Citrus Sinensis ID: 022310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKVFLLLKDVLHFFSCQLTMCLHNHNCSIFDMCQNYFFCLGRIQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccEEEEEccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHccccEEEEEEcHHHHHHHcccccccccHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHcccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHccHHccccccccEEEEcccccccccccEEEEEcccEEEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHcccccccHHHHHcccHHHHccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
meafqkatfpifsanpnllstkpikpfkvsikpppqdfdfrteilSDSQATIAKACPELLNLADDGTLVLIQKrqfgpvpawrsefvepeniwligtthlsqdsaADVERVVRAIKPDNVVVELCRSRAgimytsnggendqQLRSNMfslsgtgffgavgrsidlGGQTALALRLLLALFSSkissdvnrpfgdEFRAARKVAEEVGAqivlgdrpieITLERAWNSLKWNEKLNLLINVIRgitspsdmsldnLKVFLLLKDVLHFFSCQltmclhnhncsifdmCQNYFFCLGRIQ
Flexible Loop (DISEMBL)
meafqkatfpifsanpnllstkpikpFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVraikpdnvvVELCRSRAGIMytsnggendQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSskissdvnrpFGDEFRAARKVAEevgaqivlgdrpiEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKVFLLLKDVLHFFSCQLTMCLHNHNCSIFDMCQNYFFCLGRIQ
Low Complexity Region (SEG)
MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTalalrlllalFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKVFLLLKDVLHFFSCQLTMCLHNHNCSIFDMCQNYFFCLGRIQ
Disordered region (IsUnstruct)
**********IF*************************FDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTS***********NMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKVFLLLKDVLHFFSCQLTMCLHNHNCSIFDMCQNYFFCLGR**
Disordered Region (DISOPRED)
******ATFPIFSAN******************************************************************WRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAG*****************MFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGIT*************LLLKDVLHFFSCQLTMCLHNHNCSIFDMCQNYFFCLGRI*
Disordered Region (DISEMBL)
MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKVFLLLKDVLHFFSCQLTMCLHNHNCSIFDMCQNYFFCLGRIQ
Disordered Region (DISPRO)
****QKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKVFLLLKDVLHFFSCQLTMCLHNHNCSIFDMCQNYFFCLGRIQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKVFLLLKDVLHFFSCQLTMCLHNHNCSIFDMCQNYFFCLGRIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q9H4I3	376	TraB domain-containing pr	yes	no	0.672	0.534	0.271	4e-12
Q99JY4	376	TraB domain-containing pr	yes	no	0.461	0.367	0.317	2e-11
Q58DF3	377	TraB domain-containing pr	yes	no	0.531	0.421	0.298	3e-11
Q58760	397	Uncharacterized protein M	yes	no	0.431	0.324	0.278	1e-07

>sp|Q9H4I3|TRABD_HUMAN TraB domain-containing protein OS=Homo sapiens GN=TRABD PE=1 SV=1

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 24/225 (10%)

Query: 16  PNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQ 75
           P+  + +P+ P + S +P P+      + LSD  A          NL  +  + L ++RQ
Sbjct: 9   PHEANVEPVVPSEAS-EPVPRVLSGDPQNLSDVDA---------FNLLLE--MKLKRRRQ 56

Query: 76  FGPVPAWRSEFVEPE--NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMY 133
              +P   ++ V  +   ++++GT H S DS  DV + +R ++PD VVVELC+ R  ++ 
Sbjct: 57  RPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLK 116

Query: 134 TSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPF 193
                       S +   +       + +++   G  +  +++LL   S+ I+  +    
Sbjct: 117 MDE---------STLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAP 167

Query: 194 GDEFRAARKVAEEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNL 237
           G EFR A K A +V   +  LGDRPI +T +RA  +L + +K+ L
Sbjct: 168 GGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRL 212

Homo sapiens (taxid: 9606)

>sp|Q99JY4|TRABD_MOUSE TraB domain-containing protein OS=Mus musculus GN=Trabd PE=2 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 91  NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFS 150
            ++++GT H S DS  DV + +R ++PD VVVELC+ R  ++       +++ L      
Sbjct: 73  RVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKM-----DERTLLREAKE 127

Query: 151 LSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVG-A 209
           +S      AV ++  + G     +++LL   S+ I+  +    G EFR A K A +V   
Sbjct: 128 VSLEKLQQAVRQNGLMSG----LMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFC 183

Query: 210 QIVLGDRPIEITLERAWNSLKWNEKLNL 237
           +  LGDRPI +T +RA  +L + +K+ L
Sbjct: 184 KFHLGDRPIPVTFKRAIAALSFWQKVKL 211

Mus musculus (taxid: 10090)

>sp|Q58DF3|TRABD_BOVIN TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 12/171 (7%)

Query: 70  LIQKRQFGPVPAWRSEFVEPE--NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRS 127
           L ++R+   +P   +E V  +   ++++GT H S DS  DV + +R ++PD VVVELC+ 
Sbjct: 51  LKRRRERPNLPHTVTELVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQY 110

Query: 128 RAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISS 187
           R  ++       +++ L      +S       + ++I   G  +  +++LL   S+ I+ 
Sbjct: 111 RVSMLKM-----DERTLLREAKEIS----LEKLQQAIRQNGVASGLMQMLLLKVSAHITE 161

Query: 188 DVNRPFGDEFRAARKVAEEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNL 237
            +    G EFR A K A  V   +  LGDRPI +T +RA  +L   +K+ L
Sbjct: 162 QLGVAPGGEFREAFKEASRVPFCKFHLGDRPIPVTFKRAIAALSLWQKVKL 212

Bos taurus (taxid: 9913)

>sp|Q58760|Y1365_METJA Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1365 PE=4 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 18/147 (12%)

Query: 91  NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFS 150
           +I+LIGT H+S+DS  +VE+++ ++ P+ + VEL   R   + T     N+++       
Sbjct: 18  DIYLIGTAHVSKDSIEEVEKIISSVSPEGIAVELDDRRFFSLIT-----NEEKKVDLKKV 72

Query: 151 LSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQ 210
           L    F                 + L+LA    KI        G E + A ++A + G  
Sbjct: 73  LKEGNFL-------------KFFIYLILANSQKKIGESFGIKPGSEMKKAIEIASKYGLP 119

Query: 211 IVLGDRPIEITLERAWNSLKWNEKLNL 237
           I L DR I+ITL R  + + + EK+ +
Sbjct: 120 IYLIDRDIDITLSRLMDRMTFKEKMKI 146

