888888888642   12223446666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.8e-15  Score=124.11  Aligned_cols=181  Identities=23%  Similarity=0.208  Sum_probs=129.5

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCC-CCCcc
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDS  169 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~  169 (299)
                      .++..+++++ .+.+.          .....+.++++|++|++++|.+++....    .+..+++|++|+++++ .+++.
T Consensus        46 ~~L~~LdLs~~~i~~~----------~l~~l~~~c~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~Ls~c~~itd~  111 (284)
T d2astb2          46 FRVQHMDLSNSVIEVS----------TLHGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEF  111 (284)
T ss_dssp             BCCCEEECTTCEECHH----------HHHHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHH
T ss_pred             CCCCEEECCCCccCHH----------HHHHHHHhCCCcccccccccCCCcHHHH----HHhcCCCCcCcccccccccccc
Confidence            3577888877 44331          1123577889999999999988776555    7888999999999995 56643


Q ss_pred             c-hHhhccCCCCcEEeCCCCc-CCCcchhhhh-cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCC-CCCc
Q 022302          170 I-LPYLNTLTSLTTLILSDNS-IEGSRTKQGL-ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG-ITTI  245 (299)
Q Consensus       170 ~-p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~-~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~  245 (299)
                      . ......+++|++|++++|. ++.......+ ...++|+.|+++++....+.........++++|++|++++|. +++.
T Consensus       112 ~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~  191 (284)
T d2astb2         112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND  191 (284)
T ss_dssp             HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred             ccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch
Confidence            2 3334578999999999864 4432211123 335789999998762223322121445678999999999875 5533


Q ss_pred             --ccccCCCCCCEEeCCCC-ccCccCcccccCCCCCCEEecCCC
Q 022302          246 --QGLAKLKNLEALDLSYN-YYIHSSLEGLANLTNLQVLDLSDN  286 (299)
Q Consensus       246 --~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~l~~N  286 (299)
                        ..+..+++|++|++++| .+++.....++++++|++|+++++
T Consensus       192 ~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         192 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              35888899999999995 688777778889999999999887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.1e-14  Score=120.16  Aligned_cols=164  Identities=20%  Similarity=0.160  Sum_probs=123.1

Q ss_pred             CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCC-cCCCcchhhhhcCC
Q 022302          124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN-SIEGSRTKQGLANL  202 (299)
Q Consensus       124 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~~l  202 (299)
                      ...+|++||++++.++....   ...+..+++|++|+++++.+++..+..++.+++|++|++++| .++..........+
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l---~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTL---HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHH---HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             cCCCCCEEECCCCccCHHHH---HHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence            44689999999998775422   236788999999999999999888899999999999999996 45532222245678


Q ss_pred             CCCCEEECCCCcCCCC-CccchhhhccCCCCcEEECCCCC--CCCc--cc-ccCCCCCCEEeCCCC-ccCccCcccccCC
Q 022302          203 RYLQVLDLSGNFNITS-GSLTRLGLANLTNLKKLDLGSCG--ITTI--QG-LAKLKNLEALDLSYN-YYIHSSLEGLANL  275 (299)
Q Consensus       203 ~~L~~L~Ls~n~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~--l~~~--~~-l~~l~~L~~L~L~~N-~l~~~~p~~l~~l  275 (299)
                      ++|++|+++++. .++ ..+.......+++|+.|+++++.  ++..  .. ...+++|++|++++| .+++..+..+..+
T Consensus       121 ~~L~~L~ls~c~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         121 SRLDELNLSWCF-DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             TTCCEEECCCCT-TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             Hhcccccccccc-ccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhccc
Confidence            999999999872 122 12221222345799999999763  4432  12 457899999999986 5887888889999