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
255539559	390	conserved hypothetical protein [Ricinus	0.949	0.728	0.664	1e-104
297741113	380	unnamed protein product [Vitis vinifera]	0.836	0.657	0.773	1e-104
225455471	385	PREDICTED: traB domain-containing protei	0.836	0.649	0.758	1e-103
449446067	402	PREDICTED: uncharacterized LOC101219560	0.842	0.626	0.742	6e-99
449485634	823	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.842	0.306	0.742	7e-99
357444077	380	TraB domain-containing protein [Medicago	0.839	0.660	0.706	1e-96
356535904	371	PREDICTED: traB domain-containing protei	0.812	0.654	0.721	1e-93
19699285	391	AT5g52030/MSG15_11 [Arabidopsis thaliana	0.829	0.634	0.692	2e-88
297792523	404	hypothetical protein ARALYDRAFT_495273 [	0.799	0.591	0.685	4e-87
42573660	402	TraB family protein [Arabidopsis thalian	0.829	0.616	0.662	5e-86

>gi|255539559|ref|XP_002510844.1| conserved hypothetical protein [Ricinus communis] gi|223549959|gb|EEF51446.1| conserved hypothetical protein [Ricinus communis]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/304 (66%), Positives = 236/304 (77%), Gaps = 20/304 (6%)

Query: 1   MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELL 60
           M+    +TFPIFS  PN   +KP KP KVSIKPPP DFDFR+EIL +S+ TIAK  P+LL
Sbjct: 1   MDTLLNSTFPIFSKYPNFPISKPAKPLKVSIKPPPPDFDFRSEILQESRTTIAKNHPDLL 60

Query: 61  NLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNV 120
           +LAD G L+LI+KR FGPVPAWR+EFVEPE IWL+GT+H+S +SA  VERVVRA+KPDNV
Sbjct: 61  DLADSGNLILIEKRLFGPVPAWRTEFVEPEAIWLVGTSHISTESATQVERVVRAVKPDNV 120

Query: 121 VVELCRSR-------------AGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLG 167
           VVELCRSR             AGIMYTSN GE++QQLRSNMFSLSG GFFGAVGRSI+LG
Sbjct: 121 VVELCRSRQVLFLFMLIYKIKAGIMYTSNEGEDNQQLRSNMFSLSGNGFFGAVGRSINLG 180

Query: 168 GQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWN 227
           GQTALALRLLLALFSSKIS+DVNRPFGDEFRAARKV+EE+GAQIVLGDRPIEITLERAWN
Sbjct: 181 GQTALALRLLLALFSSKISNDVNRPFGDEFRAARKVSEEIGAQIVLGDRPIEITLERAWN 240

Query: 228 SLKWNEKLNLLINVIRGITSPSDMSLDNLKV-------FLLLKDVLHFFSCQLTMCLHNH 280
           +LKW EKL+L+ +V+RGITS S  S  + KV       FLL + +   +   L   +H  
Sbjct: 241 ALKWKEKLSLVSSVVRGITSSSHTSKKDFKVPDTDDDTFLLYEKLSFSYPSLLPPLIHER 300

Query: 281 NCSI 284
           +  +
Sbjct: 301 DTYL 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741113|emb|CBI31844.3| unnamed protein product [Vitis vinifera]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/256 (77%), Positives = 229/256 (89%), Gaps = 6/256 (2%)

Query: 7   ATFPIFSANPNLLSTKPIKPFKVS--IKPPPQDFDFRTEILSDSQATIAKACPELLNLAD 64
           +TFPIF+ANPN  +TKP KP KVS  IKPPP DFDFR +IL DS+ATIA+  P+LL+LAD
Sbjct: 6   STFPIFTANPNFHTTKPSKPSKVSVSIKPPPPDFDFRAQILEDSRATIAQTHPQLLDLAD 65

Query: 65  DGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVEL 124
           +G+LV+I+KR FGPVPAWR+EFVEPE IWL+GTTH+S  SAADVERVV  + PDNVVVEL
Sbjct: 66  NGSLVVIEKRLFGPVPAWRTEFVEPEEIWLLGTTHISSFSAADVERVVEVVNPDNVVVEL 125

Query: 125 CRSR---AGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALF 181
           CRSR   AGIMYTSN GE +QQLRS+MFSLSGTGFFGA+GRSI+LGGQTALALRLLLA+F
Sbjct: 126 CRSRQVLAGIMYTSNHGELNQQLRSSMFSLSGTGFFGAIGRSINLGGQTALALRLLLAVF 185

Query: 182 SSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINV 241
           SSKISSDVNRPFGDEFRAARK +E+VGAQIVLGDRPIEITLERAWNSL+WNEKL+L+I+V
Sbjct: 186 SSKISSDVNRPFGDEFRAARKASEKVGAQIVLGDRPIEITLERAWNSLEWNEKLSLVISV 245

Query: 242 IRGITSPSDMSLDNLK 257
           IRGITS S++S + +K
Sbjct: 246 IRGITS-SELSTNEMK 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455471|ref|XP_002274961.1| PREDICTED: traB domain-containing protein-like [Vitis vinifera]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/261 (75%), Positives = 229/261 (87%), Gaps = 11/261 (4%)

Query: 7   ATFPIFSANPNLLSTKPIKPFKVS--IKPPPQDFDFRTEILSDSQATIAKACPELLNLAD 64
           +TFPIF+ANPN  +TKP KP KVS  IKPPP DFDFR +IL DS+ATIA+  P+LL+LAD
Sbjct: 6   STFPIFTANPNFHTTKPSKPSKVSVSIKPPPPDFDFRAQILEDSRATIAQTHPQLLDLAD 65

Query: 65  DGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVEL 124
           +G+LV+I+KR FGPVPAWR+EFVEPE IWL+GTTH+S  SAADVERVV  + PDNVVVEL
Sbjct: 66  NGSLVVIEKRLFGPVPAWRTEFVEPEEIWLLGTTHISSFSAADVERVVEVVNPDNVVVEL 125

Query: 125 CRSR--------AGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRL 176
           CRSR        AGIMYTSN GE +QQLRS+MFSLSGTGFFGA+GRSI+LGGQTALALRL
Sbjct: 126 CRSRQVLSLVNGAGIMYTSNHGELNQQLRSSMFSLSGTGFFGAIGRSINLGGQTALALRL 185

Query: 177 LLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLN 236
           LLA+FSSKISSDVNRPFGDEFRAARK +E+VGAQIVLGDRPIEITLERAWNSL+WNEKL+
Sbjct: 186 LLAVFSSKISSDVNRPFGDEFRAARKASEKVGAQIVLGDRPIEITLERAWNSLEWNEKLS 245

Query: 237 LLINVIRGITSPSDMSLDNLK 257
           L+I+VIRGITS S++S + +K
Sbjct: 246 LVISVIRGITS-SELSTNEMK 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446067|ref|XP_004140793.1| PREDICTED: uncharacterized LOC101219560 [Cucumis sativus]

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 187/252 (74%), Positives = 212/252 (84%)

Query: 1   MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELL 60
           MEA +    PIF ++P    TK +KP  VSI PPP DFDFR EI  DS+ATIA+  PELL
Sbjct: 23  MEALKSTAIPIFKSSPLSFPTKSLKPINVSINPPPSDFDFRLEISRDSRATIAETHPELL 82

Query: 61  NLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNV 120
           +LADDG LVL+ K +FGPVPAWR+EFVEP+ IWL+GT+H+S  S  DVERVVRA+KPDNV
Sbjct: 83  DLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTSHISPKSVKDVERVVRAVKPDNV 142

Query: 121 VVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLAL 180
           VVELCRSRAGIMYT + GE DQ+L+SNMFSLSG GF GAV RSI+LGGQTALALRLLLA+
Sbjct: 143 VVELCRSRAGIMYTLDTGEPDQKLKSNMFSLSGDGFLGAVVRSINLGGQTALALRLLLAV 202

Query: 181 FSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLIN 240
           FSSKISSDVNRPFGDEFRAARK +EEVGAQIVLGDRPIEITLERAWN+L W EKL+L+ +
Sbjct: 203 FSSKISSDVNRPFGDEFRAARKASEEVGAQIVLGDRPIEITLERAWNALIWTEKLSLVSS 262

Query: 241 VIRGITSPSDMS 252
           VIRGITS SD S
Sbjct: 263 VIRGITSESDFS 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485634|ref|XP_004157230.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101219560 [Cucumis sativus]

 Score =  366 bits (939), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 187/252 (74%), Positives = 212/252 (84%)

Query: 1   MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELL 60
           MEA +    PIF ++P    TK +KP  VSI PPP DFDFR EI  DS+ATIA+  PELL
Sbjct: 23  MEALKSTAIPIFKSSPLSFPTKSLKPINVSINPPPSDFDFRLEISRDSRATIAETHPELL 82

Query: 61  NLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNV 120
           +LADDG LVL+ K +FGPVPAWR+EFVEP+ IWL+GT+H+S  S  DVERVVRA+KPDNV
Sbjct: 83  DLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTSHISPKSVKDVERVVRAVKPDNV 142

Query: 121 VVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLAL 180
           VVELCRSRAGIMYT + GE DQ+L+SNMFSLSG GF GAV RSI+LGGQTALALRLLLA+
Sbjct: 143 VVELCRSRAGIMYTLDTGEPDQKLKSNMFSLSGDGFLGAVVRSINLGGQTALALRLLLAV 202

Query: 181 FSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLIN 240
           FSSKISSDVNRPFGDEFRAARK +EEVGAQIVLGDRPIEITLERAWN+L W EKL+L+ +
Sbjct: 203 FSSKISSDVNRPFGDEFRAARKASEEVGAQIVLGDRPIEITLERAWNALIWTEKLSLVSS 262

Query: 241 VIRGITSPSDMS 252
           VIRGITS SD S
Sbjct: 263 VIRGITSESDFS 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444077|ref|XP_003592316.1| TraB domain-containing protein [Medicago truncatula] gi|355481364|gb|AES62567.1| TraB domain-containing protein [Medicago truncatula]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 178/252 (70%), Positives = 220/252 (87%), Gaps = 1/252 (0%)

Query: 6   KATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADD 65
           K TFPIF+ NP  +S   ++P KVS+KPPP DF+++ EI  +S+A I +  PELL+LAD+
Sbjct: 7   KPTFPIFTTNPFFISKTSLRPLKVSVKPPPPDFNYKLEISDESRAVIEECYPELLDLADN 66

Query: 66  GTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELC 125
           G+LVL+QK++FGPVP+WR+EFVEPE IWLIGTTH+S++SA DVERVV+A+KPDNVVVELC
Sbjct: 67  GSLVLVQKKRFGPVPSWRTEFVEPEYIWLIGTTHVSKESAMDVERVVKAVKPDNVVVELC 126

Query: 126 RSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKI 185
           RSRAGIMY ++  + D+QLRS MFSLSGTGFFGA+GRSI+LGGQTALALRLLLA FSSKI
Sbjct: 127 RSRAGIMY-ADDDQLDKQLRSTMFSLSGTGFFGAIGRSINLGGQTALALRLLLAAFSSKI 185

Query: 186 SSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGI 245
           SS+++RPFGDEFRAARKV+EEVGAQ+VLGDRPIEITL+RAW +L W +KL+LL  V+RGI
Sbjct: 186 SSNIDRPFGDEFRAARKVSEEVGAQLVLGDRPIEITLQRAWKALNWTQKLSLLTIVVRGI 245

Query: 246 TSPSDMSLDNLK 257
           TS SD+S D L+
Sbjct: 246 TSSSDISTDKLE 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535904|ref|XP_003536482.1| PREDICTED: traB domain-containing protein-like [Glycine max]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/244 (72%), Positives = 218/244 (89%), Gaps = 1/244 (0%)

Query: 16  PNLLSTKPIKP-FKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKR 74
           P  LST+P++P  KVS+KPPP DFD+R EI  +S+A IA++ PELL+LAD+G+LVL+QK+
Sbjct: 6   PFSLSTRPLRPILKVSVKPPPPDFDYRREISEESRAAIAESHPELLDLADNGSLVLVQKK 65

Query: 75  QFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYT 134
           +FGPVP+WR+EFVEPE+IWLIGTTH+S+ SA +VERVVRA++PDNVVVELCRSRAGIMY 
Sbjct: 66  RFGPVPSWRTEFVEPESIWLIGTTHVSEVSAVEVERVVRALRPDNVVVELCRSRAGIMYA 125

Query: 135 SNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFG 194
           +   E  +QLRSNMFSLSGTGFFGAVGRSI+LGGQTALALRLLLA FSSKISSD+NRPFG
Sbjct: 126 TANDELGKQLRSNMFSLSGTGFFGAVGRSINLGGQTALALRLLLATFSSKISSDINRPFG 185

Query: 195 DEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLD 254
           DEFRAARK +EE+GAQIVLGDRPIEITL+RAW ++KW +KL+L++++IRGI S S+ S++
Sbjct: 186 DEFRAARKASEEIGAQIVLGDRPIEITLQRAWKAMKWTQKLSLVLSIIRGIASSSNSSIN 245

Query: 255 NLKV 258
            LK+
Sbjct: 246 KLKL 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19699285|gb|AAL91254.1| AT5g52030/MSG15_11 [Arabidopsis thaliana] gi|23308347|gb|AAN18143.1| At5g52030/MSG15_11 [Arabidopsis thaliana]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 173/250 (69%), Positives = 205/250 (82%), Gaps = 2/250 (0%)