Q ss_pred             CCCCEEecCCC-CCCCc
Q 022302          276 TNLQVLDLSDN-QNLTT  291 (299)
Q Consensus       276 ~~L~~L~l~~N-~l~g~  291 (299)
                      ++|++|++++| .+++.
T Consensus       200 ~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             TTCCEEECTTCTTCCGG
T ss_pred             CcCCEEECCCCCCCChH
Confidence            99999999996 46543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.42  E-value=3.4e-12  Score=110.32  Aligned_cols=58  Identities=21%  Similarity=0.190  Sum_probs=39.8

Q ss_pred             CCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302          230 TNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       230 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      ++|++|++++|+++..+.  .+++|+.|++++|+++ .+|+.   +++|++|++++|++. .+|+
T Consensus       284 ~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPA--LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCEEECCCCccCcccc--ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            567777777777776542  3567777777777777 45543   356888888888876 4554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=4.1e-15  Score=119.75  Aligned_cols=125  Identities=32%  Similarity=0.305  Sum_probs=96.3

Q ss_pred             hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302          149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN  228 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~  228 (299)
                      .+..+++|++|++++|.++. ++ .+..+++|++|++++|.++. ++. .+..+++|++|++++|  .+.. +  ..+..
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~-~~~~~~~L~~L~l~~N--~i~~-l--~~~~~  113 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IEN-LDAVADTLEELWISYN--QIAS-L--SGIEK  113 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSS-HHHHHHHCCEEECSEE--ECCC-H--HHHHH
T ss_pred             HHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-ccc-cccccccccccccccc--cccc-c--ccccc
Confidence            67788899999999998874 33 47788899999999998873 553 4455668999999998  5543 2  34677


Q ss_pred             CCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCccc----------ccCCCCCCEEe
Q 022302          229 LTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEG----------LANLTNLQVLD  282 (299)
Q Consensus       229 l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p~~----------l~~l~~L~~L~  282 (299)
                      +++|++|++++|+++...   .+..+++|+.|++++|++....+..          +..+++|+.||
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            889999999999988764   3788899999999999887543322          56788999886

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.7e-12  Score=105.74  Aligned_cols=161  Identities=18%  Similarity=0.086  Sum_probs=119.4

Q ss_pred             CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc-hHhhccCCCCcEEeCCC-CcCCCcchhhhhcCCC
Q 022302          126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI-LPYLNTLTSLTTLILSD-NSIEGSRTKQGLANLR  203 (299)
Q Consensus       126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~  203 (299)
                      +++++|++++|.++...+.    .|.++++|++|++++|.+...+ +..+..+++++++++.. |++.. .+...|.+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~----~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  103 (242)
T ss_dssp             SCCSEEEEESCCCCEECTT----TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEECCT
T ss_pred             CCCCEEECcCCcCCccChh----Hhhccchhhhhhhccccccceeeccccccccccccccccccccccc-cccccccccc
Confidence            4789999999999987776    7899999999999999987654 44678899999999865 56654 5555789999


Q ss_pred             CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCC-CCCCEEeCCCCccCccCcccccCCCCCCE
Q 022302          204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKL-KNLEALDLSYNYYIHSSLEGLANLTNLQV  280 (299)
Q Consensus       204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  280 (299)
                      +|+++++++|  .+....+...+..+..+..+...++.+.....  +..+ ..++.|++++|+++. ++......+++.+
T Consensus       104 ~L~~l~l~~~--~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~  180 (242)
T d1xwdc1         104 NLQYLLISNT--GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDE  180 (242)
T ss_dssp             TCCEEEEESC--CCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEE
T ss_pred             cccccccchh--hhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhc
Confidence            9999999999  55433221334556667777777777776542  4444 478899999999994 5544555666665


Q ss_pred             E-ecCCCCCCCccCCC
Q 022302          281 L-DLSDNQNLTTLGKP  295 (299)
Q Consensus       281 L-~l~~N~l~g~ip~~  295 (299)
                      + ++++|++. .+|+.
T Consensus       181 ~~~l~~n~l~-~l~~~  195 (242)
T d1xwdc1         181 LNLSDNNNLE-ELPND  195 (242)
T ss_dssp             EECTTCTTCC-CCCTT
T ss_pred             cccccccccc-cccHH
Confidence            5 56777776 56653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=2e-14  Score=115.61  Aligned_cols=132  Identities=26%  Similarity=0.290  Sum_probs=105.1