Query: 9   FPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTL 68
           FP F+   +    +PIK   VS++ PP DFDFR +I S+S+A IAK  PELL+LAD+GTL
Sbjct: 12  FPFFTPYTSKHIFRPIK-VSVSVQTPPPDFDFRNDIASESRAAIAKTYPELLDLADNGTL 70

Query: 69  VLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSR 128
           +L+QK+ FGPVPAWR EFVEPE IWL+GT+H+S +SA+ VERVVR +KPDNV VELCRSR
Sbjct: 71  ILLQKQSFGPVPAWRKEFVEPEAIWLVGTSHISPESASIVERVVRTVKPDNVAVELCRSR 130

Query: 129 AGIMYTSN-GGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISS 187
           AGIMYTS+ GGE DQ L+S   SL+GTGF GAVGRS+DLGGQTALALRLLLA+FSSK+SS
Sbjct: 131 AGIMYTSSVGGEVDQNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRLLLAVFSSKLSS 190

Query: 188 DVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITS 247
             +RPFGDEFRAARK +EEVGAQ+VLGDRPIEITL+RAWNSLKW EK NL++ V R ITS
Sbjct: 191 VADRPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVTRVITS 250

Query: 248 PSDMSLDNLK 257
            S +S   LK
Sbjct: 251 SSGISAAELK 260

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792523|ref|XP_002864146.1| hypothetical protein ARALYDRAFT_495273 [Arabidopsis lyrata subsp. lyrata] gi|297309981|gb|EFH40405.1| hypothetical protein ARALYDRAFT_495273 [Arabidopsis lyrata subsp. lyrata]

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 174/254 (68%), Positives = 205/254 (80%), Gaps = 15/254 (5%)

Query: 19  LSTKPI-KPFKVSI--KPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQ 75
           L++KP  +P KVS+  + PP DFDFR EI SDS+A IAK  PELL+LAD+GTL+L+QK+ 
Sbjct: 19  LTSKPFFRPIKVSVSVQTPPPDFDFRNEIASDSRAAIAKTFPELLDLADNGTLILVQKQS 78

Query: 76  FGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSR------- 128
           FGPVPAWR EFVEPE IWL+GT+H+S +SA+ VERVVR +KPDNV VELCRSR       
Sbjct: 79  FGPVPAWRKEFVEPEAIWLVGTSHISPESASVVERVVRTVKPDNVAVELCRSRKVHFFIQ 138

Query: 129 ----AGIMYTSN-GGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSS 183
               AGIMYTS+ GGE DQ L+S + SL+GTGF GAVGRS+DLGGQTALALRLLLA+FSS
Sbjct: 139 LKLGAGIMYTSSVGGEVDQNLKSGVLSLTGTGFLGAVGRSLDLGGQTALALRLLLAVFSS 198

Query: 184 KISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIR 243
           K+SS  +RPFGDEFRAARK +EEVGAQ+VLGDRPIEITL+RAWNSLKW EK NL++ V R
Sbjct: 199 KLSSVADRPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVTR 258

Query: 244 GITSPSDMSLDNLK 257
            ITS S +S   LK
Sbjct: 259 AITSSSGISAAELK 272

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573660|ref|NP_974926.1| TraB family protein [Arabidopsis thaliana] gi|10177738|dbj|BAB11051.1| unnamed protein product [Arabidopsis thaliana] gi|332008777|gb|AED96160.1| TraB family protein [Arabidopsis thaliana]

 Score =  323 bits (829), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 173/261 (66%), Positives = 205/261 (78%), Gaps = 13/261 (4%)

Query: 9   FPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTL 68
           FP F+   +    +PIK   VS++ PP DFDFR +I S+S+A IAK  PELL+LAD+GTL
Sbjct: 12  FPFFTPYTSKHIFRPIK-VSVSVQTPPPDFDFRNDIASESRAAIAKTYPELLDLADNGTL 70

Query: 69  VLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSR 128
           +L+QK+ FGPVPAWR EFVEPE IWL+GT+H+S +SA+ VERVVR +KPDNV VELCRSR
Sbjct: 71  ILLQKQSFGPVPAWRKEFVEPEAIWLVGTSHISPESASIVERVVRTVKPDNVAVELCRSR 130

Query: 129 -----------AGIMYTSN-GGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRL 176
                      AGIMYTS+ GGE DQ L+S   SL+GTGF GAVGRS+DLGGQTALALRL
Sbjct: 131 KVQFFIQTKFGAGIMYTSSVGGEVDQNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRL 190

Query: 177 LLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLN 236
           LLA+FSSK+SS  +RPFGDEFRAARK +EEVGAQ+VLGDRPIEITL+RAWNSLKW EK N
Sbjct: 191 LLAVFSSKLSSVADRPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFN 250

Query: 237 LLINVIRGITSPSDMSLDNLK 257
           L++ V R ITS S +S   LK
Sbjct: 251 LVMAVTRVITSSSGISAAELK 271

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2173073	402	AT5G52030 "AT5G52030" [Arabido	0.829	0.616	0.628	1.6e-79
TAIR|locus:2207205	371	AT1G05270 "AT1G05270" [Arabido	0.254	0.204	0.324	4.1e-11
TAIR|locus:2062581	360	AT2G32340 "AT2G32340" [Arabido	0.140	0.116	0.476	1e-10
ZFIN|ZDB-GENE-030131-1301	360	trabd "TraB domain containing"	0.535	0.444	0.306	1.9e-09
MGI|MGI:1915226	376	Trabd "TraB domain containing"	0.652	0.518	0.257	2.8e-09
DICTYBASE|DDB_G0293922	381	DDB_G0293922 [Dictyostelium di	0.488	0.383	0.230	5.1e-06

TAIR|locus:2173073 AT5G52030 "AT5G52030" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 164/261 (62%), Positives = 195/261 (74%)

Query:     9 FPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTL 68
             FP F+   +    +PIK   VS++ PP DFDFR +I S+S+A IAK  PELL+LAD+GTL
Sbjct:    12 FPFFTPYTSKHIFRPIK-VSVSVQTPPPDFDFRNDIASESRAAIAKTYPELLDLADNGTL 70

Query:    69 VLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSR 128
             +L+QK+ FGPVPAWR EFVEPE IWL+GT+H+S +SA+ VERVVR +KPDNV VELCRSR
Sbjct:    71 ILLQKQSFGPVPAWRKEFVEPEAIWLVGTSHISPESASIVERVVRTVKPDNVAVELCRSR 130

Query:   129 -----------AGIMYTSN-GGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTXXXXXX 176
                        AGIMYTS+ GGE DQ L+S   SL+GTGF GAVGRS+DLGGQT      
Sbjct:   131 KVQFFIQTKFGAGIMYTSSVGGEVDQNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRL 190

Query:   177 XXXXFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLN 236
                 FSSK+SS  +RPFGDEFRAARK +EEVGAQ+VLGDRPIEITL+RAWNSLKW EK N
Sbjct:   191 LLAVFSSKLSSVADRPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFN 250

Query:   237 LLINVIRGITSPSDMSLDNLK 257
             L++ V R ITS S +S   LK
Sbjct:   251 LVMAVTRVITSSSGISAAELK 271

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2207205 AT1G05270 "AT1G05270" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
 Identities = 25/77 (32%), Positives = 45/77 (58%)

Query:   181 FSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLIN 240
             F +KI+S +    G EFR A + A + G +++LGDRP++ITL+R W  +    K+  L +
Sbjct:   182 FLAKIASHLEVFPGAEFRVAYEEAIKYGGKVILGDRPVQITLKRTWAKMPLWHKVKFLYS 241

Query:   241 VI-RGITSPSDMSLDNL 256
             ++ + +  P    L+ +
Sbjct:   242 ILFQAVFLPGAEELEKM 258

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

TAIR|locus:2062581 AT2G32340 "AT2G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 20/42 (47%), Positives = 31/42 (73%)

Query:    91 NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIM 132
             +++L+GT H+SQ+S  +VE V+ A+KP  V +ELC SR  I+
Sbjct:    96 DVYLVGTAHVSQESCREVEAVISALKPQAVFLELCSSRLSIL 137

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-1301 trabd "TraB domain containing" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 53/173 (30%), Positives = 81/173 (46%)

Query:    69 VLIQKRQFGP-VPAWRSEFVEPEN--IWLIGTTHLSQDSAADVERVVRAIKPDNVVVELC 125
             V  Q+RQ  P +P   +    PE   ++L+GT H S  S  DV   +RA++PD VVVELC
Sbjct:    39 VRTQRRQKEPDLPETVTRLTTPEGSVVYLVGTAHFSDSSKKDVATTIRAVQPDVVVVELC 98

Query:   126 RSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTXXXXXXXXXXFSSKI 185
             + R  ++       +++ L      ++       V ++I   G             S+ I
Sbjct:    99 QYRVSMLKM-----DEKTLLKEAKDIN----LEKVQQAIKQNGVMSGLMQILLLKVSAHI 149

Query:   186 SSDVNRPFGDEFRAARKVAEEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNL 237
             +  +    G EFR A K A +V   +  LGDRPI +T +RA  +L   +K  L
Sbjct:   150 TEQLGMAPGGEFREAFKEAGKVPFCKFHLGDRPIPVTFKRAIAALSLWQKARL 202

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1915226 Trabd "TraB domain containing" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 55/214 (25%), Positives = 100/214 (46%)

Query:    34 PPQDFDFRTEILSDSQATIAKAC---PELLNLADDGTLVL---IQKRQFGP-VPAWRSEF 86
             P Q+ D    + + +   + +     P+ ++  D   L+L   +++R+  P +P   ++ 
Sbjct:     7 PAQEADVEPVVTAGTSEAVPRVLAGDPQNISDVDAFNLLLEMKLKRRRERPNLPRTVTQL 66

Query:    87 VEPEN--IWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQL 144
             V  +   ++++GT H S DS  DV + +R ++PD VVVELC+ R  ++      E     
Sbjct:    67 VAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMD---ERTLLR 123

Query:   145 RSNMFSLSGTGFFGAVGRSIDLGGQTXXXXXXXXXXFSSKISSDVNRPFGDEFRAARKVA 204
              +   SL        + +++   G             S+ I+  +    G EFR A K A
Sbjct:   124 EAKEVSLE------KLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEA 177

Query:   205 EEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNL 237
              +V   +  LGDRPI +T +RA  +L + +K+ L
Sbjct:   178 SKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVKL 211

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0293922 DDB_G0293922 [Dictyostelium discoideum (taxid:44689)]

 Score = 132 (51.5 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 35/152 (23%), Positives = 75/152 (49%)

Query:    92 IWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRS---NM 148
             ++LIGT H+SQ S  D++ ++  ++PD + +EL   RA ++ ++      Q L+    N 
Sbjct:    54 VYLIGTIHVSQQSCEDIKTLLSIVEPDTIFIELSNERAPLLTSTEDQIISQLLKKPNINW 113

Query:   149 FSLSGTGFFGAVGRSIDL-GGQTXXXXXXXXXXFSSKISSDVNRPF--GDEFRAARKVAE 205
             F+   + F+ ++ ++      +             + ++++ N+P+  G+EFR   + ++
Sbjct:   114 FTTKLSDFYLSIHQNFYYYTTKISMNNKFLKNQIGNNVNNENNKPYIYGNEFRIGYQYSK 173

Query:   206 EVGAQIVLGDRPIEITLERAWNSLKWNEKLNL 237
                  ++LGDR  + +  R +N L     L L
Sbjct:   174 LNKCSVLLGDRNFKSSWNRIFNYLDLKTILEL 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      299       289   0.00088  115 3  11 22  0.48    33
                                                     33  0.43    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  216 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.12u 0.10s 24.22t   Elapsed:  00:00:01
  Total cpu time:  24.12u 0.10s 24.22t   Elapsed:  00:00:01
  Start:  Thu May  9 15:23:13 2013   End:  Thu May  9 15:23:14 2013

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007407001 SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (382 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
COG1916	388	COG1916, COG1916, Uncharacterized homolog of PrgY	1e-26
TIGR00261	380	TIGR00261, traB, pheromone shutdown-related protei	2e-18
pfam01963	261	pfam01963, TraB, TraB family	8e-13

>gnl|CDD|224828 COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]

 Score =  107 bits (269), Expect = 1e-26
 Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 24/182 (13%)

Query: 87  VEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGEND--QQL 144
            E + ++++GT H+S+DS  +V R++   KPD V VEL  +R   +   +  E D  Q L
Sbjct: 9   FEEKEVYILGTAHVSKDSVEEVRRIILEEKPDAVAVELDEARLLSLLGGSREELDLAQVL 68

Query: 145 RSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVA 204
           +       G  FF   G              LLLA F  K+  ++    G E +AA + A
Sbjct: 69  KE------GKAFFLLAG--------------LLLAYFQRKLGKELGVKPGSEMKAAIEAA 108