Q ss_pred             CCCEEECCCC--CCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCC
Q 022302          155 QLKMLNLGDN--FFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNL  232 (299)
Q Consensus       155 ~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L  232 (299)
                      .++.+++..+  .+. .++..+..+++|++|+|++|+++. ++  .+..+++|++|++++|  .+. .++ .....+++|
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~--~l~~l~~L~~L~Ls~N--~i~-~i~-~~~~~~~~L   95 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRN--LIK-KIE-NLDAVADTL   95 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC--CHHHHTTCCEEECCEE--EEC-SCS-SHHHHHHHC
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc--cccCCccccChhhccc--ccc-ccc-ccccccccc
Confidence            4556666554  233 467889999999999999999984 54  4889999999999999  444 334 344556789


Q ss_pred             cEEECCCCCCCCcccccCCCCCCEEeCCCCccCccC-cccccCCCCCCEEecCCCCCCCccCC
Q 022302          233 KKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSS-LEGLANLTNLQVLDLSDNQNLTTLGK  294 (299)
Q Consensus       233 ~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~g~ip~  294 (299)
                      +.|++++|+++..+++..+++|+.|++++|+++... .+.+..+++|++|++++|++....+.
T Consensus        96 ~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_          96 EELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             CEEECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             cccccccccccccccccccccccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            999999999999888888999999999999998532 25689999999999999998654443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.6e-11  Score=94.38  Aligned_cols=108  Identities=18%  Similarity=0.062  Sum_probs=84.6

Q ss_pred             CCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCc-CCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCC
Q 022302          153 LKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN  231 (299)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~  231 (299)
                      +...+.++.+++.+.. .|..+..+++|++|++.+|+ ++ .++...|.++++|+.|++++|  .+....+ ..|..+++
T Consensus         7 c~~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N--~l~~i~~-~~f~~l~~   81 (156)
T d2ifga3           7 PHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKS--GLRFVAP-DAFHFTPR   81 (156)
T ss_dssp             CSSSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSS--CCCEECT-TGGGSCSC
T ss_pred             cCCCCeEEecCCCCcc-CcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeecc--ccCCccc-cccccccc
Confidence            4455678888888764 57778888999999997665 66 576667899999999999999  6654444 77889999


Q ss_pred             CcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccC
Q 022302          232 LKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYI  265 (299)
Q Consensus       232 L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~  265 (299)
                      |++|+|++|+++..+. .....+|++|+|++|.+.
T Consensus        82 L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccceeccCCCCcccChhhhccccccccccCCCccc
Confidence            9999999999988764 334457999999999885

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.28  E-value=2.5e-12  Score=111.80  Aligned_cols=165  Identities=22%  Similarity=0.265  Sum_probs=101.9

Q ss_pred             CCCCCccEEeCCCCCCCCcchhhhHHh---------hcCCCCCCEEECCCCCCCcc----chHhhccCCCCcEEeCCCCc
Q 022302          123 HPFEELQRLDLPGNWFTGIYENRAYDS---------FGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNS  189 (299)
Q Consensus       123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~---------l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~  189 (299)
                      ...++|++|++++|.+.......+...         ....+.|+.+++++|.++..    +...+..++.|++|++++|+
T Consensus       118 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~  197 (344)
T d2ca6a1         118 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG  197 (344)
T ss_dssp             HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccc
Confidence            345566666666665533211111111         13455666666666666532    22334567788888888888