Query: 205 EEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKVFLLLKD 264
            E+GA + L DR I +TL RAW  + + EKL L+ ++I G+  P    ++     L  +D
Sbjct: 109 RELGAPVALIDRDIGVTLRRAWAKMPFWEKLKLISSLISGLLFPGQSEIE--IDELKQED 166

Query: 265 VL 266
           VL
Sbjct: 167 VL 168

Length = 388

>gnl|CDD|129363 TIGR00261, traB, pheromone shutdown-related protein TraB

 Score = 83.7 bits (207), Expect = 2e-18
 Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 22/183 (12%)

Query: 87  VEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRS 146
           +  + I+++GT H+S+ S+ +V  ++  +KPD + VEL   R   +  +     D     
Sbjct: 1   IHEKTIYILGTAHVSKKSSEEVANLIEILKPDYIAVELDERRYHSLLNTKWRNLD----- 55

Query: 147 NMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEE 206
                        + + +  G    L + L+LA F  K+  +     G E + A + A++
Sbjct: 56  -------------IDKVLKQGNAFFLIINLILANFQKKLGEEQGIKPGSEMKTAIEKAKK 102

Query: 207 VGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKVFLLLKDVL 266
            G  ++L DR IE TL+RAW S+ + EK  ++ ++    ++ + +  +  K  LL +D L
Sbjct: 103 HGIPLILIDRDIETTLKRAWISITFFEKAKIISSLFS--STDAKIEDEIEK--LLEQDAL 158

Query: 267 HFF 269
              
Sbjct: 159 SKI 161

traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family [Unknown function, General]. Length = 380

>gnl|CDD|216812 pfam01963, TraB, TraB family

 Score = 66.6 bits (163), Expect = 8e-13
 Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 31/180 (17%)

Query: 91  NIWLIGTTHLSQDSAADVERVVRAI--KPDNVVVELC--------RSRAGIMYTSNG--- 137
            I+L+GT H+S  S   +   +     + D VVVEL              +    +G   
Sbjct: 11  TIYLLGTAHVSDPSLYPLPPAIEKALEQADAVVVELDPAALPALLLLLPKLAMLPDGPTL 70

Query: 138 ----GENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALF-SSKISSDVNRP 192
                  +        +  G      + +++       LAL L LA F  + ++ ++   
Sbjct: 71  DDLLSPEEWARLDEALAARG------IPQALKKFKPWFLALLLALAAFQQAGLAPELGVD 124

Query: 193 FGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMS 252
            G E RAA +    +G    L DR I++TL RA       E+L LL + +  +    D+ 
Sbjct: 125 PGLEKRAAAEGKPVLG----LEDREIQLTLLRALP---LEEQLALLRSTLDELDKGDDLL 177

pAD1 is a hemolysin/bacteriocin plasmid originally identified in Enterococcus faecalis DS16. It encodes a mating response to a peptide sex pheromone, cAD1, secreted by recipient bacteria. Once the plasmid pAD1 is acquired, production of the pheromone ceases--a trait related in part to a determinant designated traB. However a related protein is found in C. elegans, suggesting that members of the TraB family have some more general function. This family also includes the bacterial GumN protein. The family has a conserved GXXH motif close to the N-terminus, a conserved glutamate and a conserved arginine that may be catalytic. The family also includes a second conserved GXXH motif near the C-terminus. Length = 261

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
TIGR00261	380	traB pheromone shutdown-related protein TraB. traB	100.0
COG1916	388	Uncharacterized homolog of PrgY (pheromone shutdow	100.0
KOG2860	359	consensus Uncharacterized conserved protein, conta	100.0
PF01963	259	TraB: TraB family; InterPro: IPR002816 In prokaryo	99.45
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	91.5
COG3735	299	Uncharacterized protein conserved in bacteria [Fun	85.01

>TIGR00261 traB pheromone shutdown-related protein TraB

Probab=100.00  E-value=5.8e-46  Score=361.17  Aligned_cols=177  Identities=25%  Similarity=0.389  Sum_probs=153.3

Q ss_pred             CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechhhhhhccCCCC--CCChHHhhhhhcccCCCccccccchhhc
Q 022310           88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNG--GENDQQLRSNMFSLSGTGFFGAVGRSID  165 (299)
Q Consensus        88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~R~~~L~~~~~--~~~~~~lk~~~~~l~~~~~~~av~~~i~  165 (299)
                      ++++||||||||||++|+++|+++|+++|||+||||||++|++.|..+.+  .++.+++|                    
T Consensus         2 ~~~~i~lvGTAHvS~~S~~eV~~~I~~~~PD~VaVELd~~R~~~l~~~~~~~~di~~vlk--------------------   61 (380)
T TIGR00261         2 HEKTIYILGTAHVSKKSSEEVANLIEILKPDYIAVELDERRYHSLLNTKWRNLDIDKVLK--------------------   61 (380)
T ss_pred             CCcEEEEEecccCCHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHhhhhhccCCHHHHhh--------------------
Confidence            68999999999999999999999999999999999999999998876632  23333333                    


Q ss_pred             ccchHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCeEEEccccHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 022310          166 LGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGI  245 (299)
Q Consensus       166 ~gg~~~ll~~llLa~fqkkl~~~lGv~PG~EfraAie~A~~~ga~VvLgDRdI~iTL~Raw~~Ls~~eKlkL~~~Ll~~~  245 (299)
                      .|+...++++++|++||+|+++++|++||+||++|+++|+++||+|+||||||++|++|+|++|+||+|+||+++|+++.
T Consensus        62 ~g~~~~~l~~~~La~~q~~l~~~~gi~PG~Em~~Ai~~A~e~g~~v~LiDRdI~iTl~R~w~~~~~~eK~kl~~~l~~~~  141 (380)
T TIGR00261        62 QGNAFFLIINLILANFQKKLGEEQGIKPGSEMKTAIEKAKKHGIPLILIDRDIETTLKRAWISITFFEKAKIISSLFSST  141 (380)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCcEEEeCCCHhHHHHHHHHhCCHHHHHHHHHHHHhcc
Confidence            44445588899999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCCCHHHHHhhhhHHHHHHHHHhhhccc---cccCCcch
Q 022310          246 TSPSDMSLDNLKVFLLLKDVLHFFSCQLTMC---LHNHNCSI  284 (299)
Q Consensus       246 ~~~~~is~eeie~~d~l~~~l~E~~~~~~~~---l~~en~~~  284 (299)
                      +..++.+.|++++.|.++.+|+||...+|.-   |-+|++.+
T Consensus       142 ~~~~e~~ie~l~~~d~L~~~~~e~~~~~P~l~~~LIdERD~y  183 (380)
T TIGR00261       142 DAKIEDEIEKLLEQDALSKIMKELSKISPKVKKVLIDERDEF  183 (380)
T ss_pred             ccCCHHHHHHhhhhhHHHHHHHHHhhhCCchhhHHHHHHHHH
Confidence            7544444455666888999999998776654   77788777

traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.