Q ss_pred             CCCcc----hhhhhcCCCCCCEEECCCCcCCCCCc----cchhhhccCCCCcEEECCCCCCCCcc------ccc--CCCC
Q 022302          190 IEGSR----TKQGLANLRYLQVLDLSGNFNITSGS----LTRLGLANLTNLKKLDLGSCGITTIQ------GLA--KLKN  253 (299)
Q Consensus       190 l~~~~----p~~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~------~l~--~l~~  253 (299)
                      +....    ....+..+++|+.|++++|  .+...    +. ..+..+++|++|++++|.+++..      .+.  ..+.
T Consensus       198 i~~~g~~~~l~~~l~~~~~L~~L~Ls~N--~i~~~g~~~L~-~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~  274 (344)
T d2ca6a1         198 IRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALA-IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG  274 (344)
T ss_dssp             CCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHH-HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred             ccccccccchhhhhcchhhhcccccccc--ccccccccccc-ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCC
Confidence            76321    1124566788888888888  44321    22 45677888889999888887542      122  3467


Q ss_pred             CCEEeCCCCccCccC----ccccc-CCCCCCEEecCCCCCCC
Q 022302          254 LEALDLSYNYYIHSS----LEGLA-NLTNLQVLDLSDNQNLT  290 (299)
Q Consensus       254 L~~L~L~~N~l~~~~----p~~l~-~l~~L~~L~l~~N~l~g  290 (299)
                      |++|++++|.++...    ...+. ++++|++|++++|++..
T Consensus       275 L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            889999998887532    33332 57789999999998854

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.6e-12  Score=116.24  Aligned_cols=69  Identities=22%  Similarity=0.268  Sum_probs=37.7

Q ss_pred             cCCCCCccEEeCCCCCCCCcchhhhHHhhcC-CCCCCEEECCCCCCCcc----chHhhccCCCCcEEeCCCCcC
Q 022302          122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGS-LKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSI  190 (299)
Q Consensus       122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l  190 (299)
                      +..+++|++|+|++|.++......++..+.. .++|++|++++|++++.    ++..+..+++|++|++++|.+
T Consensus        51 L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          51 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             HhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            4556667777777666543322222222222 23567777777766543    234455566677777766654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.8e-11  Score=93.07  Aligned_cols=87  Identities=23%  Similarity=0.178  Sum_probs=49.3

Q ss_pred             ccCCCCCccEEeCCCC-CCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302          121 LFHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL  199 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  199 (299)
                      .+..+++|++|++++| .++.+.+.    .|.++++|+.|++++|+++...+..|..+++|++|+|++|+++ .+|...+
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~  100 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTV  100 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTT
T ss_pred             cccCccccCeeecCCCccccccCch----hhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhh
Confidence            3445556666666544 35555444    5566666666666666666555555666666666666666665 3444333


Q ss_pred             cCCCCCCEEECCCC
Q 022302          200 ANLRYLQVLDLSGN  213 (299)
Q Consensus       200 ~~l~~L~~L~Ls~n  213 (299)
                      .. .+|+.|+|++|
T Consensus       101 ~~-~~l~~L~L~~N  113 (156)
T d2ifga3         101 QG-LSLQELVLSGN  113 (156)
T ss_dssp             CS-CCCCEEECCSS
T ss_pred             cc-ccccccccCCC
Confidence            33 24666666666

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=1e-11  Score=107.81  Aligned_cols=93  Identities=18%  Similarity=0.245  Sum_probs=64.4

Q ss_pred             CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcch------hhhHHhhcCCCCCCEEECCCC
Q 022302           92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYE------NRAYDSFGSLKQLKMLNLGDN  164 (299)
Q Consensus        92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~~l~~l~~L~~L~Ls~n  164 (299)
                      ..++.|+|++ .+...-      . ..-...+...++|+.++++++.......      ..+...+..+++|++|++++|
T Consensus        31 ~~l~~L~Ls~n~i~~~~------~-~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEA------A-RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SCCCEEECTTSEECHHH------H-HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             CCCCEEECcCCcCCHHH------H-HHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            4577888887 332200      0 0112356788999999999886554321      134456788999999999999