>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]

Probab=100.00  E-value=6.9e-45  Score=348.60  Aligned_cols=177  Identities=32%  Similarity=0.468  Sum_probs=158.3

Q ss_pred             CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechhhhhhccCCCC--CCChHHhhhhhcccCCCccccccchhhc
Q 022310           88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNG--GENDQQLRSNMFSLSGTGFFGAVGRSID  165 (299)
Q Consensus        88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~R~~~L~~~~~--~~~~~~lk~~~~~l~~~~~~~av~~~i~  165 (299)
                      +.++||||||||||++|+++|+++|++++||+|+||||+.|+..|.....  .++.+.+|                    
T Consensus        10 ~~~~v~iiGTAHVS~~SveeVrr~I~~~~PDaVAVELd~~R~~sLl~~~~~~ldl~~vlk--------------------   69 (388)
T COG1916          10 EEKEVYILGTAHVSKDSVEEVRRIILEEKPDAVAVELDEARLLSLLGGSREELDLAQVLK--------------------   69 (388)
T ss_pred             ccceEEEEeeeecCHhHHHHHHHHHHhcCCCeEEEEecHHHHHHHhcCCcccCCHHHHHH--------------------
Confidence            45699999999999999999999999999999999999999998877665  33344554                    


Q ss_pred             ccchHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCeEEEccccHHHHHHHHHhcCChHHHHHHHHHHHHh-
Q 022310          166 LGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRG-  244 (299)
Q Consensus       166 ~gg~~~ll~~llLa~fqkkl~~~lGv~PG~EfraAie~A~~~ga~VvLgDRdI~iTL~Raw~~Ls~~eKlkL~~~Ll~~-  244 (299)
                      .|+...++.+++|++||+|+|+++|++||+||++||+.|++.|+||+|+||||++||+|+|.+|++|||+|++++|+.+ 
T Consensus        70 ~Gk~~~~l~~~lLa~~Qrklg~~~Gv~PGsEmk~AIe~A~e~ga~V~lIDRdI~vTl~R~~~~~~~~EKlK~~~~L~~~~  149 (388)
T COG1916          70 EGKAFFLLAGLLLAYFQRKLGKELGVKPGSEMKAAIEAARELGAPVALIDRDIGVTLRRAWAKMPFWEKLKLISSLISGL  149 (388)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCEEEecccHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence            3444557889999999999999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             hcCC-CCCCHHHHHhhhhHHHHHHHHHhhhccc---cccCCcch
Q 022310          245 ITSP-SDMSLDNLKVFLLLKDVLHFFSCQLTMC---LHNHNCSI  284 (299)
Q Consensus       245 ~~~~-~~is~eeie~~d~l~~~l~E~~~~~~~~---l~~en~~~  284 (299)
                      .+.. ++.+.+++...|.++.+|+||++.+|..   |.+|++-|
T Consensus       150 ~~~g~~e~ei~~l~~~D~~~al~~efr~~~P~~~~vLIDERd~y  193 (388)
T COG1916         150 LFPGQSEIEIDELKQEDVLSALMQEFRRFSPTVYKVLIDERDRY  193 (388)
T ss_pred             ccCCCchHHHHHHhhhhHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence            4554 4677788888999999999999999987   88998877

>KOG2860 consensus Uncharacterized conserved protein, contains TraB domain [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-38  Score=298.70  Aligned_cols=255  Identities=27%  Similarity=0.328  Sum_probs=208.3

Q ss_pred             CCcccCCCCCCCCCCCCccccccCCCCCCccchHHhhHhhHHHHhhhccchhhhccCCchhhhhhccCCCCCCccccccC
Q 022310            9 FPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVE   88 (299)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   88 (299)
                      ||+|+++  .+++. .+ ++.++..+|+++++|..|..+++++++.++|+ .+++.+ +   .++..+++.|+|+- +..
T Consensus        11 ~~~~~~~--e~~~~-~~-~~~~~~g~~~~~~~r~di~~~~~~a~a~~~~e-~dla~~-~---~~~~~~~~d~~~~k-~l~   80 (359)
T KOG2860|consen   11 YELEQAP--EATED-AV-VNNPVCGGYHFGRKRADIFVPNANAVAVLKWE-TDLAIP-P---RNPVLSDSDEEWKK-AIL   80 (359)
T ss_pred             ccccCCh--Hhhhh-hh-ccCcccCCcccchhhhhccchhhhhhhccCCc-hhcccC-C---CCCcccCCcHHHHH-hhc
Confidence            7777776  44444 33 67889999999999999999999999999999 999977 4   67778899999998 888


Q ss_pred             CcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechhhhhhccCCCCCCChHHhhhhhcccCCCccccccchhhcccc
Q 022310           89 PENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGG  168 (299)
Q Consensus        89 ~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~R~~~L~~~~~~~~~~~lk~~~~~l~~~~~~~av~~~i~~gg  168 (299)
                      +++||||||+|+|++|.++|..+|+.+|||.|+||||++|..++...+.     .+.+..-.+.|.+|.+.++++.+.+|
T Consensus        81 ~s~i~lVgTah~S~Es~~~v~~virtv~pd~V~vElCrsr~sIis~~ep-----~l~se~evl~g~~f~~~~~~~~~~gG  155 (359)
T KOG2860|consen   81 DSTIYLVGTAHFSKESQEDVSNVIRAVQPDFVMVELCRSRISIISADEP-----QLLSEAEVLNGAKFRGIFEEAGKIGG  155 (359)
T ss_pred             cceeEEEEeeecCccccccHHHHhhccCcceeehhhccchhhcccccCh-----hhhccCcccCCcceeeeeccccccCc
Confidence            8999999999999999999999999999999999999999887665543     34444556678899999999888888


Q ss_pred             hHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHh-CCeEEEccccHHHHHHHHHhcCChHHHHHHHHHHHHhhcC
Q 022310          169 QTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEV-GAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITS  247 (299)
Q Consensus       169 ~~~ll~~llLa~fqkkl~~~lGv~PG~EfraAie~A~~~-ga~VvLgDRdI~iTL~Raw~~Ls~~eKlkL~~~Ll~~~~~  247 (299)
                      .+.++    +..++.+..+++++.||+||++|-+++-+. ||.++||||+|++||.|+|+.||+|+|+++++.+-++.. 
T Consensus       156 ~~~L~----lrsv~a~~~~dLdmaa~gefr~a~~efs~~~g~~v~lgDrpieitLqRa~~eLs~~~a~~lv~~vt~s~~-  230 (359)
T KOG2860|consen  156 IVFLL----LRSVSAKDLGDLDMAAGGEFRRASREFSTLMGCLVVLGDRPIEITLQRALSELSSWQAVVLVGHVTFSKK-  230 (359)
T ss_pred             eEehh----hhhhhhhhccccccccchhHHHHhhhhccCCCceEEecCCcceeeHHHHHHhcchhheeeEEEEEEEeec-
Confidence            87644    444566677889999999999999999665 999999999999999999999999999999998654432 