Q ss_pred             CCCcc----chHhhccCCCCcEEeCCCCcCC
Q 022302          165 FFNDS----ILPYLNTLTSLTTLILSDNSIE  191 (299)
Q Consensus       165 ~l~~~----~p~~l~~l~~L~~L~L~~n~l~  191 (299)
                      .++..    +...+..+++|++|++++|.+.
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             ccccccccchhhhhcccccchheeccccccc
Confidence            98765    3445567899999999999764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.08  E-value=2.2e-09  Score=92.11  Aligned_cols=90  Identities=26%  Similarity=0.322  Sum_probs=68.7

Q ss_pred             cEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch
Q 022302           93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL  171 (299)
Q Consensus        93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  171 (299)
                      +++.+++++ +++.           ++ +   ..++|++|++++|+++.. |.    .   +.+|+.|++++|+++. ++
T Consensus        39 ~l~~LdLs~~~L~~-----------lp-~---~~~~L~~L~Ls~N~l~~l-p~----~---~~~L~~L~l~~n~l~~-l~   94 (353)
T d1jl5a_          39 QAHELELNNLGLSS-----------LP-E---LPPHLESLVASCNSLTEL-PE----L---PQSLKSLLVDNNNLKA-LS   94 (353)
T ss_dssp             TCSEEECTTSCCSC-----------CC-S---CCTTCSEEECCSSCCSSC-CC----C---CTTCCEEECCSSCCSC-CC
T ss_pred             CCCEEEeCCCCCCC-----------CC-C---CCCCCCEEECCCCCCccc-cc----c---hhhhhhhhhhhcccch-hh
Confidence            467889988 5543           11 1   246899999999999865 43    2   4689999999998874 33


Q ss_pred             HhhccC-CCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCC
Q 022302          172 PYLNTL-TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN  213 (299)
Q Consensus       172 ~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n  213 (299)
                          .+ +.|++|++++|.+. .+|.  ++.+++|++|+++++
T Consensus        95 ----~lp~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          95 ----DLPPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             ----SCCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSS
T ss_pred             ----hhccccccccccccccc-cccc--hhhhccceeeccccc
Confidence                23 46999999999998 4663  678999999999988

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2e-10  Score=102.29  Aligned_cols=169  Identities=25%  Similarity=0.196  Sum_probs=114.4

Q ss_pred             ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhc-----cCCCCcEEeCCCCcCCCcch
Q 022302          121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN-----TLTSLTTLILSDNSIEGSRT  195 (299)
Q Consensus       121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~p  195 (299)
                      .......++.+++++|.+...........+...+.++.+++++|.+++.....+.     ....|+.+++++|.+.....
T Consensus       250 ~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~  329 (460)
T d1z7xw1         250 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC  329 (460)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhh
Confidence            3445678888899888887665544555667788888999998888654333321     34578899999888774322


Q ss_pred             h---hhhcCCCCCCEEECCCCcCCCCCc----cchhhh-ccCCCCcEEECCCCCCCCcc------cccCCCCCCEEeCCC
Q 022302          196 K---QGLANLRYLQVLDLSGNFNITSGS----LTRLGL-ANLTNLKKLDLGSCGITTIQ------GLAKLKNLEALDLSY  261 (299)
Q Consensus       196 ~---~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~~-~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~  261 (299)
                      .   ..+...++|++|+|++|  .+.+.    +. ..+ ...+.|++|++++|+++...      .+..+++|++|++++
T Consensus       330 ~~l~~~~~~~~~L~~L~Ls~N--~i~~~g~~~l~-~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~  406 (460)
T d1z7xw1         330 SHFSSVLAQNRFLLELQISNN--RLEDAGVRELC-QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN  406 (460)
T ss_dssp             HHHHHHHHHCSSCCEEECCSS--BCHHHHHHHHH-HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred             hhcccccccccchhhhheeee--cccCcccchhh-hhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCC
Confidence            1   12345678999999998  44321    22 222 24567999999999887532      255678899999999


Q ss_pred             CccCccCcccc----c-CCCCCCEEecCCCCCCCcc
Q 022302          262 NYYIHSSLEGL----A-NLTNLQVLDLSDNQNLTTL  292 (299)
Q Consensus       262 N~l~~~~p~~l----~-~l~~L~~L~l~~N~l~g~i  292 (299)
                      |+++......+    . +.+.|+.|++.+|.+..+.
T Consensus       407 N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         407 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            98876433333    2 3457899999998886543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.4e-09  Score=81.54  Aligned_cols=83  Identities=24%  Similarity=0.143  Sum_probs=45.5

Q ss_pred             hcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcc------
Q 022302          199 LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLE------  270 (299)
Q Consensus       199 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~------  270 (299)
                      +..+++|++|++++|.+.....++ ..+..+++|+.|++++|.++....  .....+|+.|++++|.+.....+      
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~-~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGG-THHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhH-HHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            344556666666666222212222 344556666666666666666543  12234567777777777654332      


Q ss_pred             -cccCCCCCCEEe
Q 022302          271 -GLANLTNLQVLD  282 (299)
Q Consensus       271 -~l~~l~~L~~L~  282 (299)
                       .+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence             245677777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.8e-08  Score=77.37  Aligned_cols=83  Identities=22%  Similarity=0.201  Sum_probs=42.9

Q ss_pred             hhccCCCCcEEeCCCCcCCCcch-hhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-----
Q 022302          173 YLNTLTSLTTLILSDNSIEGSRT-KQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-----  246 (299)
Q Consensus       173 ~l~~l~~L~~L~L~~n~l~~~~p-~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----  246 (299)
                      ....+++|++|+|++|+++..-+ ...+..+++|+.|++++|  .+...-+ .......+|+.|++++|.+....     
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N--~i~~l~~-l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN--ELKSERE-LDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS--CCCCGGG-HHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC--ccccchh-hhhhhccccceeecCCCCcCcCcccchh
Confidence            33456666666666666653211 123455666666666666  3332211 22233345666666666665432     


Q ss_pred             ----cccCCCCCCEEe
Q 022302          247 ----GLAKLKNLEALD  258 (299)
Q Consensus       247 ----~l~~l~~L~~L~  258 (299)
                          .+..+|+|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence                144566777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.38  E-value=1.1e-06  Score=67.30  Aligned_cols=117  Identities=10%  Similarity=0.145  Sum_probs=72.5

Q ss_pred             CCCCCccEEeCCCC-CCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc----chHhhccCCCCcEEeCCCCcCCCcchh-
Q 022302          123 HPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGSRTK-  196 (299)
Q Consensus       123 ~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~-  196 (299)
                      .+.+.|++|+|+++ .+....-..++..+...+.|++|++++|.+...    +...+...+.|++|++++|.+...... 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34578888888864 455544445566777888888888888887643    233455667888888888887743211 


Q ss_pred             --hhhcCCCCCCEEECCCCcCCCCCc-----cchhhhccCCCCcEEECCCC
Q 022302          197 --QGLANLRYLQVLDLSGNFNITSGS-----LTRLGLANLTNLKKLDLGSC  240 (299)
Q Consensus       197 --~~~~~l~~L~~L~Ls~n~~~~~~~-----~~~~~~~~l~~L~~L~Ls~n  240 (299)
                        ..+...++|++|++++|.....|.     +. ..+...+.|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~-~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM-MAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH-HHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH-HHHHhCCCccEeeCcCC
Confidence              135556678888887773222221     11 33444566666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.18  E-value=3.9e-06  Score=64.02  Aligned_cols=118  Identities=16%  Similarity=0.107  Sum_probs=73.0