Q ss_pred             CCCCCHHHHHh---hhhHHHHHHHHHhhhccc---cccCCcch
Q 022310          248 PSDMSLDNLKV---FLLLKDVLHFFSCQLTMC---LHNHNCSI  284 (299)
Q Consensus       248 ~~~is~eeie~---~d~l~~~l~E~~~~~~~~---l~~en~~~  284 (299)
                       +.++.+++++   -|.++..+.|+.-.+|.-   |..|++-+
T Consensus       231 -~s~~t~eve~c~q~~Lveql~~~~a~~vp~~~lvlv~eRd~y  272 (359)
T KOG2860|consen  231 -NSIQTEEVENCKQTDLVEQLTIEMANFVPALSLVLVQERDLY  272 (359)
T ss_pred             -cccchhhhhhhhHHhHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence             3444555554   567788888888666643   55555443

>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []

Probab=99.45  E-value=2.6e-13  Score=122.72  Aligned_cols=146  Identities=25%  Similarity=0.254  Sum_probs=102.3

Q ss_pred             CCcEEEEEeccccChhHHHHHHHHHHh--cCCCeEEEee------------------chhhhhhccCCCC-CCChHHhhh
Q 022310           88 EPENIWLIGTTHLSQDSAADVERVVRA--IKPDNVVVEL------------------CRSRAGIMYTSNG-GENDQQLRS  146 (299)
Q Consensus        88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~--vkPD~V~VEL------------------c~~R~~~L~~~~~-~~~~~~lk~  146 (299)
                      +|.++||+||+|+++.|...+.+.|++  .+||+|+||+                  |..++..+..++. ..+...++.
T Consensus         8 ~g~~~yL~GT~H~~~~~~~~~~~~i~~a~~~sd~v~~E~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~l~~~~~~   87 (259)
T PF01963_consen    8 NGKTVYLLGTIHVSPKSFYPLPDAIEEALKKSDVVVVELDMSDPEAQAQMQQAMMLPDGKTLKDLLSPEEYARLEELLAE   87 (259)
T ss_pred             CCeEEEEEeccCCCchhhhhhHHHHHHHHhcCCEEEEecccccHHHHHHHHhhccCCCcccHHHhcCHHHHHHHHHHHHh
Confidence            479999999999999999999999999  9999999999                  3333322222211 111111111


Q ss_pred             hhcccCCCccccccchhhcccchHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCeEEEccccHHHHHHHHH
Q 022310          147 NMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAW  226 (299)
Q Consensus       147 ~~~~l~~~~~~~av~~~i~~gg~~~ll~~llLa~fqkkl~~~lGv~PG~EfraAie~A~~~ga~VvLgDRdI~iTL~Raw  226 (299)
                      .     +.+.     ..+...+...+.+.+.+..+++.+..+.|+.++.+++++.+.++..|    |.|++.++|+.|.+
T Consensus        88 ~-----~~~~-----~~~~~~~p~~~~~~l~~~~~~~~~~~~~gvd~~l~~~A~~~~~~v~~----Le~~~~q~~~~~~~  153 (259)
T PF01963_consen   88 Y-----GLPL-----EMLRKLKPWAAAFLLSLSAFQKGYSPEYGVDPYLEQRAAEEGKPVVG----LETREEQITLLRSL  153 (259)
T ss_pred             c-----CCCH-----HHHHcCCHHHHHHHHHHHHHhccccccccccHHHHHHHHHhCCCccc----ccCHHHHHHHHhcC
Confidence            0     1000     22333444445556666778888888899999999988877766666    99999999998655


Q ss_pred             hcCChHHHHHHHHHHHHhhcCCCC
Q 022310          227 NSLKWNEKLNLLINVIRGITSPSD  250 (299)
Q Consensus       227 ~~Ls~~eKlkL~~~Ll~~~~~~~~  250 (299)
                         +.+++++++...+..+....+
T Consensus       154 ---~~~~q~~~L~~~l~~~~~~~~  174 (259)
T PF01963_consen  154 ---PLDEQVKMLRETLDDIEDGEK  174 (259)
T ss_pred             ---CHHHHHHHHHHHHhccccchH
Confidence               999999999988766443333

Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.50  E-value=0.2  Score=49.36  Aligned_cols=51  Identities=14%  Similarity=0.159  Sum_probs=34.8

Q ss_pred             CCCCCHHHHHh-hhhHHHHHHHHH---hhhcc--------ccccCCcch--------hhhhccchhhhccc
Q 022310          248 PSDMSLDNLKV-FLLLKDVLHFFS---CQLTM--------CLHNHNCSI--------FDMCQNYFFCLGRI  298 (299)
Q Consensus       248 ~~~is~eeie~-~d~l~~~l~E~~---~~~~~--------~l~~en~~~--------~~~~qn~~~~~~~~  298 (299)
                      ..+.|.|+.+. +|.+...+|-+-   -++++        .|+|.+..+        |+|.||||+||+.+
T Consensus        92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v  162 (342)
T KOG2160|consen   92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQV  162 (342)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34667777665 777777776665   12222        466666666        99999999999864

>COG3735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.01  E-value=0.48  Score=45.93  Aligned_cols=47  Identities=21%  Similarity=0.379  Sum_probs=32.4

Q ss_pred             CCccccccCCcEEEEEeccccChhHHHHHHHHHHh--cCCCeEEEeech
Q 022310           80 PAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRA--IKPDNVVVELCR  126 (299)
Q Consensus        80 p~~~~~~~~~~eIyLVGTAHVS~~Sa~eV~~vI~~--vkPD~V~VELc~  126 (299)
                      |.|..+.-.++.+||+||.||.+.=..---..|..  .+-|.++||+|.
T Consensus        32 ~~~~i~~~G~s~~yL~GTiHvg~~~~~~lp~~~~~a~~~A~tLivE~d~   80 (299)
T COG3735          32 PFWKIEKPGNSPLYLLGTIHVGSPRVLPLPDKLLKALDQADTLIVEADD   80 (299)
T ss_pred             cceeeecCCCCceEEeeeeecCCCccccCCHHHHHHHhhcCceEEEecc
Confidence            36777777888899999999986533222222211  367999999995

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00