Q ss_pred             cCCCCCccEEeCCC-CCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch----HhhccCCCCcEEeCCCCcCCCcchh
Q 022302          122 FHPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL----PYLNTLTSLTTLILSDNSIEGSRTK  196 (299)
Q Consensus       122 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~  196 (299)
                      ..+.+.|++|++++ +.++...-..++..+...++|++|++++|.++....    ..+...++++.+++++|.+......
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34567888888887 456555444566677788888889998888865433    3345667888888888877643211


Q ss_pred             ---hhhcCCCCCCEEECCCCcCCCCC----ccchhhhccCCCCcEEECCCC
Q 022302          197 ---QGLANLRYLQVLDLSGNFNITSG----SLTRLGLANLTNLKKLDLGSC  240 (299)
Q Consensus       197 ---~~~~~l~~L~~L~Ls~n~~~~~~----~~~~~~~~~l~~L~~L~Ls~n  240 (299)
                         ..+...++|+.++|..+...+..    .+. ..+...++|+.|+++.+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La-~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHH-HHHHhCCCcCEEeCcCC
Confidence               24555677777666433113322    122 34455666666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.09  E-value=3.4e-06  Score=64.55  Aligned_cols=92  Identities=12%  Similarity=0.103  Sum_probs=46.1

Q ss_pred             cCCCCCCEEECCCC-CCCcc----chHhhccCCCCcEEeCCCCcCCCcch---hhhhcCCCCCCEEECCCCcCCCCCccc
Q 022302          151 GSLKQLKMLNLGDN-FFNDS----ILPYLNTLTSLTTLILSDNSIEGSRT---KQGLANLRYLQVLDLSGNFNITSGSLT  222 (299)
Q Consensus       151 ~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~~l~~L~~L~Ls~n~~~~~~~~~  222 (299)
                      .+.+.|++|+|+++ .++..    +-..+...++|++|+|++|.+.....   ...+...+.|++|++++|.+...|...
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            44577888888763 45432    22234556667777777776652111   112344556666666666222111110


Q ss_pred             -hhhhccCCCCcEEECCCCCC
Q 022302          223 -RLGLANLTNLKKLDLGSCGI  242 (299)
Q Consensus       223 -~~~~~~l~~L~~L~Ls~n~l  242 (299)
                       ...+...+.|++|++++|.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHHhCCcCCEEECCCCcC
Confidence             02334445555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.66  E-value=2.5e-05  Score=59.31  Aligned_cols=112  Identities=19%  Similarity=0.107  Sum_probs=59.5

Q ss_pred             hhcCCCCCCEEECCC-CCCCccc----hHhhccCCCCcEEeCCCCcCCCcchh---hhhcCCCCCCEEECCCCcCCCCCc
Q 022302          149 SFGSLKQLKMLNLGD-NFFNDSI----LPYLNTLTSLTTLILSDNSIEGSRTK---QGLANLRYLQVLDLSGNFNITSGS  220 (299)
Q Consensus       149 ~l~~l~~L~~L~Ls~-n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~---~~~~~l~~L~~L~Ls~n~~~~~~~  220 (299)
                      ...+.+.|++|++++ +.++...    -..+...++|++|++++|.+......   ..+...+.++.+++++|  .....
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~--~~~~~   89 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN--FISGS   89 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS--CCCHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc--cccch
Confidence            345668888888887 4565432    23344677788888888877632211   13445567777777776  33211


Q ss_pred             cc---hhhhccCCCCcEEECC--CCCCCCcc------cccCCCCCCEEeCCCC
Q 022302          221 LT---RLGLANLTNLKKLDLG--SCGITTIQ------GLAKLKNLEALDLSYN  262 (299)
Q Consensus       221 ~~---~~~~~~l~~L~~L~Ls--~n~l~~~~------~l~~l~~L~~L~L~~N  262 (299)
                      ..   ...+...++|+.++|.  +|.+....      .+...++|++|+++.+
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            11   0234445556554443  33343211      1334455555555544